Citrus Sinensis ID: 045076

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
Protein Sequence
KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL
Secondary Structure (PSIPRED)
cccEEEEccccEEEccccccccccccccEEEEccccccHHHHHccHHHHHHHHHHHHccccEEEEcccHHHHHHHccccccccEEEcccHHccccccccEEccccEEEccccccccccccHHHHHHHHHHHHccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccEEEEcccEEEEEcccHHHHccccccEEEEccccccHHHHcccHHHHHHHHHHHHcccEEEEEEccHHHHHHHcccccccEEcccccHHHHHHHcccEEEcccEEEEccEEEEccHHHHHHHHHHHHHHHHcHHHHHHHHHHH
Coil and Loop (DISEMBL)
kqlrvdachGVKIVADALVSDCRDAVFDLialpvcmpdatnlkeSKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRvqqdgkvvttrgpgtTMEFAVALVEQLYRKgkadevsgpl
Flexible Loop (DISEMBL)
kqlrvdachgVKIVADALVSDCRDAVFDLIALPvcmpdatnlkeskVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKvvttrgpgttMEFAVALVEQLYrkgkadevsgpl
Low Complexity Region (SEG)
KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL
Disordered region (IsUnstruct)
****VDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLY************
Disordered Region (DISOPRED)
*QLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL
Disordered Region (DISEMBL)
KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRK**********
Disordered Region (DISPRO)
*QLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSG**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	145	2.2.26 [Sep-21-2011]
Q9MAH3	438	Protein DJ-1 homolog B OS	yes	no	0.993	0.328	0.655	4e-49
Q9FPF0	392	Protein DJ-1 homolog A OS	no	no	0.979	0.362	0.631	9e-49
Q8VY09	472	Protein DJ-1 homolog C OS	no	no	0.958	0.294	0.404	2e-28
Q7TQ35	189	Protein DJ-1 OS=Mesocrice	N/A	no	0.924	0.708	0.394	6e-17
Q8UW59	189	Protein DJ-1 OS=Gallus ga	yes	no	0.910	0.698	0.402	1e-16
Q99LX0	189	Protein DJ-1 OS=Mus muscu	yes	no	0.924	0.708	0.379	1e-15
O88767	189	Protein DJ-1 OS=Rattus no	yes	no	0.813	0.624	0.391	2e-15
Q5XJ36	189	Protein DJ-1 OS=Danio rer	yes	no	0.924	0.708	0.364	3e-15
Q95LI9	189	Protein DJ-1 OS=Chloroceb	N/A	no	0.924	0.708	0.379	4e-15
Q99497	189	Protein DJ-1 OS=Homo sapi	yes	no	0.924	0.708	0.379	4e-15

>sp|Q9MAH3|DJ1B_ARATH Protein DJ-1 homolog B OS=Arabidopsis thaliana GN=DJ1B PE=2 SV=1

 Score =  192 bits (489), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 95/145 (65%), Positives = 114/145 (78%), Gaps = 1/145 (0%)

Query: 1   KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGR 60
            Q+ VDACHG+K+VAD L+SD  D+VFDLI LP  +P    LK  K LE +VKKQ ++GR
Sbjct: 89  NQVGVDACHGIKMVADTLLSDITDSVFDLIMLPGGLPGGETLKNCKPLEKMVKKQDTDGR 148

Query: 61  LYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGT 120
           L AA+C +PA+A G+WGLL+G KATCYP FME+LA ACA  VESRV+ DGK+VT+RGPGT
Sbjct: 149 LNAAICCAPALAFGTWGLLEGKKATCYPVFMEKLA-ACATAVESRVEIDGKIVTSRGPGT 207

Query: 121 TMEFAVALVEQLYRKGKADEVSGPL 145
           TMEF+V LVEQL  K KA EVSGPL
Sbjct: 208 TMEFSVTLVEQLLGKEKAVEVSGPL 232

May be involved in oxidative stress response.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FPF0|DJ1A_ARATH Protein DJ-1 homolog A OS=Arabidopsis thaliana GN=DJ1A PE=1 SV=1

 Score =  191 bits (486), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 91/144 (63%), Positives = 113/144 (78%)

Query: 2   QLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRL 61
           Q+ VDACHG+K+VAD L+SD  D+VFDLI LP  +P    LK  K LE +VKKQ S+GRL
Sbjct: 43  QVGVDACHGIKMVADTLLSDITDSVFDLIVLPGGLPGGETLKNCKSLENMVKKQDSDGRL 102

Query: 62  YAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTT 121
            AA+C +PA+ALG+WGLL+G KAT YP FME+LA  CA  VESRVQ DG++VT+RGPGTT
Sbjct: 103 NAAICCAPALALGTWGLLEGKKATGYPVFMEKLAATCATAVESRVQIDGRIVTSRGPGTT 162

Query: 122 MEFAVALVEQLYRKGKADEVSGPL 145
           +EF++ L+EQL+ K KADEVS  L
Sbjct: 163 IEFSITLIEQLFGKEKADEVSSIL 186

Involved in oxidative stress response. Confers protection against diverse stresses by binding both CSD1 and GPX2 and mediating the cytosolic activation of the Cu-Zn-dependent superoxide dismutase activity of CSD1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY09|DJ1C_ARATH Protein DJ-1 homolog C OS=Arabidopsis thaliana GN=DJ1C PE=2 SV=1

 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 93/141 (65%), Gaps = 2/141 (1%)

Query: 1   KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGR 60
           ++L V+   G +++AD L+S C D V+DL+ALP  MP A  L++ ++LE I+K+QA + R
Sbjct: 120 QKLEVEGSSGTRLLADVLISKCADQVYDLVALPGGMPGAVRLRDCEILEKIMKRQAEDKR 179

Query: 61  LYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGT 120
           LY A+  +PA+ L  WGLL   + T +P+F  +L    A  V++ +Q  G++ T+RGPGT
Sbjct: 180 LYGAISMAPAITLLPWGLLTRKRTTGHPAFFGKLPTFWA--VKTNIQISGELTTSRGPGT 237

Query: 121 TMEFAVALVEQLYRKGKADEV 141
           + +FA++L EQL+ +  A  +
Sbjct: 238 SFQFALSLAEQLFGETTAKSI 258

Plays an essential role in chloroplast development and is required for chloroplast integrity and viability.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7TQ35|PARK7_MESAU Protein DJ-1 OS=Mesocricetus auratus GN=PARK7 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/137 (39%), Positives = 80/137 (58%), Gaps = 3/137 (2%)

Query: 11  VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           V I  D  + D +    +D++ LP     A NL ES V++ I+K+Q S   L AA+CA P
Sbjct: 50  VMICPDTSLEDAKKQGPYDVVVLPGGNLGAQNLSESPVVKEILKEQESRKGLIAAICAGP 109

Query: 70  AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
             AL +  +  G K T +P   +++      +  ESRV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPGAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAI 168

Query: 129 VEQLYRKGKADEVSGPL 145
           VE L  K  AD+V  PL
Sbjct: 169 VEALSGKEAADQVKAPL 185

Protects cells against oxidative stress and cell death. Plays a role in regulating expression or stability of the mitochondrial uncoupling proteins SLC25A14 and SLC25A27 in dopaminergic neurons of the substantia nigra pars compacta and attenuates the oxidative stress induced by calcium entry into the neurons via L-type channels during pacemaking. Eliminates hydrogen peroxide and protects cells against hydrogen peroxide-induced cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Stabilizes NFE2L2 by preventing its association with KEAP1 and its subsequent ubiquitination. Binds to OTUD7B and inhibits its deubiquitinating activity. Enhances RELA nuclear translocation. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Mesocricetus auratus (taxid: 10036)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q8UW59|PARK7_CHICK Protein DJ-1 OS=Gallus gallus GN=PARK7 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/139 (40%), Positives = 81/139 (58%), Gaps = 7/139 (5%)

Query: 11  VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           V I  DA + D R +  +D+I LP     A NL ES  ++ I+K Q S   L AA+CA P
Sbjct: 50  VLICPDASLEDARKEGPYDVIVLPGGNLGAQNLSESAAVKDILKDQESRKGLIAAICAGP 109

Query: 70  AVALGSWGLLKGLKATCYPSFMEQL---APACAATVESRVQQDGKVVTTRGPGTTMEFAV 126
             AL + G+  G K   +P   +++   A  C +  ESRV++DG ++T+RGPGT+ EF +
Sbjct: 110 -TALLAHGIGFGSKVITHPLAKDKMMNGAHYCYS--ESRVEKDGNILTSRGPGTSFEFGL 166

Query: 127 ALVEQLYRKGKADEVSGPL 145
           A+VE L  K  A++V  PL
Sbjct: 167 AIVEALMGKEVAEQVKAPL 185

Protects cells against oxidative stress and cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q99LX0|PARK7_MOUSE Protein DJ-1 OS=Mus musculus GN=Park7 PE=1 SV=1

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 3/137 (2%)

Query: 11  VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           V I  D  + D +    +D++ LP     A NL ES +++ I+K+Q S   L AA+CA P
Sbjct: 50  VMICPDTSLEDAKTQGPYDVVVLPGGNLGAQNLSESPMVKEILKEQESRKGLIAAICAGP 109

Query: 70  AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
             AL +  +  G K T +P   +++      +  ESRV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEVGFGCKVTTHPLAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAI 168

Query: 129 VEQLYRKGKADEVSGPL 145
           VE L  K  A++V  PL
Sbjct: 169 VEALVGKDMANQVKAPL 185

Protects cells against oxidative stress and cell death. Plays a role in regulating expression or stability of the mitochondrial uncoupling proteins SLC25A14 and SLC25A27 in dopaminergic neurons of the substantia nigra pars compacta and attenuates the oxidative stress induced by calcium entry into the neurons via L-type channels during pacemaking. Eliminates hydrogen peroxide and protects cells against hydrogen peroxide-induced cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Stabilizes NFE2L2 by preventing its association with KEAP1 and its subsequent ubiquitination. Binds to OTUD7B and inhibits its deubiquitinating activity. Enhances RELA nuclear translocation. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|O88767|PARK7_RAT Protein DJ-1 OS=Rattus norvegicus GN=Park7 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 74/120 (61%), Gaps = 2/120 (1%)

Query: 27  FDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATC 86
           +D++ LP     A NL ES +++ I+K+Q +   L AA+CA P  AL +  +  G K T 
Sbjct: 67  YDVVVLPGGNLGAQNLSESALVKEILKEQENRKGLIAAICAGP-TALLAHEVGFGCKVTS 125

Query: 87  YPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL 145
           +P   +++      +  ESRV++DG ++T+RGPGT+ EFA+A+VE L  K  A++V  PL
Sbjct: 126 HPLAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALSGKDMANQVKAPL 185

Protects cells against oxidative stress and cell death. Plays a role in regulating expression or stability of the mitochondrial uncoupling proteins SLC25A14 and SLC25A27 in dopaminergic neurons of the substantia nigra pars compacta and attenuates the oxidative stress induced by calcium entry into the neurons via L-type channels during pacemaking. Eliminates hydrogen peroxide and protects cells against hydrogen peroxide-induced cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Stabilizes NFE2L2 by preventing its association with KEAP1 and its subsequent ubiquitination. Binds to OTUD7B and inhibits its deubiquitinating activity. Enhances RELA nuclear translocation. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q5XJ36|PARK7_DANRE Protein DJ-1 OS=Danio rerio GN=park7 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 77/137 (56%), Gaps = 3/137 (2%)

Query: 11  VKIVADALVSDC-RDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           V I  D+ + D  +   +D++ LP  +  A NL ES  ++ ++K Q     L AA+CA P
Sbjct: 50  VMICPDSSLEDAHKQGPYDVVLLPGGLLGAQNLSESPAVKEVLKDQEGRKGLIAAICAGP 109

Query: 70  AVALGSWGLLKGLKATCYPSFMEQL-APACAATVESRVQQDGKVVTTRGPGTTMEFAVAL 128
             AL + G+  G   T +P   +++ A       E+RVQ+DG V+T+RGPGT+ EFA+ +
Sbjct: 110 -TALLAHGIAYGSTVTTHPGAKDKMMAGDHYKYSEARVQKDGNVITSRGPGTSFEFALTI 168

Query: 129 VEQLYRKGKADEVSGPL 145
           VE+L     A +V  PL
Sbjct: 169 VEELMGAEVAAQVKAPL 185

Protects cells against oxidative stress and cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone (By similarity). Protects dopaminergic neurons against cell death arising from oxidative stress and proteasome inhibition, probably by a TP53/p53-dependent mechanism.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q95LI9|PARK7_CHLAE Protein DJ-1 OS=Chlorocebus aethiops GN=PARK7 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 3/137 (2%)

Query: 11  VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           V I  DA + D + +  +D++ LP     A NL ES  ++ I+K+Q +   L AA+CA P
Sbjct: 50  VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP 109

Query: 70  AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
             AL +  +  G K T +P   +++      T  E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168

Query: 129 VEQLYRKGKADEVSGPL 145
           VE L  K  A +V  PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185

Protects cells against oxidative stress and cell death. Plays a role in regulating expression or stability of the mitochondrial uncoupling proteins SLC25A14 and SLC25A27 in dopaminergic neurons of the substantia nigra pars compacta and attenuates the oxidative stress induced by calcium entry into the neurons via L-type channels during pacemaking. Eliminates hydrogen peroxide and protects cells against hydrogen peroxide-induced cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Stabilizes NFE2L2 by preventing its association with KEAP1 and its subsequent ubiquitination. Binds to OTUD7B and inhibits its deubiquitinating activity. Enhances RELA nuclear translocation. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Chlorocebus aethiops (taxid: 9534)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

>sp|Q99497|PARK7_HUMAN Protein DJ-1 OS=Homo sapiens GN=PARK7 PE=1 SV=2

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 3/137 (2%)

Query: 11  VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           V I  DA + D + +  +D++ LP     A NL ES  ++ I+K+Q +   L AA+CA P
Sbjct: 50  VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP 109

Query: 70  AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
             AL +  +  G K T +P   +++      T  E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168

Query: 129 VEQLYRKGKADEVSGPL 145
           VE L  K  A +V  PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185

Protects cells against oxidative stress and cell death. Plays a role in regulating expression or stability of the mitochondrial uncoupling proteins SLC25A14 and SLC25A27 in dopaminergic neurons of the substantia nigra pars compacta and attenuates the oxidative stress induced by calcium entry into the neurons via L-type channels during pacemaking. Eliminates hydrogen peroxide and protects cells against hydrogen peroxide-induced cell death. May act as an atypical peroxiredoxin-like peroxidase that scavenges hydrogen peroxide. Following removal of a C-terminal peptide, displays protease activity and enhanced cytoprotective action against oxidative stress-induced apoptosis. Stabilizes NFE2L2 by preventing its association with KEAP1 and its subsequent ubiquitination. Binds to OTUD7B and inhibits its deubiquitinating activity. Enhances RELA nuclear translocation. Binds to a number of mRNAs containing multiple copies of GG or CC motifs and partially inhibits their translation but dissociates following oxidative stress. Required for correct mitochondrial morphology and function and for autophagy of dysfunctional mitochondria. Regulates astrocyte inflammatory responses. Acts as a positive regulator of androgen receptor-dependent transcription. Prevents aggregation of SNCA. Plays a role in fertilization. Has no proteolytic activity. Has cell-growth promoting activity and transforming activity. May function as a redox-sensitive chaperone.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
255566579	364	conserved hypothetical protein [Ricinus	1.0	0.398	0.787	7e-58
147775474	427	hypothetical protein VITISV_008479 [Viti	0.993	0.337	0.744	1e-56
302142910	393	unnamed protein product [Vitis vinifera]	0.993	0.366	0.737	2e-56
225461638	478	PREDICTED: uncharacterized protein LOC10	0.993	0.301	0.737	2e-56
449438931	434	PREDICTED: uncharacterized protein LOC10	0.993	0.331	0.751	3e-56
224114830	442	predicted protein [Populus trichocarpa]	0.986	0.323	0.689	1e-52
312282985	391	unnamed protein product [Thellungiella h	0.993	0.368	0.641	1e-47
21536528	438	4-methyl-5(b-hydroxyethyl)-thiazole mono	0.993	0.328	0.655	3e-47
18404397	438	4-methyl-5(b-hydroxyethyl)-thiazole mono	0.993	0.328	0.655	3e-47
297853104	437	DJ-1 family protein [Arabidopsis lyrata	0.993	0.329	0.655	3e-47

>gi|255566579|ref|XP_002524274.1| conserved hypothetical protein [Ricinus communis] gi|223536465|gb|EEF38113.1| conserved hypothetical protein [Ricinus communis]

 Score =  228 bits (580), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 115/146 (78%), Positives = 125/146 (85%), Gaps = 1/146 (0%)

Query: 1   KQLRVDACHGVKIVADALVSD-CRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNG 59
           KQL VDACHGVKI+ADALVSD   DA FDLIALP  MP ATNLK    LE++VKKQA++G
Sbjct: 77  KQLLVDACHGVKIIADALVSDFSNDAAFDLIALPGGMPGATNLKTCGTLESMVKKQAADG 136

Query: 60  RLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPG 119
           RLYAAVCASPAVA GSWG+LKGLKATCYPSFMEQL  + A  V+SRVQQDG VVT+RGPG
Sbjct: 137 RLYAAVCASPAVAFGSWGVLKGLKATCYPSFMEQLQSSDATAVDSRVQQDGIVVTSRGPG 196

Query: 120 TTMEFAVALVEQLYRKGKADEVSGPL 145
           TTMEFAVALVEQLY K KA+EVSGPL
Sbjct: 197 TTMEFAVALVEQLYGKDKANEVSGPL 222

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147775474|emb|CAN62882.1| hypothetical protein VITISV_008479 [Vitis vinifera]

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 108/145 (74%), Positives = 127/145 (87%), Gaps = 1/145 (0%)

Query: 1   KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGR 60
           KQL+VDACHGVKIVADAL+SDC D  FDLI+LP  MP A  L++   LE++VKK A++G+
Sbjct: 78  KQLQVDACHGVKIVADALISDCADTGFDLISLPGGMPGAATLRDCGXLESMVKKHAADGQ 137

Query: 61  LYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGT 120
           LYA +CA+PAVALGSWGL+KGLKATCYPSFMEQL+ + A TVESRVQQDGKVVT+RGPGT
Sbjct: 138 LYAGICAAPAVALGSWGLMKGLKATCYPSFMEQLS-STATTVESRVQQDGKVVTSRGPGT 196

Query: 121 TMEFAVALVEQLYRKGKADEVSGPL 145
           TMEF+V+LVEQLY K KA+EVSGPL
Sbjct: 197 TMEFSVSLVEQLYAKEKANEVSGPL 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142910|emb|CBI20205.3| unnamed protein product [Vitis vinifera]

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 107/145 (73%), Positives = 128/145 (88%), Gaps = 1/145 (0%)

Query: 1   KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGR 60
           K+L+VDACHGVKIVADAL+SDC D  FDLI+LP  MP A  L++  +LE++VKK A++G+
Sbjct: 42  KRLQVDACHGVKIVADALISDCADTGFDLISLPGGMPGAATLRDCGMLESMVKKHAADGQ 101

Query: 61  LYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGT 120
           LYA +CA+PAVALGSWGL+KGLKATCYPSFMEQL+ + A TVESRVQQDGKVVT+RGPGT
Sbjct: 102 LYAGICAAPAVALGSWGLMKGLKATCYPSFMEQLS-STATTVESRVQQDGKVVTSRGPGT 160

Query: 121 TMEFAVALVEQLYRKGKADEVSGPL 145
           TMEF+V+LVEQLY K KA+EVSGPL
Sbjct: 161 TMEFSVSLVEQLYGKEKANEVSGPL 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461638|ref|XP_002283063.1| PREDICTED: uncharacterized protein LOC100253735 [Vitis vinifera]

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 107/145 (73%), Positives = 128/145 (88%), Gaps = 1/145 (0%)

Query: 1   KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGR 60
           K+L+VDACHGVKIVADAL+SDC D  FDLI+LP  MP A  L++  +LE++VKK A++G+
Sbjct: 127 KRLQVDACHGVKIVADALISDCADTGFDLISLPGGMPGAATLRDCGMLESMVKKHAADGQ 186

Query: 61  LYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGT 120
           LYA +CA+PAVALGSWGL+KGLKATCYPSFMEQL+ + A TVESRVQQDGKVVT+RGPGT
Sbjct: 187 LYAGICAAPAVALGSWGLMKGLKATCYPSFMEQLS-STATTVESRVQQDGKVVTSRGPGT 245

Query: 121 TMEFAVALVEQLYRKGKADEVSGPL 145
           TMEF+V+LVEQLY K KA+EVSGPL
Sbjct: 246 TMEFSVSLVEQLYGKEKANEVSGPL 270

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438931|ref|XP_004137241.1| PREDICTED: uncharacterized protein LOC101212934 [Cucumis sativus] gi|449483151|ref|XP_004156507.1| PREDICTED: uncharacterized protein LOC101228984 [Cucumis sativus]

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 109/145 (75%), Positives = 124/145 (85%), Gaps = 1/145 (0%)

Query: 1   KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGR 60
             +RVDA H +KIVAD+L+SDC D VFDLIALP  MP AT+L++  VLE IVKKQA++GR
Sbjct: 82  NHIRVDAAHQIKIVADSLISDCADTVFDLIALPGGMPGATSLRDCAVLENIVKKQAADGR 141

Query: 61  LYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGT 120
           LYAA+CASPAV LGSWGLLKGLKATCYPSFMEQL  + A  VESRVQ DG+VVT+RGPGT
Sbjct: 142 LYAAICASPAVVLGSWGLLKGLKATCYPSFMEQLE-STATAVESRVQIDGQVVTSRGPGT 200

Query: 121 TMEFAVALVEQLYRKGKADEVSGPL 145
           T+EFAVALV+QLY K KADEVSGPL
Sbjct: 201 TLEFAVALVDQLYGKEKADEVSGPL 225

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114830|ref|XP_002316868.1| predicted protein [Populus trichocarpa] gi|222859933|gb|EEE97480.1| predicted protein [Populus trichocarpa]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 100/145 (68%), Positives = 121/145 (83%)

Query: 1   KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGR 60
           KQ+RVDA + VK+VAD+L+S+C DAVFDLI LP  +P ATN K  ++LE +VKKQ  +G+
Sbjct: 89  KQIRVDATYDVKLVADSLLSECSDAVFDLITLPGGIPGATNFKNCQLLEKLVKKQVEDGK 148

Query: 61  LYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGT 120
           LYAAVCASPAVA GSWGLL GLKATC+P FM++L  + A TVESRV ++G VVT+RGPGT
Sbjct: 149 LYAAVCASPAVAFGSWGLLNGLKATCHPFFMDELKSSGAITVESRVHEEGNVVTSRGPGT 208

Query: 121 TMEFAVALVEQLYRKGKADEVSGPL 145
           TMEFAVALVE+L+ K KADEVSGPL
Sbjct: 209 TMEFAVALVEKLFGKEKADEVSGPL 233

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282985|dbj|BAJ34358.1| unnamed protein product [Thellungiella halophila]

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 93/145 (64%), Positives = 114/145 (78%), Gaps = 1/145 (0%)

Query: 1   KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGR 60
            Q+ VD CHG+K+VAD L+SD  D+VFDLI LP  +P    LK  K LE +VKKQ ++GR
Sbjct: 42  NQVGVDVCHGIKMVADTLLSDVTDSVFDLIMLPGGLPGGETLKNCKALENMVKKQETDGR 101

Query: 61  LYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGT 120
           L AA+C +PA+ALG+WGLL+G KATCYP FME+LA  CA  VESRV+ DG++VT+RGPGT
Sbjct: 102 LNAAICCAPALALGTWGLLEGKKATCYPVFMEKLA-TCATAVESRVEIDGRIVTSRGPGT 160

Query: 121 TMEFAVALVEQLYRKGKADEVSGPL 145
           TMEF+V LVEQL+ K KA EVSGPL
Sbjct: 161 TMEFSVTLVEQLFGKEKAAEVSGPL 185

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536528|gb|AAM60860.1| 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative [Arabidopsis thaliana]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 95/145 (65%), Positives = 114/145 (78%), Gaps = 1/145 (0%)

Query: 1   KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGR 60
            Q+ VDACHG+K+VAD L+SD  D+VFDLI LP  +P    LK  K LE +VKKQ ++GR
Sbjct: 89  NQVGVDACHGIKMVADTLLSDITDSVFDLIMLPGGLPGGETLKNCKPLERMVKKQDTDGR 148

Query: 61  LYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGT 120
           L AA+C +PA+A G+WGLL+G KATCYP FME+LA ACA  VESRV+ DGK+VT+RGPGT
Sbjct: 149 LNAAICCAPALAFGTWGLLEGKKATCYPVFMEKLA-ACATAVESRVEIDGKIVTSRGPGT 207

Query: 121 TMEFAVALVEQLYRKGKADEVSGPL 145
           TMEF+V LVEQL  K KA EVSGPL
Sbjct: 208 TMEFSVTLVEQLLGKEKAVEVSGPL 232

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404397|ref|NP_564626.1| 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis [Arabidopsis thaliana] gi|7769869|gb|AAF69547.1|AC008007_22 F12M16.18 [Arabidopsis thaliana] gi|15810459|gb|AAL07117.1| unknown protein [Arabidopsis thaliana] gi|20259561|gb|AAM14123.1| unknown protein [Arabidopsis thaliana] gi|332194795|gb|AEE32916.1| 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis [Arabidopsis thaliana]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 95/145 (65%), Positives = 114/145 (78%), Gaps = 1/145 (0%)

Query: 1   KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGR 60
            Q+ VDACHG+K+VAD L+SD  D+VFDLI LP  +P    LK  K LE +VKKQ ++GR
Sbjct: 89  NQVGVDACHGIKMVADTLLSDITDSVFDLIMLPGGLPGGETLKNCKPLEKMVKKQDTDGR 148

Query: 61  LYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGT 120
           L AA+C +PA+A G+WGLL+G KATCYP FME+LA ACA  VESRV+ DGK+VT+RGPGT
Sbjct: 149 LNAAICCAPALAFGTWGLLEGKKATCYPVFMEKLA-ACATAVESRVEIDGKIVTSRGPGT 207

Query: 121 TMEFAVALVEQLYRKGKADEVSGPL 145
           TMEF+V LVEQL  K KA EVSGPL
Sbjct: 208 TMEFSVTLVEQLLGKEKAVEVSGPL 232

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853104|ref|XP_002894433.1| DJ-1 family protein [Arabidopsis lyrata subsp. lyrata] gi|297340275|gb|EFH70692.1| DJ-1 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  192 bits (488), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 95/145 (65%), Positives = 115/145 (79%), Gaps = 1/145 (0%)

Query: 1   KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGR 60
            Q+ VDACHG+K+VAD L+S+  D+VFDLI LP  +P    LK  K LE +VKKQ ++GR
Sbjct: 88  NQVGVDACHGIKMVADTLLSEITDSVFDLIMLPGGLPGGETLKNCKPLEKMVKKQDTDGR 147

Query: 61  LYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGT 120
           L AA+C +PA+ALG+WGLL+G KATCYP FME+LA ACA  VESRV+ DGK+VT+RGPGT
Sbjct: 148 LNAAICCAPALALGTWGLLEGKKATCYPVFMEKLA-ACATAVESRVEIDGKIVTSRGPGT 206

Query: 121 TMEFAVALVEQLYRKGKADEVSGPL 145
           TMEF+V LVEQL  K KA EVSGPL
Sbjct: 207 TMEFSVTLVEQLLGKEKAAEVSGPL 231

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
TAIR|locus:2009650	438	DJ1B "AT1G53280" [Arabidopsis	0.986	0.326	0.659	2.1e-45
TAIR|locus:2086295	392	DJ1A "AT3G14990" [Arabidopsis	0.993	0.367	0.631	1.5e-44
TAIR|locus:2124246	472	DJ1C "DJ-1 homolog C" [Arabido	0.958	0.294	0.411	8.7e-26
WB|WBGene00015184	187	djr-1.1 [Caenorhabditis elegan	0.958	0.743	0.375	6.5e-19
UNIPROTKB|D5M8S2	189	DJ-1 "Protein DJ-1" [Gallus ga	0.951	0.730	0.4	1.4e-18
UNIPROTKB|Q7TQ35	189	PARK7 "Protein DJ-1" [Mesocric	0.965	0.740	0.384	3.6e-18
UNIPROTKB|Q8UW59	189	PARK7 "Protein DJ-1" [Gallus g	0.951	0.730	0.393	5.8e-18
MGI|MGI:2135637	189	Park7 "Parkinson disease (auto	0.958	0.735	0.368	2.5e-17
FB|FBgn0039802	205	dj-1beta "dj-1beta" [Drosophil	0.944	0.668	0.340	4.1e-17
UNIPROTKB|E2QS13	189	PARK7 "Uncharacterized protein	0.965	0.740	0.370	6.7e-17

TAIR|locus:2009650 DJ1B "AT1G53280" [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 95/144 (65%), Positives = 114/144 (79%)

Query:     2 QLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRL 61
             Q+ VDACHG+K+VAD L+SD  D+VFDLI LP  +P    LK  K LE +VKKQ ++GRL
Sbjct:    90 QVGVDACHGIKMVADTLLSDITDSVFDLIMLPGGLPGGETLKNCKPLEKMVKKQDTDGRL 149

Query:    62 YAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTT 121
              AA+C +PA+A G+WGLL+G KATCYP FME+LA ACA  VESRV+ DGK+VT+RGPGTT
Sbjct:   150 NAAICCAPALAFGTWGLLEGKKATCYPVFMEKLA-ACATAVESRVEIDGKIVTSRGPGTT 208

Query:   122 MEFAVALVEQLYRKGKADEVSGPL 145
             MEF+V LVEQL  K KA EVSGPL
Sbjct:   209 MEFSVTLVEQLLGKEKAVEVSGPL 232

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0046685 "response to arsenic-containing substance" evidence=RCA

TAIR|locus:2086295 DJ1A "AT3G14990" [Arabidopsis thaliana (taxid:3702)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 91/144 (63%), Positives = 113/144 (78%)

Query:     2 QLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRL 61
             Q+ VDACHG+K+VAD L+SD  D+VFDLI LP  +P    LK  K LE +VKKQ S+GRL
Sbjct:    43 QVGVDACHGIKMVADTLLSDITDSVFDLIVLPGGLPGGETLKNCKSLENMVKKQDSDGRL 102

Query:    62 YAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTT 121
              AA+C +PA+ALG+WGLL+G KAT YP FME+LA  CA  VESRVQ DG++VT+RGPGTT
Sbjct:   103 NAAICCAPALALGTWGLLEGKKATGYPVFMEKLAATCATAVESRVQIDGRIVTSRGPGTT 162

Query:   122 MEFAVALVEQLYRKGKADEVSGPL 145
             +EF++ L+EQL+ K KADEVS  L
Sbjct:   163 IEFSITLIEQLFGKEKADEVSSIL 186

GO:0003824 "catalytic activity" evidence=ISS

GO:0009228 "thiamine biosynthetic process" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:2124246 DJ1C "DJ-1 homolog C" [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 8.7e-26, P = 8.7e-26
 Identities = 58/141 (41%), Positives = 94/141 (66%)

Query:     1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGR 60
             ++L V+   G +++AD L+S C D V+DL+ALP  MP A  L++ ++LE I+K+QA + R
Sbjct:   120 QKLEVEGSSGTRLLADVLISKCADQVYDLVALPGGMPGAVRLRDCEILEKIMKRQAEDKR 179

Query:    61 LYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGT 120
             LY A+  +PA+ L  WGLL   + T +P+F  +L P   A V++ +Q  G++ T+RGPGT
Sbjct:   180 LYGAISMAPAITLLPWGLLTRKRTTGHPAFFGKL-PTFWA-VKTNIQISGELTTSRGPGT 237

Query:   121 TMEFAVALVEQLYRKGKADEV 141
             + +FA++L EQL+ +  A  +
Sbjct:   238 SFQFALSLAEQLFGETTAKSI 258

GO:0009507 "chloroplast" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

WB|WBGene00015184 djr-1.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 53/141 (37%), Positives = 75/141 (53%)

Query:     5 VDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAA 64
             V    G  IV D  + D     FD++ LP   P +  L ES ++  ++K Q  +G L  A
Sbjct:    45 VKCARGAHIVPDVKLEDVETEKFDIVILPGGQPGSNTLAESLLVRDVLKSQVESGGLIGA 104

Query:    65 VCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEF 124
             +CA+P +AL S G+ K    T +PS  E+L        E RV   GK++T+RGPGT  EF
Sbjct:   105 ICAAP-IALLSHGV-KAELVTSHPSVKEKLEKGGYKYSEDRVVVSGKIITSRGPGTAFEF 162

Query:   125 AVALVEQLYRKGKADEVSGPL 145
             A+ +VE L  K KA  +  P+
Sbjct:   163 ALKIVELLEGKDKATSLIAPM 183

GO:0009636 "response to toxic substance" evidence=IMP

UNIPROTKB|D5M8S2 DJ-1 "Protein DJ-1" [Gallus gallus (taxid:9031)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 58/145 (40%), Positives = 83/145 (57%)

Query:     5 VDACHGVKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYA 63
             V     V I  DA + D R +  +D+I LP     A NL ES  ++ I+K Q S   L A
Sbjct:    44 VQCSRDVLICPDASLEDARKEGPYDVIVLPGGNLGAQNLSESAAVKDILKDQESRKGLIA 103

Query:    64 AVCASPAVALGSWGLLKGLKATCYPSFMEQL---APACAATVESRVQQDGKVVTTRGPGT 120
             A+CA P  AL + G+  G K T +P   +++   A  C +  ESRV++DG ++T+RGPGT
Sbjct:   104 AICAGPT-ALLAHGIGFGSKVTTHPLAKDKMMNGAHYCYS--ESRVEKDGNILTSRGPGT 160

Query:   121 TMEFAVALVEQLYRKGKADEVSGPL 145
             + EF +A+VE L  K  A++V  PL
Sbjct:   161 SFEFGLAIVEALMGKEVAEQVKAPL 185

GO:0003729 "mRNA binding" evidence=IEA

GO:0004601 "peroxidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008344 "adult locomotory behavior" evidence=IEA

GO:0032091 "negative regulation of protein binding" evidence=IEA

GO:0042743 "hydrogen peroxide metabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0050727 "regulation of inflammatory response" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0051583 "dopamine uptake involved in synaptic transmission" evidence=IEA

GO:0051899 "membrane depolarization" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0060081 "membrane hyperpolarization" evidence=IEA

GO:0060765 "regulation of androgen receptor signaling pathway" evidence=IEA

GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA

GO:2000277 "positive regulation of oxidative phosphorylation uncoupler activity" evidence=IEA

GO:2001237 "negative regulation of extrinsic apoptotic signaling pathway" evidence=IEA

UNIPROTKB|Q7TQ35 PARK7 "Protein DJ-1" [Mesocricetus auratus (taxid:10036)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 55/143 (38%), Positives = 81/143 (56%)

Query:     5 VDACHGVKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYA 63
             V     V I  D  + D +    +D++ LP     A NL ES V++ I+K+Q S   L A
Sbjct:    44 VQCSRDVMICPDTSLEDAKKQGPYDVVVLPGGNLGAQNLSESPVVKEILKEQESRKGLIA 103

Query:    64 AVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTM 122
             A+CA P  AL +  +  G K T +P   +++      +  ESRV++DG ++T+RGPGT+ 
Sbjct:   104 AICAGPT-ALLAHEIGFGSKVTTHPGAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSF 162

Query:   123 EFAVALVEQLYRKGKADEVSGPL 145
             EFA+A+VE L  K  AD+V  PL
Sbjct:   163 EFALAIVEALSGKEAADQVKAPL 185

GO:0003729 "mRNA binding" evidence=ISS

GO:0004601 "peroxidase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0007005 "mitochondrion organization" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

GO:0032091 "negative regulation of protein binding" evidence=ISS

GO:0034599 "cellular response to oxidative stress" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0043523 "regulation of neuron apoptotic process" evidence=ISS

GO:0050727 "regulation of inflammatory response" evidence=ISS

GO:0050821 "protein stabilization" evidence=ISS

GO:0060548 "negative regulation of cell death" evidence=ISS

GO:0070301 "cellular response to hydrogen peroxide" evidence=ISS

GO:2000277 "positive regulation of oxidative phosphorylation uncoupler activity" evidence=ISS

UNIPROTKB|Q8UW59 PARK7 "Protein DJ-1" [Gallus gallus (taxid:9031)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 57/145 (39%), Positives = 82/145 (56%)

Query:     5 VDACHGVKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYA 63
             V     V I  DA + D R +  +D+I LP     A NL ES  ++ I+K Q S   L A
Sbjct:    44 VQCSRDVLICPDASLEDARKEGPYDVIVLPGGNLGAQNLSESAAVKDILKDQESRKGLIA 103

Query:    64 AVCASPAVALGSWGLLKGLKATCYPSFMEQL---APACAATVESRVQQDGKVVTTRGPGT 120
             A+CA P  AL + G+  G K   +P   +++   A  C +  ESRV++DG ++T+RGPGT
Sbjct:   104 AICAGPT-ALLAHGIGFGSKVITHPLAKDKMMNGAHYCYS--ESRVEKDGNILTSRGPGT 160

Query:   121 TMEFAVALVEQLYRKGKADEVSGPL 145
             + EF +A+VE L  K  A++V  PL
Sbjct:   161 SFEFGLAIVEALMGKEVAEQVKAPL 185

GO:0006508 "proteolysis" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0006954 "inflammatory response" evidence=IEA

GO:0007338 "single fertilization" evidence=IEA

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0001963 "synaptic transmission, dopaminergic" evidence=ISS

GO:0042542 "response to hydrogen peroxide" evidence=ISS

GO:0051583 "dopamine uptake involved in synaptic transmission" evidence=ISS

GO:0008344 "adult locomotory behavior" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

GO:0050821 "protein stabilization" evidence=ISS

GO:0043523 "regulation of neuron apoptotic process" evidence=ISS

GO:0060548 "negative regulation of cell death" evidence=ISS

GO:0070301 "cellular response to hydrogen peroxide" evidence=ISS

GO:0003729 "mRNA binding" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0034599 "cellular response to oxidative stress" evidence=ISS

GO:2000277 "positive regulation of oxidative phosphorylation uncoupler activity" evidence=ISS

MGI|MGI:2135637 Park7 "Parkinson disease (autosomal recessive, early onset) 7" [Mus musculus (taxid:10090)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 53/144 (36%), Positives = 79/144 (54%)

Query:     5 VDACHGVKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYA 63
             V     V I  D  + D +    +D++ LP     A NL ES +++ I+K+Q S   L A
Sbjct:    44 VQCSRDVMICPDTSLEDAKTQGPYDVVVLPGGNLGAQNLSESPMVKEILKEQESRKGLIA 103

Query:    64 AVCASPAVALG-SWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTT 121
             A+CA P   L    G   G K T +P   +++      +  ESRV++DG ++T+RGPGT+
Sbjct:   104 AICAGPTALLAHEVGF--GCKVTTHPLAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTS 161

Query:   122 MEFAVALVEQLYRKGKADEVSGPL 145
              EFA+A+VE L  K  A++V  PL
Sbjct:   162 FEFALAIVEALVGKDMANQVKAPL 185

GO:0001963 "synaptic transmission, dopaminergic" evidence=IMP

GO:0003723 "RNA binding" evidence=TAS

GO:0003729 "mRNA binding" evidence=ISO

GO:0004601 "peroxidase activity" evidence=IMP

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0006950 "response to stress" evidence=IMP

GO:0006954 "inflammatory response" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=ISO

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0007338 "single fertilization" evidence=IEA

GO:0008233 "peptidase activity" evidence=ISO

GO:0008283 "cell proliferation" evidence=TAS

GO:0008344 "adult locomotory behavior" evidence=IMP

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030424 "axon" evidence=ISO

GO:0032091 "negative regulation of protein binding" evidence=ISO

GO:0034599 "cellular response to oxidative stress" evidence=IMP

GO:0042542 "response to hydrogen peroxide" evidence=IMP;IDA

GO:0042743 "hydrogen peroxide metabolic process" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043523 "regulation of neuron apoptotic process" evidence=ISO

GO:0043524 "negative regulation of neuron apoptotic process" evidence=ISO

GO:0050727 "regulation of inflammatory response" evidence=IMP

GO:0050821 "protein stabilization" evidence=ISO;IMP

GO:0051583 "dopamine uptake involved in synaptic transmission" evidence=IMP

GO:0051899 "membrane depolarization" evidence=IMP

GO:0051920 "peroxiredoxin activity" evidence=IMP

GO:0055114 "oxidation-reduction process" evidence=IMP

GO:0060081 "membrane hyperpolarization" evidence=IMP

GO:0060548 "negative regulation of cell death" evidence=ISO;IMP

GO:0060765 "regulation of androgen receptor signaling pathway" evidence=ISO

GO:0070301 "cellular response to hydrogen peroxide" evidence=ISO;IMP

GO:2000277 "positive regulation of oxidative phosphorylation uncoupler activity" evidence=IMP

GO:2001237 "negative regulation of extrinsic apoptotic signaling pathway" evidence=ISO

FB|FBgn0039802 dj-1beta "dj-1beta" [Drosophila melanogaster (taxid:7227)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 47/138 (34%), Positives = 74/138 (53%)

Query:     5 VDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAA 64
             V     V+I+ D  ++      FD++ LP  +  +  + ES ++  +++ Q S G L AA
Sbjct:    61 VKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAA 120

Query:    65 VCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEF 124
             +CA+P V L   G+  G   T YPS   QL    +   +  V +DG ++T+RGPGT  EF
Sbjct:   121 ICAAPTV-LAKHGVASGKSLTSYPSMKPQLVNNYSYVDDKTVVKDGNLITSRGPGTAYEF 179

Query:   125 AVALVEQLYRKGKADEVS 142
             A+ + E+L  K K  EV+
Sbjct:   180 ALKIAEELAGKEKVQEVA 197

GO:0006979 "response to oxidative stress" evidence=IDA;IMP

GO:0008344 "adult locomotory behavior" evidence=IMP

UNIPROTKB|E2QS13 PARK7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 53/143 (37%), Positives = 82/143 (57%)

Query:     5 VDACHGVKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYA 63
             V     V I  DA + D + +  +D++ LP     A NL ES  ++ I+K+Q +   L A
Sbjct:    44 VQCSRDVIICPDASLEDAKKEGPYDVVILPGGNLGAQNLCESAAVKEILKEQENRKGLIA 103

Query:    64 AVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTM 122
             A+CA P  AL +  +  G K T +P   +++      +  E+RV++DG ++T+RGPGT+ 
Sbjct:   104 AICAGPT-ALLAHEIGFGSKVTTHPLAKDKMMNGSHYSYSENRVEKDGLILTSRGPGTSF 162

Query:   123 EFAVALVEQLYRKGKADEVSGPL 145
             EFA+A+VE L  K  AD+V  PL
Sbjct:   163 EFALAIVEALSGKDVADQVKAPL 185

GO:2001237 "negative regulation of extrinsic apoptotic signaling pathway" evidence=IEA

GO:2000277 "positive regulation of oxidative phosphorylation uncoupler activity" evidence=IEA

GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA

GO:0060765 "regulation of androgen receptor signaling pathway" evidence=IEA

GO:0060081 "membrane hyperpolarization" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0051899 "membrane depolarization" evidence=IEA

GO:0051583 "dopamine uptake involved in synaptic transmission" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0050727 "regulation of inflammatory response" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042743 "hydrogen peroxide metabolic process" evidence=IEA

GO:0032091 "negative regulation of protein binding" evidence=IEA

GO:0008344 "adult locomotory behavior" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004601 "peroxidase activity" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	145
TIGR01383	179	TIGR01383, not_thiJ, DJ-1 family protein	8e-54
cd03135	163	cd03135, GATase1_DJ-1, Type 1 glutamine amidotrans	1e-40
pfam01965	142	pfam01965, DJ-1_PfpI, DJ-1/PfpI family	4e-27
PRK11574	196	PRK11574, PRK11574, oxidative-stress-resistance ch	3e-19
COG0693	188	COG0693, ThiJ, Putative intracellular protease/ami	1e-13
cd03139	183	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotra	3e-12
cd03134	165	cd03134, GATase1_PfpI_like, A type 1 glutamine ami	5e-10
TIGR01382	166	TIGR01382, PfpI, intracellular protease, PfpI fami	3e-09
cd03138	195	cd03138, GATase1_AraC_2, AraC transcriptional regu	3e-06
cd03136	185	cd03136, GATase1_AraC_ArgR_like, AraC transcriptio	4e-06
cd03140	170	cd03140, GATase1_PfpI_3, Type 1 glutamine amidotra	7e-06
COG4977	328	COG4977, COG4977, Transcriptional regulator contai	8e-06
pfam13278	164	pfam13278, DUF4066, Putative amidotransferase	9e-06
cd03169	180	cd03169, GATase1_PfpI_1, Type 1 glutamine amidotra	3e-04

>gnl|CDD|213612 TIGR01383, not_thiJ, DJ-1 family protein

 Score =  167 bits (424), Expect = 8e-54
 Identities = 71/142 (50%), Positives = 88/142 (61%), Gaps = 2/142 (1%)

Query: 3   LRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLY 62
           L V    GVKI+ADA + D     FD+I LP  MP A NL+ SK+L  I+K Q S G+L 
Sbjct: 40  LAVKGSRGVKILADASLEDVDLEKFDVIVLPGGMPGAENLRNSKLLLNILKSQESKGKLV 99

Query: 63  AAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTM 122
           AA+CA+PAV L    LL G KATCYP F E+L      +V   V  DG ++T+RGPGT +
Sbjct: 100 AAICAAPAVLLAHGVLL-GKKATCYPGFKEKL-LNGNYSVNKTVVVDGNLITSRGPGTAI 157

Query: 123 EFAVALVEQLYRKGKADEVSGP 144
           EFA+ LVE L  K KA EV+  
Sbjct: 158 EFALELVELLAGKEKAQEVAAG 179

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PMID:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus [Unknown function, General]. Length = 179

>gnl|CDD|153229 cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

 Score =  133 bits (336), Expect = 1e-40
 Identities = 58/132 (43%), Positives = 85/132 (64%), Gaps = 3/132 (2%)

Query: 1   KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGR 60
           K+L V + HG+K+ AD  +SD     +D I +P  +P A NL +++ L  ++K+  + G+
Sbjct: 35  KKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGK 94

Query: 61  LYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGT 120
           L AA+CA+PAV   + GLLKG KATCYP F ++L    A  V+  V  DG ++T+RGPGT
Sbjct: 95  LIAAICAAPAVLAKA-GLLKGKKATCYPGFEDKL--GGANYVDEPVVVDGNIITSRGPGT 151

Query: 121 TMEFAVALVEQL 132
             EFA+ +VE L
Sbjct: 152 AFEFALKIVEAL 163

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly conserved cysteine located at the nucelophile elbow region typical of these domains. This cysteine been proposed to be a site of regulation of DJ-1 activity by oxidation. DJ-1 is a dimeric enzyme. Length = 163

>gnl|CDD|216814 pfam01965, DJ-1_PfpI, DJ-1/PfpI family

 Score = 97.8 bits (244), Expect = 4e-27
 Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 2/125 (1%)

Query: 9   HGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCAS 68
             VK+ AD  + D     +D + +P     A +L++ + L   VK+   +G+  AA+C  
Sbjct: 18  GKVKVRADKTLDDVNADDYDALVIPGGHAGAEDLRDDEKLVKFVKEFYESGKPIAAICHG 77

Query: 69  PAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDG-KVVTTRGPGTTMEFAVA 127
           P V L + GLLKG + T +PS  E L  A A  V+  V  DG K+VT+ GPG+  EFA+ 
Sbjct: 78  PVV-LAAAGLLKGRRVTSFPSVKELLKNAGAEYVDQPVVVDGNKLVTSAGPGSAEEFALE 136

Query: 128 LVEQL 132
           L+E L
Sbjct: 137 LLEAL 141

The family includes the protease PfpI. This domain is also found in transcriptional regulators. This N-terminal region of the full-length AdpA proteins is necessary for dimerisation of the molecule. Length = 142

>gnl|CDD|183210 PRK11574, PRK11574, oxidative-stress-resistance chaperone; Provisional

 Score = 79.1 bits (195), Expect = 3e-19
 Identities = 45/138 (32%), Positives = 78/138 (56%), Gaps = 4/138 (2%)

Query: 10  GVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           GVK++ADA + +  D  FD+I LP  +  A   ++S +L   V++   +GR+ AA+CA+P
Sbjct: 50  GVKLLADAPLVEVADGDFDVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAP 109

Query: 70  AVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKV--VTTRGPGTTMEFAVA 127
           A  L    L      T +P+  +++        + RV  D +V  +T++GPGT ++FA+ 
Sbjct: 110 ATVLVPHDLFPIGNMTGFPTLKDKIPA--EQWQDKRVVWDARVNLLTSQGPGTAIDFALK 167

Query: 128 LVEQLYRKGKADEVSGPL 145
           +++ L  + KA EV+  L
Sbjct: 168 IIDLLVGREKAHEVASQL 185

Length = 196

>gnl|CDD|223765 COG0693, ThiJ, Putative intracellular protease/amidase [General function prediction only]

 Score = 64.5 bits (157), Expect = 1e-13
 Identities = 40/139 (28%), Positives = 58/139 (41%), Gaps = 10/139 (7%)

Query: 10  GVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           G+ +  D    D   A +D + +P        L+    L   V+   +NG+  AA+C  P
Sbjct: 50  GLVVADDKAFDDADAADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGP 109

Query: 70  AVALGSWGLLKGLKATCYPSFMEQLAPAC---------AATVESRVQQDGK-VVTTRGPG 119
           AV   +  LLKG KAT +P   E +             A      V  DG  +VT R P 
Sbjct: 110 AVLAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYVDAPLWTDEVVVDGNALVTGRNPA 169

Query: 120 TTMEFAVALVEQLYRKGKA 138
           +   FA+ L++ L    KA
Sbjct: 170 SAPAFALELLKALGGAEKA 188

Length = 188

>gnl|CDD|153233 cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 60.2 bits (147), Expect = 3e-12
 Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 5/135 (3%)

Query: 10  GVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           G+ ++ D   +D  D   D++ +P        + +  +L+ I ++QA+  +   +VC   
Sbjct: 48  GLTVLPDTSFADPPD--LDVLLVPGGGGTRALVNDPALLDFI-RRQAARAKYVTSVCTGA 104

Query: 70  AVALGSWGLLKGLKATCYPSFMEQLAPACAATVES-RVQQDGKVVTTRGPGTTMEFAVAL 128
            + L + GLL G +AT + + ++ L    A  V   R   DG + T+ G    ++ A+AL
Sbjct: 105 LL-LAAAGLLDGRRATTHWAAIDWLKEFGAIVVVDARWVVDGNIWTSGGVSAGIDMALAL 163

Query: 129 VEQLYRKGKADEVSG 143
           V +L+ +  A  V+ 
Sbjct: 164 VARLFGEELAQAVAL 178

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 183

>gnl|CDD|153228 cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

 Score = 54.1 bits (131), Expect = 5e-10
 Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 5/125 (4%)

Query: 9   HGVKIV-ADALVSDCRDAVFDLIALPV-CMPDATNLKESKVLETIVKKQASNGRLYAAVC 66
           HG   V  D  ++D     +D + +P    PD         +   V+  A  G+  AA+C
Sbjct: 44  HGYDTVTVDLTIADVDADDYDALVIPGGTNPDKLRRDP-DAVA-FVRAFAEAGKPVAAIC 101

Query: 67  ASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAV 126
             P V L S G+++G K T YPS  + L  A A  V+  V  DG ++T+R P     F  
Sbjct: 102 HGPWV-LISAGVVRGRKLTSYPSIKDDLINAGANWVDEEVVVDGNLITSRNPDDLPAFNR 160

Query: 127 ALVEQ 131
           A+++ 
Sbjct: 161 AILKA 165

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704. Length = 165

>gnl|CDD|233389 TIGR01382, PfpI, intracellular protease, PfpI family

 Score = 52.4 bits (126), Expect = 3e-09
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 3/125 (2%)

Query: 9   HGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCAS 68
           HG  +  DA + +     +D + +P           +K +  +V++    G+  AA+C  
Sbjct: 43  HGYSVTVDATIDEVNPEEYDALVIPGGRAPEYLRLNNKAVR-LVREFVEKGKPVAAICHG 101

Query: 69  PAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQ-QDGKVVTTRGPGTTMEFAVA 127
           P + L S G+L+G K T YP+ ++ +  A A  V+  V   DG +VT+R P     F   
Sbjct: 102 PQL-LISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIEVVVVDGNLVTSRVPDDLPAFNRE 160

Query: 128 LVEQL 132
            ++ L
Sbjct: 161 FLKLL 165

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 166

>gnl|CDD|153232 cd03138, GATase1_AraC_2, AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 8/138 (5%)

Query: 10  GVKIVADALVSDCRDAVFDLIALP--VCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67
           G+ I+ DA ++D      DL+ +P     PD   L ++  L   +++Q +NG   AA C 
Sbjct: 55  GILILPDATLAD--VPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAAC- 111

Query: 68  SPAVALGSWGLLKGLKATCYPSFMEQLA---PACAATVESRVQQDGKVVTTRGPGTTMEF 124
           +    L   GLL G +AT +     Q     P      +  V  DG ++T  G     + 
Sbjct: 112 TGVFLLAEAGLLDGRRATTHWWLAPQFRRRFPKVRLDPDRVVVTDGNLITAGGAMAWADL 171

Query: 125 AVALVEQLYRKGKADEVS 142
           A+ L+E+L     A  V+
Sbjct: 172 ALHLIERLAGPELAQLVA 189

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 195

>gnl|CDD|153230 cd03136, GATase1_AraC_ArgR_like, AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 43.7 bits (104), Expect = 4e-06
 Identities = 28/139 (20%), Positives = 50/139 (35%), Gaps = 15/139 (10%)

Query: 10  GVKIVADALVSDCRDAVFDLIALPVC---MPDATNLKESKVLETIVKKQASNGRLYAAVC 66
           G+++  DA + D      D +   V                L   +++ A  G     + 
Sbjct: 50  GLRVAPDAALED--APPLDYLF--VVGGLGARRAVTPA---LLAWLRRAARRGVALGGID 102

Query: 67  ASPAVALGSWGLLKGLKATCYPSFMEQLA---PACAATVESRVQQDGKVVTTRGPGTTME 123
            + A  L   GLL G +AT +   +E  A   P    T     + DG  +T  G    ++
Sbjct: 103 -TGAFLLARAGLLDGRRATVHWEHLEAFAEAFPRVQVT-RDLFEIDGDRLTCAGGTAALD 160

Query: 124 FAVALVEQLYRKGKADEVS 142
             + L+ + +    A  V+
Sbjct: 161 LMLELIARDHGAALAARVA 179

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 185

>gnl|CDD|153234 cd03140, GATase1_PfpI_3, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 43.0 bits (102), Expect = 7e-06
 Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 18/133 (13%)

Query: 10  GVKIVADALVSDCRDAVFDLIALPVCM----PDATNLKESKVLETIVKKQASNGRLYAAV 65
           G+++V D  + D     +DL+ LP       P+A +L  + ++   +K+    G+  AA+
Sbjct: 44  GLRVVPDYSLDDLPPEDYDLLILPGGDSWDNPEAPDL--AGLVRQALKQ----GKPVAAI 97

Query: 66  CASPAVALGSWGLLKGLKATC-YPSFMEQLAPACAAT---VESRVQQDGKVVTTRGPGTT 121
           C +  +AL   GLL   K T     F++  AP         E +   DG ++T    GT 
Sbjct: 98  CGAT-LALARAGLLNNRKHTSNSLDFLKAHAPYYGGAEYYDEPQAVSDGNLIT--ANGTA 154

Query: 122 -MEFAVALVEQLY 133
            +EFA  ++  L 
Sbjct: 155 PVEFAAEILRALD 167

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 170

>gnl|CDD|227311 COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

 Score = 43.8 bits (104), Expect = 8e-06
 Identities = 31/140 (22%), Positives = 51/140 (36%), Gaps = 16/140 (11%)

Query: 10  GVKIVADALVSDCRDAVFDLIALPVC----MPDATNLKESKVLETIVKKQASNGRLYAAV 65
           G+ I  D  +            LPVC         N     +L  + ++ A  G     +
Sbjct: 62  GLSIAPDGGLEAAPPIDI----LPVCGGLGPERPVNAPA--LLAWL-RRAARRGARLGGL 114

Query: 66  CASPAVALGSWGLLKGLKATCYPSFMEQLA---PACAATVESRVQQDGKVVTTRGPGTTM 122
           C + A  L   GLL G +AT +    E      P    T +     DG  +T  G    +
Sbjct: 115 C-TGAFVLAEAGLLDGRRATTHWEHAEDFQERFPDVRVT-DRLFVIDGDRITCAGGTAAI 172

Query: 123 EFAVALVEQLYRKGKADEVS 142
           +  +AL+ + +    A+ V+
Sbjct: 173 DLMLALIRRDFGAALANRVA 192

Length = 328

>gnl|CDD|222020 pfam13278, DUF4066, Putative amidotransferase

 Score = 42.6 bits (101), Expect = 9e-06
 Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 8/129 (6%)

Query: 5   VDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLY-A 63
           V + +GV I  DA ++D  +A  D + +P          +  +L  +  + A        
Sbjct: 41  VTSMNGVTITVDAPLADAPEA--DAVLVPGGPGTRAAAADPALLAQL--QLADPAGQLLG 96

Query: 64  AVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAA--TVESRVQQDGKVVTTRGPGTT 121
           AVC S A+ L   GLL G  AT + +    L  A      ++     DG + T  G    
Sbjct: 97  AVC-SGALLLAEAGLLDGRPATTHWTLKPWLREAGPKVLLIDRPFVADGNLATAGGCLAA 155

Query: 122 MEFAVALVE 130
           ++ A+ L+ 
Sbjct: 156 IDLALWLIA 164

This domain contains similarities to other amidotransferase families such as pfam00117. Some members of the family lack the likely catalytic residues. Length = 164

>gnl|CDD|153243 cd03169, GATase1_PfpI_1, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 46  KVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESR 105
           KVL  IV+  A   +  AA+C  P + L + G+LKG + T YP+   ++  A    V+  
Sbjct: 96  KVLA-IVRHFAEANKPVAAICHGPQI-LAAAGVLKGRRCTAYPACKPEVELAGGTVVDDG 153

Query: 106 VQQDGKVVTTRG 117
           V  DG +VT + 
Sbjct: 154 VVVDGNLVTAQA 165

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	145
TIGR01383	179	not_thiJ DJ-1 family protein. This model represent	100.0
cd03139	183	GATase1_PfpI_2 Type 1 glutamine amidotransferase (	100.0
cd03138	195	GATase1_AraC_2 AraC transcriptional regulators hav	100.0
cd03136	185	GATase1_AraC_ArgR_like AraC transcriptional regula	100.0
cd03137	187	GATase1_AraC_1 AraC transcriptional regulators hav	100.0
KOG2764	247	consensus Putative transcriptional regulator DJ-1	100.0
COG4977	328	Transcriptional regulator containing an amidase do	99.98
PF01965	147	DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T	99.98
TIGR01382	166	PfpI intracellular protease, PfpI family. The memb	99.97
PRK11574	196	oxidative-stress-resistance chaperone; Provisional	99.97
cd03135	163	GATase1_DJ-1 Type 1 glutamine amidotransferase (GA	99.97
PF13278	166	DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M	99.97
cd03134	165	GATase1_PfpI_like A type 1 glutamine amidotransfer	99.97
PRK09393	322	ftrA transcriptional activator FtrA; Provisional	99.96
cd03140	170	GATase1_PfpI_3 Type 1 glutamine amidotransferase (	99.96
cd03169	180	GATase1_PfpI_1 Type 1 glutamine amidotransferase (	99.96
cd03147	231	GATase1_Ydr533c_like Type 1 glutamine amidotransfe	99.96
cd03141	221	GATase1_Hsp31_like Type 1 glutamine amidotransfera	99.94
PRK04155	287	chaperone protein HchA; Provisional	99.94
cd03148	232	GATase1_EcHsp31_like Type 1 glutamine amidotransfe	99.94
COG0693	188	ThiJ Putative intracellular protease/amidase [Gene	99.93
cd03133	213	GATase1_ES1 Type 1 glutamine amidotransferase (GAT	99.88
PRK11780	217	isoprenoid biosynthesis protein with amidotransfer	99.87
cd03132	142	GATase1_catalase Type 1 glutamine amidotransferase	99.7
PRK11249	752	katE hydroperoxidase II; Provisional	99.3
cd01740	238	GATase1_FGAR_AT Type 1 glutamine amidotransferase	99.18
PRK03619	219	phosphoribosylformylglycinamidine synthase I; Prov	98.94
COG3155	217	ElbB Uncharacterized protein involved in an early	98.81
TIGR01737	227	FGAM_synth_I phosphoribosylformylglycinamidine syn	98.71
PRK01175	261	phosphoribosylformylglycinamidine synthase I; Prov	98.59
PRK13526	179	glutamine amidotransferase subunit PdxT; Provision	98.56
cd03130	198	GATase1_CobB Type 1 glutamine amidotransferase (GA	98.52
TIGR03800	184	PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl	98.38
COG0047	231	PurL Phosphoribosylformylglycinamidine (FGAM) synt	98.31
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	98.2
cd01750	194	GATase1_CobQ Type 1 glutamine amidotransferase (GA	98.19
PRK13525	189	glutamine amidotransferase subunit PdxT; Provision	98.18
PRK13527	200	glutamine amidotransferase subunit PdxT; Provision	98.11
PF07685	158	GATase_3: CobB/CobQ-like glutamine amidotransferas	98.1
PRK13143	200	hisH imidazole glycerol phosphate synthase subunit	98.1
cd01653	115	GATase1 Type 1 glutamine amidotransferase (GATase1	98.1
cd03128	92	GAT_1 Type 1 glutamine amidotransferase (GATase1)-	98.0
cd01744	178	GATase1_CPSase Small chain of the glutamine-depend	97.93
PRK08250	235	glutamine amidotransferase; Provisional	97.89
PRK13141	205	hisH imidazole glycerol phosphate synthase subunit	97.87
PF13507	259	GATase_5: CobB/CobQ-like glutamine amidotransferas	97.87
cd01741	188	GATase1_1 Subgroup of proteins having the Type 1 g	97.84
cd01749	183	GATase1_PB Glutamine Amidotransferase (GATase_I) i	97.84
cd01748	198	GATase1_IGP_Synthase Type 1 glutamine amidotransfe	97.76
PLN02832	248	glutamine amidotransferase subunit of pyridoxal 5'	97.75
PF01174	188	SNO: SNO glutamine amidotransferase family; InterP	97.7
PRK07053	234	glutamine amidotransferase; Provisional	97.67
COG0311	194	PDX2 Predicted glutamine amidotransferase involved	97.64
PRK13181	199	hisH imidazole glycerol phosphate synthase subunit	97.58
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	97.5
PF00117	192	GATase: Glutamine amidotransferase class-I; InterP	97.41
PRK09065	237	glutamine amidotransferase; Provisional	97.39
PRK05665	240	amidotransferase; Provisional	97.35
PLN02617	538	imidazole glycerol phosphate synthase hisHF	97.35
PRK12564	360	carbamoyl phosphate synthase small subunit; Review	97.27
COG0518	198	GuaA GMP synthase - Glutamine amidotransferase dom	97.25
cd01745	189	GATase1_2 Subgroup of proteins having the Type 1 g	97.24
PRK13146	209	hisH imidazole glycerol phosphate synthase subunit	97.23
PRK00784	488	cobyric acid synthase; Provisional	97.23
cd01742	181	GATase1_GMP_Synthase Type 1 glutamine amidotransfe	97.22
TIGR00888	188	guaA_Nterm GMP synthase (glutamine-hydrolyzing), N	97.18
TIGR01855	196	IMP_synth_hisH imidazole glycerol phosphate syntha	97.17
PRK13170	196	hisH imidazole glycerol phosphate synthase subunit	97.16
PRK07765	214	para-aminobenzoate synthase component II; Provisio	97.16
CHL00188	210	hisH imidazole glycerol phosphate synthase subunit	97.15
PRK06490	239	glutamine amidotransferase; Provisional	97.12
PRK14004	210	hisH imidazole glycerol phosphate synthase subunit	97.1
PRK13152	201	hisH imidazole glycerol phosphate synthase subunit	97.08
TIGR01857	1239	FGAM-synthase phosphoribosylformylglycinamidine sy	97.07
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	96.95
cd03144	114	GATase1_ScBLP_like Type 1 glutamine amidotransfera	96.92
TIGR00313	475	cobQ cobyric acid synthase CobQ.	96.88
PRK07567	242	glutamine amidotransferase; Provisional	96.84
KOG3210	226	consensus Imidazoleglycerol-phosphate synthase sub	96.82
COG0118	204	HisH Glutamine amidotransferase [Amino acid transp	96.8
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	96.79
PRK06895	190	putative anthranilate synthase component II; Provi	96.76
PRK12838	354	carbamoyl phosphate synthase small subunit; Review	96.62
PRK00758	184	GMP synthase subunit A; Validated	96.62
TIGR00566	188	trpG_papA glutamine amidotransferase of anthranila	96.53
cd01746	235	GATase1_CTP_Synthase Type 1 glutamine amidotransfe	96.52
TIGR01368	358	CPSaseIIsmall carbamoyl-phosphate synthase, small	96.52
PLN03206	1307	phosphoribosylformylglycinamidine synthase; Provis	96.49
TIGR01735	1310	FGAM_synt phosphoribosylformylglycinamidine syntha	96.48
PRK13142	192	hisH imidazole glycerol phosphate synthase subunit	96.45
PRK08007	187	para-aminobenzoate synthase component II; Provisio	96.44
PRK05637	208	anthranilate synthase component II; Provisional	96.26
CHL00197	382	carA carbamoyl-phosphate synthase arginine-specifi	96.2
PRK11366	254	puuD gamma-glutamyl-gamma-aminobutyrate hydrolase;	96.19
PRK05297	1290	phosphoribosylformylglycinamidine synthase; Provis	96.17
cd03146	212	GAT1_Peptidase_E Type 1 glutamine amidotransferase	96.16
PRK06774	191	para-aminobenzoate synthase component II; Provisio	96.14
PRK05670	189	anthranilate synthase component II; Provisional	96.14
CHL00101	190	trpG anthranilate synthase component 2	96.09
PRK06186	229	hypothetical protein; Validated	96.06
PLN02347	536	GMP synthetase	96.04
PF09825	367	BPL_N: Biotin-protein ligase, N terminal; InterPro	95.96
PRK07649	195	para-aminobenzoate/anthranilate synthase glutamine	95.95
cd01743	184	GATase1_Anthranilate_Synthase Type 1 glutamine ami	95.91
PHA03366	1304	FGAM-synthase; Provisional	95.85
PRK05282	233	(alpha)-aspartyl dipeptidase; Validated	95.85
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	95.76
PRK08857	193	para-aminobenzoate synthase component II; Provisio	95.6
PRK13566	720	anthranilate synthase; Provisional	95.56
TIGR01739	1202	tegu_FGAM_synt herpesvirus tegument protein/v-FGAM	95.5
PLN02771	415	carbamoyl-phosphate synthase (glutamine-hydrolyzin	95.49
PRK05380	533	pyrG CTP synthetase; Validated	95.47
TIGR01815	717	TrpE-clade3 anthranilate synthase, alpha proteobac	95.12
cd01747	273	GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot	95.11
COG3442	250	Predicted glutamine amidotransferase [General func	94.74
COG0505	368	CarA Carbamoylphosphate synthase small subunit [Am	94.69
PLN02335	222	anthranilate synthase	94.61
PRK05368	302	homoserine O-succinyltransferase; Provisional	94.54
cd03131	175	GATase1_HTS Type 1 glutamine amidotransferase (GAT	94.43
TIGR00337	525	PyrG CTP synthase. CTP synthase is involved in pyr	94.09
PLN02327	557	CTP synthase	94.01
PF03575	154	Peptidase_S51: Peptidase family S51; InterPro: IPR	93.76
PRK00074	511	guaA GMP synthase; Reviewed	93.61
COG2071	243	Predicted glutamine amidotransferases [General fun	93.46
PF07722	217	Peptidase_C26: Peptidase C26; InterPro: IPR011697	93.32
PRK14607	534	bifunctional glutamine amidotransferase/anthranila	93.25
cd03129	210	GAT1_Peptidase_E_like Type 1 glutamine amidotransf	92.7
TIGR01823	742	PabB-fungal aminodeoxychorismate synthase, fungal	92.3
PRK09522	531	bifunctional glutamine amidotransferase/anthranila	92.22
KOG0370	1435	consensus Multifunctional pyrimidine synthesis pro	91.91
COG0504	533	PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide	91.43
COG0512	191	PabA Anthranilate/para-aminobenzoate synthases com	91.18
cd03145	217	GAT1_cyanophycinase Type 1 glutamine amidotransfer	91.17
KOG3179	245	consensus Predicted glutamine synthetase [Nucleoti	90.34
KOG0623	541	consensus Glutamine amidotransferase/cyclase [Amin	88.34
PF12682	156	Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.	88.21
COG1492	486	CobQ Cobyric acid synthase [Coenzyme metabolism]	87.84
TIGR02069	250	cyanophycinase cyanophycinase. This model describe	87.59
COG4090	154	Uncharacterized protein conserved in archaea [Func	87.27
PF09897	147	DUF2124: Uncharacterized protein conserved in arch	86.44
COG4635	175	HemG Flavodoxin [Energy production and conversion	84.92
PLN02889	918	oxo-acid-lyase/anthranilate synthase	84.63
COG4285	253	Uncharacterized conserved protein [Function unknow	83.14
PRK06934	221	flavodoxin; Provisional	82.86
PF01058	131	Oxidored_q6: NADH ubiquinone oxidoreductase, 20 Kd	81.95
COG3340	224	PepE Peptidase E [Amino acid transport and metabol	81.89
PF01799	75	Fer2_2: [2Fe-2S] binding domain; InterPro: IPR0028	81.54
KOG2387	585	consensus CTP synthase (UTP-ammonia lyase) [Nucleo	80.5

>TIGR01383 not_thiJ DJ-1 family protein

Probab=100.00  E-value=1e-33  Score=197.88  Aligned_cols=138  Identities=51%  Similarity=0.741  Sum_probs=124.2

Q ss_pred             CeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCCc
Q 045076            3 LRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGL   82 (145)
Q Consensus         3 ~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~   82 (145)
                      ++|++++|+++.+|..+++.+.++||+||||||......+..++.+.+||+++++++++|+++|+| +++|+++|+|+|+
T Consensus        40 ~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G-~~~La~aGlL~g~  118 (179)
T TIGR01383        40 LPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAA-PAVLLAAGVLLGK  118 (179)
T ss_pred             cceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChh-HHHHHhcCCCCCC
Confidence            389999999999999999876678999999999533455567899999999999999999999996 5789999999999


Q ss_pred             eeecCcchhhhhcccCcee-ccccEEEeCCeEecCCcchHHHHHHHHHHHhcChhHHHHHhC
Q 045076           83 KATCYPSFMEQLAPACAAT-VESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSG  143 (145)
Q Consensus        83 ~~t~~~~~~~~l~~~~~~~-~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~  143 (145)
                      ++|+||.+.+.+.+.  .+ .++.++.|||++||+|+.++++|++++|+++.|+++|+++++
T Consensus       119 ~~T~~~~~~~~~~~~--~~~~~~~~v~dg~i~T~~g~~a~~d~~l~li~~~~g~~~a~~va~  178 (179)
T TIGR01383       119 KATCYPGFKEKLLNG--NYSVNEAVVVDGNIITSRGPGTAIEFALALVELLCGKEKAQEVAA  178 (179)
T ss_pred             cEEECccHHHhccCC--ceeCCCCEEEeCCEEECCChhhHHHHHHHHHHHhcCHHHHHHhhc
Confidence            999999999888653  45 478899999999999999999999999999999999999986

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.

>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=100.00  E-value=1.8e-33  Score=197.12  Aligned_cols=141  Identities=24%  Similarity=0.348  Sum_probs=127.9

Q ss_pred             CCCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076            1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK   80 (145)
Q Consensus         1 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~   80 (145)
                      ++++|++++|+.+.+|..+++.+  +||+|+||||. ....+..++.+++||+++++++++|+++|+|+ ++|+++|+|+
T Consensus        39 ~~~~v~~~~g~~i~~d~~~~~~~--~~D~lvipgg~-~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~-~~La~agll~  114 (183)
T cd03139          39 TGGPVSSRSGLTVLPDTSFADPP--DLDVLLVPGGG-GTRALVNDPALLDFIRRQAARAKYVTSVCTGA-LLLAAAGLLD  114 (183)
T ss_pred             CCCceEeCCCCEEcCCcccccCC--CCCEEEECCCc-chhhhccCHHHHHHHHHhcccCCEEEEEchHH-HHHHhcCCcC
Confidence            36789999999999999998754  89999999994 55556789999999999999999999999975 6899999999


Q ss_pred             CceeecCcchhhhhcccCcee-ccccEEEeCCeEecCCcchHHHHHHHHHHHhcChhHHHHHhCCC
Q 045076           81 GLKATCYPSFMEQLAPACAAT-VESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL  145 (145)
Q Consensus        81 g~~~t~~~~~~~~l~~~~~~~-~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~~~  145 (145)
                      |+++|+||...+.+++.+..+ ++++++.|||++||+|+.++.+|++++|++++|+++++++++.|
T Consensus       115 g~~~t~~~~~~~~~~~~~~~~~~~~~~v~dg~i~T~~g~~a~~~~~l~ii~~~~g~~~a~~~a~~~  180 (183)
T cd03139         115 GRRATTHWAAIDWLKEFGAIVVVDARWVVDGNIWTSGGVSAGIDMALALVARLFGEELAQAVALLI  180 (183)
T ss_pred             CCeeeecHhHHHHHHHhCCCCCCCCEEEecCCEEEcCcHHHHHHHHHHHHHHHhCHHHHHHHHHHh
Confidence            999999999999998775445 78889999999999999999999999999999999999999765

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=100.00  E-value=2e-33  Score=198.88  Aligned_cols=142  Identities=27%  Similarity=0.280  Sum_probs=125.2

Q ss_pred             CCCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChh--ccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccc
Q 045076            1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDAT--NLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGL   78 (145)
Q Consensus         1 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~--~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agl   78 (145)
                      ++++|++++|+++.+|..+++.+  +||+||||||.....  .+..++.+++||+++++++++|+++|+|+ ++|+++|+
T Consensus        46 ~~~~v~s~~g~~i~~d~~~~~~~--~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~-~~La~agl  122 (195)
T cd03138          46 DGGPVLLAGGILILPDATLADVP--APDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGV-FLLAEAGL  122 (195)
T ss_pred             CCCeeecCCCceecccccccccC--CCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHH-HHHHHccC
Confidence            46789999999999999887654  899999999854333  46789999999999999999999999974 68999999


Q ss_pred             cCCceeecCcchhhhhccc--Cceecc-ccEEEeCCeEecCCcchHHHHHHHHHHHhcChhHHHHHhCCC
Q 045076           79 LKGLKATCYPSFMEQLAPA--CAATVE-SRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL  145 (145)
Q Consensus        79 l~g~~~t~~~~~~~~l~~~--~~~~~~-~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~~~  145 (145)
                      |+|+++|+||...+.+++.  +..+.+ +.++.|||++||+|+.+++++++++|++++|+++|+++++.|
T Consensus       123 l~g~~~t~~~~~~~~~~~~~p~~~~~~~~~~v~dg~~~T~~g~~~~~d~al~li~~~~G~~~a~~va~~l  192 (195)
T cd03138         123 LDGRRATTHWWLAPQFRRRFPKVRLDPDRVVVTDGNLITAGGAMAWADLALHLIERLAGPELAQLVARFL  192 (195)
T ss_pred             cCCCeeeehHhhHHHHHHHCCCceeccCcEEEeCCCEEEcccHHHHHHHHHHHHHHHhCHHHHHHHHHHh
Confidence            9999999999999988775  233443 789999999999999999999999999999999999999764

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=100.00  E-value=2.6e-33  Score=196.88  Aligned_cols=140  Identities=20%  Similarity=0.267  Sum_probs=125.6

Q ss_pred             CCCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076            1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK   80 (145)
Q Consensus         1 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~   80 (145)
                      ++++|++++|+++.+|..+.+.+  +||+||||||. ... +..++.+++||+++++++++|+++|+| +++|+++|+|+
T Consensus        41 ~~~~v~~~~g~~i~~d~~~~~~~--~~D~liipgg~-~~~-~~~~~~~~~~l~~~~~~~~~i~aic~g-~~~La~aGll~  115 (185)
T cd03136          41 DGAPVTSSNGLRVAPDAALEDAP--PLDYLFVVGGL-GAR-RAVTPALLAWLRRAARRGVALGGIDTG-AFLLARAGLLD  115 (185)
T ss_pred             CCCeeecCCCcEEeCCccccccC--CCCEEEEeCCC-Ccc-ccCCHHHHHHHHHHHhcCCEEEEEcHH-HHHHHHccccC
Confidence            46889999999999999887654  89999999995 343 678999999999999999999999996 56899999999


Q ss_pred             CceeecCcchhhhhccc--CceeccccEEEeCCeEecCCcchHHHHHHHHHHHhcChhHHHHHhCCC
Q 045076           81 GLKATCYPSFMEQLAPA--CAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL  145 (145)
Q Consensus        81 g~~~t~~~~~~~~l~~~--~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~~~  145 (145)
                      |+++|+||.+.+.+++.  +..+.++.++.|||++|++|+.+++++++++|++++|+++|+++++.|
T Consensus       116 g~~~t~~~~~~~~~~~~~p~~~~~~~~~v~dg~i~Ta~g~~~~~d~~l~ii~~~~g~~~a~~va~~~  182 (185)
T cd03136         116 GRRATVHWEHLEAFAEAFPRVQVTRDLFEIDGDRLTCAGGTAALDLMLELIARDHGAALAARVAEQF  182 (185)
T ss_pred             CCeeEECcccHHHHHHHCCCCccccCeEEEcCCEEEeccHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            99999999999999765  345667889999999999999999999999999999999999998764

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee

>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=100.00  E-value=7.8e-33  Score=194.68  Aligned_cols=141  Identities=26%  Similarity=0.314  Sum_probs=124.6

Q ss_pred             CCCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076            1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK   80 (145)
Q Consensus         1 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~   80 (145)
                      ++++|++++|+++.+|..+++.+  +||+||||||. .......++.+++||+++++++++|+++|+| .++|+++|+|+
T Consensus        41 ~~~~v~~~~g~~v~~d~~~~~~~--~~D~liipGg~-~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g-~~~La~aGlL~  116 (187)
T cd03137          41 EGGPVRSSSGLSLVADAGLDALA--AADTVIVPGGP-DVDGRPPPPALLAALRRAAARGARVASVCTG-AFVLAEAGLLD  116 (187)
T ss_pred             CCCceeecCCcEEEcCcCccccC--CCCEEEECCCc-ccccccCCHHHHHHHHHHHhcCCEEEEECHH-HHHHHHccCcC
Confidence            46899999999999999887544  89999999994 4554678999999999999999999999997 56899999999


Q ss_pred             CceeecCcchhhhhccc--Cceecc-ccEEEeCCeEecCCcchHHHHHHHHHHHhcChhHHHHHhCCC
Q 045076           81 GLKATCYPSFMEQLAPA--CAATVE-SRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL  145 (145)
Q Consensus        81 g~~~t~~~~~~~~l~~~--~~~~~~-~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~~~  145 (145)
                      |+++|+||...+.+++.  +..+.+ ..++.|||++||+|+.+++++++++|++++|+++++++++.|
T Consensus       117 ~~~~t~~~~~~~~l~~~~~~~~~~~~~~~v~dg~i~Ta~g~~~~~d~~l~li~~~~g~~~a~~~a~~l  184 (187)
T cd03137         117 GRRATTHWAYAEDLARRFPAVRVDPDVLYVDDGNVWTSAGVTAGIDLCLHLVREDLGAAVANRVARRL  184 (187)
T ss_pred             CCceeehHhhHHHHHHHCCCCEEecCCEEEecCCEEEcccHHHHHHHHHHHHHHHhCHHHHHHHHHHh
Confidence            99999999999999775  234443 468899999999999999999999999999999999999764

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]

Probab=100.00  E-value=4.8e-32  Score=190.76  Aligned_cols=144  Identities=44%  Similarity=0.665  Sum_probs=134.6

Q ss_pred             CCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCC
Q 045076            2 QLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKG   81 (145)
Q Consensus         2 ~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g   81 (145)
                      ..+|.++.|..+.+|..+.|.-.++||+++||||.++.+.+..++.+.+.+++|.+.+++|++||+|+.++|+..|++.|
T Consensus        43 ~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLIaaICaap~~al~a~gl~~g  122 (247)
T KOG2764|consen   43 KEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAPLTALAAHGLLGG  122 (247)
T ss_pred             CcccccccceEecccccchhhccccccEEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeEEEeecchHHHHhhcccccc
Confidence            46889999999999998888777899999999998788999999999999999999999999999998778888899889


Q ss_pred             ceeecCcchhhhhcccCceeccccEEEeCCeEecCCcchHHHHHHHHHHHhcChhHHHHHhCCC
Q 045076           82 LKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL  145 (145)
Q Consensus        82 ~~~t~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~~~  145 (145)
                      +++|+||...+.+.+.|+.|++.+++.|||++|++|+..+++|++.|+|.+.|++.+.++.+.|
T Consensus       123 kk~T~~ps~k~~L~~~gy~yve~~vv~dG~liTSrGpgT~~eFal~lvEqL~GKeka~~v~~~l  186 (247)
T KOG2764|consen  123 KKCTAHPSVKPKLEEGGYKYVEPRVVKDGNLITSRGPGTAFEFALKLVEQLGGKEKANEVKKPL  186 (247)
T ss_pred             ceeeeccchhhhHhhcCcEEecCCeEEeCcEEeccCCCchHHHHHHHHHHhcCchhhhhhhccc
Confidence            9999999999999887899999999999999999999999999999999999999999988754

>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

Probab=99.98  E-value=3.6e-32  Score=203.61  Aligned_cols=140  Identities=19%  Similarity=0.283  Sum_probs=125.7

Q ss_pred             CCCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076            1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK   80 (145)
Q Consensus         1 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~   80 (145)
                      ++++|.+++|+.|.+|..+++..  ++|+++++||. .+......+++.+||++.+++|..|+++|+| +|+||++|||+
T Consensus        53 ~g~~V~ss~G~~i~~d~~~~~~~--~~~~v~v~~g~-~~~~~~~~~~l~~~Lr~~~~~G~~l~gictG-af~LA~aGLLd  128 (328)
T COG4977          53 DGGPVRSSSGLSIAPDGGLEAAP--PIDILPVCGGL-GPERPVNAPALLAWLRRAARRGARLGGLCTG-AFVLAEAGLLD  128 (328)
T ss_pred             CCCCcccCCCceEecCCcccccC--cceEEEEecCC-CcccccchHHHHHHHHHHHhcCCeEEEehHh-HHHHHHhcccC
Confidence            46799999999999999998876  59999998884 4554444489999999999999999999995 78999999999


Q ss_pred             CceeecCcchhhhhcccCcee---ccccEEEeCCeEecCCcchHHHHHHHHHHHhcChhHHHHHhCCC
Q 045076           81 GLKATCYPSFMEQLAPACAAT---VESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL  145 (145)
Q Consensus        81 g~~~t~~~~~~~~l~~~~~~~---~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~~~  145 (145)
                      ||++|+||.+.+.|++. +|-   .+..+++||+++||+|..+++|++++||++.+|.++|++|++.|
T Consensus       129 GrrattHW~~~~~f~e~-FP~v~~~~~lfviDg~~~T~aG~~a~iDl~L~lI~~~~G~~~a~~va~~l  195 (328)
T COG4977         129 GRRATTHWEHAEDFQER-FPDVRVTDRLFVIDGDRITCAGGTAAIDLMLALIRRDFGAALANRVARQL  195 (328)
T ss_pred             CCCeeeccccHHHHHHh-CCCCCCCCceEEecCCEEEcCCchHHHHHHHHHHHHHhCHHHHHHHHHHh
Confidence            99999999999999887 554   35679999999999999999999999999999999999999864

>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity

Probab=99.98  E-value=1e-31  Score=182.67  Aligned_cols=130  Identities=37%  Similarity=0.579  Sum_probs=116.8

Q ss_pred             CCeeeecCC---CEEeccccccCCCCCCccEEEEcCCccChhccccC-hHHHHHHHHHHHCCCeEEEEcchhHHHhhhcc
Q 045076            2 QLRVDACHG---VKIVADALVSDCRDAVFDLIALPVCMPDATNLKES-KVLETIVKKQASNGRLYAAVCASPAVALGSWG   77 (145)
Q Consensus         2 ~~~v~~~~G---~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~-~~l~~~l~~~~~~~~~v~aic~g~~~~La~ag   77 (145)
                      +.+|++++|   +.+.+|..++++++++||+||||||++++..+..+ +.++++++++++++|+|++||+|+ .+|+++|
T Consensus        10 ~~~v~~~~g~~~~~v~~d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~-~~L~~~g   88 (147)
T PF01965_consen   10 GKEVTGSHGSFGIKVTPDKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGP-AVLAAAG   88 (147)
T ss_dssp             SSEEEBTTSHHHHEEESSEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCH-HHHHHTT
T ss_pred             CCeEEcCCCcCCEEEECCCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCc-chhhccC
Confidence            468999999   99999999999999999999999997557777745 999999999999999999999987 4899999


Q ss_pred             ccCCceeecCcchhhhhcccCceecc--ccEEEeC-CeEecCCcchHHHHHHHHHHHh
Q 045076           78 LLKGLKATCYPSFMEQLAPACAATVE--SRVQQDG-KVVTTRGPGTTMEFAVALVEQL  132 (145)
Q Consensus        78 ll~g~~~t~~~~~~~~l~~~~~~~~~--~~~v~dg-~iiT~~g~~~~~~~~l~li~~~  132 (145)
                      +|+|+++|++|...+.++..+..|.+  ..+++|+ |+||++++.++.+|++++|+.+
T Consensus        89 ll~g~~~T~~~~~~~~~~~~g~~~~~~~~~~vvD~~nlIT~~~~~~~~~fa~~ive~L  146 (147)
T PF01965_consen   89 LLKGKKVTSYPNDEEDLENAGANYVDQDDPVVVDGGNLITGRGPGSAIEFALAIVEAL  146 (147)
T ss_dssp             TTTTSEEC-SGGGHHHHHHTTTEEBSCSSSEEEETTTEEEESSGGGHHHHHHHHHHHH
T ss_pred             ccCCceeecCccHHHHHHHCCCEEEecCCCeEEECCeEEECCChhhHHHHHHHHHHHc
Confidence            99999999999999988777788877  7899999 9999999999999999999986

Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....

>TIGR01382 PfpI intracellular protease, PfpI family

Probab=99.97  E-value=3.7e-31  Score=182.94  Aligned_cols=129  Identities=26%  Similarity=0.409  Sum_probs=117.4

Q ss_pred             CCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCC
Q 045076            2 QLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKG   81 (145)
Q Consensus         2 ~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g   81 (145)
                      +++|+++.|+.+.++..+++.++.+||+|+||||. ++..+..++.+.+||+++++++++|+++|+|+ ++|+++|+|+|
T Consensus        36 ~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~-~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~-~~La~aglL~g  113 (166)
T TIGR01382        36 AGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGR-APEYLRLNNKAVRLVREFVEKGKPVAAICHGP-QLLISAGVLRG  113 (166)
T ss_pred             CCceeccCCceeeccCChhhCCHHHCcEEEECCCC-CHHHhccCHHHHHHHHHHHHcCCEEEEEChHH-HHHHhcCccCC
Confidence            57899999999999999988877789999999994 55556678999999999999999999999975 68999999999


Q ss_pred             ceeecCcchhhhhcccCceecc-ccEEEeCCeEecCCcchHHHHHHHHHHHh
Q 045076           82 LKATCYPSFMEQLAPACAATVE-SRVQQDGKVVTTRGPGTTMEFAVALVEQL  132 (145)
Q Consensus        82 ~~~t~~~~~~~~l~~~~~~~~~-~~~v~dg~iiT~~g~~~~~~~~l~li~~~  132 (145)
                      +++|+||...+.+++.+..+++ +.++.|||+|||+|+.++.+|+.++++.+
T Consensus       114 ~~~T~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~~~~~~~~fa~~~~~~l  165 (166)
T TIGR01382       114 KKLTSYPAIIDDVKNAGAEYVDIEVVVVDGNLVTSRVPDDLPAFNREFLKLL  165 (166)
T ss_pred             CEEEcCccHHHHHHHCCCeEEcCCCEEEECCEEEeCCcccHHHHHHHHHHHh
Confidence            9999999999999887778887 69999999999999999999999999975

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.

>PRK11574 oxidative-stress-resistance chaperone; Provisional

Probab=99.97  E-value=1e-30  Score=185.37  Aligned_cols=141  Identities=32%  Similarity=0.554  Sum_probs=123.6

Q ss_pred             CeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCCc
Q 045076            3 LRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGL   82 (145)
Q Consensus         3 ~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~   82 (145)
                      .+|++++|+.+.+|..+++++.++||+|+||||..+...+..++.+.+||+++++++++|++||+|+.++|+.+|+++|+
T Consensus        43 ~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~~gll~~~  122 (196)
T PRK11574         43 LEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIG  122 (196)
T ss_pred             ceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHhCCccCCC
Confidence            38999999999999999887667899999999954455567788999999999999999999999865567779999999


Q ss_pred             eeecCcchhhhhcccCceeccccEEEeC--CeEecCCcchHHHHHHHHHHHhcChhHHHHHhCCC
Q 045076           83 KATCYPSFMEQLAPACAATVESRVQQDG--KVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL  145 (145)
Q Consensus        83 ~~t~~~~~~~~l~~~~~~~~~~~~v~dg--~iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~~~  145 (145)
                      ++|.++.+.+.+..  ..+.++++++|+  |++||+|+.+++||++++|++++|+++|+++++.|
T Consensus       123 ~~t~~~~~~~~~p~--~~~~~~~~v~d~~~~iiT~~G~~a~~dlal~li~~~~G~~~a~~va~~~  185 (196)
T PRK11574        123 NMTGFPTLKDKIPA--EQWQDKRVVWDARVNLLTSQGPGTAIDFALKIIDLLVGREKAHEVASQL  185 (196)
T ss_pred             eEeeCcChHHhccc--CcccCCCEEEeCCccEEeCCCcchHHHHHHHHHHHhcCHHHHHHHHhhh
Confidence            99998888777633  566777888886  99999999999999999999999999999999864

>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

Probab=99.97  E-value=8.1e-31  Score=180.45  Aligned_cols=128  Identities=41%  Similarity=0.689  Sum_probs=113.5

Q ss_pred             CCeee-ecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076            2 QLRVD-ACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK   80 (145)
Q Consensus         2 ~~~v~-~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~   80 (145)
                      ++++. ++.|+.+.+|..+++.++++||+||||||...+..+.+++.+++||+++++++++|+++|+| .++|+++|+|+
T Consensus        35 ~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~g-~~~La~aglL~  113 (163)
T cd03135          35 KKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAA-PAVLAKAGLLK  113 (163)
T ss_pred             CCceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcCCEEEEEchh-HHHHHHcCCcC
Confidence            56665 58999999999999887679999999999524555678999999999999999999999997 56899999999


Q ss_pred             CceeecCcchhhhhcccCceeccccEEEeCCeEecCCcchHHHHHHHHHHHh
Q 045076           81 GLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQL  132 (145)
Q Consensus        81 g~~~t~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~  132 (145)
                      ||++|+||...+.+ . +..+.++.+++|||++||+|+.+++++++++|+++
T Consensus       114 g~~~T~~~~~~~~~-~-~~~~~~~~~v~dg~l~T~~g~~s~~d~al~li~~l  163 (163)
T cd03135         114 GKKATCYPGFEDKL-G-GANYVDEPVVVDGNIITSRGPGTAFEFALKIVEAL  163 (163)
T ss_pred             CCeEEECchHHHhc-C-CCeEecCCEEEECCEEEcCCcccHHHHHHHHHHhC
Confidence            99999999988887 2 36777889999999999999999999999999874

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly

>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C

Probab=99.97  E-value=2e-30  Score=179.43  Aligned_cols=126  Identities=27%  Similarity=0.425  Sum_probs=107.7

Q ss_pred             CCCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076            1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK   80 (145)
Q Consensus         1 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~   80 (145)
                      +++||++++|+.+.++..+++..  ++|+||||||. .......++.+++||+++++++++|+++|+| +++|+++|+|+
T Consensus        38 ~~~~v~~s~g~~i~~~~~~~~~~--~~D~lvvpg~~-~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G-~~~La~aGlL~  113 (166)
T PF13278_consen   38 TGGPVTSSSGLRIQPDGSLDDAP--DFDILVVPGGP-GFDAAAKDPALLDWLRQQHAQGTYIAAICTG-ALLLAEAGLLD  113 (166)
T ss_dssp             SSCEEEBTTSEEEEESEETCCCS--CCSEEEEE-ST-THHHHTT-HHHHHHHHHHHCCTSEEEEETTH-HHHHHHTTTTT
T ss_pred             CCCeeeecCCeEEEeccChhhcc--cCCEEEeCCCC-CchhcccCHHHHHHhhhhhccceEEeeeehH-HHHHhhhhccC
Confidence            46789999999999999999854  89999999995 4455678899999999999999999999996 67999999999


Q ss_pred             CceeecCcchhhhhcccCce--ec-cccEEEeCCeEecCCcchHHHHHHHHHH
Q 045076           81 GLKATCYPSFMEQLAPACAA--TV-ESRVQQDGKVVTTRGPGTTMEFAVALVE  130 (145)
Q Consensus        81 g~~~t~~~~~~~~l~~~~~~--~~-~~~~v~dg~iiT~~g~~~~~~~~l~li~  130 (145)
                      |+++|+||...+.+++....  +. ++.++.|||++||+|+.+++|++++|||
T Consensus       114 g~~~tt~~~~~~~l~~~~p~~~~~~~~~~v~dg~i~Ta~g~~~~~dl~l~li~  166 (166)
T PF13278_consen  114 GRRATTHWSLAEALRERFPNVNVVSDQLFVDDGNIITAGGPTAAIDLALYLIE  166 (166)
T ss_dssp             TSEE---GGGHHHHHHCTTCEEE-TSSSEEEETTEEEESSCCHHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHhCCCccccCCCEEEECCCeEEecHHHHHHHHHHHHhC
Confidence            99999999999999887322  23 7789999999999999999999999996

...

>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

Probab=99.97  E-value=1.4e-30  Score=179.94  Aligned_cols=127  Identities=27%  Similarity=0.424  Sum_probs=115.7

Q ss_pred             CCeeeecCCC-EEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076            2 QLRVDACHGV-KIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK   80 (145)
Q Consensus         2 ~~~v~~~~G~-~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~   80 (145)
                      +++|+++.|+ .+.+|..+++.+..+||+|+||||. +...+..++.+++||+++++++++|+++|+| +++|+++|+|+
T Consensus        37 ~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~-~~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G-~~~La~aglL~  114 (165)
T cd03134          37 GGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGT-NPDKLRRDPDAVAFVRAFAEAGKPVAAICHG-PWVLISAGVVR  114 (165)
T ss_pred             CcccccCcCceeecCCCChHHCCHHHCCEEEECCCC-ChhhhccCHHHHHHHHHHHHcCCeEEEEchH-HHHHHhcCccC
Confidence            5789999999 9999999988776689999999995 5655677899999999999999999999997 56899999999


Q ss_pred             CceeecCcchhhhhcccCceeccccEEEeCCeEecCCcchHHHHHHHHHH
Q 045076           81 GLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVE  130 (145)
Q Consensus        81 g~~~t~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~  130 (145)
                      |+++|+||...+.+++.+..+.++++++|||+|||+|+.++++|++.+|+
T Consensus       115 g~~~T~h~~~~~~~~~~~~~~~~~~~v~dg~iiT~~~~~~~~~f~~~~~~  164 (165)
T cd03134         115 GRKLTSYPSIKDDLINAGANWVDEEVVVDGNLITSRNPDDLPAFNRAILK  164 (165)
T ss_pred             CCEeeCCHhHHHHHHHcCCeEecCCEEEECCEEEecCcchHHHHHHHHHh
Confidence            99999999999999877677888899999999999999999999999986

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.

>PRK09393 ftrA transcriptional activator FtrA; Provisional

Probab=99.96  E-value=1.9e-29  Score=190.96  Aligned_cols=140  Identities=20%  Similarity=0.301  Sum_probs=121.7

Q ss_pred             CCCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076            1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK   80 (145)
Q Consensus         1 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~   80 (145)
                      ++++|++++|+.|.+|..+++.+  +||+||||||. +... ..++.+.+||+++++++++|++||+| .++||++|+|+
T Consensus        52 ~~~~v~ss~g~~i~~d~~~~~~~--~~D~livpGg~-~~~~-~~~~~l~~~l~~~~~~~~~i~aic~g-~~~La~aGlL~  126 (322)
T PRK09393         52 EPGPLRAAGGITVVADGGLELLD--RADTIVIPGWR-GPDA-PVPEPLLEALRAAHARGARLCSICSG-VFVLAAAGLLD  126 (322)
T ss_pred             CCCceEeCCCcEEeCCCCccccC--CCCEEEECCCC-cccc-cCCHHHHHHHHHHHHcCCEEEEEcHH-HHHHHhccCCC
Confidence            46799999999999999998754  89999999994 4433 46899999999999999999999997 46899999999


Q ss_pred             CceeecCcchhhhhccc--Cceecc-ccEEEeCCeEecCCcchHHHHHHHHHHHhcChhHHHHHhCCC
Q 045076           81 GLKATCYPSFMEQLAPA--CAATVE-SRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL  145 (145)
Q Consensus        81 g~~~t~~~~~~~~l~~~--~~~~~~-~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~~~  145 (145)
                      |+++|+||.+.+.+++.  ...+.+ ..++.|||++||+|+.+++++++++|++.+|.+.++++++.|
T Consensus       127 ~~~~Tth~~~~~~~~~~~p~~~~~~~~~~v~~g~iiT~~G~~a~~d~~l~li~~~~g~~~a~~va~~l  194 (322)
T PRK09393        127 GRRATTHWRYAERLQARYPAIRVDPDVLYVDEGQILTSAGSAAGIDLCLHLVRRDFGSEAANRVARRL  194 (322)
T ss_pred             CCeeeecHhhHHHHHHHCCCCEEeCCceEEecCCEEecccHHHHHHHHHHHHHHHhCHHHHHHHHHHh
Confidence            99999999999999764  122333 368889999999999999999999999999999999988654

>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.96  E-value=2.1e-29  Score=175.02  Aligned_cols=128  Identities=28%  Similarity=0.427  Sum_probs=109.2

Q ss_pred             CCCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076            1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK   80 (145)
Q Consensus         1 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~   80 (145)
                      ++++|++++|+.+.++..+++.+.++||+|+||||. .... ..++.+.+||+++++++++|+++|+| .++|+++|+|+
T Consensus        35 ~~~~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~-~~~~-~~~~~l~~~l~~~~~~~~~i~aic~G-~~~La~aGlL~  111 (170)
T cd03140          35 TGEPVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGD-SWDN-PEAPDLAGLVRQALKQGKPVAAICGA-TLALARAGLLN  111 (170)
T ss_pred             CCCeeEecCCeEEccccchhHCCHhHccEEEEcCCc-cccc-CCcHHHHHHHHHHHHcCCEEEEEChH-HHHHHHCCCcC
Confidence            467999999999999999998765689999999995 3333 47899999999999999999999997 56899999999


Q ss_pred             CceeecCcc-hhhhhccc---CceeccccEEEeCCeEecCCcchHHHHHHHHHHHh
Q 045076           81 GLKATCYPS-FMEQLAPA---CAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQL  132 (145)
Q Consensus        81 g~~~t~~~~-~~~~l~~~---~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~  132 (145)
                      ||++|+||. +.+.+++.   +..++++.+++|||+|||+|. ++++|++++|+++
T Consensus       112 g~~~Tt~~~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~g~-a~~d~al~~i~~l  166 (170)
T cd03140         112 NRKHTSNSLDFLKAHAPYYGGAEYYDEPQAVSDGNLITANGT-APVEFAAEILRAL  166 (170)
T ss_pred             CCcccCChHHHHHHhccccCcccccccCcEEEcCCEEECCCc-CHHHHHHHHHHHc
Confidence            999999986 56666542   234568899999999999875 5899999999986

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=99.96  E-value=1.7e-28  Score=171.91  Aligned_cols=123  Identities=24%  Similarity=0.349  Sum_probs=110.3

Q ss_pred             cCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCCceeecC
Q 045076            8 CHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCY   87 (145)
Q Consensus         8 ~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~~~t~~   87 (145)
                      ..|+.+.++..++++++.+||+|+||||. +...+..++.+.+||+++++++++|+++|+|+ ++|+++|+|+||++|+|
T Consensus        58 ~~g~~i~~~~~~~~~~~~~~D~liv~GG~-~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~-~~La~agll~g~~~T~h  135 (180)
T cd03169          58 KPGHRFAVTADFDEVDPDDYDALVIPGGR-APEYLRLDEKVLAIVRHFAEANKPVAAICHGP-QILAAAGVLKGRRCTAY  135 (180)
T ss_pred             cCCcEEeccCCcccCCHhHCCEEEEcCCC-ChhhhccCHHHHHHHHHHHHcCCEEEEECcHH-HHHHHcCccCCCEEecc
Confidence            46999999999998877789999999995 55545578899999999999999999999975 68999999999999999


Q ss_pred             cchhhhhcccCceeccccEEEeCCeEecCCcchHHHHHHHHHHHh
Q 045076           88 PSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQL  132 (145)
Q Consensus        88 ~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~  132 (145)
                      |...+.+++.+..+.+++++.|||+|||+|+.++.+|+.++++.+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~v~D~~iiT~~~~~~~~~f~~~~~~~l  180 (180)
T cd03169         136 PACKPEVELAGGTVVDDGVVVDGNLVTAQAWPDHPAFLREFLKLL  180 (180)
T ss_pred             cchHHHHHHCCCEEeeccEEEECCEEEecCCchHHHHHHHHHHhC
Confidence            999999987766677888999999999999999999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein

Probab=99.96  E-value=7.8e-29  Score=179.42  Aligned_cols=124  Identities=21%  Similarity=0.249  Sum_probs=107.2

Q ss_pred             cCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc-------cccC
Q 045076            8 CHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW-------GLLK   80 (145)
Q Consensus         8 ~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a-------gll~   80 (145)
                      +.+..+.++..+++++.++||+||||||++++.++.+++.+.++|++|++++|+|++||+|++ +|+.+       ++++
T Consensus        76 ~~~~~l~~~~~l~dv~~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~-~L~~a~~~~~g~~ll~  154 (231)
T cd03147          76 DFWKKLKNIKKADEVNPDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPA-ILANLKDPKTGKPLIK  154 (231)
T ss_pred             HHHHHHhccCChhHCCHhhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHH-HHHhhhcccCCCcccC
Confidence            345567788889999889999999999976677889999999999999999999999999987 67776       9999


Q ss_pred             CceeecCcch-------------------hhhhcccCceecc------ccEEEeCCeEecCCcchHHHHHHHHHHHh
Q 045076           81 GLKATCYPSF-------------------MEQLAPACAATVE------SRVQQDGKVVTTRGPGTTMEFAVALVEQL  132 (145)
Q Consensus        81 g~~~t~~~~~-------------------~~~l~~~~~~~~~------~~~v~dg~iiT~~g~~~~~~~~l~li~~~  132 (145)
                      ||++|+|+..                   ++.+++.|+.|.+      ..+++|||+||++++.++.+|++.+++.+
T Consensus       155 Gk~vT~~~~~ee~~~~~~~~~~~~~~~~~e~~l~~~Ga~~~~~~~~~~~~VvvDgnLITgq~p~sa~~~a~~iv~~l  231 (231)
T cd03147         155 GKTVTGFTDKGEEIMGVMEILKKRNLESIEDIAERAGANFIRPPGPWDDFTVVDGRIVTGSNPASATSTAEAAIKAL  231 (231)
T ss_pred             CCEEEeeCcHHHHhhhhhhhhcccCCccHHHHHHHcCCEEEccCCCCCCcEEEcCCEEeCCCcccHHHHHHHHHHhC
Confidence            9999999975                   3445556777764      34999999999999999999999999874

Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.

>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

Probab=99.94  E-value=1.6e-27  Score=171.96  Aligned_cols=123  Identities=28%  Similarity=0.369  Sum_probs=105.3

Q ss_pred             CCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhcc------ccCCc
Q 045076            9 HGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWG------LLKGL   82 (145)
Q Consensus         9 ~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~ag------ll~g~   82 (145)
                      .|..+.++..++++++++||+|+||||......+..++.+++||+++++++++|++||+|+ ++|+++|      +|+||
T Consensus        73 ~~~~~~~~~~~~~~~~~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~-~~La~ag~~~~~~ll~gr  151 (221)
T cd03141          73 FKKKLANTKKLSDVDPSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGP-AALLNVKLSDGKSLVAGK  151 (221)
T ss_pred             HHHHHHccCChhHCCHhHceEEEECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchH-HHHHhccCcCCCeeeCCc
Confidence            4455778889999988899999999996444567789999999999999999999999976 5899999      79999


Q ss_pred             eeecCcchhhh---------------hcccCceecc-----ccEEEeCCeEecCCcchHHHHHHHHHHHh
Q 045076           83 KATCYPSFMEQ---------------LAPACAATVE-----SRVQQDGKVVTTRGPGTTMEFAVALVEQL  132 (145)
Q Consensus        83 ~~t~~~~~~~~---------------l~~~~~~~~~-----~~~v~dg~iiT~~g~~~~~~~~l~li~~~  132 (145)
                      ++|+||...+.               +++.|..|.+     ..+|+|+|+||++++.++.+|++++|+.+
T Consensus       152 ~~T~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~vv~D~~lvT~~~p~s~~~~a~~~i~~l  221 (221)
T cd03141         152 TVTGFTNEEEEAAGLKKVVPFLLEDELKELGANYVKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL  221 (221)
T ss_pred             EEeccCCHHHHhcCccCcCCcCHHHHHHHcCCEeecCCCCCCCEEEeCCEeeCCCchhHHHHHHHHHHhC
Confidence            99999976544               5555666654     45999999999999999999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different

>PRK04155 chaperone protein HchA; Provisional

Probab=99.94  E-value=3.1e-26  Score=170.10  Aligned_cols=109  Identities=24%  Similarity=0.343  Sum_probs=97.8

Q ss_pred             CCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhcc------ccCCceeecCcch-------
Q 045076           24 DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWG------LLKGLKATCYPSF-------   90 (145)
Q Consensus        24 ~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~ag------ll~g~~~t~~~~~-------   90 (145)
                      +++||+||||||++.+..+..++.+.++|+++++++|+|++||||++ +|..++      +++||++|+++..       
T Consensus       145 ~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa-~Ll~a~~~~g~~ll~GkkvT~fp~~~e~~~~~  223 (287)
T PRK04155        145 DSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPA-ALLAAGVDHGDNPLNGYSICAFPDALDKQTPE  223 (287)
T ss_pred             cccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHH-HHHHcCCcCCCcccCCCEEeeCCCHHHhhccc
Confidence            57999999999987778899999999999999999999999999987 577788      9999999999876       


Q ss_pred             ------------hhhhcccCceecc----ccEEEeCCeEecCCcchHHHHHHHHHHHhc
Q 045076           91 ------------MEQLAPACAATVE----SRVQQDGKVVTTRGPGTTMEFAVALVEQLY  133 (145)
Q Consensus        91 ------------~~~l~~~~~~~~~----~~~v~dg~iiT~~g~~~~~~~~l~li~~~~  133 (145)
                                  .+.|++.|+.+++    ..+|+|||+||++++.++.+|++.+++.+.
T Consensus       224 ~~~~~~~~~~~~e~~L~~~Ga~~~~~~~~~~VvvDg~LITGq~P~sa~~fa~~~~~~Ll  282 (287)
T PRK04155        224 IGYMPGHLTWLFGEELKKMGVNIVNDDITGRVHKDRKLLTGDSPLASNALGKLAAQELL  282 (287)
T ss_pred             cccccccccchHHHHHHHcCCEEEcCCCCCCEEEeCCEEeCCChhHHHHHHHHHHHHHH
Confidence                        4556667778877    579999999999999999999999999876

>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31)

Probab=99.94  E-value=2.5e-26  Score=166.49  Aligned_cols=123  Identities=18%  Similarity=0.303  Sum_probs=103.4

Q ss_pred             CCEEeccccccCC------CCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccc-----
Q 045076           10 GVKIVADALVSDC------RDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGL-----   78 (145)
Q Consensus        10 G~~i~~d~~~~~~------~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agl-----   78 (145)
                      +..+..+..++++      ++++||+||+|||++++.++..++.+.++++++++++|+|++||||++ +|..+++     
T Consensus        74 ~~~l~~~~~l~~v~~~~~~~~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~-~L~~a~l~~g~~  152 (232)
T cd03148          74 KSKLRNPKKLADVVASLNADDSEYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPA-AFLAARHGGGKN  152 (232)
T ss_pred             HHHhcCCCCHHHhhhhccCChhhceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHH-HHHhccCCCCCe
Confidence            3446677777777      456999999999987788899999999999999999999999999987 5777888     


Q ss_pred             -cCCceeecCcchhhh--------------------hcccCceeccc----cEEEeCCeEecCCcchHHHHHHHHHHHhc
Q 045076           79 -LKGLKATCYPSFMEQ--------------------LAPACAATVES----RVQQDGKVVTTRGPGTTMEFAVALVEQLY  133 (145)
Q Consensus        79 -l~g~~~t~~~~~~~~--------------------l~~~~~~~~~~----~~v~dg~iiT~~g~~~~~~~~l~li~~~~  133 (145)
                       ++||++|+++..++.                    +++.|+.|...    .+|+|||+||+++|.|+..++..+|+.+.
T Consensus       153 ll~Gk~vT~f~~~eE~~~~~~~~~~~~~~pf~le~~L~~~Ga~~~~~~~~~~vv~Dg~LiTGqnP~Sa~~~a~~~~~~~~  232 (232)
T cd03148         153 PLEGYSVCVFPDSLDEGANIEIGYMPGHLTWLVGEELKKMGMNIINDDITGRVHKDRKLLTGDSPLASNALGKLAAQEML  232 (232)
T ss_pred             eeCCcEEecCCCHHHHhhhhccccccCcccccHHHHHHHcCCEEECCCCCcCEEEeCCEEeCCCcHhHHHHHHHHHHHhC
Confidence             999999999887553                    23345555443    79999999999999999999999998763

Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.

>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]

Probab=99.93  E-value=7.4e-25  Score=154.33  Aligned_cols=132  Identities=32%  Similarity=0.467  Sum_probs=116.9

Q ss_pred             eeeecCC-CEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhcc-ccCC
Q 045076            4 RVDACHG-VKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWG-LLKG   81 (145)
Q Consensus         4 ~v~~~~G-~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~ag-ll~g   81 (145)
                      ++.++.| ..+.++..++++++++||+|++|||..++..+..++.+++|++++++++++|++||+|++ +|+.+| +++|
T Consensus        43 ~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~-~L~~ag~ll~g  121 (188)
T COG0693          43 SVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPA-VLAAAGLLLKG  121 (188)
T ss_pred             eeecccCcceEecccccccCCHhHCCEEEECCCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhHH-HHhccccccCC
Confidence            5566665 777777899888878999999999954677777779999999999999999999999876 799999 9999


Q ss_pred             ceeecCcchhhhhcc----cCceeccc-----cEEEeCC-eEecCCcchHHHHHHHHHHHhcChh
Q 045076           82 LKATCYPSFMEQLAP----ACAATVES-----RVQQDGK-VVTTRGPGTTMEFAVALVEQLYRKG  136 (145)
Q Consensus        82 ~~~t~~~~~~~~l~~----~~~~~~~~-----~~v~dg~-iiT~~g~~~~~~~~l~li~~~~g~~  136 (145)
                      |++|+++...+.+..    .|..|++.     .++.||+ ++|+.++.++.+++.++++.+.+..
T Consensus       122 ~~~t~~~~~~~~~~~~~~~~ga~~vd~~~~~~~vv~dg~~lvt~~~p~~~~~~~~~~~~~l~~~~  186 (188)
T COG0693         122 RKATAFPDIEEDVKNGDGKAGANYVDAPLWTDEVVVDGNALVTGRNPASAPAFALELLKALGGAE  186 (188)
T ss_pred             ceEeecCchHHHHHhHHHhcCceEeccccCcCCEEEECCeEEEcCCcccHHHHHHHHHHHHhccc
Confidence            999999999888877    67888887     8999999 9999999999999999999988754

>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1

Probab=99.88  E-value=2.3e-22  Score=143.68  Aligned_cols=122  Identities=22%  Similarity=0.239  Sum_probs=96.1

Q ss_pred             eeeecCCCEEecc-------ccccCCCCCCccEEEEcCCccChhcc----------ccChHHHHHHHHHHHCCCeEEEEc
Q 045076            4 RVDACHGVKIVAD-------ALVSDCRDAVFDLIALPVCMPDATNL----------KESKVLETIVKKQASNGRLYAAVC   66 (145)
Q Consensus         4 ~v~~~~G~~i~~d-------~~~~~~~~~~~D~liipGG~~~~~~~----------~~~~~l~~~l~~~~~~~~~v~aic   66 (145)
                      .+..+.++.+.++       ..++++++++||+||||||++.+.++          +.++.+++++++|++++|+|++||
T Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIC  132 (213)
T cd03133          53 AEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAIC  132 (213)
T ss_pred             ccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEEC
Confidence            3445667777665       67888888899999999996444433          248899999999999999999999


Q ss_pred             chhHHHhhhccccCCceeecCc--chhhhhcccCceeccc---cEEEe--CCeEecCCcc---hHHHHHHH
Q 045076           67 ASPAVALGSWGLLKGLKATCYP--SFMEQLAPACAATVES---RVQQD--GKVVTTRGPG---TTMEFAVA  127 (145)
Q Consensus        67 ~g~~~~La~agll~g~~~t~~~--~~~~~l~~~~~~~~~~---~~v~d--g~iiT~~g~~---~~~~~~l~  127 (145)
                      +|++ +|+++.. +||++|+|+  ..++.+++.|+.|+++   .+++|  ||+|||+...   +..+.++.
T Consensus       133 hgp~-~L~~~~~-kGr~vT~~~~~~~~~~l~~aGa~~~d~~~~~vvvd~dg~lITs~~~~~~~~~~~~~~~  201 (213)
T cd03133         133 IAPA-LAAKILG-EGVEVTIGNDAGTAAAIEKMGAEHVNCPVEEIVVDEKNKVVTTPAYMLADSIHEIADG  201 (213)
T ss_pred             HHHH-HHHHHhc-cCCeEEccCCHHHHHHHHHCCCEEEeCCCCeEEEECCCCEEeCccccCCCCHHHHHHh
Confidence            9987 6777655 999999999  8899998888888753   66776  7999998754   34444443

Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.

>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional

Probab=99.87  E-value=8.4e-22  Score=141.43  Aligned_cols=113  Identities=19%  Similarity=0.216  Sum_probs=91.7

Q ss_pred             eeecCCCEEecc-------ccccCCCCCCccEEEEcCCccChhc----------cccChHHHHHHHHHHHCCCeEEEEcc
Q 045076            5 VDACHGVKIVAD-------ALVSDCRDAVFDLIALPVCMPDATN----------LKESKVLETIVKKQASNGRLYAAVCA   67 (145)
Q Consensus         5 v~~~~G~~i~~d-------~~~~~~~~~~~D~liipGG~~~~~~----------~~~~~~l~~~l~~~~~~~~~v~aic~   67 (145)
                      +..+.++.+.++       ..++++++++||+||||||++.+.+          ++.++.+.+++++|++++|+|++||+
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~~l~~v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAICh  136 (217)
T PRK11780         57 MGETRNVLVESARIARGEIKDLAEADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICI  136 (217)
T ss_pred             cccccceeeehhhhhccCCCchhHCChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECH
Confidence            444555555544       5788888889999999999754433          34589999999999999999999999


Q ss_pred             hhHHHhhhccccCCceeecC--cchhhhhcccCceeccc---cEEEe--CCeEecCCcc
Q 045076           68 SPAVALGSWGLLKGLKATCY--PSFMEQLAPACAATVES---RVQQD--GKVVTTRGPG  119 (145)
Q Consensus        68 g~~~~La~agll~g~~~t~~--~~~~~~l~~~~~~~~~~---~~v~d--g~iiT~~g~~  119 (145)
                      |++ +|+.+.. +||++|++  +.....+++.|+.|++.   .+|+|  +|+||+....
T Consensus       137 gp~-iL~~~~~-~gr~~T~~~~~~~~~~~~~aGa~~vd~~~~~vvvD~~~~lvt~~~~~  193 (217)
T PRK11780        137 APA-MLPKILG-AGVKLTIGNDEDTAAAIEKMGGEHVDCPVDDIVVDEENKVVTTPAYM  193 (217)
T ss_pred             HHH-HHHHHhc-cCcEEEecCChhhHHHHHHCCCEEEcCCCCeEEEECCCCEEeCCccc
Confidence            987 5777522 89999999  99999999999999875   67888  7899998643

>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases

Probab=99.70  E-value=1.6e-16  Score=107.20  Aligned_cols=78  Identities=19%  Similarity=0.171  Sum_probs=68.4

Q ss_pred             CCCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhcccc
Q 045076            1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLL   79 (145)
Q Consensus         1 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll   79 (145)
                      ++++|++++|+++.++..+++.+..+||+|+||||......+..++.+.+||+++++++++|+++|+| .++|+++|+|
T Consensus        37 ~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~G-~~~La~aGll  114 (142)
T cd03132          37 TLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEG-SDLLEAAGIP  114 (142)
T ss_pred             CcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHccChHHHHHHHHHHhcCCeEEEcCch-HHHHHHcCCC
Confidence            46789999999999999999887678999999999644444567899999999999999999999997 5689999996

Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C

>PRK11249 katE hydroperoxidase II; Provisional

Probab=99.30  E-value=8.2e-12  Score=102.71  Aligned_cols=78  Identities=13%  Similarity=0.069  Sum_probs=70.3

Q ss_pred             CCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076            2 QLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK   80 (145)
Q Consensus         2 ~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~   80 (145)
                      +++|+++.|..|.+|.++++.+...||+|+||||..+...+..++.++.||+++++++|+|+++|+| ..+|+++||..
T Consensus       634 ~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG-~~LLaaAGL~~  711 (752)
T PRK11249        634 MGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADLADNGDARYYLLEAYKHLKPIALAGDA-RKLKAALKLPD  711 (752)
T ss_pred             CCeEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEeCcc-HHHHHhcCCCC
Confidence            5789999999999999999987778999999999556677888999999999999999999999997 56899999955

>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase

Probab=99.18  E-value=7.1e-11  Score=86.20  Aligned_cols=90  Identities=22%  Similarity=0.182  Sum_probs=64.7

Q ss_pred             CCCccEEEEcCCccChhccc-----cChH-HHHHHHHHHHCCCeEEEEcchhHHHhhhccccCCceeecCcchhhhhccc
Q 045076           24 DAVFDLIALPVCMPDATNLK-----ESKV-LETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPA   97 (145)
Q Consensus        24 ~~~~D~liipGG~~~~~~~~-----~~~~-l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~~   97 (145)
                      .++||.|+||||....+.+.     .... +.++|+++.+++++|.+||.|.+ +|+++|+|.|+. +.++......+..
T Consensus        41 l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~g~pvlGIC~G~Q-lL~~~gll~g~~-~~~~~~~~~~~~~  118 (238)
T cd01740          41 LDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAERGGLVLGICNGFQ-ILVELGLLPGAL-IRNKGLKFICRWQ  118 (238)
T ss_pred             HhhCCEEEECCCCCcccccccccccccChhHHHHHHHHHhCCCeEEEECcHHH-HHHHcCCCcccc-ccCCCCceecccc
Confidence            45899999999953222222     1223 88999999999999999999876 799999999966 6666544433222


Q ss_pred             CceeccccEEEeCCeEecC
Q 045076           98 CAATVESRVQQDGKVVTTR  116 (145)
Q Consensus        98 ~~~~~~~~~v~dg~iiT~~  116 (145)
                       ..|++..++.+++++|+.
T Consensus       119 -~~~v~~~v~~~~si~t~~  136 (238)
T cd01740         119 -NRFVTLRVENNDSPFTKG  136 (238)
T ss_pred             -CceEEEEEcCCCCceecC
Confidence             245666667778888876

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site

>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=98.94  E-value=2.8e-09  Score=76.93  Aligned_cols=60  Identities=22%  Similarity=0.234  Sum_probs=47.8

Q ss_pred             CCCCccEEEEcCCccChh-----ccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCCce
Q 045076           23 RDAVFDLIALPVCMPDAT-----NLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLK   83 (145)
Q Consensus        23 ~~~~~D~liipGG~~~~~-----~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~~   83 (145)
                      +.++||+|+||||.....     ....++.+.+||+++.++++++++||+|. .+|+++|||+|+-
T Consensus        38 ~l~~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~-qlLa~~GLL~g~l  102 (219)
T PRK03619         38 DLDGVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGKPVLGICNGF-QILTEAGLLPGAL  102 (219)
T ss_pred             CCCCCCEEEECCCCchhhhhccchhhhchHHHHHHHHHHHCCCEEEEECHHH-HHHHHcCCCCCeE
Confidence            345899999999953222     12345789999999999999999999975 5899999999853

>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.81  E-value=1.8e-08  Score=68.44  Aligned_cols=109  Identities=24%  Similarity=0.284  Sum_probs=73.8

Q ss_pred             ccCCCCCCccEEEEcCCccChhccc----------cChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc-cccCCceee--
Q 045076           19 VSDCRDAVFDLIALPVCMPDATNLK----------ESKVLETIVKKQASNGRLYAAVCASPAVALGSW-GLLKGLKAT--   85 (145)
Q Consensus        19 ~~~~~~~~~D~liipGG~~~~~~~~----------~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a-gll~g~~~t--   85 (145)
                      +.+.++++||++++|||++...++.          -++.+..+.+.+++.+|+++-+|-+++ +|.+. |.  ..+.|  
T Consensus        78 l~~a~~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~-m~pki~g~--~~~~TIG  154 (217)
T COG3155          78 LAQADAEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPA-MLPKIFGF--PLRLTIG  154 (217)
T ss_pred             hhhcCHHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHH-HHHHHcCC--ceeEEec
Confidence            4556678999999999987665553          268999999999999999999999987 46653 32  23444  


Q ss_pred             cCcchhhhhcccCceecc---ccEEE--eCCeEecCCcchHHHHHHHHHHHhcC
Q 045076           86 CYPSFMEQLAPACAATVE---SRVQQ--DGKVVTTRGPGTTMEFAVALVEQLYR  134 (145)
Q Consensus        86 ~~~~~~~~l~~~~~~~~~---~~~v~--dg~iiT~~g~~~~~~~~l~li~~~~g  134 (145)
                      ..+...+.+++.|...++   ..+|+  +++++|..    ++-++..|-+.-.|
T Consensus       155 nD~dTa~a~~~mG~eHv~cPvd~iV~D~~~KvvtTP----AYMLA~~IaeAAsG  204 (217)
T COG3155         155 NDIDTAEALEEMGAEHVPCPVDDIVVDEDNKVVTTP----AYMLAQNIAEAASG  204 (217)
T ss_pred             CCccHHHHHHHhCcccCCCCccceeecCCCceecCh----HHHHHHHHHHHHhh
Confidence            345667778777766543   23444  46788874    33344444444333

>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I

Probab=98.71  E-value=6.9e-08  Score=70.07  Aligned_cols=58  Identities=21%  Similarity=0.241  Sum_probs=46.1

Q ss_pred             CCCccEEEEcCCccChhc-----cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCCc
Q 045076           24 DAVFDLIALPVCMPDATN-----LKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGL   82 (145)
Q Consensus        24 ~~~~D~liipGG~~~~~~-----~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~   82 (145)
                      .++||+|+||||....+.     +..+..+.++|+++.+++++|.+||.|.. +|+++|+|.|.
T Consensus        38 l~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~Q-lLa~~GlL~G~  100 (227)
T TIGR01737        38 LPDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQ-ILVEAGLLPGA  100 (227)
T ss_pred             CCCCCEEEECCCCcccccccccchhcchHHHHHHHHHHHcCCEEEEECHHHH-HHHHcCCCCCc
Confidence            458999999999532211     23356788999999999999999999754 89999999984

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.

>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=98.59  E-value=1.2e-07  Score=70.08  Aligned_cols=57  Identities=19%  Similarity=0.344  Sum_probs=43.9

Q ss_pred             CCCccEEEEcCCccChhccccC--------hHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCC
Q 045076           24 DAVFDLIALPVCMPDATNLKES--------KVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKG   81 (145)
Q Consensus        24 ~~~~D~liipGG~~~~~~~~~~--------~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g   81 (145)
                      .++||+|+||||....+.+...        +.+.+.|+++.+++++|.+||+|.+ +|+++|+|.|
T Consensus        46 l~~~DgLvipGGfs~gD~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~Q-lLa~~GlLpg  110 (261)
T PRK01175         46 VSDYDCLVIPGGFSAGDYIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQ-VLVELGLLPG  110 (261)
T ss_pred             hhhCCEEEECCCCCcccccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHH-HHHHCCCCCC
Confidence            4589999999995322222221        2344788999999999999999877 7999999987

>PRK13526 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.56  E-value=5.9e-08  Score=67.67  Aligned_cols=54  Identities=20%  Similarity=0.223  Sum_probs=42.2

Q ss_pred             CCccEEEEcCCccChh--ccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhh----ccccCC
Q 045076           25 AVFDLIALPVCMPDAT--NLKESKVLETIVKKQASNGRLYAAVCASPAVALGS----WGLLKG   81 (145)
Q Consensus        25 ~~~D~liipGG~~~~~--~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~----agll~g   81 (145)
                      ++||.|++||| .+..  .+.++..+.+.|+++.+ ++++++||.|+. +|++    .|++++
T Consensus        38 ~~~D~LILPGG-~~t~~~~ll~~~~l~~~Ik~~~~-~kpilGICaG~q-lL~~~s~~Lg~idg   97 (179)
T PRK13526         38 DSIDRLVIPGG-ESTTLLNLLNKHQIFDKLYNFCS-SKPVFGTCAGSI-ILSKGEGYLNLLDL   97 (179)
T ss_pred             hCCCEEEECCC-hHHHHHHHhhhcCcHHHHHHHHc-CCcEEEEcHHHH-HHHccCCCCCCccE
Confidence            48999999999 4444  55666779999999875 789999999876 6887    355554

>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase

Probab=98.52  E-value=3e-07  Score=65.37  Aligned_cols=50  Identities=22%  Similarity=0.234  Sum_probs=41.1

Q ss_pred             CccEEEEcCCccC--hhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           26 VFDLIALPVCMPD--ATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        26 ~~D~liipGG~~~--~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++|+||||||...  +..+.++..+.+.|+++.+++++|.+||.|.+ +|++.
T Consensus        40 ~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~q-lL~~~   91 (198)
T cd03130          40 DADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGLM-YLGES   91 (198)
T ss_pred             CCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEcccHH-HHHHH
Confidence            5999999999533  34566677899999999999999999999876 67764

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.

>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2

Probab=98.38  E-value=5.2e-07  Score=63.49  Aligned_cols=51  Identities=14%  Similarity=0.089  Sum_probs=40.5

Q ss_pred             CCccEEEEcCCccCh-hccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDA-TNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~-~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++||+|+||||.... ..+..+..+.++|+++.++++++.+||.|.. +|++.
T Consensus        35 ~~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~G~q-lL~~~   86 (184)
T TIGR03800        35 DEIDGLIIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGLI-MLAKE   86 (184)
T ss_pred             ccCCEEEECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEECHHHH-HHHhh
Confidence            489999999995321 2334566788999999999999999999866 68877

Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.

>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=98.31  E-value=1.7e-06  Score=62.01  Aligned_cols=55  Identities=25%  Similarity=0.346  Sum_probs=44.8

Q ss_pred             CccEEEEcCCccChhccc-----cChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCC
Q 045076           26 VFDLIALPVCMPDATNLK-----ESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKG   81 (145)
Q Consensus        26 ~~D~liipGG~~~~~~~~-----~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g   81 (145)
                      +||+|++|||..--+.++     .-.++++-++++.++++++.+||+|-+ +|.++|||.|
T Consensus        43 ~~d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQ-iL~e~gLlPG  102 (231)
T COG0047          43 DFDGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQ-ILSEAGLLPG  102 (231)
T ss_pred             CccEEEEcCCCCcccccCcchHHhhHHHHHHHHHHHHCCCeEEEEcchhH-HHHHcCcCCc
Confidence            699999999973222222     236788888999999999999999877 6889999999

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=98.20  E-value=3.8e-06  Score=66.76  Aligned_cols=51  Identities=22%  Similarity=0.275  Sum_probs=42.5

Q ss_pred             CCccEEEEcCCccC--hhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPD--ATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~--~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      .+||+|++|||.+.  ...+..+..+.+.|+++.++|++|.++|.|.. +|++.
T Consensus       286 ~~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~g~~i~aiCgG~~-~L~~~  338 (451)
T PRK01077        286 PDCDGLYLGGGYPELFAAELAANTSMRASIRAAAAAGKPIYAECGGLM-YLGES  338 (451)
T ss_pred             CCCCEEEeCCCchhhHHHHHhhCchhHHHHHHHHHcCCCEEEEcHHHH-HHHhh
Confidence            38999999999743  34567788899999999999999999999765 67763

>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ)

Probab=98.19  E-value=3.5e-06  Score=59.73  Aligned_cols=66  Identities=23%  Similarity=0.257  Sum_probs=46.1

Q ss_pred             cCCCEEeccccccCCCCCCccEEEEcCCccChhcccc--ChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076            8 CHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKE--SKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus         8 ~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~--~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ..|..+..-....+  ++++|+|++|||......+..  +..+.+.|+++.+++++|.+||.|.. +|++.
T Consensus        21 ~~G~~~~~~~~~~~--~~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgiC~G~q-lL~~~   88 (194)
T cd01750          21 EPGVDVRYVEVPEG--LGDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGICGGYQ-MLGKY   88 (194)
T ss_pred             cCCceEEEEeCCCC--CCCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEECHHHH-Hhhhh
Confidence            34555554444444  348999999999522222222  45688999999999999999999866 67765

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.

>PRK13525 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.18  E-value=3.3e-06  Score=59.64  Aligned_cols=51  Identities=18%  Similarity=0.097  Sum_probs=39.7

Q ss_pred             CCccEEEEcCCccCh-hccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDA-TNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~-~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++||.|++|||.... ..+..+..+.++++++.+++++|.+||.|.+ +|+.+
T Consensus        37 ~~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~Q-lL~~~   88 (189)
T PRK13525         37 DEIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCAGMI-LLAKE   88 (189)
T ss_pred             ccCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECHHHH-HHHhh
Confidence            489999999994322 1234456678999999999999999999876 67763

>PRK13527 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.11  E-value=4.4e-06  Score=59.44  Aligned_cols=51  Identities=16%  Similarity=0.162  Sum_probs=39.8

Q ss_pred             CCccEEEEcCCccCh-hccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDA-TNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~-~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      .+||+||||||.... ..+..+..+.++|+++.++++++.+||.|.+ +|+.+
T Consensus        42 ~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~Q-ll~~~   93 (200)
T PRK13527         42 PDCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGLI-LLAKE   93 (200)
T ss_pred             ccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHHH-HHHhh
Confidence            489999999995322 1233455689999999999999999999876 68776

>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []

Probab=98.10  E-value=5.2e-06  Score=56.97  Aligned_cols=52  Identities=25%  Similarity=0.286  Sum_probs=42.1

Q ss_pred             CCCccEEEEcCCccCh--hccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           24 DAVFDLIALPVCMPDA--TNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        24 ~~~~D~liipGG~~~~--~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++++|+|+||||.+..  ..+.++..+.+.|+++.++|.+|.++|.| ..+|.+.
T Consensus         5 ~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG-~~~Lg~~   58 (158)
T PF07685_consen    5 PPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGG-YQYLGES   58 (158)
T ss_pred             CCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchH-HHHHHHH
Confidence            4589999999997432  23456788999999999999999999996 4567765

Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process

>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=98.10  E-value=4.4e-06  Score=59.48  Aligned_cols=51  Identities=18%  Similarity=0.199  Sum_probs=39.6

Q ss_pred             CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++||+|++|||......+...+.+.++++++.++++++.+||.|.. +|+++
T Consensus        37 ~~~d~iii~G~~~~~~~~~~~~~~~~~i~~~~~~~~PilgIC~G~q-~l~~~   87 (200)
T PRK13143         37 LDADGIVLPGVGAFGAAMENLSPLRDVILEAARSGKPFLGICLGMQ-LLFES   87 (200)
T ss_pred             ccCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHH-HHhhh
Confidence            4899999999622222244556788999999999999999999876 68864

>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.10  E-value=1.1e-05  Score=50.17  Aligned_cols=49  Identities=18%  Similarity=0.317  Sum_probs=38.8

Q ss_pred             CCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHh
Q 045076           24 DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVAL   73 (145)
Q Consensus        24 ~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~L   73 (145)
                      ..+||++++|||.........++.++++++++..++++++++|.|.. +|
T Consensus        44 ~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~g~~-~l   92 (115)
T cd01653          44 LDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQ-LL   92 (115)
T ss_pred             hhccCEEEECCCCCchhhhccCHHHHHHHHHHHHcCCEEEEECchhH-hH
Confidence            45899999999953333222478999999999999999999999754 45

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende

>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.00  E-value=1.8e-05  Score=47.09  Aligned_cols=46  Identities=17%  Similarity=0.282  Sum_probs=36.9

Q ss_pred             CCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchh
Q 045076           24 DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP   69 (145)
Q Consensus        24 ~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~   69 (145)
                      ..+||++++|||.........+..+.++++++..++++++++|.|.
T Consensus        44 ~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~   89 (92)
T cd03128          44 LDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGA   89 (92)
T ss_pred             cccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEeccc
Confidence            4589999999995333322247899999999999999999999964

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin

>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

Probab=97.93  E-value=2.4e-05  Score=54.65  Aligned_cols=55  Identities=15%  Similarity=-0.052  Sum_probs=40.8

Q ss_pred             cccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           18 LVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        18 ~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ..++.+..+||.|+++||..++.   +.....++++++.+++++|.+||.|.+ +|+.+
T Consensus        31 ~~~~~~~~~~dgiil~GG~~~~~---~~~~~~~~~~~~~~~~~PvlGIC~G~Q-~l~~~   85 (178)
T cd01744          31 DAEEILKLDPDGIFLSNGPGDPA---LLDEAIKTVRKLLGKKIPIFGICLGHQ-LLALA   85 (178)
T ss_pred             CHHHHhhcCCCEEEECCCCCChh---HhHHHHHHHHHHHhCCCCEEEECHHHH-HHHHH
Confidence            33333345799999999943332   346788899999999999999999877 56654

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is

>PRK08250 glutamine amidotransferase; Provisional

Probab=97.89  E-value=3.3e-05  Score=56.40  Aligned_cols=51  Identities=18%  Similarity=0.290  Sum_probs=38.8

Q ss_pred             CCccEEEEcCCccChhc-cccC-----hHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATN-LKES-----KVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~-~~~~-----~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++||++||.||..+... ....     ....+||+++.++++++.+||.|.. +|+.+
T Consensus        44 ~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a  100 (235)
T PRK08250         44 DGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQ-LIGEA  100 (235)
T ss_pred             cccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhHH-HHHHH
Confidence            58999999999533321 1122     3668999999999999999999877 68775

>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.87  E-value=1.7e-05  Score=56.66  Aligned_cols=51  Identities=16%  Similarity=0.208  Sum_probs=37.7

Q ss_pred             CCccEEEEcCCccChhcc--ccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATNL--KESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~--~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++||.|||||+......+  ...+.+.++|+++.++++++.+||.|.+ +|++.
T Consensus        36 ~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pvlGIC~G~Q-ll~~~   88 (205)
T PRK13141         36 LAADGVILPGVGAFPDAMANLRERGLDEVIKEAVASGKPLLGICLGMQ-LLFES   88 (205)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHH-Hhhhc
Confidence            489999999973212221  1233578999999999999999999876 68875

>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A

Probab=97.87  E-value=3.2e-05  Score=57.18  Aligned_cols=58  Identities=21%  Similarity=0.259  Sum_probs=42.1

Q ss_pred             CCCCccEEEEcCCccChhcc----------ccChHHHHHHHHHHHC-CCeEEEEcchhHHHhhhccccCC
Q 045076           23 RDAVFDLIALPVCMPDATNL----------KESKVLETIVKKQASN-GRLYAAVCASPAVALGSWGLLKG   81 (145)
Q Consensus        23 ~~~~~D~liipGG~~~~~~~----------~~~~~l~~~l~~~~~~-~~~v~aic~g~~~~La~agll~g   81 (145)
                      ..++||+|++|||...-+.+          ..++.+.+.|++|.++ ++++.+||+|-+ +|.++|||.+
T Consensus        43 ~l~~~~~lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQ-iL~~~Gllp~  111 (259)
T PF13507_consen   43 DLDDFDGLVIPGGFSYGDYLRSGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQ-ILVELGLLPG  111 (259)
T ss_dssp             -GCC-SEEEE-EE-GGGGTTSTTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHH-HHCCCCCSTT
T ss_pred             chhhCcEEEECCccCccccchHHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhH-HHHHhCcCCC
Confidence            45689999999996422222          2245678889999998 999999999766 8999999998

>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=97.84  E-value=3.7e-05  Score=53.96  Aligned_cols=52  Identities=12%  Similarity=0.134  Sum_probs=39.7

Q ss_pred             CCCccEEEEcCCccCh--hccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           24 DAVFDLIALPVCMPDA--TNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        24 ~~~~D~liipGG~~~~--~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      .++||.|+++||..+.  ......+.+.++|+++.++++++.+||.|.. +|+.+
T Consensus        44 ~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~q-~l~~~   97 (188)
T cd01741          44 LDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQ-LLARA   97 (188)
T ss_pred             cccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccHH-HHHHH
Confidence            4589999999995333  1122236789999999999999999999876 57654

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis

Probab=97.84  E-value=2.6e-05  Score=54.78  Aligned_cols=51  Identities=16%  Similarity=0.117  Sum_probs=38.9

Q ss_pred             CCccEEEEcCCccCh-hccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDA-TNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~-~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      +++|.||+|||.... .....+..+.++|+++.++++++.++|.|.. +|+++
T Consensus        34 ~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~G~q-lL~~~   85 (183)
T cd01749          34 EGIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCAGLI-LLAKE   85 (183)
T ss_pred             ccCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECHHHH-HHHHH
Confidence            489999999994211 1223455678999999999999999999765 68765

Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.

>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS)

Probab=97.76  E-value=4.3e-05  Score=54.18  Aligned_cols=50  Identities=16%  Similarity=0.180  Sum_probs=38.1

Q ss_pred             CCccEEEEcCCccChhcc---ccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATNL---KESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~---~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++||.|||||+ ......   ...+.+.++++++.+++++|.+||.|.+ +|+.+
T Consensus        35 ~~~d~iiipG~-~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G~q-~l~~~   87 (198)
T cd01748          35 LSADKLILPGV-GAFGDAMANLRERGLIEALKEAIASGKPFLGICLGMQ-LLFES   87 (198)
T ss_pred             ccCCEEEECCC-CcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHH-Hhccc
Confidence            47999999997 233221   2334678999999999999999999866 68876

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex

Probab=97.75  E-value=3.6e-05  Score=56.51  Aligned_cols=50  Identities=16%  Similarity=0.155  Sum_probs=38.5

Q ss_pred             CccEEEEcCCccC-hhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           26 VFDLIALPVCMPD-ATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        26 ~~D~liipGG~~~-~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++|.||+|||... +..+.....+.+.|+++.++++++.++|.|.. +|++.
T Consensus        38 ~~DgLILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~PvLGiC~Gmq-lLa~~   88 (248)
T PLN02832         38 GVSGLIIPGGESTTMAKLAERHNLFPALREFVKSGKPVWGTCAGLI-FLAER   88 (248)
T ss_pred             cCCEEEeCCCHHHHHHHHHhhcchHHHHHHHHHcCCCEEEEChhHH-HHHHH
Confidence            7999999999642 33344444688889998889999999999865 67664

>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]

Probab=97.70  E-value=5.7e-05  Score=52.89  Aligned_cols=49  Identities=16%  Similarity=0.158  Sum_probs=36.1

Q ss_pred             CccEEEEcCCcc-ChhccccChHHHHHHHHHHHCC-CeEEEEcchhHHHhhh
Q 045076           26 VFDLIALPVCMP-DATNLKESKVLETIVKKQASNG-RLYAAVCASPAVALGS   75 (145)
Q Consensus        26 ~~D~liipGG~~-~~~~~~~~~~l~~~l~~~~~~~-~~v~aic~g~~~~La~   75 (145)
                      +.|.||||||.. .+..+.....+.+-|+++.++| ++|.+.|+| ..+||+
T Consensus        33 ~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAG-lIlLa~   83 (188)
T PF01174_consen   33 GLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAG-LILLAK   83 (188)
T ss_dssp             T-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHH-HHHHEE
T ss_pred             cCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHH-HHHhhh
Confidence            799999999953 2344556678899999999998 999999996 456776

The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.

>PRK07053 glutamine amidotransferase; Provisional

Probab=97.67  E-value=0.00012  Score=53.50  Aligned_cols=51  Identities=8%  Similarity=0.017  Sum_probs=39.0

Q ss_pred             CCccEEEEcCCccChhc---cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATN---LKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~---~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      .+||.|||+||..+..+   ...-..+.++|+++.+.++++.+||-|.. +|+.+
T Consensus        46 ~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a   99 (234)
T PRK07053         46 LEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQRLAAGLPTLGICLGAQ-LIARA   99 (234)
T ss_pred             cCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHCCCCEEEECccHH-HHHHH
Confidence            47999999998433322   12234788999999999999999999877 57765

>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]

Probab=97.64  E-value=5e-05  Score=52.89  Aligned_cols=61  Identities=16%  Similarity=0.142  Sum_probs=44.5

Q ss_pred             EEeccccccCCCCCCccEEEEcCCcc-ChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhh
Q 045076           12 KIVADALVSDCRDAVFDLIALPVCMP-DATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGS   75 (145)
Q Consensus        12 ~i~~d~~~~~~~~~~~D~liipGG~~-~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~   75 (145)
                      .+..-...++++  +.|+||||||.. ....+.....+.+-|+++..+|+++.+.|+| ..+||+
T Consensus        26 e~~~Vk~~~dL~--~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~Pv~GTCAG-lIlLak   87 (194)
T COG0311          26 EVVEVKRPEDLE--GVDGLIIPGGESTTIGRLLKRYGLLEPLREFIADGLPVFGTCAG-LILLAK   87 (194)
T ss_pred             ceEEEcCHHHhc--cCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHcCCceEEechh-hhhhhh
Confidence            333334445554  899999999953 1344556677888899999999999999996 456775

>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.58  E-value=9.9e-05  Score=52.43  Aligned_cols=50  Identities=16%  Similarity=0.134  Sum_probs=36.7

Q ss_pred             CCccEEEEcCCccChhc-c--ccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATN-L--KESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~-~--~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      .++|.||+||+ +.... .  .....+.++|+++.+.+++|.++|.|-+ +|+.+
T Consensus        36 ~~~d~lilpG~-g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Q-ll~~~   88 (199)
T PRK13181         36 AGADKVILPGV-GAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGMQ-LLFES   88 (199)
T ss_pred             ccCCEEEECCC-CCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhHH-Hhhhh
Confidence            37999999996 33221 1  1223467888888889999999999876 68875

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=97.50  E-value=0.00024  Score=56.60  Aligned_cols=50  Identities=16%  Similarity=0.215  Sum_probs=40.2

Q ss_pred             CccEEEEcCCccCh--hccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           26 VFDLIALPVCMPDA--TNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        26 ~~D~liipGG~~~~--~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++|+|+||||.+..  ..+..+..+.+.|+++.++|.+|.++|.|- .+|++.
T Consensus       286 ~~d~l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~~G~pv~g~CgG~-~~L~~~  337 (449)
T TIGR00379       286 DVDAVYIGGGFPELFAEELSQNQALRDSIKTFIHQGLPIYGECGGL-MYLSQS  337 (449)
T ss_pred             CCCEEEeCCcHHHHHHHHHHhhhHHHHHHHHHHHcCCCEEEEcHHH-HHHHhh
Confidence            89999999996422  335567889999999999999999999974 467763

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []

Probab=97.41  E-value=0.00033  Score=49.20  Aligned_cols=49  Identities=10%  Similarity=0.059  Sum_probs=39.4

Q ss_pred             CCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           24 DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        24 ~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ..+||.+||+||..++.+   .+...++++++.++++++.+||-|-. +|+.+
T Consensus        40 ~~~~d~iii~Gg~~~~~d---~~~~~~~i~~~~~~~~PilGIC~G~Q-~la~~   88 (192)
T PF00117_consen   40 LDDYDGIIISGGPGSPYD---IEGLIELIREARERKIPILGICLGHQ-ILAHA   88 (192)
T ss_dssp             TTTSSEEEEECESSSTTS---HHHHHHHHHHHHHTTSEEEEETHHHH-HHHHH
T ss_pred             hcCCCEEEECCcCCcccc---ccccccccccccccceEEEEEeehhh-hhHHh
Confidence            458999999999543332   57888899999999999999999877 57764

The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....

>PRK09065 glutamine amidotransferase; Provisional

Probab=97.39  E-value=0.00031  Score=51.31  Aligned_cols=51  Identities=16%  Similarity=0.150  Sum_probs=38.4

Q ss_pred             CCccEEEEcCCccChhc-cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATN-LKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~-~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++||.|||.||..+... ......+.+||+++.+.+++|.+||-|-. +|+.+
T Consensus        53 ~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a  104 (237)
T PRK09065         53 DDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQ-LLAHA  104 (237)
T ss_pred             hhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHH-HHHHH
Confidence            48999999999533211 11225678999999999999999999877 57765

>PRK05665 amidotransferase; Provisional

Probab=97.35  E-value=0.00041  Score=50.82  Aligned_cols=51  Identities=20%  Similarity=0.143  Sum_probs=39.3

Q ss_pred             CCccEEEEcCCccChhc-cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATN-LKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~-~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++||.+||.||..+... ...-..+.+||+++.++++++.+||-|-. +||.+
T Consensus        56 ~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQ-lla~A  107 (240)
T PRK05665         56 EKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQ-LLALL  107 (240)
T ss_pred             ccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHH-HHHHH
Confidence            47999999999533321 12235788999999999999999999877 68875

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=97.35  E-value=0.00043  Score=56.22  Aligned_cols=50  Identities=12%  Similarity=0.158  Sum_probs=37.3

Q ss_pred             CCccEEEEcCCccChhc---cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATN---LKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~---~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      .++|.||+||+ .....   ......+.+.|+++.++++++.+||.|.+ +|+.+
T Consensus        43 ~~~D~lIlpG~-gs~~~~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~Q-lLa~~   95 (538)
T PLN02617         43 LNADRLIFPGV-GAFGSAMDVLNNRGMAEALREYIQNDRPFLGICLGLQ-LLFES   95 (538)
T ss_pred             ccCCEEEECCC-CCHHHHHHHHHHcCHHHHHHHHHHcCCCEEEECHHHH-HHhhh
Confidence            48999999997 33322   12233477888888889999999999877 68864

>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed

Probab=97.27  E-value=0.00056  Score=52.94  Aligned_cols=55  Identities=9%  Similarity=-0.020  Sum_probs=40.0

Q ss_pred             cccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           18 LVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        18 ~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      .++++...++|.||++||..++..   .+..+++++++.+++++|.+||-|-+ +|+.+
T Consensus       210 ~~~~i~~~~~DGIvLSgGPgdp~~---~~~~~~~i~~~~~~~~PilGIClG~Q-lLa~a  264 (360)
T PRK12564        210 TAEEILALNPDGVFLSNGPGDPAA---LDYAIEMIRELLEKKIPIFGICLGHQ-LLALA  264 (360)
T ss_pred             CHHHHHhcCCCEEEEeCCCCChHH---HHHHHHHHHHHHHcCCeEEEECHHHH-HHHHH
Confidence            334433236999999999534432   36778899999888999999999877 46654

>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=97.25  E-value=0.0009  Score=47.66  Aligned_cols=59  Identities=10%  Similarity=0.018  Sum_probs=43.0

Q ss_pred             cccccCCCCCCccEEEEcCCccChhcccc--ChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           16 DALVSDCRDAVFDLIALPVCMPDATNLKE--SKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        16 d~~~~~~~~~~~D~liipGG~~~~~~~~~--~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      +......+..++|.+||.||. .......  .+...++|++....+++|.+||-|.. +||.+
T Consensus        35 ~~~~~~~~~~~~~giIlsGgp-~sv~~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Q-l~A~~   95 (198)
T COG0518          35 TGDAEELPLDSPDGIIISGGP-MSVYDEDPWLPREKDLIKDAGVPGKPVLGICLGHQ-LLAKA   95 (198)
T ss_pred             CCCcccccccCCCEEEEcCCC-CCCccccccchhHHHHHHHhCCCCCCEEEEChhHH-HHHHH
Confidence            334445555567999999995 3322233  67888999998888899999999877 57764

>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=97.24  E-value=0.00074  Score=47.63  Aligned_cols=51  Identities=10%  Similarity=0.086  Sum_probs=36.0

Q ss_pred             CCccEEEEcCCccChhc--------------cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATN--------------LKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~--------------~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ..+|.||+|||......              ..++....++++++.+.+++|.+||.|.+ +|+.+
T Consensus        52 ~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~PilgiC~G~Q-~l~~~  116 (189)
T cd01745          52 ELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGKPILGICRGMQ-LLNVA  116 (189)
T ss_pred             hhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHCCCCEEEEcchHH-HHHHH
Confidence            47999999999421111              11123457888999889999999999876 46654

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.23  E-value=0.0005  Score=49.29  Aligned_cols=55  Identities=18%  Similarity=0.248  Sum_probs=35.3

Q ss_pred             cccCCCCCCccEEEEcCCccChhc----cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           18 LVSDCRDAVFDLIALPVCMPDATN----LKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        18 ~~~~~~~~~~D~liipGG~~~~~~----~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ..+++  +++|.|||||+ .....    +........+++...++++++.+||.|.+ +|+++
T Consensus        35 ~~~~l--~~~d~lIlpG~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q-~l~~~   93 (209)
T PRK13146         35 DPDAV--AAADRVVLPGV-GAFADCMRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQ-LLFER   93 (209)
T ss_pred             CHHHh--cCCCEEEECCC-CcHHHHHHHHHHCCcHHHHHHHHHhCCCcEEEECHHHH-HHhhc
Confidence            33444  48999999997 33221    11122233445555568999999999876 68887

>PRK00784 cobyric acid synthase; Provisional

Probab=97.23  E-value=0.0007  Score=54.47  Aligned_cols=65  Identities=17%  Similarity=0.184  Sum_probs=45.2

Q ss_pred             CCCEEeccccccCCCCCCccEEEEcCCccChhc--cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076            9 HGVKIVADALVSDCRDAVFDLIALPVCMPDATN--LKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus         9 ~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~--~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      .|..+..-...++++  ++|.|++|||.+....  +..+..+.+.|+++.+++++|.++|.|- .+|++.
T Consensus       275 ~g~~v~~~s~~~~l~--~~d~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~~g~pilg~C~G~-~~L~~~  341 (488)
T PRK00784        275 PGVDVRYVRPGEPLP--DADLVILPGSKNTIADLAWLRESGWDEAIRAHARRGGPVLGICGGY-QMLGRR  341 (488)
T ss_pred             CCCeEEEECCccccc--cCCEEEECCccchHHHHHHHHHcCHHHHHHHHHHcCCeEEEECHHH-HHHhhh
Confidence            455444433344444  7999999999632222  2345568899999999999999999975 467763

>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

Probab=97.22  E-value=0.00072  Score=47.09  Aligned_cols=49  Identities=8%  Similarity=-0.010  Sum_probs=31.9

Q ss_pred             CCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           23 RDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        23 ~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      +..+||.||+|||...... ...+.+.   +...+.++++.+||.|-+ +|+.+
T Consensus        38 ~~~~~dgvIl~Gg~~~~~~-~~~~~~~---~~~~~~~~PilGIC~G~Q-ll~~~   86 (181)
T cd01742          38 KLKNPKGIILSGGPSSVYE-EDAPRVD---PEIFELGVPVLGICYGMQ-LIAKA   86 (181)
T ss_pred             cccCCCEEEECCCcccccc-cccchhh---HHHHhcCCCEEEEcHHHH-HHHHh
Confidence            3458999999999432211 1122333   444456999999999877 57764

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

Probab=97.18  E-value=0.00057  Score=48.06  Aligned_cols=46  Identities=11%  Similarity=-0.067  Sum_probs=34.1

Q ss_pred             CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++|.||+|||....    .+....+++++..+++++|.+||-|-. +|+.+
T Consensus        41 ~~~glii~Gg~~~~----~~~~~~~~i~~~~~~~~PilGIC~G~Q-ll~~~   86 (188)
T TIGR00888        41 NPKGIILSGGPSSV----YAENAPRADEKIFELGVPVLGICYGMQ-LMAKQ   86 (188)
T ss_pred             CCCEEEECCCCCCc----CcCCchHHHHHHHhCCCCEEEECHHHH-HHHHh
Confidence            45699999994322    122346788888889999999999877 57665

separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.

>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

Probab=97.17  E-value=0.00055  Score=48.57  Aligned_cols=49  Identities=20%  Similarity=0.219  Sum_probs=33.8

Q ss_pred             CCccEEEEcCCccChhc----cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATN----LKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~----~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      +++|.||+||+. ...+    +.... ...+++++.+.+++|.++|.|.+ +|+.+
T Consensus        35 ~~~d~lii~G~~-~~~~~~~~l~~~~-~~~l~~~~~~~~~pvlGiC~G~Q-ll~~~   87 (196)
T TIGR01855        35 ELADKLILPGVG-AFGAAMARLRENG-LDLFVELVVRLGKPVLGICLGMQ-LLFER   87 (196)
T ss_pred             ccCCEEEECCCC-CHHHHHHHHHHcC-cHHHHHHHHhCCCCEEEECHHHH-Hhhhc
Confidence            479999999952 2221    11112 33444778888999999999866 68887

This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.

>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.16  E-value=0.0005  Score=48.78  Aligned_cols=46  Identities=20%  Similarity=0.235  Sum_probs=29.3

Q ss_pred             CccEEEEcCCccChhccc---cChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           26 VFDLIALPVCMPDATNLK---ESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        26 ~~D~liipGG~~~~~~~~---~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++|.||+||. +.+....   +...+.+.+++   .+++|.+||.|.+ +|+.+
T Consensus        38 ~~d~iIlPG~-G~~~~~~~~l~~~~l~~~i~~---~~~PilGIClG~Q-ll~~~   86 (196)
T PRK13170         38 AADKLFLPGV-GTAQAAMDQLRERELIDLIKA---CTQPVLGICLGMQ-LLGER   86 (196)
T ss_pred             CCCEEEECCC-CchHHHHHHHHHcChHHHHHH---cCCCEEEECHHHH-HHhhh
Confidence            7899999994 2222211   11234444443   4799999999877 57765

>PRK07765 para-aminobenzoate synthase component II; Provisional

Probab=97.16  E-value=0.0012  Score=47.59  Aligned_cols=48  Identities=23%  Similarity=0.245  Sum_probs=37.4

Q ss_pred             CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++||.|||.||..++.   +.....+|++++.+++++|.+||-|.. +|+.+
T Consensus        45 ~~~dgliisGGp~~~~---~~~~~~~~i~~~~~~~~PiLGIC~G~Q-lla~a   92 (214)
T PRK07765         45 AQFDGVLLSPGPGTPE---RAGASIDMVRACAAAGTPLLGVCLGHQ-AIGVA   92 (214)
T ss_pred             cCCCEEEECCCCCChh---hcchHHHHHHHHHhCCCCEEEEccCHH-HHHHH
Confidence            3799999999953332   334567899999999999999999877 56654

>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional

Probab=97.15  E-value=0.00056  Score=49.14  Aligned_cols=57  Identities=26%  Similarity=0.264  Sum_probs=39.6

Q ss_pred             CCccEEEEcCCccChhcc---ccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc---------cccCCce
Q 045076           25 AVFDLIALPVCMPDATNL---KESKVLETIVKKQASNGRLYAAVCASPAVALGSW---------GLLKGLK   83 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~---~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a---------gll~g~~   83 (145)
                      .++|.||+||+ +.+...   .....+.+.|+++.++++++.+||.|-. +|++.         |+++|+-
T Consensus        38 ~~~d~iIlPG~-g~~~~~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Q-ll~~~~~~~~~~glg~~~G~v  106 (210)
T CHL00188         38 AQVHALVLPGV-GSFDLAMKKLEKKGLITPIKKWIAEGNPFIGICLGLH-LLFETSEEGKEEGLGIYKGQV  106 (210)
T ss_pred             hhCCEEEECCC-CchHHHHHHHHHCCHHHHHHHHHHcCCCEEEECHHHH-HHhhccccCCcCCccceeEEE
Confidence            37999999995 232211   1223456778888888999999999877 57763         5677753

>PRK06490 glutamine amidotransferase; Provisional

Probab=97.12  E-value=0.0011  Score=48.48  Aligned_cols=51  Identities=6%  Similarity=-0.041  Sum_probs=38.5

Q ss_pred             CCccEEEEcCCccChhc-cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATN-LKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~-~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++||.+||.||..+..+ ......+.+||+++.++++++.+||-|.. +|+.+
T Consensus        51 ~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~Q-lla~a  102 (239)
T PRK06490         51 EDHAGAVIFGGPMSANDPDDFIRREIDWISVPLKENKPFLGICLGAQ-MLARH  102 (239)
T ss_pred             cccCEEEEECCCCCCCCCchHHHHHHHHHHHHHHCCCCEEEECHhHH-HHHHH
Confidence            47999999999533322 11124577999999999999999999877 68876

>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.10  E-value=0.00086  Score=48.18  Aligned_cols=49  Identities=20%  Similarity=0.208  Sum_probs=37.0

Q ss_pred             CCccEEEEcCCccCh----hccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDA----TNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~----~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      .++|.||+||+ ...    ..+ ....+.++|+++.++++++.+||.|.. +|++.
T Consensus        36 ~~~d~iIlPG~-g~~~~~~~~l-~~~gl~~~i~~~~~~~~pilGiC~G~Q-~l~~~   88 (210)
T PRK14004         36 ENSKALILPGD-GHFDKAMENL-NSTGLRSTIDKHVESGKPLFGICIGFQ-ILFES   88 (210)
T ss_pred             ccCCEEEECCC-CchHHHHHHH-HHcCcHHHHHHHHHcCCCEEEECHhHH-HHHHh
Confidence            38999999998 332    222 233588888998899999999999877 57664

>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.08  E-value=0.0012  Score=47.04  Aligned_cols=50  Identities=12%  Similarity=0.064  Sum_probs=33.0

Q ss_pred             CCccEEEEcCCccChhcccc---ChHHHHHHHHH-HHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATNLKE---SKVLETIVKKQ-ASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~~~---~~~l~~~l~~~-~~~~~~v~aic~g~~~~La~a   76 (145)
                      .++|.||+||+ ++......   .-.+...|+++ .+++++|.+||.|.+ +|+.+
T Consensus        36 ~~~d~lilPG~-g~~~~~~~~l~~~~~~~~l~~~~~~~~~pvlGiC~G~Q-~l~~~   89 (201)
T PRK13152         36 QKADKLLLPGV-GSFKEAMKNLKELGFIEALKEQVLVQKKPILGICLGMQ-LFLER   89 (201)
T ss_pred             cCCCEEEECCC-CchHHHHHHHHHcCcHHHHHHHHHhCCCcEEEECHhHH-HHhhc
Confidence            37999999998 44322111   11234445554 578999999999877 68765

>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II

Probab=97.07  E-value=0.00097  Score=58.70  Aligned_cols=57  Identities=16%  Similarity=0.185  Sum_probs=46.5

Q ss_pred             CCCccEEEEcCCccChhc----------cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCC
Q 045076           24 DAVFDLIALPVCMPDATN----------LKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKG   81 (145)
Q Consensus        24 ~~~~D~liipGG~~~~~~----------~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g   81 (145)
                      ..+||+|++|||+..-+.          +..++.+.+-+++|.++++++.+||+|-+ +|.+.|||.+
T Consensus      1029 l~~~~~l~~pGGFSyGD~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ-~L~~lGLlP~ 1095 (1239)
T TIGR01857      1029 IDKSQILMLPGGFSAGDEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQ-ALVKSGLLPY 1095 (1239)
T ss_pred             cccCcEEEEcCccCcccccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHH-HHHHcCCCcC
Confidence            358999999999742222          34567889999999999999999999877 7999999975

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=96.95  E-value=0.0018  Score=50.96  Aligned_cols=66  Identities=23%  Similarity=0.288  Sum_probs=49.6

Q ss_pred             CCEEeccccccC-CCCCCccEEEEcCCccC--hhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           10 GVKIVADALVSD-CRDAVFDLIALPVCMPD--ATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        10 G~~i~~d~~~~~-~~~~~~D~liipGG~~~--~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      |-.+.+=..+.| ..+++.|+|.||||++.  ...|.+++.+++.|++++..|++|-+=|.| -+.|.+.
T Consensus       271 GAelv~FSPL~D~~lP~~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~G~piyaECGG-lMYL~~~  339 (451)
T COG1797         271 GAELVFFSPLADEELPPDVDAVYLGGGYPELFAEELSANESMRRAIKAFAAAGKPIYAECGG-LMYLGES  339 (451)
T ss_pred             CCEEEEeCCcCCCCCCCCCCEEEeCCCChHHHHHHHhhCHHHHHHHHHHHHcCCceEEeccc-ceeehhh
Confidence            444444334444 23346999999999864  345778999999999999999999999996 5677764

>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP)

Probab=96.92  E-value=0.0008  Score=43.68  Aligned_cols=46  Identities=24%  Similarity=0.330  Sum_probs=33.0

Q ss_pred             CCccEEEEcCCccC--hhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhh
Q 045076           25 AVFDLIALPVCMPD--ATNLKESKVLETIVKKQASNGRLYAAVCASPAVALG   74 (145)
Q Consensus        25 ~~~D~liipGG~~~--~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La   74 (145)
                      .++|.||+|||...  +..+. ... .+.|+++.++++++.+||.| + .++
T Consensus        43 ~~ad~lVlPGGa~~~~~~~L~-~~g-~~~i~~~v~~g~p~LGIClG-A-y~a   90 (114)
T cd03144          43 SKTALLVVPGGADLPYCRALN-GKG-NRRIRNFVRNGGNYLGICAG-A-YLA   90 (114)
T ss_pred             hCCCEEEECCCChHHHHHHHH-hhC-cHHHHHHHHCCCcEEEEecC-c-cce
Confidence            37999999998422  22232 223 77888888999999999997 4 355

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=96.88  E-value=0.0017  Score=52.07  Aligned_cols=49  Identities=14%  Similarity=0.234  Sum_probs=37.7

Q ss_pred             CccEEEEcCCccChhc--cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhh
Q 045076           26 VFDLIALPVCMPDATN--LKESKVLETIVKKQASNGRLYAAVCASPAVALGS   75 (145)
Q Consensus        26 ~~D~liipGG~~~~~~--~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~   75 (145)
                      ++|+|++|||......  +..+..+.+.|+++.++|.+|.++|.|- .+|.+
T Consensus       284 ~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG~-q~Lg~  334 (475)
T TIGR00313       284 GCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGICGGY-QMLGK  334 (475)
T ss_pred             cCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEcHHH-HHhhh
Confidence            7899999999632222  2245567888999999999999999975 46877

>PRK07567 glutamine amidotransferase; Provisional

Probab=96.84  E-value=0.002  Score=47.29  Aligned_cols=52  Identities=8%  Similarity=0.109  Sum_probs=34.3

Q ss_pred             CCCccEEEEcCCccChhcc--ccCh---HH----HHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           24 DAVFDLIALPVCMPDATNL--KESK---VL----ETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        24 ~~~~D~liipGG~~~~~~~--~~~~---~l----~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      +++||.+||.||..+...-  ...+   .+    .++++....++++|.+||-|.. +|+.+
T Consensus        49 ~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Q-lla~a  109 (242)
T PRK07567         49 LDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVG-TLGHH  109 (242)
T ss_pred             HhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHH-HHHHH
Confidence            4589999999995333221  0122   22    3445555588999999999877 67765

>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]

Probab=96.82  E-value=0.0012  Score=45.50  Aligned_cols=58  Identities=17%  Similarity=0.101  Sum_probs=39.2

Q ss_pred             ccccccCCCCCCccEEEEcCCccC-hhccccChHHHHHHHHHHHCC-CeEEEEcchhHHHhhh
Q 045076           15 ADALVSDCRDAVFDLIALPVCMPD-ATNLKESKVLETIVKKQASNG-RLYAAVCASPAVALGS   75 (145)
Q Consensus        15 ~d~~~~~~~~~~~D~liipGG~~~-~~~~~~~~~l~~~l~~~~~~~-~~v~aic~g~~~~La~   75 (145)
                      +-.+-.|+  .+.|+||||||... +..+.+-..+.+-|-++..++ +++.+.|+|.. +|.+
T Consensus        47 tVKT~~D~--aq~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI-~LS~  106 (226)
T KOG3210|consen   47 TVKTKNDL--AQCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMI-YLSQ  106 (226)
T ss_pred             eecCHHHH--hhCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCccceeechhhh-hhhh
Confidence            33344444  48999999999532 222334445888888888877 99999999743 4554

>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]

Probab=96.80  E-value=0.0026  Score=45.12  Aligned_cols=69  Identities=20%  Similarity=0.352  Sum_probs=46.7

Q ss_pred             CCEEeccccccCCCCCCccEEEEcCCccC----hhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhh---------c
Q 045076           10 GVKIVADALVSDCRDAVFDLIALPVCMPD----ATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGS---------W   76 (145)
Q Consensus        10 G~~i~~d~~~~~~~~~~~D~liipGG~~~----~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~---------a   76 (145)
                      |..+......+++.  ..|.||+||= +.    +..+ +...+.+.|++....++++.+||-|.++++..         .
T Consensus        25 G~~~~vs~d~~~i~--~AD~liLPGV-Gaf~~am~~L-~~~gl~~~i~~~~~~~kP~LGIClGMQlLfe~SeE~~~~~GL  100 (204)
T COG0118          25 GAEVVVSRDPEEIL--KADKLILPGV-GAFGAAMANL-RERGLIEAIKEAVESGKPFLGICLGMQLLFERSEEGGGVKGL  100 (204)
T ss_pred             CCeeEEecCHHHHh--hCCEEEecCC-CCHHHHHHHH-HhcchHHHHHHHHhcCCCEEEEeHhHHhhhhcccccCCCCCc
Confidence            33444333444444  7999999994 22    2333 33478999999999999999999998864443         2


Q ss_pred             cccCCc
Q 045076           77 GLLKGL   82 (145)
Q Consensus        77 gll~g~   82 (145)
                      |+++|+
T Consensus       101 g~i~G~  106 (204)
T COG0118         101 GLIPGK  106 (204)
T ss_pred             ceecce
Confidence            666665

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=96.79  E-value=0.0028  Score=50.32  Aligned_cols=49  Identities=24%  Similarity=0.306  Sum_probs=36.8

Q ss_pred             CccEEEEcCCccCh--hccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           26 VFDLIALPVCMPDA--TNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        26 ~~D~liipGG~~~~--~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++|+|++|||.+..  ..+..+... +-|+++.++|.+|.++|.|- .+|++.
T Consensus       274 ~~D~l~lpGG~~e~~~~~L~~n~~~-~~i~~~~~~G~pi~aeCGG~-q~L~~~  324 (433)
T PRK13896        274 DCDGVYLPGGYPELHADALADSPAL-DELADRAADGLPVLGECGGL-MALAES  324 (433)
T ss_pred             CCCEEEeCCCchhhHHHHHHhCCcH-HHHHHHHHCCCcEEEEehHH-HHhhcc
Confidence            78999999997432  223344445 78899999999999999964 467763

>PRK06895 putative anthranilate synthase component II; Provisional

Probab=96.76  E-value=0.0031  Score=44.44  Aligned_cols=47  Identities=13%  Similarity=0.143  Sum_probs=35.4

Q ss_pred             CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++||.|||.||...+.   ..+.+.++|++ .++++++.+||-|.+ +|+.+
T Consensus        42 ~~~d~iIi~gGp~~~~---~~~~~~~~i~~-~~~~~PiLGIClG~Q-lla~~   88 (190)
T PRK06895         42 ENFSHILISPGPDVPR---AYPQLFAMLER-YHQHKSILGVCLGHQ-TLCEF   88 (190)
T ss_pred             ccCCEEEECCCCCChH---HhhHHHHHHHH-hcCCCCEEEEcHHHH-HHHHH
Confidence            3799999998853222   24567888886 677899999999887 57765

>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed

Probab=96.62  E-value=0.0031  Score=48.75  Aligned_cols=47  Identities=19%  Similarity=0.058  Sum_probs=35.4

Q ss_pred             CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      .++|.||++||..++.   +.....++++++.++ +++.+||-|-+ +|+.+
T Consensus       207 ~~~DGIiLsgGPgdp~---~~~~~~~~i~~~~~~-~PvlGIClG~Q-lLa~a  253 (354)
T PRK12838        207 LNPDGIVLSNGPGDPK---ELQPYLPEIKKLISS-YPILGICLGHQ-LIALA  253 (354)
T ss_pred             cCCCEEEEcCCCCChH---HhHHHHHHHHHHhcC-CCEEEECHHHH-HHHHH
Confidence            4799999999953433   344667788888776 99999999877 56654

>PRK00758 GMP synthase subunit A; Validated

Probab=96.62  E-value=0.0027  Score=44.49  Aligned_cols=43  Identities=14%  Similarity=0.103  Sum_probs=31.1

Q ss_pred             Cc-cEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           26 VF-DLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        26 ~~-D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++ |.||++||. ...   ....+.+|++   +.+++|.+||-|-+ +|+.+
T Consensus        40 ~~~dgivi~Gg~-~~~---~~~~~~~~l~---~~~~PilGIC~G~Q-~L~~a   83 (184)
T PRK00758         40 AFEDGLILSGGP-DIE---RAGNCPEYLK---ELDVPILGICLGHQ-LIAKA   83 (184)
T ss_pred             hcCCEEEECCCC-Chh---hccccHHHHH---hCCCCEEEEeHHHH-HHHHh
Confidence            67 999999994 332   2334566775   35799999999877 67765

>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

Probab=96.53  E-value=0.0036  Score=44.13  Aligned_cols=53  Identities=11%  Similarity=0.109  Sum_probs=36.9

Q ss_pred             ccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           19 VSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        19 ~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++++...++|.|||.||..++.+   .....++++++ .++++|.+||-|-+ +|+.+
T Consensus        36 ~~~~~~~~~d~iilsgGpg~p~~---~~~~~~~i~~~-~~~~PvLGIC~G~Q-ll~~~   88 (188)
T TIGR00566        36 LQEIEALLPLLIVISPGPCTPNE---AGISLEAIRHF-AGKLPILGVCLGHQ-AMGQA   88 (188)
T ss_pred             HHHHHhcCCCEEEEcCCCCChhh---cchhHHHHHHh-ccCCCEEEECHHHH-HHHHH
Confidence            44444346899999999544432   23347788877 67899999999877 57654

This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.

>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase

Probab=96.52  E-value=0.0069  Score=44.26  Aligned_cols=43  Identities=14%  Similarity=0.092  Sum_probs=34.3

Q ss_pred             CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHH
Q 045076           25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAV   71 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~   71 (145)
                      .++|.|+++||. +..   ..+....+++...++++++.+||.|.+.
T Consensus        54 ~~~dgivl~GG~-~~~---~~~~~~~~i~~~~~~~~PvlGIClG~Q~   96 (235)
T cd01746          54 KGADGILVPGGF-GIR---GVEGKILAIKYARENNIPFLGICLGMQL   96 (235)
T ss_pred             ccCCEEEECCCC-CCc---chhhHHHHHHHHHHCCceEEEEEhHHHH
Confidence            579999999994 332   2346677888888999999999998764

Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th

>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit

Probab=96.52  E-value=0.0037  Score=48.43  Aligned_cols=46  Identities=15%  Similarity=0.001  Sum_probs=35.0

Q ss_pred             CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      .+|.|||+||...+.   ..+..+++++++.+ +++|.+||-|-+ +|+.+
T Consensus       214 ~pDGIiLSgGPgdp~---~~~~~i~~i~~~~~-~~PILGIClG~Q-lLa~a  259 (358)
T TIGR01368       214 NPDGIFLSNGPGDPA---AVEPAIETIRKLLE-KIPIFGICLGHQ-LLALA  259 (358)
T ss_pred             CCCEEEECCCCCCHH---HHHHHHHHHHHHHc-CCCEEEECHHHH-HHHHH
Confidence            469999999953433   34567788888876 899999999877 56654

This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.

>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional

Probab=96.49  E-value=0.0052  Score=54.61  Aligned_cols=58  Identities=14%  Similarity=0.090  Sum_probs=46.7

Q ss_pred             CCCccEEEEcCCccCh----------hccccChHHHHHHHHHH-HCCCeEEEEcchhHHHhhhccccCCc
Q 045076           24 DAVFDLIALPVCMPDA----------TNLKESKVLETIVKKQA-SNGRLYAAVCASPAVALGSWGLLKGL   82 (145)
Q Consensus        24 ~~~~D~liipGG~~~~----------~~~~~~~~l~~~l~~~~-~~~~~v~aic~g~~~~La~agll~g~   82 (145)
                      ..+|+.|++|||+..-          ..+..++.+.+-+++|. +.++++.+||+|-+ +|.+.|||.|.
T Consensus      1080 L~~~~glv~pGGFSyGD~l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQ-iL~~lgllPg~ 1148 (1307)
T PLN03206       1080 LDDFRGIVFVGGFSYADVLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQ-LMALLGWVPGP 1148 (1307)
T ss_pred             ccceeEEEEcCcCCCccccchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHH-HHHHcCCCCCC
Confidence            4689999999996311          13456788999999998 55999999999877 79999999875

>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form

Probab=96.48  E-value=0.0074  Score=53.83  Aligned_cols=59  Identities=12%  Similarity=0.023  Sum_probs=46.6

Q ss_pred             CCCCccEEEEcCCccCh----------hccccChHHHHHHHHHH-HCCCeEEEEcchhHHHhh-hccccCCc
Q 045076           23 RDAVFDLIALPVCMPDA----------TNLKESKVLETIVKKQA-SNGRLYAAVCASPAVALG-SWGLLKGL   82 (145)
Q Consensus        23 ~~~~~D~liipGG~~~~----------~~~~~~~~l~~~l~~~~-~~~~~v~aic~g~~~~La-~agll~g~   82 (145)
                      ..++|+.|++|||+..-          ..+..++.+.+.+++|. ++++++.+||+|-+ +|. ..||+.|.
T Consensus      1097 ~l~~~~~lv~~GGFSygD~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ-~L~~~~gllp~~ 1167 (1310)
T TIGR01735      1097 HLDEFRGLAACGGFSYGDVLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQ-MLSNLLEWIPGT 1167 (1310)
T ss_pred             chhheeEEEEcCCCCCccchhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHH-HHHHHhCcCCCC
Confidence            35689999999996311          11446788899999998 88999999999877 577 89999864

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.

>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=96.45  E-value=0.0029  Score=44.87  Aligned_cols=47  Identities=15%  Similarity=0.209  Sum_probs=32.1

Q ss_pred             CccEEEEcCCccChhc-c--ccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           26 VFDLIALPVCMPDATN-L--KESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        26 ~~D~liipGG~~~~~~-~--~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++|.||+||+ ..... +  .+...+.+.|++  ..++++.+||.|-+ +|++.
T Consensus        37 ~~D~lIlPG~-g~~~~~~~~L~~~gl~~~i~~--~~g~PvlGIClGmQ-lL~~~   86 (192)
T PRK13142         37 QAETIILPGV-GHFKDAMSEIKRLNLNAILAK--NTDKKMIGICLGMQ-LMYEH   86 (192)
T ss_pred             cCCEEEECCC-CCHHHHHHHHHHCCcHHHHHH--hCCCeEEEECHHHH-HHhhh
Confidence            7999999998 33221 1  122236677776  56899999999877 56653

>PRK08007 para-aminobenzoate synthase component II; Provisional

Probab=96.44  E-value=0.0044  Score=43.62  Aligned_cols=52  Identities=10%  Similarity=0.070  Sum_probs=36.0

Q ss_pred             cCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           20 SDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        20 ~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      +++...+||.||+.||..++.+   .....++++. ...+++|.+||-|-+ +|+.+
T Consensus        37 ~~~~~~~~d~iils~GPg~p~~---~~~~~~~~~~-~~~~~PiLGIClG~Q-~la~a   88 (187)
T PRK08007         37 ADIDALKPQKIVISPGPCTPDE---AGISLDVIRH-YAGRLPILGVCLGHQ-AMAQA   88 (187)
T ss_pred             HHHHhcCCCEEEEcCCCCChHH---CCccHHHHHH-hcCCCCEEEECHHHH-HHHHH
Confidence            3333346899999999545543   3445666666 457899999999876 57765

>PRK05637 anthranilate synthase component II; Provisional

Probab=96.26  E-value=0.0074  Score=43.30  Aligned_cols=53  Identities=17%  Similarity=0.152  Sum_probs=35.2

Q ss_pred             ccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           19 VSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        19 ~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++++....||.|||.||..++.+   .....++++++. .+++|.+||-|.+ +|+.+
T Consensus        37 ~~~l~~~~~~~iIlsgGPg~~~d---~~~~~~li~~~~-~~~PiLGIClG~Q-lla~a   89 (208)
T PRK05637         37 VEEILAANPDLICLSPGPGHPRD---AGNMMALIDRTL-GQIPLLGICLGFQ-ALLEH   89 (208)
T ss_pred             HHHHHhcCCCEEEEeCCCCCHHH---hhHHHHHHHHHh-CCCCEEEEcHHHH-HHHHH
Confidence            34443347899999888544432   223456665543 5799999999877 57765

>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional

Probab=96.20  E-value=0.0092  Score=46.63  Aligned_cols=53  Identities=19%  Similarity=0.004  Sum_probs=37.3

Q ss_pred             cCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           20 SDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        20 ~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      +++...++|.||++||.+.+.   .....++.++++.+.+.+|.+||-|-. +|+.+
T Consensus       227 ~~i~~~~~dgIilSgGPg~p~---~~~~~i~~i~~~~~~~~PilGIClGhQ-lLa~a  279 (382)
T CHL00197        227 QDILSYQPDGILLSNGPGDPS---AIHYGIKTVKKLLKYNIPIFGICMGHQ-ILSLA  279 (382)
T ss_pred             HHHhccCCCEEEEcCCCCChh---HHHHHHHHHHHHHhCCCCEEEEcHHHH-HHHHH
Confidence            333334789999999954443   234566777777777899999999877 56654

>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional

Probab=96.19  E-value=0.01  Score=43.84  Aligned_cols=51  Identities=14%  Similarity=0.096  Sum_probs=36.6

Q ss_pred             CCccEEEEcCCccChh-------------ccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDAT-------------NLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~-------------~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      +.+|.|+++||..+..             .-.++...+++++.+.+++++|.+||-|-+ +|+.+
T Consensus        60 ~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Q-llnva  123 (254)
T PRK11366         60 PKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQ-ELVVA  123 (254)
T ss_pred             HhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHH-HHHHH
Confidence            3599999999832221             011234567899999999999999999877 46654

>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional

Probab=96.17  E-value=0.015  Score=52.02  Aligned_cols=57  Identities=9%  Similarity=0.041  Sum_probs=44.6

Q ss_pred             CCCccEEEEcCCccCh----------hccccChHHHHHHHHHH-HCCCeEEEEcchhHHHhhhcc-ccCC
Q 045076           24 DAVFDLIALPVCMPDA----------TNLKESKVLETIVKKQA-SNGRLYAAVCASPAVALGSWG-LLKG   81 (145)
Q Consensus        24 ~~~~D~liipGG~~~~----------~~~~~~~~l~~~l~~~~-~~~~~v~aic~g~~~~La~ag-ll~g   81 (145)
                      ..+|++|++|||+..-          ..+..|+.+.+-+++|. ++++++.+||+|-+ +|.+.| ++.+
T Consensus      1078 l~~~~~l~~~GGFS~gD~lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ-~L~~lg~l~p~ 1146 (1290)
T PRK05297       1078 LEDFKGLVACGGFSYGDVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQ-MMSNLKEIIPG 1146 (1290)
T ss_pred             hhhCcEEEECCccCCcccchHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHH-HHHHhCCccCC
Confidence            4689999999996321          12345788899999976 78899999999877 799997 6655

>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E

Probab=96.16  E-value=0.0056  Score=43.96  Aligned_cols=48  Identities=21%  Similarity=0.131  Sum_probs=36.0

Q ss_pred             CCccEEEEcCCccChhcc---ccChHHHHHHHHHHHCCCeEEEEcchhHHHhhh
Q 045076           25 AVFDLIALPVCMPDATNL---KESKVLETIVKKQASNGRLYAAVCASPAVALGS   75 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~---~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~   75 (145)
                      .+.|+|++|||.  ...+   .+.-.+.+.|++..+++++++++|.|. .++..
T Consensus        79 ~~ad~I~l~GG~--~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa-~i~~~  129 (212)
T cd03146          79 LEADVIYVGGGN--TFNLLAQWREHGLDAILKAALERGVVYIGWSAGS-NCWFP  129 (212)
T ss_pred             hcCCEEEECCch--HHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhH-HhhCC
Confidence            479999999984  3222   223367788888888999999999974 46776

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.

>PRK06774 para-aminobenzoate synthase component II; Provisional

Probab=96.14  E-value=0.0093  Score=42.02  Aligned_cols=53  Identities=11%  Similarity=0.160  Sum_probs=36.4

Q ss_pred             ccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           19 VSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        19 ~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++++...++|.||+.||..++.+   ......+++. .+++++|.+||-|-+ +|+.+
T Consensus        36 ~~~~~~~~~~~iilsgGP~~~~~---~~~~~~~i~~-~~~~~PiLGIC~G~Q-lla~~   88 (191)
T PRK06774         36 LTDIEQLAPSHLVISPGPCTPNE---AGISLAVIRH-FADKLPILGVCLGHQ-ALGQA   88 (191)
T ss_pred             HHHHHhcCCCeEEEcCCCCChHh---CCCchHHHHH-hcCCCCEEEECHHHH-HHHHH
Confidence            44444346899999999544433   3335566655 467899999999877 57765

>PRK05670 anthranilate synthase component II; Provisional

Probab=96.14  E-value=0.011  Score=41.50  Aligned_cols=46  Identities=15%  Similarity=0.156  Sum_probs=33.3

Q ss_pred             CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++|.|||.||..++.+   .....++++++ .++++|.+||-|-+ +|+.+
T Consensus        43 ~~dglIlsgGpg~~~d---~~~~~~~l~~~-~~~~PvLGIClG~Q-lla~a   88 (189)
T PRK05670         43 NPDAIVLSPGPGTPAE---AGISLELIREF-AGKVPILGVCLGHQ-AIGEA   88 (189)
T ss_pred             CCCEEEEcCCCCChHH---cchHHHHHHHh-cCCCCEEEECHHHH-HHHHH
Confidence            5899999888544432   23466777764 56799999999877 57764

>CHL00101 trpG anthranilate synthase component 2

Probab=96.09  E-value=0.0085  Score=42.25  Aligned_cols=47  Identities=13%  Similarity=0.044  Sum_probs=32.2

Q ss_pred             CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      .++|.|||.||..++.+   .. +...+.+...+++++.+||-|-+ +|+.+
T Consensus        42 ~~~dgiiisgGpg~~~~---~~-~~~~i~~~~~~~~PiLGIClG~Q-lla~~   88 (190)
T CHL00101         42 LNIRHIIISPGPGHPRD---SG-ISLDVISSYAPYIPILGVCLGHQ-SIGYL   88 (190)
T ss_pred             CCCCEEEECCCCCChHH---Cc-chHHHHHHhcCCCcEEEEchhHH-HHHHH
Confidence            46999999999544432   22 23333345668899999999877 57764

>PRK06186 hypothetical protein; Validated

Probab=96.06  E-value=0.012  Score=42.84  Aligned_cols=43  Identities=19%  Similarity=0.086  Sum_probs=35.5

Q ss_pred             CCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhH
Q 045076           24 DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPA   70 (145)
Q Consensus        24 ~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~   70 (145)
                      ..++|.|+||||. +.   +.-+--+..++.+.++++++.+||-|.+
T Consensus        51 l~~~dgilvpgGf-g~---rg~~Gki~ai~~Are~~iP~LGIClGmQ   93 (229)
T PRK06186         51 LAGFDGIWCVPGS-PY---RNDDGALTAIRFARENGIPFLGTCGGFQ   93 (229)
T ss_pred             HhhCCeeEeCCCC-Cc---ccHhHHHHHHHHHHHcCCCeEeechhhH
Confidence            3478999999996 32   3456777889999999999999999866

>PLN02347 GMP synthetase

Probab=96.04  E-value=0.013  Score=47.76  Aligned_cols=58  Identities=7%  Similarity=-0.002  Sum_probs=35.3

Q ss_pred             ccccCCCCCCccEEEEcCCccChhccccChHHH-HHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           17 ALVSDCRDAVFDLIALPVCMPDATNLKESKVLE-TIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        17 ~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~-~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ...+++...++|.||++||..+.. ....+.+. .+++...+.+.+|.+||-|-+ +|+.+
T Consensus        44 ~~~~~i~~~~~dgIILsGGP~sv~-~~~~p~~~~~i~~~~~~~~iPILGIClG~Q-lLa~a  102 (536)
T PLN02347         44 ASLDRIASLNPRVVILSGGPHSVH-VEGAPTVPEGFFDYCRERGVPVLGICYGMQ-LIVQK  102 (536)
T ss_pred             CCHHHHhcCCCCEEEECCCCCccc-ccCCchhhHHHHHHHHhcCCcEEEECHHHH-HHHHH
Confidence            344444333689999999943322 22223222 334444457899999999877 57765

>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown

Probab=95.96  E-value=0.017  Score=44.86  Aligned_cols=48  Identities=19%  Similarity=0.261  Sum_probs=35.9

Q ss_pred             CCccEEEEcCCccChhccc-cChHHHHHHHHHHHCCCeEEEEcchhHHHhhh
Q 045076           25 AVFDLIALPVCMPDATNLK-ESKVLETIVKKQASNGRLYAAVCASPAVALGS   75 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~~-~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~   75 (145)
                      .+++++|+|||. ...... -+..-.+.||+|.++|.-..+||+|+-  ++.
T Consensus        48 ~~~~LlV~PGG~-d~~y~~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY--~as   96 (367)
T PF09825_consen   48 SKCALLVMPGGA-DLPYCRSLNGEGNRRIRQFVENGGGYLGICAGAY--YAS   96 (367)
T ss_pred             cCCcEEEECCCc-chHHHHhhChHHHHHHHHHHHcCCcEEEECcchh--hhc
Confidence            479999999994 333222 256668889999999999999999743  554

It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.

>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated

Probab=95.95  E-value=0.013  Score=41.62  Aligned_cols=47  Identities=6%  Similarity=0.072  Sum_probs=33.3

Q ss_pred             CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      .+||.||+.||..++.+   .......++.+ ..++++.+||-|.+ +|+.+
T Consensus        42 ~~~d~iIlsgGP~~p~~---~~~~~~~i~~~-~~~~PvLGIClG~Q-lla~~   88 (195)
T PRK07649         42 MKPDFLMISPGPCSPNE---AGISMEVIRYF-AGKIPIFGVCLGHQ-SIAQV   88 (195)
T ss_pred             CCCCEEEECCCCCChHh---CCCchHHHHHh-cCCCCEEEEcHHHH-HHHHH
Confidence            46999999999545443   23355566654 47899999999877 57765

>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

Probab=95.91  E-value=0.019  Score=40.07  Aligned_cols=47  Identities=11%  Similarity=0.075  Sum_probs=31.9

Q ss_pred             CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      .+||.+|+.||..++.   ++. ....+++...+++++.+||-|-. +|+.+
T Consensus        41 ~~~dgvil~gG~~~~~---~~~-~~~~i~~~~~~~~PvlGIC~G~Q-lla~~   87 (184)
T cd01743          41 LNPDAIVISPGPGHPE---DAG-ISLEIIRALAGKVPILGVCLGHQ-AIAEA   87 (184)
T ss_pred             cCCCEEEECCCCCCcc---cch-hHHHHHHHHhcCCCEEEECHhHH-HHHHH
Confidence            5799999988743321   222 34445555667899999999876 57765

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese

>PHA03366 FGAM-synthase; Provisional

Probab=95.85  E-value=0.019  Score=51.35  Aligned_cols=56  Identities=5%  Similarity=-0.072  Sum_probs=45.9

Q ss_pred             CCCccEEEEcCCccCh----------hccccChHHHHHHHHHH-HCCCeEEEEcc-hhHHHhhhccccC
Q 045076           24 DAVFDLIALPVCMPDA----------TNLKESKVLETIVKKQA-SNGRLYAAVCA-SPAVALGSWGLLK   80 (145)
Q Consensus        24 ~~~~D~liipGG~~~~----------~~~~~~~~l~~~l~~~~-~~~~~v~aic~-g~~~~La~agll~   80 (145)
                      .++|+.|++|||+...          ..+..|+.+.+.+++|. ++++.+.+||+ |-+ +|.+.|++.
T Consensus      1070 l~~f~glv~~GGFS~gD~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q-~L~~lgll~ 1137 (1304)
T PHA03366       1070 LDEFSGLVIGGSSGAEDSYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQ-ILFALKAVG 1137 (1304)
T ss_pred             cccceEEEEcCCCCCcccccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHH-HHHHcCCcc
Confidence            5689999999997421          22447889999999998 56999999999 987 799999994

>PRK05282 (alpha)-aspartyl dipeptidase; Validated

Probab=95.85  E-value=0.013  Score=42.77  Aligned_cols=48  Identities=19%  Similarity=0.122  Sum_probs=36.5

Q ss_pred             CCccEEEEcCCccChhcc---ccChHHHHHHHHHHHCCCeEEEEcchhHHHhhh
Q 045076           25 AVFDLIALPVCMPDATNL---KESKVLETIVKKQASNGRLYAAVCASPAVALGS   75 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~---~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~   75 (145)
                      .+.|+|+|+||.  ...+   .+.-.+.+.|+++.++|+++++.|+| +.+++.
T Consensus        78 ~~ad~I~v~GGn--t~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAG-Aii~~~  128 (233)
T PRK05282         78 ENAEAIFVGGGN--TFQLLKQLYERGLLAPIREAVKNGTPYIGWSAG-ANVAGP  128 (233)
T ss_pred             hcCCEEEECCcc--HHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHH-HHhhhc
Confidence            478999999994  3332   34456788889999999999999996 545555

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=95.76  E-value=0.016  Score=46.62  Aligned_cols=47  Identities=11%  Similarity=0.051  Sum_probs=31.5

Q ss_pred             CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      .++|.||+|||. ....-.-...+.+.|+++   +++|.+||.|-+ +|++.
T Consensus        35 ~~~D~lILPGG~-~~~~~~l~~~l~~~i~~~---g~pvlGICgG~Q-mLg~~   81 (476)
T PRK06278         35 KDLDGLIIPGGS-LVESGSLTDELKKEILNF---DGYIIGICSGFQ-ILSEK   81 (476)
T ss_pred             ccCCEEEECCCc-hhhcchHHHHHHHHHHHc---CCeEEEEcHHHH-hcccc
Confidence            379999999983 111100024555666555   899999999877 57765

>PRK08857 para-aminobenzoate synthase component II; Provisional

Probab=95.60  E-value=0.022  Score=40.20  Aligned_cols=46  Identities=7%  Similarity=0.011  Sum_probs=33.2

Q ss_pred             CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++|.+++-||..++.+   +....++++. .+++.+|.+||-|.. +|+.+
T Consensus        43 ~~~~iilsgGp~~~~~---~~~~~~~i~~-~~~~~PiLGIClG~Q-lia~a   88 (193)
T PRK08857         43 NPTHLVISPGPCTPNE---AGISLQAIEH-FAGKLPILGVCLGHQ-AIAQV   88 (193)
T ss_pred             CCCEEEEeCCCCChHH---CcchHHHHHH-hcCCCCEEEEcHHHH-HHHHH
Confidence            5899999998544432   3344667766 467899999999877 57764

>PRK13566 anthranilate synthase; Provisional

Probab=95.56  E-value=0.03  Score=47.30  Aligned_cols=47  Identities=13%  Similarity=0.036  Sum_probs=36.4

Q ss_pred             CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      .++|.|||.||...+.    +..+.+++++..+++++|.+||-|-. +|+.+
T Consensus       568 ~~~DgVVLsgGpgsp~----d~~~~~lI~~a~~~~iPILGIClG~Q-lLa~a  614 (720)
T PRK13566        568 VNPDLVVLSPGPGRPS----DFDCKATIDAALARNLPIFGVCLGLQ-AIVEA  614 (720)
T ss_pred             cCCCEEEECCCCCChh----hCCcHHHHHHHHHCCCcEEEEehhHH-HHHHH
Confidence            4789999977743332    33478999999999999999999877 57664

>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase

Probab=95.50  E-value=0.042  Score=48.89  Aligned_cols=56  Identities=5%  Similarity=-0.072  Sum_probs=45.3

Q ss_pred             CCCccEEEEcCCccCh----------hccccChHHHHHHHHHH-HCCCeEEEEcc-hhHHHhhhccccC
Q 045076           24 DAVFDLIALPVCMPDA----------TNLKESKVLETIVKKQA-SNGRLYAAVCA-SPAVALGSWGLLK   80 (145)
Q Consensus        24 ~~~~D~liipGG~~~~----------~~~~~~~~l~~~l~~~~-~~~~~v~aic~-g~~~~La~agll~   80 (145)
                      .++|+.|++|||....          ..+..++.+.+.+++|. +.++.+.+||+ |-+ +|.+.|++.
T Consensus       971 l~~f~glv~~Ggfsy~D~lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q-~L~~lg~l~ 1038 (1202)
T TIGR01739       971 LDTFSGLIIGGASGTLDSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQ-LLLALNIVG 1038 (1202)
T ss_pred             hhheEEEEEcCcCCCCccchHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHH-HHHHcCCCc
Confidence            3589999999996422          22446889999999998 55999999999 988 799999984

This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.

>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)

Probab=95.49  E-value=0.026  Score=44.57  Aligned_cols=53  Identities=15%  Similarity=0.066  Sum_probs=37.0

Q ss_pred             ccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           19 VSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        19 ~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      .+++...++|.||+.||...+.   ..+...+.++++. .+.+|.+||-|-+ +|+.+
T Consensus       274 ~~ei~~~~pDGIiLSnGPGDP~---~~~~~ie~ik~l~-~~iPIlGICLGhQ-lLa~A  326 (415)
T PLN02771        274 ASEALKMKPDGVLFSNGPGDPS---AVPYAVETVKELL-GKVPVFGICMGHQ-LLGQA  326 (415)
T ss_pred             HHHHhhcCCCEEEEcCCCCChh---HhhHHHHHHHHHH-hCCCEEEEcHHHH-HHHHh
Confidence            3344334799999999954443   3355667777765 4789999999877 57765

>PRK05380 pyrG CTP synthetase; Validated

Probab=95.47  E-value=0.032  Score=45.33  Aligned_cols=43  Identities=12%  Similarity=0.107  Sum_probs=34.1

Q ss_pred             CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHH
Q 045076           25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAV   71 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~   71 (145)
                      ..+|.|++|||+ +..   ..+..+.+++.+.++++++.+||-|-++
T Consensus       342 ~~~DGIIlpGGf-G~~---~~~g~i~~i~~a~e~~iPiLGIClGmQl  384 (533)
T PRK05380        342 KGVDGILVPGGF-GER---GIEGKILAIRYARENNIPFLGICLGMQL  384 (533)
T ss_pred             hcCCEEEecCCC-Ccc---ccccHHHHHHHHHHCCCcEEEEchHHHH
Confidence            479999999996 332   2345678888888999999999998763

>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade

Probab=95.12  E-value=0.044  Score=46.25  Aligned_cols=47  Identities=13%  Similarity=0.057  Sum_probs=36.0

Q ss_pred             CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      .+||.|||.||..++.    +....+++++..+.+++|.+||-|.+ +|+.+
T Consensus       558 ~~~DgLILsgGPGsp~----d~~~~~~I~~~~~~~iPvLGICLG~Q-lLa~a  604 (717)
T TIGR01815       558 RRPDLVVLSPGPGRPA----DFDVAGTIDAALARGLPVFGVCLGLQ-GMVEA  604 (717)
T ss_pred             cCCCEEEEcCCCCCch----hcccHHHHHHHHHCCCCEEEECHHHH-HHhhh
Confidence            4699999988743333    33557788888889999999999877 57765

This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.

>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase

Probab=95.11  E-value=0.051  Score=40.61  Aligned_cols=50  Identities=14%  Similarity=0.060  Sum_probs=29.9

Q ss_pred             CCccEEEEcCCccChhccccChHHHHHHHHH---HHCC--CeEEEEcchhHHHhhh
Q 045076           25 AVFDLIALPVCMPDATNLKESKVLETIVKKQ---ASNG--RLYAAVCASPAVALGS   75 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~---~~~~--~~v~aic~g~~~~La~   75 (145)
                      +.+|.|++|||..........+....+++..   .++|  .+|.++|-|-. +|+.
T Consensus        53 ~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG~Q-lL~~  107 (273)
T cd01747          53 KSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLGFE-LLTY  107 (273)
T ss_pred             hhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHHHH-HHHH
Confidence            4789999999942322111223334444444   3444  79999999866 4554

Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>COG3442 Predicted glutamine amidotransferase [General function prediction only]

Probab=94.74  E-value=0.062  Score=38.78  Aligned_cols=51  Identities=24%  Similarity=0.303  Sum_probs=36.3

Q ss_pred             CCCCccEEEEcCCccChhc-c-ccC-hHHHHHHHHHHHCCCeEEEEcchhHHHhhh
Q 045076           23 RDAVFDLIALPVCMPDATN-L-KES-KVLETIVKKQASNGRLYAAVCASPAVALGS   75 (145)
Q Consensus        23 ~~~~~D~liipGG~~~~~~-~-~~~-~~l~~~l~~~~~~~~~v~aic~g~~~~La~   75 (145)
                      +.+.||++|+-||. .-++ + .++ ....+-|+.+..+++++.+||.|.. +|.+
T Consensus        49 ~~~~~Dl~~~GGgq-D~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~Q-lLG~  102 (250)
T COG3442          49 PDDSYDLYFLGGGQ-DYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQ-LLGQ  102 (250)
T ss_pred             CcccccEEEecCch-HHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchh-hccc
Confidence            33489999987774 3222 1 223 3445678888999999999999887 6886

>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]

Probab=94.69  E-value=0.042  Score=42.30  Aligned_cols=59  Identities=15%  Similarity=-0.001  Sum_probs=44.8

Q ss_pred             eccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           14 VADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        14 ~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ..+.+.+++...++|.||+.-|.+++.   .-+..++.++++....+++.+||-|=+ +|+.|
T Consensus       208 P~~t~~eeIl~~~pDGiflSNGPGDP~---~~~~~i~~ik~l~~~~iPifGICLGHQ-llalA  266 (368)
T COG0505         208 PADTSAEEILALNPDGIFLSNGPGDPA---PLDYAIETIKELLGTKIPIFGICLGHQ-LLALA  266 (368)
T ss_pred             cCCCCHHHHHhhCCCEEEEeCCCCChh---HHHHHHHHHHHHhccCCCeEEEcHHHH-HHHHh
Confidence            445556665445899999999965553   456788889999988889999999766 67765

>PLN02335 anthranilate synthase

Probab=94.61  E-value=0.057  Score=39.08  Aligned_cols=47  Identities=11%  Similarity=-0.024  Sum_probs=31.9

Q ss_pred             CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      .+||.|||.||..++.+   .....+++++ ....++|.+||-|-. +|+.+
T Consensus        61 ~~~d~iVisgGPg~p~d---~~~~~~~~~~-~~~~~PiLGIClG~Q-lLa~a  107 (222)
T PLN02335         61 KNPRGVLISPGPGTPQD---SGISLQTVLE-LGPLVPLFGVCMGLQ-CIGEA  107 (222)
T ss_pred             cCCCEEEEcCCCCChhh---ccchHHHHHH-hCCCCCEEEecHHHH-HHHHH
Confidence            35899999999544543   2234555554 345699999999877 56654

>PRK05368 homoserine O-succinyltransferase; Provisional

Probab=94.54  E-value=0.11  Score=39.53  Aligned_cols=56  Identities=13%  Similarity=0.139  Sum_probs=34.6

Q ss_pred             cccCCCCCCccEEEEcCCccChhccccC---hHHHHHHHHHHHCCCeEEEEcchhHHHhh
Q 045076           18 LVSDCRDAVFDLIALPVCMPDATNLKES---KVLETIVKKQASNGRLYAAVCASPAVALG   74 (145)
Q Consensus        18 ~~~~~~~~~~D~liipGG~~~~~~~~~~---~~l~~~l~~~~~~~~~v~aic~g~~~~La   74 (145)
                      .++++....||++||.|.........+.   +++.++++...++.+.+..||-|..+ ++
T Consensus        91 ~~~~i~~~~~DG~IITGAp~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa-~a  149 (302)
T PRK05368         91 TFEDIKDEKFDGLIITGAPVEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQA-AL  149 (302)
T ss_pred             CHHHhccCCCCEEEEcCCCCCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHH-HH
Confidence            3455555689999999984221111111   23555555555668999999997664 44

>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS)

Probab=94.43  E-value=0.032  Score=38.96  Aligned_cols=55  Identities=22%  Similarity=0.167  Sum_probs=36.9

Q ss_pred             cccCCCCCCccEEEEcCCccChhccccCh-----HHHHHHHHHHHCCCeEEEEcchhHHHhh
Q 045076           18 LVSDCRDAVFDLIALPVCMPDATNLKESK-----VLETIVKKQASNGRLYAAVCASPAVALG   74 (145)
Q Consensus        18 ~~~~~~~~~~D~liipGG~~~~~~~~~~~-----~l~~~l~~~~~~~~~v~aic~g~~~~La   74 (145)
                      .++++....||.+||.|..  .+.+.-.+     ++.+.+....++...+..+|-|....|.
T Consensus        54 ~~~~i~~~~yDGlIITGAp--ve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~  113 (175)
T cd03131          54 TFDDIRDAKFDGLIVTGAP--VEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALY  113 (175)
T ss_pred             CHHHccccCCCEEEEeCCC--cccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence            3445556789999999973  43333233     5666666666788999999997554333

Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti

>TIGR00337 PyrG CTP synthase

Probab=94.09  E-value=0.1  Score=42.39  Aligned_cols=43  Identities=14%  Similarity=0.117  Sum_probs=32.2

Q ss_pred             CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHH
Q 045076           25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAV   71 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~   71 (145)
                      .++|.|++|||. +..   ..+..+..++.+.+++.++.+||-|-++
T Consensus       342 ~~~dGIiLpGG~-G~~---~~~g~i~ai~~a~e~~iP~LGIClG~Ql  384 (525)
T TIGR00337       342 KGVDGILVPGGF-GER---GVEGKILAIKYARENNIPFLGICLGMQL  384 (525)
T ss_pred             cCCCEEEeCCCC-CCh---hhcChHHHHHHHHHcCCCEEEEcHHHHH
Confidence            468999999995 332   2344556777777889999999998663

CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).

>PLN02327 CTP synthase

Probab=94.01  E-value=0.11  Score=42.43  Aligned_cols=44  Identities=16%  Similarity=0.063  Sum_probs=32.6

Q ss_pred             CCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHH
Q 045076           24 DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAV   71 (145)
Q Consensus        24 ~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~   71 (145)
                      ..++|.|++|||. +..   ..+..+..++.+.++++++.+||-|-++
T Consensus       360 L~~~DGIvvpGGf-G~~---~~~G~i~ai~~are~~iP~LGIClGmQl  403 (557)
T PLN02327        360 LKGADGILVPGGF-GDR---GVEGKILAAKYARENKVPYLGICLGMQI  403 (557)
T ss_pred             hccCCEEEeCCCC-CCc---ccccHHHHHHHHHHcCCCEEEEcHHHHH
Confidence            3479999999995 332   2234456677777899999999998664

>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.76  E-value=0.054  Score=36.81  Aligned_cols=48  Identities=21%  Similarity=0.176  Sum_probs=34.4

Q ss_pred             CccEEEEcCCccChhcc---ccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           26 VFDLIALPVCMPDATNL---KESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        26 ~~D~liipGG~~~~~~~---~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      +.|+|++.||.  +..+   ..+..+.+.|++..++|.++++..+| +.++...
T Consensus        35 ~ad~I~~~GG~--~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAG-A~i~~~~   85 (154)
T PF03575_consen   35 EADAIFLGGGD--TFRLLRQLKETGLDEAIREAYRKGGVIIGTSAG-AMILGPS   85 (154)
T ss_dssp             HSSEEEE--S---HHHHHHHHHHTTHHHHHHHHHHTTSEEEEETHH-HHCTSSB
T ss_pred             hCCEEEECCCC--HHHHHHHHHhCCHHHHHHHHHHCCCEEEEEChH-HhhccCc
Confidence            68999999994  3332   34567889999999999999999985 6555443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.

>PRK00074 guaA GMP synthase; Reviewed

Probab=93.61  E-value=0.093  Score=42.67  Aligned_cols=46  Identities=9%  Similarity=-0.042  Sum_probs=30.1

Q ss_pred             CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++|.||+|||..+... ...+.+.   +...+.+++|.+||-|-+ +|+.+
T Consensus        46 ~~dgIIlsGGp~sv~~-~~~p~~~---~~i~~~~~PvLGIC~G~Q-lLa~~   91 (511)
T PRK00074         46 NPKGIILSGGPASVYE-EGAPRAD---PEIFELGVPVLGICYGMQ-LMAHQ   91 (511)
T ss_pred             CCCEEEECCCCccccc-CCCcccc---HHHHhCCCCEEEECHHHH-HHHHH
Confidence            4699999999533222 1223332   344567899999999877 57664

>COG2071 Predicted glutamine amidotransferases [General function prediction only]

Probab=93.46  E-value=0.21  Score=36.54  Aligned_cols=48  Identities=10%  Similarity=0.169  Sum_probs=36.0

Q ss_pred             CCccEEEEcCCccChhc---------------cccChHHHHHHHHHHHCCCeEEEEcchhHHHhh
Q 045076           25 AVFDLIALPVCMPDATN---------------LKESKVLETIVKKQASNGRLYAAVCASPAVALG   74 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~---------------~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La   74 (145)
                      +..|.|+++||. +...               ..+|.--+.+|+.+-+++++|.+||=|..+ |-
T Consensus        59 ~~iDgliltGg~-nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~Ql-lN  121 (243)
T COG2071          59 DLIDGLILTGGS-NVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQL-LN  121 (243)
T ss_pred             hhccEEEecCCC-cCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHH-HH
Confidence            468999999993 3211               124455778999999999999999998774 44

>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.32  E-value=0.094  Score=37.80  Aligned_cols=48  Identities=13%  Similarity=0.170  Sum_probs=27.2

Q ss_pred             CCccEEEEcCCccChh--c-------------cccChHHHHHHHHHHHCCCeEEEEcchhHHH
Q 045076           25 AVFDLIALPVCMPDAT--N-------------LKESKVLETIVKKQASNGRLYAAVCASPAVA   72 (145)
Q Consensus        25 ~~~D~liipGG~~~~~--~-------------~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~   72 (145)
                      +..|.|++|||..+..  .             ..++.--+.+++.+.+++++|.+||-|-.++
T Consensus        57 ~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~~PilGICrG~Q~l  119 (217)
T PF07722_consen   57 DRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRGKPILGICRGMQLL  119 (217)
T ss_dssp             HCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT--EEEETHHHHHH
T ss_pred             hhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcCCCEEEEcHHHHHH
Confidence            4789999999952221  0             0122234466677778999999999987743

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.

>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=93.25  E-value=0.095  Score=42.84  Aligned_cols=53  Identities=11%  Similarity=0.112  Sum_probs=36.1

Q ss_pred             ccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           19 VSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        19 ~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++++...++|.||+.||..++.+   +....++++.+ ..+.+|.+||-|-. +|+.+
T Consensus        37 ~~~~~~~~~d~vIlsgGP~~p~~---~~~~~~li~~~-~~~~PvLGIClG~Q-lLa~a   89 (534)
T PRK14607         37 IEEIEALNPSHIVISPGPGRPEE---AGISVEVIRHF-SGKVPILGVCLGHQ-AIGYA   89 (534)
T ss_pred             HHHHHhcCCCEEEECCCCCChhh---CCccHHHHHHh-hcCCCEEEEcHHHH-HHHHH
Confidence            34443346899999999644443   23345677664 57899999999877 57764

>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins

Probab=92.70  E-value=0.17  Score=36.15  Aligned_cols=49  Identities=18%  Similarity=0.103  Sum_probs=33.4

Q ss_pred             CCccEEEEcCCccChhcc---ccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATNL---KESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~---~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      .+.|+|+++||.  ...+   .....+.+.|++..++|.++++.|+| +.++...
T Consensus        79 ~~ad~I~~~GG~--~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAG-A~~~~~~  130 (210)
T cd03129          79 LEADGIFVGGGN--QLRLLSVLRETPLLDAILKRVARGVVIGGTSAG-AAVMGET  130 (210)
T ss_pred             hhCCEEEEcCCc--HHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHH-HHHhhhc
Confidence            479999999994  3222   22333555555556699999999996 5577763

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from

>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade

Probab=92.30  E-value=0.24  Score=42.11  Aligned_cols=47  Identities=13%  Similarity=0.036  Sum_probs=30.3

Q ss_pred             CCccEEEEcCCccChhccccChHHHHHHHHHHHC----CCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASN----GRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~----~~~v~aic~g~~~~La~a   76 (145)
                      ..||.|||.||.+.+.    ++.-..++++..+.    ..+|.+||-|-+ +|+.+
T Consensus        52 ~~~D~VVIspGPG~p~----~~~~~~i~~~i~~~~~~~~iPvLGIClG~Q-lLa~a  102 (742)
T TIGR01823        52 PLFDAIVVGPGPGNPN----NAQDMGIISELWELANLDEVPVLGICLGFQ-SLCLA  102 (742)
T ss_pred             cCCCEEEECCCCCCcc----chhhhHHHHHHHHhcccCCCcEEEEchhhH-HHHhh
Confidence            4799999999854332    22223344444433    599999999877 56654

This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.

>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=92.22  E-value=0.2  Score=40.96  Aligned_cols=46  Identities=7%  Similarity=-0.005  Sum_probs=30.3

Q ss_pred             CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++|.|||.||...+.+....+   +++++ ...+++|.+||-|-+ +|+.+
T Consensus        48 ~~~~IIlSpGPg~p~d~~~~~---~i~~~-~~~~iPILGIClG~Q-lLa~a   93 (531)
T PRK09522         48 SNPVLMLSPGPGVPSEAGCMP---ELLTR-LRGKLPIIGICLGHQ-AIVEA   93 (531)
T ss_pred             CcCEEEEcCCCCChhhCCCCH---HHHHH-HhcCCCEEEEcHHHH-HHHHh
Confidence            578999999964554332222   33332 346899999999877 57764

>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]

Probab=91.91  E-value=0.56  Score=40.85  Aligned_cols=48  Identities=15%  Similarity=0.076  Sum_probs=34.6

Q ss_pred             CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++||.||+..|.+++..   -+.+..-+++....+++|++||.| -.+||.+
T Consensus       209 ~~yDGlflSNGPGdPe~---~~~~v~~vr~lL~~~~PvfGIClG-HQllA~A  256 (1435)
T KOG0370|consen  209 EEYDGLFLSNGPGDPEL---CPLLVQNVRELLESNVPVFGICLG-HQLLALA  256 (1435)
T ss_pred             cccceEEEeCCCCCchh---hHHHHHHHHHHHhCCCCeEEEehh-hHHHHHh
Confidence            38999999999644432   345555566666667999999996 4578865

>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=91.43  E-value=0.48  Score=38.22  Aligned_cols=40  Identities=13%  Similarity=0.159  Sum_probs=32.5

Q ss_pred             ccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhH
Q 045076           27 FDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPA   70 (145)
Q Consensus        27 ~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~   70 (145)
                      +|.|+||||+ +.   +.-+--+.-++.+..++.+..+||-|-+
T Consensus       344 ~dgIlVPGGF-G~---RG~eGkI~Ai~yAREn~iP~lGIClGmQ  383 (533)
T COG0504         344 VDGILVPGGF-GY---RGVEGKIAAIRYARENNIPFLGICLGMQ  383 (533)
T ss_pred             CCEEEeCCCC-Cc---CchHHHHHHHHHHHhcCCCEEEEchhHH
Confidence            8999999996 43   3456667777888889999999999865

>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=91.18  E-value=0.63  Score=32.94  Aligned_cols=57  Identities=11%  Similarity=0.130  Sum_probs=39.6

Q ss_pred             CCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc---------cccCCcee
Q 045076           23 RDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW---------GLLKGLKA   84 (145)
Q Consensus        23 ~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a---------gll~g~~~   84 (145)
                      ...++|.|+|.=|.+.+.   +.....+.|+++ .+..+|.+||-|=+ .++.+         .+..||.-
T Consensus        42 ~~~~pd~iviSPGPG~P~---d~G~~~~~i~~~-~~~~PiLGVCLGHQ-ai~~~fGg~V~~a~~~~HGK~s  107 (191)
T COG0512          42 EALKPDAIVISPGPGTPK---DAGISLELIRRF-AGRIPILGVCLGHQ-AIAEAFGGKVVRAKEPMHGKTS  107 (191)
T ss_pred             hhcCCCEEEEcCCCCChH---HcchHHHHHHHh-cCCCCEEEECccHH-HHHHHhCCEEEecCCCcCCeee
Confidence            334689999977743343   455678888888 66789999999765 56653         35666654

>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase

Probab=91.17  E-value=0.39  Score=34.61  Aligned_cols=48  Identities=15%  Similarity=0.030  Sum_probs=36.5

Q ss_pred             CCccEEEEcCCccChhc---cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhh
Q 045076           25 AVFDLIALPVCMPDATN---LKESKVLETIVKKQASNGRLYAAVCASPAVALGS   75 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~---~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~   75 (145)
                      .+.|+|++.||.  ...   ......+.+.|++..++|.++++..+| +.++..
T Consensus        82 ~~ad~I~~~GG~--~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAG-A~i~~~  132 (217)
T cd03145          82 RDADGIFFTGGD--QLRITSALGGTPLLDALRKVYRGGVVIGGTSAG-AAVMSD  132 (217)
T ss_pred             HhCCEEEEeCCc--HHHHHHHHcCChHHHHHHHHHHcCCEEEEccHH-HHhhhh
Confidence            478999999994  322   234567888999999999999999996 546554

Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.

>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]

Probab=90.34  E-value=0.64  Score=33.35  Aligned_cols=50  Identities=18%  Similarity=0.182  Sum_probs=36.5

Q ss_pred             CCCccEEEEcCCccChhccccC---hHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           24 DAVFDLIALPVCMPDATNLKES---KVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        24 ~~~~D~liipGG~~~~~~~~~~---~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      .+.||.++|.|....+  ..+.   -.|..++++.....+.|.+||-|=. ++|++
T Consensus        57 l~ky~gfvIsGS~~dA--f~d~dWI~KLcs~~kkld~mkkkvlGICFGHQ-iiara  109 (245)
T KOG3179|consen   57 LEKYDGFVISGSKHDA--FSDADWIKKLCSFVKKLDFMKKKVLGICFGHQ-IIARA  109 (245)
T ss_pred             hhhhceEEEeCCcccc--cccchHHHHHHHHHHHHHhhccceEEEeccHH-HHHHh
Confidence            4589999999974322  2222   3577888888888899999999766 67765

>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]

Probab=88.34  E-value=1.2  Score=34.54  Aligned_cols=62  Identities=13%  Similarity=0.211  Sum_probs=42.5

Q ss_pred             CCEEeccccccCCCCCCccEEEEcCCccCh---hccccChHHHHHHHHHHHCCCeEEEEcchhHHHhh
Q 045076           10 GVKIVADALVSDCRDAVFDLIALPVCMPDA---TNLKESKVLETIVKKQASNGRLYAAVCASPAVALG   74 (145)
Q Consensus        10 G~~i~~d~~~~~~~~~~~D~liipGG~~~~---~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La   74 (145)
                      |+.+.--.+-.|+.  .-|-||+||- ++.   .+.....-+.+-|+++..+++++.+||-|-..++.
T Consensus        25 g~~i~~v~~P~DI~--~a~rLIfPGV-Gnfg~~~D~L~~~Gf~eplr~YiesgkPfmgicvGlQaLF~   89 (541)
T KOG0623|consen   25 GFSIKDVQTPGDIL--NADRLIFPGV-GNFGPAMDVLNRTGFAEPLRKYIESGKPFMGICVGLQALFD   89 (541)
T ss_pred             CceeeeccCchhhc--cCceEeecCc-ccchHHHHHHhhhhhHHHHHHHHhcCCCeEeehhhHHHHhc
Confidence            45554444444544  6789999994 221   22345567788889999999999999998765544

>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A

Probab=88.21  E-value=0.29  Score=33.46  Aligned_cols=42  Identities=17%  Similarity=0.169  Sum_probs=30.0

Q ss_pred             CCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076           23 RDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA   67 (145)
Q Consensus        23 ~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~   67 (145)
                      +.++||.|||  |.+-+ ...-.+.+..||++..-+||.|+.+|+
T Consensus        70 d~~~YD~I~l--G~PvW-~~~~~~pv~tFL~~~~~~gK~v~~F~T  111 (156)
T PF12682_consen   70 DLSDYDTIFL--GTPVW-WGTPPPPVRTFLEQYDFSGKTVIPFCT  111 (156)
T ss_dssp             -GGG-SEEEE--EEEEE-TTEE-CHHHHHHHCTTTTTSEEEEEEE
T ss_pred             CcccCCEEEE--echHH-cCCCCHHHHHHHHhcCCCCCcEEEEEe
Confidence            4468999998  33433 334577999999998888999999886

>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]

Probab=87.84  E-value=1.4  Score=35.61  Aligned_cols=49  Identities=20%  Similarity=0.280  Sum_probs=32.4

Q ss_pred             CccEEEEcCCccChhcc--ccChHHHHHHHHHHHCCCeEEEEcchhHHHhhh
Q 045076           26 VFDLIALPVCMPDATNL--KESKVLETIVKKQASNGRLYAAVCASPAVALGS   75 (145)
Q Consensus        26 ~~D~liipGG~~~~~~~--~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~   75 (145)
                      +.|++|+||-.....++  .+..-+-+-+.++.+++..|.+||.|-+ +|.+
T Consensus       290 ~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~~~~~viGICGG~Q-mLG~  340 (486)
T COG1492         290 DADLVILPGSKNTIADLKILREGGMDEKILEYARKGGDVIGICGGYQ-MLGR  340 (486)
T ss_pred             CCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHHhCCCCEEEEcchHH-hhhh
Confidence            58999999984222222  1222333455566677899999999876 5775

>TIGR02069 cyanophycinase cyanophycinase

Probab=87.59  E-value=0.85  Score=33.68  Aligned_cols=48  Identities=15%  Similarity=0.088  Sum_probs=36.5

Q ss_pred             CCccEEEEcCCccChhc---cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhh
Q 045076           25 AVFDLIALPVCMPDATN---LKESKVLETIVKKQASNGRLYAAVCASPAVALGS   75 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~---~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~   75 (145)
                      .+.|+|++.||.  ..+   ....-.+.+.|++.+++|.++++..+| +.+++.
T Consensus        81 ~~ad~I~~~GGn--q~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAG-A~i~~~  131 (250)
T TIGR02069        81 SNATGIFFTGGD--QLRITSLLGDTPLLDRLRKRVHEGIILGGTSAG-AAVMSD  131 (250)
T ss_pred             hhCCEEEEeCCC--HHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHH-HHhccc
Confidence            478999999994  322   235667888899999999999999996 445653

This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.

>COG4090 Uncharacterized protein conserved in archaea [Function unknown]

Probab=87.27  E-value=2.8  Score=27.87  Aligned_cols=63  Identities=11%  Similarity=0.094  Sum_probs=40.6

Q ss_pred             ecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccc
Q 045076            7 ACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGL   78 (145)
Q Consensus         7 ~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agl   78 (145)
                      +.+|+.+-   .+++.  +..|++++-||.+-+..=...+...+++.+.  .++.+.++|- -. +..++|.
T Consensus        71 ~d~G~ql~---e~e~~--n~aDvvVLlGGLaMP~~gv~~d~~kel~ee~--~~kkliGvCf-m~-mF~ragW  133 (154)
T COG4090          71 TDHGYQLG---EREEL--NSADVVVLLGGLAMPKIGVTPDDAKELLEEL--GNKKLIGVCF-MN-MFERAGW  133 (154)
T ss_pred             eccceecC---Ccccc--ccccEEEEEcccccCcCCCCHHHHHHHHHhc--CCCceEEeeH-HH-HHHHcCc
Confidence            44565551   22333  3589999999974333323456788888744  3567999998 45 5788875

>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function

Probab=86.44  E-value=0.29  Score=33.09  Aligned_cols=51  Identities=12%  Similarity=0.118  Sum_probs=35.6

Q ss_pred             CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076           26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK   80 (145)
Q Consensus        26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~   80 (145)
                      +.|++++-||.+-+..=...+.+.+++.+..+..  |.++|- -. ++.++|..+
T Consensus        80 ~~D~vVlmGGLAMP~~~v~~e~v~~li~ki~~~~--iiGiCF-ms-~F~kagW~~  130 (147)
T PF09897_consen   80 HPDVVVLMGGLAMPKSGVTPEDVNELIKKISPKK--IIGICF-MS-MFEKAGWDD  130 (147)
T ss_dssp             -EEEEEEEGGGGSTTTS--HHHHHHHHHHHEEEE--EEEEEE-TT-HHHHTTHHH
T ss_pred             CCCEEEEEcccccCCCCCCHHHHHHHHHHhCcCC--EEEEeh-HH-HHHHcCCcc
Confidence            4899999999754433345567888888887554  999998 34 578887644

; PDB: 2R47_D.

>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]

Probab=84.92  E-value=1.6  Score=30.11  Aligned_cols=47  Identities=15%  Similarity=0.140  Sum_probs=35.9

Q ss_pred             ccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHH--CCCeEEEEcch
Q 045076           19 VSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQAS--NGRLYAAVCAS   68 (145)
Q Consensus        19 ~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~--~~~~v~aic~g   68 (145)
                      ..+.++++||.++|..   +......++.+.+|++++..  +.++.+.+|.+
T Consensus        40 ~~~~~l~~ydavVIgA---sI~~~h~~~~~~~Fv~k~~e~L~~kP~A~f~vn   88 (175)
T COG4635          40 VEEPALEDYDAVVIGA---SIRYGHFHEAVQSFVKKHAEALSTKPSAFFSVN   88 (175)
T ss_pred             hhccChhhCceEEEec---chhhhhhHHHHHHHHHHHHHHHhcCCceEEEee
Confidence            3334567999999933   35555678899999999876  68999999984

>PLN02889 oxo-acid-lyase/anthranilate synthase

Probab=84.63  E-value=1.9  Score=37.67  Aligned_cols=48  Identities=19%  Similarity=0.158  Sum_probs=30.6

Q ss_pred             CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      .||.|||.+|.+.+....+-....++|.++  .+.+|.+||-|-+ +|+.+
T Consensus       131 ~~d~IVlSPGPG~P~~~~d~Gi~~~~i~~~--~~iPILGICLGhQ-~i~~~  178 (918)
T PLN02889        131 AFDNIVISPGPGSPTCPADIGICLRLLLEC--RDIPILGVCLGHQ-ALGYV  178 (918)
T ss_pred             CCCEEEECCCCCCccchHHHHHHHHHHHHh--CCCcEEEEcHHHH-HHHHh
Confidence            689999999954333211112234555543  4699999999866 46653

>COG4285 Uncharacterized conserved protein [Function unknown]

Probab=83.14  E-value=2.7  Score=30.50  Aligned_cols=45  Identities=16%  Similarity=0.199  Sum_probs=32.1

Q ss_pred             CccEEEEcCCccChhcc-ccChHHHHHHHHHHHCCCeEEEEcchhHH
Q 045076           26 VFDLIALPVCMPDATNL-KESKVLETIVKKQASNGRLYAAVCASPAV   71 (145)
Q Consensus        26 ~~D~liipGG~~~~~~~-~~~~~l~~~l~~~~~~~~~v~aic~g~~~   71 (145)
                      .--+|++||| ++.... .-++..-+.+..+.++|....+||+|+-|
T Consensus        49 ~T~lLV~pGG-aDlpY~~~l~g~g~a~i~~yvk~GG~fLGiCAG~YF   94 (253)
T COG4285          49 TTLLLVFPGG-ADLPYVQVLQGLGTARIKNYVKEGGNFLGICAGGYF   94 (253)
T ss_pred             ceEEEEecCC-CCchHHHHhcchhhhhHHHHHhcCCeEEEEeccccc
Confidence            4568899999 443322 22445557778888999999999998643

>PRK06934 flavodoxin; Provisional

Probab=82.86  E-value=1.6  Score=31.77  Aligned_cols=42  Identities=17%  Similarity=0.147  Sum_probs=32.9

Q ss_pred             CCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcch
Q 045076           24 DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCAS   68 (145)
Q Consensus        24 ~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g   68 (145)
                      .++||.|||  |++-+. -.-.+.+..||.+..-.+|.|+.+|+.
T Consensus       127 l~~YD~I~I--G~PIWw-g~~P~~V~tFLe~~d~~GK~I~pF~T~  168 (221)
T PRK06934        127 LADYDQIFI--GYPIWW-YKMPMVMYSFFEQHDFSGKTLIPFTTH  168 (221)
T ss_pred             HHhCCEEEE--Ecchhh-ccccHHHHHHHHhcCCCCCEEEEEEec
Confidence            358999998  434443 345788999999998899999999973

>PF01058 Oxidored_q6: NADH ubiquinone oxidoreductase, 20 Kd subunit; InterPro: IPR006137 NADH:ubiquinone oxidoreductase (complex I) (1

Probab=81.95  E-value=1.9  Score=28.49  Aligned_cols=38  Identities=13%  Similarity=0.159  Sum_probs=31.4

Q ss_pred             CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076           25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA   67 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~   67 (145)
                      .+.|++||-|...     .++....++++++.++.++|.|+++
T Consensus        44 ~~~diliVeG~v~-----~~~~~~~e~~~~~~~~a~~vIAvGt   81 (131)
T PF01058_consen   44 EEADILIVEGSVP-----RNMEEALEWLKELRPKAKAVIAVGT   81 (131)
T ss_dssp             TTTEEEEEESBEE-----TGGEEHHHHHHHHHGCSSEEEEEHH
T ss_pred             cCceEEEEEeecc-----CCchHHHHHHHHHccCCceeEcCCC
Confidence            3789999999742     1347889999999999999999987

6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 20 kDa (in mammals) [], which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 4Fe-4S iron-sulphur cluster. The 20 kDa subunit has been found to be nuclear encoded, as a precursor form with a transit peptide in mammals, and in Neurospora crassa. It is and chloroplast encoded in various higher plants (gene ndhK or psbG).; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0048038 quinone binding, 0051539 4 iron, 4 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 3MYR_E 3RGW_S 2FUG_F 3IAS_6 3I9V_F 3IAM_F 2YBB_6 3M9S_F 2FRV_G 1YQ9_B ....

>COG3340 PepE Peptidase E [Amino acid transport and metabolism]

Probab=81.89  E-value=1.7  Score=31.45  Aligned_cols=45  Identities=22%  Similarity=0.306  Sum_probs=35.3

Q ss_pred             CccEEEEcCCccChhccc---cChHHHHHHHHHHHCCCeEEEEcchhHHHhh
Q 045076           26 VFDLIALPVCMPDATNLK---ESKVLETIVKKQASNGRLYAAVCASPAVALG   74 (145)
Q Consensus        26 ~~D~liipGG~~~~~~~~---~~~~l~~~l~~~~~~~~~v~aic~g~~~~La   74 (145)
                      +-|+|+|.||  +...+.   +.-.+.+.|++..++|.+.++..+| + +++
T Consensus        84 ~~d~IyVgGG--NTF~LL~~lke~gld~iIr~~vk~G~~YiG~SAG-A-~ia  131 (224)
T COG3340          84 KADIIYVGGG--NTFNLLQELKETGLDDIIRERVKAGTPYIGWSAG-A-NIA  131 (224)
T ss_pred             hccEEEECCc--hHHHHHHHHHHhCcHHHHHHHHHcCCceEEeccC-c-eee
Confidence            5899999887  455543   4567889999999999999999996 5 344

>PF01799 Fer2_2: [2Fe-2S] binding domain; InterPro: IPR002888 The [2Fe-2S] binding domain is found in a range of enzymes including dehydrogenases, oxidases and oxidoreductases

Probab=81.54  E-value=0.35  Score=28.95  Aligned_cols=41  Identities=20%  Similarity=0.421  Sum_probs=29.9

Q ss_pred             cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCCce
Q 045076           42 LKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLK   83 (145)
Q Consensus        42 ~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~~   83 (145)
                      +..++.+..+-+.|.+.+..-++.|+ |.++++...+|+..+
T Consensus         5 l~~~~~~~~iq~af~~~~a~QCGfCt-pG~im~~~~ll~~~~   45 (75)
T PF01799_consen    5 LASDGELHPIQQAFVEHGAVQCGFCT-PGMIMAAYALLRRNP   45 (75)
T ss_dssp             SSBTTB--HHHHHHHHTT--SSSSSH-HHHHHHHHHHHHHSS
T ss_pred             CCCCCCcCHHHHHHHHhCCCcCCcch-HHHHHHHHHHhhccc
Confidence            34567777888888899999999999 668999999998544

The aldehyde oxido-reductase (Mop) from the sulphate reducing anaerobic Gram-negative bacterium Desulfovibrio gigas is a homodimer of 907 amino acid residues subunits and is a member of the xanthine oxidase family. The protein contains a molybdopterin cofactor (Mo-co) and two different [2Fe-2S] centres. It is folded into four domains of which the first two bind the iron sulphur centres and the last two are involved in Mo-co binding. Mo-co is a molybdenum molybdopterin cytosine dinucleotide. Molybdopterin forms a tricyclic system with the pterin bicycle annealed to a pyran ring. The molybdopterin dinucleotide is deeply buried in the protein. The cis-dithiolene group of the pyran ring binds the molybdenum, which is coordinated by three more (oxygen) ligands [].; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 2E3T_A 1WYG_A 3AN1_B 2E1Q_C 2CKJ_A 3B9J_I 3NVY_J 1FO4_B 3NRZ_J 3AM9_A ....

>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=80.50  E-value=3.6  Score=33.05  Aligned_cols=41  Identities=15%  Similarity=0.070  Sum_probs=31.0

Q ss_pred             CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhH
Q 045076           26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPA   70 (145)
Q Consensus        26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~   70 (145)
                      ..|.|+||||++ .   +--+-.+.-.+.+.+++.+..+||-|-+
T Consensus       363 ~adGilvPGGFG-~---RGveG~i~Aak~ARen~iP~LGiCLGmQ  403 (585)
T KOG2387|consen  363 SADGILVPGGFG-D---RGVEGKILAAKWARENKIPFLGICLGMQ  403 (585)
T ss_pred             cCCeEEeCCccc-c---cchhHHHHHHHHHHhcCCCeEeeehhhh
Confidence            479999999973 3   2344555666777889999999999754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	145
4e08_A	190	Crystal Structure Of Drosophila Melanogaster Dj-1be		5e-17
3b36_A	192	Structure Of M26l Dj-1 Length = 192		3e-16
1pe0_A	197	Crystal Structure Of The K130r Mutant Of Human Dj-1		4e-16
3cza_A	197	Crystal Structure Of E18d Dj-1 Length = 197		4e-16
3cy6_A	197	Crystal Structure Of E18q Dj-1 Length = 197		4e-16
2r1u_A	187	Dj-1 Activation By Catechol Quinone Modification Le		4e-16
3cz9_A	197	Crystal Structure Of E18l Dj-1 Length = 197		4e-16
3sf8_B	191	Structural Insights Into Thiol Stabilization Of Dj-		4e-16
1ucf_A	189	The Crystal Structure Of Dj-1, A Protein Related To		4e-16
2rk4_A	197	Structure Of M26i Dj-1 Length = 197		4e-16
1j42_A	189	Crystal Structure Of Human Dj-1 Length = 189		7e-16
3bwe_A	189	Crystal Structure Of Aggregated Form Of Dj1 Length		8e-16
1pdv_A	197	Crystal Structure Of Human Dj-1, P 31 2 1 Space Gro		9e-16
3b38_A	192	Structure Of A104v Dj-1 Length = 192		1e-15
2rk3_A	197	Structure Of A104t Dj-1 Length = 197		1e-15
2r1t_B	187	Dopamine Quinone Conjugation To Dj-1 Length = 187		2e-15
3ezg_A	196	Crystal Structure Of E18q Dj-1 With Oxidized C106 L		3e-15
3f71_A	196	Crystal Structure Of E18d Dj-1 With Oxidized C106 L		4e-15
2r1t_A	187	Dopamine Quinone Conjugation To Dj-1 Length = 187		4e-15
3cyf_A	197	Crystal Structure Of E18n Dj-1 Length = 197		5e-15
1soa_A	189	Human Dj-1 With Sulfinic Acid Length = 189		5e-15
3sf8_A	191	Structural Insights Into Thiol Stabilization Of Dj-		6e-15
3b3a_A	192	Structure Of E163kR145E DJ-1 Length = 192		7e-15
2rk6_A	192	Structure Of E163k Dj-1 Length = 192		2e-14
2ab0_A	205	Crystal Structure Of E. Coli Protein Yajl (Thij) Le		6e-14
3ot1_A	208	Crystal Structure Of Vc2308 Protein Length = 208		2e-11
3nor_A	231	Crystal Structure Of T102s Isocyanide Hydratase Fro		2e-10
3ot1_B	208	Crystal Structure Of Vc2308 Protein Length = 208		2e-10
3nov_A	231	Crystal Structure Of D17e Isocyanide Hydratase From		3e-10
3noo_A	231	Crystal Structure Of C101a Isocyanide Hydratase Fro		8e-10
3noq_A	231	Crystal Structure Of C101s Isocyanide Hydratase Fro		2e-09
3non_A	231	Crystal Structure Of Isocyanide Hydratase From Pseu		3e-09
1g2i_A	166	Crystal Structure Of A Novel Intracellular Protease		7e-08
3l18_A	168	Ton1285, An Intracellular Protease From Thermococcu		2e-05
2vrn_A	190	The Structure Of The Stress Response Protein Dr1199		2e-05
3fse_A	365	Crystal Structure Of A Two-Domain Protein Containin		4e-05

>pdb|4E08|A Chain A, Crystal Structure Of Drosophila Melanogaster Dj-1beta Length = 190

Iteration: 1
 Score = 83.2 bits (204), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
Query: 11  VKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPA 70
           V+I+ D  ++      FD++ LP  +  +  + ES ++  +++ Q S G L AA+CA+P 
Sbjct: 52  VQILPDTSLAQVASDKFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPT 111
Query: 71  VALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVE 130
           V L   G+  G   T YPS   QL    +   +  V +DG ++T+RGPGT  EFA+ + E
Sbjct: 112 V-LAKHGVASGKSLTSYPSMKPQLVNNYSYVDDKTVVKDGNLITSRGPGTAYEFALKIAE 170
Query: 131 QLYRKGKADEVS 142
           +L  K K  EV+
Sbjct: 171 ELAGKEKVQEVA 182

>pdb|3B36|A Chain A, Structure Of M26l Dj-1 Length = 192

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 11  VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           V I  DA + D + +  +D++ LP     A NL ES  ++ I+K+Q +   L AA+CA P
Sbjct: 53  VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP 112
Query: 70  AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
             AL +  +  G K T +P   +++      T  E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 113 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 171
Query: 129 VEQLYRKGKADEVSGPL 145
           VE L  K  A +V  PL
Sbjct: 172 VEALNGKEVAAQVKAPL 188

>pdb|1PE0|A Chain A, Crystal Structure Of The K130r Mutant Of Human Dj-1 Length = 197

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 11  VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           V I  DA + D + +  +D++ LP     A NL ES  ++ I+K+Q +   L AA+CA P
Sbjct: 50  VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP 109
Query: 70  AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
             AL +  +  G K T +P   +++      T  E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPLARDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168
Query: 129 VEQLYRKGKADEVSGPL 145
           VE L  K  A +V  PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185

>pdb|3CZA|A Chain A, Crystal Structure Of E18d Dj-1 Length = 197

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 11  VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           V I  DA + D + +  +D++ LP     A NL ES  ++ I+K+Q +   L AA+CA P
Sbjct: 50  VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP 109
Query: 70  AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
             AL +  +  G K T +P   +++      T  E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168
Query: 129 VEQLYRKGKADEVSGPL 145
           VE L  K  A +V  PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185

>pdb|3CY6|A Chain A, Crystal Structure Of E18q Dj-1 Length = 197

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 11  VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           V I  DA + D + +  +D++ LP     A NL ES  ++ I+K+Q +   L AA+CA P
Sbjct: 50  VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP 109
Query: 70  AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
             AL +  +  G K T +P   +++      T  E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168
Query: 129 VEQLYRKGKADEVSGPL 145
           VE L  K  A +V  PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185

>pdb|2R1U|A Chain A, Dj-1 Activation By Catechol Quinone Modification Length = 187

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 11  VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           V I  DA + D + +  +D++ LP     A NL ES  ++ I+K+Q +   L AA+CA P
Sbjct: 49  VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP 108
Query: 70  AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
             AL +  +  G K T +P   +++      T  E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 109 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 167
Query: 129 VEQLYRKGKADEVSGPL 145
           VE L  K  A +V  PL
Sbjct: 168 VEALNGKEVAAQVKAPL 184

>pdb|3CZ9|A Chain A, Crystal Structure Of E18l Dj-1 Length = 197

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 11  VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           V I  DA + D + +  +D++ LP     A NL ES  ++ I+K+Q +   L AA+CA P
Sbjct: 50  VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP 109
Query: 70  AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
             AL +  +  G K T +P   +++      T  E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168
Query: 129 VEQLYRKGKADEVSGPL 145
           VE L  K  A +V  PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185

>pdb|3SF8|B Chain B, Structural Insights Into Thiol Stabilization Of Dj-1 Length = 191

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 11  VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           V I  DA + D + +  +D++ LP     A NL ES  ++ I+K+Q +   L AA+CA P
Sbjct: 50  VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP 109
Query: 70  AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
             AL +  +  G K T +P   +++      T  E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168
Query: 129 VEQLYRKGKADEVSGPL 145
           VE L  K  A +V  PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185

>pdb|1UCF|A Chain A, The Crystal Structure Of Dj-1, A Protein Related To Male Fertility And Parkinson's Disease Length = 189

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 11  VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           V I  DA + D + +  +D++ LP     A NL ES  ++ I+K+Q +   L AA+CA P
Sbjct: 50  VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP 109
Query: 70  AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
             AL +  +  G K T +P   +++      T  E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168
Query: 129 VEQLYRKGKADEVSGPL 145
           VE L  K  A +V  PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185

>pdb|2RK4|A Chain A, Structure Of M26i Dj-1 Length = 197

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 11  VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           V I  DA + D + +  +D++ LP     A NL ES  ++ I+K+Q +   L AA+CA P
Sbjct: 50  VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP 109
Query: 70  AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
             AL +  +  G K T +P   +++      T  E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168
Query: 129 VEQLYRKGKADEVSGPL 145
           VE L  K  A +V  PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185

>pdb|1J42|A Chain A, Crystal Structure Of Human Dj-1 Length = 189

Iteration: 1
 Score = 79.3 bits (194), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 11  VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           V I  DA + D + +  +D++ LP     A NL ES  ++ I+K+Q +   L AA+CA P
Sbjct: 50  VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP 109
Query: 70  AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
             AL +  +  G K T +P   +++      T  E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGCGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168
Query: 129 VEQLYRKGKADEVSGPL 145
           VE L  K  A +V  PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185

>pdb|3BWE|A Chain A, Crystal Structure Of Aggregated Form Of Dj1 Length = 189

Iteration: 1
 Score = 79.0 bits (193), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 11  VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           V I  DA + D + +  +D++ LP     A NL ES  ++ I+K+Q +   L AA+CA P
Sbjct: 50  VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP 109
Query: 70  AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
             AL +  +  G K T +P   ++       T  E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPLAKDKXXNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168
Query: 129 VEQLYRKGKADEVSGPL 145
           VE L  K  A +V  PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185

>pdb|1PDV|A Chain A, Crystal Structure Of Human Dj-1, P 31 2 1 Space Group Length = 197

Iteration: 1
 Score = 79.0 bits (193), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 11  VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           V I  DA + D + +  +D++ LP     A NL ES  ++ I+K+Q +   L AA+CA P
Sbjct: 50  VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP 109
Query: 70  AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
             AL +  +  G K T +P   ++       T  E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPLAKDKXXNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168
Query: 129 VEQLYRKGKADEVSGPL 145
           VE L  K  A +V  PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185

>pdb|3B38|A Chain A, Structure Of A104v Dj-1 Length = 192

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 11  VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           V I  DA + D + +  +D++ LP     A NL ES  ++ I+K+Q +   L A +CA P
Sbjct: 53  VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAVICAGP 112
Query: 70  AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
             AL +  +  G K T +P   +++      T  E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 113 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 171
Query: 129 VEQLYRKGKADEVSGPL 145
           VE L  K  A +V  PL
Sbjct: 172 VEALNGKEVAAQVKAPL 188

>pdb|2RK3|A Chain A, Structure Of A104t Dj-1 Length = 197

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 11  VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           V I  DA + D + +  +D++ LP     A NL ES  ++ I+K+Q +   L A +CA P
Sbjct: 50  VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGP 109
Query: 70  AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
             AL +  +  G K T +P   +++      T  E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168
Query: 129 VEQLYRKGKADEVSGPL 145
           VE L  K  A +V  PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185

>pdb|2R1T|B Chain B, Dopamine Quinone Conjugation To Dj-1 Length = 187

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 11  VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           V I  DA + D + +  +D++ LP     A NL ES  ++ I+K+Q +   L AA+ A P
Sbjct: 49  VVIXPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIAAGP 108
Query: 70  AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
             AL +  +  G K T +P   +++      T  E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 109 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 167
Query: 129 VEQLYRKGKADEVSGPL 145
           VE L  K  A +V  PL
Sbjct: 168 VEALNGKEVAAQVKAPL 184

>pdb|3EZG|A Chain A, Crystal Structure Of E18q Dj-1 With Oxidized C106 Length = 196

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 11  VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           V I  DA + D + +  +D++ LP     A NL ES  ++ I+K+Q +   L AA+ A P
Sbjct: 50  VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGP 109
Query: 70  AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
             AL +  +  G K T +P   +++      T  E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168
Query: 129 VEQLYRKGKADEVSGPL 145
           VE L  K  A +V  PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185

>pdb|3F71|A Chain A, Crystal Structure Of E18d Dj-1 With Oxidized C106 Length = 196

Iteration: 1
 Score = 77.0 bits (188), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 11  VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           V I  DA + D + +  +D++ LP     A NL ES  ++ I+K+Q +   L AA+ A P
Sbjct: 50  VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGP 109
Query: 70  AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
             AL +  +  G K T +P   +++      T  E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168
Query: 129 VEQLYRKGKADEVSGPL 145
           VE L  K  A +V  PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185

>pdb|2R1T|A Chain A, Dopamine Quinone Conjugation To Dj-1 Length = 187

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 11  VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           V I  DA + D + +  +D++ LP     A NL ES  ++ I+K+Q +   L AA+ A P
Sbjct: 49  VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIAAGP 108
Query: 70  AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
             AL +  +  G K T +P   +++      T  E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 109 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 167
Query: 129 VEQLYRKGKADEVSGPL 145
           VE L  K  A +V  PL
Sbjct: 168 VEALNGKEVAAQVKAPL 184

>pdb|3CYF|A Chain A, Crystal Structure Of E18n Dj-1 Length = 197

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 11  VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           V I  DA + D + +  +D++ LP     A NL ES  ++ I+K+Q +   L AA+ A P
Sbjct: 50  VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGP 109
Query: 70  AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
             AL +  +  G K T +P   +++      T  E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168
Query: 129 VEQLYRKGKADEVSGPL 145
           VE L  K  A +V  PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185

>pdb|1SOA|A Chain A, Human Dj-1 With Sulfinic Acid Length = 189

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 11  VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           V I  DA + D + +  +D++ LP     A NL ES  ++ I+K+Q +   L AA+ A P
Sbjct: 50  VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGP 109
Query: 70  AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
             AL +  +  G K T +P   +++      T  E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168
Query: 129 VEQLYRKGKADEVSGPL 145
           VE L  K  A +V  PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185

>pdb|3SF8|A Chain A, Structural Insights Into Thiol Stabilization Of Dj-1 Length = 191

Iteration: 1
 Score = 76.3 bits (186), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 11  VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           V I  DA + D + +  +D++ LP     A NL ES  ++ I+K+Q +   L AA+ A P
Sbjct: 50  VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGP 109
Query: 70  AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
             AL +  +  G K T +P   +++      T  E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168
Query: 129 VEQLYRKGKADEVSGPL 145
           VE L  K  A +V  PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185

>pdb|3B3A|A Chain A, Structure Of E163kR145E DJ-1 Length = 192

Iteration: 1
 Score = 76.3 bits (186), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 11  VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           V I  DA + D + +  +D++ LP     A NL ES  ++ I+K+Q +   L AA+CA P
Sbjct: 53  VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP 112
Query: 70  AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
             AL +  +  G K T +P   +++      T  E+ V++DG ++T+RGPGT+ +FA+A+
Sbjct: 113 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENEVEKDGLILTSRGPGTSFKFALAI 171
Query: 129 VEQLYRKGKADEVSGPL 145
           VE L  K  A +V  PL
Sbjct: 172 VEALNGKEVAAQVKAPL 188

>pdb|2RK6|A Chain A, Structure Of E163k Dj-1 Length = 192

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 11  VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           V I  DA + D + +  +D++ LP     A NL ES  ++ I+K+Q +   L AA+ A P
Sbjct: 53  VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGP 112
Query: 70  AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
             AL +  +  G K T +P   +++      T  E+RV++DG ++T+RGPGT+ +FA+A+
Sbjct: 113 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFKFALAI 171
Query: 129 VEQLYRKGKADEVSGPL 145
           VE L  K  A +V  PL
Sbjct: 172 VEALNGKEVAAQVKAPL 188

>pdb|2AB0|A Chain A, Crystal Structure Of E. Coli Protein Yajl (Thij) Length = 205

Iteration: 1
 Score = 72.8 bits (177), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 82/146 (56%), Gaps = 4/146 (2%)
Query: 2   QLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRL 61
            L +    GVK++ADA + +  D  +D+I LP  +  A   ++S +L   VK+   +GR+
Sbjct: 42  NLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRI 101
Query: 62  YAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKV--VTTRGPG 119
            AA+CA+PA  L    +      T +P+  +++ PA    ++ RV  D +V  +T++GPG
Sbjct: 102 VAAICAAPATVLVPHDIFPIGNMTGFPTLKDKI-PA-EQWLDKRVVWDARVKLLTSQGPG 159
Query: 120 TTMEFAVALVEQLYRKGKADEVSGPL 145
           T ++F + +++ L  + KA EV+  L
Sbjct: 160 TAIDFGLKIIDLLVGREKAHEVASQL 185

>pdb|3OT1|A Chain A, Crystal Structure Of Vc2308 Protein Length = 208

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 60/123 (48%)
Query: 2   QLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRL 61
           +L+V    GV + A+  +  C    FD +ALP  +  A    +S  L  ++   +  G+L
Sbjct: 47  KLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKL 106
Query: 62  YAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTT 121
            AA+CA+PA+         G + TC+P+F + +     +           ++T++GPGT 
Sbjct: 107 VAAICATPALVFAKQQKFVGARXTCHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTA 166
Query: 122 MEF 124
           +EF
Sbjct: 167 LEF 169

>pdb|3NOR|A Chain A, Crystal Structure Of T102s Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 4/111 (3%)
Query: 34  VCMPDATN---LKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSF 90
           +C+P  T    L E       +++QA+  R   +VC S ++ LG+ GLL+G +AT + ++
Sbjct: 69  ICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVC-SGSLVLGAAGLLQGKRATTHWAY 127
Query: 91  MEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEV 141
            E LAP  A  V  RV +DG ++T  G    ++FA+ L  +L+    A  V
Sbjct: 128 HELLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRV 178

>pdb|3OT1|B Chain B, Crystal Structure Of Vc2308 Protein Length = 208

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 59/123 (47%)
Query: 2   QLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRL 61
           +L+V    GV + A+  +  C    FD +ALP  +  A    +S  L  ++   +  G+L
Sbjct: 47  KLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKL 106
Query: 62  YAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTT 121
            AA+ A+PA+         G + TC+P+F + +     +           ++T++GPGT 
Sbjct: 107 VAAIXATPALVFAKQQKFVGARXTCHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTA 166
Query: 122 MEF 124
           +EF
Sbjct: 167 LEF 169

>pdb|3NOV|A Chain A, Crystal Structure Of D17e Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 4/111 (3%)
Query: 34  VCMPDATN---LKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSF 90
           +C+P  T    L E       +++QA+  R   +VC   ++ LG+ GLL+G +AT + ++
Sbjct: 69  ICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVCTG-SLVLGAAGLLQGKRATTHWAY 127
Query: 91  MEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEV 141
            E LAP  A  V  RV +DG ++T  G    ++FA+ L  +L+    A  V
Sbjct: 128 HELLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRV 178

>pdb|3NOO|A Chain A, Crystal Structure Of C101a Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 4/111 (3%)
Query: 34  VCMPDATN---LKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSF 90
           +C+P  T    L E       +++QA+  R Y    A+ ++ LG+ GLL+G +AT + ++
Sbjct: 69  ICIPGGTGVGALMEDPQALAFIRQQAARAR-YVTSVATGSLVLGAAGLLQGKRATTHWAY 127
Query: 91  MEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEV 141
            E LAP  A  V  RV +DG ++T  G    ++FA+ L  +L+    A  V
Sbjct: 128 HELLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRV 178

>pdb|3NOQ|A Chain A, Crystal Structure Of C101s Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 4/111 (3%)
Query: 34  VCMPDATN---LKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSF 90
           +C+P  T    L E       +++QA+  R Y    ++ ++ LG+ GLL+G +AT + ++
Sbjct: 69  ICIPGGTGVGALMEDPQALAFIRQQAARAR-YVTSVSTGSLVLGAAGLLQGKRATTHWAY 127
Query: 91  MEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEV 141
            E LAP  A  V  RV +DG ++T  G    ++FA+ L  +L+    A  V
Sbjct: 128 HELLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRV 178

>pdb|3NON|A Chain A, Crystal Structure Of Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 34  VCMPDATN---LKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSF 90
           +C+P  T    L E       +++QA+  R Y     + ++ LG+ GLL+G +AT + ++
Sbjct: 69  ICIPGGTGVGALMEDPQALAFIRQQAARAR-YVTSVXTGSLVLGAAGLLQGKRATTHWAY 127
Query: 91  MEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEV 141
            E LAP  A  V  RV +DG ++T  G    ++FA+ L  +L+    A  V
Sbjct: 128 HELLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRV 178

>pdb|1G2I|A Chain A, Crystal Structure Of A Novel Intracellular Protease From Pyrococcus Horikoshii At 2 A Resolution Length = 166

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 4/125 (3%)
Query: 9   HGVKIVADALVSDCRDAVFDLIALPVCM-PDATNLKESKVLETIVKKQASNGRLYAAVCA 67
           HG  +  D          FD + LP    P+   L E  V  +I +K  S G+  A++C 
Sbjct: 44  HGYSVKVDLTFDKVNPEEFDALVLPGGRAPERVRLNEKAV--SIARKXFSEGKPVASICH 101
Query: 68  SPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVA 127
            P + + + G+L+G K T YP   +    A    V++ V  DG  V++R P     +   
Sbjct: 102 GPQILISA-GVLRGRKGTSYPGIKDDXINAGVEWVDAEVVVDGNWVSSRVPADLYAWXRE 160
Query: 128 LVEQL 132
            V+ L
Sbjct: 161 FVKLL 165

>pdb|3L18|A Chain A, Ton1285, An Intracellular Protease From Thermococcus Onnurineus Na1 Length = 168

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 4/131 (3%)
Query: 4   RVDACHGVKIVADALVSDCRDAVFDLIALPVCM-PDATNLKESKVLETIVKKQASNGRLY 62
           ++   HG  +  D    +     FD + LP    P+   L E  V+  I ++   + +  
Sbjct: 41  KITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIVRLNEKAVM--ITRRMFEDDKPV 98
Query: 63  AAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTM 122
           A++C  P + + +  +LKG + T   +  + +  A A  +++ V  DG  V++R PG   
Sbjct: 99  ASICHGPQILISA-KVLKGRRGTSTITIRDDVINAGAEWIDAEVVVDGNWVSSRHPGDLY 157
Query: 123 EFAVALVEQLY 133
            +    V+ L+
Sbjct: 158 AWMREFVKLLH 168

>pdb|2VRN|A Chain A, The Structure Of The Stress Response Protein Dr1199 From Deinococcus Radiodurans: A Member Of The Dj-1 Superfamily Length = 190

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 12  KIVADALVSDCRDAVFDLIALP--VCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           K   D +VS+ + + +D + LP     PD   L+E  +    V+     G+  AA+   P
Sbjct: 61  KYRVDHVVSEVQVSDYDGLLLPGGTVNPDKLRLEEGAM--KFVRDMYDAGKPIAAIXHGP 118
Query: 70  AVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALV 129
             +L   G+ +GLK T + S   +L  A A  V+     D  VVT+R P     F   +V
Sbjct: 119 -WSLSETGIAQGLKMTSWSSLKRELTLAGAQWVDEECVTDKGVVTSRKPDDLPAFNKKIV 177
Query: 130 EQL 132
           E+ 
Sbjct: 178 EEF 180

>pdb|3FSE|A Chain A, Crystal Structure Of A Two-Domain Protein Containing Dj-1THIJPFPI- Like And Ferritin-Like Domains (Ava_4496) From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution Length = 365

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
Query: 15  ADALVSDCRDAVFDLIALPVCM-PDATNLKESKVLETIVKKQASNGRLYAAVCASPAVAL 73
           AD   ++   + FD + +P    PD      + V    V++    G+L AAV   P V +
Sbjct: 62  ADGTTTEAIASEFDAVVIPGGXAPDKXRRNPNTV--RFVQEAXEQGKLVAAVXHGPQVLI 119
Query: 74  GSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLY 133
               LL+G +AT + +  +    A A  ++  +  DG ++T+R PG    F  A++ +L 
Sbjct: 120 -EGDLLRGKQATGFIAISKDXXNAGADYLDEALVVDGNLITSREPGDLAIFTTAILSRLG 178
Query: 134 RKGK 137
             GK
Sbjct: 179 YGGK 182

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	145
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	1e-52
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	3e-51
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	4e-50
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	5e-49
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	5e-43
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	1e-38
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	6e-35
2fex_A	188	Conserved hypothetical protein; structural genomic	1e-34
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	7e-34
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	6e-30
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	4e-27
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	2e-26
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	8e-25
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	1e-23
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	1e-19
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	6e-19
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	2e-13
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	4e-13
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	5e-11
1u9c_A	224	APC35852; structural genomics, protein structure i	1e-06
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	1e-06
3gra_A	202	Transcriptional regulator, ARAC family; transcript	2e-06
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	3e-06
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	7e-06
3er6_A	209	Putative transcriptional regulator protein; struct	2e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	4e-05
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	5e-05
3n7t_A	247	Macrophage binding protein; seattle structural gen	5e-04

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} Length = 208

 Score =  164 bits (418), Expect = 1e-52
 Identities = 40/145 (27%), Positives = 71/145 (48%)

Query: 1   KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGR 60
            +L+V    GV + A+  +  C    FD +ALP  +  A    +S  L  ++   +  G+
Sbjct: 46  DKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGAQAFADSTALLALIDAFSQQGK 105

Query: 61  LYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGT 120
           L AA+CA+PA+         G + TC+P+F + +     +           ++T++GPGT
Sbjct: 106 LVAAICATPALVFAKQQKFVGARMTCHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGT 165

Query: 121 TMEFAVALVEQLYRKGKADEVSGPL 145
            +EFA+A++  L     A  V+ P+
Sbjct: 166 ALEFALAMIALLAGVELAQHVAAPM 190

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster} Length = 190

 Score =  160 bits (407), Expect = 3e-51
 Identities = 48/145 (33%), Positives = 75/145 (51%), Gaps = 1/145 (0%)

Query: 1   KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGR 60
               V     V+I+ D  ++      FD++ LP  +  +  + ES ++  +++ Q S G 
Sbjct: 42  GGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGG 101

Query: 61  LYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGT 120
           L AA+CA+P V L   G+  G   T YPS   QL    +   +  V +DG ++T+RGPGT
Sbjct: 102 LIAAICAAPTV-LAKHGVASGKSLTSYPSMKPQLVNNYSYVDDKTVVKDGNLITSRGPGT 160

Query: 121 TMEFAVALVEQLYRKGKADEVSGPL 145
             EFA+ + E+L  K K  EV+  L
Sbjct: 161 AYEFALKIAEELAGKEKVQEVAKGL 185

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2 Length = 205

 Score =  158 bits (401), Expect = 4e-50
 Identities = 44/147 (29%), Positives = 80/147 (54%), Gaps = 4/147 (2%)

Query: 1   KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGR 60
             L +    GVK++ADA + +  D  +D+I LP  +  A   ++S +L   VK+   +GR
Sbjct: 41  GNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGR 100

Query: 61  LYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKV--VTTRGP 118
           + AA+CA+PA  L    +      T +P+  +++       ++ RV  D +V  +T++GP
Sbjct: 101 IVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKI--PAEQWLDKRVVWDARVKLLTSQGP 158

Query: 119 GTTMEFAVALVEQLYRKGKADEVSGPL 145
           GT ++F + +++ L  + KA EV+  L
Sbjct: 159 GTAIDFGLKIIDLLVGREKAHEVASQL 185

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ... Length = 197

 Score =  155 bits (393), Expect = 5e-49
 Identities = 51/147 (34%), Positives = 79/147 (53%), Gaps = 3/147 (2%)

Query: 1   KQLRVDACHGVKIVADALVSDCRDA-VFDLIALPVCMPDATNLKESKVLETIVKKQASNG 59
            +  V     V I  DA + D +    +D++ LP     A NL ES  ++ I+K+Q +  
Sbjct: 40  GKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRK 99

Query: 60  RLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAAT-VESRVQQDGKVVTTRGP 118
            L A +CA P   L +  +  G K T +P   +++      T  E+RV++DG ++T+RGP
Sbjct: 100 GLIATICAGPTA-LLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGP 158

Query: 119 GTTMEFAVALVEQLYRKGKADEVSGPL 145
           GT+ EFA+A+VE L  K  A +V  PL
Sbjct: 159 GTSFEFALAIVEALNGKEVAAQVKAPL 185

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A Length = 194

 Score =  139 bits (353), Expect = 5e-43
 Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 8/151 (5%)

Query: 1   KQLRVDACHGVKIVADALVSDCRDA-----VFDLIALPVCMPDATNLKESKVLETIVKKQ 55
           K   V     V++ A+    +   A      +D+  +P     A  L  +  ++ +VK+ 
Sbjct: 43  KDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEF 102

Query: 56  -ASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVT 114
                +    +CA    A      L   + T +PS   QL       ++  V  +  ++T
Sbjct: 103 YKKPNKWIGMICAGTLTA--KTSGLPNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLIT 160

Query: 115 TRGPGTTMEFAVALVEQLYRKGKADEVSGPL 145
           ++GPGT M F + L+EQ+  K K + V   L
Sbjct: 161 SQGPGTAMLFGLKLLEQVASKDKYNAVYKSL 191

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4} Length = 236

 Score =  129 bits (327), Expect = 1e-38
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 4/141 (2%)

Query: 5   VDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAA 64
             +  G+ +  D  VS+ ++   D++ +           + +   + +K   S  +L  +
Sbjct: 61  HHSQLGMTVKTDGHVSEVKE--QDVVLITSGYRGIPAALQDENFMSALKLDPS-RQLIGS 117

Query: 65  VCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEF 124
           +CA   V L   GLLKG K T  P     L        +  +  +G + T  G  + +  
Sbjct: 118 ICAGSFV-LHELGLLKGKKLTTNPDAKAVLQGMGGDVQDLPLVIEGNIATAGGCLSLLYL 176

Query: 125 AVALVEQLYRKGKADEVSGPL 145
              L E+L+   K  ++   L
Sbjct: 177 VGWLAERLFDSVKRKQIQNQL 197

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482} Length = 175

 Score =  118 bits (298), Expect = 6e-35
 Identities = 22/135 (16%), Positives = 47/135 (34%), Gaps = 10/135 (7%)

Query: 5   VDACHGVKIVADALVSDCRDAV--FDLIALP-----VCMPDATNLKESKVLETIVKKQAS 57
           +    G+ ++ D ++++ +     FD +               N   +  L  ++K    
Sbjct: 43  IKTNSGMVLIVDDVIANLKGHEDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGE 102

Query: 58  NGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRG 117
            G++    CA   +     G+ KG K   +P     +    A   + + + DG   T + 
Sbjct: 103 KGKMMIGHCAGAMM-FDFTGITKGKKVAVHPLAKPAIQNGIA--TDEKSEIDGNFFTAQD 159

Query: 118 PGTTMEFAVALVEQL 132
             T       ++E L
Sbjct: 160 ENTIWTMLPKVIEAL 174

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2 Length = 188

 Score =  118 bits (297), Expect = 1e-34
 Identities = 34/141 (24%), Positives = 53/141 (37%), Gaps = 8/141 (5%)

Query: 5   VDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAA 64
           V +  G+K+  D           D + +P  +           L  +VK+     RL A 
Sbjct: 42  VTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWEKGTAAD--LGGLVKRFRDRDRLVAG 99

Query: 65  VCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAA----TVESRVQQDGKVVTTRGPGT 120
           +CA+ +  LG  G+L  +  T       +  PA         + R   DG VVT  G   
Sbjct: 100 ICAAASA-LGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGS-A 157

Query: 121 TMEFAVALVEQLYRKGKADEV 141
            + FAV +++ L   G   E 
Sbjct: 158 PVSFAVEILKSLGLFGPEAEA 178

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis} Length = 212

 Score =  117 bits (294), Expect = 7e-34
 Identities = 26/132 (19%), Positives = 52/132 (39%), Gaps = 8/132 (6%)

Query: 5   VDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAA 64
           +    G++I  D  + +C     DL+ LP     +  + +  +LE  + +    G + AA
Sbjct: 53  ITTMGGLRIKPDISLDECTLESKDLLILPGGTTWSEEIHQ-PILE-RIGQALKIGTIVAA 110

Query: 65  VCASPAVALGSWGLLKGLKATCYPSFMEQLA----PACAATVESRVQQDGKVVTTRGPGT 120
           +C +    L + G L   K T       ++                  D  +VT  G   
Sbjct: 111 ICGATDA-LANMGYLDTRKHTSNNLEYTKMVCPNYKGEKFYELGPAVSDANLVTASGIA- 168

Query: 121 TMEFAVALVEQL 132
            +EFA+ +++++
Sbjct: 169 PLEFAMEVLKKI 180

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} Length = 365

 Score =  110 bits (276), Expect = 6e-30
 Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 2/137 (1%)

Query: 9   HGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCAS 68
             +   AD   ++   + FD + +P  M     ++ +      V++    G+L AAVC  
Sbjct: 56  GRLSTQADGTTTEAIASEFDAVVIPGGMA-PDKMRRNPNTVRFVQEAMEQGKLVAAVCHG 114

Query: 69  PAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVAL 128
           P V L    LL+G +AT + +  + +  A A  ++  +  DG ++T+R PG    F  A+
Sbjct: 115 PQV-LIEGDLLRGKQATGFIAISKDMMNAGADYLDEALVVDGNLITSREPGDLAIFTTAI 173

Query: 129 VEQLYRKGKADEVSGPL 145
           + +L   GK   +    
Sbjct: 174 LSRLGYGGKDAALPDEK 190

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis} Length = 206

 Score = 99.4 bits (248), Expect = 4e-27
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 9/131 (6%)

Query: 5   VDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAA 64
           V +  G K   D ++     A F+L+ +           ++K L   VK         AA
Sbjct: 43  VSSIGGFKTSVDYIIGL-EPANFNLLVMIGGDS---WSNDNKKLLHFVKTAFQKNIPIAA 98

Query: 65  VCASPAVALGSWGLLKGLKATCYPSFMEQLA---PACAATVESRVQQDGKVVTTRGPGTT 121
           +C +    L   GLL     T    ++ +        ++ VE +  +D  +VT  G    
Sbjct: 99  ICGAVDF-LAKNGLLNNHSHTGNFVYLWKDYKQYKPISSFVEKQAVRDKNLVTANGTA-P 156

Query: 122 MEFAVALVEQL 132
           +EF   ++E +
Sbjct: 157 IEFTNLILEMI 167

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans} Length = 190

 Score = 97.3 bits (243), Expect = 2e-26
 Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 1/136 (0%)

Query: 6   DACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAV 65
           D     K   D +VS+ + + +D + LP    +   L+  +     V+     G+  AA+
Sbjct: 55  DIEPQEKYRVDHVVSEVQVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAI 114

Query: 66  CASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFA 125
           C  P   L   G+ +GLK T + S   +L  A A  V+     D  VVT+R P     F 
Sbjct: 115 CHGPWS-LSETGIAQGLKMTSWSSLKRELTLAGAQWVDEECVTDKGVVTSRKPDDLPAFN 173

Query: 126 VALVEQLYRKGKADEV 141
             +VE+      +   
Sbjct: 174 KKIVEEFAEGDHSSRR 189

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} PDB: 1g2i_A Length = 168

 Score = 92.2 bits (230), Expect = 8e-25
 Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 9   HGVKIVADALVSDCRDAVFDLIALP-VCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67
           HG  +  D    +     FD + LP    P+   ++ ++    I ++   + +  A++C 
Sbjct: 46  HGYSVNVDLTFEEVDPDEFDALVLPGGKAPE--IVRLNEKAVMITRRMFEDDKPVASICH 103

Query: 68  SPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVA 127
            P + L S  +LKG + T   +  + +  A A  +++ V  DG  V++R PG    +   
Sbjct: 104 GPQI-LISAKVLKGRRGTSTITIRDDVINAGAEWIDAEVVVDGNWVSSRHPGDLYAWMRE 162

Query: 128 LVEQLY 133
            V+ L+
Sbjct: 163 FVKLLH 168

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} Length = 396

 Score = 93.7 bits (233), Expect = 1e-23
 Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 8/129 (6%)

Query: 9   HGVKIVADALVSDCRDAVFDLIALPVCM-PDATNLKESKVLETIVKKQASNGRLYAAVCA 67
            G     +A   +   + +D + +P    P+   L  +  +  +VK+ + +G+  A++C 
Sbjct: 72  RGHNFTLNATFDEVDLSKYDGLVIPGGRAPE--YLALTASVVELVKEFSRSGKPIASICH 129

Query: 68  SPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQ----DGKVVTTRGPGTTME 123
              + L +   + G K T Y +    L  A A  VE         DG ++T        E
Sbjct: 130 GQLI-LAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDVCVVDGSLITAATYEGHPE 188

Query: 124 FAVALVEQL 132
           F    V+ L
Sbjct: 189 FIQLFVKAL 197

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} Length = 396

 Score = 82.5 bits (204), Expect = 1e-19
 Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 8/129 (6%)

Query: 9   HGVKIVADALVSDCRDAVFDLIALP-VCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67
            G          D   + +D + +P    P+   L  ++ +  IVK+  ++ +  A++C 
Sbjct: 265 PGHTFALTTNFDDLVSSSYDALVIPGGRAPE--YLALNEHVLNIVKEFMNSEKPVASICH 322

Query: 68  SPAVALGSWGLLKGLKATCYPSFMEQLAPACA----ATVESRVQQDGKVVTTRGPGTTME 123
              + L + G+LKG K T YP+    +              R   DG +VT        E
Sbjct: 323 GQQI-LAAAGVLKGRKCTAYPAVKLNVVLGGGTWLEPDPIDRCFTDGNLVTGAAWPGHPE 381

Query: 124 FAVALVEQL 132
           F   L+  L
Sbjct: 382 FVSQLMALL 390

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2 Length = 193

 Score = 77.7 bits (192), Expect = 6e-19
 Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 5/126 (3%)

Query: 9   HGVKIVADALVSDCRDAVFDLIALPVCM-PDATNLKESKVLETIVKKQASNGRLYAAVCA 67
               +  D  + +   A FD + LP    PD   L+      T  +   ++G+   A+C 
Sbjct: 69  GEASVTIDKSIDEVTPAEFDALLLPGGHSPD--YLRGDNRFVTFTRDFVNSGKPVFAICH 126

Query: 68  SPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQD-GKVVTTRGPGTTMEFAV 126
            P + L S  +++G K T     +  +  A A   +  V  D  ++VT+R P     F  
Sbjct: 127 GPQL-LISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNR 185

Query: 127 ALVEQL 132
             +  L
Sbjct: 186 EALRLL 191

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV} Length = 253

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 2/137 (1%)

Query: 5   VDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAA 64
           V +  G+ IV  A    C      ++  P                  +  + +  +   +
Sbjct: 64  VTSDAGLAIVPTATFGTCPRD-LTVLFAPGGTDGTLAAASDAETLAFMADRGARAKYITS 122

Query: 65  VCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEF 124
           VC S ++ LG+ GLLKG KAT + S  + LA   A   E+RV +D   +T  G    ++F
Sbjct: 123 VC-SGSLILGAAGLLKGYKATSHWSCRDALAGFGAIPTEARVVRDRNRITGAGVTAGLDF 181

Query: 125 AVALVEQLYRKGKADEV 141
            +++V +L  +  A+  
Sbjct: 182 GLSMVAELRDQTYAECA 198

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A Length = 231

 Score = 63.0 bits (154), Expect = 4e-13
 Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 4/137 (2%)

Query: 5   VDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAA 64
           V A  G+ + A    +DC     D+I +P        +++ + L  I ++QA+  R   +
Sbjct: 46  VVASSGLVLQATTSFADCPPL--DVICIPGGTGVGALMEDPQALAFI-RQQAARARYVTS 102

Query: 65  VCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEF 124
           V  + ++ LG+ GLL+G +AT + ++ E LAP  A  V  RV +DG ++T  G    ++F
Sbjct: 103 VS-TGSLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGNLLTGGGITAGIDF 161

Query: 125 AVALVEQLYRKGKADEV 141
           A+ L  +L+    A  V
Sbjct: 162 ALTLAAELFDAATAQRV 178

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum} Length = 211

 Score = 57.2 bits (139), Expect = 5e-11
 Identities = 25/140 (17%), Positives = 53/140 (37%), Gaps = 7/140 (5%)

Query: 5   VDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAA 64
           V++   V++       D       ++ +P        + +   +  I        +   +
Sbjct: 46  VESSQKVRVETSLYTRDENI--EKILFVPGGSGTREKVNDDNFINFI-GNMVKESKYIIS 102

Query: 65  VCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATV---ESRVQQDGKVVTTRGPGTT 121
           VC + +  L   G+L G +AT      + +       +   E+R  +DG + T+ G    
Sbjct: 103 VC-TGSALLSKAGILNGKRATTNKRSFKWVTEQNEDVLWVKEARWVKDGNIYTSSGVSAG 161

Query: 122 MEFAVALVEQLYRKGKADEV 141
           ++  +  +E L  K KA E+
Sbjct: 162 IDMTLGFIEDLIGKEKALEI 181

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2 Length = 224

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 27/143 (18%), Positives = 54/143 (37%), Gaps = 27/143 (18%)

Query: 19  VSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVAL----- 73
           +S      FD I LP       +  +++ L+ ++++ A +GR+ AAVC  P+  +     
Sbjct: 82  LSKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYK 141

Query: 74  -GSWGLLKGLKATCYPSFMEQLAPA--------------------CAATVESRVQQDGKV 112
            G+  ++KG   T +    E+                                  +DG +
Sbjct: 142 DGTP-IVKGKTVTSFTDEEEREVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNL 200

Query: 113 VTTRGPGTTMEFAVALVEQLYRK 135
           +T + P ++   A  +V  L  +
Sbjct: 201 ITGQNPQSSRSTAEKVVAALEER 223

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A Length = 291

 Score = 45.4 bits (107), Expect = 1e-06
 Identities = 27/153 (17%), Positives = 47/153 (30%), Gaps = 28/153 (18%)

Query: 15  ADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVAL- 73
           AD + S   D+ +  I +P        L ES+ +   ++    N R   ++C  PA  L 
Sbjct: 134 ADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLA 193

Query: 74  ---GSWGLLKGLKATCYPSFMEQLAPA-----------------------CAATVESRVQ 107
              G    L G     +P   ++  P                            +  RV 
Sbjct: 194 LRHGDN-PLNGYSICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVH 252

Query: 108 QDGKVVTTRGPGTTMEFAVALVEQLYRKGKADE 140
           +D K++T   P           +++       E
Sbjct: 253 KDRKLLTGDSPFAANALGKLAAQEMLAAYAGLE 285

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida} Length = 202

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 7/135 (5%)

Query: 10  GVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
           G+++VA  L +       DL+ +   +       E   L+ ++   A++G     +  + 
Sbjct: 56  GLELVATELSAAALKE-LDLLVVCGGLRTPLKYPE---LDRLLNDCAAHGMALGGLW-NG 110

Query: 70  AVALGSWGLLKGLKATCYPSFMEQLAPAC-AATVESRV-QQDGKVVTTRGPGTTMEFAVA 127
           A  LG  G+L     + +P     L+       +       D   ++   P   ME  + 
Sbjct: 111 AWFLGRAGVLDDYGCSIHPEQRASLSERSPQTRITPASFTLDRDRLSAASPNGAMELMLG 170

Query: 128 LVEQLYRKGKADEVS 142
           LV +LY  G A+ V 
Sbjct: 171 LVRRLYGDGLAEGVE 185

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A Length = 243

 Score = 44.2 bits (104), Expect = 3e-06
 Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 33/146 (22%)

Query: 19  VSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVAL----- 73
             +     + +           +  ++K L+ I  +  +NG + AAVC  PA+       
Sbjct: 91  PKEVNADDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGLTDK 150

Query: 74  --GSWGLLKGLKATCYPSFMEQLAPACAA-------TVESR------------------V 106
             G   L++G   T +    E +    +        TVE                     
Sbjct: 151 KTGRP-LIEGKSITGFTDVGETILGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYS 209

Query: 107 QQDGKVVTTRGPGTTMEFAVALVEQL 132
             DG++VT   P +    AV  ++ L
Sbjct: 210 ITDGRLVTGVNPASAHSTAVRSIDAL 235

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A* Length = 244

 Score = 43.1 bits (101), Expect = 7e-06
 Identities = 22/145 (15%), Positives = 45/145 (31%), Gaps = 31/145 (21%)

Query: 19  VSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVAL----- 73
            ++   + + +           +  ++K L+ I  K  +NG + AA+C  P +       
Sbjct: 91  ANEVNASDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGLIDI 150

Query: 74  -GSWGLLKGLKATCYPSFMEQLAP------------------ACAATVESR-------VQ 107
             +  L++G   T +P   E                         A   +          
Sbjct: 151 KTTRPLIEGKAITGFPLEGEIALGVDDILRSRKLTTVERVANKNGAKYLAPIHPWDDYSI 210

Query: 108 QDGKVVTTRGPGTTMEFAVALVEQL 132
            DGK+VT     ++    +  +  L
Sbjct: 211 TDGKLVTGVNANSSYSTTIRAINAL 235

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus} Length = 209

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 20/126 (15%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 10  GVKIVADALVSDCRDAVFDLIALP-VCMPDATNLKESKVLETIVKKQASNGRLYAAVCAS 68
           G+ +   A          +++ +  +  P  +  K    L   +++    G    A+  +
Sbjct: 60  GISVQPTAQWQSFDFT--NILIIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAID-T 116

Query: 69  PAVALGSWGLLKGLKATCYPSFMEQLAPAC-AATVESRV--QQDGKVVTTRGPGTTMEFA 125
               +   GLL+  KA  +  F            + +      DG V  + GP +     
Sbjct: 117 GIFVVAKAGLLQQNKAVMHSYFAHLFGELFPEIMLMTEQKALIDGNVYLSSGPYSHSSVM 176

Query: 126 VALVEQ 131
           + +VE+
Sbjct: 177 LEIVEE 182

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 40.3 bits (93), Expect = 4e-05
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 21/50 (42%)

Query: 43 KESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSFME 92
          K++      +KK  ++ +LYA   A PA+A         +KAT     ME
Sbjct: 19 KQA------LKKLQASLKLYADDSA-PALA---------IKAT-----ME 47

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis} Length = 242

 Score = 40.8 bits (95), Expect = 5e-05
 Identities = 17/113 (15%), Positives = 36/113 (31%), Gaps = 16/113 (14%)

Query: 19  VSDCRDAVFDLIALP-----------VCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67
           +   R   FD++ +P           +   D  N       +  V++  +  +   AVC 
Sbjct: 100 IEQIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCI 159

Query: 68  SPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQ-----DGKVVTT 115
           SPAV +     +  +K T        +       V+    +       ++ + 
Sbjct: 160 SPAVVVALLKDIAKVKVTIGEDSNGLIDKMGGVHVDCPTIKSVKDDVNRIFSC 212

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} Length = 247

 Score = 37.7 bits (87), Expect = 5e-04
 Identities = 22/145 (15%), Positives = 43/145 (29%), Gaps = 32/145 (22%)

Query: 19  VSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVAL----- 73
             D     + L+ +        +   +K L+ I +     G +  AVC  PA+       
Sbjct: 98  AGDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGIHDE 157

Query: 74  -GSWGLLKGLKATCYPSFMEQLAPACAA-------TVESR------------------VQ 107
            G   ++K    T + +  E +             T+                      +
Sbjct: 158 NGDS-VIKDKTVTGFTTKGEIMIKVIDKMREDHLHTIADMAQTANAEYVPPEDPWDDFCK 216

Query: 108 QDGKVVTTRGPGTTMEFAVALVEQL 132
            DG++VT   P +    A   ++  
Sbjct: 217 VDGRIVTGANPQSATNTARDTIKVY 241

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	145
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	100.0
4hcj_A	177	THIJ/PFPI domain protein; structural genomics, PSI	100.0
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	100.0
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	100.0
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	100.0
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	100.0
3gra_A	202	Transcriptional regulator, ARAC family; transcript	100.0
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	100.0
3er6_A	209	Putative transcriptional regulator protein; struct	100.0
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	100.0
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	100.0
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	100.0
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	100.0
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	100.0
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	100.0
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	100.0
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	100.0
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	100.0
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	100.0
2fex_A	188	Conserved hypothetical protein; structural genomic	99.98
1u9c_A	224	APC35852; structural genomics, protein structure i	99.97
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	99.97
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	99.96
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	99.96
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	99.96
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	99.96
3n7t_A	247	Macrophage binding protein; seattle structural gen	99.96
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	99.94
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	99.93
1sy7_A	715	Catalase 1; heme oxidation, singlet oxygen, oxidor	99.76
3ttv_A	753	Catalase HPII; heme orientation, oxidoreductase; H	99.53
2iuf_A	688	Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen	99.28
3ej6_A	688	Catalase-3; heme, hydrogen iron, metal-binding, ox	99.1
3d54_D	213	Phosphoribosylformylglycinamidine synthase 1; alph	98.67
1q7r_A	219	Predicted amidotransferase; structural genomics, Y	98.09
2nv0_A	196	Glutamine amidotransferase subunit PDXT; 3-layer(A	98.07
2iss_D	208	Glutamine amidotransferase subunit PDXT; (beta/alp	97.97
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	97.83
2ywd_A	191	Glutamine amidotransferase subunit PDXT; pyridoxin	97.83
2abw_A	227	PDX2 protein, glutaminase; PLP-synthase, vitamin B	97.74
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	97.72
1ka9_H	200	Imidazole glycerol phosphtate synthase; riken stru	97.69
3m3p_A	250	Glutamine amido transferase; structural genomics,	97.61
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	97.59
4gud_A	211	Imidazole glycerol phosphate synthase subunit His;	97.43
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	97.41
3ugj_A	1303	Phosphoribosylformylglycinamidine synthase; amidot	97.4
1gpw_B	201	Amidotransferase HISH; lyase/transferase, complex	97.4
1a9x_B	379	Carbamoyl phosphate synthetase (small chain); amid	97.36
2v4u_A	289	CTP synthase 2; pyrimidine biosynthesis, glutamine	97.28
2a9v_A	212	GMP synthase; structural genomics, joint center fo	97.19
3fij_A	254	LIN1909 protein; 11172J, uncharacterized protein,	97.04
2ywj_A	186	Glutamine amidotransferase subunit PDXT; uncharact	97.0
3uow_A	556	GMP synthetase; structural genomics consortium, SG	96.87
3l4e_A	206	Uncharacterized peptidase LMO0363; hypothetical pr	96.83
1fy2_A	229	Aspartyl dipeptidase; serine protease, catalytic t	96.79
2w7t_A	273	CTP synthetase, putative cytidine triphosphate syn	96.65
2h2w_A	312	Homoserine O-succinyltransferase; TM0881, (EC 2.3.	96.6
2vdj_A	301	Homoserine O-succinyltransferase; methionine biosy	96.34
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	96.28
3r75_A	645	Anthranilate/para-aminobenzoate synthases compone;	96.26
3nva_A	535	CTP synthase; rossman fold, nucleotide binding, LI	96.2
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	96.11
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	96.02
2vpi_A	218	GMP synthase; guanine monophosphate synthetase, ph	95.87
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	95.68
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	95.17
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	93.76
3en0_A	291	Cyanophycinase; serine protease, beta peptide spec	93.12
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	92.09
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	91.93
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	91.5
2r47_A	157	Uncharacterized protein MTH_862; unknown function,	87.85

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}

Probab=100.00  E-value=6.3e-38  Score=220.22  Aligned_cols=141  Identities=34%  Similarity=0.567  Sum_probs=130.2

Q ss_pred             CeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCCc
Q 045076            3 LRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGL   82 (145)
Q Consensus         3 ~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~   82 (145)
                      ++|++++|+.+.+|..++++++++||+||||||..+...+..++.+++||+++++++++|+++|+|+ ++|+++|+|+||
T Consensus        44 ~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~-~~La~aGlL~g~  122 (190)
T 4e08_A           44 EAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAP-TVLAKHGVASGK  122 (190)
T ss_dssp             SCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTH-HHHHHTTCSTTC
T ss_pred             cceecCCCcEEECCCCHHHCCcccCCEEEECCCChHHHHhhhCHHHHHHHHHHHHCCCEEEEECHHH-HHHHHCCCcCCC
Confidence            6899999999999999999887789999999995455667789999999999999999999999975 689999999999


Q ss_pred             eeecCcchhhhhcccCceecc-ccEEEeCCeEecCCcchHHHHHHHHHHHhcChhHHHHHhCCC
Q 045076           83 KATCYPSFMEQLAPACAATVE-SRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL  145 (145)
Q Consensus        83 ~~t~~~~~~~~l~~~~~~~~~-~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~~~  145 (145)
                      ++|+||...+.|++ ++++++ +.+|+|||+|||+|+.+++||++++|++++|++.|+++++.|
T Consensus       123 ~~T~~~~~~~~l~~-~~~~~~~~~~v~dg~iiTs~g~~a~~d~al~li~~~~g~~~a~~va~~l  185 (190)
T 4e08_A          123 SLTSYPSMKPQLVN-NYSYVDDKTVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQEVAKGL  185 (190)
T ss_dssp             EECCCGGGGGGSSS-SSEECSSCSEEEETTEEEECSGGGHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             eEEeCcCHHHHHhc-CCcccCCCcEEEECCEEECCChHHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence            99999999999977 488884 889999999999999999999999999999999999998754

>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}

Probab=100.00  E-value=1.7e-37  Score=215.85  Aligned_cols=132  Identities=20%  Similarity=0.236  Sum_probs=124.3

Q ss_pred             CCCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076            1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK   80 (145)
Q Consensus         1 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~   80 (145)
                      ++++|++++|+++.+|..++++++++||+|+||||+ ++..+..++.+.+||+++++++++|++||+|+ ++|+++|+|+
T Consensus        44 ~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~-g~~~l~~~~~~~~~l~~~~~~~k~iaaIC~g~-~~La~aGlL~  121 (177)
T 4hcj_A           44 FIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGI-GCITLWDDWRTQGLAKLFLDNQKIVAGIGSGV-VIMANAKILE  121 (177)
T ss_dssp             SSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCSG-GGGGGTTCHHHHHHHHHHHHTTCEEEEETTHH-HHHHHTTCCT
T ss_pred             CCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCCc-cHHHHhhCHHHHHHHHHHHHhCCEEEEecccH-HHHHHCCCCC
Confidence            357899999999999999999998899999999995 67788899999999999999999999999976 5899999999


Q ss_pred             CceeecCcchhhhhcccCceeccccEEEeCCeEecCCcchHHHHHHHHHHHhcC
Q 045076           81 GLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYR  134 (145)
Q Consensus        81 g~~~t~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g  134 (145)
                      ||++|+||..++++++.|+.|+++++|+|||+||++|+.++++|++++|+.+.+
T Consensus       122 gr~~T~~~~~~~~l~~~ga~~~~~~vV~Dg~liTs~g~~~~~~~a~~lve~L~s  175 (177)
T 4hcj_A          122 EINVTCLSADESHVRHGNANIMSENVVVSGNIVTANGPTSSKDFANAVVGVLNS  175 (177)
T ss_dssp             TCEECCCGGGHHHHHHTTCEECSSSEEEETTEEEECSGGGHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCHHHHHHhCCCEEecCCEEEECCEEECCCHHHHHHHHHHHHHHHhc
Confidence            999999999999998888899999999999999999999999999999999865

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A

Probab=100.00  E-value=1.2e-37  Score=219.57  Aligned_cols=142  Identities=23%  Similarity=0.302  Sum_probs=129.8

Q ss_pred             CCeeeecCCCEEeccccccCCCC-----CCccEEEEcCCccChhccccChHHHHHHHHHHHC-CCeEEEEcchhHHHhhh
Q 045076            2 QLRVDACHGVKIVADALVSDCRD-----AVFDLIALPVCMPDATNLKESKVLETIVKKQASN-GRLYAAVCASPAVALGS   75 (145)
Q Consensus         2 ~~~v~~~~G~~i~~d~~~~~~~~-----~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~-~~~v~aic~g~~~~La~   75 (145)
                      +.+|++++|+++.+|..+++++.     ++||+||||||.+++..+..++.+.+||++++++ +++|+++|+|+  +|+.
T Consensus        44 ~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPGG~~~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~--~l~~  121 (194)
T 4gdh_A           44 DRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGT--LTAK  121 (194)
T ss_dssp             TCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECCCHHHHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGG--HHHH
T ss_pred             CceEecCCCceeeccccHhhCCccccccccCCEEEECCCchhHhHhhhCHHHHHHHHHhhhcCCceEEeecccc--cchh
Confidence            35789999999999999998864     3599999999976778888999999999999865 79999999974  5888


Q ss_pred             ccccCCceeecCcchhhhhcccCceeccccEEEeCCeEecCCcchHHHHHHHHHHHhcChhHHHHHhCCC
Q 045076           76 WGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL  145 (145)
Q Consensus        76 agll~g~~~t~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~~~  145 (145)
                      +|+|+||++|+||...+++++.++.|+++++|+|||+|||+|+.++++|+++||++++|++.|++|++.|
T Consensus       122 aglL~gr~~T~~~~~~~~l~~~g~~~~d~~vV~Dg~iiTs~g~~~~~d~al~lve~l~G~~~a~~va~~l  191 (194)
T 4gdh_A          122 TSGLPNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVASKDKYNAVYKSL  191 (194)
T ss_dssp             HTTCCCSEECCCGGGHHHHHHTTCEECCSSEEEETTEEEECSGGGHHHHHHHHHHHHSCHHHHHHHHHHT
T ss_pred             hceecCCceEecCcHHHHHHhcCCeeecceEEEcCCEEECCCHhHHHHHHHHHHHHHcCHHHHHHHHhhc
Confidence            9999999999999999999888889999999999999999999999999999999999999999999865

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A

Probab=100.00  E-value=5.6e-37  Score=221.44  Aligned_cols=141  Identities=30%  Similarity=0.438  Sum_probs=129.4

Q ss_pred             CCCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076            1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK   80 (145)
Q Consensus         1 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~   80 (145)
                      ++++|++++|+.+.+|..+++++  +||+||||||. +...+..++.+++||+++++++++|++||+| .++|+++|||+
T Consensus        42 ~~~~V~~~~G~~v~~d~~l~~~~--~~D~livpGG~-g~~~~~~~~~l~~~lr~~~~~g~~v~aiC~G-~~~La~aGLL~  117 (231)
T 3noq_A           42 EPGPVVASSGLVLQATTSFADCP--PLDVICIPGGT-GVGALMEDPQALAFIRQQAARARYVTSVSTG-SLVLGAAGLLQ  117 (231)
T ss_dssp             SSEEEECTTSCEEEECEETTTCC--CCSEEEECCST-THHHHTTCHHHHHHHHHHHTTCSEEEEETTH-HHHHHHTTTTT
T ss_pred             CCCcEEcCCCCEEecccChhHCC--cCCEEEECCCC-ChhhhccCHHHHHHHHHHHhcCCEEEEECHH-HHHHHHcCCCC
Confidence            46789999999999999999875  79999999994 6767788999999999999999999999997 57899999999


Q ss_pred             CceeecCcchhhhhcccCceeccccEEEeCCeEecCCcchHHHHHHHHHHHhcChhHHHHHhCCC
Q 045076           81 GLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL  145 (145)
Q Consensus        81 g~~~t~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~~~  145 (145)
                      ||++|+||.+.+.+++.+..++++++|+|||+|||+|+.+++||+++||++++|++.|+++++.|
T Consensus       118 Gr~aTthw~~~~~l~~~~~~~~~~~vV~Dg~iiTs~G~~a~~d~aL~li~~~~G~~~A~~va~~l  182 (231)
T 3noq_A          118 GKRATTHWAYHELLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRVQLQL  182 (231)
T ss_dssp             TCEECCCGGGGGGTGGGTCEECCSSEEEETTEEEECSTTHHHHHHHHHHHHHSCHHHHHHHHHHT
T ss_pred             CceeeecHhHHHHHHhCCCeeeCCcEEEeCCEEECCCHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence            99999999999999766666778899999999999999999999999999999999999998654

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}

Probab=100.00  E-value=6.5e-37  Score=223.60  Aligned_cols=143  Identities=23%  Similarity=0.286  Sum_probs=130.1

Q ss_pred             CCCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076            1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK   80 (145)
Q Consensus         1 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~   80 (145)
                      ++++|++++|+.+.+|..+++++. .||+||||||..+...+..++.+++||+++++++++|++||+| .++|+++|||+
T Consensus        60 ~~~~V~~~~G~~i~~d~~l~~~~~-~yD~liVPGG~~g~~~l~~~~~l~~~Lr~~~~~gk~IaaICtG-~~lLa~AGLL~  137 (253)
T 3ewn_A           60 SLDPVTSDAGLAIVPTATFGTCPR-DLTVLFAPGGTDGTLAAASDAETLAFMADRGARAKYITSVCSG-SLILGAAGLLK  137 (253)
T ss_dssp             SSSCEECTTSCEECCSEETTTSCS-SCSEEEECCBSHHHHHHTTCHHHHHHHHHHHTTCSEEEEETTH-HHHHHHTTCCT
T ss_pred             CCCeEEcCCCCEEeCCcCHHHcCC-CCCEEEECCCccchhhhccCHHHHHHHHHHHHcCCEEEEEChH-HHHHHHcCCCC
Confidence            467999999999999999998864 7999999999525566778999999999999999999999997 57899999999


Q ss_pred             CceeecCcchhhhhcccCceeccccEEEeCCeEecCCcchHHHHHHHHHHHhcChhHHHHHhCCC
Q 045076           81 GLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL  145 (145)
Q Consensus        81 g~~~t~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~~~  145 (145)
                      ||++|+||...+.|++.+..++++++|+|||+|||+|+.+++||+++||++++|++.|+++++.|
T Consensus       138 Gr~aTthw~~~~~l~~~~~~~~~~~vV~Dg~iiTs~G~~a~idlaL~lv~~l~G~~~A~~va~~l  202 (253)
T 3ewn_A          138 GYKATSHWSCRDALAGFGAIPTEARVVRDRNRITGAGVTAGLDFGLSMVAELRDQTYAECAQLMS  202 (253)
T ss_dssp             TCEECCCTTTGGGGGGGTCEECCSSEEEETTEEEECSTTHHHHHHHHHHHHHSCHHHHHHHHHHT
T ss_pred             CCEEecCHHHHHHHHhCCCeeeCCcEEEECCEEECCCHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence            99999999999999866666778899999999999999999999999999999999999998754

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0

Probab=100.00  E-value=7.9e-37  Score=217.50  Aligned_cols=141  Identities=30%  Similarity=0.554  Sum_probs=127.9

Q ss_pred             CeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCCc
Q 045076            3 LRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGL   82 (145)
Q Consensus         3 ~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~   82 (145)
                      ++|++++|+.+.+|..++++++++||+||||||.+++..+..++.+++||+++++++++|++||+|++++|+++|||+||
T Consensus        48 ~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~aGlL~g~  127 (208)
T 3ot1_A           48 LQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGA  127 (208)
T ss_dssp             SEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTTTCSTTC
T ss_pred             cceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchHHHHHhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHCCccCCC
Confidence            69999999999999999998777999999999964566678899999999999999999999999753689999999999


Q ss_pred             eeecCcchhhhhcccCceeccccEEEe--CCeEecCCcchHHHHHHHHHHHhcChhHHHHHhCCC
Q 045076           83 KATCYPSFMEQLAPACAATVESRVQQD--GKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL  145 (145)
Q Consensus        83 ~~t~~~~~~~~l~~~~~~~~~~~~v~d--g~iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~~~  145 (145)
                      ++|+||...+.+.+  .+|.++++++|  ||+|||+|+.+++||++++|++++|++.|++|++.|
T Consensus       128 ~~T~~~~~~~~l~~--~~~~~~~vv~d~dg~iiTs~g~~a~~d~al~lv~~l~G~~~a~~va~~l  190 (208)
T 3ot1_A          128 RMTCHPNFFDHIPS--ERLSRQRVCYYATQHLLTSQGPGTALEFALAMIALLAGVELAQHVAAPM  190 (208)
T ss_dssp             CBCCCGGGGGGSCT--TTBCCSSEEEEGGGTEEEECSGGGHHHHHHHHHHHHHCHHHHHHHHGGG
T ss_pred             EEEECccHHHHccC--CccccCcEEEeCCCCEEECCCHHHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence            99999999998833  67777788875  499999999999999999999999999999999865

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}

Probab=100.00  E-value=5.5e-37  Score=217.49  Aligned_cols=140  Identities=21%  Similarity=0.251  Sum_probs=124.9

Q ss_pred             CCCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076            1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK   80 (145)
Q Consensus         1 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~   80 (145)
                      ++++|++++|+++.+| .+++++.++||+||||||.. .... . +.+++||+++++++++|++||+| .++|+++|||+
T Consensus        47 ~~~~v~~~~G~~i~~d-~l~~~~~~~~D~livpGG~~-~~~~-~-~~l~~~l~~~~~~g~~iaaIC~G-~~~La~aGLL~  121 (202)
T 3gra_A           47 DGDRVLSDLGLELVAT-ELSAAALKELDLLVVCGGLR-TPLK-Y-PELDRLLNDCAAHGMALGGLWNG-AWFLGRAGVLD  121 (202)
T ss_dssp             SSSEEEBTTSCEEECE-ECCSGGGTTCSEEEEECCTT-CCSC-C-TTHHHHHHHHHHHTCEEEEETTH-HHHHHHHTCCT
T ss_pred             CCCceEcCCCCEEECC-CcccccCCCCCEEEEeCCCc-hhhc-c-HHHHHHHHHHHhhCCEEEEECHH-HHHHHHcCCcC
Confidence            4679999999999999 99986666899999999963 3333 4 89999999999999999999997 57899999999


Q ss_pred             CceeecCcchhhhhccc--CceeccccEEEeCCeEecCCcchHHHHHHHHHHHhcChhHHHHHhCCC
Q 045076           81 GLKATCYPSFMEQLAPA--CAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL  145 (145)
Q Consensus        81 g~~~t~~~~~~~~l~~~--~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~~~  145 (145)
                      ||++|+||.+.+.|++.  +..+.++.+|+|||+|||+|+.+++||+++||++++|++.|+++++.|
T Consensus       122 gr~aTth~~~~~~l~~~~p~~~~~~~~~v~dg~iiTs~G~~a~~dlal~li~~~~G~~~A~~va~~l  188 (202)
T 3gra_A          122 DYGCSIHPEQRASLSERSPQTRITPASFTLDRDRLSAASPNGAMELMLGLVRRLYGDGLAEGVEEIL  188 (202)
T ss_dssp             TEEECCCGGGHHHHHHHCTTEEECSSSEEEETTEEEESSHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CCcEEeChhHHHHHHHHCCCCEecCCeEEEeCCEEECCCHHHHHHHHHHHHHHHhCHHHHHHHHHHh
Confidence            99999999999988765  345677899999999999999999999999999999999999998754

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...

Probab=100.00  E-value=1.6e-36  Score=214.19  Aligned_cols=142  Identities=36%  Similarity=0.519  Sum_probs=128.5

Q ss_pred             CeeeecCCCEEeccccccCC-CCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCC
Q 045076            3 LRVDACHGVKIVADALVSDC-RDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKG   81 (145)
Q Consensus         3 ~~v~~~~G~~i~~d~~~~~~-~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g   81 (145)
                      .+|++++|+.+.+|..++++ ++.+||+||||||..+...+..++.+++||+++++++++|++||+|+ ++|+++|+|+|
T Consensus        42 ~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~~~l~~~~~~~~~l~~~~~~gk~i~aiC~G~-~~La~aGll~G  120 (197)
T 2rk3_A           42 DPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGP-TALLAHEIGFG  120 (197)
T ss_dssp             SCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTH-HHHHHTTCSTT
T ss_pred             CccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhHHHhhhCHHHHHHHHHHHHcCCEEEEECHHH-HHHHHCCCCCC
Confidence            48999999999999999987 66699999999995345567789999999999999999999999975 68999999999


Q ss_pred             ceeecCcchhhhhcccC-ceeccccEEEeCCeEecCCcchHHHHHHHHHHHhcChhHHHHHhCCC
Q 045076           82 LKATCYPSFMEQLAPAC-AATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL  145 (145)
Q Consensus        82 ~~~t~~~~~~~~l~~~~-~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~~~  145 (145)
                      |++|+||...+.+++.+ +.+.++.+++|||+|||+|+.+++||++++|+++.|++.|+++++.|
T Consensus       121 ~~~T~~~~~~~~l~~~~~~~~~~~~~v~Dg~iiTs~g~~a~~d~al~li~~l~g~~~a~~va~~~  185 (197)
T 2rk3_A          121 SKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPL  185 (197)
T ss_dssp             CEECCCGGGHHHHTTTSCSEECCCSEEEETTEEEECSGGGHHHHHHHHHHHHHCHHHHHHHHGGG
T ss_pred             CEEEeCCcHHHHHhhcCCceeCCCCEEEeCCEEECCCHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            99999999999997653 34678899999999999999999999999999999999999999864

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}

Probab=100.00  E-value=2.5e-36  Score=215.07  Aligned_cols=141  Identities=16%  Similarity=0.154  Sum_probs=125.5

Q ss_pred             CCCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhc--cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccc
Q 045076            1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATN--LKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGL   78 (145)
Q Consensus         1 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~--~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agl   78 (145)
                      ++++|++++|+++.+|..+++++  +||+||||||. ++..  +..++.+++||+++++++++|++||+| .++|+++|+
T Consensus        51 ~~~~v~~~~G~~v~~d~~~~~~~--~~D~livpGg~-~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G-~~~La~aGL  126 (209)
T 3er6_A           51 NNRPLIGRGGISVQPTAQWQSFD--FTNILIIGSIG-DPLESLDKIDPALFDWIRELHLKGSKIVAIDTG-IFVVAKAGL  126 (209)
T ss_dssp             TSSCEEETTTEEEECSSCGGGCS--CCSEEEECCCS-CHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTH-HHHHHHHTC
T ss_pred             CCCceecCCCeEEeCCcCccccC--CCCEEEECCCC-CchhhhccCCHHHHHHHHHHHhcCCEEEEEcHH-HHHHHHcCC
Confidence            46789999999999999999875  89999999995 4433  367999999999999999999999997 578999999


Q ss_pred             cCCceeecCcchhhhhccc--Cceecc-ccEEEeCCeEecCCcchHHHHHHHHHHHhcChhHHHHHhCCC
Q 045076           79 LKGLKATCYPSFMEQLAPA--CAATVE-SRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL  145 (145)
Q Consensus        79 l~g~~~t~~~~~~~~l~~~--~~~~~~-~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~~~  145 (145)
                      |+||++|+||.+.+.|++.  +..+.+ +.+|+|||+|||+|+.+++||+++||++++|++.|+++++.|
T Consensus       127 L~gr~aTth~~~~~~l~~~~p~~~~~~~~~~v~Dg~iiTs~G~~a~~dlal~li~~~~G~~~A~~va~~l  196 (209)
T 3er6_A          127 LQQNKAVMHSYFAHLFGELFPEIMLMTEQKALIDGNVYLSSGPYSHSSVMLEIVEEYFGKHTRNLGNQFL  196 (209)
T ss_dssp             CSSCEECCCHHHHHHHHHHCTTSEECTTCSEEEETTEEEECCSSCCHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred             CCCCeeEECHHHHHHHHHHCCCcEEecCCEEEEeCCEEECCcHHHHHHHHHHHHHHHhCHHHHHHHHHHh
Confidence            9999999999999999765  244554 469999999999999999999999999999999999999765

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}

Probab=100.00  E-value=1.6e-36  Score=216.45  Aligned_cols=141  Identities=18%  Similarity=0.288  Sum_probs=127.1

Q ss_pred             CCCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076            1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK   80 (145)
Q Consensus         1 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~   80 (145)
                      ++++|++++|+.+.+|..+++.+  +||+||||||. +...+..++.+++||+++++++++|++||+| .++|+++|||+
T Consensus        42 ~~~~V~~~~G~~v~~d~~~~~~~--~~D~livpGG~-~~~~~~~~~~~~~~l~~~~~~~k~iaaiC~G-~~~La~aGLL~  117 (211)
T 3mgk_A           42 DGGLVESSQKVRVETSLYTRDEN--IEKILFVPGGS-GTREKVNDDNFINFIGNMVKESKYIISVCTG-SALLSKAGILN  117 (211)
T ss_dssp             SCEEEECTTCCEEEEBCCCCCSS--SEEEEEECCST-HHHHHTTCHHHHHHHHHHHHHCSEEEECTTH-HHHHHHTTTTT
T ss_pred             CCCeEecCCCcEEEeccchhhCC--CCCEEEECCCc-chhhhcCCHHHHHHHHHHHHcCCEEEEEchH-HHHHHhcCCcC
Confidence            35789999999999999998876  69999999995 5666778999999999999999999999997 56899999999


Q ss_pred             CceeecCcchhhhhcccC--ceec-cccEEEeCCeEecCCcchHHHHHHHHHHHhcChhHHHHHhCCC
Q 045076           81 GLKATCYPSFMEQLAPAC--AATV-ESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL  145 (145)
Q Consensus        81 g~~~t~~~~~~~~l~~~~--~~~~-~~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~~~  145 (145)
                      ||++|+||...+.|++.+  ..+. ++.+|+|||+|||+|+.+++||+++||++++|++.|++|++.|
T Consensus       118 Gr~~Tth~~~~~~l~~~~p~~~~~~~~~~v~Dg~iiTs~G~~a~~dlal~lv~~~~G~~~A~~va~~l  185 (211)
T 3mgk_A          118 GKRATTNKRSFKWVTEQNEDVLWVKEARWVKDGNIYTSSGVSAGIDMTLGFIEDLIGKEKALEISRSI  185 (211)
T ss_dssp             TSEECCCSTTHHHHHTTCTTSEECSSCSEEEETTEEEECSHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CCeEeeChhHHHHHHHHCCCcEEecCCeEEEeCCEEECCCHHHHHHHHHHHHHHHhCHHHHHHHHHhc
Confidence            999999999999998762  3454 6789999999999999999999999999999999999998753

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2

Probab=100.00  E-value=6.7e-36  Score=212.25  Aligned_cols=140  Identities=31%  Similarity=0.555  Sum_probs=128.1

Q ss_pred             eeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCCce
Q 045076            4 RVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLK   83 (145)
Q Consensus         4 ~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~~   83 (145)
                      +|++++|+.+.+|..++++++++||+||||||..++..+..++.+.+||+++++++++|++||+|++++|+++|+|+||+
T Consensus        44 ~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~aGlL~G~~  123 (205)
T 2ab0_A           44 AITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGN  123 (205)
T ss_dssp             EEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTTTSSSSSC
T ss_pred             eeecCCCeEEecCCCHHHCCcccCCEEEECCCcccHHHhccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHCCccCCCe
Confidence            89999999999999999887778999999999645666778999999999999999999999997636899999999999


Q ss_pred             eecCcchhhhhcccCceeccccEEEeCCe--EecCCcchHHHHHHHHHHHhcChhHHHHHhCCC
Q 045076           84 ATCYPSFMEQLAPACAATVESRVQQDGKV--VTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL  145 (145)
Q Consensus        84 ~t~~~~~~~~l~~~~~~~~~~~~v~dg~i--iT~~g~~~~~~~~l~li~~~~g~~~a~~va~~~  145 (145)
                      +|+||.+.+.+.+  ..+.++++++|||+  |||+|+.++++|++++|+++.|++.|+++++.|
T Consensus       124 ~T~~~~~~~~~~~--~~~~~~~vv~Dg~i~viTs~g~~s~~d~al~li~~l~g~~~a~~va~~l  185 (205)
T 2ab0_A          124 MTGFPTLKDKIPA--EQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQL  185 (205)
T ss_dssp             BCCCGGGGGGSCT--TTBCCCSEEEETTTTEEEECSGGGHHHHHHHHHHHHTCHHHHHHHHTTT
T ss_pred             EEeCccHHHHccC--CEEecCCEEEeCCcCeEECcChhhHHHHHHHHHHHhcChHHHHHHHHhc
Confidence            9999998888854  56778889999999  999999999999999999999999999999876

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}

Probab=100.00  E-value=7.7e-35  Score=210.70  Aligned_cols=140  Identities=19%  Similarity=0.263  Sum_probs=125.7

Q ss_pred             CCCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCC-eEEEEcchhHHHhhhcccc
Q 045076            1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGR-LYAAVCASPAVALGSWGLL   79 (145)
Q Consensus         1 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~-~v~aic~g~~~~La~agll   79 (145)
                      ++++|++++|+.+.+|..+++.  .+||+||||||+.+...+..++.+++||  ++.+++ +|++||+|+ ++|+++|+|
T Consensus        57 ~~~~V~ss~G~~v~~d~~l~~~--~~~D~liVPGG~~g~~~l~~~~~l~~~L--~~~~~~~~IaaIC~G~-~lLa~AGLL  131 (236)
T 3bhn_A           57 TKPEHHSQLGMTVKTDGHVSEV--KEQDVVLITSGYRGIPAALQDENFMSAL--KLDPSRQLIGSICAGS-FVLHELGLL  131 (236)
T ss_dssp             SSSEEEBTTCCEEECSEEGGGG--GGCSEEEECCCTTHHHHHHTCHHHHHHC--CCCTTTCEEEEETTHH-HHHHHTTTT
T ss_pred             CCCcEEecCCcEEecCcccccc--cCCCEEEEcCCccCHhhhccCHHHHHHH--HhCCCCCEEEEEcHHH-HHHHHcCCC
Confidence            4679999999999999999874  4899999999943455577899999999  555666 999999975 689999999


Q ss_pred             CCceeecCcchhhhhcccCceeccccEEEeCCeEecCCcchHHHHHHHHHHHhcChhHHHHHhCCC
Q 045076           80 KGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL  145 (145)
Q Consensus        80 ~g~~~t~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~~~  145 (145)
                      +||++|+||...+.|++.+..+.++.+|+|||+|||+|+.+++||++++|++++|++.|+++++.|
T Consensus       132 ~Gr~aTth~~~~~~l~~~~p~~~~~~vV~Dg~iiTs~G~~a~~dlal~lIe~l~G~~~A~~va~~l  197 (236)
T 3bhn_A          132 KGKKLTTNPDAKAVLQGMGGDVQDLPLVIEGNIATAGGCLSLLYLVGWLAERLFDSVKRKQIQNQL  197 (236)
T ss_dssp             TTCEECCCGGGHHHHHHTTCEECSSSEEEETTEEEECSGGGHHHHHHHHHHHHSCHHHHHHHHTTT
T ss_pred             CCCEEECCHHHHHHHHHhCCccCCCcEEEeCCEEECCCHHHHHHHHHHHHHHhcCHHHHHHHHHhc
Confidence            999999999999999887667788899999999999999999999999999999999999999876

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}

Probab=100.00  E-value=3.1e-35  Score=206.28  Aligned_cols=137  Identities=25%  Similarity=0.323  Sum_probs=123.0

Q ss_pred             CCeeee-----cCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076            2 QLRVDA-----CHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus         2 ~~~v~~-----~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      +++|++     ++|+.+.+|..++++++.+||+||||||..++..+..++.+++||+++++++++|+++|+|+ ++|+++
T Consensus        46 ~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~-~~La~a  124 (190)
T 2vrn_A           46 PGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGP-WSLSET  124 (190)
T ss_dssp             SSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCTHHHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTT-HHHHHT
T ss_pred             CCccccccccccCCcEEeCCCChhhCChhhCCEEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEECHhH-HHHHhC
Confidence            567877     78999999999999876789999999995456666789999999999999999999999975 589999


Q ss_pred             cccCCceeecCcchhhhhcccCceeccccEEEeCCeEecCCcchHHHHHHHHHHHh-cChhHHH
Q 045076           77 GLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQL-YRKGKAD  139 (145)
Q Consensus        77 gll~g~~~t~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~-~g~~~a~  139 (145)
                      |||+||++|+||.+.+.|++.+..++++++++|||+|||+|+.++++|++++|+++ .|++.|+
T Consensus       125 GlL~gr~~Tt~~~~~~~l~~~~~~~~~~~~v~Dg~iiTs~g~~s~~~~~l~li~~l~~g~~~a~  188 (190)
T 2vrn_A          125 GIAQGLKMTSWSSLKRELTLAGAQWVDEECVTDKGVVTSRKPDDLPAFNKKIVEEFAEGDHSSR  188 (190)
T ss_dssp             TTTTTCEECCCGGGHHHHHHTTCEECCCSCEEETTEEECSSGGGHHHHHHHHHHHHHHCCCGGG
T ss_pred             cccCCcEEecCccHHHHHHHcCCeEECCCEEEcCCEEEcCChhhHHHHHHHHHHHHhccccccc
Confidence            99999999999999999988877888888888999999999999999999999999 8988775

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A

Probab=100.00  E-value=6.7e-35  Score=200.98  Aligned_cols=130  Identities=22%  Similarity=0.326  Sum_probs=119.8

Q ss_pred             CCCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076            1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK   80 (145)
Q Consensus         1 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~   80 (145)
                      ++++|++++|+.+.+|..++++++.+||+|+||||. ++..+..++.+.+||+++++++++|+++|+|+ ++|+++|+|+
T Consensus        38 ~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~-~~~~~~~~~~l~~~l~~~~~~~k~i~aiC~G~-~~La~aGlL~  115 (168)
T 3l18_A           38 QRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGK-APEIVRLNEKAVMITRRMFEDDKPVASICHGP-QILISAKVLK  115 (168)
T ss_dssp             SSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBS-HHHHHTTCHHHHHHHHHHHHTTCCEEEETTTH-HHHHHTTCCT
T ss_pred             CCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCc-CHHHhccCHHHHHHHHHHHHCCCEEEEECHhH-HHHHHCCccC
Confidence            357899999999999999999887789999999995 56667789999999999999999999999975 6899999999


Q ss_pred             CceeecCcchhhhhcccCceeccccEEEeCCeEecCCcchHHHHHHHHHHHh
Q 045076           81 GLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQL  132 (145)
Q Consensus        81 g~~~t~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~  132 (145)
                      ||++|+||...+.+++.+..++++.++.|||+|||+|+.++++|++++|+++
T Consensus       116 g~~~T~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~d~~l~li~~l  167 (168)
T 3l18_A          116 GRRGTSTITIRDDVINAGAEWIDAEVVVDGNWVSSRHPGDLYAWMREFVKLL  167 (168)
T ss_dssp             TCEECCCGGGHHHHHHTTCEECCSSCEEETTEEEECSGGGHHHHHHHHGGGC
T ss_pred             CCEEEeCccHHHHHHhCCCEEecCCEEEeCCEEEcCCHHHHHHHHHHHHHhh
Confidence            9999999999999988877788889999999999999999999999999875

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}

Probab=100.00  E-value=2.5e-34  Score=218.75  Aligned_cols=141  Identities=24%  Similarity=0.374  Sum_probs=130.3

Q ss_pred             CCe-eeecCCC-EEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhcccc
Q 045076            2 QLR-VDACHGV-KIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLL   79 (145)
Q Consensus         2 ~~~-v~~~~G~-~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll   79 (145)
                      +++ |++++|+ .+.+|..++++++.+||+||||||. ++..+..++.+.+||+++++++++|++||+|+ ++|+++|||
T Consensus        47 ~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~-g~~~l~~~~~l~~~Lr~~~~~gk~IaAIC~G~-~lLA~AGLL  124 (365)
T 3fse_A           47 MNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGM-APDKMRRNPNTVRFVQEAMEQGKLVAAVCHGP-QVLIEGDLL  124 (365)
T ss_dssp             SSCCEECTTSCCEECCSEETTTCCGGGCSEEEECCBT-HHHHHTTCHHHHHHHHHHHHTTCEEEEETTTH-HHHHHTTCC
T ss_pred             CCceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCc-chhhccCCHHHHHHHHHHHHCCCEEEEECHHH-HHHHHcCCc
Confidence            566 9999999 9999999999887789999999996 56667789999999999999999999999975 689999999


Q ss_pred             CCceeecCcchhhhhcccCceeccccEEEeCCeEecCCcchHHHHHHHHHHHhcChhHHHHHhCC
Q 045076           80 KGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGP  144 (145)
Q Consensus        80 ~g~~~t~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~~  144 (145)
                      +||++|+||.+.+.|++.+..++++++|+|||+|||+|+.++++|+++||+++.|.+.|+++++.
T Consensus       125 dGrraTthw~~~~~L~~~g~~~~d~~vV~DGniITs~G~~a~~d~al~lIe~L~g~~~A~~lA~~  189 (365)
T 3fse_A          125 RGKQATGFIAISKDMMNAGADYLDEALVVDGNLITSREPGDLAIFTTAILSRLGYGGKDAALPDE  189 (365)
T ss_dssp             TTCEECCCGGGHHHHHHTTCEECCSSCEEETTEEEECSGGGHHHHHHHHHHHTTCCCSSSCCCCT
T ss_pred             CCCEEEeChHHHHHHHhCCCEEecCcEEEECCEEECCCHHHHHHHHHHHHHHhcCchHHHHHhhh
Confidence            99999999999999988778888899999999999999999999999999999999998888764

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}

Probab=100.00  E-value=5.8e-34  Score=203.26  Aligned_cols=139  Identities=19%  Similarity=0.270  Sum_probs=122.0

Q ss_pred             CCCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076            1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK   80 (145)
Q Consensus         1 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~   80 (145)
                      ++++|++++|+.+.+|..++++++++||+||||||. +. .+..++.+++||+++++++++|++||+| .++|+++|+|+
T Consensus        49 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~livpGG~-~~-~~~~~~~l~~~l~~~~~~gk~iaaiC~G-~~~La~aGlL~  125 (212)
T 3efe_A           49 NKEMITTMGGLRIKPDISLDECTLESKDLLILPGGT-TW-SEEIHQPILERIGQALKIGTIVAAICGA-TDALANMGYLD  125 (212)
T ss_dssp             SSCCEECTTCCEECCSEEGGGCCCCTTCEEEECCCS-CT-TSGGGHHHHHHHHHHHHHTCEEEEETHH-HHHHHHTTTTS
T ss_pred             CCCeEEcCCCCEEecCcCHHHCCccCCCEEEECCCC-cc-ccccCHHHHHHHHHHHHCCCEEEEEcHH-HHHHHHcCCCC
Confidence            357899999999999999999988899999999995 43 3578899999999999999999999997 56899999999


Q ss_pred             CceeecCc-chhhhhccc--C-ceeccccEEEeCCeEecCCcchHHHHHHHHHHHhcChhHHHHHhCC
Q 045076           81 GLKATCYP-SFMEQLAPA--C-AATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGP  144 (145)
Q Consensus        81 g~~~t~~~-~~~~~l~~~--~-~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~~  144 (145)
                      ||++|+|| .+.+.+++.  + ..+.++.+|+|||+|||+|++ ++||+++||+++.|. .++++++.
T Consensus       126 Gr~~Tt~~~~~~~~l~~~~p~~~~~~~~~~V~Dg~iiTs~G~~-~~d~al~li~~l~g~-~a~~va~~  191 (212)
T 3efe_A          126 TRKHTSNNLEYTKMVCPNYKGEKFYELGPAVSDANLVTASGIA-PLEFAMEVLKKIDVF-TLDALHSW  191 (212)
T ss_dssp             SSCBCCSCHHHHHHHCTTCCCTTTBCCCSEEEETTEEEECTTC-HHHHHHHHHHHHTCS-CHHHHHHH
T ss_pred             CCeeecCCHHHHHHHHhhCCCccccCCCcEEEECCEEECCCch-HHHHHHHHHHHhcCC-CHHHHHHH
Confidence            99999996 777777654  1 235678999999999999985 999999999999997 88888764

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}

Probab=100.00  E-value=1.7e-33  Score=195.20  Aligned_cols=128  Identities=16%  Similarity=0.317  Sum_probs=116.1

Q ss_pred             CCeeeecCCCEEeccccccCC--CCCCccEEEEcCC--ccChhccc---cChHHHHHHHHHHHCCCeEEEEcchhHHHhh
Q 045076            2 QLRVDACHGVKIVADALVSDC--RDAVFDLIALPVC--MPDATNLK---ESKVLETIVKKQASNGRLYAAVCASPAVALG   74 (145)
Q Consensus         2 ~~~v~~~~G~~i~~d~~~~~~--~~~~~D~liipGG--~~~~~~~~---~~~~l~~~l~~~~~~~~~v~aic~g~~~~La   74 (145)
                      +++|++++|+.+.+|..++++  ++++||+||||||  .+++..+.   .++.+++||+++++++++|++||+|+ ++|+
T Consensus        40 ~~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~-~~La  118 (175)
T 3cne_A           40 TKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGA-MMFD  118 (175)
T ss_dssp             SSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHH-HHHH
T ss_pred             CCceecCCCeEEEeccCHHHhccCcccCCEEEECCCcCcccHHHHhhcccCHHHHHHHHHHHHCCCEEEEECHHH-HHHH
Confidence            368999999999999999987  6668999999999  54555555   78999999999999999999999975 6899


Q ss_pred             hccccCCceeecCcchhhhhcccCceeccccEEEeCCeEecCCcchHHHHHHHHHHHh
Q 045076           75 SWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQL  132 (145)
Q Consensus        75 ~agll~g~~~t~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~  132 (145)
                      ++|+|+||++|+||...+.+++  ..+.++.++.|||+|||+|+.+++||++++|+++
T Consensus       119 ~aGlL~G~~~T~~~~~~~~l~~--~~~~~~~~v~Dg~iiTs~g~~~~~d~al~li~~l  174 (175)
T 3cne_A          119 FTGITKGKKVAVHPLAKPAIQN--GIATDEKSEIDGNFFTAQDENTIWTMLPKVIEAL  174 (175)
T ss_dssp             HTTTTTTCEEECCGGGGGGCCS--SEEESSSEEEETTEEEESSGGGGGGTHHHHHHHH
T ss_pred             HCCCcCCCEEEeCccHHHHhhc--CEEeCCCEEEeCCEEeCCChHHHHHHHHHHHHHh
Confidence            9999999999999999999976  6778899999999999999999999999999986

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2

Probab=100.00  E-value=8.6e-33  Score=194.57  Aligned_cols=130  Identities=22%  Similarity=0.290  Sum_probs=118.8

Q ss_pred             CCe-eeecCCC-EEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhcccc
Q 045076            2 QLR-VDACHGV-KIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLL   79 (145)
Q Consensus         2 ~~~-v~~~~G~-~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll   79 (145)
                      +++ |++++|+ .+.+|..++++++++||+||||||. ++..+..++.+.+||+++++++++|++||+|+ ++|+++|+|
T Consensus        60 ~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG~-~~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~-~lLa~aGLL  137 (193)
T 1oi4_A           60 AGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGH-SPDYLRGDNRFVTFTRDFVNSGKPVFAICHGP-QLLISADVI  137 (193)
T ss_dssp             TTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBT-HHHHHTTSHHHHHHHHHHHHTTCCEEEETTTH-HHHHHHTCC
T ss_pred             CCcceecCCCCeEEECCCChHHCCcccCCEEEECCCc-CHHHhhhCHHHHHHHHHHHHcCCEEEEECHHH-HHHHHCCcc
Confidence            455 9999999 9999999998876789999999994 56666778999999999999999999999975 689999999


Q ss_pred             CCceeecCcchhhhhcccCceeccccEEEeCC-eEecCCcchHHHHHHHHHHHhc
Q 045076           80 KGLKATCYPSFMEQLAPACAATVESRVQQDGK-VVTTRGPGTTMEFAVALVEQLY  133 (145)
Q Consensus        80 ~g~~~t~~~~~~~~l~~~~~~~~~~~~v~dg~-iiT~~g~~~~~~~~l~li~~~~  133 (145)
                      +||++|+||...+.|++.+..++++++++||| +|||+|+.++++|++++|+++.
T Consensus       138 ~Gr~~Tth~~~~~~l~~~~~~~~~~~~v~Dg~~iiTs~g~~~~~d~~l~li~~l~  192 (193)
T 1oi4_A          138 RGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLG  192 (193)
T ss_dssp             TTCEECCCGGGHHHHHHTTCEECCSSCEEETTTEEEESSGGGHHHHHHHHHHHHC
T ss_pred             CCCEEEeChhHHHHHHHcCCEEecCCEEEECCEEEECCCcchHHHHHHHHHHHhh
Confidence            99999999999999988778888888999999 9999999999999999999874

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}

Probab=100.00  E-value=1.2e-32  Score=195.69  Aligned_cols=136  Identities=21%  Similarity=0.275  Sum_probs=115.2

Q ss_pred             CCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCC
Q 045076            2 QLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKG   81 (145)
Q Consensus         2 ~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g   81 (145)
                      ++ |++++|+.+.+|..++++ +++||+||||||. ++..  .++.+++||+++++++++|++||+|+ ++|+++|||+|
T Consensus        41 ~~-V~~~~G~~v~~d~~l~~~-~~~~D~livpGG~-~~~~--~~~~l~~~l~~~~~~gk~iaaiC~G~-~~La~aGLL~G  114 (206)
T 3f5d_A           41 PI-VSSIGGFKTSVDYIIGLE-PANFNLLVMIGGD-SWSN--DNKKLLHFVKTAFQKNIPIAAICGAV-DFLAKNGLLNN  114 (206)
T ss_dssp             SE-EEBTTSCEEECSEETTSS-CSCCSEEEECCBS-CCCC--CCHHHHHHHHHHHHTTCCEEEETHHH-HHHHHTTTTTT
T ss_pred             CC-EEecCCcEEecCcChhhC-CcCCCEEEEcCCC-Chhh--cCHHHHHHHHHHHHcCCEEEEECHHH-HHHHHcCCCCC
Confidence            45 899999999999999988 4689999999995 5544  89999999999999999999999975 68999999999


Q ss_pred             ceeecCcch-hhhhc--ccCceeccccEEEeCCeEecCCcchHHHHHHHHHHHhcChhHHHHHhCCC
Q 045076           82 LKATCYPSF-MEQLA--PACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL  145 (145)
Q Consensus        82 ~~~t~~~~~-~~~l~--~~~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~~~  145 (145)
                      |++|+||.. ...+.  ..+..++++++|+|||+|||+|++ ++||+++||+++ +.+.|++|++.|
T Consensus       115 r~aTthw~~~~~~~~~~~~~~~~~~~~~V~Dg~iiTs~G~a-~id~al~li~~l-~~~~a~~va~~~  179 (206)
T 3f5d_A          115 HSHTGNFVYLWKDYKQYKPISSFVEKQAVRDKNLVTANGTA-PIEFTNLILEMI-DFDTPENIEKMM  179 (206)
T ss_dssp             SCBCCSCGGGGTTCTTCCCSSCBCCSSEEEETTEEEECTTC-HHHHHHHHHHHT-TCSCHHHHHHHH
T ss_pred             CEEEccCHHHhhhhHhhcCCCeEccCCEEEECCEEECCCch-HHHHHHHHHHHh-CcchHHHHHHHh
Confidence            999999942 11111  124667788999999999999986 999999999975 578999988753

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2

Probab=99.98  E-value=4.6e-32  Score=190.00  Aligned_cols=135  Identities=24%  Similarity=0.322  Sum_probs=117.5

Q ss_pred             CCCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076            1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK   80 (145)
Q Consensus         1 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~   80 (145)
                      ++++|++++|+.+.+|..++++++++||+||||||. +.. +..++.+++||+++++++++|++||+|+ ++|+++|+|+
T Consensus        38 ~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~-~~~-~~~~~~l~~~l~~~~~~~k~i~aiC~G~-~~La~aGlL~  114 (188)
T 2fex_A           38 DGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGL-SWE-KGTAADLGGLVKRFRDRDRLVAGICAAA-SALGGTGVLN  114 (188)
T ss_dssp             TSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBS-HHH-HTCCCCCHHHHHHHHHTTCEEEEETHHH-HHHHHTTTTT
T ss_pred             CCCceeeCCCcEEeccccHHHCCcccCCEEEECCCC-ccc-ccccHHHHHHHHHHHHCCCEEEEECHHH-HHHHHCCCcC
Confidence            357899999999999999999887789999999995 333 4678999999999999999999999975 5899999999


Q ss_pred             CceeecCcchhhhhccc--Cc-eecccc-EEEeCCeEecCCcchHHHHHHHHHHHhcChhHHH
Q 045076           81 GLKATCYPSFMEQLAPA--CA-ATVESR-VQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKAD  139 (145)
Q Consensus        81 g~~~t~~~~~~~~l~~~--~~-~~~~~~-~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~a~  139 (145)
                      ||++|+||.....+++.  +. .++++. +|+|||+||++|++ ++||++++|+++.|.+.++
T Consensus       115 gr~~T~~~~~~~~~~~~~~~~~~~~~~~~~v~Dg~iiTs~g~~-~~d~al~lv~~l~~~~~~~  176 (188)
T 2fex_A          115 DVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGSA-PVSFAVEILKSLGLFGPEA  176 (188)
T ss_dssp             TSCBCCSCHHHHHTSTTCCCGGGBCCCSSCEEETTEEEECTTC-HHHHHHHHHHHTTCCSHHH
T ss_pred             CccccCCcHHHHhhhhhcCCccceecCCCEEEECCEEECCCcc-HHHHHHHHHHHccCCCHHH
Confidence            99999999876666543  12 356778 99999999999996 8999999999999988775

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2

Probab=99.97  E-value=1.7e-31  Score=191.65  Aligned_cols=125  Identities=25%  Similarity=0.332  Sum_probs=109.0

Q ss_pred             CEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhcc------ccCCcee
Q 045076           11 VKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWG------LLKGLKA   84 (145)
Q Consensus        11 ~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~ag------ll~g~~~   84 (145)
                      +.+.++..++++++.+||+||||||......+..++.+.+||+++++++++|++||+|+ ++|+++|      ||+||++
T Consensus        74 ~~i~~~~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~-~~La~ag~~~g~~lL~Gr~~  152 (224)
T 1u9c_A           74 AALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGP-SGLVNATYKDGTPIVKGKTV  152 (224)
T ss_dssp             HHTTSBEECCGGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGG-GGGTTCBCTTSCBTTTTCEE
T ss_pred             HhhcCCCChHHcChhhCCEEEECCCcchHHHhhcCHHHHHHHHHHHHCCCEEEEEChHH-HHHHHccccCCCceecCcEE
Confidence            67888889988876789999999996433457889999999999999999999999975 5899999      9999999


Q ss_pred             ecCcchhhh---------------hcccCceecccc-----EEEeCCeEecCCcchHHHHHHHHHHHhcChh
Q 045076           85 TCYPSFMEQ---------------LAPACAATVESR-----VQQDGKVVTTRGPGTTMEFAVALVEQLYRKG  136 (145)
Q Consensus        85 t~~~~~~~~---------------l~~~~~~~~~~~-----~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~  136 (145)
                      |+||...+.               |++.+..+++++     +|+|||+|||+|+.++++|+++||+++.|++
T Consensus       153 T~~~~~~~~~~~~~~~~p~~~~~~l~~~g~~~~~~~~~~~~vv~Dg~liTs~g~~s~~d~al~lv~~l~g~~  224 (224)
T 1u9c_A          153 TSFTDEEEREVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEERE  224 (224)
T ss_dssp             CCSCHHHHHHHTCGGGSSSCHHHHHHHTTCEECCCSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHTTC
T ss_pred             ecCCCHHHhhccccccCCccHHHHHHHcCCEEecCCCCCccEEEeCCEEECCChhhHHHHHHHHHHHHhccC
Confidence            999986653               555566777665     9999999999999999999999999999864

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*

Probab=99.97  E-value=1.3e-30  Score=189.31  Aligned_cols=128  Identities=18%  Similarity=0.237  Sum_probs=110.5

Q ss_pred             cCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc-------cccC
Q 045076            8 CHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW-------GLLK   80 (145)
Q Consensus         8 ~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a-------gll~   80 (145)
                      +.+..+.++..++++++++||+||||||++.+.++..++.+.+||+++++++++|++||+|+. +|+++       |+|+
T Consensus        80 ~~~~~l~~~~~l~~v~~~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~-~La~a~~~~~g~gll~  158 (244)
T 3kkl_A           80 AFNKALARIKTANEVNASDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPL-LFDGLIDIKTTRPLIE  158 (244)
T ss_dssp             -CHHHHHTCEEGGGCCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGG-GGTTCBCTTTSSBTTT
T ss_pred             HHHHHhcCCCChHHCCHhhCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHHH-HHHHhhccccCCceeC
Confidence            445677888999999888999999999974446788999999999999999999999999875 79998       9999


Q ss_pred             CceeecCcchhh-------------------hhcccCceecc------ccEEEeCCeEecCCcchHHHHHHHHHHHhcCh
Q 045076           81 GLKATCYPSFME-------------------QLAPACAATVE------SRVQQDGKVVTTRGPGTTMEFAVALVEQLYRK  135 (145)
Q Consensus        81 g~~~t~~~~~~~-------------------~l~~~~~~~~~------~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~  135 (145)
                      ||++|+||..++                   .+++.|+.|++      ..+|+|||+||++|+.++++|+++||+.+.+.
T Consensus       159 G~~~T~~~~~ee~~~~~~~~~p~~~~~~l~~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~gp~sa~~~a~~lv~~l~~~  238 (244)
T 3kkl_A          159 GKAITGFPLEGEIALGVDDILRSRKLTTVERVANKNGAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAINALYSV  238 (244)
T ss_dssp             TCEECCSCHHHHHHHTTHHHHHHTTCCCHHHHHHTTTCEECCCSSTTSCCEEEETTEEEESSGGGHHHHHHHHHHHHTC-
T ss_pred             CceecCCCcHHHHhhhhhhhccccccccHHHHHHHCCCEEecCCCCCCCCEEEeCCEEECCChHHHHHHHHHHHHHHhhh
Confidence            999999998743                   34556778876      57999999999999999999999999999876


Q ss_pred             h
Q 045076          136 G  136 (145)
Q Consensus       136 ~  136 (145)
                      +
T Consensus       239 ~  239 (244)
T 3kkl_A          239 E  239 (244)
T ss_dssp             -
T ss_pred             h
Confidence            5

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=99.96  E-value=1e-29  Score=196.00  Aligned_cols=131  Identities=21%  Similarity=0.242  Sum_probs=119.3

Q ss_pred             eeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCCce
Q 045076            4 RVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLK   83 (145)
Q Consensus         4 ~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~~   83 (145)
                      +++++.|+.+.++..++++++++||+||||||. ++..+..++.+.+||+++++++++|+++|+|+ ++|+++|+|+||+
T Consensus        67 ~~~~~~g~~i~~~~~~~~~~~~~~D~livpGG~-~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~-~~La~aGlL~g~~  144 (396)
T 3uk7_A           67 TYFESRGHNFTLNATFDEVDLSKYDGLVIPGGR-APEYLALTASVVELVKEFSRSGKPIASICHGQ-LILAAADTVNGRK  144 (396)
T ss_dssp             SCEEEECCCEECCSCGGGCCGGGCSEEEECCBS-HHHHHTTCHHHHHHHHHHHHTTCCEEEETTTH-HHHHHTTCCTTCE
T ss_pred             hhhhccCceeeccCChhhcCcccCCEEEECCCc-chhhcccCHHHHHHHHHHHHcCCEEEEECchH-HHHHhccccCCCE
Confidence            567888999999999999877799999999995 56667789999999999999999999999975 6899999999999


Q ss_pred             eecCcchhhhhcccCceeccc----cEEEeCCeEecCCcchHHHHHHHHHHHhcChh
Q 045076           84 ATCYPSFMEQLAPACAATVES----RVQQDGKVVTTRGPGTTMEFAVALVEQLYRKG  136 (145)
Q Consensus        84 ~t~~~~~~~~l~~~~~~~~~~----~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~  136 (145)
                      +|+||.+.+.+++.|++|++.    .+++|||+|||+|+.++++|+++||+++.|++
T Consensus       145 ~T~~~~~~~~l~~~g~~~~~~~~~~~~v~Dg~iiT~~g~~~~~d~al~li~~l~g~~  201 (396)
T 3uk7_A          145 CTAYATVGPSLVAAGAKWVEPITPDVCVVDGSLITAATYEGHPEFIQLFVKALGGKI  201 (396)
T ss_dssp             ECCCGGGHHHHHHTTCEECCCSSTTCEEEETTEEEESSGGGHHHHHHHHHHHTTCEE
T ss_pred             eecCcchHHHHHHCCCEEECCCCCcceEecCCEEEecCcccHHHHHHHHHHHHhccc
Confidence            999999999998777777653    48999999999999999999999999999975

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A

Probab=99.96  E-value=1.6e-30  Score=188.85  Aligned_cols=124  Identities=19%  Similarity=0.250  Sum_probs=107.9

Q ss_pred             CCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhcc-------ccCC
Q 045076            9 HGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWG-------LLKG   81 (145)
Q Consensus         9 ~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~ag-------ll~g   81 (145)
                      .|+.+.++..++++++++||+||||||.+.+.++..++.+.+||+++++++++|++||+|+. +|+++|       ||+|
T Consensus        81 ~g~~l~~~~~l~~v~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~-~La~ag~~~~g~~lL~G  159 (243)
T 1rw7_A           81 FNKTLAKIKTPKEVNADDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPA-IFDGLTDKKTGRPLIEG  159 (243)
T ss_dssp             HHHHHHTCBCGGGCCGGGEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGG-GGTTCBCTTTSSBTTTT
T ss_pred             HHhhhccCCChHHCCHhhCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCHH-HHHhcCcccCCceeeCC
Confidence            35677788888888777999999999964456678899999999999999999999999864 899999       9999


Q ss_pred             ceeecCcchhhh-------------------hcccCceec------cccEEEeCCeEecCCcchHHHHHHHHHHHhc
Q 045076           82 LKATCYPSFMEQ-------------------LAPACAATV------ESRVQQDGKVVTTRGPGTTMEFAVALVEQLY  133 (145)
Q Consensus        82 ~~~t~~~~~~~~-------------------l~~~~~~~~------~~~~v~dg~iiT~~g~~~~~~~~l~li~~~~  133 (145)
                      |++|+||...+.                   +++.+..|+      ++.+|+|||+|||+|+.++++|+++||+++.
T Consensus       160 ~~~T~~~~~~e~~~~~~~~~p~~~~~~l~~~l~~~g~~~~~~~~~~~~~vV~Dg~liT~~g~~s~~d~al~lv~~l~  236 (243)
T 1rw7_A          160 KSITGFTDVGETILGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDALK  236 (243)
T ss_dssp             CEECCSCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHCCC
T ss_pred             cEEeecCCHHHhhccccccccccccccHHHHHHHcCCEEEcCCCCCCCCEEEeCCEEECCChhHHHHHHHHHHHHHh
Confidence            999999986665                   444467777      6789999999999999999999999999874

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A

Probab=99.96  E-value=7.8e-30  Score=189.58  Aligned_cols=128  Identities=18%  Similarity=0.265  Sum_probs=109.1

Q ss_pred             CCEEeccccccCC-----CCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc----cccC
Q 045076           10 GVKIVADALVSDC-----RDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW----GLLK   80 (145)
Q Consensus        10 G~~i~~d~~~~~~-----~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a----gll~   80 (145)
                      |+.+.++..++++     ++++||+||||||.+....+..++.+.+||+++++++++|++||+|+. +|+++    |||+
T Consensus       124 g~~l~~~~~l~~v~~~~~~~~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~-~La~a~~~~GLL~  202 (291)
T 1n57_A          124 KSLFRNPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPA-AFLALRHGDNPLN  202 (291)
T ss_dssp             HHHHHSCEEHHHHHHTCCTTCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGG-GGGGGTTSCCTTT
T ss_pred             cceecCCccHHHHhhhccCcccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccHH-HHHhhcccCccCC
Confidence            7778888888873     456999999999963333678899999999999999999999999865 67777    5999


Q ss_pred             CceeecCcchhhhhcc-------------------cCceec----cccEEEeCCeEecCCcchHHHHHHHHHHHhcChhH
Q 045076           81 GLKATCYPSFMEQLAP-------------------ACAATV----ESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGK  137 (145)
Q Consensus        81 g~~~t~~~~~~~~l~~-------------------~~~~~~----~~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~  137 (145)
                      ||++|+||...+.+++                   .|+.++    +..+|+|||+|||+|+.++++|+++||+++.|.+.
T Consensus       203 Gr~~Tt~~~~~e~~~~~~~~~~~~~P~~le~~L~~~ga~~~~~~~~~~vV~Dg~lITs~gp~s~~d~al~lve~l~g~~~  282 (291)
T 1n57_A          203 GYSICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLAAYA  282 (291)
T ss_dssp             TCEECCCCGGGGGTTTTTTSSSSCCSSCHHHHHHHTTCEECCSSCSCCEEEETTEEEESSGGGHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEeCCCHHHhhhccccccccccchhHHHHHHHCCCEEECCCCCCCEEEeCCEEECCCHHHHHHHHHHHHHHHhCchh
Confidence            9999999998877642                   256777    77899999999999999999999999999998764


Q ss_pred             H
Q 045076          138 A  138 (145)
Q Consensus       138 a  138 (145)
                      .
T Consensus       283 ~  283 (291)
T 1n57_A          283 G  283 (291)
T ss_dssp             C
T ss_pred             h
Confidence            3

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=99.96  E-value=6.3e-29  Score=191.56  Aligned_cols=130  Identities=22%  Similarity=0.268  Sum_probs=118.4

Q ss_pred             eeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCCce
Q 045076            4 RVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLK   83 (145)
Q Consensus         4 ~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~~   83 (145)
                      .++++.|+.+.++..++++++++||+||||||. +...+..++.+++||+++++++++|++||+|+ ++|+++|+|+||+
T Consensus       260 ~~~~~~g~~i~~~~~~~~~~~~~~D~livpGg~-~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~g~-~~La~aGlL~g~~  337 (396)
T 3uk7_A          260 TYSEKPGHTFALTTNFDDLVSSSYDALVIPGGR-APEYLALNEHVLNIVKEFMNSEKPVASICHGQ-QILAAAGVLKGRK  337 (396)
T ss_dssp             SCEEEECCCEECCSCGGGCCGGGCSEEEECCBS-HHHHHTTCHHHHHHHHHHHHTTCCEEEEGGGH-HHHHHTTTTTTCE
T ss_pred             hhhhcCCceeeccCCHHHCCcccCCEEEECCCc-chhhhccCHHHHHHHHHHHHCCCEEEEEchHH-HHHHHcCCcCCCE
Confidence            367889999999999999887799999999995 56667789999999999999999999999975 6899999999999


Q ss_pred             eecCcchhhhhcccCceeccc----cEEEeCCeEecCCcchHHHHHHHHHHHhcCh
Q 045076           84 ATCYPSFMEQLAPACAATVES----RVQQDGKVVTTRGPGTTMEFAVALVEQLYRK  135 (145)
Q Consensus        84 ~t~~~~~~~~l~~~~~~~~~~----~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~  135 (145)
                      +|+||...+.++..+..|+++    ++|+|||+|||+|+.+++||++++|+++.|.
T Consensus       338 ~T~~~~~~~~~~~~~~~~~~~~~~~~~v~Dg~iiTs~g~~~~~d~~l~li~~l~~~  393 (396)
T 3uk7_A          338 CTAYPAVKLNVVLGGGTWLEPDPIDRCFTDGNLVTGAAWPGHPEFVSQLMALLGIQ  393 (396)
T ss_dssp             ECCCGGGHHHHHHTTCEECCCSSTTCEEEETTEEEESSGGGHHHHHHHHHHHHTCE
T ss_pred             EecCccHHHHHHHCCCEEEcCCCceeEEEcCCEEECCCchhHHHHHHHHHHHhccc
Confidence            999999999887777888775    5999999999999999999999999999875

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0

Probab=99.96  E-value=1.5e-28  Score=178.76  Aligned_cols=123  Identities=20%  Similarity=0.200  Sum_probs=106.0

Q ss_pred             EEec-cccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc------cccCCcee
Q 045076           12 KIVA-DALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW------GLLKGLKA   84 (145)
Q Consensus        12 ~i~~-d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a------gll~g~~~   84 (145)
                      .+.+ +..++++++++||+||||||++...++..++.+.+||+++++++++|++||+|++ +|+++      |+|+||++
T Consensus        90 ~l~~~~~~l~~v~~~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~-~La~a~~~~g~gll~G~~~  168 (247)
T 3n7t_A           90 KMNKQVFKAGDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPA-MLPGIHDENGDSVIKDKTV  168 (247)
T ss_dssp             HHHHCCEEGGGSCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGG-GGGGCBCTTSSBTTTTCEE
T ss_pred             HHhccCCCHHHCChhhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHH-HHHHhhcccCCccccCcee
Confidence            3455 7788898888999999999963336688999999999999999999999999875 79998      99999999


Q ss_pred             ecCcchhhh-------------------hcccCceecc------ccEEEeCCeEecCCcchHHHHHHHHHHHhcCh
Q 045076           85 TCYPSFMEQ-------------------LAPACAATVE------SRVQQDGKVVTTRGPGTTMEFAVALVEQLYRK  135 (145)
Q Consensus        85 t~~~~~~~~-------------------l~~~~~~~~~------~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~  135 (145)
                      |+||...+.                   +++.|+.|++      ..+|+|||+||++|+.++++|+++||+.+.+.
T Consensus       169 T~~~~~ee~~~~~~~~~p~~~~~~l~~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~~p~sa~~~a~~lv~~L~~~  244 (247)
T 3n7t_A          169 TGFTTKGEIMIKVIDKMREDHLHTIADMAQTANAEYVPPEDPWDDFCKVDGRIVTGANPQSATNTARDTIKVYEGI  244 (247)
T ss_dssp             CCCCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHHH
T ss_pred             cCCCcHHHhhhhhhhhccccchhhHHHHHHHCCCEEecCCcCCCceEEEcCCEEECCChHHHHHHHHHHHHHHhhh
Confidence            999997543                   4455777876      47999999999999999999999999998643

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A

Probab=99.94  E-value=1.7e-27  Score=171.81  Aligned_cols=132  Identities=22%  Similarity=0.248  Sum_probs=107.6

Q ss_pred             eeeecCCCEEecc-------ccccCCCCCCccEEEEcCCccChhcc----------ccChHHHHHHHHHHHCCCeEEEEc
Q 045076            4 RVDACHGVKIVAD-------ALVSDCRDAVFDLIALPVCMPDATNL----------KESKVLETIVKKQASNGRLYAAVC   66 (145)
Q Consensus         4 ~v~~~~G~~i~~d-------~~~~~~~~~~~D~liipGG~~~~~~~----------~~~~~l~~~l~~~~~~~~~v~aic   66 (145)
                      +++++.|+.+.++       ..++++++++||+||||||.+...++          ..++.+.+||+++++++++|++||
T Consensus        61 ~~~~~~g~~i~~~~~~~~~~~~l~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC  140 (232)
T 1vhq_A           61 AMTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMC  140 (232)
T ss_dssp             BCSCCCBHHHHHTTTTTTCCEEGGGCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEET
T ss_pred             chhhhhhhhHHHHHhhhcCCCCHHHcCcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEEC
Confidence            3478889988888       88888777789999999996432212          248999999999999999999999


Q ss_pred             chhHHHhhhccccC-CceeecC-c-chhhhhcccCceeccc---cEEEe--CCeEecCCcchHHHHHHHHHHHhcChhH-
Q 045076           67 ASPAVALGSWGLLK-GLKATCY-P-SFMEQLAPACAATVES---RVQQD--GKVVTTRGPGTTMEFAVALVEQLYRKGK-  137 (145)
Q Consensus        67 ~g~~~~La~agll~-g~~~t~~-~-~~~~~l~~~~~~~~~~---~~v~d--g~iiT~~g~~~~~~~~l~li~~~~g~~~-  137 (145)
                      +|+ ++|+++  |+ ||++|+| | .+.+.|++.|..|++.   .+++|  ||+|||+    +++++++||+++.|.+. 
T Consensus       141 ~G~-~~La~a--L~~Gr~~Tth~~~~~~~~l~~~g~~~~~~~~~~~~vd~dg~liTs~----~~d~al~lv~~~~G~~~~  213 (232)
T 1vhq_A          141 IAP-AMLPKI--FDFPLRLTIGTDIDTAEVLEEMGAEHVPCPVDDIVVDEDNKIVTTP----AYMLAQNIAEAASGIDKL  213 (232)
T ss_dssp             TGG-GGHHHH--CSSCCEECCCSCHHHHHHHHHTTCEECCCCTTCCEEETTTTEEEEC----GGGTCSSHHHHHHHHHHH
T ss_pred             HHH-HHHHHH--hcCCCEEeccCCHHHHHHHHHcCCEEecCCCCceEEecCCCEEECC----CHHHHHHHHHHHcCHHHH
Confidence            986 589998  79 9999999 5 6788888777777653   55555  9999997    88899999999999974 


Q ss_pred             HHHHh
Q 045076          138 ADEVS  142 (145)
Q Consensus       138 a~~va  142 (145)
                      ++++.
T Consensus       214 ~~~~~  218 (232)
T 1vhq_A          214 VSRVL  218 (232)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}

Probab=99.93  E-value=3.7e-27  Score=170.91  Aligned_cols=117  Identities=15%  Similarity=0.120  Sum_probs=97.7

Q ss_pred             CeeeecCCCEEecc-------ccccCCCCCCccEEEEcCCccChhc-----------cccChHHHHHHHHHHHCCCeEEE
Q 045076            3 LRVDACHGVKIVAD-------ALVSDCRDAVFDLIALPVCMPDATN-----------LKESKVLETIVKKQASNGRLYAA   64 (145)
Q Consensus         3 ~~v~~~~G~~i~~d-------~~~~~~~~~~~D~liipGG~~~~~~-----------~~~~~~l~~~l~~~~~~~~~v~a   64 (145)
                      .+++++.|+.+.+|       ..++++++++||+||||||.+...+           +..++.+.+||+++++++++|++
T Consensus        77 ~~v~~s~g~~v~~d~~~~~~~~~l~dv~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~Iaa  156 (242)
T 3l3b_A           77 ESVGEVRNILVESARIARGSVYDIEQIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGA  156 (242)
T ss_dssp             EEESCCCBHHHHHHHHTTTCEEEGGGCCGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEE
T ss_pred             ccccccCCeEEecchhccccCCChHHCCcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEE
Confidence            46888899999988       7899988789999999999643222           25679999999999999999999


Q ss_pred             EcchhHHHhhhcc-ccCCceeecCcchhhhhcccCceecc---ccEEEe--CCeEecCCcch
Q 045076           65 VCASPAVALGSWG-LLKGLKATCYPSFMEQLAPACAATVE---SRVQQD--GKVVTTRGPGT  120 (145)
Q Consensus        65 ic~g~~~~La~ag-ll~g~~~t~~~~~~~~l~~~~~~~~~---~~~v~d--g~iiT~~g~~~  120 (145)
                      ||+|+ ++|+++| +|+||++|+||.....+++.|+.|++   +++|+|  ||+||++++..
T Consensus       157 IC~G~-~~La~ag~lL~Gr~~T~~~~~~~~l~~~Ga~~~~~~~~~vVvD~~g~liTs~a~~~  217 (242)
T 3l3b_A          157 VCISP-AVVVALLKDIAKVKVTIGEDSNGLIDKMGGVHVDCPTIKSVKDDVNRIFSCSAYMR  217 (242)
T ss_dssp             ETTHH-HHHHHHHTTTCCCEECCCC----CHHHHTCEECCCCTTCCEEETTTTEEEECGGGS
T ss_pred             ECHHH-HHHHHhCcccCCCEEEecCChHHHHHHCCCEEEcCCCCeEEEECCCCEEECcCccc
Confidence            99976 5899999 99999999999988888888888887   579999  99999998753

>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3

Probab=99.76  E-value=1.2e-18  Score=141.89  Aligned_cols=115  Identities=15%  Similarity=0.145  Sum_probs=96.5

Q ss_pred             CCCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc-ccc
Q 045076            1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW-GLL   79 (145)
Q Consensus         1 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a-gll   79 (145)
                      ++++|+++.|+.+.+|..+++++..+||+||||||..++..+..++.+++||+++++++++|++||+|+ ++|+++ ||.
T Consensus       570 ~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~~l~~~~~l~~~Lr~~~~~gK~IaAIC~G~-~lLA~AlGL~  648 (715)
T 1sy7_A          570 RRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETLSKNGRALHWIREAFGHLKAIGATGEAV-DLVAKAIALP  648 (715)
T ss_dssp             CSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHH-HHHHHHHCCT
T ss_pred             CCCceecCCCceEecccccccCCcccCCEEEEcCCcccHhhhccCHHHHHHHHHHHhCCCEEEEECHHH-HHHHHccCcH
Confidence            357899999999999999999877789999999995456667889999999999999999999999975 689999 983


Q ss_pred             CCceeecCcchhhhhcccCceeccccEEEeCCeEecCCcc------------hHHHHHHHHHHHhc
Q 045076           80 KGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPG------------TTMEFAVALVEQLY  133 (145)
Q Consensus        80 ~g~~~t~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~------------~~~~~~l~li~~~~  133 (145)
                                   .+++.|.    +.+|+||++||++|+.            +..+|+.++++.+.
T Consensus       649 -------------~L~~aGa----~~VVvDg~lITs~gp~~~~l~~~~~i~~s~~~fa~~fi~~L~  697 (715)
T 1sy7_A          649 -------------QVTVSSE----AEVHESYGVVTLKKVKPESFTDAVKIAKGAAGFLGEFFYAIA  697 (715)
T ss_dssp             -------------TSCCCCS----SSCEEETTEEEESSCCTTTTTSCCCCSTTCSSHHHHHHHHHH
T ss_pred             -------------hHHhcCC----CcEEEeCCEEECCCCcccccccccccccCHHHHHHHHHHHHH
Confidence                         2333322    6799999999999986            56778888888774

>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...

Probab=99.53  E-value=2e-14  Score=116.67  Aligned_cols=75  Identities=9%  Similarity=0.054  Sum_probs=69.6

Q ss_pred             CCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhcccc
Q 045076            2 QLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLL   79 (145)
Q Consensus         2 ~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll   79 (145)
                      +++|++++|+.|.+|.++++++..+||+||||||  +...+..++.+++||+++++++|+|++||+|++ +|+++|+-
T Consensus       637 ~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG--g~~~Lr~d~~vl~~Vre~~~~gKpIAAIC~Gp~-lLa~AGL~  711 (753)
T 3ttv_A          637 MGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG--NIADIADNGDANYYLMEAYKHLKPIALAGDARK-FKATIKIA  711 (753)
T ss_dssp             SSEEECTTSCEEECCEETTTSCGGGCSEEEECCS--CGGGTTTCHHHHHHHHHHHHTTCCEEEEGGGGG-GGGGGTCC
T ss_pred             CCeEEeCCCCEEecccchhhCCCcCCCEEEECCC--ChHHhhhCHHHHHHHHHHHhcCCeEEEECchHH-HHHHcCCC
Confidence            5689999999999999999998888999999999  677889999999999999999999999999875 89999983

>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*

Probab=99.28  E-value=6.9e-12  Score=101.52  Aligned_cols=66  Identities=18%  Similarity=0.115  Sum_probs=59.2

Q ss_pred             eccccccCCCCCCccEEEEcCCccC----------------hhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhcc
Q 045076           14 VADALVSDCRDAVFDLIALPVCMPD----------------ATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWG   77 (145)
Q Consensus        14 ~~d~~~~~~~~~~~D~liipGG~~~----------------~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~ag   77 (145)
                      .+|.++++++..+||+||||||..+                +..|..++.+++||+++++.+|+|++||+|++ +|..+|
T Consensus       571 ~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~-vL~~aG  649 (688)
T 2iuf_A          571 NVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEPSAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSD-ALESGQ  649 (688)
T ss_dssp             TCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCCCTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHH-HHHHTT
T ss_pred             ccccchhcCCccccCeEEecCCCcccccccccccccccccchhhcccChHHHHHHHHHHHcCCEEEEECchHH-HHHHcC
Confidence            6888999988889999999999656                66788999999999999999999999999887 799999


Q ss_pred             ccC
Q 045076           78 LLK   80 (145)
Q Consensus        78 ll~   80 (145)
                      +..
T Consensus       650 i~~  652 (688)
T 2iuf_A          650 ISS  652 (688)
T ss_dssp             CCT
T ss_pred             CCC
Confidence            853

>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}

Probab=99.10  E-value=1.1e-10  Score=94.46  Aligned_cols=65  Identities=22%  Similarity=0.189  Sum_probs=57.6

Q ss_pred             ccccccCCCCCCccEEEEcCCccC-------hhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076           15 ADALVSDCRDAVFDLIALPVCMPD-------ATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK   80 (145)
Q Consensus        15 ~d~~~~~~~~~~~D~liipGG~~~-------~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~   80 (145)
                      +|.++++++..+||+|+||||..+       +..++.++.+++|++++++++|+|++||+|++ +|.++|+-.
T Consensus       579 vD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~Lr~~~~a~~fV~e~~~hgKpIAAIchgp~-lL~~AGI~~  650 (688)
T 3ej6_A          579 VDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPLFPAGRPSQILTDGYRWGKPVAAVGSAKK-ALQSIGVEE  650 (688)
T ss_dssp             CCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTTSCTTHHHHHHHHHHHTTCCEEEEGGGHH-HHHHTTCCS
T ss_pred             cccCcccCChhcCcEEEECCCcccccccccchhhhccCHHHHHHHHHHHHcCCEEEEeCccHH-HHHHcCCCC
Confidence            788999998889999999999654       26688899999999999999999999999876 799999843

>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}

Probab=98.67  E-value=1.1e-08  Score=71.92  Aligned_cols=58  Identities=26%  Similarity=0.361  Sum_probs=46.3

Q ss_pred             CCCccEEEEcCCccChhc-----cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCCc
Q 045076           24 DAVFDLIALPVCMPDATN-----LKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGL   82 (145)
Q Consensus        24 ~~~~D~liipGG~~~~~~-----~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~   82 (145)
                      ..++|.||||||......     +.+++.+.++|+++.+++++|.+||.|. .+|+.+|+|.|+
T Consensus        39 ~~~~d~lil~Gg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pilgIC~G~-qlLa~aGll~g~  101 (213)
T 3d54_D           39 LDDYELIILPGGFSYGDYLRPGAVAAREKIAFEIAKAAERGKLIMGICNGF-QILIEMGLLKGA  101 (213)
T ss_dssp             CSSCSEEEECEECGGGGCSSTTHHHHTSTTHHHHHHHHHHTCEEEECHHHH-HHHHHHTSSCSE
T ss_pred             cccCCEEEECCCCchhhhhccccccccHHHHHHHHHHHHCCCEEEEECHHH-HHHHHcCCCCCC
Confidence            458999999999532222     2245778999999999999999999975 589999999984

>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1

Probab=98.09  E-value=2.1e-06  Score=60.81  Aligned_cols=51  Identities=22%  Similarity=0.200  Sum_probs=38.8

Q ss_pred             CCccEEEEcCCccChh-ccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDAT-NLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~-~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      +++|.||||||..... .+.++..+.++|+++.+++++|.+||.|.+ +|+.+
T Consensus        59 ~~~Dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Q-lL~~~  110 (219)
T 1q7r_A           59 EGLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAGLI-LLAKR  110 (219)
T ss_dssp             TTCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETTHHH-HHEEE
T ss_pred             hhCCEEEECCCChHHHHHHhhhhHHHHHHHHHHHcCCeEEEECHHHH-HHHHH
Confidence            3799999999953221 223345567999999999999999999877 67764

>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*

Probab=98.07  E-value=2e-06  Score=59.75  Aligned_cols=51  Identities=18%  Similarity=0.185  Sum_probs=38.5

Q ss_pred             CCccEEEEcCCccChh-ccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDAT-NLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~-~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      +++|.|++|||..... .+.++..+.++|+++.++++++.+||.|.. +|+.+
T Consensus        37 ~~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilgIC~G~q-~l~~~   88 (196)
T 2nv0_A           37 NEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLI-ILAKE   88 (196)
T ss_dssp             GGCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHH-HHSBC
T ss_pred             hhCCEEEECCCChhhHHHHhhhHHHHHHHHHHHHCCCcEEEECHHHH-HHHHH
Confidence            3799999999953222 222345568899999999999999999876 67764

>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}

Probab=97.97  E-value=3.6e-06  Score=59.09  Aligned_cols=51  Identities=18%  Similarity=0.205  Sum_probs=37.9

Q ss_pred             CCccEEEEcCCccChh-ccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDAT-NLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~-~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      .++|.||+|||.+... .+..+..+.++|+++.+++++|.+||.|.+ +|+.+
T Consensus        56 ~~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~Q-lL~~~  107 (208)
T 2iss_D           56 DMVDGLILPGGESTTMIRILKEMDMDEKLVERINNGLPVFATCAGVI-LLAKR  107 (208)
T ss_dssp             GGCSEEEECSSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHH-HHEEE
T ss_pred             hhCCEEEECCCcHHHHHhhhhhhhHHHHHHHHHHCCCeEEEECHHHH-HHHHH
Confidence            3799999999953221 122234467899999999999999999876 67764

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}

Probab=97.83  E-value=3.2e-05  Score=55.26  Aligned_cols=51  Identities=18%  Similarity=0.307  Sum_probs=38.4

Q ss_pred             CCccEEEEcCCccChhccccC------hHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATNLKES------KVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~~~~------~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++||+|||+||..++.....+      ....++|+++.+++++|.+||-|.+ +|+.+
T Consensus        44 ~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~PvLGIClG~Q-lL~~~  100 (236)
T 3l7n_A           44 DDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQKAAKSEKIIVGVCLGAQ-LMGVA  100 (236)
T ss_dssp             GGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHHHHHHTTCEEEEETHHHH-HHHHH
T ss_pred             cccCEEEECCCCCCcccccccCcccchHHHHHHHHHHHHcCCCEEEEchHHH-HHHHH
Confidence            479999999995443221111      3478999999999999999999877 57764

>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.83  E-value=1.2e-05  Score=55.46  Aligned_cols=51  Identities=18%  Similarity=0.184  Sum_probs=38.4

Q ss_pred             CCccEEEEcCCccC-hhccccChHHHHHHHHHHHCC-CeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPD-ATNLKESKVLETIVKKQASNG-RLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~-~~~~~~~~~l~~~l~~~~~~~-~~v~aic~g~~~~La~a   76 (145)
                      +++|.|++|||.+. ...+..+..+.++|+++.+++ ++|.+||.|.. +|+.+
T Consensus        38 ~~~dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~~PilGiC~G~Q-~l~~~   90 (191)
T 2ywd_A           38 EGLKALIVPGGESTTIGKLAREYGIEDEVRKRVEEGSLALFGTCAGAI-WLAKE   90 (191)
T ss_dssp             TTCSEEEECSSCHHHHHHHHHHTTHHHHHHHHHHTTCCEEEEETHHHH-HHEEE
T ss_pred             ccCCEEEECCCChhhhHHhhhhhhHHHHHHHHHHCCCCeEEEECHHHH-HHHHH
Confidence            37999999999422 222332456789999999999 99999999866 67764

>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G

Probab=97.74  E-value=1.6e-05  Score=56.37  Aligned_cols=50  Identities=12%  Similarity=0.030  Sum_probs=38.1

Q ss_pred             CccEEEEcCCccCh-hccccC--hHHHHHHHHHHHC-CCeEEEEcchhHHHhhhc
Q 045076           26 VFDLIALPVCMPDA-TNLKES--KVLETIVKKQASN-GRLYAAVCASPAVALGSW   76 (145)
Q Consensus        26 ~~D~liipGG~~~~-~~~~~~--~~l~~~l~~~~~~-~~~v~aic~g~~~~La~a   76 (145)
                      ++|.||+|||.... ..+..+  ..+.++|+++.++ +++|.+||.|.. +|+.+
T Consensus        43 ~~dglil~GG~~~~~~~~~~~d~~~~~~~i~~~~~~~g~PilGIC~G~Q-lL~~~   96 (227)
T 2abw_A           43 LCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCI-LLSKN   96 (227)
T ss_dssp             TCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHH-HTEEE
T ss_pred             cCCEEEECCCcHHHHHHHHHHhHHHHHHHHHHHHHhcCCEEEEECHHHH-HHHHH
Confidence            69999999995222 122222  5678999999999 999999999866 68765

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A

Probab=97.72  E-value=1.6e-05  Score=54.74  Aligned_cols=46  Identities=9%  Similarity=0.047  Sum_probs=36.2

Q ss_pred             CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      +||.|++|||. .+..   ...+.++++++.++++++.+||.|.+ +|+.+
T Consensus        43 ~~dglil~Gg~-~~~~---~~~~~~~i~~~~~~~~PilGIC~G~Q-~l~~~   88 (189)
T 1wl8_A           43 NPKGIIFSGGP-SLEN---TGNCEKVLEHYDEFNVPILGICLGHQ-LIAKF   88 (189)
T ss_dssp             CCSEEEECCCS-CTTC---CTTHHHHHHTGGGTCSCEEEETHHHH-HHHHH
T ss_pred             CCCEEEECCCC-Chhh---hhhHHHHHHHHhhCCCeEEEEcHHHH-HHHHH
Confidence            59999999994 4432   45568889877788999999999877 57764

>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1

Probab=97.69  E-value=4.1e-05  Score=53.20  Aligned_cols=50  Identities=16%  Similarity=0.200  Sum_probs=37.7

Q ss_pred             CCccEEEEcCCccChhc-c--ccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATN-L--KESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~-~--~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      +++|.|++||+ +.+.. +  .++..+.++|+++.+++++|.+||.|.+ +|+.+
T Consensus        39 ~~~d~lil~G~-g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Q-ll~~~   91 (200)
T 1ka9_H           39 EEADLLVLPGQ-GHFGQVMRAFQESGFVERVRRHLERGLPFLGICVGMQ-VLYEG   91 (200)
T ss_dssp             SSCSEEEECCC-SCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECTHHHH-TTSSE
T ss_pred             ccCCEEEECCC-CcHHHHHHHHHhcCHHHHHHHHHHcCCeEEEEcHHHH-HHHHh
Confidence            47999999995 23221 1  1224578999999999999999999876 68887

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*

Probab=97.61  E-value=8.1e-05  Score=53.77  Aligned_cols=51  Identities=12%  Similarity=0.019  Sum_probs=38.2

Q ss_pred             CCccEEEEcCCccChhc-cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATN-LKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~-~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      .+||.||||||..++.. ...-..+.++|+++.+.+++|.+||-|.. +|+.+
T Consensus        47 ~~~d~lIl~GGp~~~~d~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q-ll~~~   98 (250)
T 3m3p_A           47 RDCSGLAMMGGPMSANDDLPWMPTLLALIRDAVAQRVPVIGHCLGGQ-LLAKA   98 (250)
T ss_dssp             GGSSEEEECCCSSCTTSCCTTHHHHHHHHHHHHHHTCCEEEETHHHH-HHHHH
T ss_pred             ccCCEEEECCCCCcccccchHHHHHHHHHHHHHHcCCCEEEECHHHH-HHHHH
Confidence            47999999999533322 12224678899998889999999999877 57764

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1

Probab=97.59  E-value=0.00012  Score=52.47  Aligned_cols=51  Identities=12%  Similarity=0.130  Sum_probs=37.7

Q ss_pred             CCccEEEEcCCccChhccccC---hHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATNLKES---KVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~~~~---~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      .++|.||+|||..+.......   ..+.++|+++.+++++|.+||-|.. +|+.+
T Consensus        56 ~~~Dglil~GG~~~~~~~~~~~~l~~~~~~i~~~~~~~~PiLGIC~G~Q-lL~~a  109 (239)
T 1o1y_A           56 EEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQ-MLAKV  109 (239)
T ss_dssp             GGCSEEEECCCSCCTTCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHHH-HHHHH
T ss_pred             hcCCEEEECCCCccccCCccChhHHHHHHHHHHHHHCCCCEEEEchhHH-HHHHH
Confidence            479999999995333221111   3578899998888999999999877 57764

>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}

Probab=97.43  E-value=2.5e-05  Score=54.69  Aligned_cols=49  Identities=14%  Similarity=0.186  Sum_probs=33.8

Q ss_pred             CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++|.||+||+ +++...........+++...+.+++|.+||.|-. +|+.+
T Consensus        40 ~~D~lilPG~-g~~~~~~~~~~~~~~i~~~~~~~~PvlGIClG~Q-lL~~~   88 (211)
T 4gud_A           40 AADKLFLPGV-GTASEAMKNLTERDLIELVKRVEKPLLGICLGMQ-LLGKL   88 (211)
T ss_dssp             HCSEEEECCC-SCHHHHHHHHHHTTCHHHHHHCCSCEEEETHHHH-TTSSE
T ss_pred             CCCEEEECCC-CCHHHHHHHHHhcChHHHHHHcCCCEEEEchhHh-HHHHH
Confidence            7899999996 3443322222333456777788999999999876 57654

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1

Probab=97.41  E-value=0.00013  Score=50.51  Aligned_cols=49  Identities=14%  Similarity=0.088  Sum_probs=34.3

Q ss_pred             CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      +||.||++||...+....+.+...++++++ ++++++.+||.|.+ +|+.+
T Consensus        45 ~~dglil~gG~~~~~~~~~~~~~~~~i~~~-~~~~PvLGIC~G~Q-lL~~~   93 (195)
T 1qdl_B           45 DPDRLIISPGPGTPEKREDIGVSLDVIKYL-GKRTPILGVCLGHQ-AIGYA   93 (195)
T ss_dssp             CCSEEEECCCSSCTTSHHHHTTHHHHHHHH-TTTSCEEEETHHHH-HHHHH
T ss_pred             CCCEEEECCCCCChhhhhhhhHHHHHHHHh-cCCCcEEEEehHHH-HHHHH
Confidence            599999988843333221123456888875 78999999999877 57764

>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*

Probab=97.40  E-value=0.00022  Score=61.94  Aligned_cols=58  Identities=10%  Similarity=0.059  Sum_probs=45.1

Q ss_pred             CCCccEEEEcCCccChh----------ccccChHHHHHHHHHH-HCCCeEEEEcchhHHHhhhc-cccCCc
Q 045076           24 DAVFDLIALPVCMPDAT----------NLKESKVLETIVKKQA-SNGRLYAAVCASPAVALGSW-GLLKGL   82 (145)
Q Consensus        24 ~~~~D~liipGG~~~~~----------~~~~~~~l~~~l~~~~-~~~~~v~aic~g~~~~La~a-gll~g~   82 (145)
                      .++||.|++|||....+          ....++.+.+.++++. ++++++.+||+|.+ +|.++ |||.|.
T Consensus      1090 l~~~d~lvlPGGfSygD~l~~g~~~a~~~l~~~~l~~~l~~~~~~~g~pvLGICnG~Q-lL~e~~gllPg~ 1159 (1303)
T 3ugj_A         1090 LGNFHALVACGGFSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQ-MMSNLRELIPGS 1159 (1303)
T ss_dssp             GGGCSEEEECCSCGGGGTTSTTHHHHHHHHTSHHHHHHHHHHHHSSSCEEEEETHHHH-HHHTTGGGSTTC
T ss_pred             HhhCCEEEECCCCcchhhhccchhHHHHHHhchhHHHHHHHHHHhCCCcEEEECHHHH-HHHHhcCcCCCC
Confidence            35899999999953222          1245677888888865 68999999999988 68888 999986

>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B

Probab=97.40  E-value=0.00019  Score=49.79  Aligned_cols=50  Identities=20%  Similarity=0.314  Sum_probs=36.2

Q ss_pred             CCccEEEEcCCccChhc-cc--cChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATN-LK--ESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~-~~--~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      .++|.||+||+ ..... ..  .+..+.++|+++.+++++|.+||.|.. +|+.+
T Consensus        41 ~~~dglilpG~-g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Q-ll~~~   93 (201)
T 1gpw_B           41 DLYDLLFIPGV-GHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCLGMQ-LLFEE   93 (201)
T ss_dssp             SCCSEEEECCC-SCSHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHH-TTSSE
T ss_pred             cCCCEEEECCC-CcHHHHHHHHHhhCHHHHHHHHHHcCCeEEEEChhHH-HHHHh
Confidence            48999999996 23221 11  112367899999899999999999866 68776

>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*

Probab=97.36  E-value=0.0002  Score=54.70  Aligned_cols=48  Identities=17%  Similarity=0.011  Sum_probs=38.7

Q ss_pred             CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      .++|.|||+||...+.   +....+++++++.+++++|.+||-|-+ +|+.+
T Consensus       230 ~~~DGliLsGGPgdp~---~~~~~~~~Ir~~~~~~~PILGIClG~Q-LLa~A  277 (379)
T 1a9x_B          230 MNPDGIFLSNGPGDPA---PCDYAITAIQKFLETDIPVFGICLGHQ-LLALA  277 (379)
T ss_dssp             TCCSEEEECCCSBCST---TCHHHHHHHHHHTTSCCCEEEETHHHH-HHHHH
T ss_pred             cCCCEEEEeCCCCChH---HHHHHHHHHHHHHHcCCCEEEECchHH-HHHHH
Confidence            4699999999953333   356788999999988999999999877 57764

>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A

Probab=97.28  E-value=0.00033  Score=51.57  Aligned_cols=45  Identities=9%  Similarity=-0.095  Sum_probs=36.5

Q ss_pred             CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhh
Q 045076           26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGS   75 (145)
Q Consensus        26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~   75 (145)
                      ++|.||||||. +...   .+.+.++++++.+++++|.+||.|.+ +|+.
T Consensus        90 ~~dgiil~GG~-~~~~---~~~~~~~i~~~~~~~~PilGIC~G~Q-~l~~  134 (289)
T 2v4u_A           90 KADGILVPGGF-GIRG---TLGKLQAISWARTKKIPFLGVXLGMQ-LAVI  134 (289)
T ss_dssp             HCSEEEECSCC-SSTT---HHHHHHHHHHHHHTTCCEEEETHHHH-HHHH
T ss_pred             hCCEEEecCCC-Cchh---HHHHHHHHHHHHHcCCcEEEECccHH-HHHH
Confidence            68999999995 3322   25788999999999999999999877 5765

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1

Probab=97.19  E-value=0.00051  Score=48.20  Aligned_cols=47  Identities=9%  Similarity=0.066  Sum_probs=31.6

Q ss_pred             CccEEEEcCC-ccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           26 VFDLIALPVC-MPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        26 ~~D~liipGG-~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++|.|||||| ..........+.+.+++   .++++++.+||-|.. +|+.+
T Consensus        54 ~~DglIl~GG~p~~~~~~~~~~~l~~~~---~~~~~PiLGIC~G~Q-ll~~~  101 (212)
T 2a9v_A           54 GLDGLVLSGGAPNIDEELDKLGSVGKYI---DDHNYPILGICVGAQ-FIALH  101 (212)
T ss_dssp             TCSEEEEEEECSCGGGTGGGHHHHHHHH---HHCCSCEEEETHHHH-HHHHH
T ss_pred             CCCEEEECCCCCCCCcccccchhHHHHH---HhCCCCEEEEChHHH-HHHHH
Confidence            5999999999 43333221223344443   468999999999877 57764

>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}

Probab=97.04  E-value=0.00065  Score=48.97  Aligned_cols=50  Identities=14%  Similarity=0.142  Sum_probs=36.8

Q ss_pred             CCccEEEEcCCccC--hhcc-------------ccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPD--ATNL-------------KESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~--~~~~-------------~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      +++|.|+|+||. +  +...             .++...+++++++.+++++|.+||-|-+ +|+.+
T Consensus        60 ~~~DGlil~GG~-~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~~PiLGIC~G~Q-ll~~a  124 (254)
T 3fij_A           60 SLVDGLLLTGGQ-DITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQ-LVNVA  124 (254)
T ss_dssp             HTCSEEEECCCS-CCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTCCEEEETHHHH-HHHHH
T ss_pred             hhCCEEEECCCC-CCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcCCCEEEECHHHH-HHHHH
Confidence            379999999993 3  1111             1223478999999999999999999876 57764

>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}

Probab=97.00  E-value=0.00055  Score=46.80  Aligned_cols=48  Identities=19%  Similarity=0.143  Sum_probs=32.0

Q ss_pred             CCccEEEEcCCccChhc-cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATN-LKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~-~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      .++|.|++|||...... +.....+.++++   +++++|.+||.|.+ +|+.+
T Consensus        36 ~~~dglil~GG~~~~~~~~~~~~~~~~~i~---~~~~PilGIC~G~Q-ll~~~   84 (186)
T 2ywj_A           36 EGIDALIIPGGESTAIGKLMKKYGLLEKIK---NSNLPILGTCAGMV-LLSKG   84 (186)
T ss_dssp             TTCSEEEECCSCHHHHHHHHHHTTHHHHHH---TCCCCEEEETHHHH-HHSSC
T ss_pred             ccCCEEEECCCCchhhhhhhhccCHHHHHH---hcCCcEEEECHHHH-HHHHH
Confidence            47999999999432211 111223455555   77899999999876 67765

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}

Probab=96.87  E-value=0.0015  Score=52.25  Aligned_cols=59  Identities=12%  Similarity=0.053  Sum_probs=37.5

Q ss_pred             cccccCCCCCCccEEEEcCCccChhccccChHH-HHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           16 DALVSDCRDAVFDLIALPVCMPDATNLKESKVL-ETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        16 d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l-~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      +..++++...++|.||+|||..+... ...+.+ ..+++.+.+++++|.+||.|-+ +|+.+
T Consensus        40 ~~~~~~i~~~~~dgIIlsGGp~s~~~-~~~~~~~~~l~~~a~~~g~PvLGIC~G~Q-lLa~~   99 (556)
T 3uow_A           40 GVELKDIKDMNIKGVILSGGPYSVTE-AGSPHLKKEVFEYFLEKKIPIFGICYGMQ-EIAVQ   99 (556)
T ss_dssp             TCCGGGTTTSCEEEEEECCCSCCTTS-TTCCCCCHHHHHHHHHTTCCEEEETHHHH-HHHHH
T ss_pred             CCCHHHHhhcCCCEEEECCCCCcccc-cCCcchhHHHHHHhhhcCCCEEEECHHHH-HHHHH
Confidence            33455554447899999999543322 112222 2344556677999999999877 57764

>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=96.83  E-value=0.0006  Score=47.80  Aligned_cols=47  Identities=15%  Similarity=0.136  Sum_probs=36.4

Q ss_pred             CccEEEEcCCccChhc---cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhh
Q 045076           26 VFDLIALPVCMPDATN---LKESKVLETIVKKQASNGRLYAAVCASPAVALGS   75 (145)
Q Consensus        26 ~~D~liipGG~~~~~~---~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~   75 (145)
                      +.|.|++|||.  ...   ..+...+.+.|+++.++|+++.++|.|. .+|+.
T Consensus        79 ~ad~I~l~GG~--~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sAGa-~~l~~  128 (206)
T 3l4e_A           79 KNDFIYVTGGN--TFFLLQELKRTGADKLILEEIAAGKLYIGESAGA-VITSP  128 (206)
T ss_dssp             HSSEEEECCSC--HHHHHHHHHHHTHHHHHHHHHHTTCEEEEETHHH-HTTSS
T ss_pred             hCCEEEECCCC--HHHHHHHHHHCChHHHHHHHHHcCCeEEEECHHH-HHhcc
Confidence            68999999984  322   2345678889999999999999999974 45654

>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A

Probab=96.79  E-value=0.00051  Score=48.84  Aligned_cols=50  Identities=12%  Similarity=0.002  Sum_probs=36.4

Q ss_pred             CccEEEEcCCccC-hhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           26 VFDLIALPVCMPD-ATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        26 ~~D~liipGG~~~-~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      +.|.||+|||... .......-.+.+.|+++.++|+++.++|.|. .+|+..
T Consensus        79 ~ad~I~lpGG~~~~~~~~l~~~gl~~~l~~~~~~G~p~~G~sAG~-~~l~~~  129 (229)
T 1fy2_A           79 KAEIIIVGGGNTFQLLKESRERGLLAPMADRVKRGALYIGWSAGA-NLACPT  129 (229)
T ss_dssp             HCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHH-HHTSSB
T ss_pred             cCCEEEECCCcHHHHHHHHHHCChHHHHHHHHHcCCEEEEECHHH-Hhhccc
Confidence            6899999998421 1122344567888898889999999999974 467653

>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}

Probab=96.65  E-value=0.002  Score=46.98  Aligned_cols=45  Identities=13%  Similarity=-0.071  Sum_probs=35.1

Q ss_pred             CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhh
Q 045076           26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGS   75 (145)
Q Consensus        26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~   75 (145)
                      ++|.||+|||. +..   ..+...++++.+.+++++|.+||-|-+ +|+.
T Consensus        67 ~~dgiil~GG~-~~~---~~~~~~~~i~~~~~~~~PilGIC~G~Q-ll~~  111 (273)
T 2w7t_A           67 GCDGIFVPGGF-GNR---GVDGKCAAAQVARMNNIPYFGVXLGMQ-VAVI  111 (273)
T ss_dssp             TCSEEEECCCC-TTT---THHHHHHHHHHHHHHTCCEEEETHHHH-HHHH
T ss_pred             hCCEEEecCCC-CCc---CchhHHHHHHHHHHCCCcEEEECcCHH-HHHH
Confidence            78999999995 332   223577888888888999999999877 4654

>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}

Probab=96.60  E-value=0.0031  Score=46.92  Aligned_cols=57  Identities=16%  Similarity=0.088  Sum_probs=40.2

Q ss_pred             ccCCCCCCccEEEEcCCccChhcc---ccChHHHHHHHHHHHCCCeEEEEcchhHHHhhh
Q 045076           19 VSDCRDAVFDLIALPVCMPDATNL---KESKVLETIVKKQASNGRLYAAVCASPAVALGS   75 (145)
Q Consensus        19 ~~~~~~~~~D~liipGG~~~~~~~---~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~   75 (145)
                      +++++.++||.+||.|+.......   ..=+++.++++...++++++.+||-|..+++..
T Consensus       104 f~~~~~~~~DglIITGsP~~~~~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~~  163 (312)
T 2h2w_A          104 FSAVKDRKFDGFIITGAPVELLPFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLYY  163 (312)
T ss_dssp             GGGTTTCCEEEEEECCCSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHH
T ss_pred             cccccccCcCEEEECCCCCCCCCCccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHHH
Confidence            555555689999999994222111   112578888888888999999999987753554

>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A

Probab=96.34  E-value=0.0028  Score=46.94  Aligned_cols=57  Identities=14%  Similarity=0.151  Sum_probs=39.2

Q ss_pred             ccCCCCCCccEEEEcCCccChhcc---ccChHHHHHHHHHHHCCCeEEEEcchhHHHhhh
Q 045076           19 VSDCRDAVFDLIALPVCMPDATNL---KESKVLETIVKKQASNGRLYAAVCASPAVALGS   75 (145)
Q Consensus        19 ~~~~~~~~~D~liipGG~~~~~~~---~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~   75 (145)
                      +++++.++||.+||.|+..+....   ..=+++.++++...++++++.+||-|..+++..
T Consensus        92 f~~~~~~~~DglIITGap~~~~~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~~  151 (301)
T 2vdj_A           92 FRDIENEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYH  151 (301)
T ss_dssp             HHHHTTSCEEEEEECCCTTTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHH
T ss_pred             cccccccccCEEEECCCCCcCCCcccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHHH
Confidence            334344689999999994222111   112578888888888999999999987753554

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=96.28  E-value=0.0027  Score=50.75  Aligned_cols=50  Identities=12%  Similarity=0.089  Sum_probs=36.6

Q ss_pred             CCccEEEEcCCccChhcc---ccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATNL---KESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~---~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      +++|.||+||| +.+...   ..+..+.++|+++.+++++|.+||.|.+ +|+.+
T Consensus        43 ~~~DglILpGg-G~~~~~~~~l~~~~~~~~i~~~~~~g~PiLGIC~G~Q-lL~~a   95 (555)
T 1jvn_A           43 SGTSRLILPGV-GNYGHFVDNLFNRGFEKPIREYIESGKPIMGIXVGLQ-ALFAG   95 (555)
T ss_dssp             TTCSCEEEEEC-SCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEEEHHHH-TTEEE
T ss_pred             ccCCEEEECCC-CchHhHhhhhhhccHHHHHHHHHHcCCcEEEEchhhh-hhhhh
Confidence            47999999995 232211   1123467889999899999999999876 68775

>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*

Probab=96.26  E-value=0.0058  Score=49.73  Aligned_cols=50  Identities=20%  Similarity=0.327  Sum_probs=37.0

Q ss_pred             CCccEEEEcCCccChhccccC---hHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATNLKES---KVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~~~~---~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      .++|.|||+||..++... ..   +.+.++|+++.+.+++|.+||-|-+ +|+.+
T Consensus       485 ~~~DgIIlsGGPg~p~d~-~~p~i~~~~~lI~~a~~~~iPiLGIClG~Q-lLa~a  537 (645)
T 3r75_A          485 ARYDVVVMGPGPGDPSDA-GDPRIARLYAWLRHLIDEGKPFMAVCLSHQ-ILNAI  537 (645)
T ss_dssp             GGCSEEEECCCSSCTTCT-TSHHHHHHHHHHHHHHHHTCCEEEETHHHH-HHHHH
T ss_pred             cCCCEEEECCCCCChhhh-hhhhHHHHHHHHHHHHHCCCCEEEECHHHH-HHHHH
Confidence            479999999995444331 22   2467788888888999999999877 56654

>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}

Probab=96.20  E-value=0.0066  Score=48.13  Aligned_cols=47  Identities=6%  Similarity=-0.072  Sum_probs=37.0

Q ss_pred             CCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhh
Q 045076           24 DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGS   75 (145)
Q Consensus        24 ~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~   75 (145)
                      ..++|.|++|||.+ ..   ..+...++++.+.++++++.+||-|-+ +|+.
T Consensus       348 L~~~DgIIlpGG~G-~~---~~~g~i~~ir~a~~~~~PiLGIClG~Q-ll~v  394 (535)
T 3nva_A          348 LGNVNGIIVLPGFG-SR---GAEGKIKAIKYAREHNIPFLGICFGFQ-LSIV  394 (535)
T ss_dssp             TTSCSEEEECCCCS-ST---THHHHHHHHHHHHHHTCCEEEETHHHH-HHHH
T ss_pred             ccCCCEEEECCCCC-Cc---cHHHHHHHHHHHHHcCCcEEEECcchh-HHHH
Confidence            35899999999963 32   235678899999999999999999876 4554

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1

Probab=96.11  E-value=0.0048  Score=45.87  Aligned_cols=49  Identities=14%  Similarity=0.117  Sum_probs=32.9

Q ss_pred             CccEEEEcCCccChhccc---cChHHHHHHHHHHHCC--CeEEEEcchhHHHhhh
Q 045076           26 VFDLIALPVCMPDATNLK---ESKVLETIVKKQASNG--RLYAAVCASPAVALGS   75 (145)
Q Consensus        26 ~~D~liipGG~~~~~~~~---~~~~l~~~l~~~~~~~--~~v~aic~g~~~~La~   75 (145)
                      ++|.||||||..+.....   ....+.++++++.+++  ++|.+||-|-+ +|+.
T Consensus        86 ~~dglil~GG~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Q-ll~~  139 (315)
T 1l9x_A           86 SINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFE-ELSL  139 (315)
T ss_dssp             HSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHH-HHHH
T ss_pred             cCCEEEEeCCCcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHHH-HHHH
Confidence            689999999942322110   1135667777766554  99999999877 5664

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=96.02  E-value=0.011  Score=47.08  Aligned_cols=46  Identities=15%  Similarity=0.104  Sum_probs=36.1

Q ss_pred             CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhh
Q 045076           25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGS   75 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~   75 (145)
                      .++|.||+|||.+.+ .   .+...++++.+.++++++.+||-|-+ +|+.
T Consensus       342 ~~~DGIilsGGpg~~-~---~~g~~~~i~~a~~~~~PiLGIClG~Q-ll~v  387 (545)
T 1s1m_A          342 KGLDAILVPGGFGYR-G---VEGMITTARFARENNIPYLGICLGMQ-VALI  387 (545)
T ss_dssp             TTCSEEEECCCCSST-T---HHHHHHHHHHHHHTTCCEEEETHHHH-HHHH
T ss_pred             hcCCEEEECCCCCCc-c---chhhHHHHHHHHHCCCcEEEECChHH-HHHH
Confidence            479999999995432 2   25677888888888999999999877 4664

>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}

Probab=95.87  E-value=0.00036  Score=49.25  Aligned_cols=47  Identities=9%  Similarity=0.052  Sum_probs=27.0

Q ss_pred             CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      .+||.||||||...... ...+.   +.+...+++++|.+||.|.+ +|+.+
T Consensus        66 ~~~dglil~Gg~~~~~~-~~~~~---~~~~~~~~~~PilGIC~G~Q-ll~~~  112 (218)
T 2vpi_A           66 QGFRAIIISGGPNSVYA-EDAPW---FDPAIFTIGKPVLGICYGMQ-MMNKV  112 (218)
T ss_dssp             HTCSEEEEEC----------CCC---CCGGGGTSSCCEEEETHHHH-HHHHH
T ss_pred             cCCCEEEECCCCccccc-ccchh---HHHHHHHcCCCEEEEcHHHH-HHHHH
Confidence            36999999999432211 11111   22334567899999999877 57764

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=95.68  E-value=0.015  Score=46.44  Aligned_cols=46  Identities=9%  Similarity=-0.053  Sum_probs=35.5

Q ss_pred             CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhh
Q 045076           25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGS   75 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~   75 (145)
                      .++|.||||||++.+ .   .+..++.++.+.++++++.+||-|-+ +|+.
T Consensus       354 ~~~DGIILpGGfGd~-~---~~g~i~~ir~a~e~~iPiLGICLGmQ-lL~~  399 (550)
T 1vco_A          354 RDVSGILVPGGFGVR-G---IEGKVRAAQYARERKIPYLGICLGLQ-IAVI  399 (550)
T ss_dssp             TTCSCEEECCCCSST-T---HHHHHHHHHHHHHTTCCEEEETHHHH-HHHH
T ss_pred             hcCCEEEECCCCCCc-c---hhhhHHHHHHHHHCCCcEEEECcCHH-HHHH
Confidence            479999999995332 2   24567888888888999999999877 4554

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}

Probab=95.17  E-value=0.008  Score=47.76  Aligned_cols=56  Identities=14%  Similarity=-0.089  Sum_probs=33.1

Q ss_pred             cccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           16 DALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        16 d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      +...+++...++|.||+|||..+..    ++......+...+.+++|.+||.|-+ +|+.+
T Consensus        43 ~~~~~~i~~~~~dgIILsGGp~sv~----~~~~~~~~~~~~~~~~PvLGIC~G~Q-lla~~   98 (527)
T 3tqi_A           43 DIDEETIRDFNPHGIILSGGPETVT----LSHTLRAPAFIFEIGCPVLGICYGMQ-TMAYQ   98 (527)
T ss_dssp             TCCSSSSTTTCCSEEEECCCCC-------------CCCSTTTSSSCEEEETHHHH-HHHHH
T ss_pred             CCCHHHHHhcCCCEEEECCcCcccc----cCCChhhHHHHHhcCCCEEEEChHHH-HHHHH
Confidence            3344454433569999999953321    22222334455678999999999877 57754

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*

Probab=93.76  E-value=0.07  Score=36.41  Aligned_cols=45  Identities=7%  Similarity=0.073  Sum_probs=28.2

Q ss_pred             ccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           27 FDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        27 ~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      +|.+|+.||...+..   .....++++. .+++++|.+||-|-+ +|+.+
T Consensus        48 ~~~iil~gGpg~~~~---~~~~~~l~~~-~~~~~PilGIC~G~Q-ll~~~   92 (192)
T 1i1q_B           48 NPVLMLSPGPGVPSE---AGCMPELLTR-LRGKLPIIGICLGHQ-AIVEA   92 (192)
T ss_dssp             SEEEEECCCSSCGGG---STTHHHHHHH-HBTTBCEEEETHHHH-HHHHH
T ss_pred             CCeEEECCCCcCchh---CchHHHHHHH-HhcCCCEEEECcChH-HHHHH
Confidence            344777777434332   2233444443 567899999999877 57764

>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}

Probab=93.12  E-value=0.059  Score=39.61  Aligned_cols=47  Identities=19%  Similarity=0.150  Sum_probs=36.9

Q ss_pred             CccEEEEcCCccChhc---cccChHHHHHHHHHHHCC-CeEEEEcchhHHHhhh
Q 045076           26 VFDLIALPVCMPDATN---LKESKVLETIVKKQASNG-RLYAAVCASPAVALGS   75 (145)
Q Consensus        26 ~~D~liipGG~~~~~~---~~~~~~l~~~l~~~~~~~-~~v~aic~g~~~~La~   75 (145)
                      +.|+|+|+||.  ...   ....-.+.+.|++.+++| .++++.|+| +.+++.
T Consensus       110 ~ad~I~v~GGn--t~~l~~~l~~t~l~~~L~~~~~~G~~~~~GtSAG-A~i~~~  160 (291)
T 3en0_A          110 QCTGIFMTGGD--QLRLCGLLADTPLMDRIRQRVHNGEISLAGTSAG-AAVMGH  160 (291)
T ss_dssp             HCSEEEECCSC--HHHHHHHHTTCHHHHHHHHHHHTTSSEEEEETHH-HHTTSS
T ss_pred             cCCEEEECCCC--HHHHHHHHHhCCHHHHHHHHHHCCCeEEEEeCHH-HHhhhH
Confidence            68999999994  333   345678889999999999 899999996 546653

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*

Probab=92.09  E-value=0.031  Score=44.10  Aligned_cols=46  Identities=11%  Similarity=0.001  Sum_probs=29.5

Q ss_pred             CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++|.||+|||..+... ...+.+   .+...+.+++|.+||-|-+ +|+.+
T Consensus        42 ~~dgiIlsGGp~s~~~-~~~~~~---~~~~~~~~~PvLGIC~G~Q-lla~~   87 (503)
T 2ywb_A           42 RPQALILSGGPRSVFD-PDAPRP---DPRLFSSGLPLLGICYGMQ-LLAQE   87 (503)
T ss_dssp             CCSEEEECCCSSCSSC-TTCCCC---CGGGGCSSCCEEEETHHHH-HHHHT
T ss_pred             CCCEEEECCCCchhcc-CCCcch---HHHHHhCCCCEEEECHHHH-HHHHH
Confidence            4699999999533221 111211   1334567999999999877 57764

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1

Probab=91.93  E-value=0.05  Score=43.15  Aligned_cols=46  Identities=15%  Similarity=-0.013  Sum_probs=29.6

Q ss_pred             CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++|.||+|||..+... ...+.+   .+...+.+++|.+||-|-+ +|+.+
T Consensus        50 ~~dgiILsGGp~s~~~-~~~~~~---~~~~~~~g~PvLGIC~G~Q-lla~~   95 (525)
T 1gpm_A           50 NPSGIILSGGPESTTE-ENSPRA---PQYVFEAGVPVFGVCYGMQ-TMAMQ   95 (525)
T ss_dssp             CCSEEEECCCSSCTTS-TTCCCC---CGGGGTSSSCEEEETHHHH-HHHHH
T ss_pred             CCCEEEECCcCccccc-cCCcch---HHHHHHCCCCEEEEChHHH-HHHHH
Confidence            4599999999533322 111222   2334567999999999877 57754

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}

Probab=91.50  E-value=0.016  Score=47.58  Aligned_cols=47  Identities=9%  Similarity=0.059  Sum_probs=28.6

Q ss_pred             CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      .++|.||++||..+... ...+.+   .+...+.+++|.+||.|-+ +|+.+
T Consensus        71 ~~~dGIILsGGp~s~~~-~~~~~~---~~~i~~~g~PvLGIC~G~Q-lLa~~  117 (697)
T 2vxo_A           71 QGFRAIIISGGPNSVYA-EDAPWF---DPAIFTIGKPVLGICYGMQ-MMNKV  117 (697)
T ss_dssp             HTCSEEEEEECC--------CCCC---CGGGTTSSCCEEEEEHHHH-HHHHH
T ss_pred             cCCCEEEECCCCCcccC-ccchhH---HHHHHhCCCCEEEECHHHH-HHHHH
Confidence            36899999999532211 111111   1233567899999999877 57764

>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=87.85  E-value=0.24  Score=32.90  Aligned_cols=53  Identities=11%  Similarity=0.140  Sum_probs=39.4

Q ss_pred             CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076           26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK   80 (145)
Q Consensus        26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~   80 (145)
                      +.|+|+|-||.+-+..=...+.+.+++.+..+.++-|.++|- -. ++.++|..+
T Consensus        84 ~~D~vVllGGLAMPk~~v~~e~v~~li~ki~~~~~kiiGvCF-ms-~F~kagW~~  136 (157)
T 2r47_A           84 NVDVLVLLGGLSMPGIGSDIEDVKKLVEDALEEGGELMGLCY-MD-MFARAGWYE  136 (157)
T ss_dssp             CEEEEEEEGGGGSTTTSCCHHHHHHHHHHHEEEEEEEEEEEE-TT-HHHHTTHHH
T ss_pred             CCCEEEEeccccCCCCCCCHHHHHHHHHHhhcCCCCEEEEEh-HH-HHHHcCCCc
Confidence            789999999975444334557888999988666667999998 34 578887543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	145
d2ab0a1	195	c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherich	4e-22
d1g2ia_	166	c.23.16.2 (A:) Intracellular protease {Archaeon Py	1e-19
d2fexa1	188	c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {	1e-19
d1u9ca_	221	c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothe	2e-18
d1oi4a1	170	c.23.16.2 (A:23-192) Hypothetical protein YhbO {Es	1e-17
d1p5fa_	186	c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId:	3e-17
d1n57a_	279	c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia col	1e-16
d1sy7a1	184	c.23.16.3 (A:553-736) Catalase, C-terminal domain	1e-15
d1qvwa_	236	c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Bake	3e-15
d1vhqa_	217	c.23.16.2 (A:) Putative sigma cross-reacting prote	2e-10

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

 Score = 85.2 bits (210), Expect = 4e-22
 Identities = 41/145 (28%), Positives = 75/145 (51%)

Query: 1   KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGR 60
             L +    GVK++ADA + +  D  +D+I LP  +  A   ++S +L   VK+   +GR
Sbjct: 40  GNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGR 99

Query: 61  LYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGT 120
           + AA+CA+PA  L    +      T +P+  +++                K++T++GPGT
Sbjct: 100 IVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGT 159

Query: 121 TMEFAVALVEQLYRKGKADEVSGPL 145
            ++F + +++ L  + KA EV+  L
Sbjct: 160 AIDFGLKIIDLLVGREKAHEVASQL 184

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 77.9 bits (191), Expect = 1e-19
 Identities = 28/128 (21%), Positives = 44/128 (34%), Gaps = 2/128 (1%)

Query: 5   VDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAA 64
           +   HG  +  D          FD + LP            K +    K  +    +   
Sbjct: 40  ITGKHGYSVKVDLTFDKVNPEEFDALVLPGGRAPERVRLNEKAVSIARKMFSEGKPVA-- 97

Query: 65  VCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEF 124
                   L S G+L+G K T YP   + +  A    V++ V  DG  V++R P     +
Sbjct: 98  SICHGPQILISAGVLRGRKGTSYPGIKDDMINAGVEWVDAEVVVDGNWVSSRVPADLYAW 157

Query: 125 AVALVEQL 132
               V+ L
Sbjct: 158 MREFVKLL 165

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 78.2 bits (192), Expect = 1e-19
 Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 8/138 (5%)

Query: 5   VDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAA 64
           V +  G+K+  D           D + +P  +           L  +VK+     RL A 
Sbjct: 42  VTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWEKGTAAD--LGGLVKRFRDRDRLVAG 99

Query: 65  VCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATV----ESRVQQDGKVVTTRGPGT 120
           +CA+ +   G  G+L  +  T       +  PA         + R   DG VVT  G   
Sbjct: 100 ICAAASAL-GGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGS-A 157

Query: 121 TMEFAVALVEQLYRKGKA 138
            + FAV +++ L   G  
Sbjct: 158 PVSFAVEILKSLGLFGPE 175

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 75.6 bits (185), Expect = 2e-18
 Identities = 28/157 (17%), Positives = 55/157 (35%), Gaps = 25/157 (15%)

Query: 4   RVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYA 63
              A     +   A +S      FD I LP       +  +++ L+ ++++ A +GR+ A
Sbjct: 64  PSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIA 123

Query: 64  AVCASPAVAL-----GSWGLLKGLKATCYPSFMEQLAPA--------------------C 98
           AVC  P+  +         ++KG   T +    E+                         
Sbjct: 124 AVCHGPSGLVNATYKDGTPIVKGKTVTSFTDEEEREVGLDVHMPFLLESTLRLRGANFVR 183

Query: 99  AATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRK 135
                    +DG ++T + P ++   A  +V  L  +
Sbjct: 184 GGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEER 220

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

 Score = 72.9 bits (178), Expect = 1e-17
 Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 3/129 (2%)

Query: 5   VDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAA 64
                   +  D  + +   A FD + LP        L+      T  +   ++G+   A
Sbjct: 43  KGKKGEASVTIDKSIDEVTPAEFDALLLP-GGHSPDYLRGDNRFVTFTRDFVNSGKPVFA 101

Query: 65  VCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTME 123
           +C  P + L S  +++G K T     +  +  A A    +  V    ++VT+R P     
Sbjct: 102 ICHGPQL-LISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPA 160

Query: 124 FAVALVEQL 132
           F    +  L
Sbjct: 161 FNREALRLL 169

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (175), Expect = 3e-17
 Identities = 49/143 (34%), Positives = 75/143 (52%), Gaps = 3/143 (2%)

Query: 5   VDACHGVKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYA 63
           V     V I  DA + D + +  +D++ LP     A NL ES  ++ I+K+Q +   L A
Sbjct: 42  VQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIA 101

Query: 64  AVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQ-QDGKVVTTRGPGTTM 122
           A+CA P   L +  +  G K T +P   +++      T       +DG ++T+RGPGT+ 
Sbjct: 102 AICAGPTALL-AHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSF 160

Query: 123 EFAVALVEQLYRKGKADEVSGPL 145
           EFA+A+VE L  K  A +V  PL
Sbjct: 161 EFALAIVEALNGKEVAAQVKAPL 183

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]} Length = 279

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

 Score = 72.0 bits (176), Expect = 1e-16
 Identities = 25/147 (17%), Positives = 46/147 (31%), Gaps = 26/147 (17%)

Query: 12  KIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAV 71
           K +AD + S   D+ +  I +P        L ES+ +   ++    N R   ++C  PA 
Sbjct: 127 KKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAA 186

Query: 72  ---ALGSWGLLKGLKATCYPSFMEQLAPA-----------------------CAATVESR 105
                     L G     +P   ++  P                            +  R
Sbjct: 187 FLALRHGDNPLNGYSICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGR 246

Query: 106 VQQDGKVVTTRGPGTTMEFAVALVEQL 132
           V +D K++T   P           +++
Sbjct: 247 VHKDRKLLTGDSPFAANALGKLAAQEM 273

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]} Length = 184

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

 Score = 68.0 bits (165), Expect = 1e-15
 Identities = 16/123 (13%), Positives = 37/123 (30%), Gaps = 1/123 (0%)

Query: 8   CHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67
            +G  +     +   R  + D I +P     A  L ++      +++   + +   A   
Sbjct: 46  ANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETLSKNGRALHWIREAFGHLKAIGATGE 105

Query: 68  SPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVA 127
           +  + +     L  +  +      E         V+     D   +     G   EF  A
Sbjct: 106 AVDL-VAKAIALPQVTVSSEAEVHESYGVVTLKKVKPESFTDAVKIAKGAAGFLGEFFYA 164

Query: 128 LVE 130
           + +
Sbjct: 165 IAQ 167

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 236

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.9 bits (165), Expect = 3e-15
 Identities = 26/158 (16%), Positives = 49/158 (31%), Gaps = 31/158 (19%)

Query: 6   DACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAV 65
           D+     +       +     + +           +  ++K L+ I  +  +NG + AAV
Sbjct: 77  DSDFNKTLAKIKTPKEVNADDYQIFMASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAV 136

Query: 66  CASPAVALGSW------GLLKGLKATCYPSFMEQLAP----------------------- 96
           C  PA+  G         L++G   T +    E +                         
Sbjct: 137 CHGPAMFDGLTDKKTGRPLIEGKSITGFTDVGETIMGVDSILKAKNLATVEDVAKKYGAK 196

Query: 97  --ACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQL 132
             A     +     DG++VT   P +    AV  ++ L
Sbjct: 197 YLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDAL 234

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

 Score = 54.7 bits (131), Expect = 2e-10
 Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 15/126 (11%)

Query: 5   VDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKV----------LETIVKK 54
           +     +       ++    A  D + +P     A NL               L+ + + 
Sbjct: 64  LIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQA 123

Query: 55  QASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATV-----ESRVQQD 109
               G+    +C +PA+    +     L         E L    A  V     +  V +D
Sbjct: 124 MHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTAEVLEEMGAEHVPCPVDDIVVDED 183

Query: 110 GKVVTT 115
            K+VTT
Sbjct: 184 NKIVTT 189

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	145
d2ab0a1	195	Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]	100.0
d1p5fa_	186	DJ-1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g2ia_	166	Intracellular protease {Archaeon Pyrococcus horiko	100.0
d2fexa1	188	Hypothetical protein Atu0886 {Agrobacterium tumefa	99.98
d1oi4a1	170	Hypothetical protein YhbO {Escherichia coli [TaxId	99.98
d1sy7a1	184	Catalase, C-terminal domain {Neurospora crassa [Ta	99.95
d1u9ca_	221	GK2698 ortholog {Bacillus stearothermophilus [TaxI	99.95
d1qvwa_	236	Hypothetical protein Ydr533Cp {Baker's yeast (Sacc	99.94
d1n57a_	279	HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}	99.91
d1vhqa_	217	Putative sigma cross-reacting protein 27A (SCRP-27	99.82
d1p80a1	156	Catalase, C-terminal domain {Escherichia coli, HPI	99.7
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	98.02
d2nv0a1	195	Hypothetical protein YaaE {Bacillus subtilis [TaxI	97.87
d1o1ya_	230	Hypothetical protein TM1158 {Thermotoga maritima [	97.63
d1jvna2	232	GAT subunit, HisH, (or domain) of imidazoleglycero	97.54
d1k9vf_	200	GAT subunit, HisH, (or domain) of imidazoleglycero	97.53
d2a9va1	196	GMP synthase subunit A, GuaAA {Archaeon Thermoplas	97.53
d1t3ta2	262	FGAM synthase PurL, amidotransferase domain {Salmo	97.36
d2abwa1	218	Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p	97.22
d1a9xb2	228	Carbamoyl phosphate synthetase, small subunit C-te	96.99
d1wl8a1	188	GMP synthase subunit A, GuaAA {Archaeon Pyrococcus	96.13
d1qdlb_	195	Anthranilate synthase GAT subunit, TrpG {Archaeon	96.0
d2ghra1	281	Homoserine O-succinyltransferase HTS (MetA) {Bacil	95.87
d1ka9h_	195	GAT subunit, HisH, (or domain) of imidazoleglycero	95.79
d1s1ma1	258	CTP synthase PyrG, C-terminal domain {Escherichia	95.75
d1vcoa1	250	CTP synthase PyrG, C-terminal domain {Thermus ther	94.88
d1i7qb_	192	Anthranilate synthase GAT subunit, TrpG {Serratia	93.75
d1gpma2	205	GMP synthetase {Escherichia coli [TaxId: 562]}	92.66
d1l9xa_	288	gamma-glutamyl hydrolase {Human (Homo sapiens) [Ta	89.13
d1fyea_	229	Aspartyl dipeptidase PepE {Salmonella typhimurium	88.06

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.1e-38  Score=220.44  Aligned_cols=142  Identities=30%  Similarity=0.555  Sum_probs=130.9

Q ss_pred             CCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCC
Q 045076            2 QLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKG   81 (145)
Q Consensus         2 ~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g   81 (145)
                      +.+|++++|+++.+|..+++++..+||+|+||||..++..+.+++.+.+|||++++++++|+++|+|++++|+++|||+|
T Consensus        41 ~~~v~~~~G~~v~~d~~~~d~~~~d~D~liiPGG~~~~~~l~~~~~l~~~lr~~~~~gk~i~aiC~g~a~lLa~aGlL~g  120 (195)
T d2ab0a1          41 NLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPI  120 (195)
T ss_dssp             CCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTTTSSSS
T ss_pred             CceEEeCCCcEeecCcChHHcCcccceEEEEccccCccccccccHHHHHHHHHHhhccceeeeeeccchhhhhhcCccCC
Confidence            35899999999999999999988899999999997556777889999999999999999999999987788999999999


Q ss_pred             ceeecCcchhhhhcccCceeccccEEEeCC--eEecCCcchHHHHHHHHHHHhcChhHHHHHhCCC
Q 045076           82 LKATCYPSFMEQLAPACAATVESRVQQDGK--VVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL  145 (145)
Q Consensus        82 ~~~t~~~~~~~~l~~~~~~~~~~~~v~dg~--iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~~~  145 (145)
                      |++|+||.+.+.+.  +..|+++++|+|||  +|||+|+.++++|++++|++++|++.|+++++.|
T Consensus       121 ~~~T~~~~~~~~~~--~~~~~~~~vv~Dgn~~liTa~g~~a~~d~al~lie~l~g~e~A~~va~~l  184 (195)
T d2ab0a1         121 GNMTGFPTLKDKIP--AEQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQL  184 (195)
T ss_dssp             SCBCCCGGGGGGSC--TTTBCCCSEEEETTTTEEEECSGGGHHHHHHHHHHHHTCHHHHHHHHTTT
T ss_pred             CEEeccHHHhhhcc--cceEeecceEEECCCeEEECCCHHHHHHHHHHHHHHHcCHHHHHHHHHHh
Confidence            99999999988884  36678899999997  6999999999999999999999999999999986

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.8e-38  Score=217.27  Aligned_cols=142  Identities=37%  Similarity=0.521  Sum_probs=128.7

Q ss_pred             CeeeecCCCEEeccccccCCCC-CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCC
Q 045076            3 LRVDACHGVKIVADALVSDCRD-AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKG   81 (145)
Q Consensus         3 ~~v~~~~G~~i~~d~~~~~~~~-~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g   81 (145)
                      .+|++++|+.+.+|..+++++. ++||+|+||||..++..+.+++.+.+||+++++++++|+++|+|+ ++|+++|+|+|
T Consensus        40 ~~v~~~~g~~i~~d~~l~d~~~~~~~D~liipGG~~~~~~l~~~~~l~~~lr~~~~~~k~i~aiC~G~-~~La~aglL~g  118 (186)
T d1p5fa_          40 DPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP-TALLAHEIGFG  118 (186)
T ss_dssp             SCEECTTSCEECCSEEHHHHHHTCCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTH-HHHHHTTCSTT
T ss_pred             cceecCCCccccCccchhccCCcccccEEEEecCccccccccchHHHHHHHHHhhccccceeecccCc-chhhhcCCccc
Confidence            5899999999999999987653 489999999996556778889999999999999999999999975 68999999999


Q ss_pred             ceeecCcchhhhhcccCc-eeccccEEEeCCeEecCCcchHHHHHHHHHHHhcChhHHHHHhCCC
Q 045076           82 LKATCYPSFMEQLAPACA-ATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL  145 (145)
Q Consensus        82 ~~~t~~~~~~~~l~~~~~-~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~~~  145 (145)
                      +++|+||...+.+++.+. .+.++.+++|||+|||+|+.++++|++++|+++.|++.|+++++.|
T Consensus       119 ~~~T~~~~~~~~~~~~~~~~~~~~~vv~Dg~iiT~~g~~~~~d~al~li~~l~g~~~a~~va~~l  183 (186)
T d1p5fa_         119 SKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPL  183 (186)
T ss_dssp             CEECCCGGGHHHHTTTSCSEECCCSEEEETTEEEECSGGGHHHHHHHHHHHHHCHHHHHHHHGGG
T ss_pred             cccccchhHHHHHHhcCceEEecccEEecCCEEECCCccHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence            999999999999977653 3467889999999999999999999999999999999999999875

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=4.8e-36  Score=205.00  Aligned_cols=130  Identities=25%  Similarity=0.394  Sum_probs=121.4

Q ss_pred             CCCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076            1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK   80 (145)
Q Consensus         1 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~   80 (145)
                      ++++|++++|+.+.+|.+++++++.+||+|+||||. ++..+..++.+.+||+++++++++|+++|+|+ ++|+++|+|+
T Consensus        36 ~~~~V~~~~g~~i~~d~~~~~~~~~~~d~viipGg~-~~~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~-~~La~aGlL~  113 (166)
T d1g2ia_          36 ERGTITGKHGYSVKVDLTFDKVNPEEFDALVLPGGR-APERVRLNEKAVSIARKMFSEGKPVASICHGP-QILISAGVLR  113 (166)
T ss_dssp             SSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBS-HHHHHTTCHHHHHHHHHHHHTTCCEEEETTTT-HHHHHHTCCT
T ss_pred             CCceEeecCCcEEeccccHHHcCcccccEEEEeccc-chhhhccChHHHHHHHHHHhcCCeeeeccccc-hhhhhcCccc
Confidence            467999999999999999999988899999999995 56667789999999999999999999999975 5899999999


Q ss_pred             CceeecCcchhhhhcccCceeccccEEEeCCeEecCCcchHHHHHHHHHHHh
Q 045076           81 GLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQL  132 (145)
Q Consensus        81 g~~~t~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~  132 (145)
                      ||++|+||...+.+++.+..|+++++|.|||+|||+|+.++.+|++++|+.+
T Consensus       114 g~~~T~~~~~~~~l~~~g~~~~~~~vV~Dg~iiTs~g~~~~~~f~~~~i~~L  165 (166)
T d1g2ia_         114 GRKGTSYPGIKDDMINAGVEWVDAEVVVDGNWVSSRVPADLYAWMREFVKLL  165 (166)
T ss_dssp             TCEECCCGGGHHHHHHTTCEECCSSCEEETTEEEECSGGGHHHHHHHHHHHH
T ss_pred             CCccccCccHHHHHHHcCCeEcCCCEEEeCCEEECCCHHHHHHHHHHHHHhh
Confidence            9999999999999988888899999999999999999999999999999986

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.98  E-value=2e-32  Score=190.39  Aligned_cols=138  Identities=24%  Similarity=0.336  Sum_probs=115.8

Q ss_pred             CCCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076            1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK   80 (145)
Q Consensus         1 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~   80 (145)
                      |+++|++++|+++.||..++++++.+||+|+||||. +.. ...++.+++|||++++++++|+++|+|+ ++|+++|+|+
T Consensus        38 ~~~~V~s~~G~~v~~d~~l~~~~~~~~D~liipGG~-~~~-~~~~~~l~~~lr~~~~~~~~i~aiC~g~-~~La~aGlL~  114 (188)
T d2fexa1          38 DGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGL-SWE-KGTAADLGGLVKRFRDRDRLVAGICAAA-SALGGTGVLN  114 (188)
T ss_dssp             TSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBS-HHH-HTCCCCCHHHHHHHHHTTCEEEEETHHH-HHHHHTTTTT
T ss_pred             CCCcEEcCCCCEEeecCchHHCChhhccEEEecCCc-ccc-ccccHHHHHHHHHHHHhCCEEEEecchh-HHHHHcCccC
Confidence            578999999999999999999988899999999995 343 3567889999999999999999999975 6899999999


Q ss_pred             CceeecCcch-hhhhccc--Cceec-cccEEEeCCeEecCCcchHHHHHHHHHHHh--cChhHHHHHh
Q 045076           81 GLKATCYPSF-MEQLAPA--CAATV-ESRVQQDGKVVTTRGPGTTMEFAVALVEQL--YRKGKADEVS  142 (145)
Q Consensus        81 g~~~t~~~~~-~~~l~~~--~~~~~-~~~~v~dg~iiT~~g~~~~~~~~l~li~~~--~g~~~a~~va  142 (145)
                      |+++|+||.. .+.+...  +..+. +..+|.|||+|||+|+ +++||++++++++  +|++.++++.
T Consensus       115 g~~~T~~~~~~~~~~~~~~~~~~~~~~~~vV~DgnliTs~G~-aa~d~al~ii~~L~~~~~e~~~~~~  181 (188)
T d2fexa1         115 DVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGS-APVSFAVEILKSLGLFGPEAEAELQ  181 (188)
T ss_dssp             TSCBCCSCHHHHHTSTTCCCGGGBCCCSSCEEETTEEEECTT-CHHHHHHHHHHHTTCCSHHHHHHHG
T ss_pred             CcEEeccchHhhhhhhhcCCCceEEeCCEEEECCCEEECCCc-hHHHHHHHHHHHhcccCHHHHHHHH
Confidence            9999999653 3333322  23344 4568999999999985 6899999999997  6899888864

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=4.1e-32  Score=186.06  Aligned_cols=129  Identities=22%  Similarity=0.308  Sum_probs=116.8

Q ss_pred             CCeeeecCC-CEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076            2 QLRVDACHG-VKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK   80 (145)
Q Consensus         2 ~~~v~~~~G-~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~   80 (145)
                      +.+++++.| +++.+|.+++++.+++||+||||||+ ++..+..++.+++||+++++++++|+++|+|+. +|+++|+|+
T Consensus        39 ~~~v~~~~~~~~v~~d~~l~~~~~~~yDalivpGG~-~~~~l~~~~~~~~~i~~~~~~~k~i~aiC~g~~-~La~~glL~  116 (170)
T d1oi4a1          39 GKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGH-SPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQ-LLISADVIR  116 (170)
T ss_dssp             TCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBT-HHHHHTTSHHHHHHHHHHHHTTCCEEEETTTHH-HHHHHTCCT
T ss_pred             CceeeeeccCeEEecCCcHHHCChhhceEEEEccch-hhhhhccChHHHHHHHHHhhcCCeeeecccchH-HHhhhhhcc
Confidence            467888775 99999999999998899999999995 666788899999999999999999999999864 899999999


Q ss_pred             CceeecCcchhhhhcccCceeccccEE-EeCCeEecCCcchHHHHHHHHHHHh
Q 045076           81 GLKATCYPSFMEQLAPACAATVESRVQ-QDGKVVTTRGPGTTMEFAVALVEQL  132 (145)
Q Consensus        81 g~~~t~~~~~~~~l~~~~~~~~~~~~v-~dg~iiT~~g~~~~~~~~l~li~~~  132 (145)
                      ||++|+||....++++.|.+|.++++| .|||+||++|+.++.+|++++|+.+
T Consensus       117 g~~~T~~~~~~~~l~~~g~~~~~~~~VVdd~~liTs~g~~~~~~fa~~~i~~L  169 (170)
T d1oi4a1         117 GRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLL  169 (170)
T ss_dssp             TCEECCCGGGHHHHHHTTCEECCSSCEEETTTEEEESSGGGHHHHHHHHHHHH
T ss_pred             ccccccCchHHHHHHhCCCEEecCCEEEECCEEEECCChhhHHHHHHHHHHHh
Confidence            999999999999998888888887655 5678999999999999999999986

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

Probab=99.95  E-value=3.3e-29  Score=173.05  Aligned_cols=130  Identities=14%  Similarity=0.140  Sum_probs=116.8

Q ss_pred             CCCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076            1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK   80 (145)
Q Consensus         1 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~   80 (145)
                      ++++|+++.|+.+.++.++++.++.+||++++|||......+..++.+.+||+++++++++|+++|+| .++|+++|+|+
T Consensus        39 ~~~~v~~~~g~~v~~d~~~~~~~~~~~dalivpgg~~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~G-~~~La~aGlL~  117 (184)
T d1sy7a1          39 RRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETLSKNGRALHWIREAFGHLKAIGATGEA-VDLVAKAIALP  117 (184)
T ss_dssp             CSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTH-HHHHHHHHCCT
T ss_pred             cCCcccccccccccccccccccccccceEEEEeeccccccccccccchhHHHHHHHhcCCceEEechH-HHHHHHcCCCC
Confidence            36799999999999999999998889999999999655666788999999999999999999999997 56899999999


Q ss_pred             CceeecCcchhhhhcccCceeccccEEEeCCeEecCCcchHHHHHHHHHHH
Q 045076           81 GLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQ  131 (145)
Q Consensus        81 g~~~t~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~  131 (145)
                      ||++|+||...+++...+.+++++.++.||+++|++++....+|+.+|.+.
T Consensus       118 g~~~Tt~~~~~~~~~~~~~~~~~~~~v~dg~~it~~~~~~~~~f~~~i~~h  168 (184)
T d1sy7a1         118 QVTVSSEAEVHESYGVVTLKKVKPESFTDAVKIAKGAAGFLGEFFYAIAQH  168 (184)
T ss_dssp             TSCCCCSSSCEEETTEEEESSCCTTTTTSCCCCSTTCSSHHHHHHHHHHTC
T ss_pred             CceeccCcchhhhhccccceeccCceEeECCEEecCCHhHHHHHHHHHHHh
Confidence            999999999988886655667788899999999999999999998877654

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.95  E-value=8.3e-28  Score=170.65  Aligned_cols=121  Identities=25%  Similarity=0.323  Sum_probs=103.3

Q ss_pred             eccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc------cccCCceeecC
Q 045076           14 VADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW------GLLKGLKATCY   87 (145)
Q Consensus        14 ~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a------gll~g~~~t~~   87 (145)
                      ..+..++++++++||+||||||++++.++..++.+.++++++++++|+|++||+|++ +|..+      ++++||++|+|
T Consensus        74 ~~~~~l~~v~~~dYd~v~iPGG~g~~~~l~~~~~l~~li~~~~~~~k~iaAIChgp~-~l~~a~~~~g~~ll~Gk~~T~~  152 (221)
T d1u9ca_          74 KHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPS-GLVNATYKDGTPIVKGKTVTSF  152 (221)
T ss_dssp             TSBEECCGGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGG-GGTTCBCTTSCBTTTTCEECCS
T ss_pred             hCCCChhHCCHhHCCEEEeCCCCchhhcchhhHHHHHHHHHHHhccCcceeecccce-eeeccccCCCCceeCCceeecc
Confidence            345567777888999999999986677889999999999999999999999999987 67764      48999999999


Q ss_pred             cch---------------hhhhcccCceecc-----ccEEEeCCeEecCCcchHHHHHHHHHHHhcCh
Q 045076           88 PSF---------------MEQLAPACAATVE-----SRVQQDGKVVTTRGPGTTMEFAVALVEQLYRK  135 (145)
Q Consensus        88 ~~~---------------~~~l~~~~~~~~~-----~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~  135 (145)
                      |..               .+.+++.|+.|.+     ..+|+|||+||++++.++.+|++.+|+.+..+
T Consensus       153 p~~~e~~~~~~~~~p~~~~~~l~~~Ga~y~~~~~~~~~Vv~Dg~lITg~~p~sa~~fa~~~v~~L~~k  220 (221)
T d1u9ca_         153 TDEEEREVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEER  220 (221)
T ss_dssp             CHHHHHHHTCGGGSSSCHHHHHHHTTCEECCCSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHTT
T ss_pred             CCHHHhhcccccchhhhHHHHHHHCCCEEeecCCCCCCEEEECCEEECCChhhHHHHHHHHHHHHhcC
Confidence            864               3445666777764     34999999999999999999999999998654

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1e-26  Score=166.30  Aligned_cols=120  Identities=19%  Similarity=0.251  Sum_probs=102.2

Q ss_pred             EeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc-------cccCCceee
Q 045076           13 IVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW-------GLLKGLKAT   85 (145)
Q Consensus        13 i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a-------gll~g~~~t   85 (145)
                      +..+..++++++++||+|++|||++.+.++..++.+.++++++++++++|++||||++ +|+.+       ++++||++|
T Consensus        84 l~~~~~~~~v~~~~ydav~ipGG~g~~~dl~~~~~l~~li~~~~~~gk~vaAIChGp~-~L~~~~~~~~g~~ll~Gk~vT  162 (236)
T d1qvwa_          84 LAKIKTPKEVNADDYQIFMASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPA-MFDGLTDKKTGRPLIEGKSIT  162 (236)
T ss_dssp             HHTCBCGGGCCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGG-GGTTCBCTTTCSBTTTTCEEC
T ss_pred             HhcccChhhCCHhHCCEEEEeCCccchhcchhhhHHHHHHHHHHhcCCeEEEehhhHH-HHHHHhhcccccccccCceec
Confidence            3445677888888999999999987778899999999999999999999999999987 56554       699999999


Q ss_pred             cCcchh-------------------hhhcccCceecc------ccEEEeCCeEecCCcchHHHHHHHHHHHhc
Q 045076           86 CYPSFM-------------------EQLAPACAATVE------SRVQQDGKVVTTRGPGTTMEFAVALVEQLY  133 (145)
Q Consensus        86 ~~~~~~-------------------~~l~~~~~~~~~------~~~v~dg~iiT~~g~~~~~~~~l~li~~~~  133 (145)
                      +++..+                   +.+++.|+.|++      ..+|+|||+||++++.++.+++..+|+.+.
T Consensus       163 ~f~~~ee~~~~~~~~~~~~~~~~le~~l~~~Ga~~~~~~~~~~~~VVvDg~lITGqnP~Sa~~~a~~~v~~L~  235 (236)
T d1qvwa_         163 GFTDVGETIMGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDALK  235 (236)
T ss_dssp             CSCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHGGG
T ss_pred             cCCcHHHhhccccccccCCCcccHHHHHHHcCCEEeccCCCCCCCEEEeCCEEeCCChhhHHHHHHHHHHHhc
Confidence            997643                   445566777753      459999999999999999999999999864

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.3e-24  Score=157.96  Aligned_cols=111  Identities=20%  Similarity=0.311  Sum_probs=95.6

Q ss_pred             CCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc----cccCCceeecCcchh-------
Q 045076           23 RDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW----GLLKGLKATCYPSFM-------   91 (145)
Q Consensus        23 ~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a----gll~g~~~t~~~~~~-------   91 (145)
                      +.++||+||+|||++.+.++..++.+.++|+++++++++|++||||++. |..+    ++++||++|+++...       
T Consensus       138 ~~~dYdav~iPGGhG~~~dL~~~~~l~~ll~~~~~~gk~vaaICHGPa~-Ll~a~~g~~l~~Gk~vT~f~~~eE~~~~~~  216 (279)
T d1n57a_         138 ADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAA-FLALRHGDNPLNGYSICAFPDAADKQTPEI  216 (279)
T ss_dssp             TTCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGG-GGGGTTSCCTTTTCEECCCCGGGGGTTTTT
T ss_pred             ccccccEEEecCCccchhhhhHHHHHHHHHHHHHHcCCcceeccccchh-hhhcccCCcccCCeEEeecCCHHHhccchh
Confidence            4468999999999877888999999999999999999999999999985 5544    689999999998643       


Q ss_pred             ------------hhhcccCceeccc----cEEEeCCeEecCCcchHHHHHHHHHHHhcC
Q 045076           92 ------------EQLAPACAATVES----RVQQDGKVVTTRGPGTTMEFAVALVEQLYR  134 (145)
Q Consensus        92 ------------~~l~~~~~~~~~~----~~v~dg~iiT~~g~~~~~~~~l~li~~~~g  134 (145)
                                  +.+++.|+.|++.    .+++|||+||++++.++.+++..+++.+..
T Consensus       217 ~~~p~~~~~~le~~L~~~Ga~~~~~~~~~~Vv~D~~LITGqnP~Sa~~~a~~~v~~Ll~  275 (279)
T d1n57a_         217 GYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLA  275 (279)
T ss_dssp             TSSSSCCSSCHHHHHHHTTCEECCSSCSCCEEEETTEEEESSGGGHHHHHHHHHHHHHH
T ss_pred             ccCcccccccHHHHHHHcCCEEECCCCCCCEEEeCCEEeCCCcccHHHHHHHHHHHHHH
Confidence                        4466667777654    499999999999999999999999998763

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=7.5e-21  Score=133.96  Aligned_cols=101  Identities=21%  Similarity=0.184  Sum_probs=82.7

Q ss_pred             ccccccCCCCCCccEEEEcCCccChhccc----------cChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCCce-
Q 045076           15 ADALVSDCRDAVFDLIALPVCMPDATNLK----------ESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLK-   83 (145)
Q Consensus        15 ~d~~~~~~~~~~~D~liipGG~~~~~~~~----------~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~~-   83 (145)
                      .+..++++++++||+||||||+++..++.          .++.+.+++++|++++|+|++||+|++ +|++++.+.+++ 
T Consensus        74 ~~~~l~~v~~~~yDaliiPGG~g~~~~l~~~~~~~~~~~~~~~v~~li~~~~~~gk~iaaIC~gp~-~l~~~~~~~~~~~  152 (217)
T d1vhqa_          74 EIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPA-MLPKIFDFPLRLT  152 (217)
T ss_dssp             CCEEGGGCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGG-GHHHHCSSCCEEC
T ss_pred             ccCChHHCCHhHCCEEEecCCcccHHHHhhhhccccccccCHHHHHHHHHHHHcCCCEEEEChhHH-HHHHHhccCCCee
Confidence            44578888889999999999986655553          368999999999999999999999987 799998887774 


Q ss_pred             eecCcchhhhhcccCceeccc---cEEEe--CCeEecC
Q 045076           84 ATCYPSFMEQLAPACAATVES---RVQQD--GKVVTTR  116 (145)
Q Consensus        84 ~t~~~~~~~~l~~~~~~~~~~---~~v~d--g~iiT~~  116 (145)
                      +|.|+...+.+++.|+.|++.   .+++|  ||+||+.
T Consensus       153 ~~~~~~~~~~l~~~Ga~~v~~~~~~~vVD~dg~ivTsp  190 (217)
T d1vhqa_         153 IGTDIDTAEVLEEMGAEHVPCPVDDIVVDEDNKIVTTP  190 (217)
T ss_dssp             CCSCHHHHHHHHHTTCEECCCCTTCCEEETTTTEEEEC
T ss_pred             eccChhhHHHHHHcCCcEEeccCCeEEEecCCCEEccc
Confidence            455777889998888888763   34555  9999984

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

Probab=99.70  E-value=2.3e-17  Score=110.47  Aligned_cols=79  Identities=9%  Similarity=0.005  Sum_probs=71.5

Q ss_pred             CCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCC
Q 045076            2 QLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKG   81 (145)
Q Consensus         2 ~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g   81 (145)
                      .++|++++|..+.+|.++++.++.+||+|+||||. . ..+..++.+++||+++++++|+|+++|+|+. +|+.+|++++
T Consensus        40 ~~~v~~~~G~~i~~d~t~~~~~~~~yDaliiPGG~-~-~~l~~~~~~~~~i~e~~~~~K~I~aic~g~~-~La~agl~~~  116 (156)
T d1p80a1          40 MGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCGN-I-ADIADNGDANYYLMEAYKHLKPIALAGDARK-FKATIKIADQ  116 (156)
T ss_dssp             SSEEECTTSCEEECCEETTTSCGGGCSEEEECCSC-T-HHHHTCHHHHHHHHHHHHTTCCEEEEGGGGG-GGGTTTCCSS
T ss_pred             cccccccceeEEeeeeeeccCCcccCCEEEeeCCc-h-HHHhcchHHHHHHHHHHHcCCeEEEECchHH-HHHHcCCCcC
Confidence            46899999999999999999988899999999994 3 4578999999999999999999999999865 8999999987


Q ss_pred             ce
Q 045076           82 LK   83 (145)
Q Consensus        82 ~~   83 (145)
                      +.
T Consensus       117 ~~  118 (156)
T d1p80a1         117 GE  118 (156)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.02  E-value=1.6e-06  Score=59.00  Aligned_cols=63  Identities=21%  Similarity=0.190  Sum_probs=42.9

Q ss_pred             CCEEeccccccCCCCCCccEEEEcCCccCh-hccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhh
Q 045076           10 GVKIVADALVSDCRDAVFDLIALPVCMPDA-TNLKESKVLETIVKKQASNGRLYAAVCASPAVALGS   75 (145)
Q Consensus        10 G~~i~~d~~~~~~~~~~~D~liipGG~~~~-~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~   75 (145)
                      |.....-...++++  ++|.||||||..+. ........+.++|+++.++++++.+||.|-+ +|+.
T Consensus        29 G~~~~~v~~~~~l~--~~D~lIlPGG~~~~~~~~l~~~~l~~~I~~~~~~gkPiLGIClG~Q-ll~~   92 (202)
T d1q7ra_          29 GAEAVIVKKSEQLE--GLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAGLI-LLAK   92 (202)
T ss_dssp             TCEEEEECSGGGGT--TCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETTHHH-HHEE
T ss_pred             CCcEEEECCHHHHh--cCCEEEECCCCcHHHHHHhhhhHHHHHHhhhccccceeeeeehhhH-Hhhh
Confidence            44433222334444  89999999994221 1122345678899999999999999999866 5765

>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus subtilis [TaxId: 1423]

Probab=97.87  E-value=3.7e-06  Score=56.81  Aligned_cols=64  Identities=16%  Similarity=0.132  Sum_probs=43.1

Q ss_pred             CCEEeccccccCCCCCCccEEEEcCCccCh-hccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           10 GVKIVADALVSDCRDAVFDLIALPVCMPDA-TNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        10 G~~i~~d~~~~~~~~~~~D~liipGG~~~~-~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      |..+..-...++++  ++|.||||||.... ..+.+...+.++|+++.++++++.+||.|-+ +|++.
T Consensus        24 G~~~~~i~~~~~l~--~~D~lIlPGG~~~~~~~~~~~~~~~~~I~~~~~~g~pilGIC~G~Q-ll~~~   88 (195)
T d2nv0a1          24 GAAGLVVKRPEQLN--EVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLI-ILAKE   88 (195)
T ss_dssp             TCEEEEECSGGGGG--GCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHH-HHSBC
T ss_pred             CCcEEEECCHHHHh--hCCEEEECCCCccHHHHHhhhchhcchhhhhhhhcceeeeccccHH-HHHhh
Confidence            44433323334443  89999999984221 2223445677889999999999999999866 67763

>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein TM1158
species: Thermotoga maritima [TaxId: 2336]

Probab=97.63  E-value=2.9e-05  Score=53.67  Aligned_cols=51  Identities=12%  Similarity=0.084  Sum_probs=38.7

Q ss_pred             CCccEEEEcCCccChhcc---ccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPVCMPDATNL---KESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~---~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++||.|||+||..+...-   .....+.++|++..+++++|.+||-|.. +|+.+
T Consensus        47 ~~~d~iii~Ggp~~~~d~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Q-lla~a  100 (230)
T d1o1ya_          47 EEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQ-MLAKV  100 (230)
T ss_dssp             GGCSEEEECCCSCCTTCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHHH-HHHHH
T ss_pred             hhCCEEEEcCCCcccccchhhhhhHHHHHHHHHHHHhcceEEEeecCHH-HHHHH
Confidence            479999999995443221   1234677899999999999999999887 57765

>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=97.53  E-value=2.1e-05  Score=52.96  Aligned_cols=50  Identities=22%  Similarity=0.278  Sum_probs=36.5

Q ss_pred             CCccEEEEcC-CccC--hhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           25 AVFDLIALPV-CMPD--ATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        25 ~~~D~liipG-G~~~--~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ..+|.||+|| |..+  +..+ ++..+.+.|+++.+++++|.+||.|-+ +|+..
T Consensus        41 ~~~D~lIlPG~G~f~~~~~~l-~~~~~~~~i~~~~~~~~PiLGIClG~Q-lL~~~   93 (200)
T d1k9vf_          41 DLYDLLFIPGVGHFGEGMRRL-RENDLIDFVRKHVEDERYVVGVCLGMQ-LLFEE   93 (200)
T ss_dssp             CCCSEEEECCCSCHHHHHHHH-HHTTCHHHHHHHHHTTCEEEEETHHHH-TTEEE
T ss_pred             hccCeEEEcChHHHHHHHHhh-hcccccccccccccccceEEEEeccee-EEeee
Confidence            4799999999 5211  1222 334677889999999999999999866 67753

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.53  E-value=6.9e-05  Score=50.31  Aligned_cols=56  Identities=16%  Similarity=0.156  Sum_probs=38.4

Q ss_pred             cccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           16 DALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        16 d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      |....+.  .+||.||++||.++...  ..+.+..+++...++++++.+||-|-+ +|+.+
T Consensus        34 d~~~~~~--~~~dgiIl~Gg~~~~~~--~~~~~~~l~~~~~~~~~PilGIC~G~Q-ll~~~   89 (196)
T d2a9va1          34 DIDSSEL--DGLDGLVLSGGAPNIDE--ELDKLGSVGKYIDDHNYPILGICVGAQ-FIALH   89 (196)
T ss_dssp             TSCGGGG--TTCSEEEEEEECSCGGG--TGGGHHHHHHHHHHCCSCEEEETHHHH-HHHHH
T ss_pred             CCCHHHH--hcCCcEEEecccccccc--ccchhhhHHHHHhhcCceEEEeehhhh-hhhhc
Confidence            4444444  48999999998543332  233455666666678999999999877 57764

>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: FGAM synthase PurL, amidotransferase domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.36  E-value=0.00019  Score=50.46  Aligned_cols=58  Identities=12%  Similarity=0.059  Sum_probs=39.5

Q ss_pred             CCCCccEEEEcCCccChhccc----------cChHHHHHHHHHHH-CCCeEEEEcchhHHHhhhcc-ccCC
Q 045076           23 RDAVFDLIALPVCMPDATNLK----------ESKVLETIVKKQAS-NGRLYAAVCASPAVALGSWG-LLKG   81 (145)
Q Consensus        23 ~~~~~D~liipGG~~~~~~~~----------~~~~l~~~l~~~~~-~~~~v~aic~g~~~~La~ag-ll~g   81 (145)
                      +..+||+|++|||..--+.+.          .+..+...+.++.. .+++|.+||+|-+ +|.+.| |+.|
T Consensus        48 ~L~~~~~lvipGGFSygD~l~ag~~~a~~~~~~~~~~~~~~~f~~~~~~~iLGICNGfQ-iL~elg~l~pg  117 (262)
T d1t3ta2          48 GLGNFHALVACGGFSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQ-MMSNLRELIPG  117 (262)
T ss_dssp             CGGGCSEEEECCBCGGGGTTSTTHHHHHHHHHSHHHHHHHHHHHHSSSCEEEEETHHHH-HHHTTGGGSTT
T ss_pred             cccccceEEEeccccccccccchhHHHhhhhhhhHHHHHHHHHhhcCCceEEeechHHH-HHHHhcccCCC
Confidence            456899999999974222222          24445555566554 6899999999876 788875 5544

>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Pyridoxine biosynthesis protein 2, Pdx2
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.22  E-value=7.4e-05  Score=50.66  Aligned_cols=55  Identities=18%  Similarity=0.086  Sum_probs=34.1

Q ss_pred             cccCCCCCCccEEEEcCCccChh----ccccChHHHHHHHH-HHHCCCeEEEEcchhHHHhhhc
Q 045076           18 LVSDCRDAVFDLIALPVCMPDAT----NLKESKVLETIVKK-QASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        18 ~~~~~~~~~~D~liipGG~~~~~----~~~~~~~l~~~l~~-~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ..++++  ++|.||||||. +..    .+.....+.+.|.+ ...++++|.+||.|-+ +|+..
T Consensus        36 ~~~~l~--~~D~lIlPGgg-~~~~~~~~~~~~~~~~~~i~~~~~~~gkPilGIC~G~Q-lL~~~   95 (218)
T d2abwa1          36 NVHDLG--LCDGLVIPGGE-STTVRRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCI-LLSKN   95 (218)
T ss_dssp             SHHHHH--TCSEEEECCSC-HHHHHHHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHH-HTEEE
T ss_pred             CHHHHh--hCCEEEEcCCC-ccHHHHHHHHHhccchHHHHHHHHHcCCeEEEecHHHH-HHHHh
Confidence            444444  79999999972 221    11222333343444 4457999999999876 67653

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.00041  Score=47.68  Aligned_cols=58  Identities=17%  Similarity=0.039  Sum_probs=43.0

Q ss_pred             ccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           15 ADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        15 ~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      .+.+.+++...++|.||+.+|.+.+.   +.....+.++++.+.+.+|.+||-|-+ +|+.+
T Consensus        69 ~~~~~~~i~~~~pdgivlS~GPg~P~---~~~~~~~~~~~~~~~~iPILGIClG~Q-lia~~  126 (228)
T d1a9xb2          69 AQTSAEDVLKMNPDGIFLSNGPGDPA---PCDYAITAIQKFLETDIPVFGICLGHQ-LLALA  126 (228)
T ss_dssp             TTCCHHHHHTTCCSEEEECCCSBCST---TCHHHHHHHHHHTTSCCCEEEETHHHH-HHHHH
T ss_pred             CCCCHHHHHhcCCCEEEEeCCCCccc---cchhHHHHHHHHHhCCCCEEEEEcChH-HHHHH
Confidence            34444555555799999999954443   455677888888888999999999877 57764

>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.13  E-value=0.0014  Score=43.15  Aligned_cols=56  Identities=5%  Similarity=0.051  Sum_probs=39.7

Q ss_pred             cccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           16 DALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        16 d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      +..+++++.-.+|.++++||. +.   ........++++..+.++++.+||-|-+ +|+.+
T Consensus        33 ~~~~~~~~~~~~~gvilsgg~-~~---~~~~~~~~~i~~~~~~~~PiLGIClG~Q-~l~~~   88 (188)
T d1wl8a1          33 TTPLEEIKAMNPKGIIFSGGP-SL---ENTGNCEKVLEHYDEFNVPILGICLGHQ-LIAKF   88 (188)
T ss_dssp             TCCHHHHHHTCCSEEEECCCS-CT---TCCTTHHHHHHTGGGTCSCEEEETHHHH-HHHHH
T ss_pred             CCCHHHHhhhccceeeeccCc-cc---ccccccccccccccccccceeehhhhhh-hhhhh
Confidence            334444443468999999983 33   2345567788888889999999999876 57653

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.00  E-value=0.0027  Score=42.00  Aligned_cols=49  Identities=16%  Similarity=0.067  Sum_probs=34.2

Q ss_pred             CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++|.+++.||..++.. ..+.....++.+....++++.+||-|-+ +|+.+
T Consensus        45 ~~~gvilsgGp~~~~~-~~~~~~~~~i~~~~~~~~PiLGIClG~Q-ll~~~   93 (195)
T d1qdlb_          45 DPDRLIISPGPGTPEK-REDIGVSLDVIKYLGKRTPILGVCLGHQ-AIGYA   93 (195)
T ss_dssp             CCSEEEECCCSSCTTS-HHHHTTHHHHHHHHTTTSCEEEETHHHH-HHHHH
T ss_pred             CCCccccCCCCCcccc-ccccccchhhhhhhcCCCCEEEeehhhh-hhhhc
Confidence            5799999999544433 2222344556667788999999999877 57754

>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: HTS-like
domain: Homoserine O-succinyltransferase HTS (MetA)
species: Bacillus cereus [TaxId: 1396]

Probab=95.87  E-value=0.003  Score=44.56  Aligned_cols=56  Identities=14%  Similarity=0.130  Sum_probs=40.0

Q ss_pred             ccCCCCCCccEEEEcCCccChhcccc---ChHHHHHHHHHHHCCCeEEEEcchhHHHhhh
Q 045076           19 VSDCRDAVFDLIALPVCMPDATNLKE---SKVLETIVKKQASNGRLYAAVCASPAVALGS   75 (145)
Q Consensus        19 ~~~~~~~~~D~liipGG~~~~~~~~~---~~~l~~~l~~~~~~~~~v~aic~g~~~~La~   75 (145)
                      ++++....||++||.|+..+...+.+   =+++.++++...++.+.+.+||=|... ++.
T Consensus        76 ~~~i~~~~fDglIITGap~~~~~fedv~y~~eL~eii~~a~~~~~~~lgiCwGaQa-~~~  134 (281)
T d2ghra1          76 FRDIENEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQA-GLY  134 (281)
T ss_dssp             HHHHTTCCEEEEEECCCSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHH-HHH
T ss_pred             HHHhhcccCCEEEEeCCCCCcccccccccHHHHHHHHHHHHhcCCCeEEEcHHHHH-HHH
Confidence            34445567999999998433322222   268889999999999999999997654 443

>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=95.79  E-value=0.0052  Score=40.06  Aligned_cols=49  Identities=16%  Similarity=0.205  Sum_probs=35.1

Q ss_pred             CCccEEEEcCCccChhc---cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhh
Q 045076           25 AVFDLIALPVCMPDATN---LKESKVLETIVKKQASNGRLYAAVCASPAVALGS   75 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~---~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~   75 (145)
                      +++|.+|+||+ +....   ......+...+.+....++++.++|.|.. +|+.
T Consensus        37 ~~~d~lIlpG~-g~~~~~~~~~~~~~~~~~~~~~~~~g~pilGiClG~q-ll~~   88 (195)
T d1ka9h_          37 EEADLLVLPGQ-GHFGQVMRAFQESGFVERVRRHLERGLPFLGICVGMQ-VLYE   88 (195)
T ss_dssp             SSCSEEEECCC-SCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECTHHHH-TTSS
T ss_pred             HHHhhhhcCCC-ccccchhhhccccCCcccccccccccchhhhhhhhhh-eeee
Confidence            38999999998 33322   22333455677788889999999999755 6764

>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.0082  Score=41.64  Aligned_cols=44  Identities=18%  Similarity=0.192  Sum_probs=35.4

Q ss_pred             CCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHH
Q 045076           24 DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAV   71 (145)
Q Consensus        24 ~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~   71 (145)
                      ..++|.|+||||+ +.   +.-+-.+..++-+..++.|..+||-|-++
T Consensus        55 L~~~dGIlvPGGF-G~---RG~eGki~ai~yARen~iPfLGIClGmQ~   98 (258)
T d1s1ma1          55 LKGLDAILVPGGF-GY---RGVEGMITTARFARENNIPYLGICLGMQV   98 (258)
T ss_dssp             TTTCSEEEECCCC-SS---TTHHHHHHHHHHHHHTTCCEEEETHHHHH
T ss_pred             ccccccEEeeccc-Cc---CCHHHHHHHHHHHHHcCccHHHHHHHHHH
Confidence            3589999999996 32   34566777888888999999999998664

>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.88  E-value=0.019  Score=39.53  Aligned_cols=43  Identities=9%  Similarity=0.074  Sum_probs=33.4

Q ss_pred             CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHH
Q 045076           25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAV   71 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~   71 (145)
                      .++|.|+||||. +.   +.-+--+.-++-+..++.+..+||-|-+.
T Consensus        57 ~~~dGIlvPGGF-G~---rG~eGki~ai~yARen~iPfLGIClGmQ~   99 (250)
T d1vcoa1          57 RDVSGILVPGGF-GV---RGIEGKVRAAQYARERKIPYLGICLGLQI   99 (250)
T ss_dssp             TTCSCEEECCCC-SS---TTHHHHHHHHHHHHHTTCCEEEETHHHHH
T ss_pred             hcCCeEEecCCC-Cc---cchHHHHHHHHHHHHcchhHHHHHHHHHH
Confidence            479999999996 32   23445666678888899999999998653

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

Probab=93.75  E-value=0.046  Score=35.80  Aligned_cols=46  Identities=7%  Similarity=-0.038  Sum_probs=32.1

Q ss_pred             CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      ++|.|++.||.+.+..    .....++++..++++++.+||-|-+ +|+.+
T Consensus        47 ~~~~iils~Gpg~~~~----~~~~~~i~~~l~~~iPiLGIClG~Q-~la~~   92 (192)
T d1i7qb_          47 EQPVLMLSPGPGTPSE----AGCMPELLQRLRGQLPIIGICLGHQ-AIVEA   92 (192)
T ss_dssp             SSEEEEECCCSSCGGG----STTHHHHHHHHBTTBCEEEETHHHH-HHHHH
T ss_pred             CCCeEEecCccccccc----cccchhhHHhhhcCccEEeeeHHHH-HHHHH
Confidence            6899999888433322    2223445667788999999999887 57764

>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthetase
species: Escherichia coli [TaxId: 562]

Probab=92.66  E-value=0.0083  Score=39.81  Aligned_cols=56  Identities=16%  Similarity=-0.007  Sum_probs=35.1

Q ss_pred             cccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076           16 DALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW   76 (145)
Q Consensus        16 d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a   76 (145)
                      |.+.++.....+|.+++.||...+...    ....++++....++++.+||-|-+ +|+.+
T Consensus        38 d~~~~~~~~~~~~giils~gp~~~~~~----~~~~~~~~~~~~~~PiLGIClG~Q-lla~~   93 (205)
T d1gpma2          38 DVTEAQIRDFNPSGIILSGGPESTTEE----NSPRAPQYVFEAGVPVFGVCYGMQ-TMAMQ   93 (205)
T ss_dssp             CCCHHHHHHHCCSEEEECCCSSCTTST----TCCCCCGGGGTSSSCEEEETHHHH-HHHHH
T ss_pred             CCCHHHHhhcCCCeEEecCCCCccchh----hhhhHHHHHHhCCCCEEEeccchh-hhhhh
Confidence            333333333468999999995333221    122234555678999999999877 57764

>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: gamma-glutamyl hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.13  E-value=0.23  Score=34.40  Aligned_cols=49  Identities=12%  Similarity=0.026  Sum_probs=28.0

Q ss_pred             CccEEEEcCCccChhcc--c-cChHHHHHHHHHHH--CCCeEEEEcchhHHHhhh
Q 045076           26 VFDLIALPVCMPDATNL--K-ESKVLETIVKKQAS--NGRLYAAVCASPAVALGS   75 (145)
Q Consensus        26 ~~D~liipGG~~~~~~~--~-~~~~l~~~l~~~~~--~~~~v~aic~g~~~~La~   75 (145)
                      ..|.|++|||.......  . ....+.++......  +..+|.+||-|-.+ |..
T Consensus        59 ~idGillpGG~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~PilGIC~G~Ql-l~~  112 (288)
T d1l9xa_          59 SINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEE-LSL  112 (288)
T ss_dssp             HSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHH-HHH
T ss_pred             hcCCeEecCCCCCcccccccccchHHHHHHHHHHHhhCCCCeEEEcHHHHH-HHH
Confidence            56999999994222111  1 11233333333333  44699999999884 543

>d1fyea_ c.23.16.4 (A:) Aspartyl dipeptidase PepE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Aspartyl dipeptidase PepE
domain: Aspartyl dipeptidase PepE
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.06  E-value=0.12  Score=34.76  Aligned_cols=48  Identities=17%  Similarity=0.124  Sum_probs=36.4

Q ss_pred             CCccEEEEcCCccChhcc---ccChHHHHHHHHHHHCCCeEEEEcchhHHHhhh
Q 045076           25 AVFDLIALPVCMPDATNL---KESKVLETIVKKQASNGRLYAAVCASPAVALGS   75 (145)
Q Consensus        25 ~~~D~liipGG~~~~~~~---~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~   75 (145)
                      .+.|+|++.||.  ...+   ...-.+.+.|++.+++|.++++..+| +.++..
T Consensus        78 ~~ad~I~v~GGn--~~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAG-A~v~~~  128 (229)
T d1fyea_          78 EKAEIIIVGGGN--TFQLLKESRERGLLAPMADRVKRGALYIGWSAG-ANLACP  128 (229)
T ss_dssp             HHCSEEEECCSC--HHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHH-HHHTSS
T ss_pred             hhCCEEEEcCCC--HHHHHHHHHhCCHHHHHHHHHHcCCeEEEeChh-HhhcCc
Confidence            368999999984  4332   34556778889999999999999996 556764