Citrus Sinensis ID: 045108

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-----
Protein Sequence
MSTSENSYSEAEALNLLAQLERILDLDPLIDEVGFIHPSQLATLKEEIGNSLSSEDKDHESTSFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQIPEYQGINIQEKLQAGAGDLMRMLKRSCPDRSSLWDYLVGYHSEP
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccccccccccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHccccHHHccEcccHHHHHHHHHccccccccccccccccEEEEcccccEcHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcHHHHcHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mstsensySEAEALNLLAQLERIldldplidevgfihpsqLATLKEEIgnslssedkdhestsfwirdhklgistqILIPVYKAAKHAFISALRqyktpgnfsgksqddTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVlshspkseqawSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQsrnwsglhvadnscfhYHRRLMIWNLEgfchiqdnnssgyfvETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLYLIKHIATHLlgvscqskpkasvdididslMDHELCLvhscsttipdanfedFQAQAIHSAAYMLWLTKqipeyqginiQEKLQAGAGDLMRMLkrscpdrsslWDYLVGYHSEP
Flexible Loop (DISEMBL)
MSTSENSYSEAEALNLLAQLERILDLDPLIDEVGFIHPSQLATLKEEIGNSLSSEDKDHESTSFWIRDHKLGISTQILIPVYKAAKHAFISALRQyktpgnfsgKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHspkseqawshrRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKqsrnwsglHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQIPEYQGINIQEKLQAGAGDLMRMLKRscpdrsslwdylvgyhsep
Low Complexity Region (SEG)
MSTSENSYSeaealnllaqleRILDLDPLIDEVGFIHPSQLATLKEEIGNSLSSEDKDHESTSFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQIPEYQGINIQEKLQAGAGDLMRMLKRSCPDRSSLWDYLVGYHSEP
Disordered region (IsUnstruct)
************ALNLLAQLERILDLDPLIDEVGFIHPSQLAT*******************SFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQIPEYQGINIQEKLQAGAGDLMRMLKRSCPDRSSLWDYLVGY****
Disordered Region (DISOPRED)
***************LLAQLERILDLDPLIDEVGFIHPSQLATLKEEI**********HESTSFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNFSG**Q**TVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEG*************VETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLYLIKHIATHLLG*********SVDIDIDSLMDHELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQI**************GAGDLMRMLKRSCPDRSSLWDYLVGYH***
Disordered Region (DISEMBL)
**********AEALNLLAQLERILDLDPLIDEVGFIHPSQLATLKEEIGN***********TSFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQIPEYQGINIQEKLQAGAGDLMRMLKRSCPDRSSLWDYLVGYHSEP
Disordered Region (DISPRO)
*********EAEALNLLAQLERILDLDPLIDEVGFIHPSQLATLKEEI**********HESTSFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQIPEYQGINIQEKLQAGAGDLMRMLKRSCPDRSSLWDYLVGYHS**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTSENSYSEAEALNLLAQLERILDLDPLIDEVGFIHPSQLATLKEEIGNSLSSEDKDHESTSFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQIPEYQGINIQEKLQAGAGDLMRMLKRSCPDRSSLWDYLVGYHSEP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	425	2.2.26 [Sep-21-2011]
A3KPW7	426	Protein prenyltransferase	yes	no	0.538	0.537	0.300	6e-22
Q7Z6K3	402	Protein prenyltransferase	yes	no	0.454	0.480	0.303	2e-21
Q0IHB3	432	Protein prenyltransferase	N/A	no	0.432	0.425	0.295	1e-20
A1L3L1	431	Protein prenyltransferase	N/A	no	0.635	0.626	0.26	6e-20
Q54RT9	322	Protein farnesyltransfera	no	no	0.390	0.515	0.235	5e-05
O93829	371	Geranylgeranyl transferas	N/A	no	0.256	0.293	0.278	6e-05
P93227	346	Protein farnesyltransfera	N/A	no	0.197	0.242	0.282	0.0008
P29702	375	Protein farnesyltransfera	no	no	0.28	0.317	0.272	0.0009

>sp|A3KPW7|PTAR1_DANRE Protein prenyltransferase alpha subunit repeat-containing protein 1 OS=Danio rerio GN=ptar1 PE=2 SV=1

 Score =  105 bits (262), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 123/276 (44%), Gaps = 47/276 (17%)

Query: 119 SKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVIN 178
           +  LLLL+ DF TAWN RK ++    L P    +L L  + LS  PKS + W HRRWV+ 
Sbjct: 91  TSTLLLLNPDFTTAWNVRKELLQCGVLNP--EKDLYLGKLALSKHPKSPETWIHRRWVLQ 148

Query: 179 MISRNCST-----------------LQWIIERESELVEKIAERSKMNYRAWNHRCWLVSF 221
            + + CS                  LQ  ++ E  +  + A R   NY AW+HR W++  
Sbjct: 149 RLQKECSPSGQELKDSAESRRQCERLQRALQEEMRVCAEAAGRYPSNYNAWSHRIWVLQN 208

Query: 222 MTRE--QVL-NELKQSRNWSGLHVADNSCFHYHRRLMIW-------------------NL 259
           M +   +VL +EL  +R W  +HV+D+S FHY + L+                     N 
Sbjct: 209 MAKGNLKVLHDELSSTRLWVSMHVSDHSGFHYRQHLLKALAKELSPAAEKDVHTSQQPNG 268

Query: 260 EGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLYLIKHIATH 319
           E      D+N     +   +++ EE+     LI+ Y G E LW HRR +     +    H
Sbjct: 269 ENTATASDDNHHKDVMP--RLFHEEIQLCTDLIESYPGHETLWCHRRHVFYLWHQWRREH 326

Query: 320 LLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTI 355
           + G   QS      D+    L+  ELC  +S S  +
Sbjct: 327 MQGAGSQSPALTHTDV----LLSKELCDNNSISQAM 358

Danio rerio (taxid: 7955)

>sp|Q7Z6K3|PTAR1_HUMAN Protein prenyltransferase alpha subunit repeat-containing protein 1 OS=Homo sapiens GN=PTAR1 PE=2 SV=2

 Score =  103 bits (257), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 116/237 (48%), Gaps = 44/237 (18%)

Query: 121 ALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMI 180
            LLLL+ DF TAWN RK ++ +  L PI   +L L  + L+  PKS + W HRRWV+  +
Sbjct: 93  TLLLLNPDFTTAWNVRKELILSGTLNPI--KDLHLGKLALTKFPKSPETWIHRRWVLQQL 150

Query: 181 SR-----------NCSTL-----QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR 224
            +           N  T+     Q +I+ E E+  + A R   NY AW+HR W++  + +
Sbjct: 151 IQETSLPSFVTKGNLGTIPTERAQRLIQEEMEVCGEAAGRYPSNYNAWSHRIWVLQHLAK 210

Query: 225 EQV---LNELKQSRNWSGLHVADNSCFHYHRRLM------------------IWNLEGFC 263
             V   L+EL  +++W+ +HV+D+S FHY + L+                  + +     
Sbjct: 211 LDVKILLDELSSTKHWASMHVSDHSGFHYRQFLLKSLISQTVIDSSVMEQNPLRSEPALV 270

Query: 264 HIQDNNSSGYFVETY----QVWKEELDWNESLIKRYVGREALWLHRRFLSLYLIKHI 316
             +D  ++    E       + +EE++++  LI  Y G E LW HRR +  YL  H+
Sbjct: 271 PPKDEEAAVSTEEPRINLPHLLEEEVEFSTDLIDSYPGHETLWCHRRHI-FYLQHHL 326

Homo sapiens (taxid: 9606)

>sp|Q0IHB3|PTR1A_XENLA Protein prenyltransferase alpha subunit repeat-containing protein 1-A OS=Xenopus laevis GN=ptar1-a PE=2 SV=1

 Score =  101 bits (252), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 107/227 (47%), Gaps = 43/227 (18%)

Query: 121 ALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVIN-- 178
            LLLL+ DF TAWN RK ++ +  L P+   +L+L  + L+  PKS + W HRRW +   
Sbjct: 93  TLLLLNPDFTTAWNVRKELIQSGTLNPV--KDLQLGKLALTKFPKSPETWIHRRWALQRL 150

Query: 179 --------------MISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR 224
                         +       +Q I+E E  +  + A R   NY +W+HR W+V  +  
Sbjct: 151 VQELVVAAVVDKDAICPETSERIQAIVEEEMHVCCEAAGRYPSNYNSWSHRIWVVQHLGN 210

Query: 225 EQ---VLNELKQSRNWSGLHVADNSCFHYHRRL--------------------MIWNLEG 261
            +   +++EL  +++W  +HV+D+S FHY + L                    +I N E 
Sbjct: 211 LKATLLIDELSSTKHWVSMHVSDHSGFHYRQFLLKSLLSKTLKDFDNVGAITDLIANEEN 270

Query: 262 FCHIQDN--NSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRR 306
            C  +D   N +    +   + +EE+D N  L+  + G E LW HRR
Sbjct: 271 LCLPRDGEANWNQICFDLPYLLEEEMDLNRELVDSFPGHETLWCHRR 317

Xenopus laevis (taxid: 8355)

>sp|A1L3L1|PTR1B_XENLA Protein prenyltransferase alpha subunit repeat-containing protein 1-B (Fragment) OS=Xenopus laevis GN=ptar1-b PE=2 SV=1

 Score = 99.0 bits (245), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 156/350 (44%), Gaps = 80/350 (22%)

Query: 27  DPLIDEVGFIHPSQLATLKEEIGNSLSSEDKDHESTSFWIRDHKLGIST---QILIPVYK 83
           +P IDE+G I P   AT               +  +   + ++KLG+ +   + L+P   
Sbjct: 25  NPNIDEIGLI-PCPEAT---------------YNRSPIVLVENKLGVESWCIKFLLPYV- 67

Query: 84  AAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNK 143
              H  +   RQ K   N     +D+ + +     +  LLLL+ DF TAWN RK ++ + 
Sbjct: 68  ---HNKLLLYRQKKLWLN-----RDELIDV-----TCTLLLLNPDFTTAWNVRKELIQSG 114

Query: 144 QLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISR------------NCST----L 187
            L P+   +L+L  + L+  PKS + W HRRWV+  + +             C      +
Sbjct: 115 TLNPV--KDLQLGKLALTKFPKSPETWIHRRWVLQRVVQELVVAAVVGKDATCPETYERI 172

Query: 188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQV---LNELKQSRNWSGLHVAD 244
           Q I++ E  +  + A R   NY +W+HR W++  +    V   ++EL  +++W  +HV+D
Sbjct: 173 QTIVQEEMHVCYEAAGRYPSNYNSWSHRIWVIQHLGNLNVKLLIDELSSTKHWVSMHVSD 232

Query: 245 NSCFHYHRRL--------------------MIWNLEGFCHIQDNNS--SGYFVETYQVWK 282
           +S FHY + L                    +I N +  C  ++  +  +    +   + +
Sbjct: 233 HSGFHYRQFLLKSLLCKTLKDSDNVTAVPDLIANEKNPCLPREGEAIWNQICFDLPYLLE 292

Query: 283 EELDWNESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKAS 332
           EE+  N  L+  Y G E LW HRR     + K I   LL  S  + P+++
Sbjct: 293 EEMKLNRELLDSYPGHETLWCHRR----QIFKLIHQLLLEQSQSATPQST 338

Xenopus laevis (taxid: 8355)

>sp|Q54RT9|FNTA_DICDI Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Dictyostelium discoideum GN=fntA PE=3 SV=1

 Score = 49.7 bits (117), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 86/191 (45%), Gaps = 25/191 (13%)

Query: 118 HSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVI 177
           H    +L S  F    N  + I+ +K+    ++D   L   V+  +P +   W +RR V+
Sbjct: 32  HPICPILYSEVFKDKMNYFRAILKSKEKSLRVLD---LLEEVIQENPSNYTIWYYRREVL 88

Query: 178 NMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNW 237
             I ++  T+++ I++E  L+  + E    NY+ WNHR     F+  + + ++ K+    
Sbjct: 89  KAIEQD-ETIEYDIQQEMNLLNDMGETDPKNYQIWNHR----RFIVEKYIGSDNKEKEFL 143

Query: 238 SGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVG 297
           SG+ + D   +H            + H Q      + ++TY+ W  EL   + L+     
Sbjct: 144 SGVLLEDAKNYH-----------AWSHRQ------WLLKTYRDWNGELAMVDKLLSLDHR 186

Query: 298 REALWLHRRFL 308
             ++W HR F+
Sbjct: 187 NNSVWNHRFFV 197

Catalyzes the transfer of a farnesyl or geranyl-geranyl moiety from farnesyl or geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. The alpha subunit is thought to participate in a stable complex with the substrate. The beta subunit binds the peptide substrate.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 9

>sp|O93829|PGTA_CANAX Geranylgeranyl transferase type-2 subunit alpha OS=Candida albicans GN=BET4 PE=3 SV=1

 Score = 48.9 bits (115), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 13/122 (10%)

Query: 114 EVMIHSKALLLLSCDFATAWNSRKLIVSNK---------QLLP-ILMDELRLSAVVLSHS 163
           E +I +  LL+++ +F T WN R+ I+ N          Q+   IL  +L    V L   
Sbjct: 48  EALIKTNELLIINPEFYTIWNYRREILINNYSSSNDKDDQIYEDILNQDLNFVLVQLKKF 107

Query: 164 PKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMT 223
           PK    W+HRRW++  + +    + W  + E  +V K+ +  + N+  W++R ++V  M 
Sbjct: 108 PKCYWIWNHRRWLLFELVK-LGKVNW--KYEFGVVSKLLDLDQRNFHGWHYRRFVVKNME 164

Query: 224 RE 225
            E
Sbjct: 165 LE 166

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to proteins having the C-terminal -XCC or -XCXC, where both cysteines may become modified. Acts on YPT1 and SEC4.

Candida albicans (taxid: 5476)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|P93227|FNTA_SOLLC Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Solanum lycopersicum GN=FTA PE=2 SV=1

 Score = 45.4 bits (106), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 8/92 (8%)

Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
           T W  R++++  + L   L +EL+    +   + K+ Q W HRRW+   +  +  T    
Sbjct: 79  TVWQFRRVVL--EALGVDLREELKFVDRIAGENTKNYQIWHHRRWLAEKLGADAVT---- 132

Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFM 222
              E E  +KI  +   NY AW+HR W++  +
Sbjct: 133 --NELEFTKKIFSQDAKNYHAWSHRQWVLQAL 162

Catalyzes the transfer of a farnesyl or geranyl-geranyl moiety from farnesyl or geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. The alpha subunit is thought to participate in a stable complex with the substrate. The beta subunit binds the peptide substrate.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 9

>sp|P29702|FNTA_BOVIN Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Bos taurus GN=FNTA PE=2 SV=2

 Score = 45.4 bits (106), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 13/132 (9%)

Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
           T W+ R++++  K L   L +E+   + ++   PK+ Q W HRR ++  + R+ S     
Sbjct: 128 TVWHFRRVLL--KSLQKDLHEEMNYISAIIEEQPKNYQVWHHRRVLVEWL-RDPS----- 179

Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHY 250
             +E E +  I  +   NY AW HR W++         NEL+         V +NS ++ 
Sbjct: 180 --QELEFIADILTQDAKNYHAWQHRQWVIQEFKLWD--NELQYVDQLLKEDVRNNSVWN- 234

Query: 251 HRRLMIWNLEGF 262
            R  +I N  G+
Sbjct: 235 QRYFVISNTTGY 246

Catalyzes the transfer of a farnesyl or geranyl-geranyl moiety from farnesyl or geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. The alpha subunit is thought to participate in a stable complex with the substrate. The beta subunit binds the peptide substrate. Through RAC1 prenylation and activation may positively regulate neuromuscular junction development downstream of MUSK.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	425
255561945	431	protein farnesyltransferase alpha subuni	0.971	0.958	0.603	1e-136
225453064	425	PREDICTED: uncharacterized protein LOC10	0.962	0.962	0.586	1e-132
302143621	480	unnamed protein product [Vitis vinifera]	0.981	0.868	0.581	1e-132
224125714	434	predicted protein [Populus trichocarpa]	0.948	0.928	0.597	1e-131
356523032	438	PREDICTED: uncharacterized protein LOC10	0.971	0.942	0.521	1e-114
356503264	433	PREDICTED: protein prenyltransferase alp	0.957	0.939	0.527	1e-114
52354113	420	hypothetical protein AT1G10095 [Arabidop	0.952	0.964	0.526	1e-111
79587734	420	protein prenylyltransferase [Arabidopsis	0.952	0.964	0.526	1e-111
449477812	425	PREDICTED: uncharacterized protein LOC10	0.950	0.950	0.517	1e-109
449470340	425	PREDICTED: uncharacterized protein LOC10	0.950	0.950	0.515	1e-109

>gi|255561945|ref|XP_002521981.1| protein farnesyltransferase alpha subunit, putative [Ricinus communis] gi|223538785|gb|EEF40385.1| protein farnesyltransferase alpha subunit, putative [Ricinus communis]

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 262/434 (60%), Positives = 320/434 (73%), Gaps = 21/434 (4%)

Query: 1   MSTSENSYSEAEALNLLAQLERILDLDPLIDEVGFIHPSQLATLKEEIGNS---LSSE-D 56
           MS +E+  +    + LL Q E ILD DPLIDEVGFIHPSQ   L  E+      LSS+ D
Sbjct: 1   MSENESVGNGKGGIGLLNQFELILDSDPLIDEVGFIHPSQFTALSSELQAKDAILSSKID 60

Query: 57  K----DHESTSFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTVA 112
           K    DHESTSFW RDHKLGIS  +++P+Y AAK AF++A++ +K   N S   +DD+  
Sbjct: 61  KVNVLDHESTSFWNRDHKLGISMHVILPLYTAAKDAFMNAIKGFKRVENLS--LEDDSCG 118

Query: 113 I-----EVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE 167
                 EVM HSKALLLLSCDF TAWNSRKLI+S KQ +P+ ++EL LSA+VLS+SPKSE
Sbjct: 119 FSSLESEVMKHSKALLLLSCDFGTAWNSRKLILSKKQYMPMFIEELLLSALVLSYSPKSE 178

Query: 168 QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQV 227
           Q+W HRRWVI MIS  CSTLQ I+ +ESELVEKIAERSKMNYRAWNHRCWLV +MTREQV
Sbjct: 179 QSWCHRRWVIKMISGKCSTLQEILGKESELVEKIAERSKMNYRAWNHRCWLVGYMTREQV 238

Query: 228 LNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDW 287
           L ELK+SR W+GLHVAD+SCFHY  RLM+  LE FC  QD+ SS + VE  Q+W+EEL W
Sbjct: 239 LLELKKSRYWAGLHVADSSCFHYRMRLMLRILEQFCCKQDDESSDHDVEICQMWQEELQW 298

Query: 288 NESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCL 347
           NE LI+ YVGREALWL+RRFLSL  I+H  + ++     S+ K+ V  +I+  +DHELCL
Sbjct: 299 NEELIELYVGREALWLYRRFLSLCWIRHFISDIIH---HSEHKSRVVANINEFLDHELCL 355

Query: 348 VHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQIPEYQGINIQEKLQAGAGDLMRMLKRS 407
           V+S S TIPD ++EDFQAQA+HSA Y+LWL KQIPE QGI +++KL   AG+   ML  +
Sbjct: 356 VNSWS-TIPDDDYEDFQAQAVHSATYILWLMKQIPESQGIELKKKL--NAGNWKTMLNVA 412

Query: 408 CPDRSSLWDYLVGY 421
           C +RSSLWD L  Y
Sbjct: 413 CAERSSLWDSLATY 426

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453064|ref|XP_002268977.1| PREDICTED: uncharacterized protein LOC100255283 [Vitis vinifera]

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 248/423 (58%), Positives = 311/423 (73%), Gaps = 14/423 (3%)

Query: 10  EAEALNLLAQLERILDLDPLIDEVGFIHPSQLATLKEEIGNSLSSED-----KDHESTSF 64
           E + ++LL QLE IL+ DPLIDEVGFIHPSQ   L EE G  L S +      +   +SF
Sbjct: 4   EEKGVDLLNQLEHILESDPLIDEVGFIHPSQFFILNEEAGGVLPSSNHHLLQSEDGISSF 63

Query: 65  WIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNFS---GKSQDDTVAI----EVMI 117
           W RDHKLGIS  IL+P+Y+AAK+AF++A+ QYK  GN S    KS D+ ++     EVM 
Sbjct: 64  WNRDHKLGISIDILLPLYRAAKNAFMAAIAQYKAHGNPSVKEEKSGDENISCHLESEVMK 123

Query: 118 HSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVI 177
           HS+ALLLLS DF TAWNSRKL++S KQ L + MDE  LSA+VLS+SPKSEQAWSHRRWVI
Sbjct: 124 HSRALLLLSSDFGTAWNSRKLVLSKKQDLSMFMDEFLLSALVLSYSPKSEQAWSHRRWVI 183

Query: 178 NMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNW 237
            MI+ N + LQ ++ +ESELVEKIAE+SKMNYRAWNHRCWLV +MT EQVL+EL +SR+W
Sbjct: 184 KMIAGNYTYLQEVLGKESELVEKIAEKSKMNYRAWNHRCWLVFYMTGEQVLHELDKSRSW 243

Query: 238 SGLHVADNSCFHYHRRLMIWNLEGFCHIQD-NNSSGYFVETYQVWKEELDWNESLIKRYV 296
           +GLHVADN CFHY RRLM+  LE  C+ QD N SSGY +E Y+VWKEELDWN+ LI+RY+
Sbjct: 244 AGLHVADNCCFHYRRRLMLRILECSCYKQDPNASSGYNIEIYRVWKEELDWNKMLIERYI 303

Query: 297 GREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIP 356
           GRE LWLHRRFLSL  IKH AT    +SC S+ K   + DI + +D+E+  VHSC   IP
Sbjct: 304 GREGLWLHRRFLSLCWIKHFATDGGDLSCHSELKTDANHDISNFLDNEIQYVHSC-LAIP 362

Query: 357 DANFEDFQAQAIHSAAYMLWLTKQIPEYQGINIQEKLQAGAGDLMRMLKRSCPDRSSLWD 416
             +FED + QA+ SA Y+LWLTKQ+ E +GI +Q+K     G+L  +LK+  P++S LWD
Sbjct: 363 SDDFEDVETQAVFSATYILWLTKQMYECEGIELQQKQLIRGGELKILLKKHRPEKSFLWD 422

Query: 417 YLV 419
            ++
Sbjct: 423 SII 425

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143621|emb|CBI22374.3| unnamed protein product [Vitis vinifera]

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 251/432 (58%), Positives = 315/432 (72%), Gaps = 15/432 (3%)

Query: 2   STSENSYSEAE-ALNLLAQLERILDLDPLIDEVGFIHPSQLATLKEEIGNSLSSED---- 56
           +T E   +E E  ++LL QLE IL+ DPLIDEVGFIHPSQ   L EE G  L S +    
Sbjct: 50  ATVEQKMTEEEKGVDLLNQLEHILESDPLIDEVGFIHPSQFFILNEEAGGVLPSSNHHLL 109

Query: 57  -KDHESTSFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNFS---GKSQDDTVA 112
             +   +SFW RDHKLGIS  IL+P+Y+AAK+AF++A+ QYK  GN S    KS D+ ++
Sbjct: 110 QSEDGISSFWNRDHKLGISIDILLPLYRAAKNAFMAAIAQYKAHGNPSVKEEKSGDENIS 169

Query: 113 I----EVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQ 168
                EVM HS+ALLLLS DF TAWNSRKL++S KQ L + MDE  LSA+VLS+SPKSEQ
Sbjct: 170 CHLESEVMKHSRALLLLSSDFGTAWNSRKLVLSKKQDLSMFMDEFLLSALVLSYSPKSEQ 229

Query: 169 AWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVL 228
           AWSHRRWVI MI+ N + LQ ++ +ESELVEKIAE+SKMNYRAWNHRCWLV +MT EQVL
Sbjct: 230 AWSHRRWVIKMIAGNYTYLQEVLGKESELVEKIAEKSKMNYRAWNHRCWLVFYMTGEQVL 289

Query: 229 NELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQD-NNSSGYFVETYQVWKEELDW 287
           +EL +SR+W+GLHVADN CFHY RRLM+  LE  C+ QD N SSGY +E Y+VWKEELDW
Sbjct: 290 HELDKSRSWAGLHVADNCCFHYRRRLMLRILECSCYKQDPNASSGYNIEIYRVWKEELDW 349

Query: 288 NESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCL 347
           N+ LI+RY+GRE LWLHRRFLSL  IKH AT    +SC S+ K   + DI + +D+E+  
Sbjct: 350 NKMLIERYIGREGLWLHRRFLSLCWIKHFATDGGDLSCHSELKTDANHDISNFLDNEIQY 409

Query: 348 VHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQIPEYQGINIQEKLQAGAGDLMRMLKRS 407
           VHSC   IP  +FED + QA+ SA Y+LWLTKQ+ E +GI +Q+K     G+L  +LK+ 
Sbjct: 410 VHSC-LAIPSDDFEDVETQAVFSATYILWLTKQMYECEGIELQQKQLIRGGELKILLKKH 468

Query: 408 CPDRSSLWDYLV 419
            P++S LWD ++
Sbjct: 469 RPEKSFLWDSII 480

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125714|ref|XP_002319657.1| predicted protein [Populus trichocarpa] gi|222858033|gb|EEE95580.1| predicted protein [Populus trichocarpa]

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 249/417 (59%), Positives = 303/417 (72%), Gaps = 14/417 (3%)

Query: 10  EAEALNLLAQLERILDLDPLIDEVGFIHPSQLATLKEEIGNSLSSEDKDHESTSFWIRDH 69
           +  +L+LL + E IL+ DPLIDEVGFIHPSQ  TL +E  +SL     +HE  +FW RDH
Sbjct: 9   KGNSLSLLNEFELILESDPLIDEVGFIHPSQFVTLNKEASSSL-----EHEDANFWSRDH 63

Query: 70  KLGISTQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDD-TVAIEVMIHSKALLLLSCD 128
           KL IST +L+P+YKA K  F+ A+ QYK   N S  S D+  +  EVM HSKALLLLSCD
Sbjct: 64  KLAISTDVLLPLYKAVKDVFMHAISQYKRHENLSDASWDEGNLESEVMKHSKALLLLSCD 123

Query: 129 FATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQ 188
           F TAWN RKLIVS KQ + I +DEL LSA+VLS+SPKSE+AW HRRWVI M++  CST+Q
Sbjct: 124 FGTAWNFRKLIVSKKQHMLIFLDELFLSALVLSYSPKSEKAWCHRRWVIKMVAGKCSTMQ 183

Query: 189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCF 248
            I+ +ESELVEKIAERSKMNYRAWNHRCWLVS+MT EQVL+ELK+SRNW+GLHVADNSCF
Sbjct: 184 DIVGKESELVEKIAERSKMNYRAWNHRCWLVSYMTTEQVLHELKKSRNWAGLHVADNSCF 243

Query: 249 HYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFL 308
           HY  RLM+   E  CH  ++ +S    E Y++W+EELDWNE+LIK YVGREALWLHRRFL
Sbjct: 244 HYRTRLMLRIREDHCHKLEDGTSDGNDEIYRIWQEELDWNEALIKCYVGREALWLHRRFL 303

Query: 309 SLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANFEDFQAQAI 368
           SL  I+H  T+L   S     K+ ++ DI   MD+EL L +SCS TIPD  FEDFQAQA+
Sbjct: 304 SLSWIRHFTTNLGDTSNYRVCKSRINADIGIFMDNELHLANSCS-TIPDNEFEDFQAQAL 362

Query: 369 HSAAYMLWLT-----KQIPEYQGINIQEKLQAGAGDLMRMLKRSCPDRSSLWDYLVG 420
           +SA Y+LWLT     +QI + QGI +QEK     G L  +L  +CP+RS L D   G
Sbjct: 363 YSATYILWLTTLFFHQQISDSQGIELQEK--PNLGSLKTVLNMACPERSFLSDISTG 417

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523032|ref|XP_003530146.1| PREDICTED: uncharacterized protein LOC100807426 [Glycine max]

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/441 (52%), Positives = 301/441 (68%), Gaps = 28/441 (6%)

Query: 4   SENSYSEAEALNLLAQLERILDLDPLIDEVGFIHPSQLATLKEEIGNS------------ 51
           SE S+S+ EA++LL QLE IL+ D LIDE+GFIHPSQ + LKEE   S            
Sbjct: 2   SEESHSKVEAMDLLRQLEDILESDALIDELGFIHPSQFSLLKEESDISSNLSDEAIHQSA 61

Query: 52  ----LSSEDKDHESTSFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNFSGK-- 105
               +S E    ++  FW RDHKLGIST +L+P+Y+AAKHAF++  +QY+   N S K  
Sbjct: 62  DRVVISEESSKQDNLYFWNRDHKLGISTHVLLPLYRAAKHAFMTTFKQYRMCDNQSDKDG 121

Query: 106 ------SQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVV 159
                 S  D +   +M HSK+LLLLSCDF TAWN RKLIVS K+ L + +DEL LS +V
Sbjct: 122 MCLPAFSSCDHLESILMRHSKSLLLLSCDFMTAWNCRKLIVSKKKKLSMFVDELLLSELV 181

Query: 160 LSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLV 219
           LS+SPKSEQAW+HRRWVI  IS NCS  + I+ +ESELVEKIAE SKMNYRAWNHRCWL+
Sbjct: 182 LSYSPKSEQAWNHRRWVIKSISANCSNFKEILGKESELVEKIAESSKMNYRAWNHRCWLI 241

Query: 220 SFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQ 279
           S+MT +QVL ELK+SR+W+ LHVADN CFHY RRL++  +E    +++  S G+  +  Q
Sbjct: 242 SYMTNKQVLYELKKSRSWAALHVADNCCFHYRRRLLLKFMENQNSVEETISCGHNADIVQ 301

Query: 280 VWKEELDWNESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDS 339
             K+ELDWNE+LIKRYVGREALWLHRRFLS+  I +        S  SK   S+  D  +
Sbjct: 302 ALKDELDWNEALIKRYVGREALWLHRRFLSMCWINNFLLDSGDASYHSKEAISMHHDFGT 361

Query: 340 LMDHELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQIPEYQGINIQEKLQAGAGD 399
            + +ELCL+H  S+T  D +F D QAQA++SA+Y+LWL  Q+P+     + +K++    D
Sbjct: 362 FLRNELCLLH--SSTFVDDDFVDVQAQAVYSASYILWLKVQVPKSLENKLLQKIK--DVD 417

Query: 400 LMRMLKRSCPDRSSLWDYLVG 420
           L  +L +SCP+RSSL++Y + 
Sbjct: 418 LKILLDKSCPERSSLFNYFMN 438

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503264|ref|XP_003520431.1| PREDICTED: protein prenyltransferase alpha subunit repeat-containing protein 1-like [Glycine max]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 233/442 (52%), Positives = 298/442 (67%), Gaps = 35/442 (7%)

Query: 4   SENSYSEAEALNLLAQLERILDLDPLIDEVGFIHPSQLATLKEEI--------------- 48
           SE S+S  EA++LL Q E IL+ D LIDE+GFIHPSQ A LKEE                
Sbjct: 2   SEESHSNVEAMDLLRQFEDILEFDALIDELGFIHPSQFALLKEESYISSNLSDEAIHQSA 61

Query: 49  -GNSLSSEDKDHESTSFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNFSGK-- 105
            G  +S E    ++  FW RDHKLGIST +L+P+Y+AAKH F++ L+QY+   N S K  
Sbjct: 62  DGVVISEESSKQDNLYFWNRDHKLGISTHVLLPLYRAAKHVFMTTLKQYRMCDNQSDKVG 121

Query: 106 -------SQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAV 158
                  S  D +   ++ HSK+LLLLSCDF TAWN RKLIVS K+L  + +DEL LS +
Sbjct: 122 ICLPASSSSCDHLESMLLRHSKSLLLLSCDFLTAWNCRKLIVSKKKL-SMFVDELLLSEL 180

Query: 159 VLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWL 218
           VLS+SPKSEQAW+HRRWVI  IS NCS    I+ +ESELVEKIAERSKMNYRAWNHRCWL
Sbjct: 181 VLSYSPKSEQAWNHRRWVIKSISANCSNFNEILGKESELVEKIAERSKMNYRAWNHRCWL 240

Query: 219 VSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETY 278
           +S+MT EQVL ELK+SR+W+ LHVADN CFHY RRL++  +E    +++  S G+  +  
Sbjct: 241 ISYMTIEQVLYELKKSRSWAALHVADNCCFHYRRRLLLKFMENQNSVEETVSYGHNADIV 300

Query: 279 QVWKEELDWNESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDID 338
           Q  K+ELDWNE+LIKRYVGREALWLHRRFLS++++          S  SK   S+  D  
Sbjct: 301 QALKDELDWNETLIKRYVGREALWLHRRFLSMWILDSG-----DASYHSKEAISMHHDFG 355

Query: 339 SLMDHELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQIPEYQGINIQEKLQAGAG 398
           + + +ELCL+HSCST + D  F D QAQA +SA Y+LWL  QI +     + EK++    
Sbjct: 356 TFLQNELCLLHSCSTFVDD--FVDVQAQAAYSACYILWLKVQIAKPLESKLLEKIK--DV 411

Query: 399 DLMRMLKRSCPDRSSLWDYLVG 420
           DL  +L +SCP+RSSL++Y + 
Sbjct: 412 DLKTLLDKSCPERSSLFNYFMN 433

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52354113|gb|AAU44377.1| hypothetical protein AT1G10095 [Arabidopsis thaliana]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/420 (52%), Positives = 287/420 (68%), Gaps = 15/420 (3%)

Query: 9   SEAEALNLLAQLERILDLDPLIDEVGFIHPSQLATLKEEIGNSLSSEDKDHESTSFWIRD 68
           SE +  +LL Q E +L+ DPLIDEVGFIHPSQ   L +E G S   +  +  S+ FW +D
Sbjct: 7   SEDDCFSLLKQFEHVLESDPLIDEVGFIHPSQFTMLDKEAGFSNEFQPNNGTSSKFWNQD 66

Query: 69  HKLGISTQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTVAI-------EVMIHSKA 121
           HKLGIST IL+ + K AKH F+ AL++YK+ GN   +SQ   ++        +VM HS++
Sbjct: 67  HKLGISTDILVQLCKDAKHVFLLALQEYKSHGNACDESQIKNISCSPCIPESDVMKHSQS 126

Query: 122 LLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMIS 181
           +LLLS DF TAWN+RKLI+S K  L    +ELRLS ++LS+SPKSE  WSHRRW+I MIS
Sbjct: 127 VLLLSSDFGTAWNARKLILSKKDHLSAFTEELRLSGLILSNSPKSESTWSHRRWIIKMIS 186

Query: 182 RNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLH 241
           ++ STLQ II +ESELVE I ERSKMNYRAW+HRCWLVS+MT EQV+ EL +S+ W+GLH
Sbjct: 187 QSFSTLQEIITKESELVESIGERSKMNYRAWHHRCWLVSYMTIEQVIQELNKSKRWAGLH 246

Query: 242 VADNSCFHYHRRLMIWNLEGFCHIQDNNSSGY-FVETYQVWKEELDWNESLIKRYVGREA 300
           VAD+SCFHY RRLM+  LE    +    SS Y   E  ++WKEELDWNE L++RYVGREA
Sbjct: 247 VADSSCFHYRRRLMLKILES---LYVKGSSAYDKTEARKIWKEELDWNEELVERYVGREA 303

Query: 301 LWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANF 360
           LWLHRRFLSL  I + A +    S ++     ++ +I   +D+E+ L+ S S T+PD  F
Sbjct: 304 LWLHRRFLSLNWIMYFACNHSDASPETGESIIMNEEIAIFIDNEIRLLDS-SMTVPDTKF 362

Query: 361 EDFQAQAIHSAAYMLWLTKQIPEYQGINIQEKLQAGAGDLMRMLKRSCPDRSSLWDYLVG 420
           EDFQAQA+H+A Y LWLTK IP    + ++EKL  G   +  +L     +R SL  +LV 
Sbjct: 363 EDFQAQALHAAVYTLWLTKSIPVLWRM-LEEKL--GTEKVKCVLNTIAQERPSLLHHLVN 419

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79587734|ref|NP_849630.3| protein prenylyltransferase [Arabidopsis thaliana] gi|3540189|gb|AAC34339.1| Hypothetical protein [Arabidopsis thaliana] gi|332190420|gb|AEE28541.1| protein prenylyltransferase [Arabidopsis thaliana]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/420 (52%), Positives = 286/420 (68%), Gaps = 15/420 (3%)

Query: 9   SEAEALNLLAQLERILDLDPLIDEVGFIHPSQLATLKEEIGNSLSSEDKDHESTSFWIRD 68
           SE +  +LL Q E +L+ DPLIDEVGFIHPSQ   L +E G S   +  +  S+ FW +D
Sbjct: 7   SEDDCFSLLKQFEHVLESDPLIDEVGFIHPSQFTMLDKEAGFSNEFQPNNGTSSKFWNQD 66

Query: 69  HKLGISTQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTVAI-------EVMIHSKA 121
           HKLGIST IL+ + K AKH F+ AL++YK+ GN   +SQ   ++        +VM HS++
Sbjct: 67  HKLGISTDILVQLCKDAKHVFLLALQEYKSHGNACDESQIKNISCSPCIPESDVMKHSQS 126

Query: 122 LLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMIS 181
           +LLLS DF TAWN+RKLI+S K  L    +ELRLS ++LS+SPKSE  WSHRRW+I MIS
Sbjct: 127 VLLLSSDFGTAWNARKLILSKKDHLSAFTEELRLSGLILSNSPKSESTWSHRRWIIKMIS 186

Query: 182 RNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLH 241
           ++ STLQ II +ESELVE I ERSKMNYRAW HRCWLVS+MT EQV+ EL +S+ W+GLH
Sbjct: 187 QSFSTLQEIITKESELVESIGERSKMNYRAWYHRCWLVSYMTIEQVIQELNKSKRWAGLH 246

Query: 242 VADNSCFHYHRRLMIWNLEGFCHIQDNNSSGY-FVETYQVWKEELDWNESLIKRYVGREA 300
           VAD+SCFHY RRLM+  LE    +    SS Y   E  ++WKEELDWNE L++RYVGREA
Sbjct: 247 VADSSCFHYRRRLMLKILES---LYVKGSSAYDKTEARKIWKEELDWNEELVERYVGREA 303

Query: 301 LWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANF 360
           LWLHRRFLSL  I + A +    S ++     ++ +I   +D+E+ L+ S S T+PD  F
Sbjct: 304 LWLHRRFLSLNWIMYFACNHSDASPETGESIIMNEEIAIFIDNEIRLLDS-SMTVPDTKF 362

Query: 361 EDFQAQAIHSAAYMLWLTKQIPEYQGINIQEKLQAGAGDLMRMLKRSCPDRSSLWDYLVG 420
           EDFQAQA+H+A Y LWLTK IP    + ++EKL  G   +  +L     +R SL  +LV 
Sbjct: 363 EDFQAQALHAAVYTLWLTKSIPVLWRM-LEEKL--GTEKVKCVLNTIAQERPSLLHHLVN 419

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477812|ref|XP_004155130.1| PREDICTED: uncharacterized protein LOC101225667 [Cucumis sativus]

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/429 (51%), Positives = 299/429 (69%), Gaps = 25/429 (5%)

Query: 4   SENSYSEAEALNLLAQLERILDLDPLIDEVGFIHPSQLATLKEEIGNS--LSSEDKDHES 61
           +EN+  +A+A +LL+Q E+IL  DPLIDE+GF+HPSQ   L EE+G+S   SSE   +E+
Sbjct: 2   AENTDVQAKATDLLSQFEQILQSDPLIDEIGFVHPSQFVKLNEELGSSKSASSEITGNEN 61

Query: 62  TSFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGN-----FSGKS------QDDT 110
           + FW++ HKLGISTQIL P+Y AA++ F++A R+Y++  N      +G S        + 
Sbjct: 62  SEFWLQHHKLGISTQILHPLYIAARNTFMAATRKYRSACNQDDQTMAGNSLCGLSNSLNI 121

Query: 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAW 170
           V  +VM HS+ALLLLSCDF TAWNSRK I+S KQ L + +DEL LS +VLS  PKSEQAW
Sbjct: 122 VESDVMKHSRALLLLSCDFGTAWNSRKFILSKKQNLSLYLDELLLSRLVLSFFPKSEQAW 181

Query: 171 SHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNE 230
           SHRRWVI ++     +++ I+++ESELVE+IAE SKMNYRAWNHR WLVS+M+REQ L E
Sbjct: 182 SHRRWVIKLLVEKGYSVEEILKKESELVERIAEMSKMNYRAWNHRRWLVSYMSREQALYE 241

Query: 231 LKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNES 290
           L ++R W+ LHVADN CFHY RRLM+  L      + N  SG  +  YQVWKEELDW+E 
Sbjct: 242 LNETRKWAALHVADNCCFHYRRRLMLKILAESSCAEIN--SGLTLGIYQVWKEELDWDEM 299

Query: 291 LIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHS 350
           LIKRY+GREALW+HRRFLS+  ++H AT+    +     +  + +DI   +++EL LV+S
Sbjct: 300 LIKRYIGREALWIHRRFLSVCWMRHFATN----NKIFNQEGGIKLDIPFFIENELNLVNS 355

Query: 351 CSTTIPDANFEDFQAQAIHSAAYMLWLTKQIPEYQGINIQEKLQAGAGDLMRMLKRSCPD 410
           CS  + + +FEDFQAQA  S AY+LWL K  P    + + +KL+    +L  +LK+ CP+
Sbjct: 356 CS-FLSNEDFEDFQAQATCSGAYLLWLIKNCP---NLKVDDKLR--TYNLNTLLKKVCPE 409

Query: 411 RSSLWDYLV 419
           R  LWD L+
Sbjct: 410 RYPLWDSLI 418

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470340|ref|XP_004152875.1| PREDICTED: uncharacterized protein LOC101220717 [Cucumis sativus]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/429 (51%), Positives = 297/429 (69%), Gaps = 25/429 (5%)

Query: 4   SENSYSEAEALNLLAQLERILDLDPLIDEVGFIHPSQLATLKEEIGNS--LSSEDKDHES 61
           +EN+  +A+A +LL+Q E+IL  DPLIDE+GF+HPSQ   L EE+G+S   SSE   +E+
Sbjct: 2   AENTDVQAKATDLLSQFEQILQSDPLIDEIGFVHPSQFVKLNEELGSSKSASSEITGNEN 61

Query: 62  TSFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGN-----FSGKS------QDDT 110
           + FW++ HKLGISTQIL P+Y AA++ F++A R+Y++  N      +G S        + 
Sbjct: 62  SEFWLQHHKLGISTQILHPLYIAARNTFMAATRKYRSSCNQDDQTMAGNSLCGLSNSLNI 121

Query: 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAW 170
           V  +VM HS+ALLLLSCDF TAWNSRK I+S KQ L + +DEL LS +VLS  PKSEQAW
Sbjct: 122 VESDVMKHSRALLLLSCDFGTAWNSRKFILSKKQNLSLYLDELLLSKLVLSFFPKSEQAW 181

Query: 171 SHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNE 230
           SHRRWVI ++     +++ I+++ESELVE+IAE SKMNYRAWNHR WLVS+M+REQ L E
Sbjct: 182 SHRRWVIKLLVEKGYSVEEILKKESELVERIAEMSKMNYRAWNHRRWLVSYMSREQALYE 241

Query: 231 LKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNES 290
           L ++R W+ LHVADN CFHY RRLM+  L      + N  SG  +  YQVWKEELDW+E 
Sbjct: 242 LNETRKWAALHVADNCCFHYRRRLMLKILAESSCAEIN--SGLTLGIYQVWKEELDWDEM 299

Query: 291 LIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHS 350
           LIKRY+GREALW+HRRFLS+  ++H AT     +     +  + +DI   +++EL LV+S
Sbjct: 300 LIKRYIGREALWIHRRFLSVCWMRHFATD----NKIFNQEGGIKLDIPFFIENELNLVNS 355

Query: 351 CSTTIPDANFEDFQAQAIHSAAYMLWLTKQIPEYQGINIQEKLQAGAGDLMRMLKRSCPD 410
           CS  + + +FEDFQ QA  S AY+LWL K  P    + + +KL+    +L  +LK+ CP+
Sbjct: 356 CS-FLSNEDFEDFQTQATCSGAYLLWLIKNCP---NLKVDDKLR--TYNLNTLLKKVCPE 409

Query: 411 RSSLWDYLV 419
           R  LWD L+
Sbjct: 410 RYPLWDSLI 418

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	425
TAIR|locus:1005716686	420	AT1G10095 [Arabidopsis thalian	0.917	0.928	0.530	9.5e-105
DICTYBASE|DDB_G0287077	406	DDB_G0287077 "protein prenyltr	0.887	0.928	0.245	4.4e-29
UNIPROTKB|F1P1Q8	208	PTAR1 "Uncharacterized protein	0.437	0.894	0.310	1.6e-18
FB|FBgn0027296	398	l(1)G0144 "lethal (1) G0144" [	0.454	0.484	0.296	5.1e-17
RGD|708369	425	Ptar1 "protein prenyltransfera	0.225	0.225	0.368	9.4e-15
UNIPROTKB|F1PEG1	402	PTAR1 "Uncharacterized protein	0.244	0.258	0.360	1.3e-14
UNIPROTKB|Q7Z6K3	402	PTAR1 "Protein prenyltransfera	0.244	0.258	0.352	1.6e-14
UNIPROTKB|J9P4Q0	429	PTAR1 "Uncharacterized protein	0.244	0.242	0.360	3.7e-14
UNIPROTKB|F1N382	432	Bt.90693 "Uncharacterized prot	0.385	0.379	0.295	4.8e-14
UNIPROTKB|G5E608	432	Bt.90693 "Uncharacterized prot	0.385	0.379	0.295	4.8e-14

TAIR|locus:1005716686 AT1G10095 [Arabidopsis thaliana (taxid:3702)]

 Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
 Identities = 215/405 (53%), Positives = 280/405 (69%)

Query:    23 ILDLDPLIDEVGFIHPSQLATLKEEIGNSLSSEDKDHESTSFWIRDHKLGISTQILIPVY 82
             +L+ DPLIDEVGFIHPSQ   L +E G S   +  +  S+ FW +DHKLGIST IL+ + 
Sbjct:    21 VLESDPLIDEVGFIHPSQFTMLDKEAGFSNEFQPNNGTSSKFWNQDHKLGISTDILVQLC 80

Query:    83 KAAKHAFISALRQYKTPGNFSGKSQDDTVAI-------EVMIHSKALLLLSCDFATAWNS 135
             K AKH F+ AL++YK+ GN   +SQ   ++        +VM HS+++LLLS DF TAWN+
Sbjct:    81 KDAKHVFLLALQEYKSHGNACDESQIKNISCSPCIPESDVMKHSQSVLLLSSDFGTAWNA 140

Query:   136 RKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERES 195
             RKLI+S K  L    +ELRLS ++LS+SPKSE  WSHRRW+I MIS++ STLQ II +ES
Sbjct:   141 RKLILSKKDHLSAFTEELRLSGLILSNSPKSESTWSHRRWIIKMISQSFSTLQEIITKES 200

Query:   196 ELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLM 255
             ELVE I ERSKMNYRAW HRCWLVS+MT EQV+ EL +S+ W+GLHVAD+SCFHY RRLM
Sbjct:   201 ELVESIGERSKMNYRAWYHRCWLVSYMTIEQVIQELNKSKRWAGLHVADSSCFHYRRRLM 260

Query:   256 IWNLEGFCHIQDNNSSGYF-VETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLYLIK 314
             +  LE   +++   SS Y   E  ++WKEELDWNE L++RYVGREALWLHRRFLSL  I 
Sbjct:   261 LKILESL-YVK--GSSAYDKTEARKIWKEELDWNEELVERYVGREALWLHRRFLSLNWIM 317

Query:   315 HIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANFEDFQAQAIHSAAYM 374
             + A +    S ++     ++ +I   +D+E+ L+ S S T+PD  FEDFQAQA+H+A Y 
Sbjct:   318 YFACNHSDASPETGESIIMNEEIAIFIDNEIRLLDS-SMTVPDTKFEDFQAQALHAAVYT 376

Query:   375 LWLTKQIPEYQGINIQEKLQAGAGDLMRMLKRSCPDRSSLWDYLV 419
             LWLTK IP    + ++EKL  G   +  +L     +R SL  +LV
Sbjct:   377 LWLTKSIPVLWRM-LEEKL--GTEKVKCVLNTIAQERPSLLHHLV 418

GO:0005634 "nucleus" evidence=ISM

GO:0008318 "protein prenyltransferase activity" evidence=IEA

GO:0018342 "protein prenylation" evidence=IEA

DICTYBASE|DDB_G0287077 DDB_G0287077 "protein prenyltransferase alpha subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 101/411 (24%), Positives = 210/411 (51%)

Query:    22 RILDLDPLIDEVG--FIHPSQLATLKEEIGNSLSSEDKDH-ESTSFWIRDHKLGISTQIL 78
             ++ +   L DE+   FI+  ++     EIG  +SS+D D  E+  F + ++KLGIS Q +
Sbjct:     7 KVQESKKLYDELNLIFINNPEI----NEIGFVMSSKDYDGLENKPFVLVENKLGISFQWM 62

Query:    79 IPVYKAAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKL 138
             I +Y  A   F      ++   N   +     +  E++  ++ +LL++ +  TA N RK 
Sbjct:    63 IKLYSYALTYFTELKSAFEKKMNDLPERHQQLLVNELLQATRNVLLINAENLTALNLRKE 122

Query:   139 IVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVI-NMISRNCSTLQWIIERESEL 197
             +++ K +     DE+ L  ++ +  PKS + W+HR+WVI +   +    L +  E E  +
Sbjct:   123 LINLKYIKH--KDEISLLNLIFTKHPKSGEGWAHRKWVITDYFKKTGDYLDY--EIELAV 178

Query:   198 VEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIW 257
              +++AE    NY +W HR W++  ++ + +L +L+   +W   +++D  C ++HR L++ 
Sbjct:   179 CKRVAEIYPKNYYSWTHRWWILQHLSVDIILKDLETMEDWVKRNISDY-CGYHHRYLILT 237

Query:   258 NLEGFCHIQ--DNNSS-------GYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFL 308
             +L   C+    DNN++          ++ +++W++E ++   +I  Y G E+ W ++R L
Sbjct:   238 HLFNKCYNSNDDNNNNESKSEENSNEMKIHKLWEDEFNFIHKIINLYPGHESSWSYKRVL 297

Query:   309 SLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANFEDFQAQAI 368
             +L+ ++ IA  ++      +   S  + I SL   E   V S    I D+++  ++ Q  
Sbjct:   298 TLFWLQ-IAQPIV-----FQRNISTTVPITSLQQ-ESQFVDSILEDI-DSSY--YEQQKS 347

Query:   369 HSAAYMLWLTK-QIPEYQGINIQ-EKLQAGAGDLMRMLKRSCPDRSSLWDY 417
              +  Y+L + + +  +    +I  ++++     ++  LK S P++  +W+Y
Sbjct:   348 FAQRYLLSIYELKFKDSADFSIDIDQVKNNYSIIINDLKISFPNQLKVWEY 398

GO:0018342 "protein prenylation" evidence=IEA

GO:0008318 "protein prenyltransferase activity" evidence=IEA

UNIPROTKB|F1P1Q8 PTAR1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 228 (85.3 bits), Expect = 1.6e-18, P = 1.6e-18
 Identities = 64/206 (31%), Positives = 110/206 (53%)

Query:    68 DHKLGIST---QILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHSKALLL 124
             ++KLG+ +   + L+P      H  +   RQ K   N    +Q  T  I+++  +  LLL
Sbjct:    18 ENKLGVESWCVKFLLPYV----HNKLLLYRQRKQWLNKD--AQGCTEIIKLIDTTCTLLL 71

Query:   125 LSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNC 184
             L+ DF TAWN RK ++ +  L P+   +L L  + L+  PKS + W HR ++   +S   
Sbjct:    72 LNPDFTTAWNVRKELILSGTLSPL--KDLHLGKLALTKFPKSPETWIHRFYLFFFLSHRD 129

Query:   185 STLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVAD 244
                    E E ++  + A R   NY AW+HR W++  + +  +L+EL  ++ W  +HV+D
Sbjct:   130 ------YEEEMDVCSEAAGRYPSNYNAWSHRIWVLQNVGKI-LLDELSSTKYWVSMHVSD 182

Query:   245 NSCFHYHRRLMIWNLEGFCHIQDNNS 270
             +S FHY R+ ++ +L G   + D+N+
Sbjct:   183 HSGFHY-RQFLLKSLIGRT-VNDDNT 206

GO:0008318 "protein prenyltransferase activity" evidence=IEA

GO:0018342 "protein prenylation" evidence=IEA

FB|FBgn0027296 l(1)G0144 "lethal (1) G0144" [Drosophila melanogaster (taxid:7227)]

 Score = 227 (85.0 bits), Expect = 5.1e-17, Sum P(2) = 5.1e-17
 Identities = 62/209 (29%), Positives = 107/209 (51%)

Query:    68 DHKLGISTQILIPVYKAAKHAFISALRQYKTPG--NFSGKSQDDTVAIEVMIHSKALLLL 125
             +H LG+ +     VY  A    IS  RQ           + Q D++A  + +     LL+
Sbjct:    50 EHNLGLESWCAQHVYDHAHRTLISHRRQTTAQQLRTLQQQQQSDSLAKYLNV----ALLI 105

Query:   126 SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCS 185
             + D  T W+ R+ +V   +L   +  EL+ SA+VLS  PKS +A+++RRW+ +   ++  
Sbjct:   106 NPDVTTFWHIRRQLVQKNRLS--INKELQFSALVLSIKPKSNEAFAYRRWLYSF--QSAD 161

Query:   186 TLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVL-NELKQSRNWSGLHVAD 244
              + W    E  + E+ A+R   NY AW+HR W++       +L +EL ++  +   H++D
Sbjct:   162 AIDW--PNEIGICERAADRCASNYHAWSHRQWILQ--NGPCLLQSELLRTEKFMRKHISD 217

Query:   245 NSCFHYHRRLMIWNLE-GFCHIQDNNSSG 272
              SC+HY + L+    E  F   +D+ +SG
Sbjct:   218 YSCYHYRQVLLSRAYELSFALPKDSGASG 246

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=ISS

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=ISS

GO:0018342 "protein prenylation" evidence=IEA

RGD|708369 Ptar1 "protein prenyltransferase alpha subunit repeat containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 178 (67.7 bits), Expect = 9.4e-15, Sum P(2) = 9.4e-15
 Identities = 42/114 (36%), Positives = 60/114 (52%)

Query:   122 LLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMIS 181
             LLLL+ DF TAWN RK ++ +  L P+   +L L  + L+  PKS + W HRRWV+  +S
Sbjct:    94 LLLLNPDFTTAWNVRKELILSGTLSPV--KDLHLGKLALTKFPKSPETWIHRRWVLQQLS 151

Query:   182 RNCST----------------LQWIIERESELVEKIAERSKMNYRAWNHRCWLV 219
             +  S                  Q II+ E E+  + A R   NY AW+HR W++
Sbjct:   152 QETSLPSSVAKGSLGVVPAERTQRIIQEEMEVCSEAAGRYPSNYNAWSHRIWVL 205

GO:0008318 "protein prenyltransferase activity" evidence=IEA

GO:0018342 "protein prenylation" evidence=IEA

UNIPROTKB|F1PEG1 PTAR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 174 (66.3 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
 Identities = 44/122 (36%), Positives = 63/122 (51%)

Query:   122 LLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVIN--- 178
             LLLL+ DF TAWN RK ++ +  L PI   +L L  + L+  PKS + W HRRWV+    
Sbjct:    94 LLLLNPDFTTAWNVRKELILSGTLNPI--KDLYLGKLALTKFPKSPETWIHRRWVLQQLI 151

Query:   179 --------MISRNCSTL-----QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTRE 225
                     M+  N  T+     Q +I  E E+  + A R   NY AW+HR W++  + + 
Sbjct:   152 QETSLPSFMMKGNLGTIPAERTQRLIREELEVCGEAAGRYPSNYNAWSHRIWVLQHLAKL 211

Query:   226 QV 227
              V
Sbjct:   212 DV 213

GO:0018342 "protein prenylation" evidence=IEA

GO:0008318 "protein prenyltransferase activity" evidence=IEA

UNIPROTKB|Q7Z6K3 PTAR1 "Protein prenyltransferase alpha subunit repeat-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 176 (67.0 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
 Identities = 43/122 (35%), Positives = 64/122 (52%)

Query:   122 LLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMIS 181
             LLLL+ DF TAWN RK ++ +  L PI   +L L  + L+  PKS + W HRRWV+  + 
Sbjct:    94 LLLLNPDFTTAWNVRKELILSGTLNPI--KDLHLGKLALTKFPKSPETWIHRRWVLQQLI 151

Query:   182 R-----------NCSTL-----QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTRE 225
             +           N  T+     Q +I+ E E+  + A R   NY AW+HR W++  + + 
Sbjct:   152 QETSLPSFVTKGNLGTIPTERAQRLIQEEMEVCGEAAGRYPSNYNAWSHRIWVLQHLAKL 211

Query:   226 QV 227
              V
Sbjct:   212 DV 213

GO:0008318 "protein prenyltransferase activity" evidence=IEA

GO:0018342 "protein prenylation" evidence=IEA

UNIPROTKB|J9P4Q0 PTAR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 174 (66.3 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
 Identities = 44/122 (36%), Positives = 63/122 (51%)

Query:   122 LLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVIN--- 178
             LLLL+ DF TAWN RK ++ +  L PI   +L L  + L+  PKS + W HRRWV+    
Sbjct:    94 LLLLNPDFTTAWNVRKELILSGTLNPI--KDLYLGKLALTKFPKSPETWIHRRWVLQQLI 151

Query:   179 --------MISRNCSTL-----QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTRE 225
                     M+  N  T+     Q +I  E E+  + A R   NY AW+HR W++  + + 
Sbjct:   152 QETSLPSFMMKGNLGTIPAERTQRLIREELEVCGEAAGRYPSNYNAWSHRIWVLQHLAKL 211

Query:   226 QV 227
              V
Sbjct:   212 DV 213

GO:0018342 "protein prenylation" evidence=IEA

GO:0008318 "protein prenyltransferase activity" evidence=IEA

UNIPROTKB|F1N382 Bt.90693 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 174 (66.3 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
 Identities = 59/200 (29%), Positives = 94/200 (47%)

Query:    44 LKEEIGNSLSSEDKDHESTSFWIRDHKLGIST---QILIPVYKAAKHAFISALRQYKTPG 100
             L++EIG     E + + S    + ++KLG+ +   + L+P      H   + L  Y+T  
Sbjct:    30 LRDEIGLIPCPEARYNRSPIVLV-ENKLGVESWCVKFLLPYV----H---NKLLLYRTRK 81

Query:   101 NFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVL 160
              +  K +     I+V      LLLL+ DF TAWN RK ++ +  L PI   +L L  + L
Sbjct:    82 QWLNKDE----LIDVTC---TLLLLNPDFTTAWNVRKELILSGTLNPI--KDLHLGKLAL 132

Query:   161 SHSPKSEQAWSHRRWVINMISRNCST----------------LQWIIERESELVEKIAER 204
             +  PKS + W HRRWV+  + +  S                  Q +I  E E+  + A R
Sbjct:   133 TKFPKSPETWIHRRWVLQQLIQETSLPSFMTKGNLGIIPAERTQQLIREEMEVCGEAAGR 192

Query:   205 SKMNYRAWNHRCWLVSFMTR 224
                NY AW+HR W++  + +
Sbjct:   193 YPSNYNAWSHRIWVLQHLAK 212

GO:0018342 "protein prenylation" evidence=IEA

GO:0008318 "protein prenyltransferase activity" evidence=IEA

UNIPROTKB|G5E608 Bt.90693 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 174 (66.3 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
 Identities = 59/200 (29%), Positives = 94/200 (47%)

Query:    44 LKEEIGNSLSSEDKDHESTSFWIRDHKLGIST---QILIPVYKAAKHAFISALRQYKTPG 100
             L++EIG     E + + S    + ++KLG+ +   + L+P      H   + L  Y+T  
Sbjct:    30 LRDEIGLIPCPEARYNRSPIVLV-ENKLGVESWCVKFLLPYV----H---NKLLLYRTRK 81

Query:   101 NFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVL 160
              +  K +     I+V      LLLL+ DF TAWN RK ++ +  L PI   +L L  + L
Sbjct:    82 QWLNKDE----LIDVTC---TLLLLNPDFTTAWNVRKELILSGTLNPI--KDLHLGKLAL 132

Query:   161 SHSPKSEQAWSHRRWVINMISRNCST----------------LQWIIERESELVEKIAER 204
             +  PKS + W HRRWV+  + +  S                  Q +I  E E+  + A R
Sbjct:   133 TKFPKSPETWIHRRWVLQQLIQETSLPSFMTKGNLGIIPAERTQQLIREEMEVCGEAAGR 192

Query:   205 SKMNYRAWNHRCWLVSFMTR 224
                NY AW+HR W++  + +
Sbjct:   193 YPSNYNAWSHRIWVLQHLAK 212

GO:0018342 "protein prenylation" evidence=IEA

GO:0008318 "protein prenyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.5.1.58	LOW CONFIDENCE prediction!
4th Layer	2.5.1.59	LOW CONFIDENCE prediction!
3rd Layer	2.5.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	425
PLN02789	320	PLN02789, PLN02789, farnesyltranstransferase	3e-08
COG5536	328	COG5536, BET4, Protein prenyltransferase, alpha su	1e-07
PLN02789	320	PLN02789, PLN02789, farnesyltranstransferase	2e-05
PLN02789	320	PLN02789, PLN02789, farnesyltranstransferase	1e-04
pfam01239	30	pfam01239, PPTA, Protein prenyltransferase alpha s	0.004

>gnl|CDD|215423 PLN02789, PLN02789, farnesyltranstransferase

 Score = 54.4 bits (131), Expect = 3e-08
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 8/89 (8%)

Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
           T W+ R+L +    L   L +EL  +  V   +PK+ Q W HRRW+   +  + +     
Sbjct: 72  TVWHFRRLCLE--ALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAA----- 124

Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLV 219
             +E E   KI      NY AW+HR W++
Sbjct: 125 -NKELEFTRKILSLDAKNYHAWSHRQWVL 152

Length = 320

>gnl|CDD|227823 COG5536, BET4, Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 32/136 (23%), Positives = 61/136 (44%), Gaps = 15/136 (11%)

Query: 129 FATAWNSRKLIVSNKQLL-----PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRN 183
           F T WN R  I+ + Q++      +L +EL      L  +PK+ Q W HR+W++      
Sbjct: 65  FYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWML----EL 120

Query: 184 CSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVA 243
                W   RE  + +K+ +    NY  W++R W++  +      ++LK    ++   + 
Sbjct: 121 FPKPSW--GRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIE 178

Query: 244 ----DNSCFHYHRRLM 255
               +NS +H+    +
Sbjct: 179 TDIYNNSAWHHRYIWI 194

Length = 328

>gnl|CDD|215423 PLN02789, PLN02789, farnesyltranstransferase

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 14/105 (13%)

Query: 133 WNSRKLIVSNKQLLPILMD-ELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191
           W+ R+ +   ++L P   + EL  +  +LS   K+  AWSHR+WV+  +        W  
Sbjct: 109 WHHRRWLA--EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGG------W-- 158

Query: 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRN 236
           E E E   ++ E    N  AWN R + V  +TR  +L  L+  R+
Sbjct: 159 EDELEYCHQLLEEDVRNNSAWNQR-YFV--ITRSPLLGGLEAMRD 200

Length = 320

>gnl|CDD|215423 PLN02789, PLN02789, farnesyltranstransferase

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 27/155 (17%)

Query: 153 LRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAW 212
           L L+A V+  +P +   W  RR  +         L   +E E +  E +AE +  NY+ W
Sbjct: 57  LDLTADVIRLNPGNYTVWHFRRLCL-------EALDADLEEELDFAEDVAEDNPKNYQIW 109

Query: 213 NHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSG 272
           +HR WL   +  +    EL+ +R      +      +YH     W+     H Q      
Sbjct: 110 HHRRWLAEKLGPDAANKELEFTRK-----ILSLDAKNYH----AWS-----HRQ------ 149

Query: 273 YFVETYQVWKEELDWNESLIKRYVGREALWLHRRF 307
           + + T   W++EL++   L++  V   + W  R F
Sbjct: 150 WVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYF 184

Length = 320

>gnl|CDD|201678 pfam01239, PPTA, Protein prenyltransferase alpha subunit repeat

 Score = 34.4 bits (80), Expect = 0.004
 Identities = 11/30 (36%), Positives = 20/30 (66%)

Query: 151 DELRLSAVVLSHSPKSEQAWSHRRWVINMI 180
           +EL L+  +L   PK+  AW++RRW++  +
Sbjct: 1   EELELTEKLLELDPKNYSAWNYRRWLLEKL 30

Both farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) recognise a CaaX motif on their substrates where 'a' stands for preferably aliphatic residues, whereas GGT2 recognises a completely different motif. Important substrates for FT include, amongst others, many members of the Ras superfamily. GGT1 substrates include some of the other small GTPases and GGT2 substrates include the Rab family. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	425
PLN02789	320	farnesyltranstransferase	100.0
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	100.0
KOG0529	421	consensus Protein geranylgeranyltransferase type I	100.0
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	100.0
KOG0529	421	consensus Protein geranylgeranyltransferase type I	100.0
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	100.0
PLN02789	320	farnesyltranstransferase	99.97
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	99.97
PF01239	31	PPTA: Protein prenyltransferase alpha subunit repe	98.93
PF01239	31	PPTA: Protein prenyltransferase alpha subunit repe	98.78
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.76
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.66
PRK15359	144	type III secretion system chaperone protein SscB;	98.62
PRK15359	144	type III secretion system chaperone protein SscB;	98.29
PRK12370	553	invasion protein regulator; Provisional	98.28
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.21
PRK12370	553	invasion protein regulator; Provisional	98.19
PRK11189	296	lipoprotein NlpI; Provisional	98.19
PRK11189	296	lipoprotein NlpI; Provisional	98.1
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	97.89
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	97.88
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.88
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.8
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	97.77
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	97.76
KOG1126	638	consensus DNA-binding cell division cycle control	97.62
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	97.58
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.58
KOG1126	638	consensus DNA-binding cell division cycle control	97.54
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	97.52
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.51
KOG0547	606	consensus Translocase of outer mitochondrial membr	97.46
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.41
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	97.39
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.35
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	97.22
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.22
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.2
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	97.04
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.02
KOG0553	304	consensus TPR repeat-containing protein [General f	96.97
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	96.92
KOG0547	606	consensus Translocase of outer mitochondrial membr	96.89
PRK11788	389	tetratricopeptide repeat protein; Provisional	96.86
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	96.84
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	96.82
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.78
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	96.78
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	96.74
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	96.71
KOG2076	895	consensus RNA polymerase III transcription factor	96.71
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.62
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	96.6
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	96.59
KOG0553	304	consensus TPR repeat-containing protein [General f	96.54
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.36
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.34
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	96.15
PRK14574	822	hmsH outer membrane protein; Provisional	96.11
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	95.5
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	95.35
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	95.23
PRK14574	822	hmsH outer membrane protein; Provisional	95.17
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	95.12
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	95.0
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	94.95
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	94.93
PF13371	73	TPR_9: Tetratricopeptide repeat	94.84
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	94.8
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	94.8
KOG3060	289	consensus Uncharacterized conserved protein [Funct	94.72
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	94.62
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	94.6
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	94.59
PRK11906	458	transcriptional regulator; Provisional	94.57
KOG2076	895	consensus RNA polymerase III transcription factor	94.53
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	94.5
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	94.43
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	94.22
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	94.12
COG4783	484	Putative Zn-dependent protease, contains TPR repea	94.08
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	93.83
KOG1125	579	consensus TPR repeat-containing protein [General f	93.7
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	93.68
KOG1125	579	consensus TPR repeat-containing protein [General f	93.62
PRK11906	458	transcriptional regulator; Provisional	93.57
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	93.47
PF13371	73	TPR_9: Tetratricopeptide repeat	93.44
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	93.44
KOG4234	271	consensus TPR repeat-containing protein [General f	92.64
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	92.62
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	92.35
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	92.26
KOG3060	289	consensus Uncharacterized conserved protein [Funct	92.22
PRK14720	906	transcript cleavage factor/unknown domain fusion p	92.22
PRK10803	263	tol-pal system protein YbgF; Provisional	91.92
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	91.91
KOG0495	913	consensus HAT repeat protein [RNA processing and m	91.88
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	91.83
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	91.77
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	91.36
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	90.52
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	90.12
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	89.31
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	89.28
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	89.27
COG4783	484	Putative Zn-dependent protease, contains TPR repea	89.06
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	88.82
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	88.1
PRK14720	906	transcript cleavage factor/unknown domain fusion p	87.41
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	87.27
PF13431	34	TPR_17: Tetratricopeptide repeat	86.59
KOG1128	777	consensus Uncharacterized conserved protein, conta	85.2
PRK10803	263	tol-pal system protein YbgF; Provisional	84.56
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	84.23
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	83.86
PF13431	34	TPR_17: Tetratricopeptide repeat	83.74
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	83.68
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	83.57
KOG4234	271	consensus TPR repeat-containing protein [General f	83.57
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	82.12
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	81.8
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	81.06
PRK15331	165	chaperone protein SicA; Provisional	80.15

>PLN02789 farnesyltranstransferase

Probab=100.00  E-value=5.8e-47  Score=377.07  Aligned_cols=300  Identities=20%  Similarity=0.244  Sum_probs=237.2

Q ss_pred             hccCCCCCcccccCCcchhhchhhhccCCCCCCCCCCCCceEeecccccchhhhhHHHHHHHHHHHHHHHHhhcCCCCCC
Q 045108           24 LDLDPLIDEVGFIHPSQLATLKEEIGNSLSSEDKDHESTSFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNFS  103 (425)
Q Consensus        24 l~~dp~idei~~i~~~~~~~~~~e~~~~~~~~~~~~e~~p~~~~~~~lgi~~~~l~~ly~~A~~~f~~~l~~y~~~~~~~  103 (425)
                      +..+|.|++|.+||..       + |                    .=+|....+.+.|..|...|+++++         
T Consensus         6 ~~~~~~~~d~~p~~~~-------~-~--------------------~~~~~~i~y~~~~~~a~~~~ra~l~---------   48 (320)
T PLN02789          6 LSQRPEWADVTPIPQD-------D-G--------------------PNPVVPIAYTPEFREAMDYFRAVYA---------   48 (320)
T ss_pred             cccCCCcCCccccCCC-------C-C--------------------CCcccceeeCHHHHHHHHHHHHHHH---------
Confidence            5678999999998832       1 1                    0155566678999999999999887         


Q ss_pred             CCCCCccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhc
Q 045108          104 GKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRN  183 (425)
Q Consensus       104 ~~~~~~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~  183 (425)
                          ..+.++++|.+|.++|.+||+|||||++|+.+|..++  ..+++||.+++.++..|||+|++|+||+|++.+++..
T Consensus        49 ----~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~--~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~  122 (320)
T PLN02789         49 ----SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALD--ADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPD  122 (320)
T ss_pred             ----cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcc--hhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCch
Confidence                3567899999999999999999999999999999884  4689999999999999999999999999999987641


Q ss_pred             cchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhcccc
Q 045108          184 CSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFC  263 (425)
Q Consensus       184 ~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~  263 (425)
                            ...+|+.+++++++.+|||||||+||+|++.+++.  +++||++++++|+.||+|+|||+||.+++.++...  
T Consensus       123 ------~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~--~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l--  192 (320)
T PLN02789        123 ------AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGG--WEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLL--  192 (320)
T ss_pred             ------hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccc--
Confidence                  24789999999999999999999999999999976  89999999999999999999999999999875210  


Q ss_pred             ccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhccCcCCCCCCCCCchhhHHHHHHH
Q 045108          264 HIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDH  343 (425)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~  343 (425)
                              + .  ...+.++|++|+.++|..+|+|+|+|+|+++++.....       +.        .......+|.  
T Consensus       193 --------~-~--~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~-------~l--------~~~~~~~~~~--  244 (320)
T PLN02789        193 --------G-G--LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKE-------AL--------VSDPEVSSVC--  244 (320)
T ss_pred             --------c-c--ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCc-------cc--------ccchhHHHHH--
Confidence                    0 0  01256789999999999999999999999999864100       00        0001122332  


Q ss_pred             HHHHHHhhhccCCCCcchhHHHhHHHHHHHHHHHhhhhcccccchhhh-------------hhhcchhhHHHHHhhhCCC
Q 045108          344 ELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQIPEYQGINIQE-------------KLQAGAGDLMRMLKRSCPD  410 (425)
Q Consensus       344 E~~lv~~~~~~~p~d~~~~~~~qs~~~~~y~~WL~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~~p~  410 (425)
                           .+++...|+            +..++.||+|.+++... +..+             .. ..+..+.++|.++|||
T Consensus       245 -----~~~~~~~~~------------s~~al~~l~d~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~a~~~~~~l~~~d~i  305 (320)
T PLN02789        245 -----LEVLSKDSN------------HVFALSDLLDLLCEGLQ-PTAEFRDTVDTLAEELSDS-TLAQAVCSELEVADPM  305 (320)
T ss_pred             -----HHhhcccCC------------cHHHHHHHHHHHHhhhc-cchhhhhhhhccccccccH-HHHHHHHHHHHhhCcH
Confidence                 222223442            35689999999986521 1000             11 2478899999999999


Q ss_pred             ccchhhhhhccCC
Q 045108          411 RSSLWDYLVGYHS  423 (425)
Q Consensus       411 r~~~w~~~~~~~~  423 (425)
                      |++||+||++.+.
T Consensus       306 r~~yw~~~~~~~~  318 (320)
T PLN02789        306 RRNYWAWRKSKLP  318 (320)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999998874

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-47  Score=359.38  Aligned_cols=281  Identities=19%  Similarity=0.242  Sum_probs=216.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHH
Q 045108           75 TQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELR  154 (425)
Q Consensus        75 ~~~l~~ly~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~  154 (425)
                      +.++..-|+.+..+|++.+.             .++.|+++|++|..+|.+||.|||+|+||+.+|.++.  .++.+||+
T Consensus        35 ~I~Yte~fr~~m~YfRAI~~-------------~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~--~dL~~El~   99 (318)
T KOG0530|consen   35 KIAYTEDFRDVMDYFRAIIA-------------KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLM--SDLNKELE   99 (318)
T ss_pred             EeeechhHHHHHHHHHHHHh-------------ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhH--HHHHHHHH
Confidence            44567789999999888776             4689999999999999999999999999999999996  78999999


Q ss_pred             HHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHH
Q 045108          155 LSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQS  234 (425)
Q Consensus       155 ~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~  234 (425)
                      +++.+..-|||||++|+|||++++.++..       --+||+||..++..+.||||||+||.|+++.++.  ++.||+++
T Consensus       100 ~l~eI~e~npKNYQvWHHRr~ive~l~d~-------s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~--~~~EL~y~  170 (318)
T KOG0530|consen  100 YLDEIIEDNPKNYQVWHHRRVIVELLGDP-------SFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKD--YEDELAYA  170 (318)
T ss_pred             HHHHHHHhCccchhHHHHHHHHHHHhcCc-------ccchHHHHHHHHhccccchhhhHHHHHHHHHHhh--HHHHHHHH
Confidence            99999999999999999999999998752       1399999999999999999999999999999987  99999999


Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 045108          235 RNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLYLIK  314 (425)
Q Consensus       235 ~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~~~~  314 (425)
                      ..+|+.|.+|+|||+||.|++....+              ......+++|+.|+.++|...|.|+|+|+|+++++..   
T Consensus       171 ~~Lle~Di~NNSAWN~Ryfvi~~~~~--------------~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~---  233 (318)
T KOG0530|consen  171 DELLEEDIRNNSAWNQRYFVITNTKG--------------VISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL---  233 (318)
T ss_pred             HHHHHHhhhccchhheeeEEEEeccC--------------CccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh---
Confidence            99999999999999999999875322              1123578999999999999999999999999999863   


Q ss_pred             HHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHHHhhhccCCCCcchhHHHhHHHHHHHHHHHhhhhcccccchhhhhhh
Q 045108          315 HIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQIPEYQGINIQEKLQ  394 (425)
Q Consensus       315 ~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv~~~~~~~p~d~~~~~~~qs~~~~~y~~WL~~~~~~~~~~~~~~~~~  394 (425)
                           +.+.+        .......|+..       .. +-++..++..  -+.+.-+|.+=.+.+.+..     ++ ..
T Consensus       234 -----d~gl~--------s~s~vv~f~~~-------l~-~~~~~~sP~l--la~l~d~~~e~~l~~~~~~-----~~-~a  284 (318)
T KOG0530|consen  234 -----DSGLS--------SDSKVVSFVEN-------LY-LQLPKRSPFL--LAFLLDLYAEDALAYKSSA-----EE-LA  284 (318)
T ss_pred             -----ccCCc--------CCchHHHHHHH-------Hh-hccCCCChhH--HHHHHHHHHHHHhhccccc-----hH-HH
Confidence                 01111        12234344322       22 2233322221  2222233321111111111     11 11


Q ss_pred             cchhhHHHHHh-hhCCCccchhhhhhccCCCC
Q 045108          395 AGAGDLMRMLK-RSCPDRSSLWDYLVGYHSEP  425 (425)
Q Consensus       395 ~~~~~~~~~l~-~~~p~r~~~w~~~~~~~~~~  425 (425)
                      ..+.++-+.|+ ++||+|.+||.|++++++.+
T Consensus       285 ~~a~~ly~~La~~~DpiR~nyW~~~~s~ls~~  316 (318)
T KOG0530|consen  285 RKAVKLYEDLAIKVDPIRKNYWRHKQSQLSTA  316 (318)
T ss_pred             HHHHHHHHHHhhccCcHHHHHHHHHHhhcccc
Confidence            12667777788 99999999999999888753

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2e-38  Score=314.32  Aligned_cols=246  Identities=22%  Similarity=0.291  Sum_probs=194.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccC---------C
Q 045108           75 TQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQ---------L  145 (425)
Q Consensus        75 ~~~l~~ly~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~---------~  145 (425)
                      ..+....|+.+..+|+++..             .++++.+++++|..+|..||++||+|||||.++....         .
T Consensus        21 ~~~k~~~~~~~~s~i~~~r~-------------~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek   87 (421)
T KOG0529|consen   21 RAFKAGQLRSLFSIIQKKRE-------------AKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEK   87 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-------------ccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHH
Confidence            34557788889888887644             4688999999999999999999999999999887643         1


Q ss_pred             cccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchh
Q 045108          146 LPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTRE  225 (425)
Q Consensus       146 ~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~  225 (425)
                      ...+.+||.++..+|..|||+|.+||||+|+|++....      .|..||++|+++++.||||||||+|||||+.+...+
T Consensus        88 ~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~------~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~  161 (421)
T KOG0529|consen   88 QALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS------DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS  161 (421)
T ss_pred             HHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence            23578999999999999999999999999999986542      489999999999999999999999999999987642


Q ss_pred             --hHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHH
Q 045108          226 --QVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWL  303 (425)
Q Consensus       226 --~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~  303 (425)
                        ...+|+++|+++|..|++||||||||..+|..+....       .+|. .-....+..|++++.++|.++|+++|+|+
T Consensus       162 ~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~-------~~g~-~~~~~~l~sEle~v~saiFTdp~DqS~Wf  233 (421)
T KOG0529|consen  162 RNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKE-------ADGN-FMPKELLQSELEMVHSAIFTDPEDQSCWF  233 (421)
T ss_pred             cccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhcccc-------ccCc-cCCHHHHHHHHHHHHHHHhcCccccceee
Confidence              4689999999999999999999999999999886541       1110 11246789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHHHh
Q 045108          304 HRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHS  350 (425)
Q Consensus       304 yrr~Ll~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv~~  350 (425)
                      |+|+|+..-.+.-.  .. +|...-.........-..+..|+.+|++
T Consensus       234 Y~rWLl~~~~~~~~--~~-~S~s~~ls~~~~~p~~~~l~~e~~~v~~  277 (421)
T KOG0529|consen  234 YHRWLLGRGMRREC--YI-VSHSALLSESFSEPLIKYLRSEIGLVQS  277 (421)
T ss_pred             ehHHhhcccccccc--cc-cccccccccccCCccHHHHHHHhhhhhh
Confidence            99999986211100  00 0111001111222234667888888887

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.2e-38  Score=297.11  Aligned_cols=267  Identities=16%  Similarity=0.213  Sum_probs=198.5

Q ss_pred             ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccC-----CcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhc
Q 045108          109 DTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQ-----LLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRN  183 (425)
Q Consensus       109 ~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~-----~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~  183 (425)
                      .+++.++|+.|..++..||++||+||||+.++.+..     ....+..||.|+..++.-|||+|++||||+|+|+.....
T Consensus        45 keys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~  124 (328)
T COG5536          45 KEYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKP  124 (328)
T ss_pred             hhcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCc
Confidence            589999999999999999999999999999998821     124578999999999999999999999999999987542


Q ss_pred             cchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhc----hhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 045108          184 CSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMT----REQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNL  259 (425)
Q Consensus       184 ~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~----~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~  259 (425)
                            .|..|+.++.++++.||||||+|+||+|++.+..    ......|++++...|..|+.|+||||||..++..+.
T Consensus       125 ------~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~  198 (328)
T COG5536         125 ------SWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRF  198 (328)
T ss_pred             ------ccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHH
Confidence                  3899999999999999999999999999995532    235789999999999999999999999988877765


Q ss_pred             ccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH-HHHHHhhhccCcCCCCCCCCCchhhHH
Q 045108          260 EGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLY-LIKHIATHLLGVSCQSKPKASVDIDID  338 (425)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~  338 (425)
                      ..+.           +.....+++||++..++|..+|.|+|+|.|.|+++.. .....                +.+.+.
T Consensus       199 ~~~~-----------visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~~~~d~~----------------~~~e~v  251 (328)
T COG5536         199 NRGD-----------VISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSEFATDIV----------------MIGEKV  251 (328)
T ss_pred             hhcc-----------cchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhccchHHHH----------------HHHHHH
Confidence            4311           1112358999999999999999999999999999876 22111                122344


Q ss_pred             HHHHHHHHHHH--hhhccCCCCcchhHHHhHHH--HHHHHHHHhhhhcccccchhhhhhhcchh-hHHHHHhhhCCCccc
Q 045108          339 SLMDHELCLVH--SCSTTIPDANFEDFQAQAIH--SAAYMLWLTKQIPEYQGINIQEKLQAGAG-DLMRMLKRSCPDRSS  413 (425)
Q Consensus       339 ~~l~~E~~lv~--~~~~~~p~d~~~~~~~qs~~--~~~y~~WL~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~p~r~~  413 (425)
                      +.|.+++.++.  +.-..-|+|-   ++-.+++  ..+.+.|..+-  .+       +.  ... .+..++.++||.|+|
T Consensus       252 ~~L~k~~~iin~~el~l~~ken~---~~l~~~l~lE~l~~~~~~~~--te-------~d--~e~~alv~~~i~~DP~Rr~  317 (328)
T COG5536         252 EDLGKYIVIINGKELDLGPKENL---PCLHSLLELEFLCHAEKALL--TE-------RD--IEQKALVELAIKVDPARRN  317 (328)
T ss_pred             HHHHhhheeccccccccCCcccc---HHHHHHHHHHHHHHHhhcCc--ch-------hH--HHHHHHHHHHHhcChHHHH
Confidence            55566655554  3333333331   1223321  22222333222  11       11  111 245567799999999


Q ss_pred             hhhhhhccC
Q 045108          414 LWDYLVGYH  422 (425)
Q Consensus       414 ~w~~~~~~~  422 (425)
                      +|..+.+.+
T Consensus       318 ~y~~l~~r~  326 (328)
T COG5536         318 LYSTLHERF  326 (328)
T ss_pred             HHHHHHhhc
Confidence            999887643

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5e-36  Score=297.21  Aligned_cols=193  Identities=23%  Similarity=0.310  Sum_probs=164.3

Q ss_pred             HHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhc--cc--hhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchh
Q 045108          150 MDELRLSAVVLSHSPKSEQAWSHRRWVINMISRN--CS--TLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTRE  225 (425)
Q Consensus       150 ~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~--~~--~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~  225 (425)
                      .+.+.++..+|..||..|++|||||-++......  .+  ..+..+.+||.+++.+++.+||.|.||+||+|++++-+.+
T Consensus        46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~  125 (421)
T KOG0529|consen   46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS  125 (421)
T ss_pred             hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence            5569999999999999999999999999865441  11  2456899999999999999999999999999999998888


Q ss_pred             hHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 045108          226 QVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHR  305 (425)
Q Consensus       226 ~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yr  305 (425)
                      +|..||+.|.++++.||+|||||||||||+......                .....+|++|++++|..+|+|+|+||||
T Consensus       126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~----------------~~~~~~El~ftt~~I~~nfSNYsaWhyR  189 (421)
T KOG0529|consen  126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS----------------RNLEKEELEFTTKLINDNFSNYSAWHYR  189 (421)
T ss_pred             hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc----------------cccchhHHHHHHHHHhccchhhhHHHHH
Confidence            899999999999999999999999999999875321                1246899999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHHHhhhccCCCCcchhHHHhHHHHHHHHHHHhhhh
Q 045108          306 RFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQI  381 (425)
Q Consensus       306 r~Ll~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv~~~~~~~p~d~~~~~~~qs~~~~~y~~WL~~~~  381 (425)
                      ..+++.+...-+ +|.             .-....|..|+++|++|+||||+|+|         +|+|++||+++.
T Consensus       190 s~lL~~l~~~~~-~g~-------------~~~~~~l~sEle~v~saiFTdp~DqS---------~WfY~rWLl~~~  242 (421)
T KOG0529|consen  190 SLLLSTLHPKEA-DGN-------------FMPKELLQSELEMVHSAIFTDPEDQS---------CWFYHRWLLGRG  242 (421)
T ss_pred             HHHHHHhccccc-cCc-------------cCCHHHHHHHHHHHHHHHhcCccccc---------eeeehHHhhccc
Confidence            999987654321 110             01247799999999999999999955         677999999983

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.6e-34  Score=267.63  Aligned_cols=193  Identities=17%  Similarity=0.314  Sum_probs=164.4

Q ss_pred             cHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhH
Q 045108          148 ILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQV  227 (425)
Q Consensus       148 ~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~  227 (425)
                      -...+|++|+.++..||..|++||||+-|+.+......+....+.+||.+|+.+++.+||||+.|+||+|+++..+.+.|
T Consensus        47 ys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~  126 (328)
T COG5536          47 YSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSW  126 (328)
T ss_pred             cCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCccc
Confidence            34789999999999999999999999999998443333446789999999999999999999999999999999988889


Q ss_pred             HHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHH
Q 045108          228 LNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRF  307 (425)
Q Consensus       228 ~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~  307 (425)
                      ..|+..++++++.|++||||||||++++.......              -.+.+..|++|++.+|++||.|.|||+||-.
T Consensus       127 ~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~--------------N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~  192 (328)
T COG5536         127 GRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLF--------------NFSDLKHELEYTTSLIETDIYNNSAWHHRYI  192 (328)
T ss_pred             chhHHHHHHHhcccccccceeeeEeeeeecchhhc--------------cchhHHHHHHhHHHHHhhCCCChHHHHHHHH
Confidence            99999999999999999999999999996642211              1346889999999999999999999999977


Q ss_pred             HHHHHHHHHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHHHhhhccCCCCcchhHHHhHHHHHHHHHHHhhh
Q 045108          308 LSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQ  380 (425)
Q Consensus       308 Ll~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv~~~~~~~p~d~~~~~~~qs~~~~~y~~WL~~~  380 (425)
                      ++..+...     ++          +.  ...++.+|++++.+++|++|+|+|         .|.|++|+.+.
T Consensus       193 ~~~~~~~~-----~~----------vi--sqk~l~~eL~~i~~~if~~p~~~S---------~w~y~r~~~~~  239 (328)
T COG5536         193 WIERRFNR-----GD----------VI--SQKYLEKELEYIFDKIFTDPDNQS---------VWGYLRGVSSE  239 (328)
T ss_pred             HHHHHHhh-----cc----------cc--hHHHHHHHHHHHHhhhhcCccccc---------hhhHHHHHhcc
Confidence            77766541     12          12  234899999999999999998854         68899999976

>PLN02789 farnesyltranstransferase

Probab=99.97  E-value=6.9e-31  Score=261.74  Aligned_cols=202  Identities=20%  Similarity=0.344  Sum_probs=177.3

Q ss_pred             HHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHH
Q 045108          121 ALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEK  200 (425)
Q Consensus       121 ~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~  200 (425)
                      +.|...|++..||.+.|.++....   ..+++|.+++.+|..||++|++|+||++++..++.       .+++||.++.+
T Consensus        28 ~~i~y~~~~~~a~~~~ra~l~~~e---~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~-------~l~eeL~~~~~   97 (320)
T PLN02789         28 VPIAYTPEFREAMDYFRAVYASDE---RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDA-------DLEEELDFAED   97 (320)
T ss_pred             cceeeCHHHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcch-------hHHHHHHHHHH
Confidence            457788999999999999999884   67999999999999999999999999999998853       37999999999


Q ss_pred             HHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHH
Q 045108          201 IAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQV  280 (425)
Q Consensus       201 ~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~  280 (425)
                      +++.+||||++|+||+|++..++.....+|+++++++++.||+|+|||+||++++..+ +                   .
T Consensus        98 ~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l-~-------------------~  157 (320)
T PLN02789         98 VAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTL-G-------------------G  157 (320)
T ss_pred             HHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh-h-------------------h
Confidence            9999999999999999999998864457899999999999999999999999999885 1                   3


Q ss_pred             HHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHHHhhhccCCCCcc
Q 045108          281 WKEELDWNESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANF  360 (425)
Q Consensus       281 ~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv~~~~~~~p~d~~  360 (425)
                      +++||++++++|+.+|+|.|+|+||.+++..+.. .    +              .....+++|++++..++.++|++++
T Consensus       158 ~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~-l----~--------------~~~~~~e~el~y~~~aI~~~P~N~S  218 (320)
T PLN02789        158 WEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPL-L----G--------------GLEAMRDSELKYTIDAILANPRNES  218 (320)
T ss_pred             HHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccc-c----c--------------cccccHHHHHHHHHHHHHhCCCCcC
Confidence            8899999999999999999999999998865311 0    0              0113467899999999999999966


Q ss_pred             hhHHHhHHHHHHHHHHHhhh
Q 045108          361 EDFQAQAIHSAAYMLWLTKQ  380 (425)
Q Consensus       361 ~~~~~qs~~~~~y~~WL~~~  380 (425)
                               +|.|+.|+...
T Consensus       219 ---------aW~Yl~~ll~~  229 (320)
T PLN02789        219 ---------PWRYLRGLFKD  229 (320)
T ss_pred             ---------HHHHHHHHHhc
Confidence                     78899999966

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3.4e-30  Score=242.14  Aligned_cols=193  Identities=17%  Similarity=0.315  Sum_probs=166.2

Q ss_pred             ccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCC
Q 045108          128 DFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKM  207 (425)
Q Consensus       128 e~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pk  207 (425)
                      ++-.+.-|-|.++....   ...++|.+|+.++..||-+||+|+|||-++.++..       .+.+||+++..+++.+||
T Consensus        41 ~fr~~m~YfRAI~~~~E---~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~-------dL~~El~~l~eI~e~npK  110 (318)
T KOG0530|consen   41 DFRDVMDYFRAIIAKNE---KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMS-------DLNKELEYLDEIIEDNPK  110 (318)
T ss_pred             hHHHHHHHHHHHHhccc---cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHhCcc
Confidence            45556667677777664   45899999999999999999999999999999876       489999999999999999


Q ss_pred             chhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHH
Q 045108          208 NYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDW  287 (425)
Q Consensus       208 NY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~  287 (425)
                      ||.+|+||+|+++.++.+.. +||+++..++..|..|||||+||+|++..+                    ..++.||.|
T Consensus       111 NYQvWHHRr~ive~l~d~s~-rELef~~~~l~~DaKNYHaWshRqW~~r~F--------------------~~~~~EL~y  169 (318)
T KOG0530|consen  111 NYQVWHHRRVIVELLGDPSF-RELEFTKLMLDDDAKNYHAWSHRQWVLRFF--------------------KDYEDELAY  169 (318)
T ss_pred             chhHHHHHHHHHHHhcCccc-chHHHHHHHHhccccchhhhHHHHHHHHHH--------------------hhHHHHHHH
Confidence            99999999999999986433 999999999999999999999999999875                    248999999


Q ss_pred             HHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHHHhhhccCCCCcchhHHHhH
Q 045108          288 NESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANFEDFQAQA  367 (425)
Q Consensus       288 ~~~~I~~~p~neSaW~yrr~Ll~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv~~~~~~~p~d~~~~~~~qs  367 (425)
                      +.++|+.+-.|.|||+||-|++....       +           +.  .+..++.|+.++.+.+.+.|+++|       
T Consensus       170 ~~~Lle~Di~NNSAWN~Ryfvi~~~~-------~-----------~~--~~~~le~El~yt~~~I~~vP~NeS-------  222 (318)
T KOG0530|consen  170 ADELLEEDIRNNSAWNQRYFVITNTK-------G-----------VI--SKAELERELNYTKDKILLVPNNES-------  222 (318)
T ss_pred             HHHHHHHhhhccchhheeeEEEEecc-------C-----------Cc--cHHHHHHHHHHHHHHHHhCCCCcc-------
Confidence            99999999999999999998875421       0           11  125689999999999999999966       


Q ss_pred             HHHHHHHHHHhhh
Q 045108          368 IHSAAYMLWLTKQ  380 (425)
Q Consensus       368 ~~~~~y~~WL~~~  380 (425)
                        +|-|++=+++.
T Consensus       223 --aWnYL~G~l~~  233 (318)
T KOG0530|consen  223 --AWNYLKGLLEL  233 (318)
T ss_pred             --HHHHHHHHHHh
Confidence              77888777755

>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein

Probab=98.93  E-value=1.3e-09  Score=71.18  Aligned_cols=30  Identities=40%  Similarity=0.738  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHhcCCchhhhhHHHHHHHhh
Q 045108          193 RESELVEKIAERSKMNYRAWNHRCWLVSFM  222 (425)
Q Consensus       193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~  222 (425)
                      +||++|..++..+||||+||+||+||++++
T Consensus         1 ~El~~~~~~l~~~pknys~W~yR~~ll~~l   30 (31)
T PF01239_consen    1 DELEFTKKALEKDPKNYSAWNYRRWLLKQL   30 (31)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence            589999999999999999999999999875

Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....

>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein

Probab=98.78  E-value=8.5e-09  Score=67.25  Aligned_cols=30  Identities=37%  Similarity=0.831  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHhhCCCchhhhhHHHHHHHHH
Q 045108          151 DELRLSAVVLSHSPKSEQAWSHRRWVINMI  180 (425)
Q Consensus       151 ~EL~~~~~lL~~~PKsy~~W~hRrwll~~l  180 (425)
                      +||.++..++..+||+|++|+||+|+++++
T Consensus         1 ~El~~~~~~l~~~pknys~W~yR~~ll~~l   30 (31)
T PF01239_consen    1 DELEFTKKALEKDPKNYSAWNYRRWLLKQL   30 (31)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence            599999999999999999999999999876

Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.76  E-value=1.5e-06  Score=94.45  Aligned_cols=160  Identities=8%  Similarity=0.014  Sum_probs=114.0

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++++.....+|.++|.+..+|..+..++...   ..+++.+..+..++..+|+++.+|.+|..+....++        +
T Consensus       347 ~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~---g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------~  415 (615)
T TIGR00990       347 HLEALADLSKSIELDPRVTQSYIKRASMNLEL---GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE--------F  415 (615)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------H
Confidence            45677777777777887777777777776665   367777777777777778777777777777666544        5


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCC
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSS  271 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~  271 (425)
                      ++.+..+.++++.+|.|..+|..+..+...++.  +++.+..+.+.+..+|.+..+|.++..++... +           
T Consensus       416 ~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~--~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~-g-----------  481 (615)
T TIGR00990       416 AQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS--IASSMATFRRCKKNFPEAPDVYNYYGELLLDQ-N-----------  481 (615)
T ss_pred             HHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-c-----------
Confidence            677777777778888777777777777766654  56777777777777777777777776665542 1           


Q ss_pred             CchhhhhHHHHHHHHHHHHHHhhcCCCccHHHH
Q 045108          272 GYFVETYQVWKEELDWNESLIKRYVGREALWLH  304 (425)
Q Consensus       272 ~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~y  304 (425)
                              .+++.+.+..+++..+|.+...|..
T Consensus       482 --------~~~~A~~~~~~Al~l~p~~~~~~~~  506 (615)
T TIGR00990       482 --------KFDEAIEKFDTAIELEKETKPMYMN  506 (615)
T ss_pred             --------CHHHHHHHHHHHHhcCCcccccccc
Confidence                    1566677777777777776555443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.66  E-value=4.8e-06  Score=90.46  Aligned_cols=167  Identities=13%  Similarity=-0.029  Sum_probs=143.3

Q ss_pred             chHHHHHHHHHHHHh---CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchh
Q 045108          111 VAIEVMIHSKALLLL---SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTL  187 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~---npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~  187 (425)
                      ..++++.....++..   +|....+|+.++.+....   ..+++++..+..++..+|.+..+|..+.+++..++.     
T Consensus       309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~---g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~-----  380 (615)
T TIGR00990       309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLK---GKHLEALADLSKSIELDPRVTQSYIKRASMNLELGD-----  380 (615)
T ss_pred             hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC-----
Confidence            345778888888876   488889999999988776   478999999999999999999999999998887654     


Q ss_pred             HHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCC
Q 045108          188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQD  267 (425)
Q Consensus       188 ~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~  267 (425)
                         +++.+..+.++++.+|.+..+|.+++.+....+.  +++.+..+++.+..+|.|..+|..+..++..+ +       
T Consensus       381 ---~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~-g-------  447 (615)
T TIGR00990       381 ---PDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE--FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE-G-------  447 (615)
T ss_pred             ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHC-C-------
Confidence               6889999999999999999999999999887765  78999999999999999999999888776653 1       


Q ss_pred             CCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 045108          268 NNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSL  310 (425)
Q Consensus       268 ~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~  310 (425)
                                  .+++.+....+.+..+|.+..+|+++..++.
T Consensus       448 ------------~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~  478 (615)
T TIGR00990       448 ------------SIASSMATFRRCKKNFPEAPDVYNYYGELLL  478 (615)
T ss_pred             ------------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence                        2677788889999999999999988755543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.62  E-value=1.6e-06  Score=76.71  Aligned_cols=126  Identities=10%  Similarity=-0.114  Sum_probs=111.5

Q ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHH
Q 045108          117 IHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESE  196 (425)
Q Consensus       117 ~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~  196 (425)
                      .+...+|.++|++   +..+...+...   +.+.+++..+..++..+|.++.+|..+.-++..++.        +++.+.
T Consensus        14 ~~~~~al~~~p~~---~~~~g~~~~~~---g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~--------~~~A~~   79 (144)
T PRK15359         14 DILKQLLSVDPET---VYASGYASWQE---GDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKE--------YTTAIN   79 (144)
T ss_pred             HHHHHHHHcCHHH---HHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh--------HHHHHH
Confidence            3567889999997   44567777666   478999999999999999999999999999998876        689999


Q ss_pred             HHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108          197 LVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWN  258 (425)
Q Consensus       197 ~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l  258 (425)
                      ++.++++.+|.+..+|.+++.++..++.  ..+.+..+.+.+..+|.|.-.|..|..+...+
T Consensus        80 ~y~~Al~l~p~~~~a~~~lg~~l~~~g~--~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         80 FYGHALMLDASHPEPVYQTGVCLKMMGE--PGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             HHHHHHhcCCCCcHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            9999999999999999999999998886  68899999999999999999999988776543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.29  E-value=2.6e-05  Score=69.07  Aligned_cols=124  Identities=8%  Similarity=-0.102  Sum_probs=105.5

Q ss_pred             HHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHH
Q 045108          154 RLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQ  233 (425)
Q Consensus       154 ~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~  233 (425)
                      .+++.++..+|.+   |.++.+++.+.+.        +.+.+.++..++..+|.++.+|..++-++..++.  +.+.+..
T Consensus        14 ~~~~~al~~~p~~---~~~~g~~~~~~g~--------~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~--~~~A~~~   80 (144)
T PRK15359         14 DILKQLLSVDPET---VYASGYASWQEGD--------YSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKE--YTTAINF   80 (144)
T ss_pred             HHHHHHHHcCHHH---HHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh--HHHHHHH
Confidence            4667888999986   5567777766554        6889999999999999999999999999988776  7899999


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 045108          234 SRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSL  310 (425)
Q Consensus       234 ~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~  310 (425)
                      +.+.+..+|.|..+|.++..++..+ +                   -.++.+.....+|...|.|.-.|..+.....
T Consensus        81 y~~Al~l~p~~~~a~~~lg~~l~~~-g-------------------~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~  137 (144)
T PRK15359         81 YGHALMLDASHPEPVYQTGVCLKMM-G-------------------EPGLAREAFQTAIKMSYADASWSEIRQNAQI  137 (144)
T ss_pred             HHHHHhcCCCCcHHHHHHHHHHHHc-C-------------------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            9999999999999999999988764 2                   1567888889999999999999988765543

>PRK12370 invasion protein regulator; Provisional

Probab=98.28  E-value=7.6e-05  Score=80.28  Aligned_cols=166  Identities=7%  Similarity=-0.041  Sum_probs=128.2

Q ss_pred             chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccC------CcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhcc
Q 045108          111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQ------LLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNC  184 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~------~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~  184 (425)
                      ..++++.....++.++|++..+|.....+.....      ....+.+++.....++..+|++..+|..+..++...+.  
T Consensus       276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~--  353 (553)
T PRK12370        276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE--  353 (553)
T ss_pred             HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC--
Confidence            3468899999999999999999977765433211      12347889999999999999999999988877765543  


Q ss_pred             chhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccc
Q 045108          185 STLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCH  264 (425)
Q Consensus       185 ~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~  264 (425)
                            +++.+..++++++.+|.|..+|.+..+++...+.  +++.+..+++.+..+|.+..++.++..++... +    
T Consensus       354 ------~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~--~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~-g----  420 (553)
T PRK12370        354 ------YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQ--LEEALQTINECLKLDPTRAAAGITKLWITYYH-T----  420 (553)
T ss_pred             ------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc-c----
Confidence                  6889999999999999999999999999988876  78899999999999999876655544332221 1    


Q ss_pred             cCCCCCCCchhhhhHHHHHHHHHHHHHHhhc-CCCccHHHHHH
Q 045108          265 IQDNNSSGYFVETYQVWKEELDWNESLIKRY-VGREALWLHRR  306 (425)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~-p~neSaW~yrr  306 (425)
                                     -+++.+....+++..+ |++..++.++.
T Consensus       421 ---------------~~eeA~~~~~~~l~~~~p~~~~~~~~la  448 (553)
T PRK12370        421 ---------------GIDDAIRLGDELRSQHLQDNPILLSMQV  448 (553)
T ss_pred             ---------------CHHHHHHHHHHHHHhccccCHHHHHHHH
Confidence                           1466777788888776 55555555543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.21  E-value=8.8e-05  Score=63.70  Aligned_cols=126  Identities=13%  Similarity=0.043  Sum_probs=109.0

Q ss_pred             HHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHH
Q 045108          118 HSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESEL  197 (425)
Q Consensus       118 ~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~  197 (425)
                      ....++..+|++..+-..+...+...   ..+.+++.....++..+|.+..+|..+..++...+.        +...+..
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~--------~~~A~~~   73 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQ---GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKE--------YEEAIDA   73 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH--------HHHHHHH
Confidence            45688899999998877777766665   478999999999999999999999999998887765        5788889


Q ss_pred             HHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 045108          198 VEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMI  256 (425)
Q Consensus       198 ~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~  256 (425)
                      +.++++.+|.+...|.+++++....+.  +...+...++.++.+|.+..++-+++.+..
T Consensus        74 ~~~~~~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  130 (135)
T TIGR02552        74 YALAAALDPDDPRPYFHAAECLLALGE--PESALKALDLAIEICGENPEYSELKERAEA  130 (135)
T ss_pred             HHHHHhcCCCChHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            999999999999999999999888765  788899999999999999998888776644

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK12370 invasion protein regulator; Provisional

Probab=98.19  E-value=0.00012  Score=78.80  Aligned_cols=161  Identities=11%  Similarity=0.036  Sum_probs=126.0

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++++.....++.++|++..+|..+..++...   ..+++++..+..++..+|.++.+|.+...++...+.        +
T Consensus       320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~---g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~--------~  388 (553)
T PRK12370        320 MIKAKEHAIKATELDHNNPQALGLLGLINTIH---SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQ--------L  388 (553)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--------H
Confidence            57899999999999999999999999887766   378999999999999999999999999998887765        6


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhc-CCChhHHHHHHHHHHHhhccccccCCCCC
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLH-VADNSCFHYHRRLMIWNLEGFCHIQDNNS  270 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d-~~N~SaW~yR~~ll~~l~~~~~~~~~~~~  270 (425)
                      ++.+..++++++.+|.+..++.+..++.-..+.  +++.+..+.+.+..+ |.+-.++.+...++... +.         
T Consensus       389 ~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~--~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~-G~---------  456 (553)
T PRK12370        389 EEALQTINECLKLDPTRAAAGITKLWITYYHTG--IDDAIRLGDELRSQHLQDNPILLSMQVMFLSLK-GK---------  456 (553)
T ss_pred             HHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC--HHHHHHHHHHHHHhccccCHHHHHHHHHHHHhC-CC---------
Confidence            889999999999999987776666666555444  678889999999886 55555666666555432 21         


Q ss_pred             CCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 045108          271 SGYFVETYQVWKEELDWNESLIKRYVGREALWLHR  305 (425)
Q Consensus       271 ~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yr  305 (425)
                                .++......++....|.+..++...
T Consensus       457 ----------~~eA~~~~~~~~~~~~~~~~~~~~l  481 (553)
T PRK12370        457 ----------HELARKLTKEISTQEITGLIAVNLL  481 (553)
T ss_pred             ----------HHHHHHHHHHhhhccchhHHHHHHH
Confidence                      3455555666666677766666543

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.19  E-value=7.2e-05  Score=74.06  Aligned_cols=121  Identities=12%  Similarity=0.031  Sum_probs=89.9

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      ..+++.....++.++|++..+|+.++.++...+   .+++++.....++..+|++..+|..|..++...+.        +
T Consensus        80 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g---~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~--------~  148 (296)
T PRK11189         80 RALARNDFSQALALRPDMADAYNYLGIYLTQAG---NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGR--------Y  148 (296)
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--------H
Confidence            356778888899999999999999998888774   78999999999999999999999999888876654        6


Q ss_pred             HHHHHHHHHHHHhcCCchh--hhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHH
Q 045108          192 ERESELVEKIAERSKMNYR--AWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCF  248 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~--AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW  248 (425)
                      ++.++.+.++++.+|.+..  .|.+   +.....  ...+.+....+.+...+.+..+|
T Consensus       149 ~eA~~~~~~al~~~P~~~~~~~~~~---l~~~~~--~~~~A~~~l~~~~~~~~~~~~~~  202 (296)
T PRK11189        149 ELAQDDLLAFYQDDPNDPYRALWLY---LAESKL--DPKQAKENLKQRYEKLDKEQWGW  202 (296)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHH---HHHccC--CHHHHHHHHHHHHhhCCccccHH
Confidence            8889999999999998863  2221   111111  25566777766665544444334

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.10  E-value=0.00024  Score=70.30  Aligned_cols=121  Identities=11%  Similarity=0.032  Sum_probs=103.1

Q ss_pred             hHHHHHHHHHHHH---hCCcc-HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchh
Q 045108          112 AIEVMIHSKALLL---LSCDF-ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTL  187 (425)
Q Consensus       112 ~~~~L~~t~~lLl---~npe~-~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~  187 (425)
                      .+..+.....+|.   ++|+. ..+|..|+.+....+   ...+++.....++..+|+++.+|+++..++...+.     
T Consensus        42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g---~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~-----  113 (296)
T PRK11189         42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLG---LRALARNDFSQALALRPDMADAYNYLGIYLTQAGN-----  113 (296)
T ss_pred             HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-----
Confidence            4555666666774   44444 678999999888774   67899999999999999999999999998888765     


Q ss_pred             HHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCh
Q 045108          188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADN  245 (425)
Q Consensus       188 ~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~  245 (425)
                         ++..+....++++.+|.+..+|..|+.++...+.  +++.++.+++.+..+|.|.
T Consensus       114 ---~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~--~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189        114 ---FDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGR--YELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCH
Confidence               6888999999999999999999999999987765  7899999999999999986

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=97.89  E-value=0.0036  Score=68.87  Aligned_cols=160  Identities=9%  Similarity=-0.092  Sum_probs=105.1

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .+++++....++..+|++..+|.....++...   ..+.+.+.++..++..+|.+..+|..+..+....+.        +
T Consensus       141 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------~  209 (899)
T TIGR02917       141 LELAQKSYEQALAIDPRSLYAKLGLAQLALAE---NRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGN--------I  209 (899)
T ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC--------H
Confidence            35677777777777887777777776666655   367777777777777788777777777766655443        5


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCC
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSS  271 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~  271 (425)
                      +..+....++++.+|.+..+|..+..++...+.  +++....++.++..+|.+-.++..+..+.... +           
T Consensus       210 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------  275 (899)
T TIGR02917       210 ELALAAYRKAIALRPNNPAVLLALATILIEAGE--FEEAEKHADALLKKAPNSPLAHYLKALVDFQK-K-----------  275 (899)
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh-c-----------
Confidence            667777777777778777777777777665554  56667777777777776665555544433221 1           


Q ss_pred             CchhhhhHHHHHHHHHHHHHHhhcCCCccHHHH
Q 045108          272 GYFVETYQVWKEELDWNESLIKRYVGREALWLH  304 (425)
Q Consensus       272 ~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~y  304 (425)
                              -+++.+....+.+..+|++..++..
T Consensus       276 --------~~~~A~~~~~~~l~~~~~~~~~~~~  300 (899)
T TIGR02917       276 --------NYEDARETLQDALKSAPEYLPALLL  300 (899)
T ss_pred             --------CHHHHHHHHHHHHHhCCCchhHHHH
Confidence                    1344555555666666665544443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=97.88  E-value=0.005  Score=67.74  Aligned_cols=127  Identities=15%  Similarity=-0.083  Sum_probs=81.0

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++++.....++...|++..+|+....+....+   .+++....+..++..+|++..+|.....+....+.        +
T Consensus       447 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~--------~  515 (899)
T TIGR02917       447 FDKALAAAKKLEKKQPDNASLHNLLGAIYLGKG---DLAKAREAFEKALSIEPDFFPAAANLARIDIQEGN--------P  515 (899)
T ss_pred             HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCC---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCC--------H
Confidence            466777777777777777777777777766653   56777777777777777777777766655544332        4


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHH
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYH  251 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR  251 (425)
                      .+.+..+.++++.+|.+..+|.....+....+.  ..+.+..+.+.+..+|.+...+...
T Consensus       516 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l  573 (899)
T TIGR02917       516 DDAIQRFEKVLTIDPKNLRAILALAGLYLRTGN--EEEAVAWLEKAAELNPQEIEPALAL  573 (899)
T ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCccchhHHHHH
Confidence            556666666666666666666665555544433  4455555555555666555554443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.88  E-value=0.0041  Score=56.54  Aligned_cols=160  Identities=10%  Similarity=-0.046  Sum_probs=123.6

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .+++++....++..+|++..+|..+..+....   ..+.+.+.....++..+|++..+|.....++...+.        +
T Consensus        47 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~--------~  115 (234)
T TIGR02521        47 LEVAKENLDKALEHDPDDYLAYLALALYYQQL---GELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGK--------Y  115 (234)
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc--------H
Confidence            46788899999999999999999999888777   478999999999999999999999988888776554        6


Q ss_pred             HHHHHHHHHHHHhc--CCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCC
Q 045108          192 ERESELVEKIAERS--KMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNN  269 (425)
Q Consensus       192 ~~EL~~~~~~l~~~--pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~  269 (425)
                      .+.+..+.+++...  +.+..+|.....+....+.  +......+.+.+..+|.+.-+|..+..+.... +         
T Consensus       116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~---------  183 (234)
T TIGR02521       116 EQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD--FDKAEKYLTRALQIDPQRPESLLELAELYYLR-G---------  183 (234)
T ss_pred             HHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc-C---------
Confidence            77888888888743  5566677777776665554  67889999999999999877777665554432 1         


Q ss_pred             CCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHH
Q 045108          270 SSGYFVETYQVWKEELDWNESLIKRYVGREALWLH  304 (425)
Q Consensus       270 ~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~y  304 (425)
                                -+++.+.+..+.+...|.+...|..
T Consensus       184 ----------~~~~A~~~~~~~~~~~~~~~~~~~~  208 (234)
T TIGR02521       184 ----------QYKDARAYLERYQQTYNQTAESLWL  208 (234)
T ss_pred             ----------CHHHHHHHHHHHHHhCCCCHHHHHH
Confidence                      1455666677777777776655553

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.80  E-value=0.00076  Score=63.01  Aligned_cols=126  Identities=6%  Similarity=-0.034  Sum_probs=108.5

Q ss_pred             cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHH-HHHhhccchhH
Q 045108          110 TVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVI-NMISRNCSTLQ  188 (425)
Q Consensus       110 ~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll-~~l~~~~~~~~  188 (425)
                      ...++++.....+|..||++..+|...+++....+   .+.+++..+..++..+|++..+|....-++ ...+..     
T Consensus        53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g---~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~-----  124 (198)
T PRK10370         53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRN---DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQH-----  124 (198)
T ss_pred             hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC-----
Confidence            34578889999999999999999999999998874   789999999999999999999999888765 333321     


Q ss_pred             HhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChh
Q 045108          189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNS  246 (425)
Q Consensus       189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~S  246 (425)
                       ...+...++.++++.+|+|-.++..........+.  +.+.+...+++++.+|.+-+
T Consensus       125 -~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~--~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        125 -MTPQTREMIDKALALDANEVTALMLLASDAFMQAD--YAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             -CcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCcc
Confidence             13788899999999999999999999999887765  78999999999999888663

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=97.77  E-value=0.0013  Score=72.26  Aligned_cols=132  Identities=8%  Similarity=-0.086  Sum_probs=107.4

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHH----HHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchh
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILM----DELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTL  187 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~----~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~  187 (425)
                      .++++.....++..+|++..+++....++...+   .+.    +.+..+..++..+|.+..+|.....++...+.     
T Consensus       228 ~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G---~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~-----  299 (656)
T PRK15174        228 YQEAIQTGESALARGLDGAALRRSLGLAYYQSG---RSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQ-----  299 (656)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC-----
Confidence            467888899999999999999999888887764   344    36899999999999999999999888887665     


Q ss_pred             HHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 045108          188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMI  256 (425)
Q Consensus       188 ~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~  256 (425)
                         +++.+..+.++++.+|.|-.++.+..-++...+.  +++.++.+.+.+..+|.+...+.++..++.
T Consensus       300 ---~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~--~~eA~~~l~~al~~~P~~~~~~~~~a~al~  363 (656)
T PRK15174        300 ---NEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQ--YTAASDEFVQLAREKGVTSKWNRYAAAALL  363 (656)
T ss_pred             ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence               5788899999999999999999998888877765  678888899999999987654444444443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=97.76  E-value=0.0015  Score=74.78  Aligned_cols=156  Identities=6%  Similarity=-0.162  Sum_probs=126.6

Q ss_pred             chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108          111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~  190 (425)
                      ..++++.+...++..+|++..+...-...+...   ..+.+++..+..++..+|. ..+|.....++.+++.        
T Consensus       557 d~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~---Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~--------  624 (987)
T PRK09782        557 NGAARDRWLQQAEQRGLGDNALYWWLHAQRYIP---GQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHN--------  624 (987)
T ss_pred             CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCC--------
Confidence            346688888888999988876554322222222   4789999999999999996 8999888888887765        


Q ss_pred             HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCC
Q 045108          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNS  270 (425)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~  270 (425)
                      .++.+..+.++++.+|.|..++....+++...+.  .++.++.+.+.+..+|.|..+|..+..++..+ +          
T Consensus       625 ~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~--~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~l-G----------  691 (987)
T PRK09782        625 VPAAVSDLRAALELEPNNSNYQAALGYALWDSGD--IAQSREMLERAHKGLPDDPALIRQLAYVNQRL-D----------  691 (987)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-C----------
Confidence            6888999999999999999999999999988776  68889999999999999999999999988764 2          


Q ss_pred             CCchhhhhHHHHHHHHHHHHHHhhcCCCcc
Q 045108          271 SGYFVETYQVWKEELDWNESLIKRYVGREA  300 (425)
Q Consensus       271 ~~~~~~~~~~~~~EL~~~~~~I~~~p~neS  300 (425)
                               -+++.+.+..++|..+|++-.
T Consensus       692 ---------d~~eA~~~l~~Al~l~P~~a~  712 (987)
T PRK09782        692 ---------DMAATQHYARLVIDDIDNQAL  712 (987)
T ss_pred             ---------CHHHHHHHHHHHHhcCCCCch
Confidence                     156667788888888887644

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.62  E-value=0.0011  Score=70.58  Aligned_cols=137  Identities=14%  Similarity=0.080  Sum_probs=117.3

Q ss_pred             ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhH
Q 045108          109 DTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQ  188 (425)
Q Consensus       109 ~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~  188 (425)
                      .+-.+.++.+.+.+|.++|.||-||.-=+.+..+.   ..++.+.-.+.+++.+||.|..+=.|=.-+..+++.      
T Consensus       468 ~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kq---ek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~------  538 (638)
T KOG1126|consen  468 TEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQ---EKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKR------  538 (638)
T ss_pred             hHHHHhHHHHHHhhhcCCchhhHHHHhhhhheecc---chhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhh------
Confidence            34567899999999999999999999888777666   468889999999999999999999999988888876      


Q ss_pred             HhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108          189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWN  258 (425)
Q Consensus       189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l  258 (425)
                        -++.|.+.++|+..+|||-++=.||.-++..+++  ..++|.-.+++-..-|.+-+..+-...+..++
T Consensus       539 --~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~--~~eal~~LEeLk~~vP~es~v~~llgki~k~~  604 (638)
T KOG1126|consen  539 --KDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR--YVEALQELEELKELVPQESSVFALLGKIYKRL  604 (638)
T ss_pred             --hhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc--hHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence              4789999999999999999999999999987776  67788888888888888888876666665554

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=97.58  E-value=0.0074  Score=66.44  Aligned_cols=132  Identities=8%  Similarity=-0.104  Sum_probs=97.8

Q ss_pred             ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhh
Q 045108          147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ  226 (425)
Q Consensus       147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~  226 (425)
                      ..+.+.+..+..++..+|.+..++.....++...+...    ......+..+.++++.+|.+..+|....+++...+.  
T Consensus       226 g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~----eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~--  299 (656)
T PRK15174        226 GKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSR----EAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQ--  299 (656)
T ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCch----hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC--
Confidence            35677777888888888888888877766666554421    111246888999999999999999999998887765  


Q ss_pred             HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 045108          227 VLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHR  305 (425)
Q Consensus       227 ~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yr  305 (425)
                      +++.+..+++.+..+|.|..++.++..++... +                   -+++.+....+++..+|.+-. |.++
T Consensus       300 ~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~-G-------------------~~~eA~~~l~~al~~~P~~~~-~~~~  357 (656)
T PRK15174        300 NEKAIPLLQQSLATHPDLPYVRAMYARALRQV-G-------------------QYTAASDEFVQLAREKGVTSK-WNRY  357 (656)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-C-------------------CHHHHHHHHHHHHHhCccchH-HHHH
Confidence            67888999999999999998888877666542 1                   156667777888888888654 4443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.58  E-value=0.0043  Score=53.11  Aligned_cols=126  Identities=9%  Similarity=-0.021  Sum_probs=99.6

Q ss_pred             HHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHH
Q 045108          155 LSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQS  234 (425)
Q Consensus       155 ~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~  234 (425)
                      .+..++..+|++..+=.-+...+...+.        +.+.+....+++..+|.|-.+|..+..+...++.  +...+..+
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~   74 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQGR--------YDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKE--YEEAIDAY   74 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHccc--------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence            4678889999997764444444443332        6788899999999999999999999999877665  67888899


Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 045108          235 RNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSL  310 (425)
Q Consensus       235 ~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~  310 (425)
                      .+.+..+|.+...|.++..+.... +                   -+++.+.+.+..+..+|++...+-+.+.+..
T Consensus        75 ~~~~~~~p~~~~~~~~la~~~~~~-g-------------------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  130 (135)
T TIGR02552        75 ALAAALDPDDPRPYFHAAECLLAL-G-------------------EPESALKALDLAIEICGENPEYSELKERAEA  130 (135)
T ss_pred             HHHHhcCCCChHHHHHHHHHHHHc-C-------------------CHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            999999999999999988876653 1                   1567778888999999999998887766543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.54  E-value=0.0012  Score=70.27  Aligned_cols=126  Identities=14%  Similarity=0.046  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHH
Q 045108          150 MDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLN  229 (425)
Q Consensus       150 ~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~  229 (425)
                      +.++.....+|..+|..|-+|.--.-+..+..+        ++...-...+|++++|+|--.=+|-+-+..+++.  .+.
T Consensus       472 d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek--------~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~--~d~  541 (638)
T KOG1126|consen  472 DKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEK--------LEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKR--KDK  541 (638)
T ss_pred             HhHHHHHHhhhcCCchhhHHHHhhhhheeccch--------hhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhh--hhH
Confidence            344444444444444444444443333332221        2333334444445555444444444444444433  567


Q ss_pred             HHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 045108          230 ELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHR  305 (425)
Q Consensus       230 EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yr  305 (425)
                      .|++++++|.+||.|-.+=.+|..++..+..                    +.++|...+++-+.-|.+-++.+-.
T Consensus       542 AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~--------------------~~eal~~LEeLk~~vP~es~v~~ll  597 (638)
T KOG1126|consen  542 ALQLYEKAIHLDPKNPLCKYHRASILFSLGR--------------------YVEALQELEELKELVPQESSVFALL  597 (638)
T ss_pred             HHHHHHHHHhcCCCCchhHHHHHHHHHhhcc--------------------hHHHHHHHHHHHHhCcchHHHHHHH
Confidence            8999999999999999999999998887522                    3444555555555678877765544

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=97.52  E-value=0.0017  Score=74.25  Aligned_cols=124  Identities=9%  Similarity=0.000  Sum_probs=111.2

Q ss_pred             cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHH
Q 045108          110 TVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQW  189 (425)
Q Consensus       110 ~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~  189 (425)
                      ...++++.....++.++|+ ..+|.....++...+   .+++++..+..++..+|++..+++...+++...+.       
T Consensus       590 Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG---~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~-------  658 (987)
T PRK09782        590 GQPELALNDLTRSLNIAPS-ANAYVARATIYRQRH---NVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD-------  658 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-------
Confidence            3457889999999999997 899999998888874   78999999999999999999999999999988765       


Q ss_pred             hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhH
Q 045108          190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSC  247 (425)
Q Consensus       190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~Sa  247 (425)
                       .++.+.++.++++.+|.+..+|.++.+++..++.  +++.+..+++.+..+|.+...
T Consensus       659 -~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd--~~eA~~~l~~Al~l~P~~a~i  713 (987)
T PRK09782        659 -IAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD--MAATQHYARLVIDDIDNQALI  713 (987)
T ss_pred             -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCCchh
Confidence             5889999999999999999999999999999886  788899999999999977543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.51  E-value=0.0023  Score=65.20  Aligned_cols=101  Identities=9%  Similarity=-0.071  Sum_probs=88.4

Q ss_pred             chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108          111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~  190 (425)
                      ..++++.+...+|.++|++..+|..|..++...+   .+.+++..+..++..+|++..+|..+..++.+++.        
T Consensus        17 ~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g---~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~--------   85 (356)
T PLN03088         17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLG---NFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE--------   85 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC--------
Confidence            3478999999999999999999999999988874   79999999999999999999999999988888765        


Q ss_pred             HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhh
Q 045108          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFM  222 (425)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~  222 (425)
                      +...+..+.++++.+|.|-.+......+...+
T Consensus        86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            68899999999999999988766655554444

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.46  E-value=0.014  Score=60.64  Aligned_cols=188  Identities=11%  Similarity=0.084  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHH
Q 045108          115 VMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERE  194 (425)
Q Consensus       115 ~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~E  194 (425)
                      +-...+.+|.++|.+.....+|..++....   .-++-...++.+...+|.++.+++||..+..-+..        +++.
T Consensus       345 a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~---~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q--------~e~A  413 (606)
T KOG0547|consen  345 AQEDFDAAIKLDPAFNSLYIKRAAAYADEN---QSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQ--------YEEA  413 (606)
T ss_pred             hhhhHHHHHhcCcccchHHHHHHHHHhhhh---ccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHH--------HHHH
Confidence            334556777777777777666665554442   34556677778888888888888888766555443        5677


Q ss_pred             HHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCch
Q 045108          195 SELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYF  274 (425)
Q Consensus       195 L~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~  274 (425)
                      +.-..++...+|.|-.+.-..+.++-+.+.  +.+-+......++.=|+=--+.++-.-+|.-                 
T Consensus       414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k--~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD-----------------  474 (606)
T KOG0547|consen  414 IADFQKAISLDPENAYAYIQLCCALYRQHK--IAESMKTFEEAKKKFPNCPEVYNLFAEILTD-----------------  474 (606)
T ss_pred             HHHHHHHhhcChhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCCCCchHHHHHHHHHhh-----------------
Confidence            777778888888887777777766655443  5566666777777777777777766555432                 


Q ss_pred             hhhhHHHHHHHHHHHHHHhhcCC------CccHHHHHHHHHHHHHHHHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHH
Q 045108          275 VETYQVWKEELDWNESLIKRYVG------REALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLV  348 (425)
Q Consensus       275 ~~~~~~~~~EL~~~~~~I~~~p~------neSaW~yrr~Ll~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv  348 (425)
                         ..-+...+++.+.+|++.|.      |-..-.|.-.++..|.+                         -+.+=+.|+
T Consensus       475 ---qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~-------------------------d~~~a~~Ll  526 (606)
T KOG0547|consen  475 ---QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKE-------------------------DINQAENLL  526 (606)
T ss_pred             ---HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhh-------------------------hHHHHHHHH
Confidence               12367788888999999998      66666665555443321                         134556789


Q ss_pred             HhhhccCCCCcc
Q 045108          349 HSCSTTIPDANF  360 (425)
Q Consensus       349 ~~~~~~~p~d~~  360 (425)
                      ..|+..||.++.
T Consensus       527 ~KA~e~Dpkce~  538 (606)
T KOG0547|consen  527 RKAIELDPKCEQ  538 (606)
T ss_pred             HHHHccCchHHH
Confidence            999999997643

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.41  E-value=0.0049  Score=57.55  Aligned_cols=126  Identities=5%  Similarity=-0.019  Sum_probs=104.6

Q ss_pred             ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHH-Hhhchh
Q 045108          147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLV-SFMTRE  225 (425)
Q Consensus       147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll-~~~~~~  225 (425)
                      ...++.+..+...|..+|++...|.....+....++        +.+.+..+.++++.+|+|-.+|....-++ ...+..
T Consensus        53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~--------~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~  124 (198)
T PRK10370         53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRND--------YDNALLAYRQALQLRGENAELYAALATVLYYQAGQH  124 (198)
T ss_pred             hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC
Confidence            456788899999999999999999999888877665        68999999999999999999999988765 444432


Q ss_pred             hHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCcc
Q 045108          226 QVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREA  300 (425)
Q Consensus       226 ~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neS  300 (425)
                      ...+..+.+++.++.||.|..++..+....... +                   -+++.+.+.++++..+|.+-+
T Consensus       125 ~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~-g-------------------~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        125 MTPQTREMIDKALALDANEVTALMLLASDAFMQ-A-------------------DYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             CcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHc-C-------------------CHHHHHHHHHHHHhhCCCCcc
Confidence            347889999999999999999999998887653 2                   267778888888888877653

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=97.39  E-value=0.016  Score=67.86  Aligned_cols=139  Identities=8%  Similarity=-0.012  Sum_probs=109.3

Q ss_pred             chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhh--hhH-----HHHHHHHHhhc
Q 045108          111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQA--WSH-----RRWVINMISRN  183 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~--W~h-----Rrwll~~l~~~  183 (425)
                      ..++++.....+|..+|++..++.....++...+   .+++++..+..++..+|++...  |..     |-|+.......
T Consensus       284 ~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g---~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~  360 (1157)
T PRK11447        284 QGGKAIPELQQAVRANPKDSEALGALGQAYSQQG---DRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA  360 (1157)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence            3478999999999999999999999998888774   7899999999999999998743  421     22232221110


Q ss_pred             cchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 045108          184 CSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLM  255 (425)
Q Consensus       184 ~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll  255 (425)
                      .. ....+.+.+..+.++++.+|.+..++.....+....+.  +++.++.+++.+..+|.|..++.....+.
T Consensus       361 ~~-~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~--~~eA~~~y~~aL~~~p~~~~a~~~L~~l~  429 (1157)
T PRK11447        361 AL-KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD--YAAAERYYQQALRMDPGNTNAVRGLANLY  429 (1157)
T ss_pred             HH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            00 01236889999999999999999999999888877665  78899999999999999999987766654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.35  E-value=0.012  Score=65.03  Aligned_cols=117  Identities=9%  Similarity=-0.094  Sum_probs=103.0

Q ss_pred             chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108          111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~  190 (425)
                      ..++++.+...++.+.|+|..|+..+..+|....   .+++++.....+|...|+++++=+++.-++.+++.        
T Consensus       101 ~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~---~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~--------  169 (694)
T PRK15179        101 RSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQ---GIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQ--------  169 (694)
T ss_pred             CcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc---cHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc--------
Confidence            4588999999999999999999999999999884   78999999999999999999999999999999987        


Q ss_pred             HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhh
Q 045108          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGL  240 (425)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~  240 (425)
                      +++.+++.++++..+|.+-.+|.-+.-++..++.  .++....+.+.+..
T Consensus       170 ~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~--~~~A~~~~~~a~~~  217 (694)
T PRK15179        170 SEQADACFERLSRQHPEFENGYVGWAQSLTRRGA--LWRARDVLQAGLDA  217 (694)
T ss_pred             hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHh
Confidence            6899999999999999999999999999998875  34444444444443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.22  E-value=0.0065  Score=63.58  Aligned_cols=150  Identities=13%  Similarity=0.077  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHH
Q 045108           81 VYKAAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVL  160 (425)
Q Consensus        81 ly~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL  160 (425)
                      -|..|...|.+++..+|.....+    .....++++........++|+-.+.--.++.-....   .++..++.-.+.++
T Consensus       313 ~~~~ai~~~~kaLte~Rt~~~ls----~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~---gdy~~Av~~YteAI  385 (539)
T KOG0548|consen  313 DYEGAIKYYQKALTEHRTPDLLS----KLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKK---GDYPEAVKHYTEAI  385 (539)
T ss_pred             hHHHHHHHHHHHhhhhcCHHHHH----HHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhc---cCHHHHHHHHHHHH
Confidence            45666677777777666522111    122357788888999999999977777777655555   48999999999999


Q ss_pred             hhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhh
Q 045108          161 SHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGL  240 (425)
Q Consensus       161 ~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~  240 (425)
                      .++|++.++...|.-+..+|..        +...|.-|.++++.+|.+.-+|....-++..|..  +...++.+.+.++.
T Consensus       386 kr~P~Da~lYsNRAac~~kL~~--------~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~--ydkAleay~eale~  455 (539)
T KOG0548|consen  386 KRDPEDARLYSNRAACYLKLGE--------YPEALKDAKKCIELDPNFIKAYLRKGAALRAMKE--YDKALEAYQEALEL  455 (539)
T ss_pred             hcCCchhHHHHHHHHHHHHHhh--------HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhc
Confidence            9999999999999999999886        5788888999999999999999999999888765  88999999999999


Q ss_pred             cCCChhH
Q 045108          241 HVADNSC  247 (425)
Q Consensus       241 d~~N~Sa  247 (425)
                      ||+|--+
T Consensus       456 dp~~~e~  462 (539)
T KOG0548|consen  456 DPSNAEA  462 (539)
T ss_pred             CchhHHH
Confidence            9887643

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.22  E-value=0.047  Score=55.17  Aligned_cols=159  Identities=10%  Similarity=-0.110  Sum_probs=112.0

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhh--h-hHHHHHHHHHhhccchhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQA--W-SHRRWVINMISRNCSTLQ  188 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~--W-~hRrwll~~l~~~~~~~~  188 (425)
                      .++++.....++..+|.+..+++....++...   +.+++++.....++..+|.+...  . .+.......+..      
T Consensus       123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~------  193 (389)
T PRK11788        123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQE---KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR------  193 (389)
T ss_pred             HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHh---chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC------
Confidence            46788888999999999999999888877766   47899999999999988876431  1 111111111111      


Q ss_pred             HhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhH-HHHHHHHHHHhhccccccCC
Q 045108          189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSC-FHYHRRLMIWNLEGFCHIQD  267 (425)
Q Consensus       189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~Sa-W~yR~~ll~~l~~~~~~~~~  267 (425)
                      ..+.+.+.++.++++.+|.+..+|.....+....+.  +.+.++.+.+++..+|.+... +.....++... +       
T Consensus       194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~-g-------  263 (389)
T PRK11788        194 GDLDAARALLKKALAADPQCVRASILLGDLALAQGD--YAAAIEALERVEEQDPEYLSEVLPKLMECYQAL-G-------  263 (389)
T ss_pred             CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc-C-------
Confidence            236888899999999999999998887777766554  778899999999988876533 33322222221 1       


Q ss_pred             CCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccH
Q 045108          268 NNSSGYFVETYQVWKEELDWNESLIKRYVGREAL  301 (425)
Q Consensus       268 ~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSa  301 (425)
                                  -+++.+.+..+++..+|++..+
T Consensus       264 ------------~~~~A~~~l~~~~~~~p~~~~~  285 (389)
T PRK11788        264 ------------DEAEGLEFLRRALEEYPGADLL  285 (389)
T ss_pred             ------------CHHHHHHHHHHHHHhCCCchHH
Confidence                        2556677788888889977543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.20  E-value=0.0051  Score=62.64  Aligned_cols=103  Identities=8%  Similarity=-0.035  Sum_probs=92.7

Q ss_pred             ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhh
Q 045108          147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ  226 (425)
Q Consensus       147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~  226 (425)
                      ..+.+++.+++.+|..+|.++.+|.+|..++.+++.        +.+.+..+.++++.+|.+-.+|..++.++..++.  
T Consensus        16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~--------~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~--   85 (356)
T PLN03088         16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGN--------FTEAVADANKAIELDPSLAKAYLRKGTACMKLEE--   85 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC--
Confidence            478999999999999999999999999999888765        6899999999999999999999999999888776  


Q ss_pred             HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 045108          227 VLNELKQSRNWSGLHVADNSCFHYHRRLMIWNL  259 (425)
Q Consensus       227 ~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~  259 (425)
                      +...+..+++.+..+|.|-.+......+..++.
T Consensus        86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKIA  118 (356)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            789999999999999999998888877766653

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.04  E-value=0.028  Score=60.04  Aligned_cols=167  Identities=11%  Similarity=-0.042  Sum_probs=140.9

Q ss_pred             chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108          111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~  190 (425)
                      ...++.+++.++|.++|.|..+-|.-+.+-...   ..++++..|..++|..+|.+..+-+.-.-++++-++        
T Consensus       335 ~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~---~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgn--------  403 (966)
T KOG4626|consen  335 SVTEAVDCYNKALRLCPNHADAMNNLGNIYREQ---GKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGN--------  403 (966)
T ss_pred             chHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---ccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhccc--------
Confidence            457899999999999999999999888777765   367999999999999999999999999998887655        


Q ss_pred             HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCC
Q 045108          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNS  270 (425)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~  270 (425)
                      +.+.+.+...++++.|.--.|.+.++-.+..++.  ....++.+++.|..+|.--.|.+....+.+..            
T Consensus       404 l~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~--v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDs------------  469 (966)
T KOG4626|consen  404 LDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD--VSAAIQCYTRAIQINPTFAEAHSNLASIYKDS------------  469 (966)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh--HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhcc------------
Confidence            7899999999999999999999999999988876  68899999999999998888888776554321            


Q ss_pred             CCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 045108          271 SGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSL  310 (425)
Q Consensus       271 ~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~  310 (425)
                       |       -..+.++-...++.+.|.-.-+-+.+-..++
T Consensus       470 -G-------ni~~AI~sY~~aLklkPDfpdA~cNllh~lq  501 (966)
T KOG4626|consen  470 -G-------NIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ  501 (966)
T ss_pred             -C-------CcHHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence             1       1356677777888899999999998755444

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.02  E-value=0.12  Score=46.77  Aligned_cols=132  Identities=5%  Similarity=-0.015  Sum_probs=102.4

Q ss_pred             chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhC--CCchhhhhHHHHHHHHHhhccchhH
Q 045108          111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHS--PKSEQAWSHRRWVINMISRNCSTLQ  188 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~--PKsy~~W~hRrwll~~l~~~~~~~~  188 (425)
                      ..+++++....++..+|.+..++.....++...   ..+.+.+..+..++...  |....+|.....+....+.      
T Consensus        80 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------  150 (234)
T TIGR02521        80 ELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQ---GKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD------  150 (234)
T ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---ccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC------
Confidence            346788999999999999999999988888776   47899999999998743  5556666666655554433      


Q ss_pred             HhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 045108          189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLM  255 (425)
Q Consensus       189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll  255 (425)
                        +.+....+.++++.+|.+..+|.....+....+.  +++.+..+.+.+...+.+...+.....+.
T Consensus       151 --~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  213 (234)
T TIGR02521       151 --FDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ--YKDARAYLERYQQTYNQTAESLWLGIRIA  213 (234)
T ss_pred             --HHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence              5788899999999999998888888777766654  67788888888888777766665444333

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.97  E-value=0.0074  Score=59.27  Aligned_cols=104  Identities=8%  Similarity=-0.027  Sum_probs=92.7

Q ss_pred             ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhh
Q 045108          147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ  226 (425)
Q Consensus       147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~  226 (425)
                      .++++++...+.++..+|++......|--+..+|+.        +...++-|++++.+||.-.-||.--+.+.-.+++  
T Consensus        95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~--------~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk--  164 (304)
T KOG0553|consen   95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGE--------YEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK--  164 (304)
T ss_pred             hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcc--------hHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc--
Confidence            479999999999999999999999999999999986        5788999999999999888899888877776665  


Q ss_pred             HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhc
Q 045108          227 VLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLE  260 (425)
Q Consensus       227 ~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~  260 (425)
                      +...++.+++.+++||.|-+.|......-.++..
T Consensus       165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e  198 (304)
T KOG0553|consen  165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE  198 (304)
T ss_pred             HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence            6788899999999999999999999888777543

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.92  E-value=0.024  Score=60.55  Aligned_cols=185  Identities=10%  Similarity=-0.021  Sum_probs=142.0

Q ss_pred             chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108          111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~  190 (425)
                      .-+++|..+..++.+.|++..||.-....+...+   +++.+...+..+|+.||..|.+=.+-.-+++..+.        
T Consensus       131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~---~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Gr--------  199 (966)
T KOG4626|consen  131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQG---DLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGR--------  199 (966)
T ss_pred             hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcC---CCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcc--------
Confidence            3578999999999999999999999998888774   67889999999999999999999999988887665        


Q ss_pred             HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhcc-ccc-----
Q 045108          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEG-FCH-----  264 (425)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~-~~~-----  264 (425)
                      +.+.-.+..++++..|---=||+.-+-++..-+.  ....+...++.+++||.--.|+-....|++.+..- +..     
T Consensus       200 l~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Ge--i~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r  277 (966)
T KOG4626|consen  200 LEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGE--IWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLR  277 (966)
T ss_pred             cchhHHHHHHHHhhCCceeeeehhcchHHhhcch--HHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence            5677788899999999777899998888876554  67789999999999999989999999888765210 000     


Q ss_pred             --c--CCCCC-CCc----hhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 045108          265 --I--QDNNS-SGY----FVETYQVWKEELDWNESLIKRYVGREALWLHRRFLS  309 (425)
Q Consensus       265 --~--~~~~~-~~~----~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll  309 (425)
                        .  +.... -|.    +-+ ...++-.++...++|+..|+-.-+.+..-..+
T Consensus       278 Al~lrpn~A~a~gNla~iYye-qG~ldlAI~~Ykral~~~P~F~~Ay~NlanAL  330 (966)
T KOG4626|consen  278 ALNLRPNHAVAHGNLACIYYE-QGLLDLAIDTYKRALELQPNFPDAYNNLANAL  330 (966)
T ss_pred             HHhcCCcchhhccceEEEEec-cccHHHHHHHHHHHHhcCCCchHHHhHHHHHH
Confidence              0  00000 000    000 12456667778888888888888888754433

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.89  E-value=0.032  Score=58.19  Aligned_cols=162  Identities=9%  Similarity=-0.039  Sum_probs=128.6

Q ss_pred             chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108          111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~  190 (425)
                      -+++..+....+..+||++..+.++|+.+..-+   ..+++++.-.+++...+|.+.-..-....++=+..        -
T Consensus       375 ~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL---~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~--------k  443 (606)
T KOG0547|consen  375 QSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLL---QQYEEAIADFQKAISLDPENAYAYIQLCCALYRQH--------K  443 (606)
T ss_pred             ccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHH---HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHH--------H
Confidence            456777888999999999999999999877766   47899999999999999999766665555554433        2


Q ss_pred             HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCC------ChhHHHHHHHHHHHhhccccc
Q 045108          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVA------DNSCFHYHRRLMIWNLEGFCH  264 (425)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~------N~SaW~yR~~ll~~l~~~~~~  264 (425)
                      +.+-+...+.+.++.|++-.+.++-.-+|.-  ..++...++.+++.+.+.|+      |--..-+...++.+..     
T Consensus       444 ~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD--qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-----  516 (606)
T KOG0547|consen  444 IAESMKTFEEAKKKFPNCPEVYNLFAEILTD--QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-----  516 (606)
T ss_pred             HHHHHHHHHHHHHhCCCCchHHHHHHHHHhh--HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-----
Confidence            6778889999999999999999887766632  23578999999999999999      7777777776665532     


Q ss_pred             cCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHH
Q 045108          265 IQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLH  304 (425)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~y  304 (425)
                                    .-+...++.+.++|+.||.-+-+---
T Consensus       517 --------------~d~~~a~~Ll~KA~e~Dpkce~A~~t  542 (606)
T KOG0547|consen  517 --------------EDINQAENLLRKAIELDPKCEQAYET  542 (606)
T ss_pred             --------------hhHHHHHHHHHHHHccCchHHHHHHH
Confidence                          12567788899999999997766543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=96.86  E-value=0.15  Score=51.54  Aligned_cols=121  Identities=8%  Similarity=-0.003  Sum_probs=76.5

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCch----hhhhHHHHHHHHHhhccchh
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE----QAWSHRRWVINMISRNCSTL  187 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy----~~W~hRrwll~~l~~~~~~~  187 (425)
                      .++++.....++..+|++..+|.....++...   ..+.+.+.....++...+...    .+|.....++.+.+      
T Consensus        51 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g------  121 (389)
T PRK11788         51 PDKAIDLFIEMLKVDPETVELHLALGNLFRRR---GEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG------  121 (389)
T ss_pred             hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc---CcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC------
Confidence            35688888899999999888888888777665   367778888777776432221    22222222222221      


Q ss_pred             HHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCh
Q 045108          188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADN  245 (425)
Q Consensus       188 ~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~  245 (425)
                        .+...+.++.++++.+|.+..++.....+....+.  +++.++...+++..++.+.
T Consensus       122 --~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~~~~~  175 (389)
T PRK11788        122 --LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKD--WQKAIDVAERLEKLGGDSL  175 (389)
T ss_pred             --CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhch--HHHHHHHHHHHHHhcCCcc
Confidence              25666677777777777777666666555554443  5666666777776666553

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=96.84  E-value=0.029  Score=54.52  Aligned_cols=133  Identities=14%  Similarity=0.056  Sum_probs=99.5

Q ss_pred             hHHHHHHHHHHHHhC--CccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHH
Q 045108          112 AIEVMIHSKALLLLS--CDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQW  189 (425)
Q Consensus       112 ~~~~L~~t~~lLl~n--pe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~  189 (425)
                      .+++.+..+.+....  +....+|..+..+....+   ...+++.+...+|..+|++..++..-.|++...+.       
T Consensus       126 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G---~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~-------  195 (280)
T PF13429_consen  126 YDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG---DPDKALRDYRKALELDPDDPDARNALAWLLIDMGD-------  195 (280)
T ss_dssp             HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC---HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH-------
T ss_pred             HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-------
Confidence            345555555555444  678899999999988874   77999999999999999999999998888765443       


Q ss_pred             hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 045108          190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIW  257 (425)
Q Consensus       190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~  257 (425)
                       ..+..+++....+..|.|-..|..-.++...++.  .++.+.+..+.+..+|.|.....+...++..
T Consensus       196 -~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~--~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~  260 (280)
T PF13429_consen  196 -YDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR--YEEALEYLEKALKLNPDDPLWLLAYADALEQ  260 (280)
T ss_dssp             -HHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT---HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-
T ss_pred             -hHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc--ccccccccccccccccccccccccccccccc
Confidence             2334556777777778888899999999988886  6899999999999999999988887777654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=96.82  E-value=0.15  Score=56.63  Aligned_cols=133  Identities=8%  Similarity=-0.133  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHH
Q 045108          113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIE  192 (425)
Q Consensus       113 ~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~  192 (425)
                      .+.|.-......--|.+..+-.-=.++.++.+   .+++.+.+...++...|++..++.++.-+|.+...        ++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g---~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~--------~e  137 (694)
T PRK15179         69 AAALPELLDYVRRYPHTELFQVLVARALEAAH---RSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQG--------IE  137 (694)
T ss_pred             HhhHHHHHHHHHhccccHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc--------HH
Confidence            33444444444556666666655567777764   78999999999999999999999999999998876        79


Q ss_pred             HHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108          193 RESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWN  258 (425)
Q Consensus       193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l  258 (425)
                      +.+..+++++..+|.|..+=+++.-++..++.  .++.++.+++.+..||.+-.+|--+..++...
T Consensus       138 eA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~--~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~  201 (694)
T PRK15179        138 AGRAEIELYFSGGSSSAREILLEAKSWDEIGQ--SEQADACFERLSRQHPEFENGYVGWAQSLTRR  201 (694)
T ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc--hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999987  78999999999999999999999999998764

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.78  E-value=0.011  Score=44.69  Aligned_cols=68  Identities=15%  Similarity=0.120  Sum_probs=58.6

Q ss_pred             cHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcC
Q 045108          129 FATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK  206 (425)
Q Consensus       129 ~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p  206 (425)
                      ...+|..++.++...   ..+.+++..++.++..+|+++.+|..|.-+...+++       .+.+.++.+.++++.+|
T Consensus         2 ~a~~~~~~g~~~~~~---~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~-------~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQ---GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGK-------DYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTT-------HHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCc-------cHHHHHHHHHHHHHcCc
Confidence            467888898888877   479999999999999999999999999999888762       16788999999999988

...

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=96.78  E-value=0.48  Score=44.46  Aligned_cols=143  Identities=9%  Similarity=-0.080  Sum_probs=101.0

Q ss_pred             hHHHHHHHHHHHHhCCccH---HHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchh---hhhHHHHHHHHHhhccc
Q 045108          112 AIEVMIHSKALLLLSCDFA---TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQ---AWSHRRWVINMISRNCS  185 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~---TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~---~W~hRrwll~~l~~~~~  185 (425)
                      .++++.....++..+|++.   .+|.....++...   ..+++++.....++..+|+++.   +|..+..+.........
T Consensus        49 ~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~---~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~  125 (235)
T TIGR03302        49 YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKS---GDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVD  125 (235)
T ss_pred             HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhccccc
Confidence            3678889999999999876   5778888888777   4789999999999999999887   57777776655411000


Q ss_pred             hhHHhHHHHHHHHHHHHHhcCCchhhhhH---HHHHHHhh------------chhhHHHHHHHHHHHHhhcCCC---hhH
Q 045108          186 TLQWIIERESELVEKIAERSKMNYRAWNH---RCWLVSFM------------TREQVLNELKQSRNWSGLHVAD---NSC  247 (425)
Q Consensus       186 ~~~~~~~~EL~~~~~~l~~~pkNY~AW~h---R~wll~~~------------~~~~~~~EL~~~~~~i~~d~~N---~Sa  247 (425)
                      .-.......+..+.++++.+|.+-.+|.=   ..++....            ....+...+....+.+...|.+   -.+
T Consensus       126 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a  205 (235)
T TIGR03302       126 RDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEA  205 (235)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHH
Confidence            00134678899999999999999776522   22222111            1123677889999999987764   357


Q ss_pred             HHHHHHHHHH
Q 045108          248 FHYHRRLMIW  257 (425)
Q Consensus       248 W~yR~~ll~~  257 (425)
                      |..+..+...
T Consensus       206 ~~~l~~~~~~  215 (235)
T TIGR03302       206 LARLVEAYLK  215 (235)
T ss_pred             HHHHHHHHHH
Confidence            7766666554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=96.74  E-value=0.19  Score=50.64  Aligned_cols=134  Identities=15%  Similarity=0.030  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHH
Q 045108          113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIE  192 (425)
Q Consensus       113 ~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~  192 (425)
                      .++|..+-.++..||++|.|..-|.-+..+++   .-.-.+.-++.+|...|+++.+=..|.-++.+.+.        ++
T Consensus        55 sDALt~yHaAve~dp~~Y~aifrRaT~yLAmG---ksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge--------le  123 (504)
T KOG0624|consen   55 SDALTHYHAAVEGDPNNYQAIFRRATVYLAMG---KSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE--------LE  123 (504)
T ss_pred             HHHHHHHHHHHcCCchhHHHHHHHHHHHhhhc---CCccchhhHHHHHhcCccHHHHHHHhchhhhhccc--------HH
Confidence            45788889999999999999988888888875   44678888899999999999999999999887765        45


Q ss_pred             HHHHHHHHHHHhcCCchh-------------hhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 045108          193 RESELVEKIAERSKMNYR-------------AWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIW  257 (425)
Q Consensus       193 ~EL~~~~~~l~~~pkNY~-------------AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~  257 (425)
                      ..-.-...++..+|.|-.             -|..|..+.+..+.-+....+++++..++.-|=|-|-..+|.-.+-.
T Consensus       124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~  201 (504)
T KOG0624|consen  124 QAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIA  201 (504)
T ss_pred             HHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHh
Confidence            555556667777775543             35555555555544456788888999999888888888888766543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=96.71  E-value=0.044  Score=53.26  Aligned_cols=134  Identities=13%  Similarity=0.031  Sum_probs=99.0

Q ss_pred             ccHHHHHHHHHHHHhh--CCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhch
Q 045108          147 PILMDELRLSAVVLSH--SPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR  224 (425)
Q Consensus       147 ~~l~~EL~~~~~lL~~--~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~  224 (425)
                      ..+.+...+++.+...  .|.++.+|.++..+..+.+.        ..+.+.++.++++.+|.|-.++..-.|++-..+.
T Consensus       124 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~--------~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~  195 (280)
T PF13429_consen  124 GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD--------PDKALRDYRKALELDPDDPDARNALAWLLIDMGD  195 (280)
T ss_dssp             T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH--------HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH
T ss_pred             hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Confidence            3566667777776543  47899999999998888765        5889999999999999999999999999876664


Q ss_pred             hhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHH
Q 045108          225 EQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLH  304 (425)
Q Consensus       225 ~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~y  304 (425)
                        ..+..+.+..+....|+|...|.....+...+ +                   ..++.+.+..+++..+|.|.....+
T Consensus       196 --~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l-g-------------------~~~~Al~~~~~~~~~~p~d~~~~~~  253 (280)
T PF13429_consen  196 --YDEAREALKRLLKAAPDDPDLWDALAAAYLQL-G-------------------RYEEALEYLEKALKLNPDDPLWLLA  253 (280)
T ss_dssp             --HHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH-T--------------------HHHHHHHHHHHHHHSTT-HHHHHH
T ss_pred             --hHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc-c-------------------ccccccccccccccccccccccccc
Confidence              44556677777777788888898888777765 2                   2578899999999999999988877


Q ss_pred             HHHHHH
Q 045108          305 RRFLSL  310 (425)
Q Consensus       305 rr~Ll~  310 (425)
                      .-.++.
T Consensus       254 ~a~~l~  259 (280)
T PF13429_consen  254 YADALE  259 (280)
T ss_dssp             HHHHHT
T ss_pred             cccccc
Confidence            655554

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=96.71  E-value=0.072  Score=58.99  Aligned_cols=118  Identities=10%  Similarity=0.038  Sum_probs=99.2

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .+++......+|..+|.++.||.+=+.+-+..+   +.++.+.+--.+-..+|+++..|.+-.-+..+++.        +
T Consensus       155 ~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrG---d~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~--------i  223 (895)
T KOG2076|consen  155 LEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRG---DIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN--------I  223 (895)
T ss_pred             HHHHHHHHHHHHHhCccchhhHHHHHHHHHHcc---cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc--------H
Confidence            478999999999999999999999999999884   88999999999999999999999887777666543        7


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcC
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHV  242 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~  242 (425)
                      ..+.-+..+++..+|.|+.-=.-|.-+.++++.  ...++.-..+++..+|
T Consensus       224 ~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~--~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  224 NQARYCYSRAIQANPSNWELIYERSSLYQKTGD--LKRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCh--HHHHHHHHHHHHhhCC
Confidence            889999999999999997655556777777775  5566777777777766

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.62  E-value=0.14  Score=60.09  Aligned_cols=135  Identities=10%  Similarity=0.039  Sum_probs=104.1

Q ss_pred             ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchh--hhhH-----HHHHH
Q 045108          147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYR--AWNH-----RCWLV  219 (425)
Q Consensus       147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~--AW~h-----R~wll  219 (425)
                      ..+++++..+..++..+|++..+|.....++.+.+.        +++.+..+.++++.+|.+..  .|..     +.|+.
T Consensus       283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~--------~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~  354 (1157)
T PRK11447        283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGD--------RARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL  354 (1157)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence            478999999999999999999999988888777654        68899999999999998764  3421     23333


Q ss_pred             Hhh-----chhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhh
Q 045108          220 SFM-----TREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKR  294 (425)
Q Consensus       220 ~~~-----~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~  294 (425)
                      ...     ....+.+.+..+.+.+..+|.|..++..+..+.... +                   .+++.+++..+++..
T Consensus       355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~-g-------------------~~~eA~~~y~~aL~~  414 (1157)
T PRK11447        355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMAR-K-------------------DYAAAERYYQQALRM  414 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-C-------------------CHHHHHHHHHHHHHh
Confidence            221     122477889999999999999998888777666542 1                   267778888999999


Q ss_pred             cCCCccHHHHHHHHH
Q 045108          295 YVGREALWLHRRFLS  309 (425)
Q Consensus       295 ~p~neSaW~yrr~Ll  309 (425)
                      +|+|..+|.....+.
T Consensus       415 ~p~~~~a~~~L~~l~  429 (1157)
T PRK11447        415 DPGNTNAVRGLANLY  429 (1157)
T ss_pred             CCCCHHHHHHHHHHH
Confidence            999999987655443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=96.60  E-value=0.076  Score=59.56  Aligned_cols=131  Identities=9%  Similarity=-0.025  Sum_probs=92.5

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .+++++....++..+|....++.....++...+   .+.+++.++..++..+|.+..+|....-++...+.        +
T Consensus        31 ~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g---~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~--------~   99 (765)
T PRK10049         31 DAEVITVYNRYRVHMQLPARGYAAVAVAYRNLK---QWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQ--------Y   99 (765)
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--------H
Confidence            456667777777777777777777777766663   67778888888888888887777544443333322        5


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMI  256 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~  256 (425)
                      .+.+..+.++++.+|.|.. |.-...++...+.  ....+..+++++..+|.|..++.....++.
T Consensus       100 ~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~--~~~Al~~l~~al~~~P~~~~~~~~la~~l~  161 (765)
T PRK10049        100 DEALVKAKQLVSGAPDKAN-LLALAYVYKRAGR--HWDELRAMTQALPRAPQTQQYPTEYVQALR  161 (765)
T ss_pred             HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            6777788888888888877 7777777666554  567788888888888888777776655543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=96.59  E-value=0.16  Score=57.06  Aligned_cols=164  Identities=8%  Similarity=-0.066  Sum_probs=120.0

Q ss_pred             hHHHHHHHHHHHHhCCccHH----HHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhh---------------H
Q 045108          112 AIEVMIHSKALLLLSCDFAT----AWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWS---------------H  172 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~T----aWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~---------------h  172 (425)
                      .++++.....++..+|.+..    +.......+...   ..+++++..+..++..+|+...++.               .
T Consensus       288 ~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~---g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~  364 (765)
T PRK10049        288 PEKAQSILTELFYHPETIADLSDEELADLFYSLLES---ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSL  364 (765)
T ss_pred             cHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc---ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHH
Confidence            56677778888877776632    222222222222   4688889999999988887655442               1


Q ss_pred             HHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHH
Q 045108          173 RRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHR  252 (425)
Q Consensus       173 Rrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~  252 (425)
                      +..++...        ..+++.++++.+++...|.|..+|..+.-+....+.  ..+.++.+++.+..+|.|...+..+.
T Consensus       365 ~a~~l~~~--------g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~--~~~A~~~l~~al~l~Pd~~~l~~~~a  434 (765)
T PRK10049        365 LSQVAKYS--------NDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW--PRAAENELKKAEVLEPRNINLEVEQA  434 (765)
T ss_pred             HHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhCCCChHHHHHHH
Confidence            11111111        236888999999999999999999999999887776  68889999999999999999888887


Q ss_pred             HHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 045108          253 RLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFL  308 (425)
Q Consensus       253 ~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~L  308 (425)
                      .+.... +                   -+++.....+++|..+|.|..+=.+.|-.
T Consensus       435 ~~al~~-~-------------------~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~  470 (765)
T PRK10049        435 WTALDL-Q-------------------EWRQMDVLTDDVVAREPQDPGVQRLARAR  470 (765)
T ss_pred             HHHHHh-C-------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            765543 1                   26777888899999999999887776654

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.54  E-value=0.018  Score=56.66  Aligned_cols=104  Identities=14%  Similarity=0.015  Sum_probs=90.9

Q ss_pred             cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHH
Q 045108          110 TVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQW  189 (425)
Q Consensus       110 ~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~  189 (425)
                      ...+++++.++.+|.++|.+....-.|...+.+++   .+..+++-|..+|.++|.+..+|.--..+...+++       
T Consensus        95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg---~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk-------  164 (304)
T KOG0553|consen   95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG---EYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK-------  164 (304)
T ss_pred             hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc---chHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc-------
Confidence            35678999999999999999999999999999885   68999999999999999999999877766666554       


Q ss_pred             hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhch
Q 045108          190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR  224 (425)
Q Consensus       190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~  224 (425)
                       +.+.++...++|+.+|.|-..|++-.|+-..+..
T Consensus       165 -~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e  198 (304)
T KOG0553|consen  165 -YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE  198 (304)
T ss_pred             -HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence             5788888999999999999999998888776653

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.36  E-value=0.033  Score=42.00  Aligned_cols=68  Identities=15%  Similarity=0.083  Sum_probs=58.3

Q ss_pred             chhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcC
Q 045108          166 SEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHV  242 (425)
Q Consensus       166 sy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~  242 (425)
                      +..+|..+.-++...++        +.+.+..+.++++.+|.+..+|..++-+...++. .+.+.++.+++.++.||
T Consensus         2 ~a~~~~~~g~~~~~~~~--------~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~-~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGD--------YEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGK-DYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTH--------HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHcCc
Confidence            45678888777776654        7899999999999999999999999999988872 37888999999999987

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.34  E-value=0.13  Score=38.58  Aligned_cols=97  Identities=13%  Similarity=0.009  Sum_probs=67.4

Q ss_pred             HHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhh
Q 045108          133 WNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAW  212 (425)
Q Consensus       133 Wn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW  212 (425)
                      |..+..+....   ..+.+.+..+..++...|++..+|..+..++.....        +...+..+..++...|.+..+|
T Consensus         3 ~~~~a~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~   71 (100)
T cd00189           3 LLNLGNLYYKL---GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK--------YEEALEDYEKALELDPDNAKAY   71 (100)
T ss_pred             HHHHHHHHHHH---hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhCCCcchhHH
Confidence            34444444443   367888888888888888888888887777766543        5777788888888888888777


Q ss_pred             hHHHHHHHhhchhhHHHHHHHHHHHHhhcC
Q 045108          213 NHRCWLVSFMTREQVLNELKQSRNWSGLHV  242 (425)
Q Consensus       213 ~hR~wll~~~~~~~~~~EL~~~~~~i~~d~  242 (425)
                      .....+....+.  +......+.+.+..+|
T Consensus        72 ~~~~~~~~~~~~--~~~a~~~~~~~~~~~~   99 (100)
T cd00189          72 YNLGLAYYKLGK--YEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHHHHHh--HHHHHHHHHHHHccCC
Confidence            776666655443  4555666666666554

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=96.15  E-value=0.9  Score=42.61  Aligned_cols=167  Identities=7%  Similarity=-0.043  Sum_probs=107.0

Q ss_pred             cHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCch---hhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhc
Q 045108          129 FATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE---QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS  205 (425)
Q Consensus       129 ~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy---~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~  205 (425)
                      ...++..+...+...   ..+.+++..+..++..+|.++   .+|.+..-++...++        ++..+....++++.+
T Consensus        32 ~~~~~~~~g~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~--------~~~A~~~~~~~l~~~  100 (235)
T TIGR03302        32 PAEELYEEAKEALDS---GDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGD--------YAEAIAAADRFIRLH  100 (235)
T ss_pred             CHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHC
Confidence            444555555555554   368999999999999999987   466666666555443        789999999999999


Q ss_pred             CCchh---hhhHHHHHHHhhc------hhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhh
Q 045108          206 KMNYR---AWNHRCWLVSFMT------REQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVE  276 (425)
Q Consensus       206 pkNY~---AW~hR~wll~~~~------~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~  276 (425)
                      |.+..   +|..++.+.....      .......+...++.+..+|.+-.++.-...+... ......  .....+..-.
T Consensus       101 p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~-~~~~~~--~~~~~a~~~~  177 (235)
T TIGR03302       101 PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL-RNRLAG--KELYVARFYL  177 (235)
T ss_pred             cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH-HHHHHH--HHHHHHHHHH
Confidence            99887   6888888775541      1246778999999999999998887444322110 000000  0000000000


Q ss_pred             hhHHHHHHHHHHHHHHhhcCCCc---cHHHHHHHHH
Q 045108          277 TYQVWKEELDWNESLIKRYVGRE---ALWLHRRFLS  309 (425)
Q Consensus       277 ~~~~~~~EL~~~~~~I~~~p~ne---SaW~yrr~Ll  309 (425)
                      ...-+.+.+.....++..+|++.   .+|..+..+.
T Consensus       178 ~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~  213 (235)
T TIGR03302       178 KRGAYVAAINRFETVVENYPDTPATEEALARLVEAY  213 (235)
T ss_pred             HcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHH
Confidence            01125677888899999988753   4666544333

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK14574 hmsH outer membrane protein; Provisional

Probab=96.11  E-value=0.35  Score=54.63  Aligned_cols=118  Identities=6%  Similarity=-0.157  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHhCCccHHHHH-HHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHH--HHHHHhhccchhHH
Q 045108          113 IEVMIHSKALLLLSCDFATAWN-SRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRW--VINMISRNCSTLQW  189 (425)
Q Consensus       113 ~~~L~~t~~lLl~npe~~TaWn-~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrw--ll~~l~~~~~~~~~  189 (425)
                      ..+++....+|..+|++..+.+ +-..... .   ....+++..+++++  .|.+......+..  +....+        
T Consensus        51 ~~Al~~L~qaL~~~P~~~~av~dll~l~~~-~---G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~g--------  116 (822)
T PRK14574         51 APVLDYLQEESKAGPLQSGQVDDWLQIAGW-A---GRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEK--------  116 (822)
T ss_pred             HHHHHHHHHHHhhCccchhhHHHHHHHHHH-c---CCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcC--------
Confidence            4677777777777777743222 1111111 1   24456666666666  2222222222211  111111        


Q ss_pred             hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChh
Q 045108          190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNS  246 (425)
Q Consensus       190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~S  246 (425)
                      .+.+.++++.++++.+|.|-.++..-  .+........++.++.+.++...+|.+..
T Consensus       117 dyd~Aiely~kaL~~dP~n~~~l~gL--a~~y~~~~q~~eAl~~l~~l~~~dp~~~~  171 (822)
T PRK14574        117 RWDQALALWQSSLKKDPTNPDLISGM--IMTQADAGRGGVVLKQATELAERDPTVQN  171 (822)
T ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHH--HHHHhhcCCHHHHHHHHHHhcccCcchHH
Confidence            24566666666666666666665422  22111112345556666666666666433

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=95.50  E-value=0.22  Score=37.22  Aligned_cols=85  Identities=18%  Similarity=0.061  Sum_probs=68.7

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++++.....++..+|++..+|..+..++...   ..+++.+..+..++..+|++..+|.....+....+.        +
T Consensus        16 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~   84 (100)
T cd00189          16 YDEALEYYEKALELDPDNADAYYNLAAAYYKL---GKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK--------Y   84 (100)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh--------H
Confidence            36688888999999999999999988888776   367899999999999999999888877777666544        4


Q ss_pred             HHHHHHHHHHHHhcCC
Q 045108          192 ERESELVEKIAERSKM  207 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pk  207 (425)
                      ......+..+++.+|.
T Consensus        85 ~~a~~~~~~~~~~~~~  100 (100)
T cd00189          85 EEALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHHHHHHHccCCC
Confidence            6667777777777763

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=95.35  E-value=0.31  Score=43.96  Aligned_cols=115  Identities=8%  Similarity=-0.043  Sum_probs=82.6

Q ss_pred             HHHHHhCCccHHHH--HHHHHHHHccCCcccHHHHHHHHHHHHhhCCCch---hhhhHHHHHHHHHhhccchhHHhHHHH
Q 045108          120 KALLLLSCDFATAW--NSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE---QAWSHRRWVINMISRNCSTLQWIIERE  194 (425)
Q Consensus       120 ~~lLl~npe~~TaW--n~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy---~~W~hRrwll~~l~~~~~~~~~~~~~E  194 (425)
                      ..++..+++...++  ..+...+...   ..+++++..+..++..+|+..   .+|.....+..+++.        +++.
T Consensus        23 ~~~~~~~~~~~~a~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A   91 (172)
T PRK02603         23 LKILPINKKAKEAFVYYRDGMSAQAD---GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE--------HDKA   91 (172)
T ss_pred             HHHcccccHhhhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC--------HHHH
Confidence            44445555555544  4455555555   478999999999999887653   566666666666554        6888


Q ss_pred             HHHHHHHHHhcCCchhhhhHHHHHHHhhchh------------hHHHHHHHHHHHHhhcCCCh
Q 045108          195 SELVEKIAERSKMNYRAWNHRCWLVSFMTRE------------QVLNELKQSRNWSGLHVADN  245 (425)
Q Consensus       195 L~~~~~~l~~~pkNY~AW~hR~wll~~~~~~------------~~~~EL~~~~~~i~~d~~N~  245 (425)
                      +..+.++++.+|.+..++...+++....+..            .+...++...+.+..+|.|+
T Consensus        92 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603         92 LEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence            8999999999999999999999988776531            24556777777777888773

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=95.23  E-value=1.6  Score=43.48  Aligned_cols=101  Identities=11%  Similarity=0.009  Sum_probs=44.5

Q ss_pred             cHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhH
Q 045108          148 ILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQV  227 (425)
Q Consensus       148 ~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~  227 (425)
                      ++.+.+.++..++..+|++..+|.. ......++....    ........+......+|...++.....+++...+.  +
T Consensus        58 ~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~--~  130 (355)
T cd05804          58 DLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSG----MRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ--Y  130 (355)
T ss_pred             CHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhccccc----CchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC--H
Confidence            4556666666666666666655543 222211111000    01111112222233444444444444444444333  4


Q ss_pred             HHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 045108          228 LNELKQSRNWSGLHVADNSCFHYHRRLM  255 (425)
Q Consensus       228 ~~EL~~~~~~i~~d~~N~SaW~yR~~ll  255 (425)
                      .+....+.+.+..+|.|..+++....++
T Consensus       131 ~~A~~~~~~al~~~p~~~~~~~~la~i~  158 (355)
T cd05804         131 DRAEEAARRALELNPDDAWAVHAVAHVL  158 (355)
T ss_pred             HHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence            4555555555555555555555544443

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=95.17  E-value=4.2  Score=46.19  Aligned_cols=131  Identities=15%  Similarity=0.038  Sum_probs=96.5

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHH--HHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSR--KLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQW  189 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~R--r~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~  189 (425)
                      .++++...++++  +|++....-.+  ..+....   +.+.+++.++..++..+|+++.++..-  ++.....      .
T Consensus        84 ~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~---gdyd~Aiely~kaL~~dP~n~~~l~gL--a~~y~~~------~  150 (822)
T PRK14574         84 DQEVIDVYERYQ--SSMNISSRGLASAARAYRNE---KRWDQALALWQSSLKKDPTNPDLISGM--IMTQADA------G  150 (822)
T ss_pred             cHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHH--HHHHhhc------C
Confidence            467888888888  66665555555  3355554   478999999999999999999999633  2222211      1


Q ss_pred             hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108          190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWN  258 (425)
Q Consensus       190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l  258 (425)
                      -.++.++.+.++...+|.|... .-+..+...+..  ..++++..++++..+|.|.....-+...+.+.
T Consensus       151 q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~--~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~  216 (822)
T PRK14574        151 RGGVVLKQATELAERDPTVQNY-MTLSYLNRATDR--NYDALQASSEAVRLAPTSEEVLKNHLEILQRN  216 (822)
T ss_pred             CHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcch--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            2578999999999999998776 666666654333  44599999999999999999987776666553

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=95.12  E-value=0.11  Score=38.69  Aligned_cols=54  Identities=15%  Similarity=0.171  Sum_probs=41.7

Q ss_pred             ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCc
Q 045108          147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN  208 (425)
Q Consensus       147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN  208 (425)
                      +.+++.+..+..++..+|+++.+|.....++.+.+.        +.+.+....++++.+|.|
T Consensus        11 g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen   11 GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGR--------YDEALAYYERALELDPDN   64 (65)
T ss_dssp             THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHSTT-
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHCcCC
Confidence            367888888888888888888888888888877655        577778888888888865

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=95.00  E-value=3  Score=42.30  Aligned_cols=164  Identities=12%  Similarity=0.028  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchh-------------hhhHHHHHHHH
Q 045108          113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQ-------------AWSHRRWVINM  179 (425)
Q Consensus       113 ~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~-------------~W~hRrwll~~  179 (425)
                      ..+|.-...+|.+-|+++.|=..|+.++.+.+   .++++..-++.+|..+|.+-+             -|+-|..+.+.
T Consensus        89 k~al~Dl~rVlelKpDF~~ARiQRg~vllK~G---ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~  165 (504)
T KOG0624|consen   89 KAALQDLSRVLELKPDFMAARIQRGVVLLKQG---ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSA  165 (504)
T ss_pred             ccchhhHHHHHhcCccHHHHHHHhchhhhhcc---cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHH
Confidence            44677778899999999999999999988774   789999999999999995543             34444433333


Q ss_pred             HhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 045108          180 ISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNL  259 (425)
Q Consensus       180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~  259 (425)
                      ...      ......++++..+++..|=.-....+|.-++-.-+.  ....+..+...-++-..|.-+..--..|+-.+ 
T Consensus       166 ~~~------GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e--~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v-  236 (504)
T KOG0624|consen  166 SGS------GDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGE--PKKAIHDLKQASKLSQDNTEGHYKISQLLYTV-  236 (504)
T ss_pred             hcC------CchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCc--HHHHHHHHHHHHhccccchHHHHHHHHHHHhh-
Confidence            322      236788999999999999776666677666544333  34555555555555555555544434443332 


Q ss_pred             ccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHH
Q 045108          260 EGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRF  307 (425)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~  307 (425)
                      +                   -.+.-|.-+.+.+..+|.|-+-.-+...
T Consensus       237 g-------------------d~~~sL~~iRECLKldpdHK~Cf~~YKk  265 (504)
T KOG0624|consen  237 G-------------------DAENSLKEIRECLKLDPDHKLCFPFYKK  265 (504)
T ss_pred             h-------------------hHHHHHHHHHHHHccCcchhhHHHHHHH
Confidence            1                   0233455556667778888877765543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=94.95  E-value=0.57  Score=44.80  Aligned_cols=123  Identities=8%  Similarity=-0.128  Sum_probs=101.1

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      ...+.+..+++|..+|++|-+|..|..+.+..+   ..+.+-+-..++|+.+|++-.+-|.=.|.|-..+.        +
T Consensus        51 ~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~G---e~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~--------~  119 (250)
T COG3063          51 YAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLG---ENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR--------P  119 (250)
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC---ChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC--------h
Confidence            466778899999999999999999999999885   56777788899999999999999988888765554        5


Q ss_pred             HHHHHHHHHHHH--hcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhH
Q 045108          192 ERESELVEKIAE--RSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSC  247 (425)
Q Consensus       192 ~~EL~~~~~~l~--~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~Sa  247 (425)
                      ++.+...++++.  .+|--+-.|..-+||--+++.  ....-++.++.+..||.+-.+
T Consensus       120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq--~~~A~~~l~raL~~dp~~~~~  175 (250)
T COG3063         120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ--FDQAEEYLKRALELDPQFPPA  175 (250)
T ss_pred             HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC--chhHHHHHHHHHHhCcCCChH
Confidence            777887777776  456666789999999877775  456777888999999887665

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=94.93  E-value=0.44  Score=38.94  Aligned_cols=88  Identities=13%  Similarity=0.026  Sum_probs=71.9

Q ss_pred             hHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc---hhhhhHHHHHHHHHhhccc
Q 045108          112 AIEVMIHSKALLLLSCDF---ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS---EQAWSHRRWVINMISRNCS  185 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~---~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs---y~~W~hRrwll~~l~~~~~  185 (425)
                      .+++++....++..+|++   .+++..+..++...   ..+.+++..+..++..+|.+   ..+|....+++.++..   
T Consensus        18 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~---   91 (119)
T TIGR02795        18 YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQ---GKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGD---   91 (119)
T ss_pred             HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCC---
Confidence            477889999999999987   56888888888877   47899999999999999886   4677777777776554   


Q ss_pred             hhHHhHHHHHHHHHHHHHhcCCchh
Q 045108          186 TLQWIIERESELVEKIAERSKMNYR  210 (425)
Q Consensus       186 ~~~~~~~~EL~~~~~~l~~~pkNY~  210 (425)
                           ..+.+.++..+++.+|.+-.
T Consensus        92 -----~~~A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        92 -----KEKAKATLQQVIKRYPGSSA  111 (119)
T ss_pred             -----hHHHHHHHHHHHHHCcCChh
Confidence                 57888999999999998743

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=94.84  E-value=0.12  Score=39.14  Aligned_cols=57  Identities=19%  Similarity=0.076  Sum_probs=51.5

Q ss_pred             cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhh
Q 045108          110 TVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQA  169 (425)
Q Consensus       110 ~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~  169 (425)
                      ...+++++..+.++.++|++..+|..|..++...+   .+.+++..++.++...|+..++
T Consensus         9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~l~~~l~~~p~~~~~   65 (73)
T PF13371_consen    9 EDYEEALEVLERALELDPDDPELWLQRARCLFQLG---RYEEALEDLERALELSPDDPDA   65 (73)
T ss_pred             CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhc---cHHHHHHHHHHHHHHCCCcHHH
Confidence            34578999999999999999999999999999884   8899999999999999988765

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=94.80  E-value=2.6  Score=41.90  Aligned_cols=123  Identities=10%  Similarity=-0.017  Sum_probs=83.7

Q ss_pred             chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccC-CcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHH
Q 045108          111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQ-LLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQW  189 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~-~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~  189 (425)
                      ..+++++....++..+|++..+++. ........ ..................+|....+.....+++...+.       
T Consensus        58 ~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~-------  129 (355)
T cd05804          58 DLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ-------  129 (355)
T ss_pred             CHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC-------
Confidence            3568899999999999999998875 22222111 01122233333333334555555555555566655443       


Q ss_pred             hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC
Q 045108          190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVAD  244 (425)
Q Consensus       190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N  244 (425)
                       +.+....+.++++.+|.+-+++....-++...+.  +++.+..+.+++...+.+
T Consensus       130 -~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~--~~eA~~~l~~~l~~~~~~  181 (355)
T cd05804         130 -YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR--FKEGIAFMESWRDTWDCS  181 (355)
T ss_pred             -HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC--HHHHHHHHHhhhhccCCC
Confidence             6888999999999999998888777777766665  778899999999987754

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=94.80  E-value=0.31  Score=51.42  Aligned_cols=93  Identities=12%  Similarity=0.067  Sum_probs=81.5

Q ss_pred             chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108          111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~  190 (425)
                      ..+.+++.++.+|..||++.++...|..+..++.   .+...|.-+..++..+|.+...|....-++..+..        
T Consensus       373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~---~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~--------  441 (539)
T KOG0548|consen  373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLG---EYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKE--------  441 (539)
T ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh---hHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH--------
Confidence            3466778888899999999999999999999884   78999999999999999999999999888887765        


Q ss_pred             HHHHHHHHHHHHHhcCCchhhhhH
Q 045108          191 IERESELVEKIAERSKMNYRAWNH  214 (425)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~h  214 (425)
                      +.+.++.+..+++.||.|-.+=.+
T Consensus       442 ydkAleay~eale~dp~~~e~~~~  465 (539)
T KOG0548|consen  442 YDKALEAYQEALELDPSNAEAIDG  465 (539)
T ss_pred             HHHHHHHHHHHHhcCchhHHHHHH
Confidence            789999999999999987665443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.72  E-value=1  Score=43.72  Aligned_cols=136  Identities=11%  Similarity=-0.036  Sum_probs=101.6

Q ss_pred             ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH-ccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchh
Q 045108          109 DTVAIEVMIHSKALLLLSCDFATAWNSRKLIVS-NKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTL  187 (425)
Q Consensus       109 ~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~-~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~  187 (425)
                      ....+++++.++.+|.-||-|..+- .||..+. +.+   .-.+.++-+...|..++....+|++-..+......     
T Consensus        99 ~~~~~~A~e~y~~lL~ddpt~~v~~-KRKlAilka~G---K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~-----  169 (289)
T KOG3060|consen   99 TGNYKEAIEYYESLLEDDPTDTVIR-KRKLAILKAQG---KNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGD-----  169 (289)
T ss_pred             hhchhhHHHHHHHHhccCcchhHHH-HHHHHHHHHcC---CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhH-----
Confidence            3567889999999999998876554 4665444 443   33488999999999999999999999888776654     


Q ss_pred             HHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhc-hhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 045108          188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMT-REQVLNELKQSRNWSGLHVADNSCFHYHRRLMI  256 (425)
Q Consensus       188 ~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~-~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~  256 (425)
                         +.+..-+.+.++-..|-|+-...--.=++-..+ .+.++....+..+.++.++.|..+|.-....-.
T Consensus       170 ---f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~  236 (289)
T KOG3060|consen  170 ---FEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGS  236 (289)
T ss_pred             ---HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence               678888889999999999865433233332232 345677789999999999999999876543333

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.62  E-value=5.9  Score=41.62  Aligned_cols=136  Identities=13%  Similarity=0.015  Sum_probs=105.0

Q ss_pred             ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhh
Q 045108          147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ  226 (425)
Q Consensus       147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~  226 (425)
                      ..-+.+..++..+|+.||+...+|.--.-=.-.+.+        -...++...++++.+|+.|.||.--+....-|.-  
T Consensus       344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKN--------t~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~M--  413 (559)
T KOG1155|consen  344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKN--------THAAIESYRRAVDINPRDYRAWYGLGQAYEIMKM--  413 (559)
T ss_pred             HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcc--------cHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcc--
Confidence            446788999999999999999999644332223332        2677888999999999999999988887776654  


Q ss_pred             HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 045108          227 VLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRR  306 (425)
Q Consensus       227 ~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr  306 (425)
                      -.-.|-+..+.+..-|.|.--|.-..-...++                    ...++.+.+.+.+|...--+-++-.+.-
T Consensus       414 h~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl--------------------~~~~eAiKCykrai~~~dte~~~l~~La  473 (559)
T KOG1155|consen  414 HFYALYYFQKALELKPNDSRLWVALGECYEKL--------------------NRLEEAIKCYKRAILLGDTEGSALVRLA  473 (559)
T ss_pred             hHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHhccccchHHHHHHH
Confidence            35678999999999999999998877777664                    1356778888888877766778877776


Q ss_pred             HHHHHH
Q 045108          307 FLSLYL  312 (425)
Q Consensus       307 ~Ll~~~  312 (425)
                      .|...+
T Consensus       474 kLye~l  479 (559)
T KOG1155|consen  474 KLYEEL  479 (559)
T ss_pred             HHHHHH
Confidence            666654

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=94.60  E-value=0.12  Score=38.51  Aligned_cols=53  Identities=17%  Similarity=0.103  Sum_probs=47.3

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCch
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE  167 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy  167 (425)
                      .++++.....++..+|++..+|...+.++...+   .+.+++.....++..+|.++
T Consensus        13 ~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g---~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen   13 YDEAIAAFEQALKQDPDNPEAWYLLGRILYQQG---RYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCcCCC
Confidence            478999999999999999999999999999874   78999999999999999875

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=94.59  E-value=0.52  Score=50.85  Aligned_cols=100  Identities=12%  Similarity=0.009  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHH
Q 045108          113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIE  192 (425)
Q Consensus       113 ~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~  192 (425)
                      ...|++...+|...|+|-...-..+..|..++   .-+++...+...+..++||+-.||--.-+...-        ..+.
T Consensus        24 kkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg---~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d--------K~Y~   92 (700)
T KOG1156|consen   24 KKGLKLIKQILKKFPEHGESLAMKGLTLNCLG---KKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD--------KKYD   92 (700)
T ss_pred             HhHHHHHHHHHHhCCccchhHHhccchhhccc---chHHHHHHHHHHhccCcccchhHHHHHHHHhhh--------hhHH
Confidence            45789999999999999999999998888875   668899999999999999999998666544332        2478


Q ss_pred             HHHHHHHHHHHhcCCchhhhhHHHHHHHhhc
Q 045108          193 RESELVEKIAERSKMNYRAWNHRCWLVSFMT  223 (425)
Q Consensus       193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~  223 (425)
                      +.+.+...|+...|.|-..|.--..+-.+|.
T Consensus        93 eaiKcy~nAl~~~~dN~qilrDlslLQ~QmR  123 (700)
T KOG1156|consen   93 EAIKCYRNALKIEKDNLQILRDLSLLQIQMR  123 (700)
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence            9999999999999999999987766666654

>PRK11906 transcriptional regulator; Provisional

Probab=94.57  E-value=0.83  Score=47.83  Aligned_cols=129  Identities=9%  Similarity=-0.081  Sum_probs=96.2

Q ss_pred             ccchHHHHHHHHHHH---HhCCccHHHHHHHHHHHHcc-----C-CcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHH
Q 045108          109 DTVAIEVMIHSKALL---LLSCDFATAWNSRKLIVSNK-----Q-LLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINM  179 (425)
Q Consensus       109 ~~~~~~~L~~t~~lL---l~npe~~TaWn~Rr~lL~~~-----~-~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~  179 (425)
                      .+....++.+...++   .++|++..++-.+..+-...     . ......+.+++...++..+|.++.+=.....++..
T Consensus       271 ~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~  350 (458)
T PRK11906        271 PESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL  350 (458)
T ss_pred             HHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence            355677888899999   99999988766555433221     1 12346777888899999999998875555544443


Q ss_pred             HhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhH
Q 045108          180 ISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSC  247 (425)
Q Consensus       180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~Sa  247 (425)
                      ...        +...+...++++..+|..-.+|.++.|+...-+.  .++.++.+++.++++|.---+
T Consensus       351 ~~~--------~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~--~~~a~~~i~~alrLsP~~~~~  408 (458)
T PRK11906        351 SGQ--------AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK--IEEARICIDKSLQLEPRRRKA  408 (458)
T ss_pred             hcc--------hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC--HHHHHHHHHHHhccCchhhHH
Confidence            332        5677888999999999999999999999887665  678899999999999865433

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=94.53  E-value=0.89  Score=50.68  Aligned_cols=101  Identities=11%  Similarity=0.031  Sum_probs=84.1

Q ss_pred             ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhh
Q 045108          147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ  226 (425)
Q Consensus       147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~  226 (425)
                      +.++++..++..++..+|+++.+|..-.-|.++.++        .++-+.+-..|+-.+|+++.-|.+-.=+...++.  
T Consensus       153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd--------~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~--  222 (895)
T KOG2076|consen  153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGD--------IEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN--  222 (895)
T ss_pred             CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHccc--------HHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc--
Confidence            478999999999999999999999999999998775        5788888899999999999999987666666654  


Q ss_pred             HHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 045108          227 VLNELKQSRNWSGLHVADNSCFHYHRRLMIW  257 (425)
Q Consensus       227 ~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~  257 (425)
                      +..+.-+..+.|..+|.|.-----|..|+.+
T Consensus       223 i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~  253 (895)
T KOG2076|consen  223 INQARYCYSRAIQANPSNWELIYERSSLYQK  253 (895)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            7899999999999999995433334444444

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=94.50  E-value=0.65  Score=51.01  Aligned_cols=122  Identities=11%  Similarity=0.019  Sum_probs=92.7

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .+++.-+...+=.+.|....+|+.|++++...   ....++...+..+|..+|....+=.--.-++.+.+..      -+
T Consensus       666 ~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~---~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~------~l  736 (799)
T KOG4162|consen  666 DDEARSCLLEASKIDPLSASVYYLRGLLLEVK---GQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSP------RL  736 (799)
T ss_pred             chHHHHHHHHHHhcchhhHHHHHHhhHHHHHH---HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCc------ch
Confidence            35555566666677777777888887777665   3678889999999999999998888888888777642      13


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVAD  244 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N  244 (425)
                      ...-.+.+.+++.||.|-.||.+-+-++...+.  .....+.....+..+.+|
T Consensus       737 a~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd--~~~Aaecf~aa~qLe~S~  787 (799)
T KOG4162|consen  737 AEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD--SKQAAECFQAALQLEESN  787 (799)
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc--hHHHHHHHHHHHhhccCC
Confidence            444458888999999999999999999988876  556677777777666654

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=94.43  E-value=0.94  Score=40.84  Aligned_cols=99  Identities=12%  Similarity=-0.025  Sum_probs=84.3

Q ss_pred             ceEeecccccc----h-hhhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCccHHHHHHHH
Q 045108           63 SFWIRDHKLGI----S-TQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRK  137 (425)
Q Consensus        63 p~~~~~~~lgi----~-~~~l~~ly~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~npe~~TaWn~Rr  137 (425)
                      .|+..|.+|++    + ...+-.+|..|...+..                  ..-+++...+..+..++|.+...|.--+
T Consensus        15 ~f~~~Ggsl~~l~~~~~~~~l~~lY~~A~~ly~~------------------G~l~~A~~~f~~L~~~Dp~~~~y~~gLG   76 (157)
T PRK15363         15 RFFRRGGSLRMLLDDDVTQPLNTLYRYAMQLMEV------------------KEFAGAARLFQLLTIYDAWSFDYWFRLG   76 (157)
T ss_pred             HHHHcCCcHHHHHCCChHHHHHHHHHHHHHHHHC------------------CCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            47788888765    4 56677899999655322                  2347899999999999999999999999


Q ss_pred             HHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhh
Q 045108          138 LIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISR  182 (425)
Q Consensus       138 ~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~  182 (425)
                      .+.+..+   .+.+++.....++..+|++|..-.|-..++..+++
T Consensus        77 ~~~Q~~g---~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~  118 (157)
T PRK15363         77 ECCQAQK---HWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDN  118 (157)
T ss_pred             HHHHHHh---hHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC
Confidence            9999884   89999999999999999999999999999998876

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=94.22  E-value=1.6  Score=35.57  Aligned_cols=90  Identities=8%  Similarity=-0.074  Sum_probs=69.8

Q ss_pred             ccHHHHHHHHHHHHhhCCCc---hhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCc---hhhhhHHHHHHH
Q 045108          147 PILMDELRLSAVVLSHSPKS---EQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN---YRAWNHRCWLVS  220 (425)
Q Consensus       147 ~~l~~EL~~~~~lL~~~PKs---y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN---Y~AW~hR~wll~  220 (425)
                      ..+.+++..+..++..+|++   .+++.....++...+.        +...+..+..++..+|.+   -.+|....++..
T Consensus        16 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~   87 (119)
T TIGR02795        16 GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGK--------YADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ   87 (119)
T ss_pred             CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhcc--------HHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence            47899999999999999987   3555555555555443        688999999999999986   356777778877


Q ss_pred             hhchhhHHHHHHHHHHHHhhcCCChh
Q 045108          221 FMTREQVLNELKQSRNWSGLHVADNS  246 (425)
Q Consensus       221 ~~~~~~~~~EL~~~~~~i~~d~~N~S  246 (425)
                      .++.  ....+..+.+.+..+|.+--
T Consensus        88 ~~~~--~~~A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        88 ELGD--KEKAKATLQQVIKRYPGSSA  111 (119)
T ss_pred             HhCC--hHHHHHHHHHHHHHCcCChh
Confidence            7665  67888999999999887643

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=94.12  E-value=1.2  Score=40.10  Aligned_cols=128  Identities=10%  Similarity=-0.033  Sum_probs=85.4

Q ss_pred             HHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCc---hhhhhHHHHHHHhhchhhHHHHHHH
Q 045108          157 AVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN---YRAWNHRCWLVSFMTREQVLNELKQ  233 (425)
Q Consensus       157 ~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN---Y~AW~hR~wll~~~~~~~~~~EL~~  233 (425)
                      ..++..+++...++.+..........      ..+++.+.++.++++..|..   ..+|...+.+...++.  ++..+..
T Consensus        23 ~~~~~~~~~~~~a~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~   94 (172)
T PRK02603         23 LKILPINKKAKEAFVYYRDGMSAQAD------GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE--HDKALEY   94 (172)
T ss_pred             HHHcccccHhhhHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC--HHHHHHH
Confidence            44455555555555444433332221      12688899999999887653   4577777777777665  7888999


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCC
Q 045108          234 SRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGR  298 (425)
Q Consensus       234 ~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~n  298 (425)
                      +.+.+..+|.+..++..+..+...+... ..     ..+........+.+.+++.++.+..+|.|
T Consensus        95 ~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~-----a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603         95 YHQALELNPKQPSALNNIAVIYHKRGEK-AE-----EAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHcCCh-Hh-----HhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            9999999999999988887776553110 00     00112334456778888999999999998

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=94.08  E-value=2.5  Score=44.41  Aligned_cols=119  Identities=8%  Similarity=-0.089  Sum_probs=99.5

Q ss_pred             CccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcC
Q 045108          127 CDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK  206 (425)
Q Consensus       127 pe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p  206 (425)
                      |.-..+|.-+..--...   ..+.+.+..+..++...|+|+..|..+..+.....+        ..+..+...+++..+|
T Consensus       303 ~~~~aa~YG~A~~~~~~---~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk--------~~~A~e~~~kal~l~P  371 (484)
T COG4783         303 RGGLAAQYGRALQTYLA---GQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK--------AKEAIERLKKALALDP  371 (484)
T ss_pred             ccchHHHHHHHHHHHHh---cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHhcCC
Confidence            66667776665433333   467899999999999999999999999999887765        5788999999999999


Q ss_pred             CchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108          207 MNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWN  258 (425)
Q Consensus       207 kNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l  258 (425)
                      -++..|--..-.+-..+.+  .+.+...+..+..+|.|--+|.|.......+
T Consensus       372 ~~~~l~~~~a~all~~g~~--~eai~~L~~~~~~~p~dp~~w~~LAqay~~~  421 (484)
T COG4783         372 NSPLLQLNLAQALLKGGKP--QEAIRILNRYLFNDPEDPNGWDLLAQAYAEL  421 (484)
T ss_pred             CccHHHHHHHHHHHhcCCh--HHHHHHHHHHhhcCCCCchHHHHHHHHHHHh
Confidence            9999998888888777764  5889999999999999999999988776653

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=93.83  E-value=0.27  Score=51.26  Aligned_cols=74  Identities=11%  Similarity=0.117  Sum_probs=65.1

Q ss_pred             hCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhh---hhHHHHHHHHHhhccchhHHhHHHHHHHHHHH
Q 045108          125 LSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQA---WSHRRWVINMISRNCSTLQWIIERESELVEKI  201 (425)
Q Consensus       125 ~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~---W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~  201 (425)
                      .+|+++.+|+.+...+...   ..+++++..++.+|..+|.+..+   |+++..++.+++.        +++.++.+.++
T Consensus        70 ~dP~~a~a~~NLG~AL~~l---GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr--------~dEAla~LrrA  138 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSK---GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREE--------GKKAADCLRTA  138 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHH
Confidence            6999999999999999888   48999999999999999999955   9999999998876        68889999999


Q ss_pred             HHhcCCch
Q 045108          202 AERSKMNY  209 (425)
Q Consensus       202 l~~~pkNY  209 (425)
                      ++.++..|
T Consensus       139 Lelsn~~f  146 (453)
T PLN03098        139 LRDYNLKF  146 (453)
T ss_pred             HHhcchhH
Confidence            99854444

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.70  E-value=6.3  Score=42.26  Aligned_cols=99  Identities=11%  Similarity=0.030  Sum_probs=59.2

Q ss_pred             hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCC
Q 045108          190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNN  269 (425)
Q Consensus       190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~  269 (425)
                      -+++...+.+.+|..+|.||..|+--+-.+..-.  ...+.++.+.+.+.+-|.=.-+|.....-.-.+           
T Consensus       445 efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~--~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl-----------  511 (579)
T KOG1125|consen  445 EFDRAVDCFEAALQVKPNDYLLWNRLGATLANGN--RSEEAISAYNRALQLQPGYVRVRYNLGISCMNL-----------  511 (579)
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCc--ccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh-----------
Confidence            3555666666777777777777765554443322  245666666666666666555555544332221           


Q ss_pred             CCCchhhhhHHHHHHHHHHHHHHhhcCC----------CccHHHHHHHHHH
Q 045108          270 SSGYFVETYQVWKEELDWNESLIKRYVG----------REALWLHRRFLSL  310 (425)
Q Consensus       270 ~~~~~~~~~~~~~~EL~~~~~~I~~~p~----------neSaW~yrr~Ll~  310 (425)
                               ..+++.+.+.-.+|.+.+.          ++.+|-++|..+.
T Consensus       512 ---------G~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als  553 (579)
T KOG1125|consen  512 ---------GAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALS  553 (579)
T ss_pred             ---------hhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHH
Confidence                     2466777777777766554          3469999995443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=93.68  E-value=4.9  Score=42.20  Aligned_cols=134  Identities=13%  Similarity=0.052  Sum_probs=109.5

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .+.++.....+|.+||....||---+.=...+   ..-..++.....++..||..|-+|.--.....-+.        ..
T Consensus       346 HEKAv~YFkRALkLNp~~~~aWTLmGHEyvEm---KNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~--------Mh  414 (559)
T KOG1155|consen  346 HEKAVMYFKRALKLNPKYLSAWTLMGHEYVEM---KNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMK--------MH  414 (559)
T ss_pred             HHHHHHHHHHHHhcCcchhHHHHHhhHHHHHh---cccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc--------ch
Confidence            46788899999999999999998777544344   35578899999999999999999988766655443        24


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWN  258 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l  258 (425)
                      .-.|-+..++++.-|..-..|.--+-+...++.  .++.+...++.+...-.|-+|..+...+-.++
T Consensus       415 ~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~--~~eAiKCykrai~~~dte~~~l~~LakLye~l  479 (559)
T KOG1155|consen  415 FYALYYFQKALELKPNDSRLWVALGECYEKLNR--LEEAIKCYKRAILLGDTEGSALVRLAKLYEEL  479 (559)
T ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcc--HHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            678889999999999888888877777777765  68889999999998888889988888777765

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.62  E-value=0.53  Score=50.09  Aligned_cols=87  Identities=8%  Similarity=-0.038  Sum_probs=73.5

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++++++.+.+|..+|.+|+.||--+..|-+..   ...+++.-...+|...|-..-+|..-...--.++.        +
T Consensus       446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~---~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~--------y  514 (579)
T KOG1125|consen  446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGN---RSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA--------Y  514 (579)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCc---ccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh--------H
Confidence            477899999999999999999999999888773   56899999999999999999999887765555543        7


Q ss_pred             HHHHHHHHHHHHhcCCch
Q 045108          192 ERESELVEKIAERSKMNY  209 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY  209 (425)
                      .+..+.+-.+|...++++
T Consensus       515 kEA~~hlL~AL~mq~ks~  532 (579)
T KOG1125|consen  515 KEAVKHLLEALSMQRKSR  532 (579)
T ss_pred             HHHHHHHHHHHHhhhccc
Confidence            888888888888888844

>PRK11906 transcriptional regulator; Provisional

Probab=93.57  E-value=3.4  Score=43.35  Aligned_cols=154  Identities=7%  Similarity=-0.053  Sum_probs=114.8

Q ss_pred             HhCCccH---HHH----HHHHHHHHccCCcccHHHHHHHHHHHH---hhCCCchhhhhHHHHHHHHHhh-ccchhHHhHH
Q 045108          124 LLSCDFA---TAW----NSRKLIVSNKQLLPILMDELRLSAVVL---SHSPKSEQAWSHRRWVINMISR-NCSTLQWIIE  192 (425)
Q Consensus       124 l~npe~~---TaW----n~Rr~lL~~~~~~~~l~~EL~~~~~lL---~~~PKsy~~W~hRrwll~~l~~-~~~~~~~~~~  192 (425)
                      ..-|++.   .+|    ..|++-............++.++..++   ..+|.+..++..+-|+-....- ...+......
T Consensus       242 r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~  321 (458)
T PRK11906        242 RLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQ  321 (458)
T ss_pred             cCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence            3347788   888    334432222111356788999999999   8999999999999888765522 1122445578


Q ss_pred             HHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCC
Q 045108          193 RESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSG  272 (425)
Q Consensus       193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~  272 (425)
                      +.+++..++.+.+|.|-.|=...+.++-..+.  ....+...++.+..+|+.-.+|.|+.++..-. +            
T Consensus       322 ~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~--~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~-G------------  386 (458)
T PRK11906        322 KALELLDYVSDITTVDGKILAIMGLITGLSGQ--AKVSHILFEQAKIHSTDIASLYYYRALVHFHN-E------------  386 (458)
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc--hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHc-C------------
Confidence            88899999999999999887777776665554  67788999999999999999999999887542 2            


Q ss_pred             chhhhhHHHHHHHHHHHHHHhhcCCCc
Q 045108          273 YFVETYQVWKEELDWNESLIKRYVGRE  299 (425)
Q Consensus       273 ~~~~~~~~~~~EL~~~~~~I~~~p~ne  299 (425)
                             -.++.++.+.+.++++|..-
T Consensus       387 -------~~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        387 -------KIEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             -------CHHHHHHHHHHHhccCchhh
Confidence                   15677888889999998743

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=93.47  E-value=0.74  Score=49.71  Aligned_cols=102  Identities=16%  Similarity=0.109  Sum_probs=88.1

Q ss_pred             ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhh
Q 045108          147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ  226 (425)
Q Consensus       147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~  226 (425)
                      ..+..-|.++..+|+++|+....-.-..-.|..++.        -++....|...+..|++++-+|+--+-+.+.-  ..
T Consensus        21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~--------~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d--K~   90 (700)
T KOG1156|consen   21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGK--------KEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD--KK   90 (700)
T ss_pred             HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccc--------hHHHHHHHHHHhccCcccchhHHHHHHHHhhh--hh
Confidence            468999999999999999999998888888877766        37888999999999999999998766665543  34


Q ss_pred             HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108          227 VLNELKQSRNWSGLHVADNSCFHYHRRLMIWN  258 (425)
Q Consensus       227 ~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l  258 (425)
                      +.+.+.....++..++.|-+-|.-...|-..|
T Consensus        91 Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Qm  122 (700)
T KOG1156|consen   91 YDEAIKCYRNALKIEKDNLQILRDLSLLQIQM  122 (700)
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            88999999999999999999999988776665

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=93.44  E-value=0.45  Score=35.99  Aligned_cols=57  Identities=18%  Similarity=0.127  Sum_probs=51.3

Q ss_pred             hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHH
Q 045108          190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCF  248 (425)
Q Consensus       190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW  248 (425)
                      .++..+++++.+++.+|.+..+|..++.+...++.  +...++.++++++.+|.+..+=
T Consensus        10 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~--~~~A~~~l~~~l~~~p~~~~~~   66 (73)
T PF13371_consen   10 DYEEALEVLERALELDPDDPELWLQRARCLFQLGR--YEEALEDLERALELSPDDPDAR   66 (73)
T ss_pred             CHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhcc--HHHHHHHHHHHHHHCCCcHHHH
Confidence            47899999999999999999999999999998886  7899999999999999776553

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=93.44  E-value=4.3  Score=43.61  Aligned_cols=154  Identities=8%  Similarity=-0.083  Sum_probs=96.9

Q ss_pred             HhCCccHHHHHH--HHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHH
Q 045108          124 LLSCDFATAWNS--RKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKI  201 (425)
Q Consensus       124 l~npe~~TaWn~--Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~  201 (425)
                      ..-|.+.+||..  |.+-.............+.+++.++..+|.+..+|..+-++..............+..-.+...++
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            345677788864  443222221234578999999999999999999999887655433222211112233444444554


Q ss_pred             HHh--cCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhH
Q 045108          202 AER--SKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQ  279 (425)
Q Consensus       202 l~~--~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~  279 (425)
                      +..  +|..-  ..|...-+..+....+++.....++.+.++|+ .-+|.++..+.... +                   
T Consensus       411 ~al~~~~~~~--~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~-G-------------------  467 (517)
T PRK10153        411 VALPELNVLP--RIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELK-G-------------------  467 (517)
T ss_pred             hhcccCcCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHc-C-------------------
Confidence            443  45443  34444444433334588999999999999984 45666665554431 1                   


Q ss_pred             HHHHHHHHHHHHHhhcCCCcc
Q 045108          280 VWKEELDWNESLIKRYVGREA  300 (425)
Q Consensus       280 ~~~~EL~~~~~~I~~~p~neS  300 (425)
                      ..++.++...+++.++|+++.
T Consensus       468 ~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        468 DNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             CHHHHHHHHHHHHhcCCCCch
Confidence            256778899999999999985

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.64  E-value=1.2  Score=41.98  Aligned_cols=91  Identities=13%  Similarity=0.041  Sum_probs=73.3

Q ss_pred             ccHHHHHHHHHHHHhhCCCchh-----hhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHh
Q 045108          147 PILMDELRLSAVVLSHSPKSEQ-----AWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSF  221 (425)
Q Consensus       147 ~~l~~EL~~~~~lL~~~PKsy~-----~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~  221 (425)
                      .+++++..-...+|...|..++     ++..|.-++-++.        -++..+.-|.++++.+|.+-.|---|..+..+
T Consensus       109 gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~--------k~e~aI~dcsKaiel~pty~kAl~RRAeayek  180 (271)
T KOG4234|consen  109 GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLR--------KWESAIEDCSKAIELNPTYEKALERRAEAYEK  180 (271)
T ss_pred             ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhh--------hHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence            4688889999999999998886     2333333333333        37889999999999999999999988999988


Q ss_pred             hchhhHHHHHHHHHHHHhhcCCChhH
Q 045108          222 MTREQVLNELKQSRNWSGLHVADNSC  247 (425)
Q Consensus       222 ~~~~~~~~EL~~~~~~i~~d~~N~Sa  247 (425)
                      +..  +++.|+.+++.++.||++.-+
T Consensus       181 ~ek--~eealeDyKki~E~dPs~~ea  204 (271)
T KOG4234|consen  181 MEK--YEEALEDYKKILESDPSRREA  204 (271)
T ss_pred             hhh--HHHHHHHHHHHHHhCcchHHH
Confidence            854  789999999999999998743

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=92.62  E-value=3  Score=37.19  Aligned_cols=105  Identities=8%  Similarity=-0.034  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCch---hhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcC
Q 045108          130 ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE---QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK  206 (425)
Q Consensus       130 ~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy---~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p  206 (425)
                      ..+|+....+....   ..+++++..+..++...|+++   .+|.....+....+.        .++.+.++.+++..+|
T Consensus        35 a~~~~~~g~~~~~~---g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~--------~~eA~~~~~~Al~~~~  103 (168)
T CHL00033         35 AFTYYRDGMSAQSE---GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE--------HTKALEYYFQALERNP  103 (168)
T ss_pred             HHHHHHHHHHHHHc---CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCc
Confidence            45555556656555   368888999999988877644   366666666666544        5788889999999999


Q ss_pred             CchhhhhHHHHHHHhhchh------------hHHHHHHHHHHHHhhcCCCh
Q 045108          207 MNYRAWNHRCWLVSFMTRE------------QVLNELKQSRNWSGLHVADN  245 (425)
Q Consensus       207 kNY~AW~hR~wll~~~~~~------------~~~~EL~~~~~~i~~d~~N~  245 (425)
                      .+-.+|.....+....+..            .+.+.+....+.+..+|.++
T Consensus       104 ~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        104 FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            9998888888888744421            12233455555555555544

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=92.35  E-value=1.8  Score=38.62  Aligned_cols=97  Identities=13%  Similarity=0.032  Sum_probs=74.9

Q ss_pred             chHHHHHHHHHHHHhCCccH---HHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhc----
Q 045108          111 VAIEVMIHSKALLLLSCDFA---TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRN----  183 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~~---TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~----  183 (425)
                      ..++++.....++.+.|++.   ++|.....+....   ...++++..+..++..+|.....|.....+...+...    
T Consensus        50 ~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~---g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~  126 (168)
T CHL00033         50 EYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN---GEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQ  126 (168)
T ss_pred             CHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHc
Confidence            35788999999998877743   5788888887777   4789999999999999999999999998888755421    


Q ss_pred             c--chhHHhHHHHHHHHHHHHHhcCCchh
Q 045108          184 C--STLQWIIERESELVEKIAERSKMNYR  210 (425)
Q Consensus       184 ~--~~~~~~~~~EL~~~~~~l~~~pkNY~  210 (425)
                      +  ......+.+.+.+..++++.+|.|+-
T Consensus       127 g~~~~A~~~~~~a~~~~~~a~~~~p~~~~  155 (168)
T CHL00033        127 GDSEIAEAWFDQAAEYWKQAIALAPGNYI  155 (168)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence            1  11223466777888899999998773

>TIGR00540 hemY_coli hemY protein

Probab=92.26  E-value=7.7  Score=40.05  Aligned_cols=169  Identities=7%  Similarity=-0.182  Sum_probs=107.2

Q ss_pred             chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhC---CCch-----hhhhHHH--------
Q 045108          111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHS---PKSE-----QAWSHRR--------  174 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~---PKsy-----~~W~hRr--------  174 (425)
                      ..+.++...+.++..+|+|..+...-..+....   .++++.+..+..++...   |..+     .+|..+-        
T Consensus       168 ~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~---~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~  244 (409)
T TIGR00540       168 ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS---GAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG  244 (409)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            356788899999999999999988877777665   36777777777777543   3333     2232211        


Q ss_pred             -HHHHHHhhccc-----h------------hHHhHHHHHHHHHHHHHhcCCchhhh--hHHHHHHHhhchhhHHHHHHHH
Q 045108          175 -WVINMISRNCS-----T------------LQWIIERESELVEKIAERSKMNYRAW--NHRCWLVSFMTREQVLNELKQS  234 (425)
Q Consensus       175 -wll~~l~~~~~-----~------------~~~~~~~EL~~~~~~l~~~pkNY~AW--~hR~wll~~~~~~~~~~EL~~~  234 (425)
                       -.+.......+     +            .....+..++.+.++++.+|.|....  ..+....  +...+...-++.+
T Consensus       245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~--l~~~~~~~~~~~~  322 (409)
T TIGR00540       245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPR--LKPEDNEKLEKLI  322 (409)
T ss_pred             HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhh--cCCCChHHHHHHH
Confidence             01111111010     0            01335788899999999999886542  2222221  2222345678899


Q ss_pred             HHHHhhcCCCh--hHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHH--HHHhhcCCCccHHHH
Q 045108          235 RNWSGLHVADN--SCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNE--SLIKRYVGREALWLH  304 (425)
Q Consensus       235 ~~~i~~d~~N~--SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~--~~I~~~p~neSaW~y  304 (425)
                      ++|++.+|.|.  .......++..+. +                   .+.+..++.+  ..+..+|+++...+.
T Consensus       323 e~~lk~~p~~~~~~ll~sLg~l~~~~-~-------------------~~~~A~~~le~a~a~~~~p~~~~~~~L  376 (409)
T TIGR00540       323 EKQAKNVDDKPKCCINRALGQLLMKH-G-------------------EFIEAADAFKNVAACKEQLDANDLAMA  376 (409)
T ss_pred             HHHHHhCCCChhHHHHHHHHHHHHHc-c-------------------cHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence            99999999999  6666666666542 1                   2667777777  577789999886633

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.22  E-value=12  Score=36.49  Aligned_cols=139  Identities=10%  Similarity=0.052  Sum_probs=93.2

Q ss_pred             ccchHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccc
Q 045108          109 DTVAIEVMIHSKALLLLSCDF---ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCS  185 (425)
Q Consensus       109 ~~~~~~~L~~t~~lLl~npe~---~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~  185 (425)
                      ...++++++.-..++...+.-   -..|-.--.+.-+..+.....-+..+++.+-.+.|+|+-+=--..-.++..+    
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~----  100 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATG----  100 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhh----
Confidence            345688888888777665554   1345544333322211234466777888888889999766554444444433    


Q ss_pred             hhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 045108          186 TLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIW  257 (425)
Q Consensus       186 ~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~  257 (425)
                          .+.+.+++.+..++.||-|.-.---+--++..++..  .+.++-+.+.++.=+.|.-||++..-+...
T Consensus       101 ----~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~--l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~  166 (289)
T KOG3060|consen  101 ----NYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKN--LEAIKELNEYLDKFMNDQEAWHELAEIYLS  166 (289)
T ss_pred             ----chhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence                378999999999999999887755444444555542  366777788888889999999998877655

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=92.22  E-value=2.2  Score=48.51  Aligned_cols=131  Identities=6%  Similarity=-0.220  Sum_probs=97.3

Q ss_pred             HHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccch----------hHHhH
Q 045108          122 LLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCST----------LQWII  191 (425)
Q Consensus       122 lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~----------~~~~~  191 (425)
                      +...+|.+..||-.=-......   ..+++.+..++..+..+|+...+|.+-..+..+.......          ....+
T Consensus        23 ~~~~~p~n~~a~~~Li~~~~~~---~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~   99 (906)
T PRK14720         23 ANNYSLSKFKELDDLIDAYKSE---NLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW   99 (906)
T ss_pred             cccCCcchHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch
Confidence            3457788888885443333223   5789999999999999999999999999976654432210          01112


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWN  258 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l  258 (425)
                       .-.+.+..++..++.|-+|-....-+...++.  ..+..+..++.++.||.|..+-++..+.+...
T Consensus       100 -~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~--~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~  163 (906)
T PRK14720        100 -AIVEHICDKILLYGENKLALRTLAEAYAKLNE--NKKLKGVWERLVKADRDNPEIVKKLATSYEEE  163 (906)
T ss_pred             -hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence             34455555666688888888888899988886  67889999999999999999999999887653

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=91.92  E-value=4.1  Score=39.79  Aligned_cols=89  Identities=12%  Similarity=0.015  Sum_probs=72.3

Q ss_pred             hHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCC---chhhhhHHHHHHHHHhhccc
Q 045108          112 AIEVMIHSKALLLLSCDF---ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPK---SEQAWSHRRWVINMISRNCS  185 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~---~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PK---sy~~W~hRrwll~~l~~~~~  185 (425)
                      .++++.....++...|+.   ..|+.+.+.+....   ..+++++..+..++..+|+   .+.+|.....+...++.   
T Consensus       159 y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~---g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~---  232 (263)
T PRK10803        159 QDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNK---GKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD---  232 (263)
T ss_pred             HHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC---
Confidence            368899999999999998   47888888888777   4789999999999987776   46677666666665543   


Q ss_pred             hhHHhHHHHHHHHHHHHHhcCCchhh
Q 045108          186 TLQWIIERESELVEKIAERSKMNYRA  211 (425)
Q Consensus       186 ~~~~~~~~EL~~~~~~l~~~pkNY~A  211 (425)
                           ......++.++++.+|.+-.|
T Consensus       233 -----~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        233 -----TAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             -----HHHHHHHHHHHHHHCcCCHHH
Confidence                 578889999999999988765

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=91.91  E-value=5.8  Score=42.64  Aligned_cols=125  Identities=8%  Similarity=-0.072  Sum_probs=86.6

Q ss_pred             chHHHHHHHHHHHHhCCccHHHHHHHHHHHHcc--CC---cccHHHHHHHHHHHHhh--CCCchhhhhHHHHHHHHHhhc
Q 045108          111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNK--QL---LPILMDELRLSAVVLSH--SPKSEQAWSHRRWVINMISRN  183 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~--~~---~~~l~~EL~~~~~lL~~--~PKsy~~W~hRrwll~~l~~~  183 (425)
                      ....++.+.+.++.++|++..||-.+..+....  ..   ...+.........++..  .|-.+  ..|.-..+..+.. 
T Consensus       357 ~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~--~~~~ala~~~~~~-  433 (517)
T PRK10153        357 SLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLP--RIYEILAVQALVK-  433 (517)
T ss_pred             HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCCh--HHHHHHHHHHHhc-
Confidence            356788999999999999999888764422111  10   01123334444444443  44444  3455444444433 


Q ss_pred             cchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChh
Q 045108          184 CSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNS  246 (425)
Q Consensus       184 ~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~S  246 (425)
                           ..+++.....+++++.+| |..+|...+.+....+.  .++.++.+.+.+.++|.+..
T Consensus       434 -----g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~--~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        434 -----GKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGD--NRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             -----CCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCch
Confidence                 236889999999999999 67899999999888776  67889999999999999884

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=91.88  E-value=13  Score=40.83  Aligned_cols=172  Identities=12%  Similarity=0.037  Sum_probs=112.9

Q ss_pred             chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccC-------------------------------CcccHHHHHHHHHHH
Q 045108          111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQ-------------------------------LLPILMDELRLSAVV  159 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~-------------------------------~~~~l~~EL~~~~~l  159 (425)
                      -.++++++.+.+|..-|++.-.|-..+++.....                               ....+.++-..++..
T Consensus       666 ~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildra  745 (913)
T KOG0495|consen  666 NVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRA  745 (913)
T ss_pred             hHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            4688999999999999999999999999887653                               012345555666666


Q ss_pred             HhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhch---------------
Q 045108          160 LSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR---------------  224 (425)
Q Consensus       160 L~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~---------------  224 (425)
                      ..+|||+.-+|-----+=.+.+.        .+..-.++.++|+..|+|--.|.-..|+-.+-..               
T Consensus       746 rlkNPk~~~lwle~Ir~ElR~gn--------~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dp  817 (913)
T KOG0495|consen  746 RLKNPKNALLWLESIRMELRAGN--------KEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDP  817 (913)
T ss_pred             HhcCCCcchhHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCc
Confidence            67777777777543222222222        2334457889999999999999999998654321               


Q ss_pred             -------------hhHHHHHHHHHHHHhhcCCChhHHHH--HHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHH
Q 045108          225 -------------EQVLNELKQSRNWSGLHVADNSCFHY--HRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNE  289 (425)
Q Consensus       225 -------------~~~~~EL~~~~~~i~~d~~N~SaW~y--R~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~  289 (425)
                                   ..++...+...+.++.||+|-.+|.+  +..+...-               .       ++--+...
T Consensus       818 hVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~---------------e-------ed~kev~~  875 (913)
T KOG0495|consen  818 HVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGT---------------E-------EDQKEVLK  875 (913)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCC---------------H-------HHHHHHHH
Confidence                         12345577777888888887766554  44333211               0       11122234


Q ss_pred             HHHhhcCCCccHHHHHHHHHHHH
Q 045108          290 SLIKRYVGREALWLHRRFLSLYL  312 (425)
Q Consensus       290 ~~I~~~p~neSaW~yrr~Ll~~~  312 (425)
                      +.....|.|--.|.--+.-+..+
T Consensus       876 ~c~~~EP~hG~~W~avSK~i~n~  898 (913)
T KOG0495|consen  876 KCETAEPTHGELWQAVSKDIKNW  898 (913)
T ss_pred             HHhccCCCCCcHHHHHhhhHHhc
Confidence            45556999999998866655543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=91.83  E-value=0.7  Score=34.37  Aligned_cols=58  Identities=12%  Similarity=-0.067  Sum_probs=51.0

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSH  172 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~h  172 (425)
                      .+++++....++..+|++..++.....++...+   .++++...+..++..+|+++.+|.-
T Consensus         7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~l~~~~~~~~~~~~~~~l   64 (68)
T PF14559_consen    7 YDEAIELLEKALQRNPDNPEARLLLAQCYLKQG---QYDEAEELLERLLKQDPDNPEYQQL   64 (68)
T ss_dssp             HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT----HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            477999999999999999999999999888874   7899999999999999998777643

...

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=91.77  E-value=1.1  Score=49.16  Aligned_cols=88  Identities=16%  Similarity=0.123  Sum_probs=73.9

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      -.++.++...+|.+||+|..+-..-.+++...+ ...+.+.-.++..+++.+|.|..+|.+-..++++.+.        .
T Consensus       700 ~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G-~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd--------~  770 (799)
T KOG4162|consen  700 LEEAKEAFLVALALDPDHVPSMTALAELLLELG-SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD--------S  770 (799)
T ss_pred             hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc--------h
Confidence            367899999999999999999999999888876 3456666679999999999999999999999999876        3


Q ss_pred             HHHHHHHHHHHHhcCCc
Q 045108          192 ERESELVEKIAERSKMN  208 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkN  208 (425)
                      ...-++...+++..+.|
T Consensus       771 ~~Aaecf~aa~qLe~S~  787 (799)
T KOG4162|consen  771 KQAAECFQAALQLEESN  787 (799)
T ss_pred             HHHHHHHHHHHhhccCC
Confidence            56667777777776654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=91.36  E-value=0.79  Score=47.92  Aligned_cols=70  Identities=9%  Similarity=-0.061  Sum_probs=62.3

Q ss_pred             hCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCch---hhhhHHHHHHHhhchhhHHHHHHHHHHHH
Q 045108          162 HSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNY---RAWNHRCWLVSFMTREQVLNELKQSRNWS  238 (425)
Q Consensus       162 ~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY---~AW~hR~wll~~~~~~~~~~EL~~~~~~i  238 (425)
                      .+|+.+.+|+.+..++.+++.        +++.+..++++++.+|.+.   .+|+++..++..++.  .++.++.+.+.+
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGr--------yeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr--~dEAla~LrrAL  139 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGR--------VKDALAQFETALELNPNPDEAQAAYYNKACCHAYREE--GKKAADCLRTAL  139 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHH
Confidence            689999999999999988765        7999999999999999998   459999999999886  678889999988


Q ss_pred             hhc
Q 045108          239 GLH  241 (425)
Q Consensus       239 ~~d  241 (425)
                      +..
T Consensus       140 els  142 (453)
T PLN03098        140 RDY  142 (453)
T ss_pred             Hhc
Confidence            873

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=90.52  E-value=7.6  Score=35.04  Aligned_cols=102  Identities=9%  Similarity=-0.105  Sum_probs=78.4

Q ss_pred             CccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcC
Q 045108          127 CDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK  206 (425)
Q Consensus       127 pe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p  206 (425)
                      ++....-.-..-.+...   ..++++..++..+...+|.++.-|..-.-+.+.++.        +.+.+....+++..+|
T Consensus        32 ~~~l~~lY~~A~~ly~~---G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~--------~~~AI~aY~~A~~L~~  100 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEV---KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKH--------WGEAIYAYGRAAQIKI  100 (157)
T ss_pred             HHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHhcCC
Confidence            44444444444444444   479999999999999999999999999999888775        7999999999999999


Q ss_pred             CchhhhhHHHHHHHhhchh-hHHHHHHHHHHHHh
Q 045108          207 MNYRAWNHRCWLVSFMTRE-QVLNELKQSRNWSG  239 (425)
Q Consensus       207 kNY~AW~hR~wll~~~~~~-~~~~EL~~~~~~i~  239 (425)
                      .++.+-.|.+-+.-.++.. .-..-+..+-.|+.
T Consensus       101 ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        101 DAPQAPWAAAECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence            9999999999998877752 12233444555553

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=90.12  E-value=40  Score=38.59  Aligned_cols=200  Identities=10%  Similarity=-0.097  Sum_probs=108.8

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhc--cc-hhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRN--CS-TLQ  188 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~--~~-~~~  188 (425)
                      ..++......+|.+|..+.+||.+-+.+-.+.......++-.....+-...+|+.|.+=.-=-..++.+...  .+ .-.
T Consensus       546 ~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~k  625 (1018)
T KOG2002|consen  546 LYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEK  625 (1018)
T ss_pred             cHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHH
Confidence            466778888888888888888888875444332011111212222222223366665443222333333221  12 223


Q ss_pred             HhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhcccccc---
Q 045108          189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHI---  265 (425)
Q Consensus       189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~---  265 (425)
                      ....+.+++..++|..||||-||=+--+-|+..-+.  +...++...+..+.-..+..+|-....++.....-+.+.   
T Consensus       626 k~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~--~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmY  703 (1018)
T KOG2002|consen  626 KHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGR--FSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMY  703 (1018)
T ss_pred             HHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccC--chHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999998888888866443  333333333333333334444544444432210000000   


Q ss_pred             --------CCCCCC-----CchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 045108          266 --------QDNNSS-----GYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLYLI  313 (425)
Q Consensus       266 --------~~~~~~-----~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~~~  313 (425)
                              ..+.+.     ++.--....+.+..++...++...|+|.++=+.+-.++..+.
T Consensus       704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla  764 (1018)
T KOG2002|consen  704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLA  764 (1018)
T ss_pred             HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHH
Confidence                    000000     000001134677888889999999999999888877776644

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=89.31  E-value=1.5  Score=32.54  Aligned_cols=58  Identities=14%  Similarity=0.092  Sum_probs=49.7

Q ss_pred             ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhh
Q 045108          147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAW  212 (425)
Q Consensus       147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW  212 (425)
                      +.+.+++.++..++..+|++..++.....++.+.+.        +++...++.+++..+|.|-.+|
T Consensus         5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--------~~~A~~~l~~~~~~~~~~~~~~   62 (68)
T PF14559_consen    5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQ--------YDEAEELLERLLKQDPDNPEYQ   62 (68)
T ss_dssp             THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT---------HHHHHHHHHCCHGGGTTHHHHH
T ss_pred             cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHCcCHHHHH
Confidence            468999999999999999999999988888877665        6889999999999999874443

...

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=89.28  E-value=12  Score=42.87  Aligned_cols=138  Identities=12%  Similarity=0.017  Sum_probs=89.8

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccc--hhHH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCS--TLQW  189 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~--~~~~  189 (425)
                      .+++|+.+.++|..||++|.||-.-+..+..++  .+++++-+-.-.+....|++--+|.+-.-+..+.....+  ....
T Consensus        18 YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~--q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dIl~ld~~~~   95 (1238)
T KOG1127|consen   18 YEEALEQSKKVLKEDPDNYNAQVFLGVALWSLG--QDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDILDLDRAAK   95 (1238)
T ss_pred             HHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcc--CCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchhhhhhHhHH
Confidence            478999999999999999999999999998886  668999999999999999999999987777765221100  0001


Q ss_pred             h--------HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 045108          190 I--------IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMI  256 (425)
Q Consensus       190 ~--------~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~  256 (425)
                      .        ...+..-.+...+.+|+.|+.+.--- ++   .. .+.+-+..-.+-.+.|++-+-+|.-...+..
T Consensus        96 ~yq~~~l~le~q~~nk~~~lcKk~~d~~~~fk~hl-l~---a~-eigei~~trq~~se~N~~k~~a~~rl~Qi~l  165 (1238)
T KOG1127|consen   96 CYQRAVLILENQSKNKGEALCKKFDDQYYQFKKHL-LV---AK-EIGEIAVTRQDASEKNPKKFWAFCRLGQIQL  165 (1238)
T ss_pred             HHHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHHHH-Hh---hH-HHHHHHhchHhhhhhCHHHHHhhCchHHHHh
Confidence            1        11222333444555666665543221 11   11 1222233333666677777777776666554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=89.27  E-value=10  Score=36.38  Aligned_cols=126  Identities=9%  Similarity=-0.064  Sum_probs=89.2

Q ss_pred             ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhh
Q 045108          147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ  226 (425)
Q Consensus       147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~  226 (425)
                      .+...+..-++++|..+|++|-+|.-|-.+.++++.        .+..-+...+++..+|+|-.+=+.=+|.+..-+.  
T Consensus        49 gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge--------~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~--  118 (250)
T COG3063          49 GDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE--------NDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR--  118 (250)
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--------hhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC--
Confidence            478899999999999999999999999999999876        3455567889999999999988888888877664  


Q ss_pred             HHHHHHHHHHHHhh--cCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHH
Q 045108          227 VLNELKQSRNWSGL--HVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALW  302 (425)
Q Consensus       227 ~~~EL~~~~~~i~~--d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW  302 (425)
                      .++.+....+.+..  .+.-.-.|-....+-.+. +                   -.+..-++.++.++.+|++-.+-
T Consensus       119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~-g-------------------q~~~A~~~l~raL~~dp~~~~~~  176 (250)
T COG3063         119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKA-G-------------------QFDQAEEYLKRALELDPQFPPAL  176 (250)
T ss_pred             hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhc-C-------------------CchhHHHHHHHHHHhCcCCChHH
Confidence            56777777777652  111122333333222221 0                   12334456677888899887653

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=89.06  E-value=12  Score=39.55  Aligned_cols=102  Identities=8%  Similarity=-0.023  Sum_probs=90.2

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .+++++.+..++..-|+|.-.|..+..++....   ...++.+-..+++...|.++.+|-.....+.+.++        .
T Consensus       322 ~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~n---k~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~--------~  390 (484)
T COG4783         322 YDEALKLLQPLIAAQPDNPYYLELAGDILLEAN---KAKEAIERLKKALALDPNSPLLQLNLAQALLKGGK--------P  390 (484)
T ss_pred             cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCC--------h
Confidence            366888999999999999999999999988774   68999999999999999999999999988888776        4


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhch
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTR  224 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~  224 (425)
                      .+.+..+...+..+|.+-..|.+-.-.....+.
T Consensus       391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~  423 (484)
T COG4783         391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN  423 (484)
T ss_pred             HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc
Confidence            688889999999999999999997777766654

>TIGR00540 hemY_coli hemY protein

Probab=88.82  E-value=17  Score=37.53  Aligned_cols=129  Identities=8%  Similarity=-0.197  Sum_probs=90.8

Q ss_pred             HHHHHHHhCC----ccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHH
Q 045108          118 HSKALLLLSC----DFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIER  193 (425)
Q Consensus       118 ~t~~lLl~np----e~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~  193 (425)
                      ....+....|    +...++-.-...+...   +..++.+..+...+.++|++......   ++........   .....
T Consensus       247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~---g~~~~A~~~l~~~l~~~pd~~~~~~~---~l~~~~~l~~---~~~~~  317 (409)
T TIGR00540       247 GLLNWWKNQPRHRRHNIALKIALAEHLIDC---DDHDSAQEIIFDGLKKLGDDRAISLP---LCLPIPRLKP---EDNEK  317 (409)
T ss_pred             HHHHHHHHCCHHHhCCHHHHHHHHHHHHHC---CChHHHHHHHHHHHhhCCCcccchhH---HHHHhhhcCC---CChHH
Confidence            4444556667    3667777666666665   46899999999999999999765311   2222221110   12356


Q ss_pred             HHHHHHHHHHhcCCch--hhhhHHHHHHHhhchhhHHHHHHHHH--HHHhhcCCChhHHHHHHHHHHHh
Q 045108          194 ESELVEKIAERSKMNY--RAWNHRCWLVSFMTREQVLNELKQSR--NWSGLHVADNSCFHYHRRLMIWN  258 (425)
Q Consensus       194 EL~~~~~~l~~~pkNY--~AW~hR~wll~~~~~~~~~~EL~~~~--~~i~~d~~N~SaW~yR~~ll~~l  258 (425)
                      -++.+++.++.+|.|.  ..-..-+|+.-+.+.  +.+..++.+  ..+..+|++..+. +...++..+
T Consensus       318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~--~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~  383 (409)
T TIGR00540       318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGE--FIEAADAFKNVAACKEQLDANDLA-MAADAFDQA  383 (409)
T ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHHHccc--HHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHc
Confidence            6889999999999999  777778999877665  888899999  6888999887766 556666553

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=88.10  E-value=11  Score=34.94  Aligned_cols=106  Identities=4%  Similarity=-0.033  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhch--------hhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccc
Q 045108          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTR--------EQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGF  262 (425)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~--------~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~  262 (425)
                      ++...+-.+....+||.+..+++.-+-.|..+..        ..+++.+.-.+..|.+||..+.+.-.....+..+-.. 
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l-   85 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL-   85 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh-
Confidence            5666677888899999999998887777665531        3678889999999999999998877777666543211 


Q ss_pred             cccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 045108          263 CHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHR  305 (425)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yr  305 (425)
                              ..+..+....++...++.+++...+|+|+.-+.-+
T Consensus        86 --------~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL  120 (186)
T PF06552_consen   86 --------TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL  120 (186)
T ss_dssp             -----------HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred             --------cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence                    00123456789999999999999999999765544

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=87.41  E-value=22  Score=40.71  Aligned_cols=173  Identities=9%  Similarity=-0.031  Sum_probs=100.1

Q ss_pred             cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCch-------------------hhh
Q 045108          110 TVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE-------------------QAW  170 (425)
Q Consensus       110 ~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy-------------------~~W  170 (425)
                      ...+++++.+...+..+|+...++.+-+-+.....   .+.+....  .++...++..                   .+-
T Consensus        45 ~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~---~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al  119 (906)
T PRK14720         45 NLTDEAKDICEEHLKEHKKSISALYISGILSLSRR---PLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLAL  119 (906)
T ss_pred             CCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhc---chhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHH
Confidence            34578999999999999999999999998665543   23333333  4444444333                   333


Q ss_pred             hHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhch-----------------hhHHHHHHH
Q 045108          171 SHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR-----------------EQVLNELKQ  233 (425)
Q Consensus       171 ~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~-----------------~~~~~EL~~  233 (425)
                      ....-+..+++.        ..+..+..+++++.+|.|..|=++=...+.....                 ..+...++.
T Consensus       120 ~~LA~~Ydk~g~--------~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~~i~~kq~~~~~e~  191 (906)
T PRK14720        120 RTLAEAYAKLNE--------NKKLKGVWERLVKADRDNPEIVKKLATSYEEEDKEKAITYLKKAIYRFIKKKQYVGIEEI  191 (906)
T ss_pred             HHHHHHHHHcCC--------hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence            333333333332        5778889999999999999999887777765410                 012233444


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCC---c---hhhhhHHHHHHHHHHHHHHhhcCCCccH
Q 045108          234 SRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSG---Y---FVETYQVWKEELDWNESLIKRYVGREAL  301 (425)
Q Consensus       234 ~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~---~---~~~~~~~~~~EL~~~~~~I~~~p~neSa  301 (425)
                      -.+.|..+|.|+.-+-+   ++.++.+....   +...+   +   .-....-|.+-+.+....++.+|.|.=+
T Consensus       192 W~k~~~~~~~d~d~f~~---i~~ki~~~~~~---~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a  259 (906)
T PRK14720        192 WSKLVHYNSDDFDFFLR---IERKVLGHREF---TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKA  259 (906)
T ss_pred             HHHHHhcCcccchHHHH---HHHHHHhhhcc---chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhh
Confidence            45555555555544322   22222211000   00000   0   0001133567788888888889987765

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=87.27  E-value=6.1  Score=36.52  Aligned_cols=96  Identities=10%  Similarity=-0.025  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHhCCccHHHHHHHHHHHHccC-------CcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccc-
Q 045108          114 EVMIHSKALLLLSCDFATAWNSRKLIVSNKQ-------LLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCS-  185 (425)
Q Consensus       114 ~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~-------~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~-  185 (425)
                      .+.+..+.....||.+..+++.=+-.|..+.       ....+++++.-++.+|.++|+...+-..-.-.+..+....+ 
T Consensus         9 ~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d   88 (186)
T PF06552_consen    9 HARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPD   88 (186)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCC
Confidence            3455667778899999999888787776553       12357888888999999999986554444444433332221 


Q ss_pred             --hhHHhHHHHHHHHHHHHHhcCCch
Q 045108          186 --TLQWIIERESELVEKIAERSKMNY  209 (425)
Q Consensus       186 --~~~~~~~~EL~~~~~~l~~~pkNY  209 (425)
                        .....++....+..++...+|.|-
T Consensus        89 ~~~A~~~F~kA~~~FqkAv~~~P~ne  114 (186)
T PF06552_consen   89 TAEAEEYFEKATEYFQKAVDEDPNNE  114 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence              234556777777777777777664

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=86.59  E-value=0.68  Score=30.44  Aligned_cols=28  Identities=21%  Similarity=0.041  Sum_probs=22.8

Q ss_pred             HHHHHHHhcCCchhhhhHHHHHHHhhch
Q 045108          197 LVEKIAERSKMNYRAWNHRCWLVSFMTR  224 (425)
Q Consensus       197 ~~~~~l~~~pkNY~AW~hR~wll~~~~~  224 (425)
                      ++.++++.+|.|..+|....+++...+.
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~   28 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGD   28 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcC
Confidence            3578889999999999998888877654

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=85.20  E-value=28  Score=38.64  Aligned_cols=63  Identities=8%  Similarity=0.086  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 045108          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLM  255 (425)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll  255 (425)
                      +.+-.+..+..++.+|--...|.-++.+-=++.+  ++...+.....+..+|.|+-+|+......
T Consensus       501 fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek--~q~av~aF~rcvtL~Pd~~eaWnNls~ay  563 (777)
T KOG1128|consen  501 FSEADKHLERSLEINPLQLGTWFGLGCAALQLEK--EQAAVKAFHRCVTLEPDNAEAWNNLSTAY  563 (777)
T ss_pred             HHHHHHHHHHHhhcCccchhHHHhccHHHHHHhh--hHHHHHHHHHHhhcCCCchhhhhhhhHHH
Confidence            4555556666666666666666666555544433  45555666666666666666666655443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=84.56  E-value=12  Score=36.56  Aligned_cols=91  Identities=5%  Similarity=-0.125  Sum_probs=71.0

Q ss_pred             ccHHHHHHHHHHHHhhCCCch---hhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCC---chhhhhHHHHHHH
Q 045108          147 PILMDELRLSAVVLSHSPKSE---QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKM---NYRAWNHRCWLVS  220 (425)
Q Consensus       147 ~~l~~EL~~~~~lL~~~PKsy---~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pk---NY~AW~hR~wll~  220 (425)
                      ..+.+.+..+..++..+|++.   .++.....+....++        +.+.+....++++.+|.   ...||.....+..
T Consensus       157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~--------~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~  228 (263)
T PRK10803        157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGK--------KDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQ  228 (263)
T ss_pred             CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHH
Confidence            368999999999999999994   677655555554433        68888999999988776   5778877777777


Q ss_pred             hhchhhHHHHHHHHHHHHhhcCCChhH
Q 045108          221 FMTREQVLNELKQSRNWSGLHVADNSC  247 (425)
Q Consensus       221 ~~~~~~~~~EL~~~~~~i~~d~~N~Sa  247 (425)
                      .++.  .......+++.++.+|....+
T Consensus       229 ~~g~--~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        229 DKGD--TAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HcCC--HHHHHHHHHHHHHHCcCCHHH
Confidence            6654  678889999999999877654

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=84.23  E-value=6.2  Score=30.78  Aligned_cols=67  Identities=10%  Similarity=0.006  Sum_probs=33.2

Q ss_pred             cHHHHHHHHHHHHhhCCC--chhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhc
Q 045108          148 ILMDELRLSAVVLSHSPK--SEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMT  223 (425)
Q Consensus       148 ~l~~EL~~~~~lL~~~PK--sy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~  223 (425)
                      .+++++.+.+.++...|.  +..+|.....++.+.++        +.+.+.++.+ .+.+|+|..+.....-++-.++
T Consensus         4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~--------y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~   72 (84)
T PF12895_consen    4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGK--------YEEAIELLQK-LKLDPSNPDIHYLLARCLLKLG   72 (84)
T ss_dssp             -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTH--------HHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCC--------HHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhC
Confidence            455555666666655553  34444445555444433        4555555555 5555555444444444444443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=83.86  E-value=31  Score=39.37  Aligned_cols=137  Identities=7%  Similarity=-0.068  Sum_probs=106.4

Q ss_pred             cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHH
Q 045108          110 TVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQW  189 (425)
Q Consensus       110 ~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~  189 (425)
                      ...+.+++++.++|..+|.|.-|-|-=+.+|-..+   .+.+++..+.++-..--+++.+|-.-.-|+-..+.       
T Consensus       626 k~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg---~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~q-------  695 (1018)
T KOG2002|consen  626 KHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKG---RFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQ-------  695 (1018)
T ss_pred             HHHHHHHHHHHHHHhcCcchhhhccchhhhhhhcc---CchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHH-------
Confidence            45688999999999999999999998888887663   67889999999988777899999988877776654       


Q ss_pred             hHHHHHHHHHHHHHhcC-C-chhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 045108          190 IIERESELVEKIAERSK-M-NYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNL  259 (425)
Q Consensus       190 ~~~~EL~~~~~~l~~~p-k-NY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~  259 (425)
                       +...+++.+.++...- + ++++=+|-+-++-.  ...+.+..+...+.+...|.|.+.-..+..+++++-
T Consensus       696 -y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~--~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla  764 (1018)
T KOG2002|consen  696 -YRLAIQMYENCLKKFYKKNRSEVLHYLARAWYE--AGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLA  764 (1018)
T ss_pred             -HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHH
Confidence             6888888888887653 2 34444442222111  124778889999999999999999999999988863

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=83.74  E-value=1.4  Score=28.90  Aligned_cols=26  Identities=23%  Similarity=0.161  Sum_probs=19.6

Q ss_pred             HHHHHHhCCccHHHHHHHHHHHHccC
Q 045108          119 SKALLLLSCDFATAWNSRKLIVSNKQ  144 (425)
Q Consensus       119 t~~lLl~npe~~TaWn~Rr~lL~~~~  144 (425)
                      ..++|.+||++..+|+....++...+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g   27 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQG   27 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCc
Confidence            45677888888888888887777663

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=83.68  E-value=5.3  Score=31.18  Aligned_cols=77  Identities=12%  Similarity=0.025  Sum_probs=59.4

Q ss_pred             hHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHH
Q 045108          112 AIEVMIHSKALLLLSCD--FATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQW  189 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe--~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~  189 (425)
                      .++++...+.++..+|.  +..+|.....++...+   .+.+++.++.. +..+|++..+.....-++.+++.       
T Consensus         5 y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~---~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~-------   73 (84)
T PF12895_consen    5 YENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQG---KYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK-------   73 (84)
T ss_dssp             HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTT---HHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT--------
T ss_pred             HHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCC---CHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC-------
Confidence            46788899999999994  5677888888888774   79999999999 88888887777666666666655       


Q ss_pred             hHHHHHHHHHH
Q 045108          190 IIERESELVEK  200 (425)
Q Consensus       190 ~~~~EL~~~~~  200 (425)
                       +++.+++.++
T Consensus        74 -y~eAi~~l~~   83 (84)
T PF12895_consen   74 -YEEAIKALEK   83 (84)
T ss_dssp             -HHHHHHHHHH
T ss_pred             -HHHHHHHHhc
Confidence             5666666554

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=83.57  E-value=26  Score=40.27  Aligned_cols=133  Identities=10%  Similarity=-0.025  Sum_probs=98.5

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      ...++.+.-.+|.++|....+|-+-+.+....   .+..++.....++...+|-.+++|.+---..-...        .|
T Consensus       474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~---~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~--------~w  542 (1238)
T KOG1127|consen  474 SALALHALIRALRLDVSLAPAFAFLGQIYRDS---DDMKRAKKCFDKAFELDATDAEAAAASADTYAEES--------TW  542 (1238)
T ss_pred             HHHHHHHHHHHHhcccchhHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccc--------cH
Confidence            56678888888999999999999988888766   26788889999999999999999987655443322        36


Q ss_pred             HHHHHHHHHHHHhcCCch--hhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 045108          192 ERESELVEKIAERSKMNY--RAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIW  257 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY--~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~  257 (425)
                      +..+..|....+..|.--  ..|.||+-..  +........+......++.||.|+-+|--..-....
T Consensus       543 e~a~~I~l~~~qka~a~~~k~nW~~rG~yy--Lea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~  608 (1238)
T KOG1127|consen  543 EEAFEICLRAAQKAPAFACKENWVQRGPYY--LEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPE  608 (1238)
T ss_pred             HHHHHHHHHHhhhchHHHHHhhhhhccccc--cCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHh
Confidence            777777888888887644  4555543322  223345667788888899999999999876655443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=83.57  E-value=11  Score=35.57  Aligned_cols=91  Identities=15%  Similarity=0.064  Sum_probs=71.5

Q ss_pred             cchHHHHHHHHHHHHhCCccHH-----HHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhcc
Q 045108          110 TVAIEVMIHSKALLLLSCDFAT-----AWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNC  184 (425)
Q Consensus       110 ~~~~~~L~~t~~lLl~npe~~T-----aWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~  184 (425)
                      ...+++...+..+|.++|...|     ....|...+.++   ...+..+.-|++++..+|-+-.+--.|..+..++..  
T Consensus       109 gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl---~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek--  183 (271)
T KOG4234|consen  109 GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKL---RKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK--  183 (271)
T ss_pred             ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHh---hhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh--
Confidence            3467888999999999999987     222333333333   457888999999999999998888888888887743  


Q ss_pred             chhHHhHHHHHHHHHHHHHhcCCchhh
Q 045108          185 STLQWIIERESELVEKIAERSKMNYRA  211 (425)
Q Consensus       185 ~~~~~~~~~EL~~~~~~l~~~pkNY~A  211 (425)
                            +++.++-..++++.+|++-.|
T Consensus       184 ------~eealeDyKki~E~dPs~~ea  204 (271)
T KOG4234|consen  184 ------YEEALEDYKKILESDPSRREA  204 (271)
T ss_pred             ------HHHHHHHHHHHHHhCcchHHH
Confidence                  789999999999999998744

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=82.12  E-value=14  Score=39.34  Aligned_cols=94  Identities=16%  Similarity=0.111  Sum_probs=65.0

Q ss_pred             hhhHHHHHHHHHHHHHH---HHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHH
Q 045108           76 QILIPVYKAAKHAFISA---LRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDE  152 (425)
Q Consensus        76 ~~l~~ly~~A~~~f~~~---l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~E  152 (425)
                      ..++.+|+.|...|..-   ...|-+-..      ......++-....++|.++|++...|-+=........  ..++..
T Consensus        88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~k------k~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n--~ni~sa  159 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDVKLWLSYIAFCK------KKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEIN--LNIESA  159 (568)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHH------HhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhc--cchHHH
Confidence            34677999998887521   111100000      0112356778899999999999999999776665543  347888


Q ss_pred             HHHHHHHHhhCCCchhhhh--HHHHHH
Q 045108          153 LRLSAVVLSHSPKSEQAWS--HRRWVI  177 (425)
Q Consensus       153 L~~~~~lL~~~PKsy~~W~--hRrwll  177 (425)
                      -.++...|+.||.|+.+|.  .|..+.
T Consensus       160 RalflrgLR~npdsp~Lw~eyfrmEL~  186 (568)
T KOG2396|consen  160 RALFLRGLRFNPDSPKLWKEYFRMELM  186 (568)
T ss_pred             HHHHHHHhhcCCCChHHHHHHHHHHHH
Confidence            9999999999999999996  344433

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=81.80  E-value=3  Score=26.53  Aligned_cols=33  Identities=15%  Similarity=0.074  Sum_probs=27.7

Q ss_pred             hhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCc
Q 045108          168 QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN  208 (425)
Q Consensus       168 ~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN  208 (425)
                      .+|..+..+...++.        +.+.+..+.++++.+|.|
T Consensus         2 ~~~~~~g~~~~~~~~--------~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGD--------YEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT---------HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCC--------chHHHHHHHHHHHHCcCC
Confidence            478888888887765        789999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=81.06  E-value=21  Score=37.10  Aligned_cols=161  Identities=11%  Similarity=0.033  Sum_probs=112.1

Q ss_pred             chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhh---ccch-
Q 045108          111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISR---NCST-  186 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~---~~~~-  186 (425)
                      ..+++.+.|-.+|.+++.+..+-..|+.++-..   .............|+..|..+.+=.-++-+ .++..   .+.+ 
T Consensus       184 ~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~---~~~~ka~~hf~qal~ldpdh~~sk~~~~~~-k~le~~k~~gN~~  259 (486)
T KOG0550|consen  184 DYDEAQSEAIDILKLDATNAEALYVRGLCLYYN---DNADKAINHFQQALRLDPDHQKSKSASMMP-KKLEVKKERGNDA  259 (486)
T ss_pred             cchhHHHHHHHHHhcccchhHHHHhcccccccc---cchHHHHHHHhhhhccChhhhhHHhHhhhH-HHHHHHHhhhhhH
Confidence            467788899999999999999999999988766   367788888888998888877654433321 11111   0000 


Q ss_pred             -hHHhHHHHHHHHHHHHHhcCCch----hhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhcc
Q 045108          187 -LQWIIERESELVEKIAERSKMNY----RAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEG  261 (425)
Q Consensus       187 -~~~~~~~EL~~~~~~l~~~pkNY----~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~  261 (425)
                       ....+...-++...++..+|.|-    +....|.-+.-++++  ..+.+..|+..+++|++=.-|.+-|...-..    
T Consensus       260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgr--l~eaisdc~~Al~iD~syikall~ra~c~l~----  333 (486)
T KOG0550|consen  260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR--LREAISDCNEALKIDSSYIKALLRRANCHLA----  333 (486)
T ss_pred             hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCC--chhhhhhhhhhhhcCHHHHHHHHHHHHHHHH----
Confidence             12346677788889999999864    445557767666665  6788999999999999766665555433222    


Q ss_pred             ccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCC
Q 045108          262 FCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVG  297 (425)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~  297 (425)
                                      ..-|++.+++.++++...-+
T Consensus       334 ----------------le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  334 ----------------LEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             ----------------HHHHHHHHHHHHHHHhhccc
Confidence                            23477777777777765433

>PRK15331 chaperone protein SicA; Provisional

Probab=80.15  E-value=35  Score=31.07  Aligned_cols=105  Identities=11%  Similarity=0.026  Sum_probs=85.6

Q ss_pred             cccchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccH
Q 045108           70 KLGISTQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPIL  149 (425)
Q Consensus        70 ~lgi~~~~l~~ly~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l  149 (425)
                      -.||+...+-.+|..|...|.+                  ..-+++......+...+|-+...|.-=..+.+..   +.+
T Consensus        29 l~gis~~~le~iY~~Ay~~y~~------------------Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~---k~y   87 (165)
T PRK15331         29 VHGIPQDMMDGLYAHAYEFYNQ------------------GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLK---KQF   87 (165)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHC------------------CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHH---HHH
Confidence            3488999999999999877643                  2346788889999999999999888777777776   479


Q ss_pred             HHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHH
Q 045108          150 MDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAE  203 (425)
Q Consensus       150 ~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~  203 (425)
                      +.++.+...+....+++|..-.|-..+...+++        ......+...+++
T Consensus        88 ~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~--------~~~A~~~f~~a~~  133 (165)
T PRK15331         88 QKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK--------AAKARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHHHcccCCCCccchHHHHHHHhCC--------HHHHHHHHHHHHh
Confidence            999999999999999999999999999888876        3556666666655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	425
1o1r_A	380	Structure Of Fpt Bound To Ggpp Length = 380		6e-05
1o5m_A	377	Structure Of Fpt Bound To The Inhibitor Sch66336 Le		7e-05
1qbq_A	333	Structure Of Rat Farnesyl Protein Transferase Compl		8e-05
2f0y_A	379	Crystal Structure Of Human Protein Farnesyltransfer		8e-05
1jcq_A	382	Crystal Structure Of Human Protein Farnesyltransfer		8e-05
3pz4_A	379	Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu		1e-04
1ft1_A	377	Crystal Structure Of Protein Farnesyltransferase At		1e-04
2bed_A	313	Structure Of Fpt Bound To Inhibitor Sch207736 Lengt		1e-04
1nl4_A	312	Crystal Structure Of Rat Farnesyl Transferase In Co		1e-04
2r2l_A	315	Structure Of Farnesyl Protein Transferase Bound To		1e-04
1n95_A	315	Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranf		2e-04
1ft2_A	315	Co-Crystal Structure Of Protein Farnesyltransferase		2e-04
3dra_A	306	Candida Albicans Protein Geranylgeranyltransferase-		5e-04

>pdb|1O1R|A Chain A, Structure Of Fpt Bound To Ggpp Length = 380

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 34/188 (18%)
Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
           T W+ R++++  + L   L +E+     ++   PK+ Q W HRR ++  +      L++I
Sbjct: 135 TVWHFRRVLL--RSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFI 192
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSG-LHVADNSCFH 249
            +        I  +   NY AW HR W++            ++ R W   L   D     
Sbjct: 193 AD--------ILNQDAKNYHAWQHRQWVI------------QEFRLWDNELQYVDQLLKE 232
Query: 250 YHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALW------L 303
             R   +WN   F     +N++GY      V + E+ +   +IK     E+ W      L
Sbjct: 233 DVRNNSVWNQRHFVI---SNTTGY--SDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL 287
Query: 304 HRRFLSLY 311
             R LS Y
Sbjct: 288 QDRGLSRY 295

>pdb|1O5M|A Chain A, Structure Of Fpt Bound To The Inhibitor Sch66336 Length = 377

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 34/188 (18%)
Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
           T W+ R++++  + L   L +E+     ++   PK+ Q W HRR ++  +      L++I
Sbjct: 132 TVWHFRRVLL--RSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFI 189
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSG-LHVADNSCFH 249
            +        I  +   NY AW HR W++            ++ R W   L   D     
Sbjct: 190 AD--------ILNQDAKNYHAWQHRQWVI------------QEFRLWDNELQYVDQLLKE 229
Query: 250 YHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALW------L 303
             R   +WN   F     +N++GY      V + E+ +   +IK     E+ W      L
Sbjct: 230 DVRNNSVWNQRHFVI---SNTTGY--SDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL 284
Query: 304 HRRFLSLY 311
             R LS Y
Sbjct: 285 QDRGLSRY 292

>pdb|1QBQ|A Chain A, Structure Of Rat Farnesyl Protein Transferase Complexed With A Cvim Peptide And Alpha-Hydroxyfarnesylphosphonic Acid Length = 333

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 34/188 (18%)
Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
           T W+ R++++  + L   L +E+     ++   PK+ Q W HRR ++  +      L++I
Sbjct: 88  TVWHFRRVLL--RSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFI 145
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSG-LHVADNSCFH 249
            +        I  +   NY AW HR W++            ++ R W   L   D     
Sbjct: 146 AD--------ILNQDAKNYHAWQHRQWVI------------QEFRLWDNELQYVDQLLKE 185
Query: 250 YHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALW------L 303
             R   +WN   F     +N++GY      V + E+ +   +IK     E+ W      L
Sbjct: 186 DVRNNSVWNQRHFVI---SNTTGY--SDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL 240
Query: 304 HRRFLSLY 311
             R LS Y
Sbjct: 241 QDRGLSRY 248

>pdb|2F0Y|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase Complexed With Farnesyl Diphosphate And Hydantoin Derivative Length = 379

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 77/187 (41%), Gaps = 32/187 (17%)
Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
           T W+ R++++  K L   L +E+     ++   PK+ Q W HRR ++  + R+ S     
Sbjct: 132 TVWHFRRVLL--KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL-RDPS----- 183
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHY 250
             +E E +  I  +   NY AW HR W         V+ E K   N   L   D      
Sbjct: 184 --QELEFIADILNQDAKNYHAWQHRQW---------VIQEFKLWDN--ELQYVDQLLKED 230
Query: 251 HRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALW------LH 304
            R   +WN   F     +N++GY      V + E+ +   +IK     E+ W      L 
Sbjct: 231 VRNNSVWNQRYFVI---SNTTGY--NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ 285
Query: 305 RRFLSLY 311
            R LS Y
Sbjct: 286 DRGLSKY 292

>pdb|1JCQ|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase Complexed With Farnesyl Diphosphate And The Peptidomimetic Inhibitor L-739,750 Length = 382

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
           T W+ R++++  K L   L +E+     ++   PK+ Q W HRR ++  + R+ S     
Sbjct: 132 TVWHFRRVLL--KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL-RDPS----- 183
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLV 219
             +E E +  I  +   NY AW HR W++
Sbjct: 184 --QELEFIADILNQDAKNYHAWQHRQWVI 210

>pdb|3PZ4|A Chain A, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10) In Complex With Bms3 And Lipid Substrate Fpp Length = 379

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 34/188 (18%)
Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
           T W+ R++++  + L   L +E+     ++   PK+ Q W HRR ++  +      L++I
Sbjct: 134 TVWHFRRVLL--RSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFI 191
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSG-LHVADNSCFH 249
            +        I  +   NY AW HR W++            ++ R W   L   D     
Sbjct: 192 AD--------ILNQDAKNYHAWQHRQWVI------------QEFRLWDNELQYVDQLLKE 231
Query: 250 YHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALW------L 303
             R   +WN   F     +N++GY      V + E+ +   +IK     E+ W      L
Sbjct: 232 DVRNNSVWNQRHFVI---SNTTGY--SDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL 286
Query: 304 HRRFLSLY 311
             R LS Y
Sbjct: 287 QDRGLSRY 294

>pdb|1FT1|A Chain A, Crystal Structure Of Protein Farnesyltransferase At 2.25 Angstroms Resolution Length = 377

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 34/188 (18%)
Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
           T W+ R++++  + L   L +E+     ++   PK+ Q W HRR ++  +      L++I
Sbjct: 132 TVWHFRRVLL--RSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFI 189
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSG-LHVADNSCFH 249
            +        I  +   NY AW HR W++            ++ R W   L   D     
Sbjct: 190 AD--------ILNQDAKNYHAWQHRQWVI------------QEFRLWDNELQYVDQLLKE 229
Query: 250 YHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALW------L 303
             R   +WN   F     +N++GY      V + E+ +   +IK     E+ W      L
Sbjct: 230 DVRNNSVWNQRHFVI---SNTTGY--SDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL 284
Query: 304 HRRFLSLY 311
             R LS Y
Sbjct: 285 QDRGLSRY 292

>pdb|2BED|A Chain A, Structure Of Fpt Bound To Inhibitor Sch207736 Length = 313

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 74/188 (39%), Gaps = 34/188 (18%)
Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
           T W+ R++++  + L   L +E+     ++   PK+ Q W HRR ++  +      L   
Sbjct: 79  TVWHFRRVLL--RSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQEL--- 133
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSG-LHVADNSCFH 249
                E +  I  +   NY AW HR W++            ++ R W   L   D     
Sbjct: 134 -----EFIADILNQDAKNYHAWQHRQWVI------------QEFRLWDNELQYVDQLLKE 176
Query: 250 YHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALW------L 303
             R   +WN   F     +N++GY      V + E+ +   +IK     E+ W      L
Sbjct: 177 DVRNNSVWNQRHFVI---SNTTGY--SDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL 231
Query: 304 HRRFLSLY 311
             R LS Y
Sbjct: 232 QDRGLSRY 239

>pdb|1NL4|A Chain A, Crystal Structure Of Rat Farnesyl Transferase In Complex With A Potent Biphenyl Inhibitor Length = 312

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 74/188 (39%), Gaps = 34/188 (18%)
Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
           T W+ R++++  + L   L +E+     ++   PK+ Q W HRR ++  +      L   
Sbjct: 78  TVWHFRRVLL--RSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQEL--- 132
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSG-LHVADNSCFH 249
                E +  I  +   NY AW HR W++            ++ R W   L   D     
Sbjct: 133 -----EFIADILNQDAKNYHAWQHRQWVI------------QEFRLWDNELQYVDQLLKE 175
Query: 250 YHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALW------L 303
             R   +WN   F     +N++GY      V + E+ +   +IK     E+ W      L
Sbjct: 176 DVRNNSVWNQRHFVI---SNTTGY--SDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL 230
Query: 304 HRRFLSLY 311
             R LS Y
Sbjct: 231 QDRGLSRY 238

>pdb|2R2L|A Chain A, Structure Of Farnesyl Protein Transferase Bound To Pb-93 Length = 315

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 74/188 (39%), Gaps = 34/188 (18%)
Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
           T W+ R++++  + L   L +E+     ++   PK+ Q W HRR ++  +      L   
Sbjct: 79  TVWHFRRVLL--RSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQEL--- 133
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSG-LHVADNSCFH 249
                E +  I  +   NY AW HR W++            ++ R W   L   D     
Sbjct: 134 -----EFIADILNQDAKNYHAWQHRQWVI------------QEFRLWDNELQYVDQLLKE 176
Query: 250 YHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALW------L 303
             R   +WN   F     +N++GY      V + E+ +   +IK     E+ W      L
Sbjct: 177 DVRNNSVWNQRHFVI---SNTTGY--SDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL 231
Query: 304 HRRFLSLY 311
             R LS Y
Sbjct: 232 QDRGLSRY 239

>pdb|1N95|A Chain A, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase: Glycine, Phenylalanine And Histidine Derivatives Length = 315

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 74/188 (39%), Gaps = 34/188 (18%)
Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
           T W+ R++++  + L   L +E+     ++   PK+ Q W HRR ++  +      L   
Sbjct: 78  TVWHFRRVLL--RSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQEL--- 132
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSG-LHVADNSCFH 249
                E +  I  +   NY AW HR W++            ++ R W   L   D     
Sbjct: 133 -----EFIADILNQDAKNYHAWQHRQWVI------------QEFRLWDNELQYVDQLLKE 175
Query: 250 YHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALW------L 303
             R   +WN   F     +N++GY      V + E+ +   +IK     E+ W      L
Sbjct: 176 DVRNNSVWNQRHFVI---SNTTGY--SDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL 230
Query: 304 HRRFLSLY 311
             R LS Y
Sbjct: 231 QDRGLSRY 238

>pdb|1FT2|A Chain A, Co-Crystal Structure Of Protein Farnesyltransferase Complexed With A Farnesyl Diphosphate Substrate Length = 315

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 74/188 (39%), Gaps = 34/188 (18%)
Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
           T W+ R++++  + L   L +E+     ++   PK+ Q W HRR ++  +      L   
Sbjct: 78  TVWHFRRVLL--RSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQEL--- 132
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSG-LHVADNSCFH 249
                E +  I  +   NY AW HR W++            ++ R W   L   D     
Sbjct: 133 -----EFIADILNQDAKNYHAWQHRQWVI------------QEFRLWDNELQYVDQLLKE 175
Query: 250 YHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALW------L 303
             R   +WN   F     +N++GY      V + E+ +   +IK     E+ W      L
Sbjct: 176 DVRNNSVWNQRHFVI---SNTTGY--SDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL 230
Query: 304 HRRFLSLY 311
             R LS Y
Sbjct: 231 QDRGLSRY 238

>pdb|3DRA|A Chain A, Candida Albicans Protein Geranylgeranyltransferase-I Complexed With Ggpp Length = 306

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 14/93 (15%)
Query: 133 WNSRKLIV------SNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCST 186
           WN R+LI+      +N    P    E  +   +LS  PK+   WS+R+W+++    +   
Sbjct: 106 WNYRQLIIGQIMELNNNDFDP--YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDA 163
Query: 187 LQWIIERESELVEKIAERSKMNYRAWNHRCWLV 219
                 +E   V+K+ +    N  AW+HR +L+
Sbjct: 164 ------KELSFVDKVIDTDLKNNSAWSHRFFLL 190

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	425
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	2e-33
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-32
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-04
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	4e-31
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	8e-27
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	3e-24
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* Length = 331

 Score =  126 bits (318), Expect = 2e-33
 Identities = 44/241 (18%), Positives = 90/241 (37%), Gaps = 20/241 (8%)

Query: 114 EVMIHSKALLLLSCDFATAWNSRKLIV-------SNKQLLPILMDELRLSAVVLSHSPKS 166
            V+  +  +L  + DFAT WN R+ ++       S ++   ++  EL      L  +PKS
Sbjct: 48  SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS 107

Query: 167 EQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ 226
              W HR W+++ +            RE EL  +  E  + N+  W++R ++ +      
Sbjct: 108 YGTWHHRCWLLSRLPEPN------WARELELCARFLEADERNFHCWDYRRFVAAQA-AVA 160

Query: 227 VLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELD 286
              EL  + +    + ++ S +HY   L+             +S         V  +EL+
Sbjct: 161 PAEELAFTDSLITRNFSNYSSWHYRSCLL------PQLHPQPDSGPQGRLPENVLLKELE 214

Query: 287 WNESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELC 346
             ++        ++ W + R+L           +   +       S     +   +++ C
Sbjct: 215 LVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWC 274

Query: 347 L 347
           L
Sbjct: 275 L 275

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score =  127 bits (321), Expect = 2e-32
 Identities = 41/202 (20%), Positives = 81/202 (40%), Gaps = 20/202 (9%)

Query: 114 EVMIHSKALLLLSCDFATAWNSRKLIV-------SNKQLLPILMDELRLSAVVLSHSPKS 166
            V+  +  +L  + DFAT WN R+ ++       S ++   ++  EL      L  +PKS
Sbjct: 47  SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS 106

Query: 167 EQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ 226
              W HR W+++ +            RE EL  +  E  + N+  W++R ++ +      
Sbjct: 107 YGTWHHRCWLLSRLPEP------NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAP 160

Query: 227 VLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELD 286
              EL  + +    + ++ S +HY   L+             +S         V  +EL+
Sbjct: 161 -AEELAFTDSLITRNFSNYSSWHYRSCLL------PQLHPQPDSGPQGRLPENVLLKELE 213

Query: 287 WNESLIKRYVGREALWLHRRFL 308
             ++        ++ W + R+L
Sbjct: 214 LVQNAFFTDPNDQSAWFYHRWL 235

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 41.3 bits (96), Expect = 6e-04
 Identities = 35/269 (13%), Positives = 84/269 (31%), Gaps = 16/269 (5%)

Query: 132 AWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCST----- 186
            W+ R+ + +   + P   +EL  +  +++ +  +  +W +R  ++  +     +     
Sbjct: 145 CWDYRRFVAAQAAVAP--AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202

Query: 187 -LQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADN 245
             + ++ +E ELV+        +  AW +  WL+       VL  +  SR  + L     
Sbjct: 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACL----- 257

Query: 246 SCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELD-WNESLIKRYVGREALWLH 304
           S        +   +     + D         T          W   L    +  +     
Sbjct: 258 SVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHT 317

Query: 305 RRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANFEDFQ 364
            R +           LL    +   + S     + L   EL +  S        + ++ Q
Sbjct: 318 FRVIWTGSDSQKECVLLKDRPECWCRDS--ATDEQLFRCELSVEKSTVLQSELESCKELQ 375

Query: 365 AQAIHSAAYMLWLTKQIPEYQGINIQEKL 393
                +   +L +   +     +  +++ 
Sbjct: 376 ELEPENKWCLLTIILLMRALDPLLYEKET 404

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 306

 Score =  120 bits (301), Expect = 4e-31
 Identities = 36/195 (18%), Positives = 70/195 (35%), Gaps = 16/195 (8%)

Query: 114 EVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHR 173
             +  ++  +       T W  R  I+ N      L DEL     +   + K+ Q W++R
Sbjct: 51  RALHITELGINELASHYTIWIYRFNILKNLPNRN-LYDELDWCEEIALDNEKNYQIWNYR 109

Query: 174 RWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQ 233
           + +I  I    +   +   RE +++E +      N+  W++R WLV          EL  
Sbjct: 110 QLIIGQIMELNNN-DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSF 168

Query: 234 SRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIK 293
                   + +NS + +   L+               S   + T     EEL++ +  I 
Sbjct: 169 VDKVIDTDLKNNSAWSHRFFLL--------------FSKKHLATDNTIDEELNYVKDKIV 214

Query: 294 RYVGREALWLHRRFL 308
           +     + W +   +
Sbjct: 215 KCPQNPSTWNYLLGI 229

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Length = 349

 Score =  109 bits (272), Expect = 8e-27
 Identities = 49/311 (15%), Positives = 97/311 (31%), Gaps = 45/311 (14%)

Query: 114 EVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHR 173
             +  ++ ++ ++    T W  R  ++++  L   L DELRL       + KS Q W HR
Sbjct: 72  RALELTEIIVRMNPAHYTVWQYRFSLLTS--LNKSLEDELRLMNEFAVQNLKSYQVWHHR 129

Query: 174 RWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFM------TREQV 227
             +++ IS            E E +         NY  W +  WL S        +  Q 
Sbjct: 130 LLLLDRISPQD------PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQW 183

Query: 228 LNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDW 287
            +EL        +   +NS +   R  +  +  G               + +  ++EL +
Sbjct: 184 GSELDWCNEMLRVDGRNNSAWG-WRWYLRVSRPGAE------------TSSRSLQDELIY 230

Query: 288 NESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCL 347
               I       + W + R      +KH +  L+ +     P  +  ++ D         
Sbjct: 231 ILKSIHLIPHNVSAWNYLRG----FLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGF 286

Query: 348 VHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQIPEYQGINIQEKLQAGAGDLMRMLKRS 407
                    D                + +L     E   ++   K+        ++    
Sbjct: 287 PMPSDPLPEDTPLP--------VPLALEYLADSFIEQNRVDDAAKV------FEKLSSEY 332

Query: 408 CPDRSSLWDYL 418
              R+  W++ 
Sbjct: 333 DQMRAGYWEFR 343

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score =  102 bits (255), Expect = 3e-24
 Identities = 40/195 (20%), Positives = 78/195 (40%), Gaps = 26/195 (13%)

Query: 114 EVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHR 173
                ++  + L+    T W+ R++++ +  L   L +E+     ++   PK+ Q W HR
Sbjct: 115 RAFKLTRDAIELNAANYTVWHFRRVLLKS--LQKDLHEEMNYITAIIEEQPKNYQVWHHR 172

Query: 174 RWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQ 233
           R ++  +            +E E +  I  +   NY AW HR W++     +   NEL+ 
Sbjct: 173 RVLVEWLRDP--------SQELEFIADILNQDAKNYHAWQHRQWVIQEF--KLWDNELQY 222

Query: 234 SRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIK 293
                   V +NS ++  R  +I N  G+                 V + E+ +   +IK
Sbjct: 223 VDQLLKEDVRNNSVWN-QRYFVISNTTGY-------------NDRAVLEREVQYTLEMIK 268

Query: 294 RYVGREALWLHRRFL 308
                E+ W + + +
Sbjct: 269 LVPHNESAWNYLKGI 283

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 48.5 bits (115), Expect = 2e-06
 Identities = 29/176 (16%), Positives = 65/176 (36%), Gaps = 18/176 (10%)

Query: 132 AWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191
           AW  R+ ++       +  +EL+    +L    ++   W+ R +VI+  +      + ++
Sbjct: 202 AWQHRQWVIQE---FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND--RAVL 256

Query: 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYH 251
           ERE +   ++ +    N  AWN+   ++      +  N L Q  +   L  + +S     
Sbjct: 257 EREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLD---LQPSHSS----- 308

Query: 252 RRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRY-VGREALWLHRR 306
                + +     I ++           +  + L+  E L K     R+  W +  
Sbjct: 309 ----PYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIG 360

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 1e-06
 Identities = 49/408 (12%), Positives = 115/408 (28%), Gaps = 103/408 (25%)

Query: 64  FWIRDHKLGISTQILIPV----YKAAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHS 119
           FW+          +L  +    Y+   +    +               +    ++   + 
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 120 KALLLL--------------SC------------DFATAWNSRKLIVSNKQLLPILMDE- 152
             LL+L              SC            DF +A  +   I  +   + +  DE 
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA-ATTTHISLDHHSMTLTPDEV 303

Query: 153 LRLSAVVLSHSPKS--EQAWSHRRWVINMISRNC----STLQWIIERESELVEKIAERS- 205
             L    L   P+    +  +     +++I+ +     +T         + +  I E S 
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363

Query: 206 --------KMNYRAWNHRCWLVSFMTR----EQVLNELKQSRNWSGLHVAD-----NSCF 248
                   +  +        L  F         +L+ +     W  +  +D     N   
Sbjct: 364 NVLEPAEYRKMFDR------LSVFPPSAHIPTILLSLI-----WFDVIKSDVMVVVNKL- 411

Query: 249 HYHRRLMI--WNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREAL--W-L 303
             H+  ++     E    I       Y     ++ + E   + S++  Y   +      L
Sbjct: 412 --HKYSLVEKQPKESTISIPS----IYLELKVKL-ENEYALHRSIVDHYNIPKTFDSDDL 464

Query: 304 HRRFLSLYLIKHIATHLLGVSCQSK----PKASVDID-IDSLMDHELCLVHSCSTTIPDA 358
              +L  Y   HI  HL  +    +        +D   ++  + H+    ++  + +   
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT- 523

Query: 359 NFEDFQAQAIHSAAYMLWLTKQIPEYQGINIQEKLQAGAGDLMRMLKR 406
             +  +        Y  ++    P+Y+ +            ++  L +
Sbjct: 524 -LQQLK-------FYKPYICDNDPKYERL---------VNAILDFLPK 554

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 48/352 (13%), Positives = 103/352 (29%), Gaps = 123/352 (34%)

Query: 1   MSTSENSYSEAEALNLLAQLERILDLDP--LIDEVGFIHPSQLATLKEEIGNSLSSEDKD 58
           +     + +  E  +LL    + LD  P  L  EV   +P +L+ + E I        +D
Sbjct: 291 LDHHSMTLTPDEVKSLLL---KYLDCRPQDLPREVLTTNPRRLSIIAESI--------RD 339

Query: 59  HESTS-FWIR------DHKLGISTQILIPVYKAAKHAFISALRQ-YKTPGNFSGKSQDDT 110
             +T   W           +  S  +L P             R+ +     F        
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAE----------YRKMFDRLSVF----PPS- 384

Query: 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS---- 166
                 I +  L L+       W         K  + +++++L   ++V     +S    
Sbjct: 385 ----AHIPTILLSLI-------WFD-----VIKSDVMVVVNKLHKYSLVEKQPKESTISI 428

Query: 167 ------------EQAWSHRRWVINMISRNCSTLQWIIE----------------RESELV 198
                        +   HR  +++  +   +     +                 +  E  
Sbjct: 429 PSIYLELKVKLENEYALHRS-IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487

Query: 199 EKIAERSK--MNYRAWNHRCWL--------VSFMTREQVLNELKQSRNWSGLHVADNSCF 248
           E++       +++R      +L         ++     +LN L+Q + +   ++ DN   
Sbjct: 488 ERMTLFRMVFLDFR------FLEQKIRHDSTAWNASGSILNTLQQLKFYKP-YICDN-DP 539

Query: 249 HYHRRLMIWNLEGFCH--------------IQ---DNNSSGYFVETY-QVWK 282
            Y R  ++  +  F                ++          F E + QV +
Sbjct: 540 KYER--LVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 9e-05
 Identities = 46/360 (12%), Positives = 97/360 (26%), Gaps = 111/360 (30%)

Query: 141 SNKQLLPILM-------------DELR--LSAVVLSH---SPKSEQAWSHRRWVINMISR 182
             K +L +               D  +  LS   + H   S  +       R    ++S+
Sbjct: 17  QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG--TLRLFWTLLSK 74

Query: 183 NCSTLQWIIERESE-----LVEKIAERSK------MNYRAWNHRCWLVS------FMTRE 225
               +Q  +E         L+  I    +        Y     R +  +       ++R 
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134

Query: 226 QVLNELK------QSRNWSGLH---------VADNSCFHYHRRLMI-----W-------- 257
           Q   +L+      +      +          VA + C  Y  +  +     W        
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 258 ------NLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLY 311
                  L+   +  D N +    +     K  +   ++ ++R      L   + + +  
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSR-SDHSSNIKLRIHSIQAELRR------LLKSKPYENCL 247

Query: 312 LI-------KHIATHLLGVSCQ----SKPKASVDIDIDSLMDHELCLVHSCSTTIPDANF 360
           L+       K        +SC+    ++ K   D  + +     + L H   T  PD   
Sbjct: 248 LVLLNVQNAKAWNA--FNLSCKILLTTRFKQVTDF-LSAATTTHISLDHHSMTLTPDEVK 304

Query: 361 EDFQAQAIHSAAYMLWLTKQIPEYQGINIQEKLQAGAGD--LMRMLKRSCPDRSSLWDYL 418
                + +      L      P           +    +   + ++  S  D  + WD  
Sbjct: 305 SLL-LKYLDCRPQDL------PR----------EVLTTNPRRLSIIAESIRDGLATWDNW 347

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	425
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	100.0
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	100.0
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	100.0
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	100.0
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	100.0
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	100.0
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.97
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.97
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.94
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.8
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.12
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.12
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.95
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.85
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.85
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.84
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.83
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.81
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.79
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.77
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.72
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.71
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.69
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.69
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.68
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.68
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.67
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.65
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.64
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.64
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.64
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.63
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.62
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.6
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.6
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.57
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.55
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.53
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.53
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.53
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.51
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.51
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.51
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.5
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.49
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.49
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.49
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.49
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.47
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.46
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.46
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.45
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.44
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.44
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.44
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.43
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.42
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.42
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.41
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.4
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.4
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.37
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.35
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.35
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.34
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.29
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.28
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.27
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.26
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.22
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.2
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.2
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.18
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.14
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.13
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.12
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.1
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.09
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.08
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.07
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.04
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.03
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.02
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.0
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.99
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.99
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.99
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.98
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.97
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.95
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.94
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.93
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.93
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.91
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.91
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.91
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.9
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.89
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.86
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	97.86
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.85
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.84
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.81
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.81
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.79
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.79
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.78
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.77
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.76
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.73
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.73
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.73
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.69
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.64
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.63
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.62
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.6
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.59
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.59
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.59
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.57
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.52
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.51
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.51
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.5
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.47
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.44
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.44
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.43
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.39
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.37
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.36
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.34
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.29
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.28
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.27
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.24
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.23
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.18
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.15
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.01
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	96.97
2kat_A	115	Uncharacterized protein; NESG, structure, structur	96.92
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.85
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.82
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	96.78
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.61
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	96.49
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	96.49
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	96.38
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.29
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.22
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.18
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	96.16
2l6j_A	111	TPR repeat-containing protein associated with HSP;	95.97
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	95.87
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	95.82
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	95.72
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	95.7
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	95.41
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	95.13
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	95.1
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	95.06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	94.72
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	94.4
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	94.21
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	93.0
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	92.65
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	92.16
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	91.81
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	91.34
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	90.77
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	90.74
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	89.81
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	89.31
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	88.62
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	88.44
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	88.27
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	86.67
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	86.1
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	84.45
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	81.83
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	80.46

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=100.00  E-value=3.5e-50  Score=403.07  Aligned_cols=321  Identities=17%  Similarity=0.171  Sum_probs=236.9

Q ss_pred             hhccCCCCCcccccCCcchhhchhhhccCCCCCCCCCCCCceEeecccccchhhhhHHHHHHHHHHHHHHHHhhcCCCCC
Q 045108           23 ILDLDPLIDEVGFIHPSQLATLKEEIGNSLSSEDKDHESTSFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNF  102 (425)
Q Consensus        23 ~l~~dp~idei~~i~~~~~~~~~~e~~~~~~~~~~~~e~~p~~~~~~~lgi~~~~l~~ly~~A~~~f~~~l~~y~~~~~~  102 (425)
                      .++.+|.|++|.+||..       + |             |       =+|-...+.+.|+.|...|+..++        
T Consensus        22 ~~~~~~~w~dv~p~~~~-------~-~-------------~-------~~~~~i~y~~~y~~~~~~~r~~~~--------   65 (349)
T 3q7a_A           22 PMSQRRSWADVKPIMQD-------D-G-------------P-------NPVVPIMYSEEYKDAMDYFRAIAA--------   65 (349)
T ss_dssp             CTTSCGGGTTCCCCCCC-------C-C-------------S-------SCSSCBCCCHHHHHHHHHHHHHHH--------
T ss_pred             CcccCcccCCCcccCCC-------C-C-------------C-------CCeeeeeeCHHHHHHHHHHHHHHH--------
Confidence            45668999999988832       1 1             1       134455668899999999988877        


Q ss_pred             CCCCCCccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhh
Q 045108          103 SGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISR  182 (425)
Q Consensus       103 ~~~~~~~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~  182 (425)
                           .+++++++|++|+.+|.+||+||||||+||.+|..++  ..+++||.+++.+|..|||+|++|+||+|++.++..
T Consensus        66 -----~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~--~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~  138 (349)
T 3q7a_A           66 -----KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLN--KSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISP  138 (349)
T ss_dssp             -----TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCC
T ss_pred             -----hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC
Confidence                 3578899999999999999999999999999999985  469999999999999999999999999999999822


Q ss_pred             ccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchh------hHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 045108          183 NCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTRE------QVLNELKQSRNWSGLHVADNSCFHYHRRLMI  256 (425)
Q Consensus       183 ~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~------~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~  256 (425)
                      .      .+.+||++|.++++++|||||||+||+|++.+++..      .+.+|+++++++|+.||+|+|||+||++++.
T Consensus       139 ~------~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~  212 (349)
T 3q7a_A          139 Q------DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRV  212 (349)
T ss_dssp             S------CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             C------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            1      147999999999999999999999999999998652      3569999999999999999999999999998


Q ss_pred             HhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhccCcCCCCCCCCCchhh
Q 045108          257 WNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDID  336 (425)
Q Consensus       257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~~~~~~~~~~~~~s~~~~~~~~~~~~  336 (425)
                      ++...             .....++++|+++++++|..+|+|+|+|+|+|+|+.........-...+.+..  .+.+   
T Consensus       213 ~l~~~-------------~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~--~~~~---  274 (349)
T 3q7a_A          213 SRPGA-------------ETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYT--ASKL---  274 (349)
T ss_dssp             TSTTC-------------CCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGT--C------
T ss_pred             hcccc-------------ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccc--cccc---
Confidence            76321             01245799999999999999999999999999999753211000000000000  0000   


Q ss_pred             HHHHHHHHHHHHHhhhccCCCCcchhHHHhHHHHHHHHHHHhhhhcccccchhhhhhhcchhhHHHHHh-hhCCCccchh
Q 045108          337 IDSLMDHELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQIPEYQGINIQEKLQAGAGDLMRMLK-RSCPDRSSLW  415 (425)
Q Consensus       337 ~~~~l~~E~~lv~~~~~~~p~d~~~~~~~qs~~~~~y~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~p~r~~~w  415 (425)
                       ...+..=.+++.+.+   ++.........   +.+++.+|++.+.+. |   +.   ..+..+.+.|+ ++||+|++||
T Consensus       275 -~~~~~~~~~~~~~~~---~~~~~~~~~~~---s~~al~~l~d~~~~~-~---~~---~~a~~~~~~l~~~~dpir~~yw  340 (349)
T 3q7a_A          275 -NPDIETVEAFGFPMP---SDPLPEDTPLP---VPLALEYLADSFIEQ-N---RV---DDAAKVFEKLSSEYDQMRAGYW  340 (349)
T ss_dssp             ------------CCCC---C-CCCSSCCSC---CHHHHHHHHHHHHHT-T---CH---HHHHHHHHHHHHTTCGGGHHHH
T ss_pred             -cccchhHHHHHHHHH---hcccccccCCC---cHHHHHHHHHHHHhc-C---CH---HHHHHHHHHHHhhhChHHHHHH
Confidence             001111111122222   11100111123   467899999998765 4   11   24777888887 9999999999


Q ss_pred             hhhhccCCC
Q 045108          416 DYLVGYHSE  424 (425)
Q Consensus       416 ~~~~~~~~~  424 (425)
                      +|+++.+.|
T Consensus       341 ~~~~~~~~~  349 (349)
T 3q7a_A          341 EFRRRECAE  349 (349)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHhhcC
Confidence            999998765

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=100.00  E-value=2.2e-49  Score=391.70  Aligned_cols=282  Identities=18%  Similarity=0.202  Sum_probs=223.0

Q ss_pred             chhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHH
Q 045108           73 ISTQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDE  152 (425)
Q Consensus        73 i~~~~l~~ly~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~E  152 (425)
                      |-...+...|+.++..|++.++             .+++++++|++|+.+|.+||+||||||+||.+|..++ ...+++|
T Consensus        23 ~~~i~y~~~y~~~~~~~~a~~~-------------~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~-~~~~~ee   88 (306)
T 3dra_A           23 ICQILYDEDYKQIMGLLLALMK-------------AEEYSERALHITELGINELASHYTIWIYRFNILKNLP-NRNLYDE   88 (306)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHH-------------TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCT-TSCHHHH
T ss_pred             ceeeeeCHHHHHHHHHHHHHHH-------------cCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcc-cccHHHH
Confidence            3344557889999999998876             4688999999999999999999999999999999873 1389999


Q ss_pred             HHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHH
Q 045108          153 LRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELK  232 (425)
Q Consensus       153 L~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~  232 (425)
                      |.+++.+|..|||+|++|+||+|+++++...... ...+++||++|+++++.+|||||||+||+|++.+++.....+|++
T Consensus        89 L~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~-~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~  167 (306)
T 3dra_A           89 LDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN-DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELS  167 (306)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT-CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             HHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHH
Confidence            9999999999999999999999999665432100 023689999999999999999999999999999998632349999


Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Q 045108          233 QSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLYL  312 (425)
Q Consensus       233 ~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~~  312 (425)
                      +++++|+.||+|+||||||++++.++...              ....++++|+++++++|..+|+|+|+|+||++++...
T Consensus       168 ~~~~~i~~d~~N~sAW~~R~~ll~~l~~~--------------~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~  233 (306)
T 3dra_A          168 FVDKVIDTDLKNNSAWSHRFFLLFSKKHL--------------ATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERF  233 (306)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHSSGGG--------------CCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhcccc--------------chhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhc
Confidence            99999999999999999999999876321              1235799999999999999999999999999999753


Q ss_pred             HHHHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHHHhhhccCCCCcchhHHHhHHHHHHHHHHHhhhhcccccchhhhh
Q 045108          313 IKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQIPEYQGINIQEK  392 (425)
Q Consensus       313 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv~~~~~~~p~d~~~~~~~qs~~~~~y~~WL~~~~~~~~~~~~~~~  392 (425)
                      .+                  ..+....|.       ..++..++.      ...   +...+.||.+.+.+. |    . 
T Consensus       234 ~~------------------~~~~~~~~~-------~~~~~~~~~------~~~---s~~al~~la~~~~~~-~----~-  273 (306)
T 3dra_A          234 DR------------------SITQLEEFS-------LQFVDLEKD------QVT---SSFALETLAKIYTQQ-K----K-  273 (306)
T ss_dssp             TC------------------CGGGGHHHH-------HTTEEGGGT------EES---CHHHHHHHHHHHHHT-T----C-
T ss_pred             CC------------------ChHHHHHHH-------HHHHhccCC------CCC---CHHHHHHHHHHHHcc-C----C-
Confidence            21                  011222332       222222100      012   355789999988755 4    1 


Q ss_pred             hhcchhhHHHHHh-hhCCCccchhhhhhccCCC
Q 045108          393 LQAGAGDLMRMLK-RSCPDRSSLWDYLVGYHSE  424 (425)
Q Consensus       393 ~~~~~~~~~~~l~-~~~p~r~~~w~~~~~~~~~  424 (425)
                      . .++..+.+.|. |+||+|.+||+|+++.+..
T Consensus       274 ~-~~A~~~~~~l~~~~Dpir~~yW~~~~~~l~~  305 (306)
T 3dra_A          274 Y-NESRTVYDLLKSKYNPIRSNFWDYQISKLTS  305 (306)
T ss_dssp             H-HHHHHHHHHHHHTTCGGGHHHHHHHHHTCC-
T ss_pred             H-HHHHHHHHHHHhccChHHHHHHHHHHhhccc
Confidence            1 24777888888 7999999999999998863

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=100.00  E-value=4.8e-46  Score=371.08  Aligned_cols=285  Identities=19%  Similarity=0.270  Sum_probs=224.4

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCC-------cccHHH
Q 045108           79 IPVYKAAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQL-------LPILMD  151 (425)
Q Consensus        79 ~~ly~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~-------~~~l~~  151 (425)
                      ++.|+.++..|+..++             .+++++++|++|+.+|.+||+||||||+||.+|..+..       ...+++
T Consensus        26 i~~y~~~~~~~~~~~~-------------~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~   92 (331)
T 3dss_A           26 LKLYQSATQAVFQKRQ-------------AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKA   92 (331)
T ss_dssp             HHHHHHHHHHHHHHHH-------------TTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHH
Confidence            6789999999988766             46889999999999999999999999999999988740       012789


Q ss_pred             HHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHH
Q 045108          152 ELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNEL  231 (425)
Q Consensus       152 EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL  231 (425)
                      ||.+++.+|..|||||++|+||+|++.++...      .+++||++|+++++.||||||||+||+||+..++.. +++|+
T Consensus        93 EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~------~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~-~~eel  165 (331)
T 3dss_A           93 ELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP------NWARELELCARFLEADERNFHCWDYRRFVAAQAAVA-PAEEL  165 (331)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSC------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC-HHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHhccCcc------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC-HHHHH
Confidence            99999999999999999999999999988641      378999999999999999999999999999998752 58999


Q ss_pred             HHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q 045108          232 KQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLY  311 (425)
Q Consensus       232 ~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~  311 (425)
                      ++++++|+.||+|+|||+||++++.++......+    ..  .......+++|++++.++|..+|+|+|+|+|+|+|+..
T Consensus       166 ~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~----~~--~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~  239 (331)
T 3dss_A          166 AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG----PQ--GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGA  239 (331)
T ss_dssp             HHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccc----cc--cccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999874321100    00  01123579999999999999999999999999999965


Q ss_pred             HHHHHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHHHhhhccCCCCcchhHHHhHHHHHHHHHHHhhhhcccccchhhh
Q 045108          312 LIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQIPEYQGINIQE  391 (425)
Q Consensus       312 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv~~~~~~~p~d~~~~~~~qs~~~~~y~~WL~~~~~~~~~~~~~~  391 (425)
                      ...         .+.      ........+++|++.+.+++..+|++.  |. .-+      .-.+...+ +..|.   +
T Consensus       240 ~~~---------~~~------~~~~~~~~l~~el~~~~elle~~pd~~--w~-l~~------~~~~~~~~-~~~~~---~  291 (331)
T 3dss_A          240 GSG---------RCE------LSVEKSTVLQSELESCKELQELEPENK--WC-LLT------IILLMRAL-DPLLY---E  291 (331)
T ss_dssp             SSC---------GGG------CCHHHHHHHHHHHHHHHHHHHHCTTCH--HH-HHH------HHHHHHHH-CTTTT---H
T ss_pred             ccC---------ccc------cchHHHHHHHHHHHHHHHHHhhCcccc--hH-HHH------HHHHHHhh-ccccc---H
Confidence            211         000      113467889999999999999999772  21 111      11111111 12121   1


Q ss_pred             hhhcchhhHHHHHhhhCCCccchhhhhhc
Q 045108          392 KLQAGAGDLMRMLKRSCPDRSSLWDYLVG  420 (425)
Q Consensus       392 ~~~~~~~~~~~~l~~~~p~r~~~w~~~~~  420 (425)
                         .....++.-|.+.||.|++||..+..
T Consensus       292 ---~~~~~~l~~l~~~Dp~r~~~y~d~~~  317 (331)
T 3dss_A          292 ---KETLQYFSTLKAVDPMRAAYLDDLRS  317 (331)
T ss_dssp             ---HHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHhCcchhhHHHHHHH
Confidence               13566788888999999999987653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=100.00  E-value=2.1e-36  Score=322.12  Aligned_cols=208  Identities=21%  Similarity=0.309  Sum_probs=180.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCccc-------
Q 045108           76 QILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPI-------  148 (425)
Q Consensus        76 ~~l~~ly~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~-------  148 (425)
                      ..-++.|+.|+..|++.++             .+++++++++.|+.+|.+||++|||||+||.++..++  ..       
T Consensus        22 ~~k~~~y~~~~~~~~~~~~-------------~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~--~~~~~~~~~   86 (567)
T 1dce_A           22 EQKLKLYQSATQAVFQKRQ-------------AGELDESVLELTSQILGANPDFATLWNCRREVLQHLE--TEKSPEESA   86 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-------------TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--TTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH-------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcc--cccchhhhh
Confidence            3348899999999998765             3688999999999999999999999999999999875  21       


Q ss_pred             --HHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhh
Q 045108          149 --LMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ  226 (425)
Q Consensus       149 --l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~  226 (425)
                        +++|+.+++.+|..+||+|++|+||+|++.++...      .+++|+++|+++++.||+|||||+||+|++..++. .
T Consensus        87 ~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~------~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~-~  159 (567)
T 1dce_A           87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP------NWARELELCARFLEADERNFHCWDYRRFVAAQAAV-A  159 (567)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC-C
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc------cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCC-C
Confidence              89999999999999999999999999999988632      37999999999999999999999999999999983 3


Q ss_pred             HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 045108          227 VLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRR  306 (425)
Q Consensus       227 ~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr  306 (425)
                      +++|+++++++|+.||+|+|||+||++++.++........    .+  ......+++|++++.++|..+|+|+|+|+|+|
T Consensus       160 ~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~----~~--~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~  233 (567)
T 1dce_A          160 PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP----QG--RLPENVLLKELELVQNAFFTDPNDQSAWFYHR  233 (567)
T ss_dssp             HHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS----CC--SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc----cc--cccHHHHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence            7899999999999999999999999999998743211000    00  11235799999999999999999999999999


Q ss_pred             HHHHH
Q 045108          307 FLSLY  311 (425)
Q Consensus       307 ~Ll~~  311 (425)
                      +++..
T Consensus       234 ~ll~~  238 (567)
T 1dce_A          234 WLLGR  238 (567)
T ss_dssp             HHHSC
T ss_pred             HHHhc
Confidence            99965

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=100.00  E-value=1.1e-34  Score=290.87  Aligned_cols=212  Identities=16%  Similarity=0.246  Sum_probs=181.6

Q ss_pred             HHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHH
Q 045108          122 LLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKI  201 (425)
Q Consensus       122 lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~  201 (425)
                      -|..+|++..+|++++.++.+..   ..+++|.+++.+|..||++|++|+||++++..++.       .+++||++++.+
T Consensus        46 ~i~y~~~y~~~~~~~r~~~~~~e---~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~-------~l~eEL~~~~~~  115 (349)
T 3q7a_A           46 PIMYSEEYKDAMDYFRAIAAKEE---KSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNK-------SLEDELRLMNEF  115 (349)
T ss_dssp             CBCCCHHHHHHHHHHHHHHHTTC---CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------CHHHHHHHHHHH
T ss_pred             eeeeCHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhh-------hHHHHHHHHHHH
Confidence            35788999999999999999885   44789999999999999999999999999998863       379999999999


Q ss_pred             HHhcCCchhhhhHHHHHHHhh-chhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHH
Q 045108          202 AERSKMNYRAWNHRCWLVSFM-TREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQV  280 (425)
Q Consensus       202 l~~~pkNY~AW~hR~wll~~~-~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~  280 (425)
                      +..+||||.||+||+|++..+ +. ...+||++++++++.||+|++||+||++++.++...            ......+
T Consensus       116 L~~nPKny~aW~hR~wlL~~l~~~-~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~------------~~~~~~~  182 (349)
T 3q7a_A          116 AVQNLKSYQVWHHRLLLLDRISPQ-DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTL------------GRISEAQ  182 (349)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHHCCS-CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHT------------TCCCHHH
T ss_pred             HHhCCCcHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc------------cccchhh
Confidence            999999999999999999998 51 367999999999999999999999999999986431            0012457


Q ss_pred             HHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHHHhhhccCCCCcc
Q 045108          281 WKEELDWNESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANF  360 (425)
Q Consensus       281 ~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv~~~~~~~p~d~~  360 (425)
                      +.+||++++++|+.+|+|+|+|+||++++..+.+        .           ......+++|+++++++++++|+|++
T Consensus       183 ~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~--------~-----------~~~~~~~~eELe~~~~aI~~~P~n~S  243 (349)
T 3q7a_A          183 WGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG--------A-----------ETSSRSLQDELIYILKSIHLIPHNVS  243 (349)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT--------C-----------CCCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc--------c-----------ccchHHHHHHHHHHHHHHHhCCCCHH
Confidence            8999999999999999999999999999865311        0           01246789999999999999999844


Q ss_pred             hhHHHhHHHHHHHHHHHhhhhccc
Q 045108          361 EDFQAQAIHSAAYMLWLTKQIPEY  384 (425)
Q Consensus       361 ~~~~~qs~~~~~y~~WL~~~~~~~  384 (425)
                               +|.|++||+......
T Consensus       244 ---------aW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          244 ---------AWNYLRGFLKHFSLP  258 (349)
T ss_dssp             ---------HHHHHHHHHHHTTCC
T ss_pred             ---------HHHHHHHHHHhcCCC
Confidence                     788999999875543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=100.00  E-value=1.1e-33  Score=282.07  Aligned_cols=193  Identities=23%  Similarity=0.351  Sum_probs=161.7

Q ss_pred             HHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhcc--chhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhh
Q 045108          149 LMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNC--STLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ  226 (425)
Q Consensus       149 l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~--~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~  226 (425)
                      -+++|.+|+.+|..||++||+|+||++++..+....  ......+.+||.+++.++..+||||++|+||+|++..++.+.
T Consensus        46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~  125 (331)
T 3dss_A           46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN  125 (331)
T ss_dssp             SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence            367899999999999999999999999999887531  123346899999999999999999999999999999998656


Q ss_pred             HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 045108          227 VLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRR  306 (425)
Q Consensus       227 ~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr  306 (425)
                      +.+|+++++++++.||+|||||+||++++..+..                   .+++|+++++++|..+|+|+|+|+||+
T Consensus       126 ~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~-------------------~~~eel~~~~~~I~~~p~N~SAW~~R~  186 (331)
T 3dss_A          126 WARELELCARFLEADERNFHCWDYRRFVAAQAAV-------------------APAEELAFTDSLITRNFSNYSSWHYRS  186 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------------CHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc-------------------CHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            8999999999999999999999999999987521                   268999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHHHhhhccCCCCcchhHHHhHHHHHHHHHHHhhhh
Q 045108          307 FLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQI  381 (425)
Q Consensus       307 ~Ll~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv~~~~~~~p~d~~~~~~~qs~~~~~y~~WL~~~~  381 (425)
                      +++..+....     +.+    ..   .......+++|++++.++++++|+|       ||  +|.|++||+...
T Consensus       187 ~ll~~l~~~~-----~~~----~~---~~~~~~~~~eEle~~~~ai~~~P~d-------~S--aW~Y~r~ll~~~  240 (331)
T 3dss_A          187 CLLPQLHPQP-----DSG----PQ---GRLPENVLLKELELVQNAFFTDPND-------QS--AWFYHRWLLGAG  240 (331)
T ss_dssp             HHHHHHSCCC------------------CCCHHHHHHHHHHHHHHHHHSTTC-------HH--HHHHHHHHHHSS
T ss_pred             HHHHHhhhcc-----ccc----cc---cccchHHHHHHHHHHHHHHHhCCCC-------HH--HHHHHHHHHHhc
Confidence            9998652110     000    00   0112367899999999999999999       44  788999999775

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.97  E-value=1.9e-30  Score=276.25  Aligned_cols=193  Identities=22%  Similarity=0.352  Sum_probs=162.7

Q ss_pred             HHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhcc--chhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhH
Q 045108          150 MDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNC--STLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQV  227 (425)
Q Consensus       150 ~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~--~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~  227 (425)
                      ++++.+++.+|..||++|++|+||++++.+++...  ......+++||++++++++.+||||+||+||+|++.+++...+
T Consensus        46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~  125 (567)
T 1dce_A           46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW  125 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence            66699999999999999999999999999987632  1345568999999999999999999999999999999986568


Q ss_pred             HHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHH
Q 045108          228 LNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRF  307 (425)
Q Consensus       228 ~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~  307 (425)
                      ++|+++++++++.||+|+|||+||++++..+..                   .+++|+++++++|+.+|+|+|+|+||++
T Consensus       126 ~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~-------------------~~~~el~~~~~~I~~~p~n~saW~~r~~  186 (567)
T 1dce_A          126 ARELELCARFLEADERNFHCWDYRRFVAAQAAV-------------------APAEELAFTDSLITRNFSNYSSWHYRSC  186 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC-------------------CHHHHHHHHHTTTTTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccccccHHHHHHHHHHHcCC-------------------ChHHHHHHHHHHHHHCCCCccHHHHHHH
Confidence            999999999999999999999999999988521                   2689999999999999999999999999


Q ss_pred             HHHHHHHHHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHHHhhhccCCCCcchhHHHhHHHHHHHHHHHhhhhc
Q 045108          308 LSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQIP  382 (425)
Q Consensus       308 Ll~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv~~~~~~~p~d~~~~~~~qs~~~~~y~~WL~~~~~  382 (425)
                      ++..+...     .+...    ...+   ....+++|++++..|++++|+|++         +|.|++||+.+..
T Consensus       187 ll~~l~~~-----~~~~~----~~~~---~~~~~~eel~~~~~ai~~~P~~~s---------aW~y~~~ll~~~~  240 (567)
T 1dce_A          187 LLPQLHPQ-----PDSGP----QGRL---PENVLLKELELVQNAFFTDPNDQS---------AWFYHRWLLGRAE  240 (567)
T ss_dssp             HHHHHSCC-----CCSSS----CCSS---CHHHHHHHHHHHHHHHHHCSSCSH---------HHHHHHHHHSCCC
T ss_pred             HHHhhccc-----ccccc----cccc---cHHHHHHHHHHHHHHHhhCCCCcc---------HHHHHHHHHhcCC
Confidence            99765321     00000    0001   235689999999999999999954         7889999997643

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.97  E-value=7.9e-31  Score=258.95  Aligned_cols=202  Identities=16%  Similarity=0.222  Sum_probs=167.4

Q ss_pred             CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhc
Q 045108          126 SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS  205 (425)
Q Consensus       126 npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~  205 (425)
                      .+++..+..+-+.++....   ..++.|.+|+.+|..||++||+|++|+.+|..++.      ..+++||.+++.++..+
T Consensus        29 ~~~y~~~~~~~~a~~~~~e---~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~------~~~~eeL~~~~~~L~~n   99 (306)
T 3dra_A           29 DEDYKQIMGLLLALMKAEE---YSERALHITELGINELASHYTIWIYRFNILKNLPN------RNLYDELDWCEEIALDN   99 (306)
T ss_dssp             CHHHHHHHHHHHHHHHTTC---CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTT------SCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHccc------ccHHHHHHHHHHHHHHC
Confidence            3455666777777777663   34789999999999999999999999999998872      13899999999999999


Q ss_pred             CCchhhhhHHHHHH----Hhhch-hhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHH
Q 045108          206 KMNYRAWNHRCWLV----SFMTR-EQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQV  280 (425)
Q Consensus       206 pkNY~AW~hR~wll----~~~~~-~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~  280 (425)
                      |+||.+|+||+|++    ..++. ..+.+|++++++++..||+|+++|+||++++..+..-             .     
T Consensus       100 Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~-------------~-----  161 (306)
T 3dra_A          100 EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLH-------------N-----  161 (306)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCT-------------T-----
T ss_pred             cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc-------------C-----
Confidence            99999999999999    44421 2478999999999999999999999999999886210             0     


Q ss_pred             HHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHHHhhhccCCCCcc
Q 045108          281 WKEELDWNESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANF  360 (425)
Q Consensus       281 ~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv~~~~~~~p~d~~  360 (425)
                      ..+|+++++++|+.+|+|+|+|+||++++..+..                    ......+++|+++++++++++|+|+|
T Consensus       162 ~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~--------------------~~~~~~~~eEl~~~~~aI~~~p~n~S  221 (306)
T 3dra_A          162 DAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKH--------------------LATDNTIDEELNYVKDKIVKCPQNPS  221 (306)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGG--------------------GCCHHHHHHHHHHHHHHHHHCSSCHH
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc--------------------cchhhhHHHHHHHHHHHHHhCCCCcc
Confidence            2489999999999999999999999999865311                    01235689999999999999999944


Q ss_pred             hhHHHhHHHHHHHHHHHhhhhcc
Q 045108          361 EDFQAQAIHSAAYMLWLTKQIPE  383 (425)
Q Consensus       361 ~~~~~qs~~~~~y~~WL~~~~~~  383 (425)
                               +|.|+.||+.....
T Consensus       222 ---------aW~y~~~ll~~~~~  235 (306)
T 3dra_A          222 ---------TWNYLLGIHERFDR  235 (306)
T ss_dssp             ---------HHHHHHHHHHHTTC
T ss_pred             ---------HHHHHHHHHHhcCC
Confidence                     78899999976543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.94  E-value=1.4e-25  Score=227.53  Aligned_cols=273  Identities=19%  Similarity=0.261  Sum_probs=205.9

Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHH
Q 045108           72 GISTQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMD  151 (425)
Q Consensus        72 gi~~~~l~~ly~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~  151 (425)
                      ++....+.+-|..+...+..++..             ....++++..+..+|.+||+++++|++|+.++...+  .++++
T Consensus        86 ~~~ai~~~p~~~~a~~~lg~~~~~-------------~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g--~d~~e  150 (382)
T 2h6f_A           86 PVVQIIYSDKFRDVYDYFRAVLQR-------------DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ--KDLHE  150 (382)
T ss_dssp             CSSEECCCHHHHHHHHHHHHHHHH-------------TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CCHHH
T ss_pred             cchhhhCChhhHHHHHHHHHHHHH-------------CCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcc--cCHHH
Confidence            344444455566665444443331             234689999999999999999999999999999884  24999


Q ss_pred             HHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHH
Q 045108          152 ELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNEL  231 (425)
Q Consensus       152 EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL  231 (425)
                      ++.+++.+|..+|+++.+|+||++++..++.        +.+++.++.++++.+|+|+++|.+|+|++..++.  +++++
T Consensus       151 Al~~~~~al~l~P~~~~a~~~~g~~~~~~g~--------~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~--~~eAl  220 (382)
T 2h6f_A          151 EMNYITAIIEEQPKNYQVWHHRRVLVEWLRD--------PSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL--WDNEL  220 (382)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--CTTHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC--hHHHH
Confidence            9999999999999999999999999999876        5789999999999999999999999999999886  68999


Q ss_pred             HHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q 045108          232 KQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLY  311 (425)
Q Consensus       232 ~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~  311 (425)
                      ++++++|..||+|.++|++|..++..+.+.            .  ...++..|++++.++|..+|+|.++|+++++++..
T Consensus       221 ~~~~~al~l~P~~~~a~~~lg~~l~~l~~~------------~--~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~  286 (382)
T 2h6f_A          221 QYVDQLLKEDVRNNSVWNQRYFVISNTTGY------------N--DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD  286 (382)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCS------------C--SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhcCc------------c--hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHc
Confidence            999999999999999999999999875331            0  13457888999999999999999999999888753


Q ss_pred             HHHHHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHHHhhhccCCCCcchhHHHhHHHHHHHHHHHhhhhccccc----c
Q 045108          312 LIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQIPEYQG----I  387 (425)
Q Consensus       312 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv~~~~~~~p~d~~~~~~~qs~~~~~y~~WL~~~~~~~~~----~  387 (425)
                      .       +             ....    .+-++.+..+ ..+|++..            .+..|.+.+.+. |    -
T Consensus       287 ~-------g-------------~~~~----~~a~~~~~~~-~~~p~~~~------------al~~La~~~~~~-~~~~~~  328 (382)
T 2h6f_A          287 R-------G-------------LSKY----PNLLNQLLDL-QPSHSSPY------------LIAFLVDIYEDM-LENQCD  328 (382)
T ss_dssp             T-------C-------------GGGC----HHHHHHHHHH-TTTCCCHH------------HHHHHHHHHHHH-HHTTCS
T ss_pred             c-------C-------------ccch----HHHHHHHHHh-ccCCCCHH------------HHHHHHHHHHHH-hccccc
Confidence            1       0             0001    1123334444 56776521            222333332221 1    0


Q ss_pred             hhhhhhhcchhhHHHHH-hhhCCCccchhhhhhccC
Q 045108          388 NIQEKLQAGAGDLMRML-KRSCPDRSSLWDYLVGYH  422 (425)
Q Consensus       388 ~~~~~~~~~~~~~~~~l-~~~~p~r~~~w~~~~~~~  422 (425)
                      +..+.. ..+..+...+ .+.||+|.+||.++.+.+
T Consensus       329 ~~~~~~-~~A~~~~~~l~~~~DP~r~~~w~~~~~~l  363 (382)
T 2h6f_A          329 NKEDIL-NKALELCEILAKEKDTIRKEYWRYIGRSL  363 (382)
T ss_dssp             SHHHHH-HHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             chHHHH-HHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            001111 2477888888 699999999999998654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.80  E-value=4.2e-19  Score=179.93  Aligned_cols=199  Identities=15%  Similarity=0.309  Sum_probs=172.6

Q ss_pred             HHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHH
Q 045108          121 ALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEK  200 (425)
Q Consensus       121 ~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~  200 (425)
                      ++|.++|++..+|++++.++...+   .+++++..++.+|..+|+++++|++|+.++..++.       .+++++.++.+
T Consensus        88 ~ai~~~p~~~~a~~~lg~~~~~~g---~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~-------d~~eAl~~~~~  157 (382)
T 2h6f_A           88 VQIIYSDKFRDVYDYFRAVLQRDE---RSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK-------DLHEEMNYITA  157 (382)
T ss_dssp             SEECCCHHHHHHHHHHHHHHHHTC---CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------CHHHHHHHHHH
T ss_pred             hhhhCChhhHHHHHHHHHHHHHCC---ChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHccc-------CHHHHHHHHHH
Confidence            457899999999999999998874   68999999999999999999999999999998763       16899999999


Q ss_pred             HHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHH
Q 045108          201 IAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQV  280 (425)
Q Consensus       201 ~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~  280 (425)
                      +++.+|+|+.+|+||++++..++.  +.+++..+++.+..||+|.++|.+|.+++..+ +                   .
T Consensus       158 al~l~P~~~~a~~~~g~~~~~~g~--~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~-g-------------------~  215 (382)
T 2h6f_A          158 IIEEQPKNYQVWHHRRVLVEWLRD--PSQELEFIADILNQDAKNYHAWQHRQWVIQEF-K-------------------L  215 (382)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTC--CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-T-------------------C
T ss_pred             HHHHCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc-C-------------------C
Confidence            999999999999999999999876  68999999999999999999999999999875 2                   1


Q ss_pred             HHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHHHhhhccCCCCcc
Q 045108          281 WKEELDWNESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANF  360 (425)
Q Consensus       281 ~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv~~~~~~~p~d~~  360 (425)
                      +++++.+++++|..+|+|.++|++|..++..+.+      .           .   ....+..|++.++.++..+|++.+
T Consensus       216 ~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~------~-----------~---~eA~~~~el~~~~~Al~l~P~~~~  275 (382)
T 2h6f_A          216 WDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG------Y-----------N---DRAVLEREVQYTLEMIKLVPHNES  275 (382)
T ss_dssp             CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------S-----------C---SHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC------c-----------c---hHHHHHHHHHHHHHHHHHCCCCHH
Confidence            4678999999999999999999999887754211      0           0   123478889999999999998733


Q ss_pred             hhHHHhHHHHHHHHHHHhhh
Q 045108          361 EDFQAQAIHSAAYMLWLTKQ  380 (425)
Q Consensus       361 ~~~~~qs~~~~~y~~WL~~~  380 (425)
                               +|.|+.|+...
T Consensus       276 ---------a~~~l~~ll~~  286 (382)
T 2h6f_A          276 ---------AWNYLKGILQD  286 (382)
T ss_dssp             ---------HHHHHHHHHTT
T ss_pred             ---------HHHHHHHHHHc
Confidence                     68899998865

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.12  E-value=1.2e-08  Score=93.61  Aligned_cols=172  Identities=7%  Similarity=-0.078  Sum_probs=145.6

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccch---hH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCST---LQ  188 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~---~~  188 (425)
                      .++++.....+|..+|++..+|..+..++...+   .+++.+..+..++..+|++..+|..+..++.........   ..
T Consensus        21 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~   97 (217)
T 2pl2_A           21 YDAALTLFERALKENPQDPEALYWLARTQLKLG---LVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGK   97 (217)
T ss_dssp             HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccc
Confidence            478999999999999999999999999998874   789999999999999999999999999998877110000   00


Q ss_pred             HhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCC
Q 045108          189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDN  268 (425)
Q Consensus       189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~  268 (425)
                      ..+++.+..+.++++.+|.+..+|..++.++...+.  +++.+..+++.+..+ .+..+|..+..++... +        
T Consensus        98 g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~-g--------  165 (217)
T 2pl2_A           98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE--RDKAEASLKQALALE-DTPEIRSALAELYLSM-G--------  165 (217)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH-T--------
T ss_pred             cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcc-cchHHHHHHHHHHHHc-C--------
Confidence            236889999999999999999999999999988876  789999999999999 8888998888877664 2        


Q ss_pred             CCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 045108          269 NSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLS  309 (425)
Q Consensus       269 ~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll  309 (425)
                                 -+++.+...++++..+|++..+|..+-.+.
T Consensus       166 -----------~~~~A~~~~~~al~~~P~~~~~~~~la~~~  195 (217)
T 2pl2_A          166 -----------RLDEALAQYAKALEQAPKDLDLRVRYASAL  195 (217)
T ss_dssp             -----------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             -----------CHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence                       267778889999999999999988765544

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.12  E-value=5.4e-09  Score=91.93  Aligned_cols=154  Identities=6%  Similarity=-0.050  Sum_probs=137.7

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      -+++++....+|.++|++..+|..+..+....+   .+++.+..+..++..+|++..+|.....+......        +
T Consensus        21 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~   89 (184)
T 3vtx_A           21 FDGAIRAYKKVLKADPNNVETLLKLGKTYMDIG---LPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDE--------K   89 (184)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCC--------H
Confidence            478999999999999999999999999998874   78999999999999999999999998888776654        5


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCC
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSS  271 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~  271 (425)
                      ...+..+.++++.+|.+..+|..++.+...++.  +++.++.+++.++.+|.|..+|..+..+...+ +           
T Consensus        90 ~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~-g-----------  155 (184)
T 3vtx_A           90 QAAIDALQRAIALNTVYADAYYKLGLVYDSMGE--HDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK-G-----------  155 (184)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-T-----------
T ss_pred             HHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC--chhHHHHHHHHHHhcchhhhHHHHHHHHHHHC-C-----------
Confidence            788889999999999999999999999988776  78999999999999999999999999888764 2           


Q ss_pred             CchhhhhHHHHHHHHHHHHHHhhcCCC
Q 045108          272 GYFVETYQVWKEELDWNESLIKRYVGR  298 (425)
Q Consensus       272 ~~~~~~~~~~~~EL~~~~~~I~~~p~n  298 (425)
                              -+++.+.+.+++|+.+|.|
T Consensus       156 --------~~~~A~~~~~~al~~~p~~  174 (184)
T 3vtx_A          156 --------LRDEAVKYFKKALEKEEKK  174 (184)
T ss_dssp             --------CHHHHHHHHHHHHHTTHHH
T ss_pred             --------CHHHHHHHHHHHHhCCccC
Confidence                    2677888999999999975

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.95  E-value=9.4e-09  Score=86.71  Aligned_cols=121  Identities=8%  Similarity=0.041  Sum_probs=108.1

Q ss_pred             HHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHH
Q 045108          121 ALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEK  200 (425)
Q Consensus       121 ~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~  200 (425)
                      .+.-+||+...+++-|+..+...   +.+++++...+.++..+|+++.+|..+..++.+++.        +.+.+..+.+
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~   72 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKK---GDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME--------FQRALDDCDT   72 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhcc--------HHHHHHHHHH
Confidence            34568999999999999988877   489999999999999999999999999999998876        6899999999


Q ss_pred             HHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 045108          201 IAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRL  254 (425)
Q Consensus       201 ~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~l  254 (425)
                      +++.+|.+..+|..++.+...++.  +++.++.+++.++.+|.|..++.....+
T Consensus        73 al~~~p~~~~a~~~lg~~~~~~~~--~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           73 CIRLDSKFIKGYIRKAACLVAMRE--WSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHhhhhhhHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            999999999999999999988876  7899999999999999999988765543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.85  E-value=3e-07  Score=83.64  Aligned_cols=181  Identities=6%  Similarity=-0.042  Sum_probs=141.2

Q ss_pred             hHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108          112 AIEVMIHSKALLLLSC-DFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (425)
Q Consensus       112 ~~~~L~~t~~lLl~np-e~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~  190 (425)
                      .++++.....++.++| .+..+|..+..+....+   .+++++..+..++..+|++..+|..+..+....+.        
T Consensus        23 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~--------   91 (228)
T 4i17_A           23 YAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIK---KYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKN--------   91 (228)
T ss_dssp             HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTC--------
T ss_pred             HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhh---cHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHccc--------
Confidence            4789999999999999 99999999999888874   79999999999999999999999999999988765        


Q ss_pred             HHHHHHHHHHHHHhcCCch-------hhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCC--ChhHHHHHHHHHHHhhcc
Q 045108          191 IERESELVEKIAERSKMNY-------RAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVA--DNSCFHYHRRLMIWNLEG  261 (425)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY-------~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~--N~SaW~yR~~ll~~l~~~  261 (425)
                      +.+.+..+.++++.+|.|.       .+|..++.+....+.  +++.++.+.+.+..+|.  +..+|..+..+....-..
T Consensus        92 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A           92 NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN--IEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc--HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999       557777777766654  78999999999999999  779998888776543111


Q ss_pred             c---ccc-CCCCCC---CchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 045108          262 F---CHI-QDNNSS---GYFVETYQVWKEELDWNESLIKRYVGREALWLHR  305 (425)
Q Consensus       262 ~---~~~-~~~~~~---~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yr  305 (425)
                      .   ... ......   +........+++.+.+..+++..+|+|..+....
T Consensus       170 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l  220 (228)
T 4i17_A          170 VLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQ  220 (228)
T ss_dssp             HHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence            0   000 000000   0001123456788899999999999998776554

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.85  E-value=3.1e-07  Score=80.45  Aligned_cols=151  Identities=9%  Similarity=-0.067  Sum_probs=130.5

Q ss_pred             CccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcC
Q 045108          127 CDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK  206 (425)
Q Consensus       127 pe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p  206 (425)
                      ++..++|+..+.+....+   .+++++..+..+|..+|++..+|..+..+..+++.        +++.+..+.+++..+|
T Consensus         2 ge~~~iy~~lG~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--------~~~a~~~~~~~~~~~~   70 (184)
T 3vtx_A            2 GETTTIYMDIGDKKRTKG---DFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGL--------PNDAIESLKKFVVLDT   70 (184)
T ss_dssp             --CHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCC
T ss_pred             CcHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhcCc
Confidence            467889999999888774   89999999999999999999999999999888765        6889999999999999


Q ss_pred             CchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHH
Q 045108          207 MNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELD  286 (425)
Q Consensus       207 kNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~  286 (425)
                      .+..+|.....+....+.  +...+....+.+..+|.+..+|..+..+...+ +                   -+++.++
T Consensus        71 ~~~~~~~~~~~~~~~~~~--~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~-g-------------------~~~~A~~  128 (184)
T 3vtx_A           71 TSAEAYYILGSANFMIDE--KQAAIDALQRAIALNTVYADAYYKLGLVYDSM-G-------------------EHDKAIE  128 (184)
T ss_dssp             CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-T-------------------CHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCccchHHHHHHHHHHHHh-C-------------------CchhHHH
Confidence            999999999888877665  67889999999999999999999998887664 1                   2678889


Q ss_pred             HHHHHHhhcCCCccHHHHHHHHHH
Q 045108          287 WNESLIKRYVGREALWLHRRFLSL  310 (425)
Q Consensus       287 ~~~~~I~~~p~neSaW~yrr~Ll~  310 (425)
                      ..++.+..+|.+..+|+.+-.+..
T Consensus       129 ~~~~~l~~~p~~~~~~~~lg~~~~  152 (184)
T 3vtx_A          129 AYEKTISIKPGFIRAYQSIGLAYE  152 (184)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcchhhhHHHHHHHHHH
Confidence            999999999999999988755543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.84  E-value=1e-07  Score=103.86  Aligned_cols=153  Identities=12%  Similarity=-0.023  Sum_probs=108.0

Q ss_pred             hCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHh
Q 045108          125 LSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAER  204 (425)
Q Consensus       125 ~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~  204 (425)
                      -+|+|..+++..+.++...+   .+++++....++|..+|++..+|+.+..++.++++        +++.+....++++.
T Consensus         4 s~P~~a~al~nLG~~~~~~G---~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~--------~~eA~~~~~~Al~l   72 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQG---NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK--------LQEALMHYKEAIRI   72 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHh
Confidence            35777777777777777663   67777777777777777777777777777776654        56777777777777


Q ss_pred             cCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHH
Q 045108          205 SKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEE  284 (425)
Q Consensus       205 ~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~E  284 (425)
                      +|.+..+|..++.++..++.  +++.++.+++.++.+|.+..+|..+..++..+ +                   .+++.
T Consensus        73 ~P~~~~a~~nLg~~l~~~g~--~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~-g-------------------~~~eA  130 (723)
T 4gyw_A           73 SPTFADAYSNMGNTLKEMQD--VQGALQCYTRAIQINPAFADAHSNLASIHKDS-G-------------------NIPEA  130 (723)
T ss_dssp             CTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-T-------------------CHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-------------------CHHHH
Confidence            77777777777777776665  66777777777777777777777777666553 1                   15566


Q ss_pred             HHHHHHHHhhcCCCccHHHHHHHHHH
Q 045108          285 LDWNESLIKRYVGREALWLHRRFLSL  310 (425)
Q Consensus       285 L~~~~~~I~~~p~neSaW~yrr~Ll~  310 (425)
                      +++.+++|+.+|++..+|+.+-.++.
T Consensus       131 i~~~~~Al~l~P~~~~a~~~L~~~l~  156 (723)
T 4gyw_A          131 IASYRTALKLKPDFPDAYCNLAHCLQ  156 (723)
T ss_dssp             HHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCChHHHhhhhhHHH
Confidence            77777777777777777776655443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.83  E-value=4e-07  Score=83.29  Aligned_cols=149  Identities=6%  Similarity=-0.127  Sum_probs=127.7

Q ss_pred             CccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcC
Q 045108          127 CDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK  206 (425)
Q Consensus       127 pe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p  206 (425)
                      |.+..+|..+..++...+   .+++.+..+..++..+|++..+|..+..++.+.+.        +.+.+..+.++++.+|
T Consensus         2 p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~al~~~P   70 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALG---RYDAALTLFERALKENPQDPEALYWLARTQLKLGL--------VNPALENGKTLVARTP   70 (217)
T ss_dssp             --CCHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCT
T ss_pred             CCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCC
Confidence            778889999998888774   78999999999999999999999999999988765        6889999999999999


Q ss_pred             CchhhhhHHHHHHHhh-----------chhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchh
Q 045108          207 MNYRAWNHRCWLVSFM-----------TREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFV  275 (425)
Q Consensus       207 kNY~AW~hR~wll~~~-----------~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~  275 (425)
                      .+..+|.....++...           +.  +++.+..+.+.+..+|.+..+|..+..++... +               
T Consensus        71 ~~~~a~~~lg~~~~~~~~~~~~~~~~~g~--~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~-g---------------  132 (217)
T 2pl2_A           71 RYLGGYMVLSEAYVALYRQAEDRERGKGY--LEQALSVLKDAERVNPRYAPLHLQRGLVYALL-G---------------  132 (217)
T ss_dssp             TCHHHHHHHHHHHHHHHHTCSSHHHHHHH--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-T---------------
T ss_pred             CcHHHHHHHHHHHHHhhhhhhhhcccccC--HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-C---------------
Confidence            9999999999998877           54  78899999999999999999999998887663 1               


Q ss_pred             hhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 045108          276 ETYQVWKEELDWNESLIKRYVGREALWLHRRFLS  309 (425)
Q Consensus       276 ~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll  309 (425)
                          -+++.+...++++..+ .+..+|..+-.+.
T Consensus       133 ----~~~~A~~~~~~al~~~-~~~~~~~~la~~~  161 (217)
T 2pl2_A          133 ----ERDKAEASLKQALALE-DTPEIRSALAELY  161 (217)
T ss_dssp             ----CHHHHHHHHHHHHHHC-CCHHHHHHHHHHH
T ss_pred             ----ChHHHHHHHHHHHhcc-cchHHHHHHHHHH
Confidence                2577888889999999 7777777654444

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.81  E-value=2.7e-07  Score=95.05  Aligned_cols=180  Identities=10%  Similarity=0.038  Sum_probs=148.5

Q ss_pred             cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhcc-chhH
Q 045108          110 TVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNC-STLQ  188 (425)
Q Consensus       110 ~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~-~~~~  188 (425)
                      .+.+++++....+|.++|++..+|+....++...+   .+++++..+..++..+|+ +.+|.....++..+.... ....
T Consensus       117 ~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~  192 (474)
T 4abn_A          117 DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKG---DVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHS  192 (474)
T ss_dssp             SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhh
Confidence            34488999999999999999999999999988874   799999999999999999 688888888877650000 0001


Q ss_pred             HhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhh----c--hhhHHHHHHHHHHHHhhcC---CChhHHHHHHHHHHHhh
Q 045108          189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFM----T--REQVLNELKQSRNWSGLHV---ADNSCFHYHRRLMIWNL  259 (425)
Q Consensus       189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~----~--~~~~~~EL~~~~~~i~~d~---~N~SaW~yR~~ll~~l~  259 (425)
                      ..+++.+..+.++++.+|.+..+|.....++...    +  ...+++.++.+.+.+..+|   .+..+|..+..++..+ 
T Consensus       193 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~-  271 (474)
T 4abn_A          193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYE-  271 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHT-
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHc-
Confidence            2378899999999999999999999999998776    1  1247899999999999999   8999999998887764 


Q ss_pred             ccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 045108          260 EGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLYLI  313 (425)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~~~  313 (425)
                      +                   -+++.+.+..+++..+|.+..+|..+..++..+.
T Consensus       272 g-------------------~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg  306 (474)
T 4abn_A          272 E-------------------SYGEALEGFSQAAALDPAWPEPQQREQQLLEFLS  306 (474)
T ss_dssp             T-------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             C-------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            2                   2677888999999999999999998877766543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.79  E-value=2.8e-07  Score=100.54  Aligned_cols=134  Identities=10%  Similarity=0.028  Sum_probs=125.4

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .+++++...++|.++|++..+|+.++.++...+   .+++++.....+|..+|++..+|+.+..++..+++        +
T Consensus        25 ~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g---~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~--------~   93 (723)
T 4gyw_A           25 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG---KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD--------V   93 (723)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------H
Confidence            478999999999999999999999999999884   79999999999999999999999999999988775        6


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWN  258 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l  258 (425)
                      ++.++.+.++++.+|.+..+|...+.++...+.  +++.++.+++.++.+|.+..+|..+..++..+
T Consensus        94 ~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~--~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~  158 (723)
T 4gyw_A           94 QGALQCYTRAIQINPAFADAHSNLASIHKDSGN--IPEAIASYRTALKLKPDFPDAYCNLAHCLQIV  158 (723)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHhhhhhHHHhc
Confidence            899999999999999999999999999998876  78999999999999999999999999988775

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.77  E-value=4.2e-08  Score=105.94  Aligned_cols=165  Identities=4%  Similarity=-0.209  Sum_probs=146.5

Q ss_pred             chHHHHHHHHHHH--------HhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhh
Q 045108          111 VAIEVMIHSKALL--------LLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISR  182 (425)
Q Consensus       111 ~~~~~L~~t~~lL--------l~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~  182 (425)
                      ..+++++....++        ..+|++..+|..+..++...+   .+++++..++.++..+|++..+|.++..++...++
T Consensus       406 ~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~  482 (681)
T 2pzi_A          406 QPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLG---DVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGD  482 (681)
T ss_dssp             CHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcC---CHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCC
Confidence            3578999999999        999999999999999888774   78999999999999999999999999999888765


Q ss_pred             ccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccc
Q 045108          183 NCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGF  262 (425)
Q Consensus       183 ~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~  262 (425)
                              +++.+..+.++++.+|.+..+|..+..+...++.  +++ ++.+++.++.+|.|..+|..+..++..+ +  
T Consensus       483 --------~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~--~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~-g--  548 (681)
T 2pzi_A          483 --------YDSATKHFTEVLDTFPGELAPKLALAATAELAGN--TDE-HKFYQTVWSTNDGVISAAFGLARARSAE-G--  548 (681)
T ss_dssp             --------HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC--CCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHT-T--
T ss_pred             --------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC--hHH-HHHHHHHHHhCCchHHHHHHHHHHHHHc-C--
Confidence                    6899999999999999999999999999988876  567 9999999999999999999999887764 2  


Q ss_pred             cccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 045108          263 CHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLS  309 (425)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll  309 (425)
                                       -+++.+...++++..+|++..+|..+..++
T Consensus       549 -----------------~~~~A~~~~~~al~l~P~~~~a~~~~~~~~  578 (681)
T 2pzi_A          549 -----------------DRVGAVRTLDEVPPTSRHFTTARLTSAVTL  578 (681)
T ss_dssp             -----------------CHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred             -----------------CHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence                             267888999999999999999998875544

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.72  E-value=3.7e-07  Score=82.93  Aligned_cols=157  Identities=9%  Similarity=-0.028  Sum_probs=119.9

Q ss_pred             chHHHHHHHHHHHHhCCccHHHHHH----------------HHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHH
Q 045108          111 VAIEVMIHSKALLLLSCDFATAWNS----------------RKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRR  174 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~~TaWn~----------------Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRr  174 (425)
                      ..++++.....++.++|++..+|..                +..++...   ..+++++..+..++..+|++..+|..+.
T Consensus        19 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~lg   95 (208)
T 3urz_A           19 QNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN---RNYDKAYLFYKELLQKAPNNVDCLEACA   95 (208)
T ss_dssp             CHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            3578999999999999999999999                88888877   4799999999999999999999999999


Q ss_pred             HHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 045108          175 WVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRL  254 (425)
Q Consensus       175 wll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~l  254 (425)
                      .++...+.        +++.+..+.++++.+|.|..+|..++.+....+............+.+..++ +..+|.++...
T Consensus        96 ~~~~~~g~--------~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~  166 (208)
T 3urz_A           96 EMQVCRGQ--------EKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRDGLS  166 (208)
T ss_dssp             HHHHHHTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHHHHH
T ss_pred             HHHHHcCC--------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHH
Confidence            99888765        6899999999999999999999999988765543223333444444443222 22244444333


Q ss_pred             HHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCc
Q 045108          255 MIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGRE  299 (425)
Q Consensus       255 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~ne  299 (425)
                      ... .                   .-+++.+.+.+++|..+|+++
T Consensus       167 ~~~-~-------------------~~~~~A~~~~~~al~l~P~~~  191 (208)
T 3urz_A          167 KLF-T-------------------TRYEKARNSLQKVILRFPSTE  191 (208)
T ss_dssp             HHH-H-------------------HTHHHHHHHHHHHTTTSCCHH
T ss_pred             HHH-c-------------------cCHHHHHHHHHHHHHhCCCHH
Confidence            222 1                   136788999999999999854

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.71  E-value=8.3e-07  Score=87.05  Aligned_cols=132  Identities=11%  Similarity=0.004  Sum_probs=93.3

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++++.....++.++|++..+|..+..++...+   .+++.+..+..++..+|++..+|.....+....+.        +
T Consensus       185 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--------~  253 (388)
T 1w3b_A          185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEAR---IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL--------I  253 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCC--------H
Confidence            467788888888888888888888887777663   56777777777778888887777777766665543        4


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMI  256 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~  256 (425)
                      ++.+..+.++++.+|.+..+|.....++...+.  +++.++.+++.+..+|.+..+|..+..+..
T Consensus       254 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  316 (388)
T 1w3b_A          254 DLAIDTYRRAIELQPHFPDAYCNLANALKEKGS--VAEAEDCYNTALRLCPTHADSLNNLANIKR  316 (388)
T ss_dssp             HHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence            666667777777777777777766666665554  556666667777777777666666655543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.69  E-value=1.1e-06  Score=86.14  Aligned_cols=165  Identities=10%  Similarity=0.031  Sum_probs=107.2

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++++.....++.++|++..+|+.+..++...+   .+++++..+..++..+|+++.+|.....++..++.        +
T Consensus        83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--------~  151 (388)
T 1w3b_A           83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAG---DMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGR--------L  151 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHS---CSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSC--------H
T ss_pred             HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccC--------H
Confidence            455666666666666666666666666655553   45666666666666666666666666655554433        4


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCC
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSS  271 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~  271 (425)
                      ++.+.+..++++.+|.+..+|.....+....+.  +...+...++.+..+|.+..+|..+..+.... +           
T Consensus       152 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~-----------  217 (388)
T 1w3b_A          152 EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE--IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA-R-----------  217 (388)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-T-----------
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-C-----------
Confidence            666677777777777777777777666665554  56667777777777777777777666555432 1           


Q ss_pred             CchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 045108          272 GYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLS  309 (425)
Q Consensus       272 ~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll  309 (425)
                              .+++.+....+.+..+|.+..+|..+-.+.
T Consensus       218 --------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  247 (388)
T 1w3b_A          218 --------IFDRAVAAYLRALSLSPNHAVVHGNLACVY  247 (388)
T ss_dssp             --------CTTHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             --------CHHHHHHHHHHHHhhCcCCHHHHHHHHHHH
Confidence                    134566777788888888877777654443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.69  E-value=1.2e-06  Score=79.13  Aligned_cols=164  Identities=10%  Similarity=0.017  Sum_probs=136.3

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++++.....++..+|++..+|.....+....   ..+++.+.++..++..+|++..+|.....+....+.        +
T Consensus        73 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~  141 (243)
T 2q7f_A           73 LERALAFYDKALELDSSAATAYYGAGNVYVVK---EMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQ--------P  141 (243)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSC--------H
T ss_pred             HHHHHHHHHHHHHcCCcchHHHHHHHHHHHHh---ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc--------H
Confidence            57888999999999999999999988888776   478999999999999999999999888887776554        6


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCC
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSS  271 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~  271 (425)
                      ++.+.++.++++.+|.+..+|.....+....+.  +++.+..+.+.+..+|.+..+|..+..+.... +           
T Consensus       142 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~-----------  207 (243)
T 2q7f_A          142 KLALPYLQRAVELNENDTEARFQFGMCLANEGM--LDEALSQFAAVTEQDPGHADAFYNAGVTYAYK-E-----------  207 (243)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-T-----------
T ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-c-----------
Confidence            888899999999999999999888888877665  67888999999999999999888887776653 1           


Q ss_pred             CchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 045108          272 GYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFL  308 (425)
Q Consensus       272 ~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~L  308 (425)
                              -+++.+.+..+++..+|++..+|..+..+
T Consensus       208 --------~~~~A~~~~~~~~~~~p~~~~~~~~~~~l  236 (243)
T 2q7f_A          208 --------NREKALEMLDKAIDIQPDHMLALHAKKLL  236 (243)
T ss_dssp             --------CTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred             --------CHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence                    13566778888999999999998876443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.68  E-value=3e-06  Score=79.84  Aligned_cols=209  Identities=11%  Similarity=-0.033  Sum_probs=128.8

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++++.....++..+|++..+|.....+....+  ..+++.+..+..++..+|++..+|.....++...+.        +
T Consensus        72 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--------~  141 (330)
T 3hym_B           72 ANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVG--HKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE--------H  141 (330)
T ss_dssp             HHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSC--SCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTC--------H
T ss_pred             HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccC--------H
Confidence            466777777777777777777777776666552  256777777777777777777777777766665543        4


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccc---------
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGF---------  262 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~---------  262 (425)
                      ++.+..+.++++.+|.+..+|.....+....+.  +++.+..+.+.+..+|.+..+|..+..+........         
T Consensus       142 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  219 (330)
T 3hym_B          142 DQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNN--SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDA  219 (330)
T ss_dssp             HHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            666666677777777766666666666655543  556666666777777766666666665544321000         


Q ss_pred             --cccC-CCC---CCCc--------hhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhccCcCCCCC
Q 045108          263 --CHIQ-DNN---SSGY--------FVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSK  328 (425)
Q Consensus       263 --~~~~-~~~---~~~~--------~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~~~~~~~~~~~~~s~~~~  328 (425)
                        .... .+.   ....        .-....-+++.+.+..+++..+|.+..+|..+..+.....        +      
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g--------~------  285 (330)
T 3hym_B          220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG--------N------  285 (330)
T ss_dssp             HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHT--------C------
T ss_pred             HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhc--------c------
Confidence              0000 000   0000        0000123577888999999999999999988755543311        0      


Q ss_pred             CCCCchhhHHHHHHHHHHHHHhhhccCCCC
Q 045108          329 PKASVDIDIDSLMDHELCLVHSCSTTIPDA  358 (425)
Q Consensus       329 ~~~~~~~~~~~~l~~E~~lv~~~~~~~p~d  358 (425)
                                  ..+=++..+.++..+|++
T Consensus       286 ------------~~~A~~~~~~al~~~p~~  303 (330)
T 3hym_B          286 ------------FENAVDYFHTALGLRRDD  303 (330)
T ss_dssp             ------------HHHHHHHHHTTTTTCSCC
T ss_pred             ------------HHHHHHHHHHHHccCCCc
Confidence                        123345577888899977

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.68  E-value=2.9e-06  Score=76.99  Aligned_cols=152  Identities=4%  Similarity=-0.130  Sum_probs=127.3

Q ss_pred             ccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCC-CchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcC
Q 045108          128 DFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSP-KSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK  206 (425)
Q Consensus       128 e~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~P-Ksy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p  206 (425)
                      .+..+|..++.+....   ..+++++..+..++..+| ++..+|..+..+...++.        +++.+..+.++++.+|
T Consensus         5 ~~~~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~al~~~p   73 (228)
T 4i17_A            5 TDPNQLKNEGNDALNA---KNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKK--------YKEAADYFDIAIKKNY   73 (228)
T ss_dssp             CCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTTC
T ss_pred             cCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhc--------HHHHHHHHHHHHHhCc
Confidence            3457888888888877   479999999999999999 999999999888887765        6899999999999999


Q ss_pred             CchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCh-------hHHHHHHHHHHHhhccccccCCCCCCCchhhhhH
Q 045108          207 MNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADN-------SCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQ  279 (425)
Q Consensus       207 kNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~-------SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~  279 (425)
                      .+..+|..++.+...++.  +.+.+..+++.+..+|.|.       .+|..+..+....                    .
T Consensus        74 ~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~--------------------~  131 (228)
T 4i17_A           74 NLANAYIGKSAAYRDMKN--NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQA--------------------G  131 (228)
T ss_dssp             SHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHT--------------------T
T ss_pred             chHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHh--------------------c
Confidence            999999999999988776  7899999999999999998       4455555554432                    1


Q ss_pred             HHHHHHHHHHHHHhhcCC--CccHHHHHHHHHHHH
Q 045108          280 VWKEELDWNESLIKRYVG--REALWLHRRFLSLYL  312 (425)
Q Consensus       280 ~~~~EL~~~~~~I~~~p~--neSaW~yrr~Ll~~~  312 (425)
                      -+++.+++..++|..+|.  +..+|..+..+....
T Consensus       132 ~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~  166 (228)
T 4i17_A          132 NIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNN  166 (228)
T ss_dssp             CHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence            267889999999999999  888988876665443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.67  E-value=1.2e-06  Score=84.90  Aligned_cols=162  Identities=9%  Similarity=-0.031  Sum_probs=103.3

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++++.....++..+|++..+|+....+....+   .+++++..+..++..+|++..+|.....++...+.        +
T Consensus        81 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--------~  149 (365)
T 4eqf_A           81 LPVTILFMEAAILQDPGDAEAWQFLGITQAENE---NEQAAIVALQRCLELQPNNLKALMALAVSYTNTSH--------Q  149 (365)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcccc--------H
Confidence            467888888888888888888888888887764   68888888888888888888888888877776654        4


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHH----------HHHHHhhchhhHHHHHHHHHHHHhhcCC--ChhHHHHHHHHHHHhh
Q 045108          192 ERESELVEKIAERSKMNYRAWNHR----------CWLVSFMTREQVLNELKQSRNWSGLHVA--DNSCFHYHRRLMIWNL  259 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR----------~wll~~~~~~~~~~EL~~~~~~i~~d~~--N~SaW~yR~~ll~~l~  259 (425)
                      ++.+.++.++++.+|.+..+|..+          ..+....  ..+.+.+..+.+.+..+|.  +..+|..+..+.... 
T Consensus       150 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~-  226 (365)
T 4eqf_A          150 QDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS--SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS-  226 (365)
T ss_dssp             HHHHHHHHHHHHHCHHHHCC-------------------CC--HHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhh--hhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC-
Confidence            566666666666666666665544          2222221  1355566666666666666  555555555444332 


Q ss_pred             ccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 045108          260 EGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRR  306 (425)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr  306 (425)
                      +                   -+++.+.+..+++..+|.+..+|+.+-
T Consensus       227 g-------------------~~~~A~~~~~~al~~~p~~~~~~~~l~  254 (365)
T 4eqf_A          227 G-------------------EFNRAIDAFNAALTVRPEDYSLWNRLG  254 (365)
T ss_dssp             T-------------------CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             C-------------------CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            1                   144555555666666666666555543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.65  E-value=7.7e-06  Score=77.02  Aligned_cols=134  Identities=10%  Similarity=-0.054  Sum_probs=119.0

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .+++++....++..+|.+..++.....++...   ..+++.+.++..++..+|++..+|.....+....+.       .+
T Consensus        38 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~  107 (330)
T 3hym_B           38 FKMCYKLTSVVMEKDPFHASCLPVHIGTLVEL---NKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGH-------KN  107 (330)
T ss_dssp             HHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCS-------CH
T ss_pred             HHHHHHHHHHHHHcCCCChhhHHHHHHHHHHh---hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhh-------hH
Confidence            47789999999999999999999888888776   478999999999999999999999999988887662       25


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIW  257 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~  257 (425)
                      ++.+.++.++++.+|.+..+|.....+....+.  +.+.+..+.+.+..+|.+..+|.++..+...
T Consensus       108 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  171 (330)
T 3hym_B          108 EHARRYLSKATTLEKTYGPAWIAYGHSFAVESE--HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL  171 (330)
T ss_dssp             HHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            788999999999999999999999999887775  7889999999999999999999998777654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.64  E-value=1.8e-07  Score=80.82  Aligned_cols=134  Identities=4%  Similarity=-0.108  Sum_probs=116.9

Q ss_pred             chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108          111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~  190 (425)
                      ..++++.....++..+|++..++.....+....   ..+++++..+..++..+|+++.+|..+..+....+.        
T Consensus        12 ~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~---~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~--------   80 (150)
T 4ga2_A           12 DVERYIASVQGSTPSPRQKSIKGFYFAKLYYEA---KEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN--------   80 (150)
T ss_dssp             HHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------
T ss_pred             hHHHHHHHHHHhcccCcccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc--------
Confidence            357788899999999999999999999888877   489999999999999999999999999999988765        


Q ss_pred             HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHH-HHHHHHHhhcCCChhHHHHHHHHHHH
Q 045108          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNEL-KQSRNWSGLHVADNSCFHYHRRLMIW  257 (425)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL-~~~~~~i~~d~~N~SaW~yR~~ll~~  257 (425)
                      +++.+....++++.+|.+..+|.....++...+.  ..+.. .++++.++.+|.|-.+|..+..|+..
T Consensus        81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~  146 (150)
T 4ga2_A           81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDV--TDGRAKYWVERAAKLFPGSPAVYKLKEQLLDC  146 (150)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS--SSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            6889999999999999999999999998887765  33444 45789999999999999988877654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.64  E-value=4.9e-06  Score=73.77  Aligned_cols=161  Identities=11%  Similarity=-0.038  Sum_probs=137.0

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHH-hhccchhHHh
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMI-SRNCSTLQWI  190 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l-~~~~~~~~~~  190 (425)
                      .++++.....++..+|++..+|.....+....+   .+++.+..+..++..+|.+..+|.....+.... +.        
T Consensus        24 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~--------   92 (225)
T 2vq2_A           24 YRQATASIEDALKSDPKNELAWLVRAEIYQYLK---VNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNR--------   92 (225)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCC--------
T ss_pred             HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCc--------
Confidence            478999999999999999999999999888774   789999999999999999999998888777665 43        


Q ss_pred             HHHHHHHHHHHHH--hcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCC
Q 045108          191 IERESELVEKIAE--RSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDN  268 (425)
Q Consensus       191 ~~~EL~~~~~~l~--~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~  268 (425)
                      +++.+.++.++++  .+|.+..+|.....+....+.  +++.+..+.+.+..+|.+..+|..+..+.... +        
T Consensus        93 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~--------  161 (225)
T 2vq2_A           93 PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ--FGLAEAYLKRSLAAQPQFPPAFKELARTKMLA-G--------  161 (225)
T ss_dssp             HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-T--------
T ss_pred             HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc-C--------
Confidence            6888999999999  778888999999988877765  78889999999999999999998887776653 1        


Q ss_pred             CCCCchhhhhHHHHHHHHHHHHHHhhcC-CCccHHHHH
Q 045108          269 NSSGYFVETYQVWKEELDWNESLIKRYV-GREALWLHR  305 (425)
Q Consensus       269 ~~~~~~~~~~~~~~~EL~~~~~~I~~~p-~neSaW~yr  305 (425)
                                 -+++.+.+..+.+..+| .+..+|...
T Consensus       162 -----------~~~~A~~~~~~~~~~~~~~~~~~~~~~  188 (225)
T 2vq2_A          162 -----------QLGDADYYFKKYQSRVEVLQADDLLLG  188 (225)
T ss_dssp             -----------CHHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred             -----------CHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence                       25677888889999999 888877543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.64  E-value=1.3e-06  Score=84.86  Aligned_cols=204  Identities=9%  Similarity=-0.020  Sum_probs=148.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCC----CCCCCCCccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHH
Q 045108           81 VYKAAKHAFISALRQYKTPGN----FSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLS  156 (425)
Q Consensus        81 ly~~A~~~f~~~l~~y~~~~~----~~~~~~~~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~  156 (425)
                      -|..|...|.+++........    ....-......++++.....++.++|++..+|+....++...+   .+++++..+
T Consensus        80 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~  156 (365)
T 4eqf_A           80 DLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS---HQQDACEAL  156 (365)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccc---cHHHHHHHH
Confidence            466777777776653211000    0000000123578999999999999999999999999988874   789999999


Q ss_pred             HHHHhhCCCchhhhhHHH---HHHHHHhhccchhHHhHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhchhhHHHHH
Q 045108          157 AVVLSHSPKSEQAWSHRR---WVINMISRNCSTLQWIIERESELVEKIAERSKM--NYRAWNHRCWLVSFMTREQVLNEL  231 (425)
Q Consensus       157 ~~lL~~~PKsy~~W~hRr---wll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pk--NY~AW~hR~wll~~~~~~~~~~EL  231 (425)
                      ..++..+|++..+|..+.   .+...+..... ....+.+.+.++.++++.+|.  +..+|.....+....+.  +.+.+
T Consensus       157 ~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~--~~~A~  233 (365)
T 4eqf_A          157 KNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPV-DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGE--FNRAI  233 (365)
T ss_dssp             HHHHHHCHHHHCC--------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTC--HHHHH
T ss_pred             HHHHHhCccchHHHhhhccchHHHHHHHHHHh-hhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCC--HHHHH
Confidence            999999999999988761   11111111000 013478899999999999999  88999999888877765  78999


Q ss_pred             HHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 045108          232 KQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSL  310 (425)
Q Consensus       232 ~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~  310 (425)
                      +.+.+.+..+|.+..+|..+..++... +                   -+++.+.+..+++..+|++..+|..+..+..
T Consensus       234 ~~~~~al~~~p~~~~~~~~l~~~~~~~-g-------------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  292 (365)
T 4eqf_A          234 DAFNAALTVRPEDYSLWNRLGATLANG-D-------------------RSEEAVEAYTRALEIQPGFIRSRYNLGISCI  292 (365)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHT-T-------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHc-C-------------------CHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence            999999999999999999988887663 1                   2677888889999999999888888755543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.63  E-value=3.6e-07  Score=76.79  Aligned_cols=121  Identities=9%  Similarity=-0.013  Sum_probs=104.0

Q ss_pred             HHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHH
Q 045108          158 VVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNW  237 (425)
Q Consensus       158 ~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~  237 (425)
                      .+..+||+...+|..+...+.+.+.        +++.+....++++.+|.+..+|..++.+...++.  +.+.++.+++.
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~--~~~A~~~~~~a   73 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGD--------YPTAMRHYNEAVKRDPENAILYSNRAACLTKLME--FQRALDDCDTC   73 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhcc--HHHHHHHHHHH
Confidence            4556899999999999988877654        7899999999999999999999999999998876  78999999999


Q ss_pred             HhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 045108          238 SGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFL  308 (425)
Q Consensus       238 i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~L  308 (425)
                      ++.+|.+..+|..+..++..+ +                   -+++.++...++|+.+|+|..++.....+
T Consensus        74 l~~~p~~~~a~~~lg~~~~~~-~-------------------~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           74 IRLDSKFIKGYIRKAACLVAM-R-------------------EWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHT-T-------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHhhhhhhHHHHHHHHHHHHC-C-------------------CHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            999999999999999888764 2                   26788899999999999999988765543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.62  E-value=5.8e-06  Score=78.50  Aligned_cols=165  Identities=9%  Similarity=-0.059  Sum_probs=137.5

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++++.....++..+|++..+|..+..+....+   .+++++..+..++..+|.+..+|.....+....+.        +
T Consensus        19 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~   87 (359)
T 3ieg_A           19 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMG---KSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGK--------L   87 (359)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------H
T ss_pred             HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCC--------h
Confidence            478999999999999999999999999888874   78999999999999999999999999888887765        6


Q ss_pred             HHHHHHHHHHHHhcC---CchhhhhHHH------------HHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 045108          192 ERESELVEKIAERSK---MNYRAWNHRC------------WLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMI  256 (425)
Q Consensus       192 ~~EL~~~~~~l~~~p---kNY~AW~hR~------------wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~  256 (425)
                      ++.+..+.++++.+|   .+..+|....            .+....+  .+...++.+++.+..+|.+..+|..+..+..
T Consensus        88 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (359)
T 3ieg_A           88 DEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA--DYTAAITFLDKILEVCVWDAELRELRAECFI  165 (359)
T ss_dssp             HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            889999999999999   8999887763            2332223  4788899999999999999999988887776


Q ss_pred             HhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 045108          257 WNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLS  309 (425)
Q Consensus       257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll  309 (425)
                      .. +                   -+++.+....+++..+|.+..+|..+-.+.
T Consensus       166 ~~-~-------------------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  198 (359)
T 3ieg_A          166 KE-G-------------------EPRKAISDLKAASKLKSDNTEAFYKISTLY  198 (359)
T ss_dssp             HT-T-------------------CHHHHHHHHHHHHTTCSCCHHHHHHHHHHH
T ss_pred             HC-C-------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            53 1                   156778888899999999998888765544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.60  E-value=3.8e-06  Score=86.42  Aligned_cols=173  Identities=12%  Similarity=0.033  Sum_probs=144.8

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccH-HHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPIL-MDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l-~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~  190 (425)
                      .++++.....++...|+...+|..++.++...+   .+ ++++..+..++..+|++..+|.....++...+.        
T Consensus        84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g---~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--------  152 (474)
T 4abn_A           84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTP---DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGD--------  152 (474)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSS---SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------
T ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--------
Confidence            456677777888889999999999999988774   78 999999999999999999999999999888765        


Q ss_pred             HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhh---------chhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhcc
Q 045108          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFM---------TREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEG  261 (425)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~---------~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~  261 (425)
                      +++.+.++.++++.+|. ..+|.....++..+         +  .+++.++.+++.+..+|.|..+|..+..++....-.
T Consensus       153 ~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~  229 (474)
T 4abn_A          153 VTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSR--HVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFN  229 (474)
T ss_dssp             HHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHH--HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhh--hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence            68999999999999998 69999999988776         4  478899999999999999999999999888664111


Q ss_pred             ccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcC---CCccHHHHHHHHHH
Q 045108          262 FCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYV---GREALWLHRRFLSL  310 (425)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p---~neSaW~yrr~Ll~  310 (425)
                      .         +  . ....+++.+.+..+++..+|   .+..+|+.+-.+..
T Consensus       230 ~---------~--~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~  269 (474)
T 4abn_A          230 T---------G--Q-NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHK  269 (474)
T ss_dssp             T---------T--C-CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHH
T ss_pred             h---------c--c-ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHH
Confidence            0         0  0 11347888999999999999   88888888755553

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.60  E-value=2.8e-06  Score=76.67  Aligned_cols=164  Identities=10%  Similarity=-0.018  Sum_probs=137.6

Q ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHH
Q 045108          113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIE  192 (425)
Q Consensus       113 ~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~  192 (425)
                      ++++.....++..+|++..+|..+..+....+   .+++.+..+..++..+|++..+|.....+....+.        ++
T Consensus        40 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------~~  108 (243)
T 2q7f_A           40 EKAAEAFTKAIEENKEDAIPYINFANLLSSVN---ELERALAFYDKALELDSSAATAYYGAGNVYVVKEM--------YK  108 (243)
T ss_dssp             --CCTTHHHHHTTCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcc--------HH
Confidence            45667778888899999999999999888774   78999999999999999999999998888877654        68


Q ss_pred             HHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCC
Q 045108          193 RESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSG  272 (425)
Q Consensus       193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~  272 (425)
                      +.+.++.++++.+|.+..+|.....+....+.  +++.+..+++.+..+|.+..+|..+..+.... +            
T Consensus       109 ~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~------------  173 (243)
T 2q7f_A          109 EAKDMFEKALRAGMENGDLFYMLGTVLVKLEQ--PKLALPYLQRAVELNENDTEARFQFGMCLANE-G------------  173 (243)
T ss_dssp             HHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-T------------
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc-C------------
Confidence            89999999999999999999999988877765  78899999999999999999998887776553 1            


Q ss_pred             chhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 045108          273 YFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLS  309 (425)
Q Consensus       273 ~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll  309 (425)
                             .+++.+.+..+++..+|.+..+|..+..+.
T Consensus       174 -------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  203 (243)
T 2q7f_A          174 -------MLDEALSQFAAVTEQDPGHADAFYNAGVTY  203 (243)
T ss_dssp             -------CCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             -------CHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence                   145667778888999999988887765444

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.57  E-value=2.4e-05  Score=74.21  Aligned_cols=172  Identities=13%  Similarity=0.014  Sum_probs=139.2

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCC---CchhhhhHHHHHHHHHhhcc----
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSP---KSEQAWSHRRWVINMISRNC----  184 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~P---Ksy~~W~hRrwll~~l~~~~----  184 (425)
                      .++++.....++..+|++..+|.....+....+   .+++++..+..++..+|   ++..+|.....+........    
T Consensus        53 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  129 (359)
T 3ieg_A           53 SKAALPDLTKVIALKMDFTAARLQRGHLLLKQG---KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALD  129 (359)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            478899999999999999999999999888874   78999999999999999   99999877643211000000    


Q ss_pred             chhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccc
Q 045108          185 STLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCH  264 (425)
Q Consensus       185 ~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~  264 (425)
                      -.....+.+.+.++.++++.+|.+..+|.....+....+.  +...+..+.+.+..+|.+..+|..+..+.... +    
T Consensus       130 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~----  202 (359)
T 3ieg_A          130 AFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGE--PRKAISDLKAASKLKSDNTEAFYKISTLYYQL-G----  202 (359)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHH-T----
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C----
Confidence            0001237889999999999999999999999999888775  78899999999999999999999888777653 1    


Q ss_pred             cCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 045108          265 IQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFL  308 (425)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~L  308 (425)
                                     -+++.+.+..+++..+|.+..+|.+...+
T Consensus       203 ---------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  231 (359)
T 3ieg_A          203 ---------------DHELSLSEVRECLKLDQDHKRCFAHYKQV  231 (359)
T ss_dssp             ---------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ---------------CHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence                           15677888889999999999999876543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.55  E-value=9.7e-06  Score=71.82  Aligned_cols=161  Identities=7%  Similarity=-0.051  Sum_probs=132.7

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHcc-CCcccHHHHHHHHHHHHh--hCCCchhhhhHHHHHHHHHhhccchhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNK-QLLPILMDELRLSAVVLS--HSPKSEQAWSHRRWVINMISRNCSTLQ  188 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~-~~~~~l~~EL~~~~~lL~--~~PKsy~~W~hRrwll~~l~~~~~~~~  188 (425)
                      .+++++....++..+|++..+|.....++... +   .+++.+..+..++.  .+|....+|.....+....+.      
T Consensus        58 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------  128 (225)
T 2vq2_A           58 NDKAQESFRQALSIKPDSAEINNNYGWFLCGRLN---RPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ------  128 (225)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC------
T ss_pred             hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC------
Confidence            47899999999999999999999999888776 5   78999999999999  777778999888888877654      


Q ss_pred             HhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcC-CChhHHHHHHHHHHHhhccccccCC
Q 045108          189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHV-ADNSCFHYHRRLMIWNLEGFCHIQD  267 (425)
Q Consensus       189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~-~N~SaW~yR~~ll~~l~~~~~~~~~  267 (425)
                        +++.+.++.++++.+|.+..+|.....+....+.  +.+.+..+++.+..+| .+..+|.....+.... +       
T Consensus       129 --~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------  196 (225)
T 2vq2_A          129 --FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ--LGDADYYFKKYQSRVEVLQADDLLLGWKIAKAL-G-------  196 (225)
T ss_dssp             --HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-T-------
T ss_pred             --HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc-C-------
Confidence              6888999999999999999999999888877765  7888999999999999 8888875544443331 1       


Q ss_pred             CCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 045108          268 NNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHR  305 (425)
Q Consensus       268 ~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yr  305 (425)
                                  ..++...+...++..+|++..++.++
T Consensus       197 ------------~~~~a~~~~~~~~~~~p~~~~~~~~l  222 (225)
T 2vq2_A          197 ------------NAQAAYEYEAQLQANFPYSEELQTVL  222 (225)
T ss_dssp             ------------CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ------------cHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence                        14556677777888899999887765

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.53  E-value=3.9e-06  Score=77.41  Aligned_cols=165  Identities=7%  Similarity=-0.093  Sum_probs=139.0

Q ss_pred             chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhh----hhHHHHHHHHHhhccch
Q 045108          111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQA----WSHRRWVINMISRNCST  186 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~----W~hRrwll~~l~~~~~~  186 (425)
                      ..++++.....++..+|++..+|..+..+....   ..+++++..+..++. .|+++..    |..+..+....+.    
T Consensus        18 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~----   89 (272)
T 3u4t_A           18 NYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYEL---AKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQ----   89 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHT---TCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTC----
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH---hhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHccc----
Confidence            357899999999999999999999999988877   478999999999999 5555544    7788777776654    


Q ss_pred             hHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHH-HHHHHhhcccccc
Q 045108          187 LQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHR-RLMIWNLEGFCHI  265 (425)
Q Consensus       187 ~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~-~ll~~l~~~~~~~  265 (425)
                          +++.+..+.++++.+|.+..+|...+.+....+.  +++.+..+++.+..+|.+..+|..+. .+....       
T Consensus        90 ----~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~-------  156 (272)
T 3u4t_A           90 ----DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN--FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK-------  156 (272)
T ss_dssp             ----HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC--HHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT-------
T ss_pred             ----HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccC--HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH-------
Confidence                6899999999999999999999999999888775  78999999999999999999999988 443321       


Q ss_pred             CCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 045108          266 QDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSL  310 (425)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~  310 (425)
                                    -+++.+....+++..+|.+..+|..+..+..
T Consensus       157 --------------~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~  187 (272)
T 3u4t_A          157 --------------EYVKADSSFVKVLELKPNIYIGYLWRARANA  187 (272)
T ss_dssp             --------------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             --------------HHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence                          2677888889999999999888888655544

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.53  E-value=2.9e-06  Score=88.59  Aligned_cols=162  Identities=7%  Similarity=-0.121  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHH
Q 045108          113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIE  192 (425)
Q Consensus       113 ~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~  192 (425)
                      +++++....++..+|++..+|.....++...+   .+++++..+..++..+|++..+|.....++...++        ++
T Consensus         6 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------~~   74 (568)
T 2vsy_A            6 PRELLQLRAAVRHRPQDFVAWLMLADAELGMG---DTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQR--------HA   74 (568)
T ss_dssp             ---------------CCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTC--------HH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--------HH
Confidence            56788889999999999999999999888774   78999999999999999999999999998887765        68


Q ss_pred             HHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCC
Q 045108          193 RESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSG  272 (425)
Q Consensus       193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~  272 (425)
                      +.+..+.++++.+|.+..+|.....+....+.  +++.++.+++.+..+|.+..+|..+..+...+..            
T Consensus        75 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~------------  140 (568)
T 2vsy_A           75 EAAVLLQQASDAAPEHPGIALWLGHALEDAGQ--AEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCD------------  140 (568)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc------------
Confidence            99999999999999999999999999888775  7889999999999999999999888877765310            


Q ss_pred             chhhhhHHHHHHHHHHHHHHhhcCCCccHHHH
Q 045108          273 YFVETYQVWKEELDWNESLIKRYVGREALWLH  304 (425)
Q Consensus       273 ~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~y  304 (425)
                           ..-+++.+++..+++..+|++.++|..
T Consensus       141 -----~g~~~~A~~~~~~al~~~p~~~~~~~~  167 (568)
T 2vsy_A          141 -----WRALDVLSAQVRAAVAQGVGAVEPFAF  167 (568)
T ss_dssp             -----CTTHHHHHHHHHHHHHHTCCCSCHHHH
T ss_pred             -----cccHHHHHHHHHHHHhcCCcccChHHH
Confidence                 012567788888999999999888853

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.53  E-value=5.3e-06  Score=79.66  Aligned_cols=165  Identities=8%  Similarity=-0.025  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHc-------cCCc----ccHHHHHHHHHHHHh-hCCCchhhhhHHHHHHHHH
Q 045108          113 IEVMIHSKALLLLSCDFATAWNSRKLIVSN-------KQLL----PILMDELRLSAVVLS-HSPKSEQAWSHRRWVINMI  180 (425)
Q Consensus       113 ~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~-------~~~~----~~l~~EL~~~~~lL~-~~PKsy~~W~hRrwll~~l  180 (425)
                      .+++...+.+|..+|.+..+|..+..++..       .+..    ...++.+..+..++. .+|++..+|....-++...
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            678899999999999999999999887753       2200    013788999999999 6999999999988887766


Q ss_pred             hhccchhHHhHHHHHHHHHHHHHhcCCchh-hhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 045108          181 SRNCSTLQWIIERESELVEKIAERSKMNYR-AWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNL  259 (425)
Q Consensus       181 ~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~-AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~  259 (425)
                      +.        +++...+..++++.+|.+.. +|.....++...+.  +++......+.+..+|.+.+.|.-...+-....
T Consensus       113 ~~--------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~  182 (308)
T 2ond_A          113 MK--------YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG--IKSGRMIFKKAREDARTRHHVYVTAALMEYYCS  182 (308)
T ss_dssp             TC--------HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC--HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTS
T ss_pred             CC--------HHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence            54        67888999999999999987 99988877766554  678899999999999988888764332221111


Q ss_pred             ccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 045108          260 EGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRR  306 (425)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr  306 (425)
                      +                   -.++......++|..+|++..+|...-
T Consensus       183 ~-------------------~~~~A~~~~~~al~~~p~~~~~~~~~~  210 (308)
T 2ond_A          183 K-------------------DKSVAFKIFELGLKKYGDIPEYVLAYI  210 (308)
T ss_dssp             C-------------------CHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             C-------------------CHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            1                   145566777888888999999886643

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.51  E-value=4.6e-07  Score=79.33  Aligned_cols=113  Identities=9%  Similarity=-0.081  Sum_probs=103.0

Q ss_pred             HHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHH
Q 045108          119 SKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELV  198 (425)
Q Consensus       119 t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~  198 (425)
                      ...++.++|++..+|..++.++...+   .+++++..+..++..+|+++.+|..+..++..++.        +++.+..+
T Consensus        25 l~~al~l~p~~~~~~~~lg~~~~~~g---~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~--------~~~Ai~~~   93 (151)
T 3gyz_A           25 LKDINAIPDDMMDDIYSYAYDFYNKG---RIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ--------FQQAADLY   93 (151)
T ss_dssp             TGGGCCSCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc--------HHHHHHHH
Confidence            35567899999999999999888774   89999999999999999999999999999988775        78999999


Q ss_pred             HHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC
Q 045108          199 EKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVAD  244 (425)
Q Consensus       199 ~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N  244 (425)
                      .++++.+|.|..+|.+.+-++..++.  +++.+..+++.+..+|.+
T Consensus        94 ~~al~l~P~~~~~~~~lg~~~~~lg~--~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A           94 AVAFALGKNDYTPVFHTGQCQLRLKA--PLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             HHHHHHSSSCCHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCCCH
T ss_pred             HHHHhhCCCCcHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCH
Confidence            99999999999999999999998886  789999999999998864

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.51  E-value=1.3e-05  Score=73.05  Aligned_cols=160  Identities=9%  Similarity=-0.057  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHh--hCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108          113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLS--HSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (425)
Q Consensus       113 ~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~--~~PKsy~~W~hRrwll~~l~~~~~~~~~~  190 (425)
                      +++++....++..+|++..+|.....++...   ..+++.+.++..++.  .+|.+..+|.....++...+.        
T Consensus        88 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------  156 (252)
T 2ho1_A           88 KLADEEYRKALASDSRNARVLNNYGGFLYEQ---KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK--------  156 (252)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC--------
T ss_pred             HHHHHHHHHHHHHCcCcHHHHHHHHHHHHHH---hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC--------
Confidence            3344444444444444444444444443333   134444444444444  444444444444433333222        


Q ss_pred             HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCC
Q 045108          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNS  270 (425)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~  270 (425)
                      +++.+.++.++++.+|.+..+|.....+....+.  +...+..+.+.+..+|.+..+|..+..+....            
T Consensus       157 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  222 (252)
T 2ho1_A          157 PAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE--YVPARQYYDLFAQGGGQNARSLLLGIRLAKVF------------  222 (252)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHT------------
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc------------
Confidence            3444455555555555555555444444443332  34445555555555555544444433333221            


Q ss_pred             CCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 045108          271 SGYFVETYQVWKEELDWNESLIKRYVGREALWLHR  305 (425)
Q Consensus       271 ~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yr  305 (425)
                              .-+++...+..+++..+|++..++.++
T Consensus       223 --------g~~~~A~~~~~~~~~~~p~~~~~~~~l  249 (252)
T 2ho1_A          223 --------EDRDTAASYGLQLKRLYPGSLEYQEFQ  249 (252)
T ss_dssp             --------TCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred             --------cCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence                    113455666666777777776665543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.51  E-value=3.4e-05  Score=79.56  Aligned_cols=235  Identities=9%  Similarity=-0.056  Sum_probs=150.9

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++++.....++..+|++..+|+....+....   +.+++++.++..++..+|++..+|+....++.+.+.        +
T Consensus       355 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~  423 (597)
T 2xpi_A          355 KNKLYLISNDLVDRHPEKAVTWLAVGIYYLCV---NKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGE--------H  423 (597)
T ss_dssp             HHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------H
T ss_pred             HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------H
Confidence            45666777777777777777777777666665   367788888888888888888888877776666544        5


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCC
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSS  271 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~  271 (425)
                      ++.++++.++++.+|.+..+|.....+....+.  +++.++..++++..+|.|..+|..+..++.+. +           
T Consensus       424 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----------  489 (597)
T 2xpi_A          424 DQAISAYTTAARLFQGTHLPYLFLGMQHMQLGN--ILLANEYLQSSYALFQYDPLLLNELGVVAFNK-S-----------  489 (597)
T ss_dssp             HHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT-T-----------
T ss_pred             HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-C-----------
Confidence            777888888888888888888888777776664  67778888888888888888887777666542 1           


Q ss_pred             CchhhhhHHHHHHHHHHHHHHhh------cCCC-ccHHHHHHHHHHHHHHHHhhhccCcCCCCCCCCCchhhHHHHHHHH
Q 045108          272 GYFVETYQVWKEELDWNESLIKR------YVGR-EALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHE  344 (425)
Q Consensus       272 ~~~~~~~~~~~~EL~~~~~~I~~------~p~n-eSaW~yrr~Ll~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E  344 (425)
                              .+++.+++..+++..      +|.+ ..+|..+-.+....        ++                  .++=
T Consensus       490 --------~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~--------g~------------------~~~A  535 (597)
T 2xpi_A          490 --------DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL--------KM------------------YDAA  535 (597)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT--------TC------------------HHHH
T ss_pred             --------CHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh--------cC------------------HHHH
Confidence                    256667777777776      4443 34555543333210        10                  1222


Q ss_pred             HHHHHhhhccCCCCcchhHHHhHHHHHHHHHHHhhhhcccccchhhhhhhcchhhHHHHHhhhCCCccchhhhhhccCCC
Q 045108          345 LCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQIPEYQGINIQEKLQAGAGDLMRMLKRSCPDRSSLWDYLVGYHSE  424 (425)
Q Consensus       345 ~~lv~~~~~~~p~d~~~~~~~qs~~~~~y~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~r~~~w~~~~~~~~~  424 (425)
                      ++..+.++..+|++..         ++.   .|...+... | +.+     .+...+...-+.+|.....|..+.+...+
T Consensus       536 ~~~~~~~~~~~p~~~~---------~~~---~l~~~~~~~-g-~~~-----~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  596 (597)
T 2xpi_A          536 IDALNQGLLLSTNDAN---------VHT---AIALVYLHK-K-IPG-----LAITHLHESLAISPNEIMASDLLKRALEE  596 (597)
T ss_dssp             HHHHHHHHHHSSCCHH---------HHH---HHHHHHHHT-T-CHH-----HHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHhCCCChH---------HHH---HHHHHHHHh-C-CHH-----HHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence            3445566667787632         111   222222222 3 111     24455555557789888888877766543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.50  E-value=9.2e-07  Score=76.31  Aligned_cols=134  Identities=9%  Similarity=-0.047  Sum_probs=113.2

Q ss_pred             ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhh
Q 045108          147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ  226 (425)
Q Consensus       147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~  226 (425)
                      .++++.+..+..++..+|+++.+|.+...+..+.+.        +++.+..+.++++.+|.|..+|...+.+...++.  
T Consensus        11 ~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~--------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~--   80 (150)
T 4ga2_A           11 ADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKE--------YDLAKKYICTYINVQERDPKAHRFLGLLYELEEN--   80 (150)
T ss_dssp             HHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--
T ss_pred             ChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc--
Confidence            467889999999999999999999888887777654        7899999999999999999999999999988876  


Q ss_pred             HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHH-HHHHHHHhhcCCCccHHHHH
Q 045108          227 VLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEEL-DWNESLIKRYVGREALWLHR  305 (425)
Q Consensus       227 ~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL-~~~~~~I~~~p~neSaW~yr  305 (425)
                      ++..+....+.++.+|.|..+|..+..++.....                    +.+.. .+.++++..+|+|..+|..+
T Consensus        81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--------------------~~~aa~~~~~~al~l~P~~~~~~~l~  140 (150)
T 4ga2_A           81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDV--------------------TDGRAKYWVERAAKLFPGSPAVYKLK  140 (150)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS--------------------SSSHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            7899999999999999999999999988776421                    11223 35678899999999998877


Q ss_pred             HHHHH
Q 045108          306 RFLSL  310 (425)
Q Consensus       306 r~Ll~  310 (425)
                      ..|+.
T Consensus       141 ~~ll~  145 (150)
T 4ga2_A          141 EQLLD  145 (150)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66653

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.49  E-value=1.3e-05  Score=82.64  Aligned_cols=167  Identities=7%  Similarity=-0.078  Sum_probs=141.8

Q ss_pred             chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108          111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~  190 (425)
                      ..+++++....++.++|++..+|+....++...+   .+++++.++..++..+|++..+|.....+..+.+.        
T Consensus       388 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------  456 (597)
T 2xpi_A          388 KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG---EHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGN--------  456 (597)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTC--------
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC--------
Confidence            4578899999999999999999999998888774   78999999999999999999999999888877664        


Q ss_pred             HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhh------cCCC-hhHHHHHHHHHHHhhcccc
Q 045108          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGL------HVAD-NSCFHYHRRLMIWNLEGFC  263 (425)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~------d~~N-~SaW~yR~~ll~~l~~~~~  263 (425)
                      +++.+++..++++.+|.+..+|.....++...+.  +++.++.+++++..      +|.+ ..+|..+..++... +   
T Consensus       457 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~-g---  530 (597)
T 2xpi_A          457 ILLANEYLQSSYALFQYDPLLLNELGVVAFNKSD--MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL-K---  530 (597)
T ss_dssp             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT-T---
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh-c---
Confidence            6889999999999999999999999999988775  78889999999988      6665 46788777776553 1   


Q ss_pred             ccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 045108          264 HIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSL  310 (425)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~  310 (425)
                                      .+++.+++.++++..+|.+..+|..+..+..
T Consensus       531 ----------------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  561 (597)
T 2xpi_A          531 ----------------MYDAAIDALNQGLLLSTNDANVHTAIALVYL  561 (597)
T ss_dssp             ----------------CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred             ----------------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence                            2677788889999999999999888655543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.49  E-value=5.2e-06  Score=75.28  Aligned_cols=161  Identities=6%  Similarity=-0.041  Sum_probs=119.4

Q ss_pred             hHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHccCCcccHHHHHHHHHHHHh-----------------------
Q 045108          112 AIEVMIHSKALLLLSCDF-------ATAWNSRKLIVSNKQLLPILMDELRLSAVVLS-----------------------  161 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~-------~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~-----------------------  161 (425)
                      .++++.....++.++|++       ..+|.....+....+   .+++++..+..++.                       
T Consensus        54 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~  130 (258)
T 3uq3_A           54 YETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG---DLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEA  130 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHH
Confidence            467888888888888877       688888888777763   67777777777777                       


Q ss_pred             ---hCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHH
Q 045108          162 ---HSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWS  238 (425)
Q Consensus       162 ---~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i  238 (425)
                         .+|.+..+|..+..+....+.        +++.+..+.++++.+|.+..+|.....+....+.  +.+.+..+++.+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al  200 (258)
T 3uq3_A          131 EAYVNPEKAEEARLEGKEYFTKSD--------WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS--FPEAIADCNKAI  200 (258)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred             HHHcCcchHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCC--HHHHHHHHHHHH
Confidence               666667777777666665543        5778888888888888888888888888777665  677888888888


Q ss_pred             hhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhc------CCCccHHHHH
Q 045108          239 GLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRY------VGREALWLHR  305 (425)
Q Consensus       239 ~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~------p~neSaW~yr  305 (425)
                      ..+|.+..+|..+..+.... +                   -+++.+.+..+++..+      |.|..++...
T Consensus       201 ~~~~~~~~~~~~l~~~~~~~-g-------------------~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l  253 (258)
T 3uq3_A          201 EKDPNFVRAYIRKATAQIAV-K-------------------EYASALETLDAARTKDAEVNNGSSAREIDQLY  253 (258)
T ss_dssp             HHCTTCHHHHHHHHHHHHHT-T-------------------CHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred             HhCHHHHHHHHHHHHHHHHH-h-------------------hHHHHHHHHHHHHHhChhhcCCCchHHHHHHH
Confidence            88888888888777776653 1                   1455666677777777      7766666543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.49  E-value=2e-05  Score=75.86  Aligned_cols=165  Identities=8%  Similarity=-0.060  Sum_probs=129.7

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHH----------------HH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHR----------------RW  175 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hR----------------rw  175 (425)
                      .++++.....++.++|++..+|..+..+....+   .+++.+..+..++..+|++..+|..+                ..
T Consensus       114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (368)
T 1fch_A          114 ELLAISALRRCLELKPDNQTALMALAVSFTNES---LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS  190 (368)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence            467788888888888888888888887777663   67888888888888888888887643                11


Q ss_pred             HHHHHhhccchhHHhHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHH
Q 045108          176 VINMISRNCSTLQWIIERESELVEKIAERSKM--NYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRR  253 (425)
Q Consensus       176 ll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pk--NY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~  253 (425)
                      ++ ..        ..+.+.+.++.++++.+|.  +..+|.....+....+.  +.+.+..+.+.+..+|.+..+|..+..
T Consensus       191 ~~-~~--------~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~l~~  259 (368)
T 1fch_A          191 LL-SD--------SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE--YDKAVDCFTAALSVRPNDYLLWNKLGA  259 (368)
T ss_dssp             HH-HH--------HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             Hh-hc--------ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence            11 22        2368889999999999999  78889888888877665  788999999999999999999999888


Q ss_pred             HHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 045108          254 LMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSL  310 (425)
Q Consensus       254 ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~  310 (425)
                      +.... +                   -+++.+.+..+++..+|.+..+|..+-.+..
T Consensus       260 ~~~~~-g-------------------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  296 (368)
T 1fch_A          260 TLANG-N-------------------QSEEAVAAYRRALELQPGYIRSRYNLGISCI  296 (368)
T ss_dssp             HHHHT-T-------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHc-C-------------------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            77653 1                   2677788889999999999888877655543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.49  E-value=1.4e-05  Score=72.93  Aligned_cols=164  Identities=8%  Similarity=-0.048  Sum_probs=138.4

Q ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHH
Q 045108          113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIE  192 (425)
Q Consensus       113 ~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~  192 (425)
                      ++++.....++..+|++..+|.....+....   ..+++++..+..++..+|.+..+|.....++...+.        ++
T Consensus        54 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~--------~~  122 (252)
T 2ho1_A           54 EQAKVPLRKALEIDPSSADAHAALAVVFQTE---MEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKR--------YE  122 (252)
T ss_dssp             GGGHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HH
T ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhH--------HH
Confidence            5688899999999999999999999888877   478999999999999999999999998888776654        68


Q ss_pred             HHHHHHHHHHH--hcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCC
Q 045108          193 RESELVEKIAE--RSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNS  270 (425)
Q Consensus       193 ~EL~~~~~~l~--~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~  270 (425)
                      +.+.++.++++  .+|.+..+|.....+....+.  +++.+..+.+.+..+|.+..+|..+..+.... +          
T Consensus       123 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-g----------  189 (252)
T 2ho1_A          123 EAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK--PAQAKEYFEKSLRLNRNQPSVALEMADLLYKE-R----------  189 (252)
T ss_dssp             HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-T----------
T ss_pred             HHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-C----------
Confidence            88999999999  899999999999988877765  78899999999999999998888777666543 1          


Q ss_pred             CCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 045108          271 SGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLS  309 (425)
Q Consensus       271 ~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll  309 (425)
                               -+++.+.+..+.+..+|.+..+|..+..+.
T Consensus       190 ---------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  219 (252)
T 2ho1_A          190 ---------EYVPARQYYDLFAQGGGQNARSLLLGIRLA  219 (252)
T ss_dssp             ---------CHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred             ---------CHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence                     156778888889999999888776554433

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.47  E-value=9e-06  Score=69.46  Aligned_cols=156  Identities=9%  Similarity=-0.030  Sum_probs=131.6

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++++.....++..+|++..+|.....+....   ..+++.+..+..++..+|.+..+|.....++...+.        +
T Consensus        24 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~   92 (186)
T 3as5_A           24 YSQAVMLLEQVYDADAFDVDVALHLGIAYVKT---GAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQK--------Y   92 (186)
T ss_dssp             HHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------H
T ss_pred             HHHHHHHHHHHHHhCccChHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--------H
Confidence            46788888889999999999999999888776   478999999999999999999999988888777654        6


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCC
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSS  271 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~  271 (425)
                      ++.+.++.++++.+|.+..+|.....+....+.  +++.+..+.+.+..+|.+..+|.....+.... +           
T Consensus        93 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~-----------  158 (186)
T 3as5_A           93 DLAVPLLIKVAEANPINFNVRFRLGVALDNLGR--FDEAIDSFKIALGLRPNEGKVHRAIAFSYEQM-G-----------  158 (186)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-T-----------
T ss_pred             HHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHHc-C-----------
Confidence            888999999999999999999999988877665  78889999999999999988888777766543 1           


Q ss_pred             CchhhhhHHHHHHHHHHHHHHhhcCCCcc
Q 045108          272 GYFVETYQVWKEELDWNESLIKRYVGREA  300 (425)
Q Consensus       272 ~~~~~~~~~~~~EL~~~~~~I~~~p~neS  300 (425)
                              -+++.+.+..+.+..+|++..
T Consensus       159 --------~~~~A~~~~~~~~~~~~~~~~  179 (186)
T 3as5_A          159 --------RHEEALPHFKKANELDEGASV  179 (186)
T ss_dssp             --------CHHHHHHHHHHHHHHHHCCCG
T ss_pred             --------CHHHHHHHHHHHHHcCCCchh
Confidence                    156677788888888887653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.46  E-value=1.4e-05  Score=79.23  Aligned_cols=166  Identities=9%  Similarity=0.003  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHH------------HHHHH
Q 045108          113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRW------------VINMI  180 (425)
Q Consensus       113 ~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrw------------ll~~l  180 (425)
                      ++++.....++..+|++..+|+.+..+....   ..+++++..+..++..+|.+..+|.....            ++.+.
T Consensus       194 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (450)
T 2y4t_A          194 RKAISDLKAASKLKNDNTEAFYKISTLYYQL---GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD  270 (450)
T ss_dssp             GGGHHHHHHHHHHHCSCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4566677777777777777777777766665   36778888888888888888877765522            22221


Q ss_pred             hhccchhHHhHHHHHHHHHHHHHhcCCc----hhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 045108          181 SRNCSTLQWIIERESELVEKIAERSKMN----YRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMI  256 (425)
Q Consensus       181 ~~~~~~~~~~~~~EL~~~~~~l~~~pkN----Y~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~  256 (425)
                              ..+.+.+.++.++++.+|.+    ..+|.....++...+.  +.+.+..+++++..+|.+..+|..+..++.
T Consensus       271 --------g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  340 (450)
T 2y4t_A          271 --------GRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEK--PVEAIRVCSEVLQMEPDNVNALKDRAEAYL  340 (450)
T ss_dssp             --------TCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             --------CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence                    23678889999999999998    4467777777777665  788999999999999999999999888876


Q ss_pred             HhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q 045108          257 WNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLY  311 (425)
Q Consensus       257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~  311 (425)
                      .. +                   -+++.+.+..+++..+|++..+|..+..+...
T Consensus       341 ~~-~-------------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  375 (450)
T 2y4t_A          341 IE-E-------------------MYDEAIQDYETAQEHNENDQQIREGLEKAQRL  375 (450)
T ss_dssp             HT-T-------------------CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             Hh-c-------------------CHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence            53 1                   26778889999999999999999888765544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.46  E-value=2.3e-05  Score=73.53  Aligned_cols=165  Identities=7%  Similarity=-0.099  Sum_probs=130.4

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++++.....++..+|++..+|..+..+....+   .+++.+..+..++..+|++..+|.....+....+.        +
T Consensus        37 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~--------~  105 (327)
T 3cv0_A           37 LAEAALAFEAVCQAAPEREEAWRSLGLTQAENE---KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN--------A  105 (327)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCC--------H
Confidence            477889999999999999999999998888774   78999999999999999999999988888776654        6


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHH--------------HH-HHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 045108          192 ERESELVEKIAERSKMNYRAWNHR--------------CW-LVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMI  256 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR--------------~w-ll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~  256 (425)
                      ++.+..+.++++.+|.+..+|...              .- +.  .....+.+.+..+.+.+..+|.+..+|..+..+..
T Consensus       106 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  183 (327)
T 3cv0_A          106 NAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFF--AAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYN  183 (327)
T ss_dssp             HHHHHHHHHHHHTSTTTTTC--------------------CCT--TSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHH--HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            888899999999999998888765              21 12  12234778899999999999999988888877765


Q ss_pred             HhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 045108          257 WNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLS  309 (425)
Q Consensus       257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll  309 (425)
                      .. +                   -+++.+.+..+++..+|.+..+|..+-.+.
T Consensus       184 ~~-~-------------------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  216 (327)
T 3cv0_A          184 LS-N-------------------NYDSAAANLRRAVELRPDDAQLWNKLGATL  216 (327)
T ss_dssp             HT-T-------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             Hh-c-------------------cHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            53 1                   256778888888999999988887664444

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.45  E-value=3.4e-06  Score=72.68  Aligned_cols=121  Identities=7%  Similarity=-0.165  Sum_probs=106.8

Q ss_pred             HHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHH
Q 045108          119 SKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELV  198 (425)
Q Consensus       119 t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~  198 (425)
                      ...++.++|++..+|..+..++...+   .+.+++..+..++..+|.++.+|..+..++..++.        +++.+..+
T Consensus        10 ~~~al~~~p~~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------~~~A~~~~   78 (148)
T 2vgx_A           10 IAMLNEISSDTLEQLYSLAFNQYQSG---XYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ--------YDLAIHSY   78 (148)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHH
T ss_pred             HHHHHcCCHhhHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhh--------HHHHHHHH
Confidence            56778899999999999998888774   79999999999999999999999999999887765        68999999


Q ss_pred             HHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHH
Q 045108          199 EKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHR  252 (425)
Q Consensus       199 ~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~  252 (425)
                      .++++.+|.+..+|.+.+.++..++.  +++.+..+.+.+..+|.|-.....+.
T Consensus        79 ~~al~l~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~  130 (148)
T 2vgx_A           79 SYGAVMDIXEPRFPFHAAECLLQXGE--LAEAESGLFLAQELIANXPEFXELST  130 (148)
T ss_dssp             HHHHHHSTTCTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred             HHHHhcCCCCchHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCcCCCcchHHHH
Confidence            99999999999999999999988876  78899999999999998765544443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.44  E-value=1.2e-05  Score=81.59  Aligned_cols=160  Identities=7%  Similarity=0.006  Sum_probs=138.5

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++++.....++..+|+ ..+|.....++...   ..+.+.+..+..++..+|++..+|..+..+....+.        +
T Consensus       259 ~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~  326 (537)
T 3fp2_A          259 LLDAQVLLQESINLHPT-PNSYIFLALTLADK---ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQD--------Y  326 (537)
T ss_dssp             HHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCS---SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHHHHHHhcCCC-chHHHHHHHHHHHh---cCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC--------H
Confidence            46889999999999999 89999888887766   478999999999999999999999999988887665        6


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCC
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSS  271 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~  271 (425)
                      .+.+..+.++++.+|.+..+|.....+....+.  +.+.++.+.+.+..+|.+..+|..+..+.... +           
T Consensus       327 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----------  392 (537)
T 3fp2_A          327 KNAKEDFQKAQSLNPENVYPYIQLACLLYKQGK--FTESEAFFNETKLKFPTLPEVPTFFAEILTDR-G-----------  392 (537)
T ss_dssp             HHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT-T-----------
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-C-----------
Confidence            889999999999999999999999999988776  78899999999999999999999988777653 1           


Q ss_pred             CchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 045108          272 GYFVETYQVWKEELDWNESLIKRYVGREALWLHR  305 (425)
Q Consensus       272 ~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yr  305 (425)
                              -+++.+.+..+++..+|.+..+|...
T Consensus       393 --------~~~~A~~~~~~a~~~~~~~~~~~~~~  418 (537)
T 3fp2_A          393 --------DFDTAIKQYDIAKRLEEVQEKIHVGI  418 (537)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHCSSCSSTT
T ss_pred             --------CHHHHHHHHHHHHHcCCcchhhHHHH
Confidence                    15677888888888888888776543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.44  E-value=1.3e-05  Score=72.68  Aligned_cols=172  Identities=10%  Similarity=-0.064  Sum_probs=136.3

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc-------hhhhhHHHHHHHHHhhcc
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS-------EQAWSHRRWVINMISRNC  184 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs-------y~~W~hRrwll~~l~~~~  184 (425)
                      .++++.....++..+ .+..+|..+..+....+   .+++.+..+..++..+|++       ..+|.....+....+...
T Consensus        21 ~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   96 (258)
T 3uq3_A           21 FDEAIEHYNKAWELH-KDITYLNNRAAAEYEKG---EYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLK   96 (258)
T ss_dssp             HHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHH
Confidence            578999999999999 99999999999988874   7899999999999999887       688888877777655421


Q ss_pred             ch------------------hHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChh
Q 045108          185 ST------------------LQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNS  246 (425)
Q Consensus       185 ~~------------------~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~S  246 (425)
                      ..                  ....+++.+..+.++++.+|.+..+|.....+....+.  +...+..+++.+..+|.+..
T Consensus        97 ~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~  174 (258)
T 3uq3_A           97 KTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD--WPNAVKAYTEMIKRAPEDAR  174 (258)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCcccHH
Confidence            10                  01223444455666666899999999999998877765  78999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 045108          247 CFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLS  309 (425)
Q Consensus       247 aW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll  309 (425)
                      +|..+..+.... +                   -+++.+.+..+.+..+|.+..+|..+..+.
T Consensus       175 ~~~~l~~~~~~~-~-------------------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  217 (258)
T 3uq3_A          175 GYSNRAAALAKL-M-------------------SFPEAIADCNKAIEKDPNFVRAYIRKATAQ  217 (258)
T ss_dssp             HHHHHHHHHHHT-T-------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-C-------------------CHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            999988777653 1                   267788889999999999988887765444

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.44  E-value=2e-05  Score=75.73  Aligned_cols=165  Identities=10%  Similarity=-0.033  Sum_probs=135.3

Q ss_pred             chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108          111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~  190 (425)
                      ..++++.....++..+|++..+|..+..+....+   .+++++..+..++..+|++..+|.....+....+.        
T Consensus        79 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~--------  147 (368)
T 1fch_A           79 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE---QELLAISALRRCLELKPDNQTALMALAVSFTNESL--------  147 (368)
T ss_dssp             CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--------
Confidence            3478999999999999999999999999888874   78999999999999999999999999988887654        


Q ss_pred             HHHHHHHHHHHHHhcCCchhhhhHH----------------HHHHHhhchhhHHHHHHHHHHHHhhcCC--ChhHHHHHH
Q 045108          191 IERESELVEKIAERSKMNYRAWNHR----------------CWLVSFMTREQVLNELKQSRNWSGLHVA--DNSCFHYHR  252 (425)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR----------------~wll~~~~~~~~~~EL~~~~~~i~~d~~--N~SaW~yR~  252 (425)
                      +.+.+.++.++++.+|.+..+|..+                ..++ ..  ..+.+.+..+.+.+..+|.  +..+|..+.
T Consensus       148 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~  224 (368)
T 1fch_A          148 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SD--SLFLEVKELFLAAVRLDPTSIDPDVQCGLG  224 (368)
T ss_dssp             HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HH--HHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hc--ccHHHHHHHHHHHHHhCcCcccHHHHHHHH
Confidence            6889999999999999999999743                2222 22  2478889999999999999  677777776


Q ss_pred             HHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 045108          253 RLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLS  309 (425)
Q Consensus       253 ~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll  309 (425)
                      .+.... +                   -+++.+.+..+++..+|.+..+|+.+-.+.
T Consensus       225 ~~~~~~-g-------------------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  261 (368)
T 1fch_A          225 VLFNLS-G-------------------EYDKAVDCFTAALSVRPNDYLLWNKLGATL  261 (368)
T ss_dssp             HHHHHT-T-------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHc-C-------------------CHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            666542 1                   266778888999999999988887765444

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.43  E-value=2.7e-05  Score=74.70  Aligned_cols=163  Identities=9%  Similarity=0.002  Sum_probs=132.7

Q ss_pred             hHHHHHHHHHHHHh--CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHH
Q 045108          112 AIEVMIHSKALLLL--SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQW  189 (425)
Q Consensus       112 ~~~~L~~t~~lLl~--npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~  189 (425)
                      .+++++..+.++..  +|++.+++...+.++...+   .+++++..+..     |.+..++..+..++.+++.       
T Consensus        81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g---~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~-------  145 (291)
T 3mkr_A           81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ---NPDAALRTLHQ-----GDSLECMAMTVQILLKLDR-------  145 (291)
T ss_dssp             HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT---CHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTC-------
T ss_pred             HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC---CHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCC-------
Confidence            47888888888876  6999999999999888774   78999988876     9999999999988888765       


Q ss_pred             hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCC
Q 045108          190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNN  269 (425)
Q Consensus       190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~  269 (425)
                       +++.+..+.++++.+|.+...-....|+--..+...+++.+...++++..+|.+..+|+.+..++..+ +         
T Consensus       146 -~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~-g---------  214 (291)
T 3mkr_A          146 -LDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ-G---------  214 (291)
T ss_dssp             -HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT-T---------
T ss_pred             -HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-C---------
Confidence             58889999999999999865444444544333334588999999999999999999999988887664 2         


Q ss_pred             CCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 045108          270 SSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSL  310 (425)
Q Consensus       270 ~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~  310 (425)
                                -+++......+++..+|.|..+|.++-.+..
T Consensus       215 ----------~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~  245 (291)
T 3mkr_A          215 ----------RWEAAEGVLQEALDKDSGHPETLINLVVLSQ  245 (291)
T ss_dssp             ----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             ----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence                      2677888889999999999999988755543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.42  E-value=5.5e-06  Score=68.08  Aligned_cols=118  Identities=8%  Similarity=-0.020  Sum_probs=101.6

Q ss_pred             CccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcC
Q 045108          127 CDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK  206 (425)
Q Consensus       127 pe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p  206 (425)
                      |+...+|..++..+...   ..+++++..++.++..+|++..+|..+..+...++.        +.+.+..+.++++.+|
T Consensus         1 p~~a~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~al~~~p   69 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTK---SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS--------FPEAIADCNKAIEKDP   69 (126)
T ss_dssp             CHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCT
T ss_pred             CchHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhCC
Confidence            45667888888877776   478999999999999999999999999999888765        6889999999999999


Q ss_pred             CchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhc------CCChhHHHHHHHHHHH
Q 045108          207 MNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLH------VADNSCFHYHRRLMIW  257 (425)
Q Consensus       207 kNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d------~~N~SaW~yR~~ll~~  257 (425)
                      .+..+|..++.+...++.  +.+.+..+.+.+..+      |.|..++.....+..+
T Consensus        70 ~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           70 NFVRAYIRKATAQIAVKE--YASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            999999999999988776  788899999999999      8888887776665543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.42  E-value=1.7e-05  Score=74.49  Aligned_cols=170  Identities=11%  Similarity=-0.072  Sum_probs=134.4

Q ss_pred             chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHH----------HH-
Q 045108          111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVI----------NM-  179 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll----------~~-  179 (425)
                      ..++++.....++..+|++..+|.....+....   ..+++++..+..++..+|++..+|....-.+          .. 
T Consensus        70 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (327)
T 3cv0_A           70 KDGLAIIALNHARMLDPKDIAVHAALAVSHTNE---HNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDF  146 (327)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSTTTTTC--------------------C
T ss_pred             CHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhH
Confidence            357899999999999999999999999888777   4789999999999999999999887761111          11 


Q ss_pred             HhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 045108          180 ISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNL  259 (425)
Q Consensus       180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~  259 (425)
                      +..    ....+.+.+.++.++++.+|.+..+|.....+....+.  +++.+..+.+.+..+|.+..+|..+..+.... 
T Consensus       147 ~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-  219 (327)
T 3cv0_A          147 FFA----APNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNN--YDSAAANLRRAVELRPDDAQLWNKLGATLANG-  219 (327)
T ss_dssp             CTT----SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-
T ss_pred             HHH----HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-
Confidence            000    02346888999999999999999999999998887765  78899999999999999999999888777653 


Q ss_pred             ccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 045108          260 EGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLS  309 (425)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll  309 (425)
                      +                   -+++.+.+..+++..+|.+..+|..+-.+.
T Consensus       220 ~-------------------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~  250 (327)
T 3cv0_A          220 N-------------------RPQEALDAYNRALDINPGYVRVMYNMAVSY  250 (327)
T ss_dssp             T-------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             C-------------------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            1                   256778888999999999988887754443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.41  E-value=2.2e-05  Score=77.85  Aligned_cols=167  Identities=7%  Similarity=-0.117  Sum_probs=134.1

Q ss_pred             chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108          111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~  190 (425)
                      ..++++.....++..+|.+..+|+.+..++...+   .+++++..+..++..+|++..+|.....+....+.        
T Consensus       158 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------  226 (450)
T 2y4t_A          158 DYTAAIAFLDKILEVCVWDAELRELRAECFIKEG---EPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD--------  226 (450)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTC--------
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------
Confidence            3467889999999999999999999999888774   67899999999999999999999999888877654        


Q ss_pred             HHHHHHHHHHHHHhcCCchhhhhHH------------HHHHHhhchhhHHHHHHHHHHHHhhcCCChh----HHHHHHHH
Q 045108          191 IERESELVEKIAERSKMNYRAWNHR------------CWLVSFMTREQVLNELKQSRNWSGLHVADNS----CFHYHRRL  254 (425)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR------------~wll~~~~~~~~~~EL~~~~~~i~~d~~N~S----aW~yR~~l  254 (425)
                      +++.+.++.++++.+|.+-.+|...            ..+....+  .+.+.+..+.+++..+|.|..    +|..+..+
T Consensus       227 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~  304 (450)
T 2y4t_A          227 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDG--RYTDATSKYESVMKTEPSIAEYTVRSKERICHC  304 (450)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            6889999999999999999988765            33333333  378889999999999999855    33333333


Q ss_pred             HHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 045108          255 MIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSL  310 (425)
Q Consensus       255 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~  310 (425)
                      +...                    ..+++.+.++.+++..+|.+..+|..+-.+..
T Consensus       305 ~~~~--------------------g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  340 (450)
T 2y4t_A          305 FSKD--------------------EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL  340 (450)
T ss_dssp             HHTT--------------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHC--------------------CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            3221                    12677889999999999999999988655543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.40  E-value=2.9e-05  Score=74.47  Aligned_cols=162  Identities=6%  Similarity=-0.116  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHHH-hCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHHHhhccchhHHh
Q 045108          113 IEVMIHSKALLL-LSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQ-AWSHRRWVINMISRNCSTLQWI  190 (425)
Q Consensus       113 ~~~L~~t~~lLl-~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~-~W~hRrwll~~l~~~~~~~~~~  190 (425)
                      ++++...+.+|. ++|++..+|.....++...+   .+++.......++..+|+++. +|.....++.+.+.        
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~--------  149 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLLYFAYADYEESRM---KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG--------  149 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcC--------
Confidence            789999999999 79999999999999888774   789999999999999999998 99998887776554        


Q ss_pred             HHHHHHHHHHHHHhcCCchhhhhHHHHHHHh-hchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCC
Q 045108          191 IERESELVEKIAERSKMNYRAWNHRCWLVSF-MTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNN  269 (425)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~-~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~  269 (425)
                      +++...++.++++.+|.++++|.....+-.. .+  .........++.++.+|.+...|.....++... +         
T Consensus       150 ~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-g---------  217 (308)
T 2ond_A          150 IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK--DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL-N---------  217 (308)
T ss_dssp             HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C---------
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-C---------
Confidence            5788899999999999999998755544322 23  367889999999999999999997776655432 1         


Q ss_pred             CCCchhhhhHHHHHHHHHHHHHHhh---cCC-CccHHHHHHH
Q 045108          270 SSGYFVETYQVWKEELDWNESLIKR---YVG-REALWLHRRF  307 (425)
Q Consensus       270 ~~~~~~~~~~~~~~EL~~~~~~I~~---~p~-neSaW~yrr~  307 (425)
                                -.++......+++..   .|+ +..+|...-.
T Consensus       218 ----------~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~  249 (308)
T 2ond_A          218 ----------EDNNTRVLFERVLTSGSLPPEKSGEIWARFLA  249 (308)
T ss_dssp             ----------CHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHH
T ss_pred             ----------CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence                      145556667777875   553 7778876433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.40  E-value=2.4e-05  Score=71.86  Aligned_cols=158  Identities=8%  Similarity=-0.052  Sum_probs=109.6

Q ss_pred             hHHHHHHHHHHHHh----CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchh
Q 045108          112 AIEVMIHSKALLLL----SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTL  187 (425)
Q Consensus       112 ~~~~L~~t~~lLl~----npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~  187 (425)
                      .++++.....++..    +|.+..+|..+..+....+   .+++++..+..++..+|++..+|.....+....+.     
T Consensus        21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~-----   92 (275)
T 1xnf_A           21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLG---LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN-----   92 (275)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-----
T ss_pred             HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC-----
Confidence            35555666666655    3567777887777777663   67888888888888888888888877777766544     


Q ss_pred             HHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCC
Q 045108          188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQD  267 (425)
Q Consensus       188 ~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~  267 (425)
                         +++.+.++.++++.+|.+..+|.....+....+.  +++.+..+.+.+..+|.+.......... ...         
T Consensus        93 ---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~---------  157 (275)
T 1xnf_A           93 ---FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR--DKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQK---------  157 (275)
T ss_dssp             ---HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHH---------
T ss_pred             ---HHHHHHHHHHHHhcCccccHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCCChHHHHHHHHH-HHh---------
Confidence               5777888888888888888888888887777665  6777888888888888776444333222 110         


Q ss_pred             CCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHH
Q 045108          268 NNSSGYFVETYQVWKEELDWNESLIKRYVGREALWL  303 (425)
Q Consensus       268 ~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~  303 (425)
                                 .-+++.+.+..+.+...|.+...|.
T Consensus       158 -----------~~~~~A~~~~~~~~~~~~~~~~~~~  182 (275)
T 1xnf_A          158 -----------LDEKQAKEVLKQHFEKSDKEQWGWN  182 (275)
T ss_dssp             -----------HCHHHHHHHHHHHHHHSCCCSTHHH
T ss_pred             -----------cCHHHHHHHHHHHHhcCCcchHHHH
Confidence                       1245666667777777777766654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.37  E-value=2.9e-06  Score=71.86  Aligned_cols=124  Identities=10%  Similarity=-0.160  Sum_probs=105.8

Q ss_pred             HHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHH
Q 045108          118 HSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESEL  197 (425)
Q Consensus       118 ~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~  197 (425)
                      ....++.++|++..++..+...+...   ..+.+++..+..++..+|+++.+|.....++...+.        +++.+..
T Consensus         6 ~l~~al~~~p~~~~~~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------~~~A~~~   74 (142)
T 2xcb_A            6 TLAMLRGLSEDTLEQLYALGFNQYQA---GKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL--------YEQALQS   74 (142)
T ss_dssp             ---CCTTCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHH
T ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHHH---ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhh--------HHHHHHH
Confidence            34556788999999999998888776   479999999999999999999999999999887765        6899999


Q ss_pred             HHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 045108          198 VEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRL  254 (425)
Q Consensus       198 ~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~l  254 (425)
                      +.++++.+|.|..+|.+...++..++.  +++.+..+++.+..+|.|-..+..+..+
T Consensus        75 ~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~  129 (142)
T 2xcb_A           75 YSYGALMDINEPRFPFHAAECHLQLGD--LDGAESGFYSARALAAAQPAHEALAARA  129 (142)
T ss_dssp             HHHHHHHCTTCTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred             HHHHHhcCCCCcHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence            999999999999999999999988876  7888999999999999887665544433

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.35  E-value=1.4e-05  Score=80.25  Aligned_cols=166  Identities=8%  Similarity=-0.081  Sum_probs=131.3

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++++.....++..+|++..+|.....++...   ..+++.+..+..++..+|.+..+|.....+....+.        +
T Consensus       320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------~  388 (514)
T 2gw1_A          320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRE---NKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKND--------F  388 (514)
T ss_dssp             TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTT---TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCC--------H
Confidence            34566667777777777777777666666555   467888888888888888888888888777776654        6


Q ss_pred             HHHHHHHHHHHHhcCCchh------hhhHHHHHHHh---hchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccc
Q 045108          192 ERESELVEKIAERSKMNYR------AWNHRCWLVSF---MTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGF  262 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~------AW~hR~wll~~---~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~  262 (425)
                      ++.+..+.++++.+|.+..      +|.....+...   .+.  +...+..+.+.+..+|.+..+|..+..+.... +  
T Consensus       389 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-g--  463 (514)
T 2gw1_A          389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN--FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQ-E--  463 (514)
T ss_dssp             HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-T--
T ss_pred             HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC--HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh-c--
Confidence            7888999999999999865      89999888877   665  78889999999999999999998888776653 1  


Q ss_pred             cccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 045108          263 CHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSL  310 (425)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~  310 (425)
                                       -+++.+.+..+++..+|++..+|....++..
T Consensus       464 -----------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  494 (514)
T 2gw1_A          464 -----------------DIDEAITLFEESADLARTMEEKLQAITFAEA  494 (514)
T ss_dssp             -----------------CHHHHHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred             -----------------CHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence                             2677788899999999999999988765543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.35  E-value=1.1e-05  Score=80.85  Aligned_cols=191  Identities=5%  Similarity=-0.149  Sum_probs=139.2

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++++.+...+|.++|++..++.....+...+......++.+..+..++..+|++..++......+..+....    ..+
T Consensus       154 y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~----~~~  229 (472)
T 4g1t_A          154 NERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEG----EEE  229 (472)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC----------
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhh----hHH
Confidence            4689999999999999999999888776543321134567788899999999999999998887776654321    235


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCC
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSS  271 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~  271 (425)
                      .+.+.++.++++.+|.+..+|...+.+....+.  +...+....+.++.+|.+..+++.+..+............ ....
T Consensus       230 ~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~-~~~~  306 (472)
T 4g1t_A          230 GEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE--PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLR-ENGM  306 (472)
T ss_dssp             CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc--hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHH-HHHH
Confidence            677889999999999999999999999888776  7889999999999999999999887766543211100000 0000


Q ss_pred             CchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 045108          272 GYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLS  309 (425)
Q Consensus       272 ~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll  309 (425)
                      +.........+..+....+++..+|.+..+|..+-.+.
T Consensus       307 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~  344 (472)
T 4g1t_A          307 YGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLH  344 (472)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHH
Confidence            01122234567778888899999999999998765443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.34  E-value=1.1e-05  Score=69.69  Aligned_cols=116  Identities=12%  Similarity=-0.037  Sum_probs=103.2

Q ss_pred             CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhc
Q 045108          126 SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS  205 (425)
Q Consensus       126 npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~  205 (425)
                      +++...+|..+..++...   ..+++++..+..++..+|++..+|..+..++..++.        +.+.+..+.++++.+
T Consensus         7 ~~~~a~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~   75 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMAR---KEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQ--------HEKAAEDAELATVVD   75 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC
T ss_pred             hhhhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhC
Confidence            456677888888888776   479999999999999999999999999999888765        689999999999999


Q ss_pred             CCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 045108          206 KMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRL  254 (425)
Q Consensus       206 pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~l  254 (425)
                      |.+..+|..+..+...++.  +.+.+..+.+.+..+|.|..+|..+...
T Consensus        76 p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~l~  122 (164)
T 3sz7_A           76 PKYSKAWSRLGLARFDMAD--YKGAKEAYEKGIEAEGNGGSDAMKRGLE  122 (164)
T ss_dssp             TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            9999999999999988876  7899999999999999999998777654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.29  E-value=0.00013  Score=67.44  Aligned_cols=179  Identities=10%  Similarity=-0.097  Sum_probs=130.9

Q ss_pred             hHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc---hhhhhHHHHHHHHHhhccc
Q 045108          112 AIEVMIHSKALLLLSCDF---ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS---EQAWSHRRWVINMISRNCS  185 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~---~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs---y~~W~hRrwll~~l~~~~~  185 (425)
                      .++++.....++..+|++   ..+|..+..+....+   .+.+++..+..++..+|++   ..++..+..+.........
T Consensus        31 ~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~  107 (261)
T 3qky_A           31 YDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNK---EYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYE  107 (261)
T ss_dssp             HHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTT
T ss_pred             HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhC---cHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccccc
Confidence            478999999999999999   899999999988874   8999999999999998865   4567777777665110000


Q ss_pred             hhHHhHHHHHHHHHHHHHhcCCchhhh-----------------hHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCh---
Q 045108          186 TLQWIIERESELVEKIAERSKMNYRAW-----------------NHRCWLVSFMTREQVLNELKQSRNWSGLHVADN---  245 (425)
Q Consensus       186 ~~~~~~~~EL~~~~~~l~~~pkNY~AW-----------------~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~---  245 (425)
                      .-...+.+.+..+.++++.+|.+-.++                 ...+.+....+.  +...+..+++.+..+|.+.   
T Consensus       108 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~  185 (261)
T 3qky_A          108 LDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERREL--YEAAAVTYEAVFDAYPDTPWAD  185 (261)
T ss_dssp             SCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTSTTHH
T ss_pred             ccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHCCCCchHH
Confidence            001237899999999999999998887                 455666555554  7899999999999999854   


Q ss_pred             hHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 045108          246 SCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHR  305 (425)
Q Consensus       246 SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yr  305 (425)
                      .++..+..+...+-..       ..   ......-+++.+....+++..+|++..+..-+
T Consensus       186 ~a~~~l~~~~~~~g~~-------~~---~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~  235 (261)
T 3qky_A          186 DALVGAMRAYIAYAEQ-------SV---RARQPERYRRAVELYERLLQIFPDSPLLRTAE  235 (261)
T ss_dssp             HHHHHHHHHHHHHHHT-------SC---GGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             HHHHHHHHHHHHhccc-------ch---hhcccchHHHHHHHHHHHHHHCCCChHHHHHH
Confidence            4666666665543110       00   00012357788999999999999987655443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.28  E-value=1.9e-06  Score=92.96  Aligned_cols=131  Identities=5%  Similarity=-0.196  Sum_probs=119.9

Q ss_pred             chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108          111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~  190 (425)
                      ..+++++....++.++|++..+|+.++.++...+   .+++++..+..++..+|+++.+|..+..++.++++        
T Consensus       448 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~--------  516 (681)
T 2pzi_A          448 DVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG---DYDSATKHFTEVLDTFPGELAPKLALAATAELAGN--------  516 (681)
T ss_dssp             CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC--------
T ss_pred             CHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC--------
Confidence            3578999999999999999999999999988874   79999999999999999999999999999988876        


Q ss_pred             HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 045108          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLM  255 (425)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll  255 (425)
                      +++ +..+.++++.+|.+..+|..+..++..++.  +++.++.+++.+..+|.+..+|..+..++
T Consensus       517 ~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~l~P~~~~a~~~~~~~~  578 (681)
T 2pzi_A          517 TDE-HKFYQTVWSTNDGVISAAFGLARARSAEGD--RVGAVRTLDEVPPTSRHFTTARLTSAVTL  578 (681)
T ss_dssp             CCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred             hHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCC--HHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence            356 889999999999999999999999988876  78999999999999999999998888775

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.27  E-value=4.3e-05  Score=77.48  Aligned_cols=177  Identities=7%  Similarity=-0.072  Sum_probs=141.0

Q ss_pred             chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108          111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~  190 (425)
                      ..++++.....++..+|++..+|..+..+....+   .+++++..+..++..+|++..+|.....+....+.        
T Consensus       291 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~--------  359 (537)
T 3fp2_A          291 NSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ---DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGK--------  359 (537)
T ss_dssp             CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTC--------
T ss_pred             CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------
Confidence            4578999999999999999999999999988774   78999999999999999999999999988887765        


Q ss_pred             HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHH------HHHHHhhccccc
Q 045108          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHR------RLMIWNLEGFCH  264 (425)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~------~ll~~l~~~~~~  264 (425)
                      +++.+.++.++++.+|.+..+|.....+....+.  +.+.+..+.+.+..+|.+...|....      .++......   
T Consensus       360 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---  434 (537)
T 3fp2_A          360 FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD--FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ---  434 (537)
T ss_dssp             HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhc---
Confidence            6889999999999999999999999999988775  78889999999998887766554332      233221000   


Q ss_pred             cCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 045108          265 IQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSL  310 (425)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~  310 (425)
                             +.......-+++.+.+..+++..+|.+..+|..+-.+..
T Consensus       435 -------~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  473 (537)
T 3fp2_A          435 -------DPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKL  473 (537)
T ss_dssp             -----------CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             -------cchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence                   000000134778899999999999999988877655443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.26  E-value=1.5e-05  Score=73.31  Aligned_cols=167  Identities=6%  Similarity=-0.134  Sum_probs=122.8

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHH-HHHHHHhhccchhHHh
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRR-WVINMISRNCSTLQWI  190 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRr-wll~~l~~~~~~~~~~  190 (425)
                      .++++.....++.++|++..+|.....+....+   .+++++..+..++..+|.+..+|..+. .+....         .
T Consensus        90 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~---------~  157 (272)
T 3u4t_A           90 DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG---NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK---------E  157 (272)
T ss_dssp             HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT---CHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT---------C
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcc---CHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH---------H
Confidence            478889999999999999999999998888774   789999999999999999999998888 444432         2


Q ss_pred             HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhh-HHHHHHHHHHHHhhc---CCCh-----hHHHHHHHHHHHhhcc
Q 045108          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ-VLNELKQSRNWSGLH---VADN-----SCFHYHRRLMIWNLEG  261 (425)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~-~~~EL~~~~~~i~~d---~~N~-----SaW~yR~~ll~~l~~~  261 (425)
                      +++.+..+.++++.+|.+..+|..+..+...++... +...+...++.+...   +...     .+|.+...+....   
T Consensus       158 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---  234 (272)
T 3u4t_A          158 YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN---  234 (272)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc---
Confidence            688889999999999999999999988887765411 223444555555443   4321     3555554444332   


Q ss_pred             ccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 045108          262 FCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSL  310 (425)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~  310 (425)
                                       .-+++.+++..+++..+|+|..+|-....+..
T Consensus       235 -----------------~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~  266 (272)
T 3u4t_A          235 -----------------RDKVKADAAWKNILALDPTNKKAIDGLKMKLE  266 (272)
T ss_dssp             -----------------TCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred             -----------------CCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence                             12678899999999999999999887665543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.22  E-value=9.2e-05  Score=74.27  Aligned_cols=165  Identities=8%  Similarity=0.006  Sum_probs=138.6

Q ss_pred             chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108          111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~  190 (425)
                      ..++++.....++..+|+ ..+|..+..+....+   .+.+.+..+..++..+|++..+|..+..+....+.        
T Consensus       252 ~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------  319 (514)
T 2gw1_A          252 DPLGAHEDIKKAIELFPR-VNSYIYMALIMADRN---DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN--------  319 (514)
T ss_dssp             CHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSS---CCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC--------
T ss_pred             CHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCC---CHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC--------
Confidence            357889999999999999 999999998888774   67889999999999999999999999888887665        


Q ss_pred             HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCC
Q 045108          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNS  270 (425)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~  270 (425)
                      +++.+..+.++++.+|.+..+|.....+....+.  +...+..+.+.+..+|.+..+|..+..+.... +          
T Consensus       320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~----------  386 (514)
T 2gw1_A          320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENK--FDDCETLFSEAKRKFPEAPEVPNFFAEILTDK-N----------  386 (514)
T ss_dssp             TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTC--HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHT-T----------
T ss_pred             HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHC-C----------
Confidence            5788899999999999999999999888877665  78899999999999999999999888777653 1          


Q ss_pred             CCchhhhhHHHHHHHHHHHHHHhhcCCCcc------HHHHHHHHH
Q 045108          271 SGYFVETYQVWKEELDWNESLIKRYVGREA------LWLHRRFLS  309 (425)
Q Consensus       271 ~~~~~~~~~~~~~EL~~~~~~I~~~p~neS------aW~yrr~Ll  309 (425)
                               .+++.+.+..+++..+|.+..      +|..+..+.
T Consensus       387 ---------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~  422 (514)
T 2gw1_A          387 ---------DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLL  422 (514)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHH
T ss_pred             ---------CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence                     256778888888888998876      666654433

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.20  E-value=0.00011  Score=66.41  Aligned_cols=114  Identities=3%  Similarity=-0.064  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhH----------------HHHHHHHHhhccchhHHhHHHH
Q 045108          131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSH----------------RRWVINMISRNCSTLQWIIERE  194 (425)
Q Consensus       131 TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~h----------------Rrwll~~l~~~~~~~~~~~~~E  194 (425)
                      ..+..+...+...   ..+.+++..+..++..+|++..+|.+                +..++...+.        +++.
T Consensus         5 ~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--------~~~A   73 (208)
T 3urz_A            5 DEMLQKVSAAIEA---GQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN--------YDKA   73 (208)
T ss_dssp             HHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC--------HHHH
T ss_pred             HHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC--------HHHH
Confidence            3444555555555   47899999999999999999999999                7777776654        6899


Q ss_pred             HHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 045108          195 SELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIW  257 (425)
Q Consensus       195 L~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~  257 (425)
                      +..+.++++.+|.+..+|..++.+....+.  +++.+..+++.+..+|.|..+|..+..++..
T Consensus        74 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~  134 (208)
T 3urz_A           74 YLFYKELLQKAPNNVDCLEACAEMQVCRGQ--EKDALRMYEKILQLEADNLAANIFLGNYYYL  134 (208)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999988776  7899999999999999999999999877643

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.20  E-value=0.00022  Score=71.23  Aligned_cols=171  Identities=6%  Similarity=-0.133  Sum_probs=131.9

Q ss_pred             hHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhc
Q 045108          112 AIEVMIHSKALLLLS--------CDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRN  183 (425)
Q Consensus       112 ~~~~L~~t~~lLl~n--------pe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~  183 (425)
                      .++++....+++.++        +++..+.+.++..+...+ ...+++++.+...++..+|+++.+|.....+..++...
T Consensus       110 ~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~  188 (472)
T 4g1t_A          110 LSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCG-GNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNW  188 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHC-TTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHc-cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc
Confidence            467788888888774        355677777776665543 34689999999999999999999998888777666543


Q ss_pred             cchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhch--hhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhcc
Q 045108          184 CSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR--EQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEG  261 (425)
Q Consensus       184 ~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~--~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~  261 (425)
                      ..     .++.++.+.++++.+|.+..++......+..+..  ....+.+..+++.+..+|.+..+|..+..+.... + 
T Consensus       189 ~~-----~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~-~-  261 (472)
T 4g1t_A          189 PP-----SQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRK-D-  261 (472)
T ss_dssp             CC-----CCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT-T-
T ss_pred             hH-----HHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHc-C-
Confidence            21     2456788899999999999999998887766543  2356778899999999999999999988877653 1 


Q ss_pred             ccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 045108          262 FCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFL  308 (425)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~L  308 (425)
                                        .+.+.+.+..+++..+|.+..+|+.+..+
T Consensus       262 ------------------~~~~A~~~~~~al~~~p~~~~~~~~lg~~  290 (472)
T 4g1t_A          262 ------------------EPDKAIELLKKALEYIPNNAYLHCQIGCC  290 (472)
T ss_dssp             ------------------CHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             ------------------chHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence                              26777888899999999999988876444

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.18  E-value=7.8e-06  Score=71.37  Aligned_cols=114  Identities=7%  Similarity=-0.111  Sum_probs=100.5

Q ss_pred             HHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHH
Q 045108          156 SAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSR  235 (425)
Q Consensus       156 ~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~  235 (425)
                      +..++..+|++..+|.....++.+.+.        +++.+.++.++++.+|.|..+|...+.++..++.  +++.+..++
T Consensus        25 l~~al~l~p~~~~~~~~lg~~~~~~g~--------~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~--~~~Ai~~~~   94 (151)
T 3gyz_A           25 LKDINAIPDDMMDDIYSYAYDFYNKGR--------IEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ--FQQAADLYA   94 (151)
T ss_dssp             TGGGCCSCHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc--HHHHHHHHH
Confidence            356778899999999999999887765        7899999999999999999999999999988876  789999999


Q ss_pred             HHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCc
Q 045108          236 NWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGRE  299 (425)
Q Consensus       236 ~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~ne  299 (425)
                      +.+..+|.|..+|.++..++..+ +                   -+++.+....+++..+|+..
T Consensus        95 ~al~l~P~~~~~~~~lg~~~~~l-g-------------------~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           95 VAFALGKNDYTPVFHTGQCQLRL-K-------------------APLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHSSSCCHHHHHHHHHHHHT-T-------------------CHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHhhCCCCcHHHHHHHHHHHHc-C-------------------CHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999888764 2                   16778888899999998764

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.14  E-value=4.7e-05  Score=65.40  Aligned_cols=123  Identities=5%  Similarity=-0.140  Sum_probs=104.2

Q ss_pred             HHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHH
Q 045108          155 LSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQS  234 (425)
Q Consensus       155 ~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~  234 (425)
                      .+..++..+|++..+|..+..++...+.        +.+.+..+.++++.+|.|..+|..++.+....+.  +++.+..+
T Consensus         9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~   78 (148)
T 2vgx_A            9 TIAMLNEISSDTLEQLYSLAFNQYQSGX--------YEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ--YDLAIHSY   78 (148)
T ss_dssp             SHHHHTTCCHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHH
T ss_pred             hHHHHHcCCHhhHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhh--HHHHHHHH
Confidence            3567888999999999998888777654        6899999999999999999999999999988776  78999999


Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHH
Q 045108          235 RNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRF  307 (425)
Q Consensus       235 ~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~  307 (425)
                      ++.+..+|.|..+|.++..++..+ +                   -+++.+.+..+++..+|.+......+..
T Consensus        79 ~~al~l~p~~~~~~~~lg~~~~~~-g-------------------~~~~A~~~~~~al~~~p~~~~~~~~~~~  131 (148)
T 2vgx_A           79 SYGAVMDIXEPRFPFHAAECLLQX-G-------------------ELAEAESGLFLAQELIANXPEFXELSTR  131 (148)
T ss_dssp             HHHHHHSTTCTHHHHHHHHHHHHT-T-------------------CHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHhcCCCCchHHHHHHHHHHHc-C-------------------CHHHHHHHHHHHHHHCcCCCcchHHHHH
Confidence            999999999999999998887664 2                   1567788889999999988776555433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.13  E-value=3.1e-05  Score=67.26  Aligned_cols=127  Identities=6%  Similarity=-0.049  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHH-HHHHhhccchhHHhH
Q 045108          113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWV-INMISRNCSTLQWII  191 (425)
Q Consensus       113 ~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwl-l~~l~~~~~~~~~~~  191 (425)
                      ++++.....++..+|++..+|.....+....+   .+.+++.....++..+|.++.+|.....+ ....+..      ..
T Consensus        27 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~------~~   97 (177)
T 2e2e_A           27 EAQLQALQDKIRANPQNSEQWALLGEYYLWQN---DYSNSLLAYRQALQLRGENAELYAALATVLYYQASQH------MT   97 (177)
T ss_dssp             CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC------CC
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCc------ch
Confidence            45677888999999999999999999888774   78999999999999999999999988887 4444331      01


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHH
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHY  250 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~y  250 (425)
                      .+.+..+.++++.+|.+..+|.....+....+.  +...+..+.+.+..+|.|...+..
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~  154 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFMQAN--YAQAIELWQKVMDLNSPRINRTQL  154 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc--HHHHHHHHHHHHhhCCCCccHHHH
Confidence            788899999999999999999999888877765  788999999999999998765433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.12  E-value=0.0006  Score=62.31  Aligned_cols=128  Identities=7%  Similarity=-0.084  Sum_probs=103.4

Q ss_pred             chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108          111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~  190 (425)
                      ..++++.....++.++|++..+|.....+....   ..+++++.++..++..+|++..+|.....++...+.        
T Consensus        58 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--------  126 (275)
T 1xnf_A           58 LRALARNDFSQALAIRPDMPEVFNYLGIYLTQA---GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR--------  126 (275)
T ss_dssp             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC--------
T ss_pred             cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhcc--------
Confidence            347889999999999999999999999888877   478999999999999999999999999988887664        


Q ss_pred             HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHH
Q 045108          191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHR  252 (425)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~  252 (425)
                      +++.+.++.++++.+|.+..+......+.. .  ..+.+.+..+.+.+..++.+...|....
T Consensus       127 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~  185 (275)
T 1xnf_A          127 DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ-K--LDEKQAKEVLKQHFEKSDKEQWGWNIVE  185 (275)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-H--HCHHHHHHHHHHHHHHSCCCSTHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHH-h--cCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence            688889999999999998765544443322 1  2467788888888888888877765433

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.10  E-value=9.3e-05  Score=59.27  Aligned_cols=121  Identities=6%  Similarity=-0.027  Sum_probs=102.5

Q ss_pred             hCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHh
Q 045108          125 LSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAER  204 (425)
Q Consensus       125 ~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~  204 (425)
                      .+|....+|.....+....   ..+.+.+.+...++..+|++..+|..+..+....+.        +.+.+.++.++++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~   75 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKV---ENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGN--------YAGAVQDCERAICI   75 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHHc---cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhc--------hHHHHHHHHHHHhc
Confidence            3456677777777777666   478999999999999999999999999888877654        68889999999999


Q ss_pred             cCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108          205 SKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWN  258 (425)
Q Consensus       205 ~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l  258 (425)
                      +|.+..+|.....+....+.  +...+....+.+..+|.+..+|.....+...+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  127 (131)
T 2vyi_A           76 DPAYSKAYGRMGLALSSLNK--HVEAVAYYKKALELDPDNETYKSNLKIAELKL  127 (131)
T ss_dssp             CTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            99999999999998887765  78889999999999999999988877776553

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.09  E-value=6.5e-05  Score=60.82  Aligned_cols=119  Identities=10%  Similarity=0.059  Sum_probs=101.1

Q ss_pred             CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhc
Q 045108          126 SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS  205 (425)
Q Consensus       126 npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~  205 (425)
                      .|.+..+|..+..+....+   .+++++..+..++..+|++..+|..+..+....+.        +++.+.++.++++.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~a~~~~   80 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKG---DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE--------FQLALKDCEECIQLE   80 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTT---CSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTC--------HHHHHHHHHHHHHHC
T ss_pred             CcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHhC
Confidence            4677888888888877763   67999999999999999999999888887765543        688899999999999


Q ss_pred             CCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 045108          206 KMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIW  257 (425)
Q Consensus       206 pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~  257 (425)
                      |.+..+|.....+...++.  +.+.+....+.+..+|.+..+|.....+...
T Consensus        81 ~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  130 (133)
T 2lni_A           81 PTFIKGYTRKAAALEAMKD--YTKAMDVYQKALDLDSSCKEAADGYQRCMMA  130 (133)
T ss_dssp             TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhh--HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            9999999999998887765  7888999999999999998888877766543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.08  E-value=4.5e-05  Score=74.75  Aligned_cols=131  Identities=8%  Similarity=-0.148  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc---------------hhhhhHHHHHHHH
Q 045108          115 VMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS---------------EQAWSHRRWVINM  179 (425)
Q Consensus       115 ~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs---------------y~~W~hRrwll~~  179 (425)
                      ++.....++..+|++..+|+.+..++...+   .+.+++..+..++..+|.+               ..+|..+..++.+
T Consensus       132 A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g---~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~  208 (336)
T 1p5q_A          132 AKESWEMNSEEKLEQSTIVKERGTVYFKEG---KYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK  208 (336)
T ss_dssp             CCCGGGCCHHHHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhcCCHHHHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444556667889999999999999888774   7999999999999999999               5899999988888


Q ss_pred             HhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108          180 ISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWN  258 (425)
Q Consensus       180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l  258 (425)
                      ++.        +.+.+..+.++++.+|.|..+|..+..++..++.  +++.+..+++.+..+|.|..+|..+..+...+
T Consensus       209 ~g~--------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~  277 (336)
T 1p5q_A          209 LQA--------FSAAIESCNKALELDSNNEKGLSRRGEAHLAVND--FELARADFQKVLQLYPNNKAAKTQLAVCQQRI  277 (336)
T ss_dssp             TTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred             cCC--------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence            765        7899999999999999999999999999988876  78999999999999999999999888877664

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.07  E-value=3.1e-05  Score=79.26  Aligned_cols=132  Identities=7%  Similarity=-0.098  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc---------------hhhhhHHHHHHH
Q 045108          114 EVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS---------------EQAWSHRRWVIN  178 (425)
Q Consensus       114 ~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs---------------y~~W~hRrwll~  178 (425)
                      ++++.....+..+|++..+|+.+...+...   ..+.+++.....++..+|.+               ..+|..+..++.
T Consensus       252 ~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~---g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~  328 (457)
T 1kt0_A          252 KAKESWEMDTKEKLEQAAIVKEKGTVYFKG---GKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL  328 (457)
T ss_dssp             CCCCGGGSCHHHHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcchhhcCHHHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455666788899999999999988887   48999999999999999999               689999999988


Q ss_pred             HHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108          179 MISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWN  258 (425)
Q Consensus       179 ~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l  258 (425)
                      ++..        +.+.+..+.++++.+|.|..+|..|..++..++.  +++.+..+.+.+..+|.|..+|..+..+...+
T Consensus       329 ~~g~--------~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~--~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~  398 (457)
T 1kt0_A          329 KLRE--------YTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE--FESAKGDFEKVLEVNPQNKAARLQISMCQKKA  398 (457)
T ss_dssp             HTTC--------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTC----CHHHHHHHHHHHH
T ss_pred             HhcC--------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            8765        7899999999999999999999999999988775  78999999999999999999999988877664

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.06  E-value=0.00019  Score=74.03  Aligned_cols=162  Identities=8%  Similarity=-0.020  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHc-------cCCcccHH-------HHHHHHHHHHh-hCCCchhhhhHHHHHH
Q 045108          113 IEVMIHSKALLLLSCDFATAWNSRKLIVSN-------KQLLPILM-------DELRLSAVVLS-HSPKSEQAWSHRRWVI  177 (425)
Q Consensus       113 ~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~-------~~~~~~l~-------~EL~~~~~lL~-~~PKsy~~W~hRrwll  177 (425)
                      .+++...+.+|..+|.+..+|.....++..       .+   .++       +.+..+..++. .+|++..+|....-+.
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g---~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~  331 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKG---DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE  331 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT---CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhcc---chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            467889999999999999999999988874       32   344       78999999997 8999999999988887


Q ss_pred             HHHhhccchhHHhHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 045108          178 NMISRNCSTLQWIIERESELVEKIAERSKMNY-RAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMI  256 (425)
Q Consensus       178 ~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY-~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~  256 (425)
                      ...+.        +++...+..++++.+|.+. .+|.....+..+.+.  ++...+.+.+.+...|.+.+.|.-...+..
T Consensus       332 ~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~  401 (530)
T 2ooe_A          332 ESRMK--------YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG--IKSGRMIFKKAREDARTRHHVYVTAALMEY  401 (530)
T ss_dssp             HHTTC--------HHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHTCTTCCTHHHHHHHHHHH
T ss_pred             HhcCC--------HHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC--HHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            76654        6788899999999999996 589988877766554  678899999999998887776654333321


Q ss_pred             HhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 045108          257 WNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRR  306 (425)
Q Consensus       257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr  306 (425)
                      ...+                   -.++......+++..+|++..+|...-
T Consensus       402 ~~~~-------------------~~~~A~~~~e~al~~~p~~~~~~~~~~  432 (530)
T 2ooe_A          402 YCSK-------------------DKSVAFKIFELGLKKYGDIPEYVLAYI  432 (530)
T ss_dssp             HHTC-------------------CHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHcC-------------------ChhHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            1111                   145667777888889999999996643

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.04  E-value=0.00036  Score=66.83  Aligned_cols=158  Identities=6%  Similarity=-0.136  Sum_probs=123.5

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .+++++....     |++..++..+..++...+   ..++++..+..++..+|++...-....|+-.....      ..+
T Consensus       117 ~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g---~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~------~~~  182 (291)
T 3mkr_A          117 PDAALRTLHQ-----GDSLECMAMTVQILLKLD---RLDLARKELKKMQDQDEDATLTQLATAWVSLAAGG------EKL  182 (291)
T ss_dssp             HHHHHHHHTT-----CCSHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCT------THH
T ss_pred             HHHHHHHHhC-----CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCc------hHH
Confidence            4556665555     899999999999988874   78999999999999999986433333333222211      237


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCC
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSS  271 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~  271 (425)
                      ++.+.+..++++.+|.+-.+|..+..+...++.  +++..+.+.+.+..+|.|-.+|.++..+.... +.          
T Consensus       183 ~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~-g~----------  249 (291)
T 3mkr_A          183 QDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR--WEAAEGVLQEALDKDSGHPETLINLVVLSQHL-GK----------  249 (291)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TC----------
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CC----------
Confidence            899999999999999999999999999988886  78999999999999999999999998777653 21          


Q ss_pred             CchhhhhHHHHHHHHHHHHHHhhcCCCccHHHH
Q 045108          272 GYFVETYQVWKEELDWNESLIKRYVGREALWLH  304 (425)
Q Consensus       272 ~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~y  304 (425)
                              ..+....+..+++..+|+|..+-.+
T Consensus       250 --------~~eaa~~~~~~~~~~~P~~~~~~d~  274 (291)
T 3mkr_A          250 --------PPEVTNRYLSQLKDAHRSHPFIKEY  274 (291)
T ss_dssp             --------CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             --------CHHHHHHHHHHHHHhCCCChHHHHH
Confidence                    0122357788999999999876554

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.03  E-value=0.00012  Score=60.12  Aligned_cols=119  Identities=8%  Similarity=-0.075  Sum_probs=99.3

Q ss_pred             HhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHH
Q 045108          124 LLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAE  203 (425)
Q Consensus       124 l~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~  203 (425)
                      ..+|....+|.....+....   ..+++.+.....++..+|++..+|..+..++..++.        +.+.+..+.++++
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~al~   71 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVG---RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ--------PEQALADCRRALE   71 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHh---CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHH
Confidence            35788889999998888877   479999999999999999999999999999887765        6889999999999


Q ss_pred             hcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCC-----ChhHHHHHHHHH
Q 045108          204 RSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVA-----DNSCFHYHRRLM  255 (425)
Q Consensus       204 ~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~-----N~SaW~yR~~ll  255 (425)
                      .+|.+..+|...+.+...++.  +...+..+.+.+..+|.     +...+.....+.
T Consensus        72 ~~p~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~  126 (137)
T 3q49_B           72 LDGQSVKAHFFLGQCQLEMES--YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK  126 (137)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred             hCchhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence            999999999999999988775  78889999999998887     455555544443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.02  E-value=4.9e-05  Score=64.15  Aligned_cols=124  Identities=5%  Similarity=-0.160  Sum_probs=101.8

Q ss_pred             HHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHH
Q 045108          155 LSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQS  234 (425)
Q Consensus       155 ~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~  234 (425)
                      .+..++..+|++..+|.....++.+.+.        +.+.+..+.++++.+|.|..+|...+.+....+.  +++.+..+
T Consensus         6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~   75 (142)
T 2xcb_A            6 TLAMLRGLSEDTLEQLYALGFNQYQAGK--------WDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL--YEQALQSY   75 (142)
T ss_dssp             ---CCTTCCHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHH
T ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHHHcc--------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhh--HHHHHHHH
Confidence            4456677889999999888877776554        6899999999999999999999999999988775  78999999


Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 045108          235 RNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFL  308 (425)
Q Consensus       235 ~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~L  308 (425)
                      ++.+..+|.|..+|.++..++..+ +                   -+++.+.+..+++..+|.+...+..+..+
T Consensus        76 ~~al~~~p~~~~~~~~lg~~~~~~-g-------------------~~~~A~~~~~~al~~~p~~~~~~~~~~~~  129 (142)
T 2xcb_A           76 SYGALMDINEPRFPFHAAECHLQL-G-------------------DLDGAESGFYSARALAAAQPAHEALAARA  129 (142)
T ss_dssp             HHHHHHCTTCTHHHHHHHHHHHHT-T-------------------CHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred             HHHHhcCCCCcHHHHHHHHHHHHc-C-------------------CHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence            999999999999999988887664 2                   15677888889999999988776654443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.00  E-value=0.0021  Score=59.27  Aligned_cols=158  Identities=8%  Similarity=-0.079  Sum_probs=118.6

Q ss_pred             HHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc---hhhhhHHHHHHHHHhhccchhHHhHHHHHHHHH
Q 045108          123 LLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS---EQAWSHRRWVINMISRNCSTLQWIIERESELVE  199 (425)
Q Consensus       123 Ll~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs---y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~  199 (425)
                      ..++|....++..+...+...   +.+.+++..+..++..+|.+   ..+|..+..+..+.+.        +.+.+..+.
T Consensus         8 ~~~~~~~~~~~~~~a~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~--------~~~A~~~~~   76 (261)
T 3qky_A            8 GRLRHSSPQEAFERAMEFYNQ---GKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKE--------YLLAASEYE   76 (261)
T ss_dssp             ---CCSSHHHHHHHHHHHHHT---TCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTC--------HHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCc--------HHHHHHHHH
Confidence            356888999999998888776   47999999999999999999   8899999888887765        789999999


Q ss_pred             HHHHhcCCc---hhhhhHHHHHHHh--------hchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHH-------------
Q 045108          200 KIAERSKMN---YRAWNHRCWLVSF--------MTREQVLNELKQSRNWSGLHVADNSCFHYHRRLM-------------  255 (425)
Q Consensus       200 ~~l~~~pkN---Y~AW~hR~wll~~--------~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll-------------  255 (425)
                      ++++.+|.+   ..++...+.+...        .+  .+.+.+...++.+..+|.+..++.-+..+.             
T Consensus        77 ~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~l  154 (261)
T 3qky_A           77 RFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQT--DTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEA  154 (261)
T ss_dssp             HHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCH--HHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCchhHHHHHHHHHHHHHhcccccccch--hHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998855   4577778877766        33  478999999999999999988774442221             


Q ss_pred             HHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCcc---HHHHHHHHH
Q 045108          256 IWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREA---LWLHRRFLS  309 (425)
Q Consensus       256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neS---aW~yrr~Ll  309 (425)
                      -.+..                ...-+++.+....++|..+|++..   +|..+-.+.
T Consensus       155 a~~~~----------------~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~  195 (261)
T 3qky_A          155 ARLYE----------------RRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAY  195 (261)
T ss_dssp             HHHHH----------------HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred             HHHHH----------------HccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence            01000                011367888999999999998654   555543333

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.99  E-value=0.00038  Score=59.08  Aligned_cols=146  Identities=8%  Similarity=-0.066  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCch
Q 045108          130 ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNY  209 (425)
Q Consensus       130 ~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY  209 (425)
                      ..+|..+..+....   ..+++.+..+..++..+|++..+|.....+....+.        +++.+.++.++++.+|.+.
T Consensus         8 ~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~   76 (186)
T 3as5_A            8 QVYYRDKGISHAKA---GRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGA--------VDRGTELLERSLADAPDNV   76 (186)
T ss_dssp             HHHHHHHHHHHHHH---TCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCH
T ss_pred             hHHHHHHHHHHHHh---cCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcCCCCH
Confidence            34555666666655   478999999999999999999999888888776554        6888999999999999999


Q ss_pred             hhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHH
Q 045108          210 RAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNE  289 (425)
Q Consensus       210 ~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~  289 (425)
                      .+|.....+....+.  +.+.++..++.+..+|.+..+|..+..+.... +                   -+++.+.+..
T Consensus        77 ~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~-------------------~~~~A~~~~~  134 (186)
T 3as5_A           77 KVATVLGLTYVQVQK--YDLAVPLLIKVAEANPINFNVRFRLGVALDNL-G-------------------RFDEAIDSFK  134 (186)
T ss_dssp             HHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-T-------------------CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHc-C-------------------cHHHHHHHHH
Confidence            999999888877665  78889999999999999999888877766543 1                   2567788888


Q ss_pred             HHHhhcCCCccHHHHHHHH
Q 045108          290 SLIKRYVGREALWLHRRFL  308 (425)
Q Consensus       290 ~~I~~~p~neSaW~yrr~L  308 (425)
                      +++..+|.+..+|...-.+
T Consensus       135 ~~~~~~~~~~~~~~~la~~  153 (186)
T 3as5_A          135 IALGLRPNEGKVHRAIAFS  153 (186)
T ss_dssp             HHHHHCTTCHHHHHHHHHH
T ss_pred             HHHhcCccchHHHHHHHHH
Confidence            9999999987777654333

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.99  E-value=6.7e-05  Score=64.61  Aligned_cols=97  Identities=13%  Similarity=-0.020  Sum_probs=88.2

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++++.....+|.++|++..+|..+..++...+   .+++++..+..++..+|++..+|..+..++..++.        +
T Consensus        27 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------~   95 (164)
T 3sz7_A           27 YSKAIDLYTQALSIAPANPIYLSNRAAAYSASG---QHEKAAEDAELATVVDPKYSKAWSRLGLARFDMAD--------Y   95 (164)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC--------H
Confidence            478999999999999999999999999998874   79999999999999999999999999999988765        6


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHH
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLV  219 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll  219 (425)
                      ++.+..+.++++.+|.|..+|..+....
T Consensus        96 ~~A~~~~~~al~~~p~~~~~~~~~~l~~  123 (164)
T 3sz7_A           96 KGAKEAYEKGIEAEGNGGSDAMKRGLET  123 (164)
T ss_dssp             HHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            8999999999999999999987776543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.99  E-value=0.00011  Score=60.19  Aligned_cols=98  Identities=5%  Similarity=-0.010  Sum_probs=87.1

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++++.....+|.++|++..+|..+..+....+   .+++++..+..++..+|++..+|..+..++..++.        +
T Consensus        20 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--------~   88 (126)
T 3upv_A           20 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM---SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE--------Y   88 (126)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhC--------H
Confidence            478999999999999999999999999998874   79999999999999999999999999999988765        6


Q ss_pred             HHHHHHHHHHHHhc------CCchhhhhHHHHHHH
Q 045108          192 ERESELVEKIAERS------KMNYRAWNHRCWLVS  220 (425)
Q Consensus       192 ~~EL~~~~~~l~~~------pkNY~AW~hR~wll~  220 (425)
                      ++.+..+.++++.+      |.|-.++....-+..
T Consensus        89 ~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           89 ASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence            88999999999999      888877776555443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.98  E-value=3.8e-05  Score=68.08  Aligned_cols=112  Identities=7%  Similarity=-0.047  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCC-------chh-----hhhHHHHHHHHHhhccchhHHhHHHHHHH
Q 045108          130 ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPK-------SEQ-----AWSHRRWVINMISRNCSTLQWIIERESEL  197 (425)
Q Consensus       130 ~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PK-------sy~-----~W~hRrwll~~l~~~~~~~~~~~~~EL~~  197 (425)
                      ...|..++..+...   +.+++++...+++|..+|.       +..     +|+.|.-++..++.        +++.+..
T Consensus        11 a~~~~~~G~~l~~~---g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr--------~~eAl~~   79 (159)
T 2hr2_A           11 AYLALSDAQRQLVA---GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS--------FDEALHS   79 (159)
T ss_dssp             HHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHC---CCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC--------HHHHHHH
Confidence            45566677777766   4899999999999999999       444     99999999999876        6888889


Q ss_pred             HHHHHHh-------cCCchhhh----hHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 045108          198 VEKIAER-------SKMNYRAW----NHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRL  254 (425)
Q Consensus       198 ~~~~l~~-------~pkNY~AW----~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~l  254 (425)
                      +.++++.       +|.+..+|    ..|+.++..++.  +++.+..+++.++.+|.|-....-+.-+
T Consensus        80 ~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr--~eEAl~~y~kAlel~p~d~~~~~~~~~~  145 (159)
T 2hr2_A           80 ADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGR--GAEAMPEFKKVVEMIEERKGETPGKERM  145 (159)
T ss_dssp             HHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred             HHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCC--HHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            9999999       99999999    999999999987  7899999999999888776554444333

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.97  E-value=0.00034  Score=54.87  Aligned_cols=112  Identities=8%  Similarity=0.017  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCch
Q 045108          130 ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNY  209 (425)
Q Consensus       130 ~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY  209 (425)
                      ..+|.....+....   ..+++.+.++..++..+|.+..+|.....+....+.        +.+.+..+.++++.+|.+.
T Consensus         4 ~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~~~~~   72 (118)
T 1elw_A            4 VNELKEKGNKALSV---GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD--------YQKAYEDGCKTVDLKPDWG   72 (118)
T ss_dssp             HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhcc--------HHHHHHHHHHHHHhCcccH
Confidence            45666666666655   478999999999999999999999988888776654        6888899999999999999


Q ss_pred             hhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 045108          210 RAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRL  254 (425)
Q Consensus       210 ~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~l  254 (425)
                      .+|.....+....+.  +.+.+....+.+..+|.+..+|.....+
T Consensus        73 ~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           73 KGYSRKAAALEFLNR--FEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             HHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh--HHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            999999988887765  7788999999999999998888776544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.95  E-value=5e-05  Score=59.38  Aligned_cols=108  Identities=7%  Similarity=0.114  Sum_probs=94.1

Q ss_pred             hCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHh
Q 045108          125 LSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAER  204 (425)
Q Consensus       125 ~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~  204 (425)
                      ++|++..+|..+..+....   ..+.+++.....++..+|++..+|..+..+....+.        +++.+.++.++++.
T Consensus         1 l~p~~~~~~~~~~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~a~~~   69 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDA---GNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLER--------YEEAVDCYNYVINV   69 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSS---CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHT
T ss_pred             CCCCcHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHh
Confidence            4788889999888888776   478999999999999999999999988888877654        68889999999999


Q ss_pred             cCC--chhhhhHHHHHHHhh-chhhHHHHHHHHHHHHhhcCCCh
Q 045108          205 SKM--NYRAWNHRCWLVSFM-TREQVLNELKQSRNWSGLHVADN  245 (425)
Q Consensus       205 ~pk--NY~AW~hR~wll~~~-~~~~~~~EL~~~~~~i~~d~~N~  245 (425)
                      +|.  +..+|.....+...+ +.  +++.++++.+.+..+|.+.
T Consensus        70 ~~~~~~~~~~~~l~~~~~~~~~~--~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           70 IEDEYNKDVWAAKADALRYIEGK--EVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             SCCTTCHHHHHHHHHHHTTCSSC--SHHHHHHHHHHGGGCCCCC
T ss_pred             CcccchHHHHHHHHHHHHHHhCC--HHHHHHHHHHHhhcccCCC
Confidence            999  999999999988877 65  6788999999999988764

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.94  E-value=0.00013  Score=63.15  Aligned_cols=133  Identities=5%  Similarity=-0.069  Sum_probs=106.9

Q ss_pred             ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHH-HHhhchh
Q 045108          147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWL-VSFMTRE  225 (425)
Q Consensus       147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wl-l~~~~~~  225 (425)
                      ..+++++..+..++..+|.+..+|.....+....+.        +.+.+.+..++++.+|.|..+|.....+ ....+..
T Consensus        24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~   95 (177)
T 2e2e_A           24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQND--------YSNSLLAYRQALQLRGENAELYAALATVLYYQASQH   95 (177)
T ss_dssp             ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCc
Confidence            356777889999999999999999999888877654        6889999999999999999999999888 4444441


Q ss_pred             hHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 045108          226 QVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHR  305 (425)
Q Consensus       226 ~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yr  305 (425)
                      ...+.+..+.+.+..+|.+..+|..+..+.... +                   -+++.+.+..+++..+|.+...+...
T Consensus        96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-------------------~~~~A~~~~~~al~~~p~~~~~~~~~  155 (177)
T 2e2e_A           96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQ-A-------------------NYAQAIELWQKVMDLNSPRINRTQLV  155 (177)
T ss_dssp             CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-T-------------------CHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-c-------------------cHHHHHHHHHHHHhhCCCCccHHHHH
Confidence            127889999999999999999998888776653 1                   26778888999999999998766554


Q ss_pred             HH
Q 045108          306 RF  307 (425)
Q Consensus       306 r~  307 (425)
                      ..
T Consensus       156 ~~  157 (177)
T 2e2e_A          156 ES  157 (177)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.93  E-value=0.00033  Score=57.79  Aligned_cols=118  Identities=8%  Similarity=-0.018  Sum_probs=101.5

Q ss_pred             HhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc---hhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHH
Q 045108          124 LLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS---EQAWSHRRWVINMISRNCSTLQWIIERESELVEK  200 (425)
Q Consensus       124 l~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs---y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~  200 (425)
                      ..+|....+|..+.......   ..+.+.+.....++..+|.+   ..+|..+..+......        +++.+..+.+
T Consensus        22 ~~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~   90 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELFKC---GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLED--------YDKAETEASK   90 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHHTT---TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHcc--------HHHHHHHHHH
Confidence            45788889999888888776   47899999999999999998   8888888888776654        6889999999


Q ss_pred             HHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 045108          201 IAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRL  254 (425)
Q Consensus       201 ~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~l  254 (425)
                      +++.+|.+..+|..+..+...++.  +++.+..+.+.+..+|.|..+|.....+
T Consensus        91 ~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (148)
T 2dba_A           91 AIEKDGGDVKALYRRSQALEKLGR--LDQAVLDLQRCVSLEPKNKVFQEALRNI  142 (148)
T ss_dssp             HHHHTSCCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHhhCccCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            999999999999999999888775  7888999999999999999888765544

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.93  E-value=0.00017  Score=75.12  Aligned_cols=127  Identities=9%  Similarity=-0.107  Sum_probs=114.8

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .+++++....++.++|++..+|.....++...+   .+++++..+..++..+|++..+|.....++...++        +
T Consensus        39 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--------~  107 (568)
T 2vsy_A           39 TTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQ---RHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQ--------A  107 (568)
T ss_dssp             HHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--------H
Confidence            478999999999999999999999999988874   78999999999999999999999999988887765        6


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhh---chhhHHHHHHHHHHHHhhcCCChhHHHHH
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFM---TREQVLNELKQSRNWSGLHVADNSCFHYH  251 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~---~~~~~~~EL~~~~~~i~~d~~N~SaW~yR  251 (425)
                      ++.++.+.++++.+|.+..+|.....+...+   +.  .++.++.+.+.+..+|.+.++|...
T Consensus       108 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l  168 (568)
T 2vsy_A          108 EAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA--LDVLSAQVRAAVAQGVGAVEPFAFL  168 (568)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT--HHHHHHHHHHHHHHTCCCSCHHHHT
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc--HHHHHHHHHHHHhcCCcccChHHHh
Confidence            8899999999999999999999999999887   54  7888999999999999999888543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.91  E-value=0.00046  Score=58.07  Aligned_cols=114  Identities=8%  Similarity=-0.035  Sum_probs=91.9

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++++.....++..+|++..+|..+..+....   ..+.+.+..+..++..+|++..+|.....+...++.        +
T Consensus        29 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~--------~   97 (166)
T 1a17_A           29 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRT---ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK--------F   97 (166)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcc--------H
Confidence            47789999999999999999999999988877   478999999999999999999999998888877665        6


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHH
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRN  236 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~  236 (425)
                      .+.+..+.++++.+|.+..+|.+...+...+....+.+.++...+
T Consensus        98 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  142 (166)
T 1a17_A           98 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH  142 (166)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            888999999999999999998776555433332234444444443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.91  E-value=0.00031  Score=66.89  Aligned_cols=133  Identities=5%  Similarity=-0.142  Sum_probs=73.4

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++++.....+|..+|++..++.....++...+   ..++++..+..++..+|.....+......+.....        .
T Consensus       133 ~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g---~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~--------~  201 (287)
T 3qou_A          133 YTDALPLLXDAWQLSNQNGEIGLLLAETLIALN---RSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAA--------D  201 (287)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTT---CHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHT--------S
T ss_pred             HHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCC---CHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcc--------c
Confidence            355666666666666666666666666555552   55666666666666666443333333322222222        1


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC--hhHHHHHHHHHHH
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVAD--NSCFHYHRRLMIW  257 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N--~SaW~yR~~ll~~  257 (425)
                      ..++..+.++++.+|.|..+|....-++...+.  +++.++.+.+.+..+|.+  -.+|.....++..
T Consensus       202 ~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~--~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~  267 (287)
T 3qou_A          202 TPEIQQLQQQVAENPEDAALATQLALQLHQVGR--NEEALELLFGHLRXDLTAADGQTRXTFQEILAA  267 (287)
T ss_dssp             CHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHhcCCccHHHHHHHHHHHHHccc--HHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence            334555566666666666666666665555544  456666666666666665  4455554444433

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.91  E-value=0.00049  Score=54.86  Aligned_cols=120  Identities=14%  Similarity=0.047  Sum_probs=101.0

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++++.....++..+|++..+|.....+....   ..+++.+..+..++..+|.+..+|.....+....+.        +
T Consensus        17 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~   85 (136)
T 2fo7_A           17 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ---GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD--------Y   85 (136)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--------H
T ss_pred             HHHHHHHHHHHHHcCCcchhHHHHHHHHHHHh---cCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC--------H
Confidence            46788899999999999999999888877766   378999999999999999999998877766655443        6


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVAD  244 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N  244 (425)
                      ++.+.++.++++.+|.+..+|.....+....+.  +.+.+..+.+.+..+|.+
T Consensus        86 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD--YDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc--HHHHHHHHHHHHccCCCC
Confidence            888999999999999999999988888776654  678888899988888753

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.90  E-value=0.00019  Score=62.62  Aligned_cols=134  Identities=7%  Similarity=-0.126  Sum_probs=107.5

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++++.....++..+|++..+|.....++...+   .+++.+..+..++..+| ++..+.....+... ....      .
T Consensus        22 ~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g---~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~-~~~~------~   90 (176)
T 2r5s_A           22 HAQALNVIQTLSDELQSRGDVKLAKADCLLETK---QFELAQELLATIPLEYQ-DNSYKSLIAKLELH-QQAA------E   90 (176)
T ss_dssp             HHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTT---CHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHH-HHHT------S
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCC---CHHHHHHHHHHhhhccC-ChHHHHHHHHHHHH-hhcc------c
Confidence            478999999999999999999999999988774   78999999999999999 77665544433211 1100      1


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC--hhHHHHHHHHHHHh
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVAD--NSCFHYHRRLMIWN  258 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N--~SaW~yR~~ll~~l  258 (425)
                      ..++..+.++++.+|.|..+|....-++...+.  +++.+..+.+.+..+|..  ..+|.....++..+
T Consensus        91 ~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~  157 (176)
T 2r5s_A           91 SPELKRLEQELAANPDNFELACELAVQYNQVGR--DEEALELLWNILKVNLGAQDGEVKKTFMDILSAL  157 (176)
T ss_dssp             CHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc--HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh
Confidence            235788999999999999999999999888776  788999999999999876  45888777666653

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.89  E-value=0.0014  Score=52.11  Aligned_cols=135  Identities=10%  Similarity=0.059  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchh
Q 045108          131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYR  210 (425)
Q Consensus       131 TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~  210 (425)
                      .+|+....+....   ..+++.+.++..++..+|.+..+|.....+....+.        +++.+.++.++++.+|.+..
T Consensus         2 ~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~   70 (136)
T 2fo7_A            2 EAWYNLGNAYYKQ---GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD--------YDEAIEYYQKALELDPRSAE   70 (136)
T ss_dssp             HHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHCTTCHH
T ss_pred             cHHHHHHHHHHHc---CcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcC--------HHHHHHHHHHHHHHCCCchH
Confidence            3566666666555   378999999999999999999999887776665543        67888999999999999999


Q ss_pred             hhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHH
Q 045108          211 AWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNES  290 (425)
Q Consensus       211 AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~  290 (425)
                      +|.....+....+.  +.+.+..+.+.+..+|.+..+|.....+.... +                   -+++.+.+..+
T Consensus        71 ~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~-------------------~~~~A~~~~~~  128 (136)
T 2fo7_A           71 AWYNLGNAYYKQGD--YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ-G-------------------DYDEAIEYYQK  128 (136)
T ss_dssp             HHHHHHHHHHTTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-T-------------------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH-c-------------------cHHHHHHHHHH
Confidence            99888887766654  78889999999999999988887766665432 1                   15566777778


Q ss_pred             HHhhcCCC
Q 045108          291 LIKRYVGR  298 (425)
Q Consensus       291 ~I~~~p~n  298 (425)
                      .+..+|.+
T Consensus       129 ~~~~~~~~  136 (136)
T 2fo7_A          129 ALELDPRS  136 (136)
T ss_dssp             HHHHSTTC
T ss_pred             HHccCCCC
Confidence            88877753

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.86  E-value=0.00024  Score=60.88  Aligned_cols=116  Identities=9%  Similarity=-0.021  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhh------------------CCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          130 ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSH------------------SPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       130 ~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~------------------~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      ..+|.-++..+...   ..+.+++.....++..                  +|.+..+|..+..+..+++.        +
T Consensus        11 a~~~~~~G~~~~~~---~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~--------~   79 (162)
T 3rkv_A           11 VEALRQKGNELFVQ---KDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD--------L   79 (162)
T ss_dssp             HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC--------H
T ss_pred             HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc--------H
Confidence            45566677766665   4789999999999988                  78888999999999888765        7


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCh-hHHHHHHHHHHHh
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADN-SCFHYHRRLMIWN  258 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~-SaW~yR~~ll~~l  258 (425)
                      .+.+..+.++++.+|.|..+|..++.++..++.  +.+.+..+.+.+..+|.|- ........+...+
T Consensus        80 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~--~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~  145 (162)
T 3rkv_A           80 HEAEETSSEVLKREETNEKALFRRAKARIAAWK--LDEAEEDLKLLLRNHPAAASVVAREMKIVTERR  145 (162)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhc--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999988876  7899999999999999998 5566665555443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=97.86  E-value=0.00093  Score=68.75  Aligned_cols=159  Identities=6%  Similarity=-0.129  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHH-hCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCch-hhhhHHHHHHHHHhhccchhHHh
Q 045108          113 IEVMIHSKALLL-LSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE-QAWSHRRWVINMISRNCSTLQWI  190 (425)
Q Consensus       113 ~~~L~~t~~lLl-~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy-~~W~hRrwll~~l~~~~~~~~~~  190 (425)
                      ++++.....++. ++|++..+|.....+....+   .+++.......++..+|+++ .+|.....++.+.+.        
T Consensus       303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~--------  371 (530)
T 2ooe_A          303 DEAANIYERAISTLLKKNMLLYFAYADYEESRM---KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG--------  371 (530)
T ss_dssp             HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC---CHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC--------
Confidence            478999999997 89999999999999888774   78999999999999999986 589988877766554        


Q ss_pred             HHHHHHHHHHHHHhcCCchhhhhHHHHHHH-hhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCC
Q 045108          191 IERESELVEKIAERSKMNYRAWNHRCWLVS-FMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNN  269 (425)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~-~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~  269 (425)
                      +++...++.++++..|.++++|.-..++.- ..+.  .+......++.++.+|.+...|.....+..+. +         
T Consensus       372 ~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~--~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~-g---------  439 (530)
T 2ooe_A          372 IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD--KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL-N---------  439 (530)
T ss_dssp             HHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT-T---------
T ss_pred             HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhC-C---------
Confidence            578889999999999999888876666532 2333  67889999999999999999997665554332 1         


Q ss_pred             CCCchhhhhHHHHHHHHHHHHHHhhcCCCc----cHHHH
Q 045108          270 SSGYFVETYQVWKEELDWNESLIKRYVGRE----ALWLH  304 (425)
Q Consensus       270 ~~~~~~~~~~~~~~EL~~~~~~I~~~p~ne----SaW~y  304 (425)
                                -.++......+++...|.+.    .+|..
T Consensus       440 ----------~~~~Ar~~~~~al~~~~~~~~~~~~lw~~  468 (530)
T 2ooe_A          440 ----------EDNNTRVLFERVLTSGSLPPEKSGEIWAR  468 (530)
T ss_dssp             ----------CHHHHHHHHHHHHHSCCSCGGGCHHHHHH
T ss_pred             ----------CHhhHHHHHHHHHhccCCCHHHHHHHHHH
Confidence                      13444555566777665543    48854

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.85  E-value=0.0039  Score=56.50  Aligned_cols=166  Identities=5%  Similarity=-0.155  Sum_probs=120.0

Q ss_pred             hHHHHHHHHHHHHhCCccH---HHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchh---hhhHHHHHHHHHhhcc-
Q 045108          112 AIEVMIHSKALLLLSCDFA---TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQ---AWSHRRWVINMISRNC-  184 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~---TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~---~W~hRrwll~~l~~~~-  184 (425)
                      .++++.....++..+|+..   .++..+..+....   ..+++++...+.++..+|++..   +|..+..+...+.... 
T Consensus        20 ~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~---~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~   96 (225)
T 2yhc_A           20 WRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN---ADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSAL   96 (225)
T ss_dssp             HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhh
Confidence            4789999999999999864   6888889888877   4799999999999999999986   6777777765532100 


Q ss_pred             -------c--hhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHh---------------hchhhHHHHHHHHHHHHhh
Q 045108          185 -------S--TLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSF---------------MTREQVLNELKQSRNWSGL  240 (425)
Q Consensus       185 -------~--~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~---------------~~~~~~~~EL~~~~~~i~~  240 (425)
                             .  .-...+++.+..+.++++.+|.+-.+|.-+..+...               +....+...+...++.++.
T Consensus        97 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~  176 (225)
T 2yhc_A           97 QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD  176 (225)
T ss_dssp             -----------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence                   0  001347889999999999999999988644332111               1112467889999999999


Q ss_pred             cCCCh---hHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCcc
Q 045108          241 HVADN---SCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREA  300 (425)
Q Consensus       241 d~~N~---SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neS  300 (425)
                      +|.+-   -++..+..+..++ +                   ..++.+++...++...|.+..
T Consensus       177 ~p~~~~~~~a~~~l~~~~~~~-g-------------------~~~~A~~~~~~l~~~~~~~~~  219 (225)
T 2yhc_A          177 YPDTQATRDALPLMENAYRQM-Q-------------------MNAQAEKVAKIIAANSSNTLE  219 (225)
T ss_dssp             STTSHHHHHHHHHHHHHHHHT-T-------------------CHHHHHHHHHHHHHCCSCCCC
T ss_pred             CcCCCccHHHHHHHHHHHHHc-C-------------------CcHHHHHHHHHHHhhCCCchh
Confidence            99876   4566666665553 1                   145566777777777777654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.84  E-value=0.00059  Score=64.90  Aligned_cols=154  Identities=8%  Similarity=-0.099  Sum_probs=122.4

Q ss_pred             HhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHH
Q 045108          124 LLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAE  203 (425)
Q Consensus       124 l~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~  203 (425)
                      ..-|++..++......+...   +.+.+++..+..+|..+|++..+|....-++...+.        +++.+..+.+++.
T Consensus       111 ~~lp~~~~~~~~~a~~~~~~---g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~--------~~~A~~~l~~~~~  179 (287)
T 3qou_A          111 XVLPREEELXAQQAMQLMQE---SNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNR--------SEDAEAVLXTIPL  179 (287)
T ss_dssp             HHSCCHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC--------HHHHHHHHTTSCG
T ss_pred             HHcCCchhhHHHHHHHHHhC---CCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCC--------HHHHHHHHHhCch
Confidence            33499999998888777766   478999999999999999999999999888877665        6889999999999


Q ss_pred             hcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHH
Q 045108          204 RSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKE  283 (425)
Q Consensus       204 ~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~  283 (425)
                      .+|.+...+......+...+.  ...+++...+.+..+|.|..++..+..++... +                   -+++
T Consensus       180 ~~p~~~~~~~~~~~~l~~~~~--~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~-g-------------------~~~~  237 (287)
T 3qou_A          180 QDQDTRYQGLVAQIELLXQAA--DTPEIQQLQQQVAENPEDAALATQLALQLHQV-G-------------------RNEE  237 (287)
T ss_dssp             GGCSHHHHHHHHHHHHHHHHT--SCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-T-------------------CHHH
T ss_pred             hhcchHHHHHHHHHHHHhhcc--cCccHHHHHHHHhcCCccHHHHHHHHHHHHHc-c-------------------cHHH
Confidence            999766655555544433332  34578889999999999999999988887653 1                   2677


Q ss_pred             HHHHHHHHHhhcCCC--ccHHHHHHHHHH
Q 045108          284 ELDWNESLIKRYVGR--EALWLHRRFLSL  310 (425)
Q Consensus       284 EL~~~~~~I~~~p~n--eSaW~yrr~Ll~  310 (425)
                      .++...+++..+|++  ..+|..+-.++.
T Consensus       238 A~~~l~~~l~~~p~~~~~~a~~~l~~~~~  266 (287)
T 3qou_A          238 ALELLFGHLRXDLTAADGQTRXTFQEILA  266 (287)
T ss_dssp             HHHHHHHHHHHCTTGGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccccchHHHHHHHHHH
Confidence            888889999999999  677777655554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.81  E-value=0.0016  Score=54.68  Aligned_cols=112  Identities=7%  Similarity=-0.003  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCch
Q 045108          130 ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNY  209 (425)
Q Consensus       130 ~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY  209 (425)
                      ..+|.....+....   ..+.+++..+..++..+|++..+|..+..+....+.        +.+.+..+.++++.+|.+.
T Consensus        13 ~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~a~~~~~~~~   81 (166)
T 1a17_A           13 AEELKTQANDYFKA---KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC--------YGYALGDATRAIELDKKYI   81 (166)
T ss_dssp             HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCcccH
Confidence            45566666666655   478999999999999999999999999988877654        6889999999999999999


Q ss_pred             hhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 045108          210 RAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRL  254 (425)
Q Consensus       210 ~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~l  254 (425)
                      .+|.....+...++.  +.+.+..+.+.+..+|.+..+|.+....
T Consensus        82 ~~~~~~a~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~~~~~  124 (166)
T 1a17_A           82 KGYYRRAASNMALGK--FRAALRDYETVVKVKPHDKDAKMKYQEC  124 (166)
T ss_dssp             HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999888775  7889999999999999999988665544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.81  E-value=0.00026  Score=58.49  Aligned_cols=100  Identities=10%  Similarity=-0.029  Sum_probs=71.5

Q ss_pred             HHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhh
Q 045108          133 WNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAW  212 (425)
Q Consensus       133 Wn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW  212 (425)
                      |..+...+...   ..+.+++..+..++..+|++..+|.....++...+.        +.+.+..+.++++.+|.+..+|
T Consensus        20 ~~~~g~~~~~~---g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~al~l~P~~~~~~   88 (121)
T 1hxi_A           20 PMEEGLSMLKL---ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK--------DGLAIIALNHARMLDPKDIAVH   88 (121)
T ss_dssp             HHHHHHHHHHT---TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHc---CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHHHH
Confidence            44444444444   367888888888888888888888888887776654        5778888888888888888888


Q ss_pred             hHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCh
Q 045108          213 NHRCWLVSFMTREQVLNELKQSRNWSGLHVADN  245 (425)
Q Consensus       213 ~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~  245 (425)
                      .....++...+.  +++.+..+++++..+|.+.
T Consensus        89 ~~la~~~~~~g~--~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           89 AALAVSHTNEHN--ANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHH--HHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHcCC--HHHHHHHHHHHHHhCcCCC
Confidence            888877776654  6777888888888887653

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.79  E-value=0.00021  Score=59.06  Aligned_cols=87  Identities=9%  Similarity=-0.089  Sum_probs=74.5

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++++.....++..+|++..+|..++.++...+   .+.+++..+..++..+|.+..+|.....++...+.        +
T Consensus        33 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~--------~  101 (121)
T 1hxi_A           33 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENE---KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN--------A  101 (121)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH--------H
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------H
Confidence            478999999999999999999999999998874   78999999999999999999999999998888765        6


Q ss_pred             HHHHHHHHHHHHhcCCch
Q 045108          192 ERESELVEKIAERSKMNY  209 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY  209 (425)
                      ++.+..+.++++.+|.+-
T Consensus       102 ~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A          102 NAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHhCcCCC
Confidence            889999999999999764

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.79  E-value=0.0013  Score=51.81  Aligned_cols=118  Identities=12%  Similarity=0.027  Sum_probs=94.4

Q ss_pred             CCcc-HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHh
Q 045108          126 SCDF-ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAER  204 (425)
Q Consensus       126 npe~-~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~  204 (425)
                      +|.. ..+|.....+....   ..+++.+.++..++..+|.+..+|.....+....+.        +++.+.++.++++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~~~~~   72 (125)
T 1na0_A            4 DPGNSAEAWYNLGNAYYKQ---GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD--------YDEAIEYYQKALEL   72 (125)
T ss_dssp             ---CHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHh
Confidence            4555 66777777776666   478999999999999999999998888777766543        68888999999999


Q ss_pred             cCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 045108          205 SKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMI  256 (425)
Q Consensus       205 ~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~  256 (425)
                      +|.+..+|.....+....+.  +.+.+..+++.+..+|.+..++..+..+..
T Consensus        73 ~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           73 DPNNAEAWYNLGNAYYKQGD--YDEAIEYYQKALELDPNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             CTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            99999999888888877665  788899999999999999888877665543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.78  E-value=9.2e-05  Score=65.61  Aligned_cols=90  Identities=10%  Similarity=0.063  Sum_probs=80.5

Q ss_pred             chHHHHHHHHHHHHhCCc-------cHH-----HHHHHHHHHHccCCcccHHHHHHHHHHHHhh-------CCCchhhh-
Q 045108          111 VAIEVMIHSKALLLLSCD-------FAT-----AWNSRKLIVSNKQLLPILMDELRLSAVVLSH-------SPKSEQAW-  170 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe-------~~T-----aWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~-------~PKsy~~W-  170 (425)
                      ..++++..++.+|.++|+       +..     +|+.|..++..++   .+++.+..++.+|..       +|++..+| 
T Consensus        26 ~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lg---r~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~  102 (159)
T 2hr2_A           26 EYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR---SFDEALHSADKALHYFNRRGELNQDEGKLWI  102 (159)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHCCTTSTHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhhhccccCCCchHHHHH
Confidence            358899999999999999       554     9999999999984   899999999999999       99999999 


Q ss_pred             ---hHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhh
Q 045108          171 ---SHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRA  211 (425)
Q Consensus       171 ---~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~A  211 (425)
                         +.|..++..++.        +++.+....++++.+|..-.+
T Consensus       103 ~~~~~rG~aL~~lgr--------~eEAl~~y~kAlel~p~d~~~  138 (159)
T 2hr2_A          103 SAVYSRALALDGLGR--------GAEAMPEFKKVVEMIEERKGE  138 (159)
T ss_dssp             HHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHCCSC
T ss_pred             HHHHhHHHHHHHCCC--------HHHHHHHHHHHHhcCCCcHHH
Confidence               999999999876        689999999999999965444

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.77  E-value=0.00065  Score=54.17  Aligned_cols=101  Identities=9%  Similarity=-0.043  Sum_probs=89.3

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++++.....++..+|++..+|..+..+....   ..+++++..+..++..+|++..+|.....+....+.        +
T Consensus        28 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~   96 (131)
T 2vyi_A           28 FEAAVHFYGKAIELNPANAVYFCNRAAAYSKL---GNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNK--------H   96 (131)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh---hchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCC--------H
Confidence            47789999999999999999999999988877   478999999999999999999999999888877654        6


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhc
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMT  223 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~  223 (425)
                      .+.+.++.++++.+|.+..+|.....+...++
T Consensus        97 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           97 VEAVAYYKKALELDPDNETYKSNLKIAELKLR  128 (131)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence            88899999999999999999988877766544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.76  E-value=0.00054  Score=66.93  Aligned_cols=102  Identities=11%  Similarity=-0.010  Sum_probs=93.0

Q ss_pred             hHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHH
Q 045108          112 AIEVMIHSKALLLLSCDF---------------ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWV  176 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~---------------~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwl  176 (425)
                      .++++.....+|.++|++               ..+|+.+..++...+   .+.+++..+..+|..+|++..+|..+..+
T Consensus       163 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg~~  239 (336)
T 1p5q_A          163 YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ---AFSAAIESCNKALELDSNNEKGLSRRGEA  239 (336)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            478999999999999999               699999999998874   89999999999999999999999999999


Q ss_pred             HHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhch
Q 045108          177 INMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR  224 (425)
Q Consensus       177 l~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~  224 (425)
                      +..++.        +++.+..+.++++.+|.|-.+|.....+...++.
T Consensus       240 ~~~~g~--------~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~  279 (336)
T 1p5q_A          240 HLAVND--------FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR  279 (336)
T ss_dssp             HHHTTC--------HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHCCC--------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence            888765        6899999999999999999999999888877654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.73  E-value=0.00022  Score=63.15  Aligned_cols=100  Identities=6%  Similarity=-0.058  Sum_probs=79.7

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCC-------cccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhcc
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQL-------LPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNC  184 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~-------~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~  184 (425)
                      -+++++....++.+||++..+|+..+.++.....       ...+++++..+..+|.++|++..+|+...-++..++...
T Consensus        18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~   97 (158)
T 1zu2_A           18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT   97 (158)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccC
Confidence            3678889999999999999999999988876530       113679999999999999999999999999998775321


Q ss_pred             ch---hHHhHHHHHHHHHHHHHhcCCchhh
Q 045108          185 ST---LQWIIERESELVEKIAERSKMNYRA  211 (425)
Q Consensus       185 ~~---~~~~~~~EL~~~~~~l~~~pkNY~A  211 (425)
                      ++   ....+++.+.++.++++.+|.|-..
T Consensus        98 P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y  127 (158)
T 1zu2_A           98 PDETEAKHNFDLATQFFQQAVDEQPDNTHY  127 (158)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             cchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence            10   1234788999999999999987543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.73  E-value=0.00062  Score=64.62  Aligned_cols=158  Identities=9%  Similarity=-0.063  Sum_probs=112.7

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++++.....++..+|++..+|..+..++...+   .+++++..+..++..+|.+..+|..+..++..++.        +
T Consensus        20 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------~   88 (281)
T 2c2l_A           20 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ---QPEQALADCRRALELDGQSVKAHFFLGQCQLEMES--------Y   88 (281)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------H
Confidence            477899999999999999999999999888874   78999999999999999999999999999888765        6


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCC
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSS  271 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~  271 (425)
                      ++.+..+.++++.+|.+..+.....|..-....     ............+.+.....+...++.+              
T Consensus        89 ~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~l~~l~~~--------------  149 (281)
T 2c2l_A           89 DEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK-----KKRWNSIEERRIHQESELHSYLTRLIAA--------------  149 (281)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHH-----HHHHHHHHHTCCCCCCHHHHHHHHHHHH--------------
T ss_pred             HHHHHHHHHHHHhCccchhhHHHHHHHHHHHHH-----HHHHHHHHHHHHhhhHHHHHHHHHHHHH--------------
Confidence            888999999999999775554444443322211     1122222234566677777776655432              


Q ss_pred             CchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHH
Q 045108          272 GYFVETYQVWKEELDWNESLIKRYVGREALWLHRRF  307 (425)
Q Consensus       272 ~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~  307 (425)
                              -.++.++..+.+++.+|++..+..-...
T Consensus       150 --------~~~~A~~~~~~al~~~p~~~~~~~~l~~  177 (281)
T 2c2l_A          150 --------ERERELEECQRNHEGHEDDGHIRAQQAC  177 (281)
T ss_dssp             --------HHHHHHTTTSGGGTTTSCHHHHTHHHHH
T ss_pred             --------HHHHHHHHHHhhhccccchhhhhhHHHH
Confidence                    1344555556667777777655544433

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.73  E-value=0.0011  Score=54.34  Aligned_cols=120  Identities=9%  Similarity=-0.017  Sum_probs=98.1

Q ss_pred             hCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhc
Q 045108          162 HSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLH  241 (425)
Q Consensus       162 ~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d  241 (425)
                      .+|.+..+|.....+....+.        +.+.+.+..++++.+|.+..+|..+..+...++.  +...+..+.+.+..+
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~--------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~   73 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRK--------YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ--PEQALADCRRALELD   73 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHC
T ss_pred             CccccHHHHHHHHHHHHHhCc--------HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhC
Confidence            467888888888877776654        7899999999999999999999999999988775  788999999999999


Q ss_pred             CCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCC-----CccHHHHHHHHHHH
Q 045108          242 VADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVG-----REALWLHRRFLSLY  311 (425)
Q Consensus       242 ~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~-----neSaW~yrr~Ll~~  311 (425)
                      |.+..+|..+..+...+ +                   -+++.+.+..+++..+|+     +..++...+.+...
T Consensus        74 p~~~~~~~~l~~~~~~~-~-------------------~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~  128 (137)
T 3q49_B           74 GQSVKAHFFLGQCQLEM-E-------------------SYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK  128 (137)
T ss_dssp             TTCHHHHHHHHHHHHHT-T-------------------CHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHH-h-------------------hHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence            99999999998887664 2                   156778888888888888     77777776655543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.69  E-value=0.00052  Score=55.28  Aligned_cols=99  Identities=8%  Similarity=0.018  Sum_probs=87.6

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++++.....++..+|++..+|..+..+....   ..+++++..+..++..+|++..+|.....+...++.        +
T Consensus        32 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~--------~  100 (133)
T 2lni_A           32 YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL---LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKD--------Y  100 (133)
T ss_dssp             SHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhh--------H
Confidence            47789999999999999999999999988776   478999999999999999999999999988887664        6


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHh
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSF  221 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~  221 (425)
                      ++.+..+.++++.+|.+..+|.....+...
T Consensus       101 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  130 (133)
T 2lni_A          101 TKAMDVYQKALDLDSSCKEAADGYQRCMMA  130 (133)
T ss_dssp             HHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            889999999999999999988877766644

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.64  E-value=0.00034  Score=61.02  Aligned_cols=151  Identities=9%  Similarity=-0.110  Sum_probs=109.3

Q ss_pred             CccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcC
Q 045108          127 CDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK  206 (425)
Q Consensus       127 pe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p  206 (425)
                      |.....+.-+...+...   ..+.+.+..+..++..+|++..+|.....++...+.        +++.+..+.++++.+|
T Consensus         3 ~~~~~~~~~~a~~~~~~---g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~--------~~~A~~~~~~a~~~~p   71 (176)
T 2r5s_A            3 ASPDEQLLKQVSELLQQ---GEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQ--------FELAQELLATIPLEYQ   71 (176)
T ss_dssp             ---CTTHHHHHHHHHHT---TCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTC--------HHHHHHHHTTCCGGGC
T ss_pred             CCHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCC--------HHHHHHHHHHhhhccC
Confidence            33334444455555554   478999999999999999999999999999887765        6889999999999999


Q ss_pred             CchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHH
Q 045108          207 MNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELD  286 (425)
Q Consensus       207 kNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~  286 (425)
                       +...+.....+... ........+..+++.+..+|.|..+|..+..++... +                   -+++.+.
T Consensus        72 -~~~~~~~~~~~~~~-~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~-g-------------------~~~~A~~  129 (176)
T 2r5s_A           72 -DNSYKSLIAKLELH-QQAAESPELKRLEQELAANPDNFELACELAVQYNQV-G-------------------RDEEALE  129 (176)
T ss_dssp             -CHHHHHHHHHHHHH-HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-T-------------------CHHHHHH
T ss_pred             -ChHHHHHHHHHHHH-hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-c-------------------cHHHHHH
Confidence             76555444433211 110112358899999999999999999988887663 2                   1677788


Q ss_pred             HHHHHHhhcCCC--ccHHHHHHHHHH
Q 045108          287 WNESLIKRYVGR--EALWLHRRFLSL  310 (425)
Q Consensus       287 ~~~~~I~~~p~n--eSaW~yrr~Ll~  310 (425)
                      ...+++..+|++  ..+|.....++.
T Consensus       130 ~~~~~l~~~p~~~~~~a~~~l~~~~~  155 (176)
T 2r5s_A          130 LLWNILKVNLGAQDGEVKKTFMDILS  155 (176)
T ss_dssp             HHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHhCcccChHHHHHHHHHHHH
Confidence            888999999986  447776654443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.63  E-value=0.0014  Score=57.99  Aligned_cols=117  Identities=9%  Similarity=-0.108  Sum_probs=98.8

Q ss_pred             cHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCch----------------hhhhHHHHHHHHHhhccchhHHhHH
Q 045108          129 FATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE----------------QAWSHRRWVINMISRNCSTLQWIIE  192 (425)
Q Consensus       129 ~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy----------------~~W~hRrwll~~l~~~~~~~~~~~~  192 (425)
                      ...+|..++......   ..+.+++.....++...|+++                .+|..+..+...++.        ++
T Consensus        37 ~~~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------~~  105 (198)
T 2fbn_A           37 SAFDIKEEGNEFFKK---NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD--------YP  105 (198)
T ss_dssp             HHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC--------HH
T ss_pred             HHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcC--------HH
Confidence            345566667666665   478999999999999999988                788888777776654        68


Q ss_pred             HHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108          193 RESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWN  258 (425)
Q Consensus       193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l  258 (425)
                      +.+..+.++++.+|.+..+|..++.+...++.  ++..+..+.+.+..+|.|..++.....+...+
T Consensus       106 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  169 (198)
T 2fbn_A          106 KAIDHASKVLKIDKNNVKALYKLGVANMYFGF--LEEAKENLYKAASLNPNNLDIRNSYELCVNKL  169 (198)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence            99999999999999999999999999887775  78899999999999999999998888777654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.62  E-value=0.0018  Score=57.19  Aligned_cols=120  Identities=4%  Similarity=-0.073  Sum_probs=102.8

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++++.....++  +| +..+|+.+..+....+   .+++++..+..++..+|++..+|..+..+...++.        +
T Consensus        22 ~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~--------~   87 (213)
T 1hh8_A           22 WKGALDAFSAVQ--DP-HSRICFNIGCMYTILK---NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK--------Y   87 (213)
T ss_dssp             HHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc--------H
Confidence            366777777774  44 7789999999888774   78999999999999999999999999998887765        6


Q ss_pred             HHHHHHHHHHHHhcCCch----------------hhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhH
Q 045108          192 ERESELVEKIAERSKMNY----------------RAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSC  247 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY----------------~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~Sa  247 (425)
                      ++.+..+.++++..|.|-                .+|..++.+...++.  ++..+...++.+..+|.+..+
T Consensus        88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~  157 (213)
T 1hh8_A           88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE--WKKAEEQLALATSMKSEPRHS  157 (213)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCSGGGG
T ss_pred             HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC--HHHHHHHHHHHHHcCcccccc
Confidence            889999999999888877                899999998888775  788999999999999988654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.60  E-value=0.00099  Score=63.20  Aligned_cols=106  Identities=8%  Similarity=-0.063  Sum_probs=93.9

Q ss_pred             CccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcC
Q 045108          127 CDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK  206 (425)
Q Consensus       127 pe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p  206 (425)
                      |....++..+...+...   +.+.+++.....++..+|.++.+|..+..+...++.        +.+.+..+.++++.+|
T Consensus         1 p~~a~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--------~~~A~~~~~~al~~~p   69 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVG---RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ--------PEQALADCRRALELDG   69 (281)
T ss_dssp             CCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHTTSCT
T ss_pred             ChhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhCC
Confidence            56677888888887776   479999999999999999999999999999887765        6899999999999999


Q ss_pred             CchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCh
Q 045108          207 MNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADN  245 (425)
Q Consensus       207 kNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~  245 (425)
                      .|..+|..++.++..++.  +++.+..+.+.+..+|.|.
T Consensus        70 ~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~l~p~~~  106 (281)
T 2c2l_A           70 QSVKAHFFLGQCQLEMES--YDEAIANLQRAYSLAKEQR  106 (281)
T ss_dssp             TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCccch
Confidence            999999999999988875  7889999999999988763

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.59  E-value=0.00015  Score=74.68  Aligned_cols=115  Identities=8%  Similarity=-0.040  Sum_probs=94.1

Q ss_pred             cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHH
Q 045108          110 TVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQW  189 (425)
Q Consensus       110 ~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~  189 (425)
                      ...+++++....+|.++|++..+|+.+..++...+   .+++++.....++..+|++..+|..+..++..+++       
T Consensus        20 g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~-------   89 (477)
T 1wao_1           20 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE---CYGYALGDATRAIELDKKYIKGYYRRAASNMALGK-------   89 (477)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC-------
T ss_pred             CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------
Confidence            34678999999999999999999999999998874   79999999999999999999999999999888765       


Q ss_pred             hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHH
Q 045108          190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSR  235 (425)
Q Consensus       190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~  235 (425)
                       +++.++.+.++++.+|.+..+|.....+...+....+++.++..+
T Consensus        90 -~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           90 -FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             -HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence             688999999999999999999998877743333223444555555

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.59  E-value=0.0012  Score=51.55  Aligned_cols=96  Identities=9%  Similarity=0.049  Sum_probs=84.6

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++++.....++..+|++..+|..+..+....   ..+.+.+..+..++..+|++..+|.....+....+.        +
T Consensus        20 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~   88 (118)
T 1elw_A           20 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK---GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR--------F   88 (118)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh--------H
Confidence            47889999999999999999999999988877   478999999999999999999999999988887654        6


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHH
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWL  218 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wl  218 (425)
                      .+.+..+.++++.+|.+-.+|....-+
T Consensus        89 ~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           89 EEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            888999999999999998888765443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.59  E-value=0.00056  Score=69.87  Aligned_cols=134  Identities=8%  Similarity=-0.050  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCc---------------hhhhh
Q 045108          149 LMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN---------------YRAWN  213 (425)
Q Consensus       149 l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN---------------Y~AW~  213 (425)
                      +++++......+..+|+...+|..+..++.+...        +...+..+.++++.+|.+               ..+|.
T Consensus       250 ~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~--------~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~  321 (457)
T 1kt0_A          250 FEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGK--------YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL  321 (457)
T ss_dssp             EECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHH
T ss_pred             cccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHH
Confidence            3445555566667788888999999988887654        789999999999999999               68999


Q ss_pred             HHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHh
Q 045108          214 HRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIK  293 (425)
Q Consensus       214 hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~  293 (425)
                      .+..+...++.  +...+..+++.+..+|.|..+|..|..++..+ +                   -+++.+.+..+++.
T Consensus       322 nla~~~~~~g~--~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~-g-------------------~~~~A~~~~~~al~  379 (457)
T 1kt0_A          322 NLAMCYLKLRE--YTKAVECCDKALGLDSANEKGLYRRGEAQLLM-N-------------------EFESAKGDFEKVLE  379 (457)
T ss_dssp             HHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-T-------------------CHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcC--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc-c-------------------CHHHHHHHHHHHHH
Confidence            99999988776  88999999999999999999999998887664 2                   26788899999999


Q ss_pred             hcCCCccHHHHHHHHHHHH
Q 045108          294 RYVGREALWLHRRFLSLYL  312 (425)
Q Consensus       294 ~~p~neSaW~yrr~Ll~~~  312 (425)
                      .+|+|..+|..+..+...+
T Consensus       380 l~P~~~~a~~~l~~~~~~~  398 (457)
T 1kt0_A          380 VNPQNKAARLQISMCQKKA  398 (457)
T ss_dssp             TC----CHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHH
Confidence            9999999999987776654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.57  E-value=0.0015  Score=57.72  Aligned_cols=105  Identities=7%  Similarity=-0.104  Sum_probs=87.3

Q ss_pred             cHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccc--hhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhch-
Q 045108          148 ILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCS--TLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR-  224 (425)
Q Consensus       148 ~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~--~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~-  224 (425)
                      .+++.+.....++..+|++..+|....-++..+.....  .....+++.+..++++++.+|++-.||...+-++..++. 
T Consensus        17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l   96 (158)
T 1zu2_A           17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL   96 (158)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhccc
Confidence            47888999999999999999999999998888765321  122457899999999999999999999999999877642 


Q ss_pred             --------hhHHHHHHHHHHHHhhcCCChhHHHHHH
Q 045108          225 --------EQVLNELKQSRNWSGLHVADNSCFHYHR  252 (425)
Q Consensus       225 --------~~~~~EL~~~~~~i~~d~~N~SaW~yR~  252 (425)
                              ..+++.++++++.++.+|.|-..|....
T Consensus        97 ~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~  132 (158)
T 1zu2_A           97 TPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE  132 (158)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence                    3588999999999999999876655544

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.52  E-value=0.00056  Score=56.86  Aligned_cols=105  Identities=9%  Similarity=-0.057  Sum_probs=79.8

Q ss_pred             ccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCC
Q 045108          128 DFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKM  207 (425)
Q Consensus       128 e~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pk  207 (425)
                      +...++.-.+......   +.+++++...+.++..+|++..+|+.+..+...++.        +++.+..+.++++.+|.
T Consensus         6 d~A~a~~~lG~~~~~~---~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~--------~~~A~~~~~~al~~~~~   74 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQ---KDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKK--------FAECVQFCEKAVEVGRE   74 (127)
T ss_dssp             HHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhh--------HHHHHHHHHHHHHhCcc
Confidence            4455666667666665   478999999999999999999999999999888765        68899999999999998


Q ss_pred             chhhhhHHHHHHHhhch-----hhHHHHHHHHHHHHhhcCC
Q 045108          208 NYRAWNHRCWLVSFMTR-----EQVLNELKQSRNWSGLHVA  243 (425)
Q Consensus       208 NY~AW~hR~wll~~~~~-----~~~~~EL~~~~~~i~~d~~  243 (425)
                      +..++..+..+..+++.     ..+...+++..+.+..+|.
T Consensus        75 ~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           75 TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred             cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence            87655554444443332     2367788888888887764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.51  E-value=0.00083  Score=57.44  Aligned_cols=98  Identities=11%  Similarity=-0.029  Sum_probs=82.6

Q ss_pred             hHHHHHHHHHHHHh------------------CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHH
Q 045108          112 AIEVMIHSKALLLL------------------SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHR  173 (425)
Q Consensus       112 ~~~~L~~t~~lLl~------------------npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hR  173 (425)
                      .++++.....+|.+                  +|.+..+|..+..+....+   .+.+++..++.+|..+|.+..+|..+
T Consensus        27 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~---~~~~A~~~~~~al~~~p~~~~a~~~~  103 (162)
T 3rkv_A           27 YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG---DLHEAEETSSEVLKREETNEKALFRR  103 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            36677777777777                  8899999999999998874   79999999999999999999999999


Q ss_pred             HHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCch-hhhhHHHHHHH
Q 045108          174 RWVINMISRNCSTLQWIIERESELVEKIAERSKMNY-RAWNHRCWLVS  220 (425)
Q Consensus       174 rwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY-~AW~hR~wll~  220 (425)
                      ..++..++.        +++.+..+.++++.+|.|- .+.....-+..
T Consensus       104 g~~~~~~g~--------~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~  143 (162)
T 3rkv_A          104 AKARIAAWK--------LDEAEEDLKLLLRNHPAAASVVAREMKIVTE  143 (162)
T ss_dssp             HHHHHHTTC--------HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHhc--------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            999988875        6899999999999999987 44544444433

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.51  E-value=0.00012  Score=71.80  Aligned_cols=120  Identities=8%  Similarity=-0.058  Sum_probs=84.9

Q ss_pred             hCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCch-----------------hhhhHHHHHHHHHhhccchh
Q 045108          125 LSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE-----------------QAWSHRRWVINMISRNCSTL  187 (425)
Q Consensus       125 ~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy-----------------~~W~hRrwll~~l~~~~~~~  187 (425)
                      ..++...+|+.+...+...   ..+.+++.....++..+|.+.                 .+|..+..++.++..     
T Consensus       174 ~~~~~a~~~~~~g~~~~~~---g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~-----  245 (338)
T 2if4_A          174 ERIGAADRRKMDGNSLFKE---EKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKR-----  245 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCSS---SCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTC-----
T ss_pred             HHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCC-----
Confidence            3455567777777776665   478999999999999999887                 377777777766654     


Q ss_pred             HHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 045108          188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIW  257 (425)
Q Consensus       188 ~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~  257 (425)
                         +.+.+..+.++++.+|.|..+|..+..++..++.  +++.+..+.+.+..+|.|..++..+..+...
T Consensus       246 ---~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~--~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~  310 (338)
T 2if4_A          246 ---YDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQ--MDSARDDFRKAQKYAPDDKAIRRELRALAEQ  310 (338)
T ss_dssp             ---CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--HHHHHHHHHHTTC------------------
T ss_pred             ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence               5889999999999999999999999999988776  7899999999999999999998887766443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.50  E-value=0.0011  Score=51.54  Aligned_cols=108  Identities=6%  Similarity=-0.071  Sum_probs=88.6

Q ss_pred             CCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcC
Q 045108          163 SPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHV  242 (425)
Q Consensus       163 ~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~  242 (425)
                      +|.+..+|.....+....+.        +.+.+..+.++++.+|.+..+|..+..+....+.  +++.+..+++.+..+|
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~a~~~~~   71 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGN--------YTESIDLFEKAIQLDPEESKYWLMKGKALYNLER--YEEAVDCYNYVINVIE   71 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCC--------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTSC
T ss_pred             CCCcHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCc
Confidence            68889999988887765543        6889999999999999999999999998887765  7889999999999999


Q ss_pred             C--ChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCc
Q 045108          243 A--DNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGRE  299 (425)
Q Consensus       243 ~--N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~ne  299 (425)
                      .  +..+|..+..+...+.+                   -+++.+++..+.+..+|++.
T Consensus        72 ~~~~~~~~~~l~~~~~~~~~-------------------~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           72 DEYNKDVWAAKADALRYIEG-------------------KEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             CTTCHHHHHHHHHHHTTCSS-------------------CSHHHHHHHHHHGGGCCCCC
T ss_pred             ccchHHHHHHHHHHHHHHhC-------------------CHHHHHHHHHHHhhcccCCC
Confidence            9  88888887766543201                   14677888899999988764

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.47  E-value=0.0033  Score=59.58  Aligned_cols=160  Identities=3%  Similarity=-0.200  Sum_probs=110.4

Q ss_pred             hHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc------hhhhhHHHHHHHH
Q 045108          112 AIEVMIHSKALLLLSCD------FATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS------EQAWSHRRWVINM  179 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe------~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs------y~~W~hRrwll~~  179 (425)
                      .++++.....++.+.+.      ...+++..+.++...+   .+++++.....++...|+.      ..+|+....+...
T Consensus        53 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g---~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~  129 (292)
T 1qqe_A           53 LNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG---NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN  129 (292)
T ss_dssp             THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            47788888888888532      2678888888888774   7899999999999987754      3466666666665


Q ss_pred             H-hhccchhHHhHHHHHHHHHHHHHhcCCc------hhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhH-----
Q 045108          180 I-SRNCSTLQWIIERESELVEKIAERSKMN------YRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSC-----  247 (425)
Q Consensus       180 l-~~~~~~~~~~~~~EL~~~~~~l~~~pkN------Y~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~Sa-----  247 (425)
                      . +.        +++.+.++.++++.+|.+      ..++...+.+...++.  +.+.+..+++.+..+|.+...     
T Consensus       130 ~lg~--------~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~  199 (292)
T 1qqe_A          130 DLHD--------YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ--YIEASDIYSKLIKSSMGNRLSQWSLK  199 (292)
T ss_dssp             TTCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred             hhcC--------HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhcCCcccHHHH
Confidence            2 43        688999999999998865      3466677777776665  789999999999999987642     


Q ss_pred             --HHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHH
Q 045108          248 --FHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLH  304 (425)
Q Consensus       248 --W~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~y  304 (425)
                        |..+..+...+ +                   -+.+.+.+..+.+..+|++......
T Consensus       200 ~~~~~lg~~~~~~-g-------------------~~~~A~~~~~~al~l~p~~~~~~~~  238 (292)
T 1qqe_A          200 DYFLKKGLCQLAA-T-------------------DAVAAARTLQEGQSEDPNFADSRES  238 (292)
T ss_dssp             HHHHHHHHHHHHT-T-------------------CHHHHHHHHHGGGCC---------H
T ss_pred             HHHHHHHHHHHHc-C-------------------CHHHHHHHHHHHHhhCCCCCCcHHH
Confidence              23333222221 1                   2567788889999999988776554

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.44  E-value=0.0034  Score=51.45  Aligned_cols=116  Identities=3%  Similarity=-0.191  Sum_probs=94.1

Q ss_pred             hCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCc---hhhhhHHHHHHHhhchhhHHHHHHHHHHHH
Q 045108          162 HSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN---YRAWNHRCWLVSFMTREQVLNELKQSRNWS  238 (425)
Q Consensus       162 ~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN---Y~AW~hR~wll~~~~~~~~~~EL~~~~~~i  238 (425)
                      .+|++...|..+.......+.        +.+.+.+..++++.+|.+   ..+|..+..+....+.  +.+.+..+.+.+
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~   92 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGD--------YGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLED--YDKAETEASKAI   92 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTC--------HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHcc--HHHHHHHHHHHH
Confidence            457777888777766655443        788999999999999998   8899998888877665  789999999999


Q ss_pred             hhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHH
Q 045108          239 GLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRF  307 (425)
Q Consensus       239 ~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~  307 (425)
                      ..+|.+..+|..+..++..+ +                   -+++.+.+..+++..+|.+..+|.....
T Consensus        93 ~~~~~~~~~~~~~a~~~~~~-~-------------------~~~~A~~~~~~al~~~p~~~~~~~~l~~  141 (148)
T 2dba_A           93 EKDGGDVKALYRRSQALEKL-G-------------------RLDQAVLDLQRCVSLEPKNKVFQEALRN  141 (148)
T ss_dssp             HHTSCCHHHHHHHHHHHHHH-T-------------------CHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             hhCccCHHHHHHHHHHHHHc-C-------------------CHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence            99999999998888777654 1                   2567788889999999999988876543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.44  E-value=0.004  Score=49.51  Aligned_cols=116  Identities=11%  Similarity=-0.062  Sum_probs=93.1

Q ss_pred             ccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCC
Q 045108          128 DFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKM  207 (425)
Q Consensus       128 e~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pk  207 (425)
                      +...+|.....+....   ..+.+.+..+..++..+|.+..+|.....+....+.        +.+.+.++.++++.+|.
T Consensus         2 ~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~~~~~~~~   70 (131)
T 1elr_A            2 KQALKEKELGNDAYKK---KDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD--------YNKCRELCEKAIEVGRE   70 (131)
T ss_dssp             HHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHhhccc
Confidence            4456677777766665   478999999999999999999999998888877654        68889999999999998


Q ss_pred             c-------hhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 045108          208 N-------YRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIW  257 (425)
Q Consensus       208 N-------Y~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~  257 (425)
                      +       ..+|.....+....+.  +...++...+.+..+| |...+.....+...
T Consensus        71 ~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~  124 (131)
T 1elr_A           71 NREDYRQIAKAYARIGNSYFKEEK--YKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI  124 (131)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence            7       7888888888777665  7888999999999988 66666665555444

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.43  E-value=0.0036  Score=55.21  Aligned_cols=133  Identities=10%  Similarity=0.013  Sum_probs=106.7

Q ss_pred             HHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhh
Q 045108          133 WNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAW  212 (425)
Q Consensus       133 Wn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW  212 (425)
                      +..+..+....   ..+++++..+..++  .| ++.+|..+..+....+.        +.+.+..+.++++.+|.+..+|
T Consensus         9 ~~~~g~~~~~~---~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~~~~~~~~   74 (213)
T 1hh8_A            9 LWNEGVLAADK---KDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKN--------MTEAEKAFTRSINRDKHLAVAY   74 (213)
T ss_dssp             HHHHHHHHHHT---TCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHh---CCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCccchHHH
Confidence            33445555544   47899999988885  33 77899988888877654        6899999999999999999999


Q ss_pred             hHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCh----------------hHHHHHHHHHHHhhccccccCCCCCCCchhh
Q 045108          213 NHRCWLVSFMTREQVLNELKQSRNWSGLHVADN----------------SCFHYHRRLMIWNLEGFCHIQDNNSSGYFVE  276 (425)
Q Consensus       213 ~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~----------------SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~  276 (425)
                      ..++.+...++.  +.+.+..+.+.+..+|.|.                .+|..+..+...+ +                
T Consensus        75 ~~lg~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g----------------  135 (213)
T 1hh8_A           75 FQRGMLYYQTEK--YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK-E----------------  135 (213)
T ss_dssp             HHHHHHHHHTTC--HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT-T----------------
T ss_pred             HHHHHHHHHccc--HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHc-c----------------
Confidence            999999888775  7889999999999998887                8888887776653 1                


Q ss_pred             hhHHHHHHHHHHHHHHhhcCCCccH
Q 045108          277 TYQVWKEELDWNESLIKRYVGREAL  301 (425)
Q Consensus       277 ~~~~~~~EL~~~~~~I~~~p~neSa  301 (425)
                         -+++.+.+..+++..+|++...
T Consensus       136 ---~~~~A~~~~~~al~~~p~~~~~  157 (213)
T 1hh8_A          136 ---EWKKAEEQLALATSMKSEPRHS  157 (213)
T ss_dssp             ---CHHHHHHHHHHHHTTCCSGGGG
T ss_pred             ---CHHHHHHHHHHHHHcCcccccc
Confidence               2677788889999999987553

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.39  E-value=0.0046  Score=48.55  Aligned_cols=98  Identities=15%  Similarity=0.052  Sum_probs=84.5

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .+++++....++..+|++..+|+....++...   ..+++.+.++..++..+|.+..+|.....+....+.        +
T Consensus        25 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------~   93 (125)
T 1na0_A           25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ---GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD--------Y   93 (125)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC--------H
Confidence            47789999999999999999999998888776   478999999999999999999999888877776554        6


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHH
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVS  220 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~  220 (425)
                      ++.+..+.++++.+|.+-.++.....+..
T Consensus        94 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           94 DEAIEYYQKALELDPNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            88899999999999999888877665544

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.37  E-value=0.016  Score=52.34  Aligned_cols=156  Identities=6%  Similarity=0.025  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCch---hhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcC
Q 045108          130 ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE---QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK  206 (425)
Q Consensus       130 ~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy---~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p  206 (425)
                      ..++..+...+...   +.+++++..++.++..+|.++   .+|..+..+..+.+.        +++.+....++++.+|
T Consensus         4 ~~~~~~~a~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~--------~~~A~~~~~~~l~~~P   72 (225)
T 2yhc_A            4 PNEIYATAQQKLQD---GNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD--------LPLAQAAIDRFIRLNP   72 (225)
T ss_dssp             HHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHCc
Confidence            34556666655555   478999999999999999885   578888888777654        7899999999999999


Q ss_pred             Cchh---hhhHHHHHHHhhc----------------hhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCC
Q 045108          207 MNYR---AWNHRCWLVSFMT----------------REQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQD  267 (425)
Q Consensus       207 kNY~---AW~hR~wll~~~~----------------~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~  267 (425)
                      .+..   ||..++.+...++                ....++.+...++.++.+|.+.-++.-+..+..-. ......  
T Consensus        73 ~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~-~~~~~~--  149 (225)
T 2yhc_A           73 THPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLK-DRLAKY--  149 (225)
T ss_dssp             TCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH-HHHHHH--
T ss_pred             CCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH-HHHHHH--
Confidence            9986   7888887765431                12478889999999999999998886544332110 000000  


Q ss_pred             CCCCCchhhhhHHHHHHHHHHHHHHhhcCCCc
Q 045108          268 NNSSGYFVETYQVWKEELDWNESLIKRYVGRE  299 (425)
Q Consensus       268 ~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~ne  299 (425)
                      .-..+..-....-+.+.+...+++|..+|++.
T Consensus       150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~  181 (225)
T 2yhc_A          150 EYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQ  181 (225)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSH
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCC
Confidence            00000000001235778888999999999976

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.36  E-value=0.001  Score=65.11  Aligned_cols=122  Identities=8%  Similarity=-0.053  Sum_probs=73.3

Q ss_pred             chHHHHHHHHHHHHhCCccH-----------------HHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHH
Q 045108          111 VAIEVMIHSKALLLLSCDFA-----------------TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHR  173 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~~-----------------TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hR  173 (425)
                      ..++++.....+|.++|++.                 .+|+.+..++...+   .+.+++..+..+|..+|++..+|..+
T Consensus       194 ~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~l  270 (338)
T 2if4_A          194 KLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLK---RYDEAIGHCNIVLTEEEKNPKALFRR  270 (338)
T ss_dssp             CCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTT---CCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            35789999999999999988                 48999998888774   78999999999999999999999999


Q ss_pred             HHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC
Q 045108          174 RWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVAD  244 (425)
Q Consensus       174 rwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N  244 (425)
                      ..++..+..        +++.+..+.++++.+|.|-.++.....+...... ....+-..+.+++..+|.+
T Consensus       271 g~a~~~~g~--------~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~-~~~~a~~~~~~~l~~~p~~  332 (338)
T 2if4_A          271 GKAKAELGQ--------MDSARDDFRKAQKYAPDDKAIRRELRALAEQEKA-LYQKQKEMYKGIFKGKDEG  332 (338)
T ss_dssp             HHHHHTTTC--------HHHHHHHHHHTTC-----------------------------------------
T ss_pred             HHHHHHcCC--------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCC
Confidence            998887765        6899999999999999999999887766544332 2455566777777777654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.34  E-value=0.00065  Score=55.08  Aligned_cols=96  Identities=11%  Similarity=0.030  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHh---CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHH
Q 045108          113 IEVMIHSKALLLL---SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQW  189 (425)
Q Consensus       113 ~~~L~~t~~lLl~---npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~  189 (425)
                      ++++.....+|.+   +|++..+|.....++...+   .+++++..+..++..+|++..+|.....++..++.       
T Consensus         7 ~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-------   76 (117)
T 3k9i_A            7 AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLG---EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR-------   76 (117)
T ss_dssp             CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-------
T ss_pred             HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC-------
Confidence            4577888899999   6999999999999998874   79999999999999999999999999999888775       


Q ss_pred             hHHHHHHHHHHHHHhcCCchhhhhHHHHHH
Q 045108          190 IIERESELVEKIAERSKMNYRAWNHRCWLV  219 (425)
Q Consensus       190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll  219 (425)
                       +++.+..+.++++.+|.+-.+..|..-+.
T Consensus        77 -~~~A~~~~~~al~~~p~~~~~~~~~~ai~  105 (117)
T 3k9i_A           77 -YEQGVELLLKIIAETSDDETIQSYKQAIL  105 (117)
T ss_dssp             -HHHHHHHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred             -HHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence             68899999999999999988776655443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.29  E-value=0.0036  Score=55.21  Aligned_cols=101  Identities=13%  Similarity=-0.019  Sum_probs=88.9

Q ss_pred             hHHHHHHHHHHHHhCCccH----------------HHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHH
Q 045108          112 AIEVMIHSKALLLLSCDFA----------------TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRW  175 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~----------------TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrw  175 (425)
                      .++++.....++.++|++.                .+|..+..+....   ..+++++..+..++..+|++..+|..+..
T Consensus        54 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~lg~  130 (198)
T 2fbn_A           54 INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN---KDYPKAIDHASKVLKIDKNNVKALYKLGV  130 (198)
T ss_dssp             HHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            4789999999999999887                8999999888877   47999999999999999999999999999


Q ss_pred             HHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhc
Q 045108          176 VINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMT  223 (425)
Q Consensus       176 ll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~  223 (425)
                      ++..++.        +++.+..+.++++.+|.+..++.....+...++
T Consensus       131 ~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  170 (198)
T 2fbn_A          131 ANMYFGF--------LEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  170 (198)
T ss_dssp             HHHHHTC--------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHccc--------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence            8887765        688999999999999999999888777766544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.28  E-value=0.0023  Score=63.68  Aligned_cols=116  Identities=9%  Similarity=-0.101  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHccCCcccHHHHHHHHHHHHh----------------hCCCchhhhhHHHHHHHHHhhccchhHHhHHH
Q 045108          130 ATAWNSRKLIVSNKQLLPILMDELRLSAVVLS----------------HSPKSEQAWSHRRWVINMISRNCSTLQWIIER  193 (425)
Q Consensus       130 ~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~----------------~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~  193 (425)
                      ..+|+.+...+...   ..+++++.....++.                .+|.+..+|..+..++.++..        +++
T Consensus       223 a~~~~~~g~~~~~~---g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~--------~~~  291 (370)
T 1ihg_A          223 SEDLKNIGNTFFKS---QNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD--------WQG  291 (370)
T ss_dssp             HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC--------HHH
T ss_pred             HHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccC--------HHH
Confidence            45567777766665   478999999999998                788889999999999887765        689


Q ss_pred             HHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108          194 ESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWN  258 (425)
Q Consensus       194 EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l  258 (425)
                      .+..+.++++.+|.|..+|..+..++..++.  +++.+..+.+.++.+|.|..++.....+...+
T Consensus       292 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~  354 (370)
T 1ihg_A          292 AVDSCLEALEIDPSNTKALYRRAQGWQGLKE--YDQALADLKKAQEIAPEDKAIQAELLKVKQKI  354 (370)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCchhHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988776  78999999999999999999998887776654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.27  E-value=0.00048  Score=55.85  Aligned_cols=99  Identities=3%  Similarity=0.009  Sum_probs=86.1

Q ss_pred             cHHHHHHHHHHHHhh---CCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhch
Q 045108          148 ILMDELRLSAVVLSH---SPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR  224 (425)
Q Consensus       148 ~l~~EL~~~~~lL~~---~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~  224 (425)
                      .+++++.++..++..   +|.+..+|.....++...+.        +++.+..+.++++.+|.+..+|.....++..++.
T Consensus         5 ~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~   76 (117)
T 3k9i_A            5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGE--------YRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR   76 (117)
T ss_dssp             --CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             cHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC
Confidence            456788999999999   59999999999998887765        6899999999999999999999999999988876


Q ss_pred             hhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 045108          225 EQVLNELKQSRNWSGLHVADNSCFHYHRRLMI  256 (425)
Q Consensus       225 ~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~  256 (425)
                        +.+.+..+.+.+..+|.|.....|...+..
T Consensus        77 --~~~A~~~~~~al~~~p~~~~~~~~~~ai~~  106 (117)
T 3k9i_A           77 --YEQGVELLLKIIAETSDDETIQSYKQAILF  106 (117)
T ss_dssp             --HHHHHHHHHHHHHHHCCCHHHHHTHHHHHH
T ss_pred             --HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence              788999999999999999998888776543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.24  E-value=0.0086  Score=48.13  Aligned_cols=98  Identities=8%  Similarity=-0.090  Sum_probs=69.1

Q ss_pred             ccHHHHHHHHHHHHhhCCCch---hhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCc---hhhhhHHHHHHH
Q 045108          147 PILMDELRLSAVVLSHSPKSE---QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN---YRAWNHRCWLVS  220 (425)
Q Consensus       147 ~~l~~EL~~~~~lL~~~PKsy---~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN---Y~AW~hR~wll~  220 (425)
                      ..+.+.+..+..++..+|.+.   .+|.....+....+.        +.+.+..+.++++.+|.+   -.++.....+..
T Consensus        16 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~--------~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~   87 (129)
T 2xev_A           16 GKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRN--------FQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY   87 (129)
T ss_dssp             TCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence            367777788888888788777   577776666665543        577777778888888877   666777777776


Q ss_pred             hhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 045108          221 FMTREQVLNELKQSRNWSGLHVADNSCFHYHRRL  254 (425)
Q Consensus       221 ~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~l  254 (425)
                      .++.  ++..+...++.+..+|.+..+..-+..+
T Consensus        88 ~~g~--~~~A~~~~~~~~~~~p~~~~~~~a~~~l  119 (129)
T 2xev_A           88 GEGK--NTEAQQTLQQVATQYPGSDAARVAQERL  119 (129)
T ss_dssp             HTTC--HHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred             HcCC--HHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            6654  6677777788888887776665554433

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.23  E-value=0.006  Score=49.10  Aligned_cols=98  Identities=9%  Similarity=-0.152  Sum_probs=84.5

Q ss_pred             hHHHHHHHHHHHHhCCccH---HHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc---hhhhhHHHHHHHHHhhccc
Q 045108          112 AIEVMIHSKALLLLSCDFA---TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS---EQAWSHRRWVINMISRNCS  185 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~---TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs---y~~W~hRrwll~~l~~~~~  185 (425)
                      .++++.....++..+|++.   .+|.....+....   ..+.+++..+..++..+|++   ..++.....+...++.   
T Consensus        18 ~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~---   91 (129)
T 2xev_A           18 YDDASQLFLSFLELYPNGVYTPNALYWLGESYYAT---RNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGK---   91 (129)
T ss_dssp             HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCC---
Confidence            4788999999999999998   7999999888877   47999999999999999999   7889888888877665   


Q ss_pred             hhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHH
Q 045108          186 TLQWIIERESELVEKIAERSKMNYRAWNHRCWLVS  220 (425)
Q Consensus       186 ~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~  220 (425)
                           +++.+..+.++++.+|.+..++.-+..+-.
T Consensus        92 -----~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~  121 (129)
T 2xev_A           92 -----NTEAQQTLQQVATQYPGSDAARVAQERLQS  121 (129)
T ss_dssp             -----HHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence                 688999999999999999888776655543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.18  E-value=0.0016  Score=54.08  Aligned_cols=92  Identities=5%  Similarity=0.021  Sum_probs=73.1

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      -++++.....+|.++|++.++|+.|+.+....+   .+++++..+..++..+|++...+..+..++..++.... ....+
T Consensus        24 ~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~-~~~~~   99 (127)
T 4gcn_A           24 FEKAHVHYDKAIELDPSNITFYNNKAAVYFEEK---KFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQ-KQNDL   99 (127)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhh---hHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH-HcCCH
Confidence            478999999999999999999999999998884   89999999999999999988766655555544432110 01237


Q ss_pred             HHHHHHHHHHHHhcCC
Q 045108          192 ERESELVEKIAERSKM  207 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pk  207 (425)
                      ++.++...++++.+|.
T Consensus       100 ~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A          100 SLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHhhCcC
Confidence            8889999999998874

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.15  E-value=0.0013  Score=67.58  Aligned_cols=98  Identities=7%  Similarity=0.014  Sum_probs=90.5

Q ss_pred             ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhh
Q 045108          147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ  226 (425)
Q Consensus       147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~  226 (425)
                      ..+++++.....++..+|++..+|..+..++.+++.        +++.+..+.++++.+|.+..+|..+..+...++.  
T Consensus        20 g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~--   89 (477)
T 1wao_1           20 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC--------YGYALGDATRAIELDKKYIKGYYRRAASNMALGK--   89 (477)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC--
T ss_pred             CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--
Confidence            578999999999999999999999999999888765        6899999999999999999999999999988776  


Q ss_pred             HHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 045108          227 VLNELKQSRNWSGLHVADNSCFHYHRRL  254 (425)
Q Consensus       227 ~~~EL~~~~~~i~~d~~N~SaW~yR~~l  254 (425)
                      +++.++..++.++.+|.+..+|.....+
T Consensus        90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~  117 (477)
T 1wao_1           90 FRAALRDYETVVKVKPHDKDAKMKYQEC  117 (477)
T ss_dssp             HHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            7899999999999999999999988766

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.04  E-value=0.0034  Score=50.25  Aligned_cols=86  Identities=10%  Similarity=0.000  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHH
Q 045108          114 EVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIER  193 (425)
Q Consensus       114 ~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~  193 (425)
                      +++.....++..+|++..+|.....++...+   .+++++..+..++..+|.+..+|.....++...+.        +.+
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--------~~~   71 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHE---QFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGD--------RAG   71 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------HHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCC--------HHH
Confidence            3677888999999999999999999888774   78999999999999999999999999988887765        678


Q ss_pred             HHHHHHHHHHhcCCchh
Q 045108          194 ESELVEKIAERSKMNYR  210 (425)
Q Consensus       194 EL~~~~~~l~~~pkNY~  210 (425)
                      .+..+.++++.+|.+-.
T Consensus        72 A~~~~~~al~~~~~~~~   88 (115)
T 2kat_A           72 ARQAWESGLAAAQSRGD   88 (115)
T ss_dssp             HHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhcccccc
Confidence            88899999998886543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.01  E-value=0.014  Score=52.75  Aligned_cols=119  Identities=11%  Similarity=0.002  Sum_probs=91.5

Q ss_pred             CccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhh--------CCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHH
Q 045108          127 CDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSH--------SPKSEQAWSHRRWVINMISRNCSTLQWIIERESELV  198 (425)
Q Consensus       127 pe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~--------~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~  198 (425)
                      |....+|+....+....+   .+.+++.++..++..        +|....+|.....+....+.        +.+.+.++
T Consensus        40 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~  108 (283)
T 3edt_B           40 PDVATMLNILALVYRDQN---KYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK--------YKEAEPLC  108 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC--------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc--------HHHHHHHH
Confidence            677888888888888774   789999999999876        46666777777777665544        57777777


Q ss_pred             HHHHHh--------cCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhh--------cCCChhHHHHHHHHHHHh
Q 045108          199 EKIAER--------SKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGL--------HVADNSCFHYHRRLMIWN  258 (425)
Q Consensus       199 ~~~l~~--------~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~--------d~~N~SaW~yR~~ll~~l  258 (425)
                      .++++.        +|.+..++.....+....+.  +++.+..+.+.+..        +|.+..++.....+....
T Consensus       109 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  182 (283)
T 3edt_B          109 KRALEIREKVLGKFHPDVAKQLNNLALLCQNQGK--AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQ  182 (283)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Confidence            777777        58888899888888877765  77888888888887        666667777777666553

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=96.97  E-value=0.011  Score=58.56  Aligned_cols=101  Identities=8%  Similarity=-0.103  Sum_probs=89.8

Q ss_pred             hHHHHHHHHHHHH----------------hCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHH
Q 045108          112 AIEVMIHSKALLL----------------LSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRW  175 (425)
Q Consensus       112 ~~~~L~~t~~lLl----------------~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrw  175 (425)
                      .++++.....+|.                ++|.+..+|+.+..++...+   .+++++..++.+|..+|++..+|..+..
T Consensus       239 ~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg~  315 (370)
T 1ihg_A          239 WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS---DWQGAVDSCLEALEIDPSNTKALYRRAQ  315 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            4778888888888                88899999999999988874   7999999999999999999999999999


Q ss_pred             HHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhc
Q 045108          176 VINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMT  223 (425)
Q Consensus       176 ll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~  223 (425)
                      ++..+.+        +++.+..+.++++.+|.|-.++.....+...++
T Consensus       316 ~~~~~g~--------~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~  355 (370)
T 1ihg_A          316 GWQGLKE--------YDQALADLKKAQEIAPEDKAIQAELLKVKQKIK  355 (370)
T ss_dssp             HHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHccC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9988765        689999999999999999999988887776654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=96.92  E-value=0.012  Score=46.87  Aligned_cols=97  Identities=3%  Similarity=-0.137  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHH
Q 045108          151 DELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNE  230 (425)
Q Consensus       151 ~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~E  230 (425)
                      +.+..+..++..+|.++.+|.....+....+.        +.+.+..+.++++.+|.+..+|.....+....+.  +.+.
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A   72 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQ--------FDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGD--RAGA   72 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--HHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCC--HHHH
Confidence            45778889999999999999999988877654        6889999999999999999999999999888775  6788


Q ss_pred             HHHHHHHHhhcCCC--hhHHHHHHHHHHH
Q 045108          231 LKQSRNWSGLHVAD--NSCFHYHRRLMIW  257 (425)
Q Consensus       231 L~~~~~~i~~d~~N--~SaW~yR~~ll~~  257 (425)
                      +..+.+.+..+|.+  ..+......++..
T Consensus        73 ~~~~~~al~~~~~~~~~~~~~~l~~~l~~  101 (115)
T 2kat_A           73 RQAWESGLAAAQSRGDQQVVKELQVFLRR  101 (115)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence            89999999887754  3444443444433

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.85  E-value=0.013  Score=43.90  Aligned_cols=83  Identities=14%  Similarity=0.065  Sum_probs=63.3

Q ss_pred             ccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCC
Q 045108          128 DFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKM  207 (425)
Q Consensus       128 e~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pk  207 (425)
                      .+..+|.....+....   ..+.+.+..+..++..+|.+..+|.....++...+.        +++.+..+.++++.+|.
T Consensus         7 ~~~~~~~~la~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~p~   75 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQ---GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD--------YDEAIEYYQKALELDPN   75 (91)
T ss_dssp             HHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTT
T ss_pred             ccHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHhcCCC
Confidence            4566777777766665   367888888888888888888888888877776554        57788888888888888


Q ss_pred             chhhhhHHHHHHHh
Q 045108          208 NYRAWNHRCWLVSF  221 (425)
Q Consensus       208 NY~AW~hR~wll~~  221 (425)
                      +..+|.....+...
T Consensus        76 ~~~~~~~l~~~~~~   89 (91)
T 1na3_A           76 NAEAKQNLGNAKQK   89 (91)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            88888776665543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.82  E-value=0.01  Score=46.13  Aligned_cols=69  Identities=3%  Similarity=0.071  Sum_probs=52.3

Q ss_pred             cHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCc
Q 045108          129 FATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN  208 (425)
Q Consensus       129 ~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN  208 (425)
                      ...+|..+..+....   ..+.+++.....++..+|+++.+|..+..++..++.        +++.+..+.++++.+|.+
T Consensus         3 ~~~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQ---GLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGE--------YTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHTSCSST
T ss_pred             hHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhCCCc
Confidence            345666777666665   367888888888888888888888888877776654        577788888888888887

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.78  E-value=0.0071  Score=57.23  Aligned_cols=163  Identities=6%  Similarity=-0.099  Sum_probs=106.1

Q ss_pred             chHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc------hhhhhHHHHHHH
Q 045108          111 VAIEVMIHSKALLLLSCDF------ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS------EQAWSHRRWVIN  178 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~------~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs------y~~W~hRrwll~  178 (425)
                      ..++++.....+|.+.|+.      ..+++....+.....  ..+++++.....++..+|+.      ..+++....++.
T Consensus        92 ~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~l--g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~  169 (292)
T 1qqe_A           92 NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDL--HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA  169 (292)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence            3577889999999988765      567887888887730  37899999999999988765      355666666666


Q ss_pred             HHhhccchhHHhHHHHHHHHHHHHHhcCCchh-------hhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHH
Q 045108          179 MISRNCSTLQWIIERESELVEKIAERSKMNYR-------AWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYH  251 (425)
Q Consensus       179 ~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~-------AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR  251 (425)
                      .++.        +.+.+..+.++++.+|.+..       +|...+.+...++.  +...+..+++.+..+|+...+...+
T Consensus       170 ~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~l~p~~~~~~~~~  239 (292)
T 1qqe_A          170 LDGQ--------YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD--AVAAARTLQEGQSEDPNFADSRESN  239 (292)
T ss_dssp             HTTC--------HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC--HHHHHHHHHGGGCC---------HH
T ss_pred             HhCC--------HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCCCcHHHH
Confidence            6554        68999999999999998864       34444555555554  7889999999999999888766553


Q ss_pred             HH--HHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCcc
Q 045108          252 RR--LMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREA  300 (425)
Q Consensus       252 ~~--ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neS  300 (425)
                      ..  +...+ ...              ....+.+.+...++++..+|.+..
T Consensus       240 ~l~~l~~~~-~~~--------------~~~~~~~A~~~~~~~~~l~~~~~~  275 (292)
T 1qqe_A          240 FLKSLIDAV-NEG--------------DSEQLSEHCKEFDNFMRLDKWKIT  275 (292)
T ss_dssp             HHHHHHHHH-HTT--------------CTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred             HHHHHHHHH-HcC--------------CHHHHHHHHHHhccCCccHHHHHH
Confidence            22  12211 100              012366667766677776775433

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.61  E-value=0.0056  Score=48.28  Aligned_cols=73  Identities=8%  Similarity=-0.021  Sum_probs=62.5

Q ss_pred             hCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHh
Q 045108          125 LSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAER  204 (425)
Q Consensus       125 ~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~  204 (425)
                      .+|++..+|.....++...   ..+++++..+..++..+|++..+|..+..++..++.        +++.+..+.++++.
T Consensus         2 ~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~al~l   70 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKH---DNASRALALFEELVETDPDYVGTYYHLGKLYERLDR--------TDDAIDTYAQGIEV   70 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhh
Confidence            4899999999999998877   479999999999999999999999999999988765        67888889999888


Q ss_pred             cCCc
Q 045108          205 SKMN  208 (425)
Q Consensus       205 ~pkN  208 (425)
                      .|++
T Consensus        71 ~~~~   74 (100)
T 3ma5_A           71 AREE   74 (100)
T ss_dssp             HHHH
T ss_pred             hhcC
Confidence            7654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=96.49  E-value=0.027  Score=44.49  Aligned_cols=97  Identities=7%  Similarity=-0.084  Sum_probs=79.1

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc-------hhhhhHHHHHHHHHhhcc
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS-------EQAWSHRRWVINMISRNC  184 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs-------y~~W~hRrwll~~l~~~~  184 (425)
                      .++++.....++..+|++..+|.....+....   ..+++++..+..++..+|.+       ..+|.....+....+.  
T Consensus        20 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--   94 (131)
T 1elr_A           20 FDTALKHYDKAKELDPTNMTYITNQAAVYFEK---GDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEK--   94 (131)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh---ccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhcc--
Confidence            47889999999999999999999999888777   47899999999999998887       7777777777766554  


Q ss_pred             chhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHH
Q 045108          185 STLQWIIERESELVEKIAERSKMNYRAWNHRCWLVS  220 (425)
Q Consensus       185 ~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~  220 (425)
                            +++.+.++.++++.+| +-.++....-+..
T Consensus        95 ------~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~  123 (131)
T 1elr_A           95 ------YKDAIHFYNKSLAEHR-TPDVLKKCQQAEK  123 (131)
T ss_dssp             ------HHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence                  6888999999999998 6666555444443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=96.49  E-value=0.061  Score=49.36  Aligned_cols=173  Identities=12%  Similarity=0.017  Sum_probs=111.2

Q ss_pred             hHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhh--------CCCchhhhhHHHH
Q 045108          112 AIEVMIHSKALLLL--------SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSH--------SPKSEQAWSHRRW  175 (425)
Q Consensus       112 ~~~~L~~t~~lLl~--------npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~--------~PKsy~~W~hRrw  175 (425)
                      .++++.....++.+        +|....+++....+....+   .+++.+..+..++..        +|....+|.....
T Consensus        43 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~  119 (311)
T 3nf1_A           43 YEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN---KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAV  119 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            46677777777774        7888889999988888774   789999999998876        4666677777777


Q ss_pred             HHHHHhhccchhHHhHHHHHHHHHHHHHhc--------CCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhh-------
Q 045108          176 VINMISRNCSTLQWIIERESELVEKIAERS--------KMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGL-------  240 (425)
Q Consensus       176 ll~~l~~~~~~~~~~~~~EL~~~~~~l~~~--------pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~-------  240 (425)
                      +....+.        +.+.+.++.++++..        |....+|.....+....+.  +.+.++...+.+..       
T Consensus       120 ~~~~~g~--------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~  189 (311)
T 3nf1_A          120 LYGKRGK--------YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK--YEEVEYYYQRALEIYQTKLGP  189 (311)
T ss_dssp             HHHTTTC--------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHHHHTSCT
T ss_pred             HHHHcCc--------HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHhCC
Confidence            6665543        567777777777663        6667788888888776665  67888888888887       


Q ss_pred             -cCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHH--hhcCCCccHHHHHHHHHH
Q 045108          241 -HVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLI--KRYVGREALWLHRRFLSL  310 (425)
Q Consensus       241 -d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I--~~~p~neSaW~yrr~Ll~  310 (425)
                       ++....+|.....+.... +.            ..++...+++-++...+.-  ...+.+...|.+...+..
T Consensus       190 ~~~~~~~~~~~la~~~~~~-g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (311)
T 3nf1_A          190 DDPNVAKTKNNLASCYLKQ-GK------------FKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREE  249 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHHH-TC------------HHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHc-CC------------HHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Confidence             566666677666665543 11            1222233333333222211  235667777777655443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=96.38  E-value=0.042  Score=50.47  Aligned_cols=131  Identities=7%  Similarity=-0.046  Sum_probs=93.5

Q ss_pred             hHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhC--------CCchhhhhHHHH
Q 045108          112 AIEVMIHSKALLLL--------SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHS--------PKSEQAWSHRRW  175 (425)
Q Consensus       112 ~~~~L~~t~~lLl~--------npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~--------PKsy~~W~hRrw  175 (425)
                      .++++.....++.+        +|....+++....+....   ..+++++.++..++...        |....+|.....
T Consensus        85 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~  161 (311)
T 3nf1_A           85 YKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKR---GKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL  161 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHc---CcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            46778888888877        577788888888888776   47899999999998763        556667777766


Q ss_pred             HHHHHhhccchhHHhHHHHHHHHHHHHHh--------cCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhh-------
Q 045108          176 VINMISRNCSTLQWIIERESELVEKIAER--------SKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGL-------  240 (425)
Q Consensus       176 ll~~l~~~~~~~~~~~~~EL~~~~~~l~~--------~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~-------  240 (425)
                      +....+.        +.+.+.++.++++.        +|....+|.....+....+.  +++.+..+.+.+..       
T Consensus       162 ~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~  231 (311)
T 3nf1_A          162 LCQNQGK--------YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK--FKQAETLYKEILTRAHEREFG  231 (311)
T ss_dssp             HHHTTTC--------HHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHcCC--------HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcCC
Confidence            6665543        67888888888887        77777888888888877765  66777777777753       


Q ss_pred             --cCCChhHHHHHHHHH
Q 045108          241 --HVADNSCFHYHRRLM  255 (425)
Q Consensus       241 --d~~N~SaW~yR~~ll  255 (425)
                        ++.+...|.....+.
T Consensus       232 ~~~~~~~~~~~~~~~~~  248 (311)
T 3nf1_A          232 SVDDENKPIWMHAEERE  248 (311)
T ss_dssp             ------CCHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHH
Confidence              344445555544443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.29  E-value=0.037  Score=41.28  Aligned_cols=83  Identities=12%  Similarity=-0.009  Sum_probs=67.9

Q ss_pred             CchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC
Q 045108          165 KSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVAD  244 (425)
Q Consensus       165 Ksy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N  244 (425)
                      .+..+|.....+......        +.+.+..+.++++.+|.+..+|.....+....+.  +++.+..+.+.+..+|.+
T Consensus         7 ~~~~~~~~la~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~p~~   76 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGD--------YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD--YDEAIEYYQKALELDPNN   76 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTC
T ss_pred             ccHHHHHHHHHHHHHccC--------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--HHHHHHHHHHHHhcCCCC
Confidence            345667666666555443        6889999999999999999999999999887765  788999999999999999


Q ss_pred             hhHHHHHHHHHHH
Q 045108          245 NSCFHYHRRLMIW  257 (425)
Q Consensus       245 ~SaW~yR~~ll~~  257 (425)
                      ..+|..+..+...
T Consensus        77 ~~~~~~l~~~~~~   89 (91)
T 1na3_A           77 AEAKQNLGNAKQK   89 (91)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999887766543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.22  E-value=0.015  Score=44.71  Aligned_cols=59  Identities=8%  Similarity=-0.000  Sum_probs=36.6

Q ss_pred             cHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhH
Q 045108          148 ILMDELRLSAVVLSHSPKSEQ-AWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNH  214 (425)
Q Consensus       148 ~l~~EL~~~~~lL~~~PKsy~-~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~h  214 (425)
                      .+.+++..+..++..+|++.. +|..+..++..++.        +++.+..+.++++.+|.+..+|.+
T Consensus        15 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~   74 (99)
T 2kc7_A           15 DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGD--------WQKALNNYQSAIELNPDSPALQAR   74 (99)
T ss_dssp             CHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcCCCcHHHHHH
Confidence            456666666666666666666 66666666555443        456666666666666666666543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.18  E-value=0.015  Score=45.80  Aligned_cols=73  Identities=11%  Similarity=0.014  Sum_probs=61.4

Q ss_pred             hCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhc
Q 045108          162 HSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLH  241 (425)
Q Consensus       162 ~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d  241 (425)
                      .+|+++.+|.....++...+.        +++.+..+.++++.+|.+..+|...+.+...++.  +++.++.+++.+...
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~l~   71 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDN--------ASRALALFEELVETDPDYVGTYYHLGKLYERLDR--TDDAIDTYAQGIEVA   71 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhh
Confidence            579999999999998887665        6899999999999999999999999999988876  678888889888876


Q ss_pred             CCC
Q 045108          242 VAD  244 (425)
Q Consensus       242 ~~N  244 (425)
                      +.+
T Consensus        72 ~~~   74 (100)
T 3ma5_A           72 REE   74 (100)
T ss_dssp             HHH
T ss_pred             hcC
Confidence            543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=96.16  E-value=0.088  Score=47.30  Aligned_cols=130  Identities=8%  Similarity=-0.039  Sum_probs=100.5

Q ss_pred             hHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhh--------CCCchhhhhHHHH
Q 045108          112 AIEVMIHSKALLLL--------SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSH--------SPKSEQAWSHRRW  175 (425)
Q Consensus       112 ~~~~L~~t~~lLl~--------npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~--------~PKsy~~W~hRrw  175 (425)
                      .++++.....++.+        +|....+++....+....   ..+++++..+..++..        +|....++.....
T Consensus        59 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  135 (283)
T 3edt_B           59 YKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKR---GKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLAL  135 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            46788888888877        577788888888888877   4789999999999887        5777788888887


Q ss_pred             HHHHHhhccchhHHhHHHHHHHHHHHHHh--------cCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhh-------
Q 045108          176 VINMISRNCSTLQWIIERESELVEKIAER--------SKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGL-------  240 (425)
Q Consensus       176 ll~~l~~~~~~~~~~~~~EL~~~~~~l~~--------~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~-------  240 (425)
                      +....+.        +++.+.++.++++.        +|.+..++.....+....+.  +++.+....+.+..       
T Consensus       136 ~~~~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~~~~~~~  205 (283)
T 3edt_B          136 LCQNQGK--------AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK--YQDAETLYKEILTRAHEKEFG  205 (283)
T ss_dssp             HHHTTTC--------HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHcCC--------HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcCC
Confidence            7776654        67888888888888        88888889888888877765  67778888887775       


Q ss_pred             --cCCChhHHHHHHHH
Q 045108          241 --HVADNSCFHYHRRL  254 (425)
Q Consensus       241 --d~~N~SaW~yR~~l  254 (425)
                        ++.+...|.....+
T Consensus       206 ~~~~~~~~~~~~~~~~  221 (283)
T 3edt_B          206 SVNGDNKPIWMHAEER  221 (283)
T ss_dssp             SCCSSCCCHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHH
Confidence              55566666655443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=95.97  E-value=0.054  Score=41.88  Aligned_cols=83  Identities=1%  Similarity=-0.139  Sum_probs=65.2

Q ss_pred             chhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC-
Q 045108          166 SEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVAD-  244 (425)
Q Consensus       166 sy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N-  244 (425)
                      +..+|..+..+....+.        +.+.+..+.++++.+|.+..+|..++.+...++.  +.+.++.+++.+..+|.+ 
T Consensus         3 ~~~~~~~~g~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~   72 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGL--------YREAVHCYDQLITAQPQNPVGYSNKAMALIKLGE--YTQAIQMCQQGLRYTSTAE   72 (111)
T ss_dssp             HHHHHHHHHHHHHTTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTSCSSTT
T ss_pred             hHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhCCCcc
Confidence            34556666655554433        7899999999999999999999999999988876  789999999999999999 


Q ss_pred             -----hhHHHHHHHHHHHh
Q 045108          245 -----NSCFHYHRRLMIWN  258 (425)
Q Consensus       245 -----~SaW~yR~~ll~~l  258 (425)
                           ..++..+..+...+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~   91 (111)
T 2l6j_A           73 HVAIRSKLQYRLELAQGAV   91 (111)
T ss_dssp             SHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence                 55666555555443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=95.87  E-value=0.024  Score=43.60  Aligned_cols=58  Identities=9%  Similarity=-0.090  Sum_probs=53.1

Q ss_pred             hHHHHHHHHHHHHhCCccHH-HHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhH
Q 045108          112 AIEVMIHSKALLLLSCDFAT-AWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSH  172 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~T-aWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~h  172 (425)
                      .++++.....++..+|++.. +|..+..++...+   .+++++..+..++..+|++..+|.+
T Consensus        16 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~   74 (99)
T 2kc7_A           16 IENALQALEEFLQTEPVGKDEAYYLMGNAYRKLG---DWQKALNNYQSAIELNPDSPALQAR   74 (99)
T ss_dssp             HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            47799999999999999999 9999999988774   7899999999999999999999865

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=95.82  E-value=1.1  Score=40.80  Aligned_cols=163  Identities=6%  Similarity=-0.146  Sum_probs=114.3

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccC-CcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQ-LLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~-~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~  190 (425)
                      .++++.....++.  |.+..++.....+..... ...++++.+.+...++..+  +..+|.....+...-..    ....
T Consensus        22 ~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~----~~~~   93 (273)
T 1ouv_A           22 FTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQG----VSQN   93 (273)
T ss_dssp             HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS----SCCC
T ss_pred             HHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCC----cccC
Confidence            4678888888877  788899999888887711 1247899999999999875  78888888877765110    0113


Q ss_pred             HHHHHHHHHHHHHhcCCchhhhhHHHHHHHh----hchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccC
Q 045108          191 IERESELVEKIAERSKMNYRAWNHRCWLVSF----MTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQ  266 (425)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~----~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~  266 (425)
                      +.+.+..+.++++.+  +..++.....+...    .+  +.++.+.+..+.++.+  +..++.....+...-...     
T Consensus        94 ~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~--~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~-----  162 (273)
T 1ouv_A           94 TNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTR--DFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGT-----  162 (273)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCC--CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS-----
T ss_pred             HHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCccc--CHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCC-----
Confidence            678888999998874  78888888888876    44  3788899999999876  667777776665541100     


Q ss_pred             CCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 045108          267 DNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRR  306 (425)
Q Consensus       267 ~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr  306 (425)
                                 ..-+++.+.+..+.+..  ++..+++..-
T Consensus       163 -----------~~~~~~A~~~~~~a~~~--~~~~a~~~lg  189 (273)
T 1ouv_A          163 -----------PKDLKKALASYDKACDL--KDSPGCFNAG  189 (273)
T ss_dssp             -----------CCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred             -----------CCCHHHHHHHHHHHHHC--CCHHHHHHHH
Confidence                       01256667777777765  3455555543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=95.72  E-value=0.1  Score=50.38  Aligned_cols=118  Identities=7%  Similarity=-0.066  Sum_probs=88.2

Q ss_pred             hHHHHHHHHHHHHhCCccH----HHHHHHHHHHHccCCcccHHHHHHHHHHHHhh------CCCchhhhhHHHHHHHHHh
Q 045108          112 AIEVMIHSKALLLLSCDFA----TAWNSRKLIVSNKQLLPILMDELRLSAVVLSH------SPKSEQAWSHRRWVINMIS  181 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~----TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~------~PKsy~~W~hRrwll~~l~  181 (425)
                      .++++.....++.++|++.    .+|+....+....   ..+++.+..+..++..      +|....+|.....+....+
T Consensus        64 ~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g  140 (411)
T 4a1s_A           64 CRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYL---GDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG  140 (411)
T ss_dssp             HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence            4789999999999999987    5788888887776   4789999999999886      5777788888888777665


Q ss_pred             hccchhHHhHHHHHHHHHHHHHh------cCCchhhhhHHHHHHHhhch---------------hhHHHHHHHHHHHHhh
Q 045108          182 RNCSTLQWIIERESELVEKIAER------SKMNYRAWNHRCWLVSFMTR---------------EQVLNELKQSRNWSGL  240 (425)
Q Consensus       182 ~~~~~~~~~~~~EL~~~~~~l~~------~pkNY~AW~hR~wll~~~~~---------------~~~~~EL~~~~~~i~~  240 (425)
                      .        +.+.+..+.++++.      +|....++.....+....+.               ..++..+.++.+.+..
T Consensus       141 ~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~  212 (411)
T 4a1s_A          141 R--------FDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL  212 (411)
T ss_dssp             C--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             C--------HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence            4        56777777777777      56666677777777766543               0155666666666554

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=95.70  E-value=0.17  Score=48.19  Aligned_cols=101  Identities=6%  Similarity=-0.098  Sum_probs=72.2

Q ss_pred             hHHHHHHHHHHHHhCCccH----HHHHHHHHHHHccCCcccHHHHHHHHHHHHhh------CCCchhhhhHHHHHHHHHh
Q 045108          112 AIEVMIHSKALLLLSCDFA----TAWNSRKLIVSNKQLLPILMDELRLSAVVLSH------SPKSEQAWSHRRWVINMIS  181 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~----TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~------~PKsy~~W~hRrwll~~l~  181 (425)
                      .++++.....++.++|++.    .+|.....+....   ..+.+.+..+..++..      .|....+|.....+....+
T Consensus        25 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  101 (406)
T 3sf4_A           25 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYL---HDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG  101 (406)
T ss_dssp             HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC
Confidence            4778899999999999984    5777777777766   4788899988888765      3444566777776666554


Q ss_pred             hccchhHHhHHHHHHHHHHHHHhcCCchh------hhhHHHHHHHhhc
Q 045108          182 RNCSTLQWIIERESELVEKIAERSKMNYR------AWNHRCWLVSFMT  223 (425)
Q Consensus       182 ~~~~~~~~~~~~EL~~~~~~l~~~pkNY~------AW~hR~wll~~~~  223 (425)
                      .        +.+.+.++.++++..|++-.      ++.....+....+
T Consensus       102 ~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g  141 (406)
T 3sf4_A          102 N--------FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG  141 (406)
T ss_dssp             C--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             C--------HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC
Confidence            4        57777788888887776533      6666666665544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=95.41  E-value=1.1  Score=40.56  Aligned_cols=149  Identities=4%  Similarity=-0.154  Sum_probs=105.6

Q ss_pred             CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhc
Q 045108          126 SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS  205 (425)
Q Consensus       126 npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~  205 (425)
                      +|.+..++.....+.....   .+++++.++..++.  |.+..+|.....+...-..    ....+++.+.+..++++.+
T Consensus         2 ~~~~~~a~~~lg~~~~~~~---~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~----~~~~~~~A~~~~~~a~~~~   72 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEK---DFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQG----VEKNLKKAASFYAKACDLN   72 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSS----SCCCHHHHHHHHHHHHHTT
T ss_pred             CCCChHHHHHHHHHHHhCC---CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCC----cCCCHHHHHHHHHHHHHCC
Confidence            5788889988888887773   78999999999998  7888898888777665110    0113688899999999886


Q ss_pred             CCchhhhhHHHHHHHh----hchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHH
Q 045108          206 KMNYRAWNHRCWLVSF----MTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVW  281 (425)
Q Consensus       206 pkNY~AW~hR~wll~~----~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~  281 (425)
                        +..+|.....+...    .+  .+.+.+.+.++.+..+  +..++..+..+...-.+.                ..-+
T Consensus        73 --~~~a~~~lg~~~~~g~~~~~--~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~----------------~~~~  130 (273)
T 1ouv_A           73 --YSNGCHLLGNLYYSGQGVSQ--NTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVV----------------TRDF  130 (273)
T ss_dssp             --CHHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSS----------------CCCH
T ss_pred             --CHHHHHHHHHHHhCCCCccc--CHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCc----------------ccCH
Confidence              78888888888776    44  3778899999999874  778888887776541100                0125


Q ss_pred             HHHHHHHHHHHhhcCCCccHHHHHHH
Q 045108          282 KEELDWNESLIKRYVGREALWLHRRF  307 (425)
Q Consensus       282 ~~EL~~~~~~I~~~p~neSaW~yrr~  307 (425)
                      ++.+.+..+++..+  +..++...-.
T Consensus       131 ~~A~~~~~~a~~~~--~~~a~~~lg~  154 (273)
T 1ouv_A          131 KKAVEYFTKACDLN--DGDGCTILGS  154 (273)
T ss_dssp             HHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC--cHHHHHHHHH
Confidence            66677777887765  4556655433

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=95.13  E-value=0.38  Score=43.98  Aligned_cols=101  Identities=6%  Similarity=-0.098  Sum_probs=72.9

Q ss_pred             hHHHHHHHHHHHHhCCccH----HHHHHHHHHHHccCCcccHHHHHHHHHHHHhh------CCCchhhhhHHHHHHHHHh
Q 045108          112 AIEVMIHSKALLLLSCDFA----TAWNSRKLIVSNKQLLPILMDELRLSAVVLSH------SPKSEQAWSHRRWVINMIS  181 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~----TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~------~PKsy~~W~hRrwll~~l~  181 (425)
                      .++++.....++..+|++.    .++.....+....   ..+.+.+..+..++..      .|....+|.....+....+
T Consensus        21 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g   97 (338)
T 3ro2_A           21 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYL---HDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG   97 (338)
T ss_dssp             HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc
Confidence            4789999999999999984    6777777777766   4788999999888775      4445566666666666554


Q ss_pred             hccchhHHhHHHHHHHHHHHHHhcCCchh------hhhHHHHHHHhhc
Q 045108          182 RNCSTLQWIIERESELVEKIAERSKMNYR------AWNHRCWLVSFMT  223 (425)
Q Consensus       182 ~~~~~~~~~~~~EL~~~~~~l~~~pkNY~------AW~hR~wll~~~~  223 (425)
                      .        +.+.+..+.++++..++.-.      ++.....+....+
T Consensus        98 ~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~  137 (338)
T 3ro2_A           98 N--------FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG  137 (338)
T ss_dssp             C--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             C--------HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC
Confidence            3        57778888888887665533      6666666665544

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=95.10  E-value=0.29  Score=46.20  Aligned_cols=164  Identities=5%  Similarity=-0.100  Sum_probs=101.4

Q ss_pred             hHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc------hhhhhHHHHHHHH
Q 045108          112 AIEVMIHSKALLLLSCDF------ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS------EQAWSHRRWVINM  179 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~------~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs------y~~W~hRrwll~~  179 (425)
                      .++++.....++.+.+..      ..+++....+....   ..+.+++..+..++...++.      ..+++....+...
T Consensus        52 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~---g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~  128 (307)
T 2ifu_A           52 LEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDL---QRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP  128 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc
Confidence            466777777777776533      44566666666665   36788888888888764432      2334444444433


Q ss_pred             HhhccchhHHhHHHHHHHHHHHHHhcCCc------hhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHH
Q 045108          180 ISRNCSTLQWIIERESELVEKIAERSKMN------YRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRR  253 (425)
Q Consensus       180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkN------Y~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~  253 (425)
                       +        .+++.+.+..++++..|..      ..++.....+...++.  +.+.+..+++.+...+.+..-+..-..
T Consensus       129 -g--------~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~  197 (307)
T 2ifu_A          129 -L--------DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK--FDEAAASLQKEKSMYKEMENYPTCYKK  197 (307)
T ss_dssp             -T--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             -C--------CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCChhHHHHH
Confidence             2        3688889999999888764      3566666777666664  788899999999987765442211111


Q ss_pred             HHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHH
Q 045108          254 LMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLH  304 (425)
Q Consensus       254 ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~y  304 (425)
                      .+......              ....-+.+.+.+..+.+ .+|++......
T Consensus       198 ~~~~g~~~--------------~~~g~~~~A~~~~~~al-~~p~~~~~~e~  233 (307)
T 2ifu_A          198 CIAQVLVQ--------------LHRADYVAAQKCVRESY-SIPGFSGSEDC  233 (307)
T ss_dssp             HHHHHHHH--------------HHTTCHHHHHHHHHHHT-TSTTSTTSHHH
T ss_pred             HHHHHHHH--------------HHcCCHHHHHHHHHHHh-CCCCCCCCHHH
Confidence            11110000              00012567788888999 89987765543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=95.06  E-value=0.27  Score=47.48  Aligned_cols=133  Identities=6%  Similarity=-0.129  Sum_probs=97.3

Q ss_pred             hHHHHHHHHHHHHh------CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCch-------hhhhHHHHHHH
Q 045108          112 AIEVMIHSKALLLL------SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE-------QAWSHRRWVIN  178 (425)
Q Consensus       112 ~~~~L~~t~~lLl~------npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy-------~~W~hRrwll~  178 (425)
                      .++++.....++.+      ++....+++..+.+....   ..+.+++.....++...++..       .+++....+..
T Consensus       119 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~  195 (383)
T 3ulq_A          119 YLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYM---KQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL  195 (383)
T ss_dssp             HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence            47788888888887      334567888888888777   478999999999998765553       34444455555


Q ss_pred             HHhhccchhHHhHHHHHHHHHHHHHhcCCch------hhhhHHHHHHHhhchhhHHHHHHHHHHHHh-----hc-CCChh
Q 045108          179 MISRNCSTLQWIIERESELVEKIAERSKMNY------RAWNHRCWLVSFMTREQVLNELKQSRNWSG-----LH-VADNS  246 (425)
Q Consensus       179 ~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY------~AW~hR~wll~~~~~~~~~~EL~~~~~~i~-----~d-~~N~S  246 (425)
                      .++.        +++.+....++++..+++-      .++...+++...++.  ++..+.+..+.+.     .+ |....
T Consensus       196 ~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~  265 (383)
T 3ulq_A          196 DLKQ--------YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ--YEDAIPYFKRAIAVFEESNILPSLPQ  265 (383)
T ss_dssp             HTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred             HhcC--------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHhhccchhHHH
Confidence            4443        6888888888888876554      477778888877765  7888899999888     45 66666


Q ss_pred             HHHHHHHHHHH
Q 045108          247 CFHYHRRLMIW  257 (425)
Q Consensus       247 aW~yR~~ll~~  257 (425)
                      ++.....+...
T Consensus       266 ~~~~l~~~~~~  276 (383)
T 3ulq_A          266 AYFLITQIHYK  276 (383)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777766655

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=94.72  E-value=0.41  Score=45.57  Aligned_cols=120  Identities=9%  Similarity=-0.064  Sum_probs=86.9

Q ss_pred             hHHHHHHHHHHHHh------CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchh------hhhHHHHHHHH
Q 045108          112 AIEVMIHSKALLLL------SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQ------AWSHRRWVINM  179 (425)
Q Consensus       112 ~~~~L~~t~~lLl~------npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~------~W~hRrwll~~  179 (425)
                      .++++.....++.+      .|....+++....+....   ..+++.+..+..++...|+...      +|.....+...
T Consensus       163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  239 (406)
T 3sf4_A          163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLL---GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF  239 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            45666777777666      555567788888877776   4789999999999987766554      66666666665


Q ss_pred             HhhccchhHHhHHHHHHHHHHHHHhcCCc------hhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC
Q 045108          180 ISRNCSTLQWIIERESELVEKIAERSKMN------YRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVAD  244 (425)
Q Consensus       180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkN------Y~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N  244 (425)
                      .+.        +.+.+..+.++++..|++      ..++.....+....+.  +.+.+.++.+.+...+..
T Consensus       240 ~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~~  300 (406)
T 3sf4_A          240 LGE--------FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD--YEKAIDYHLKHLAIAQEL  300 (406)
T ss_dssp             TTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHT
T ss_pred             cCC--------hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHhc
Confidence            543        678888888888888776      5666677777666554  677788888887765544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=94.40  E-value=0.64  Score=44.69  Aligned_cols=119  Identities=4%  Similarity=-0.077  Sum_probs=86.6

Q ss_pred             CccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCch----hhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHH
Q 045108          127 CDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE----QAWSHRRWVINMISRNCSTLQWIIERESELVEKIA  202 (425)
Q Consensus       127 pe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy----~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l  202 (425)
                      +.....+..+...+...   ..+.+++.++..++..+|++.    .+|.....+....+.        +++.+.++.+++
T Consensus        45 ~~~~~~l~~~g~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al  113 (411)
T 4a1s_A           45 SSMCLELALEGERLCNA---GDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGD--------YNKAMQYHKHDL  113 (411)
T ss_dssp             HHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHh---CcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHH
Confidence            44445555566666655   478999999999999999987    467677766666544        577788888888


Q ss_pred             Hh------cCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhh------cCCChhHHHHHHHHHHHh
Q 045108          203 ER------SKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGL------HVADNSCFHYHRRLMIWN  258 (425)
Q Consensus       203 ~~------~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~------d~~N~SaW~yR~~ll~~l  258 (425)
                      +.      +|....+|.....+....+.  +...+..+.+.+..      ++....++..+..+....
T Consensus       114 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~  179 (411)
T 4a1s_A          114 TLAKSMNDRLGEAKSSGNLGNTLKVMGR--FDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK  179 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCchHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc
Confidence            77      68888899999888887775  66777777777776      455555777766666543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=94.21  E-value=0.39  Score=43.84  Aligned_cols=120  Identities=9%  Similarity=-0.069  Sum_probs=82.2

Q ss_pred             hHHHHHHHHHHHHh------CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchh------hhhHHHHHHHH
Q 045108          112 AIEVMIHSKALLLL------SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQ------AWSHRRWVINM  179 (425)
Q Consensus       112 ~~~~L~~t~~lLl~------npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~------~W~hRrwll~~  179 (425)
                      .++++.....++.+      .|....++.....+....   ..+++.+..+..++...|+...      +|.....+...
T Consensus       159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  235 (338)
T 3ro2_A          159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLL---GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF  235 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence            45566666666655      444456777777777666   4789999999999887665443      66666666665


Q ss_pred             HhhccchhHHhHHHHHHHHHHHHHhcCCc------hhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC
Q 045108          180 ISRNCSTLQWIIERESELVEKIAERSKMN------YRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVAD  244 (425)
Q Consensus       180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkN------Y~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N  244 (425)
                      .+.        +.+.+.++.++++..+++      ..++.....+....+.  +.+.+.+..+.+...+..
T Consensus       236 ~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~~  296 (338)
T 3ro2_A          236 LGE--------FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD--YEKAIDYHLKHLAIAQEL  296 (338)
T ss_dssp             HTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHH
T ss_pred             cCC--------HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHhc
Confidence            543        577888888888877766      5566666666666554  677788888887765443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=93.00  E-value=0.46  Score=45.56  Aligned_cols=166  Identities=7%  Similarity=-0.124  Sum_probs=103.5

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHH-------HHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhH-HH---------
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSR-------KLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSH-RR---------  174 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~R-------r~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~h-Rr---------  174 (425)
                      ...+++....++.++|+...+|+-|       ..+|....   ...+.+......+...|.....|.. -.         
T Consensus        22 ~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~---r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v   98 (282)
T 4f3v_A           22 EARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAW---YSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV   98 (282)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHH---HTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred             HHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHH---HHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence            5779999999999999999999999       77777663   2345566666777777777666665 11         


Q ss_pred             -----------HHHHHHhhccc-----------hh--------------HHhHHHHHHHHHHHHHhcCCch---hhhhHH
Q 045108          175 -----------WVINMISRNCS-----------TL--------------QWIIERESELVEKIAERSKMNY---RAWNHR  215 (425)
Q Consensus       175 -----------wll~~l~~~~~-----------~~--------------~~~~~~EL~~~~~~l~~~pkNY---~AW~hR  215 (425)
                                 -++...+....           .+              ...|.+.+..+..+... |.++   .++.+.
T Consensus        99 ~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~d~~~~~~a~~~L  177 (282)
T 4f3v_A           99 TSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-PDKFLAGAAGVAH  177 (282)
T ss_dssp             SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-SCHHHHHHHHHHH
T ss_pred             CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-CCcccHHHHHHHH
Confidence                       11111111000           00              01234444444433332 2332   367777


Q ss_pred             HHHHHhhchhhHHHHHHHHHHHHhhc--CC-ChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHH
Q 045108          216 CWLVSFMTREQVLNELKQSRNWSGLH--VA-DNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLI  292 (425)
Q Consensus       216 ~wll~~~~~~~~~~EL~~~~~~i~~d--~~-N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I  292 (425)
                      +-++..++.  +.+.+....+.+...  |. ...++.++..++.++ +.                   .++.....++++
T Consensus       178 G~al~~LG~--~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~l-Gr-------------------~deA~~~l~~a~  235 (282)
T 4f3v_A          178 GVAAANLAL--FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQ-GN-------------------ESAAVALLEWLQ  235 (282)
T ss_dssp             HHHHHHTTC--HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHH-TC-------------------HHHHHHHHHHHH
T ss_pred             HHHHHHCCC--HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHc-CC-------------------HHHHHHHHHHHH
Confidence            777777665  677788888877544  44 335788888777764 21                   456677788888


Q ss_pred             hhcCCCccHHHH
Q 045108          293 KRYVGREALWLH  304 (425)
Q Consensus       293 ~~~p~neSaW~y  304 (425)
                      ..+|. .-+|..
T Consensus       236 a~~P~-~~~~~a  246 (282)
T 4f3v_A          236 TTHPE-PKVAAA  246 (282)
T ss_dssp             HHSCC-HHHHHH
T ss_pred             hcCCc-HHHHHH
Confidence            99998 655544

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=92.65  E-value=1.3  Score=44.15  Aligned_cols=122  Identities=9%  Similarity=-0.013  Sum_probs=74.3

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccC--C-c-----ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhc
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQ--L-L-----PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRN  183 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~--~-~-----~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~  183 (425)
                      ..+++.+.+.++.++|++..||-.+..+.....  . .     ..+..++. -...+...|..+.+  |..-.+..+.. 
T Consensus       215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~-a~~a~~~~~~~a~~--~~alal~~l~~-  290 (372)
T 3ly7_A          215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID-NIVTLPELNNLSII--YQIKAVSALVK-  290 (372)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-HHHTCGGGTTCHHH--HHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH-HHHhcccCCcCHHH--HHHHHHHHHhC-
Confidence            466777778888888888777765543221100  0 0     01112222 11122344554433  33322222222 


Q ss_pred             cchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCh
Q 045108          184 CSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADN  245 (425)
Q Consensus       184 ~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~  245 (425)
                           ..++..+..+.+++..+| |..+|.-.+|+....+.  +++.++.+.+.+.++|++.
T Consensus       291 -----gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~--~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          291 -----GKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGM--NREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             -----TCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSCSHH
T ss_pred             -----CCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCcC
Confidence                 236888899999999996 57788888888887776  6888999999999999874

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=92.16  E-value=4.2  Score=43.59  Aligned_cols=164  Identities=9%  Similarity=-0.047  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHH-HHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDEL-RLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       113 ~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL-~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++...++.+|..+|.++.+|..-.+++...+   ...+.. .++..++..+|++..+|-.--.+....+.        +
T Consensus       326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~---~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~--------~  394 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKN---TDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTK--------I  394 (679)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS---CCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC--------H
Confidence            34567899999999999999998888776653   345675 88899999999999999766665555443        2


Q ss_pred             HHHHHHHHHHHHh-----------cCC-----------chhhhhHHHHHHHhhchhhHHHHHHHHHHHHhh-cCCChhHH
Q 045108          192 ERESELVEKIAER-----------SKM-----------NYRAWNHRCWLVSFMTREQVLNELKQSRNWSGL-HVADNSCF  248 (425)
Q Consensus       192 ~~EL~~~~~~l~~-----------~pk-----------NY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~-d~~N~SaW  248 (425)
                      +..-++.+++++.           .|.           +-.+|..-.-+..+.+.  +...-+...+.++. .......|
T Consensus       395 e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~--l~~AR~vf~~A~~~~~~~~~~ly  472 (679)
T 4e6h_A          395 PEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG--LAASRKIFGKCRRLKKLVTPDIY  472 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHTGGGSCTHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhcCCCChHHH
Confidence            3333344444432           243           23467765544444332  34555566666665 33445555


Q ss_pred             HHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHH-HHHHHH
Q 045108          249 HYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALW-LHRRFL  308 (425)
Q Consensus       249 ~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW-~yrr~L  308 (425)
                      -.-..+-.+..+        +           .+........++...|++...| .|..++
T Consensus       473 i~~A~lE~~~~~--------d-----------~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe  514 (679)
T 4e6h_A          473 LENAYIEYHISK--------D-----------TKTACKVLELGLKYFATDGEYINKYLDFL  514 (679)
T ss_dssp             HHHHHHHHTTTS--------C-----------CHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC--------C-----------HHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence            433322222100        0           1223333455666678888888 454443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=91.81  E-value=4.8  Score=37.08  Aligned_cols=134  Identities=8%  Similarity=-0.052  Sum_probs=84.7

Q ss_pred             hHHHHHHHHHHHHhCCccHH----H-HHH-HHHHHHccCCcccHHHHHHHHHHHHhhCCCchh------hhhHHHHHHHH
Q 045108          112 AIEVMIHSKALLLLSCDFAT----A-WNS-RKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQ------AWSHRRWVINM  179 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~T----a-Wn~-Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~------~W~hRrwll~~  179 (425)
                      .++++.....++...+....    + |.+ .+.+...   ...+++++.....++...++...      +++.-..+...
T Consensus        91 y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~  167 (293)
T 3u3w_A           91 YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK---KVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE  167 (293)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT---SSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHc---ccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence            46788888888887765544    2 222 2222222   24789999999999997666554      34444444443


Q ss_pred             HhhccchhHHhHHHHHHHHHHHHHh-------cCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC------hh
Q 045108          180 ISRNCSTLQWIIERESELVEKIAER-------SKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVAD------NS  246 (425)
Q Consensus       180 l~~~~~~~~~~~~~EL~~~~~~l~~-------~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N------~S  246 (425)
                      .+.        +++.+.+..++++.       .+....++...+.+....+.  +++.+.++.+.+...+..      -.
T Consensus       168 ~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~--y~~A~~~~~~al~~~~~~~~~~~~~~  237 (293)
T 3u3w_A          168 NGY--------LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR--YEESLYQVNKAIEISCRINSMALIGQ  237 (293)
T ss_dssp             TTC--------HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred             cCC--------HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence            332        67778888888742       23333477777888777665  788899998888866443      34


Q ss_pred             HHHHHHHHHHHh
Q 045108          247 CFHYHRRLMIWN  258 (425)
Q Consensus       247 aW~yR~~ll~~l  258 (425)
                      ++..+..+...+
T Consensus       238 ~~~~lg~~~~~~  249 (293)
T 3u3w_A          238 LYYQRGECLRKL  249 (293)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            566666665543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=91.34  E-value=1  Score=35.27  Aligned_cols=74  Identities=12%  Similarity=-0.032  Sum_probs=41.5

Q ss_pred             CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhc
Q 045108          126 SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS  205 (425)
Q Consensus       126 npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~  205 (425)
                      +|++..+|..+..++.-..+.....+...++..+|..+|++..++.....+..+.+.        +.+.+....++++.+
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~--------y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFR--------FQEAIDTWVLLLDSN   73 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHTCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhC
Confidence            456666666666555321111223556666666666666666666665555444332        566666666666666


Q ss_pred             CC
Q 045108          206 KM  207 (425)
Q Consensus       206 pk  207 (425)
                      |.
T Consensus        74 p~   75 (93)
T 3bee_A           74 DP   75 (93)
T ss_dssp             CT
T ss_pred             CC
Confidence            65

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=90.77  E-value=8  Score=38.38  Aligned_cols=156  Identities=9%  Similarity=-0.070  Sum_probs=94.9

Q ss_pred             HHHHhCCccHHHHHH--HHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhcc--c-hhHHhHHHHH
Q 045108          121 ALLLLSCDFATAWNS--RKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNC--S-TLQWIIERES  195 (425)
Q Consensus       121 ~lLl~npe~~TaWn~--Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~--~-~~~~~~~~EL  195 (425)
                      .+...-|++.+||..  |.+-+........+.+.+.+++.++...|.+..+|..+-++.-.+....  . .....+..++
T Consensus       185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~  264 (372)
T 3ly7_A          185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI  264 (372)
T ss_dssp             HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence            345667888888875  4332222212356789999999999999999999998887665333221  1 0111223333


Q ss_pred             HHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchh
Q 045108          196 ELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFV  275 (425)
Q Consensus       196 ~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~  275 (425)
                      .-+ .++..+|....+  |....+..+....++..+...++.+.++++ .-+|..+.++.. +.+               
T Consensus       265 ~a~-~a~~~~~~~a~~--~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~-~~G---------------  324 (372)
T 3ly7_A          265 DNI-VTLPELNNLSII--YQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYE-MKG---------------  324 (372)
T ss_dssp             HHH-HTCGGGTTCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH-HTT---------------
T ss_pred             HHH-HhcccCCcCHHH--HHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHH-HCC---------------
Confidence            311 234556665444  433333222223478899999999999853 344444444332 212               


Q ss_pred             hhhHHHHHHHHHHHHHHhhcCCCcc
Q 045108          276 ETYQVWKEELDWNESLIKRYVGREA  300 (425)
Q Consensus       276 ~~~~~~~~EL~~~~~~I~~~p~neS  300 (425)
                          .+++.++...+++.++|+.+.
T Consensus       325 ----~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          325 ----MNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             ----CHHHHHHHHHHHHHHSCSHHH
T ss_pred             ----CHHHHHHHHHHHHhcCCCcCh
Confidence                267778888999999999863

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=90.74  E-value=1.6  Score=41.92  Aligned_cols=117  Identities=6%  Similarity=-0.099  Sum_probs=88.8

Q ss_pred             hHHHHHHHHHHHHhCCc-------cHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCch------hhhhHHHHHHH
Q 045108          112 AIEVMIHSKALLLLSCD-------FATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE------QAWSHRRWVIN  178 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe-------~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy------~~W~hRrwll~  178 (425)
                      .++++.....++.+.++       ...+++..+.+....   +.+++++.....++...|+..      .+++...++..
T Consensus       159 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~  235 (383)
T 3ulq_A          159 TYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDL---KQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN  235 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            46778888888887443       345777777777776   478999999999998766554      46777777776


Q ss_pred             HHhhccchhHHhHHHHHHHHHHHHH-----hc-CCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhc
Q 045108          179 MISRNCSTLQWIIERESELVEKIAE-----RS-KMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLH  241 (425)
Q Consensus       179 ~l~~~~~~~~~~~~~EL~~~~~~l~-----~~-pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d  241 (425)
                      .++.        +++.+..+.++++     .+ |....++...+.+....+.  ++..+.+.++.+...
T Consensus       236 ~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~  294 (383)
T 3ulq_A          236 SQSQ--------YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK--IDKAHEYHSKGMAYS  294 (383)
T ss_dssp             HTTC--------HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHH
T ss_pred             HCCC--------HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHH
Confidence            6654        6888888999988     56 7788888888888877765  677888888887764

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=89.81  E-value=12  Score=34.35  Aligned_cols=133  Identities=11%  Similarity=-0.054  Sum_probs=88.5

Q ss_pred             hHHHHHHHHHHHHhCCccHH-----HHHH-HHHHHHccCCcccHHHHHHHHHHHHhhCCCc------hhhhhHHHHHHHH
Q 045108          112 AIEVMIHSKALLLLSCDFAT-----AWNS-RKLIVSNKQLLPILMDELRLSAVVLSHSPKS------EQAWSHRRWVINM  179 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~T-----aWn~-Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs------y~~W~hRrwll~~  179 (425)
                      .+++++....++...|....     .|.+ ...+....   ..+++++.....+|...++.      ..+++....+...
T Consensus        91 y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~  167 (293)
T 2qfc_A           91 YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK---VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE  167 (293)
T ss_dssp             HHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTS---SCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence            47788888888888776432     2322 22333333   47899999999999877666      3466666666665


Q ss_pred             HhhccchhHHhHHHHHHHHHHHH---HhcCCch----hhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC------hh
Q 045108          180 ISRNCSTLQWIIERESELVEKIA---ERSKMNY----RAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVAD------NS  246 (425)
Q Consensus       180 l~~~~~~~~~~~~~EL~~~~~~l---~~~pkNY----~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N------~S  246 (425)
                      .+.        +++.+.++.+++   +..|.+.    .++...+.+....+.  +++.+.++++.+......      ..
T Consensus       168 ~~~--------~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~--y~~Al~~~~kal~~~~~~~~~~~~~~  237 (293)
T 2qfc_A          168 NGY--------LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR--YEESLYQVNKAIEISCRINSMALIGQ  237 (293)
T ss_dssp             TTC--------HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred             cCC--------HHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh--HHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            543        678888888888   5566543    577778888877665  788899998888765321      23


Q ss_pred             HHHHHHHHHHH
Q 045108          247 CFHYHRRLMIW  257 (425)
Q Consensus       247 aW~yR~~ll~~  257 (425)
                      ++.....+...
T Consensus       238 ~~~~lg~~y~~  248 (293)
T 2qfc_A          238 LYYQRGECLRK  248 (293)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            45555544444

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=89.31  E-value=2.3  Score=33.10  Aligned_cols=55  Identities=11%  Similarity=-0.060  Sum_probs=49.7

Q ss_pred             ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc
Q 045108          109 DTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS  166 (425)
Q Consensus       109 ~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs  166 (425)
                      +..++++......+|.++|++..++...+......   +.+++++.....+|..+|.+
T Consensus        22 ~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~---g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A           22 QAMTDEVSLLLEQALQLEPYNEAALSLIANDHFIS---FRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCC
Confidence            34578999999999999999999999999888777   48999999999999999993

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=88.62  E-value=3.7  Score=38.37  Aligned_cols=124  Identities=7%  Similarity=-0.059  Sum_probs=84.2

Q ss_pred             hHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc------hhhhhHHHHHHHH
Q 045108          112 AIEVMIHSKALLLLSCD------FATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS------EQAWSHRRWVINM  179 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe------~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs------y~~W~hRrwll~~  179 (425)
                      .++++.....+|.+.++      ...+++....+... +   .+++++.....++...|+.      ..+++....++..
T Consensus        92 ~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g---~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~  167 (307)
T 2ifu_A           92 MPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-L---DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR  167 (307)
T ss_dssp             GGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-T---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence            35677777777777432      23566666666655 4   7899999999999877654      3556666666655


Q ss_pred             HhhccchhHHhHHHHHHHHHHHHHhcCCchh------hhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHH
Q 045108          180 ISRNCSTLQWIIERESELVEKIAERSKMNYR------AWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHY  250 (425)
Q Consensus       180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~------AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~y  250 (425)
                      ++.        +.+.+..+.++++..|++-.      ++.....+...++  .+...+..+++.+ .+|........
T Consensus       168 ~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al-~~p~~~~~~e~  233 (307)
T 2ifu_A          168 QQK--------FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRA--DYVAAQKCVRESY-SIPGFSGSEDC  233 (307)
T ss_dssp             TTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHT-TSTTSTTSHHH
T ss_pred             cCC--------HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHh-CCCCCCCCHHH
Confidence            544        68899999999998876643      3333333333333  3788899999999 99987655443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=88.44  E-value=5.8  Score=36.55  Aligned_cols=115  Identities=17%  Similarity=-0.012  Sum_probs=80.9

Q ss_pred             chHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHccCCcccHHHHHHHHHHHH---hhCCCch----hhhhHHHHHH
Q 045108          111 VAIEVMIHSKALLLLSCDF------ATAWNSRKLIVSNKQLLPILMDELRLSAVVL---SHSPKSE----QAWSHRRWVI  177 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~------~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL---~~~PKsy----~~W~hRrwll  177 (425)
                      ..++++.....+|.+.+..      ..+++..+.+....   ..+++++.....++   ...|...    .+++....+.
T Consensus       130 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~---~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y  206 (293)
T 2qfc_A          130 DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAEN---GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL  206 (293)
T ss_dssp             CHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHH
Confidence            3467888888888765544      56888888888776   47899999999998   5666643    5777777777


Q ss_pred             HHHhhccchhHHhHHHHHHHHHHHHHhcCCc------hhhhhHHHHHHHhhchhhHHHH-HHHHHHHH
Q 045108          178 NMISRNCSTLQWIIERESELVEKIAERSKMN------YRAWNHRCWLVSFMTREQVLNE-LKQSRNWS  238 (425)
Q Consensus       178 ~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN------Y~AW~hR~wll~~~~~~~~~~E-L~~~~~~i  238 (425)
                      ..++.        +++.+.++.++++..++.      ..++...+.+...++.  .++. ..+.++.+
T Consensus       207 ~~~~~--------y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~--~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          207 YLDSR--------YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY--EEAEIEDAYKKAS  264 (293)
T ss_dssp             HHTTC--------HHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHH
T ss_pred             HHHhh--------HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHH
Confidence            76654        688888888888876431      4566667777766654  3444 44455544

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=88.27  E-value=10  Score=36.15  Aligned_cols=153  Identities=5%  Similarity=-0.193  Sum_probs=101.1

Q ss_pred             hHHHHHHHHHHHHhC------CccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCch-------hhhhHHHHHHH
Q 045108          112 AIEVMIHSKALLLLS------CDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE-------QAWSHRRWVIN  178 (425)
Q Consensus       112 ~~~~L~~t~~lLl~n------pe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy-------~~W~hRrwll~  178 (425)
                      .++++.....++.+.      |....+++..+.+....   ..+..++.....++...++..       .+++....+..
T Consensus       117 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~  193 (378)
T 3q15_A          117 YVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHM---KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD  193 (378)
T ss_dssp             HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHc---CCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence            467888888887663      33455666677777666   478999999999998765533       23334444444


Q ss_pred             HHhhccchhHHhHHHHHHHHHHHHHhcCC------chhhhhHHHHHHHhhchhhHHHHHHHHHHHHh-----hcCCChhH
Q 045108          179 MISRNCSTLQWIIERESELVEKIAERSKM------NYRAWNHRCWLVSFMTREQVLNELKQSRNWSG-----LHVADNSC  247 (425)
Q Consensus       179 ~l~~~~~~~~~~~~~EL~~~~~~l~~~pk------NY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~-----~d~~N~Sa  247 (425)
                      .++.        +++.+....++++..++      ...++...+++....+.  ++..+.+..+.+.     .+|....+
T Consensus       194 ~~~~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~  263 (378)
T 3q15_A          194 DFKH--------YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD--DQMAVEHFQKAAKVSREKVPDLLPKV  263 (378)
T ss_dssp             HTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HhCC--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHhhCChhHHHH
Confidence            4332        57777777777775432      12355666777766654  6788888888888     77777666


Q ss_pred             HHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCC
Q 045108          248 FHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVG  297 (425)
Q Consensus       248 W~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~  297 (425)
                      +.....+.... +                   -+++.+.+..+.+...+.
T Consensus       264 ~~~la~~~~~~-g-------------------~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          264 LFGLSWTLCKA-G-------------------QTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHHHHT-T-------------------CHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHC-C-------------------CHHHHHHHHHHHHHHHHH
Confidence            66666665543 1                   156777888888887654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=86.67  E-value=3.4  Score=38.12  Aligned_cols=116  Identities=16%  Similarity=-0.032  Sum_probs=82.8

Q ss_pred             hHHHHHHHHHHHHhCCccH------HHHHHHHHHHHccCCcccHHHHHHHHHHHHhh-------CCCchhhhhHHHHHHH
Q 045108          112 AIEVMIHSKALLLLSCDFA------TAWNSRKLIVSNKQLLPILMDELRLSAVVLSH-------SPKSEQAWSHRRWVIN  178 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~------TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~-------~PKsy~~W~hRrwll~  178 (425)
                      .++++.....+|.+.+...      .+++.-+.+....   ..+++++.....+|..       .+....+++....+..
T Consensus       131 ~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~  207 (293)
T 3u3w_A          131 YEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAEN---GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY  207 (293)
T ss_dssp             HHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence            4778889999998654432      3677777777666   4789999999999852       2223356777777776


Q ss_pred             HHhhccchhHHhHHHHHHHHHHHHHhcCCc------hhhhhHHHHHHHhhchhhHHHHHHHHHHHHh
Q 045108          179 MISRNCSTLQWIIERESELVEKIAERSKMN------YRAWNHRCWLVSFMTREQVLNELKQSRNWSG  239 (425)
Q Consensus       179 ~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN------Y~AW~hR~wll~~~~~~~~~~EL~~~~~~i~  239 (425)
                      .++.        +++.+.++.++++..+++      -.++...+.+...++.. .++.++++.+.+.
T Consensus       208 ~~~~--------y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-~~~A~~~~~~Al~  265 (293)
T 3u3w_A          208 LDSR--------YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYE-EAEIEDAYKKASF  265 (293)
T ss_dssp             HTTC--------HHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHH
T ss_pred             HHhH--------HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHH
Confidence            6654        688889999999877655      46788888888877631 4567777777665

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=86.10  E-value=14  Score=30.90  Aligned_cols=104  Identities=5%  Similarity=-0.147  Sum_probs=69.6

Q ss_pred             hCC-ccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHh------hCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHH
Q 045108          125 LSC-DFATAWNSRKLIVSNKQLLPILMDELRLSAVVLS------HSPKSEQAWSHRRWVINMISRNCSTLQWIIERESEL  197 (425)
Q Consensus       125 ~np-e~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~------~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~  197 (425)
                      -+| ....+++....+....   ..+.+.+..+..++.      ..|....++.....+....+.        +++.+..
T Consensus        20 ~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~   88 (203)
T 3gw4_A           20 AHPATASGARFMLGYVYAFM---DRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN--------WDAARRC   88 (203)
T ss_dssp             TSTTTHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC--------HHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHh---CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC--------HHHHHHH
Confidence            355 6677888888877766   478999999999888      444455666666666665544        5677777


Q ss_pred             HHHHHHh---cC----CchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhc
Q 045108          198 VEKIAER---SK----MNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLH  241 (425)
Q Consensus       198 ~~~~l~~---~p----kNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d  241 (425)
                      +.++++.   .+    ..-.++.....+....+.  +++.+..+.+.+...
T Consensus        89 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~  137 (203)
T 3gw4_A           89 FLEERELLASLPEDPLAASANAYEVATVALHFGD--LAGARQEYEKSLVYA  137 (203)
T ss_dssp             HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHH
Confidence            7777776   33    223455666666666554  667777777777543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=84.45  E-value=8  Score=30.49  Aligned_cols=116  Identities=9%  Similarity=-0.039  Sum_probs=67.5

Q ss_pred             hHHHHHHHHHHHHhCCccH------HHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc------hhhhhHHHHHHHH
Q 045108          112 AIEVMIHSKALLLLSCDFA------TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS------EQAWSHRRWVINM  179 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~------TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs------y~~W~hRrwll~~  179 (425)
                      .++++.....++.+.++..      .+++....+....   ..+.+.+.+...++...++.      ..++.....+...
T Consensus        25 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  101 (164)
T 3ro3_A           25 FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFL---GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL  101 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            3566666766666655433      3666666666666   47899999999988865543      3445555555544


Q ss_pred             HhhccchhHHhHHHHHHHHHHHHHhcCCc------hhhhhHHHHHHHhhchhhHHHHHHHHHHHHhh
Q 045108          180 ISRNCSTLQWIIERESELVEKIAERSKMN------YRAWNHRCWLVSFMTREQVLNELKQSRNWSGL  240 (425)
Q Consensus       180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkN------Y~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~  240 (425)
                      .+.        +++.+..+.++++..++.      ..++.....+....+  .+.+.++++.+.+..
T Consensus       102 ~~~--------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A          102 LQD--------YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG--NHDQAMHFAEKHLEI  158 (164)
T ss_dssp             TTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH
T ss_pred             Hhh--------HHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHH
Confidence            433        566777777777654332      122333333333333  255666666666554

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=81.83  E-value=10  Score=36.02  Aligned_cols=118  Identities=5%  Similarity=-0.125  Sum_probs=93.6

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc--hhhhhHHHHHHHHHhhccchhHH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS--EQAWSHRRWVINMISRNCSTLQW  189 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs--y~~W~hRrwll~~l~~~~~~~~~  189 (425)
                      .+++.+....++..+|++. +...|..+....   ..+.+.+..++.+....+..  ..++.+...++..++.       
T Consensus       118 y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~---~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~-------  186 (282)
T 4f3v_A          118 YADAMEALEAAPVAGSEHL-VAWMKAVVYGAA---ERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL-------  186 (282)
T ss_dssp             HHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHT---TCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTC-------
T ss_pred             HHHHHHHHHHHHhcCCchH-HHHHHHHHHHHc---CCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCC-------
Confidence            3677888888888899888 888888777766   47899999988776543222  2478888888888775       


Q ss_pred             hHHHHHHHHHHHHHhc--CC-chhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCC
Q 045108          190 IIERESELVEKIAERS--KM-NYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVA  243 (425)
Q Consensus       190 ~~~~EL~~~~~~l~~~--pk-NY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~  243 (425)
                       +.+.+....+++...  |. .-.++.++..++..++.  .++......+++..+|.
T Consensus       187 -~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr--~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          187 -FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN--ESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             -HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHSCC
T ss_pred             -HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCc
Confidence             688999999998654  66 44699999999999987  57889999999999997

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=80.46  E-value=19  Score=28.18  Aligned_cols=98  Identities=9%  Similarity=-0.053  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCch------hhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHh
Q 045108          131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE------QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAER  204 (425)
Q Consensus       131 TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy------~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~  204 (425)
                      .+++....+....   ..+.+.+.....++...++..      .++.....+....+.        +.+.+.++.++++.
T Consensus        10 ~~~~~l~~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~a~~~   78 (164)
T 3ro3_A           10 RAFGNLGNTHYLL---GNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE--------FETASEYYKKTLLL   78 (164)
T ss_dssp             HHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHH
Confidence            3455556555555   468889999988888765543      245555555544433        57777888888777


Q ss_pred             cCCc------hhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhc
Q 045108          205 SKMN------YRAWNHRCWLVSFMTREQVLNELKQSRNWSGLH  241 (425)
Q Consensus       205 ~pkN------Y~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d  241 (425)
                      .++.      ..++.....+....+.  +++.+..+.+.+...
T Consensus        79 ~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~  119 (164)
T 3ro3_A           79 ARQLKDRAVEAQSCYSLGNTYTLLQD--YEKAIDYHLKHLAIA  119 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHH
T ss_pred             HHHhCCcHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHH
Confidence            6553      4455566666655554  667777777777653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	425
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	3e-11

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.9 bits (149), Expect = 3e-11
 Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 20/230 (8%)

Query: 114 EVMIHSKALLLLSCDFATAWNSRKLIV-------SNKQLLPILMDELRLSAVVLSHSPKS 166
            V+  +  +L  + DFAT WN R+ ++       S ++   ++  EL      L  +PKS
Sbjct: 47  SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS 106

Query: 167 EQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ 226
              W HR W+++ +            RE EL  +  E  + N+  W++R ++ +      
Sbjct: 107 YGTWHHRCWLLSRLPEPN------WARELELCARFLEADERNFHCWDYRRFVAAQAAVAP 160

Query: 227 VLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELD 286
              EL  + +    + ++ S +HY   L+             +S         V  +EL+
Sbjct: 161 -AEELAFTDSLITRNFSNYSSWHYRSCLL------PQLHPQPDSGPQGRLPENVLLKELE 213

Query: 287 WNESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDID 336
             ++        ++ W + R+L           L                
Sbjct: 214 LVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCK 263

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	425
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	100.0
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.9
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.87
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.65
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.82
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.77
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.75
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.66
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.65
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.46
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.3
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.28
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.2
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.2
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.99
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.98
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.86
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.85
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.84
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.77
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.69
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.68
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.61
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.6
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.55
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.49
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.34
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.34
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.31
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.29
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.24
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.23
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.23
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.07
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.89
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.81
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	96.48
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	95.26
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	93.85
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	93.46
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	93.32
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	92.45
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	91.07
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	90.72
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	88.65
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	87.09
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	86.94
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	86.06
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	84.34

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-33  Score=270.12  Aligned_cols=271  Identities=18%  Similarity=0.261  Sum_probs=209.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHH
Q 045108           76 QILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRL  155 (425)
Q Consensus        76 ~~l~~ly~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~  155 (425)
                      ..+.+-|..|...+...+.             .++.+++++++++.+|.+||+|++||++|+.++..++  .++++|+.+
T Consensus        36 I~~~p~~~~a~~~~~~~~~-------------~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~--~~~~eal~~  100 (315)
T d2h6fa1          36 IIYSDKFRDVYDYFRAVLQ-------------RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ--KDLHEEMNY  100 (315)
T ss_dssp             ECCCHHHHHHHHHHHHHHH-------------HTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CCHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHHH-------------hCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhC--cCHHHHHHH
Confidence            3446889999888877665             2467899999999999999999999999999999875  579999999


Q ss_pred             HHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHH
Q 045108          156 SAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSR  235 (425)
Q Consensus       156 ~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~  235 (425)
                      +..++..+||++++|+||++++..++.        ++++++++.++++.+|+|+++|.||+|++..++.  ++++++.++
T Consensus       101 ~~~al~~~p~~~~a~~~~~~~~~~l~~--------~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~--~~~Al~~~~  170 (315)
T d2h6fa1         101 ITAIIEEQPKNYQVWHHRRVLVEWLRD--------PSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL--WDNELQYVD  170 (315)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHTC--------CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--CTTHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHhHHHHhhcc--------HHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHh--hHHHHHHHH
Confidence            999999999999999999999999876        4789999999999999999999999999999886  689999999


Q ss_pred             HHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q 045108          236 NWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLYLIKH  315 (425)
Q Consensus       236 ~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~~~~~  315 (425)
                      ++|+.||+|++||++|.+++.++...              .....+++++++..++|..+|+|.++|+|++.++...   
T Consensus       171 ~al~~~p~n~~a~~~r~~~l~~~~~~--------------~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~---  233 (315)
T d2h6fa1         171 QLLKEDVRNNSVWNQRYFVISNTTGY--------------NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR---  233 (315)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCS--------------CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT---
T ss_pred             HHHHHCCccHHHHHHHHHHHHHcccc--------------chhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc---
Confidence            99999999999999999999875321              1134688999999999999999999999998876420   


Q ss_pred             HhhhccCcCCCCCCCCCchhhHHHHHHHHHHHHHhhhccCCCCcchhHHHhHHHHHHHHHHHhhhhcccc--cchhhhhh
Q 045108          316 IATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQIPEYQ--GINIQEKL  393 (425)
Q Consensus       316 ~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv~~~~~~~p~d~~~~~~~qs~~~~~y~~WL~~~~~~~~--~~~~~~~~  393 (425)
                                       ...       +..+.+..++...|+....+          ...++.+.+.+..  ..+.....
T Consensus       234 -----------------~~~-------~~~~~~~~~~~l~~~~~~~~----------~~~~l~~~y~~~~~~~~~~~~~~  279 (315)
T d2h6fa1         234 -----------------GLS-------KYPNLLNQLLDLQPSHSSPY----------LIAFLVDIYEDMLENQCDNKEDI  279 (315)
T ss_dssp             -----------------CGG-------GCHHHHHHHHHHTTTCCCHH----------HHHHHHHHHHHHHHTTCSSHHHH
T ss_pred             -----------------ChH-------HHHHHHHHHHHhCCCcCCHH----------HHHHHHHHHHHHHhcCHHHHHHH
Confidence                             001       11122334444566554322          2233333222110  00001111


Q ss_pred             hcchhhHHHHHh-hhCCCccchhhhhhccC
Q 045108          394 QAGAGDLMRMLK-RSCPDRSSLWDYLVGYH  422 (425)
Q Consensus       394 ~~~~~~~~~~l~-~~~p~r~~~w~~~~~~~  422 (425)
                      ...+..+...++ ++||+|.+||.|+.+.+
T Consensus       280 ~~ka~~l~~~l~~~~DpiR~~yw~~~~~~l  309 (315)
T d2h6fa1         280 LNKALELCEILAKEKDTIRKEYWRYIGRSL  309 (315)
T ss_dssp             HHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            123556666665 99999999999998765

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=7.9e-22  Score=191.06  Aligned_cols=284  Identities=18%  Similarity=0.227  Sum_probs=203.6

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCC-------cccHHH
Q 045108           79 IPVYKAAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQL-------LPILMD  151 (425)
Q Consensus        79 ~~ly~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~-------~~~l~~  151 (425)
                      .+.|..+...+.....             .++.++++++.+.++|.+||+++++||+|+.++..+..       ...+.+
T Consensus        25 ~~~~~~~~~~~~~~~~-------------~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~   91 (334)
T d1dcea1          25 LKLYQSATQAVFQKRQ-------------AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKA   91 (334)
T ss_dssp             HHHHHHHHHHHHHHHH-------------TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh-------------cccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence            3466666665555433             34677999999999999999999999999999887641       223789


Q ss_pred             HHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHH
Q 045108          152 ELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNEL  231 (425)
Q Consensus       152 EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL  231 (425)
                      ++.+++.++..+||++++|.||+|++..+...      .+.+++..+.++++.+|+|+++|.++.|....... ..+.++
T Consensus        92 al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~------~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~Al  164 (334)
T d1dcea1          92 ELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP------NWARELELCARFLEADERNFHCWDYRRFVAAQAAV-APAEEL  164 (334)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC-CHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHhhHHHHHhccc------cHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhcc-ccHHHH
Confidence            99999999999999999999999999987652      36899999999999999999999999887766543 378999


Q ss_pred             HHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q 045108          232 KQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLY  311 (425)
Q Consensus       232 ~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~  311 (425)
                      +++++++..||+|+++|++|..++..+....      ...........+....+++...++..++.++++|.|.+.+...
T Consensus       165 ~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~------~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~  238 (334)
T d1dcea1         165 AFTDSLITRNFSNYSSWHYRSCLLPQLHPQP------DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR  238 (334)
T ss_dssp             HHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC------CSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHhcCHH------HHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC
Confidence            9999999999999999999999998863211      0001112234567778888899999999999999999876531


Q ss_pred             HHHHHhhhccCcCCCCCCCCCchhhHHHH---HHHHHHHHHhhhccCCCCcchhHHHhHHHHHHHHHHHhhhhcccccch
Q 045108          312 LIKHIATHLLGVSCQSKPKASVDIDIDSL---MDHELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQIPEYQGIN  388 (425)
Q Consensus       312 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~---l~~E~~lv~~~~~~~p~d~~~~~~~qs~~~~~y~~WL~~~~~~~~~~~  388 (425)
                           + +...      .. ...+.....   ..+-++.+..++..+|++         ..++.++-++....    |  
T Consensus       239 -----~-~~~~------~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~----~--  290 (334)
T d1dcea1         239 -----A-EPLF------RC-ELSVEKSTVLQSELESCKELQELEPENKWC---------LLTIILLMRALDPL----L--  290 (334)
T ss_dssp             -----C-CCSS------SC-CCCHHHHHHHHHHHHHHHHHHHHCTTCHHH---------HHHHHHHHHHHCTG----G--
T ss_pred             -----c-chhh------HH-HHHHHHHHHHhhHHHHHHHHHHHHhhCchH---------HHHHHHHHHHHHHC----C--
Confidence                 0 0000      00 011111122   223344555566565532         12455554444321    2  


Q ss_pred             hhhhhhcchhhHHHHHhhhCCCccchhhhhhc
Q 045108          389 IQEKLQAGAGDLMRMLKRSCPDRSSLWDYLVG  420 (425)
Q Consensus       389 ~~~~~~~~~~~~~~~l~~~~p~r~~~w~~~~~  420 (425)
                        . . .++.....-+...||.|.+||.++..
T Consensus       291 --~-~-~eA~~~~~~ai~ldP~~~~y~~~L~~  318 (334)
T d1dcea1         291 --Y-E-KETLQYFSTLKAVDPMRAAYLDDLRS  318 (334)
T ss_dssp             --G-H-HHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             --C-H-HHHHHHHHHHHHHCcccHHHHHHHHH
Confidence              1 1 24666777777899999999998754

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=8.8e-22  Score=191.48  Aligned_cols=197  Identities=15%  Similarity=0.311  Sum_probs=170.9

Q ss_pred             HHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHH
Q 045108          123 LLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIA  202 (425)
Q Consensus       123 Ll~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l  202 (425)
                      |.++|++..|+++.+.++.+.+   .+++++..++.++..||+++++|++|+-++..++.       .+++|+.++.+++
T Consensus        36 I~~~p~~~~a~~~~~~~~~~~e---~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~-------~~~eal~~~~~al  105 (315)
T d2h6fa1          36 IIYSDKFRDVYDYFRAVLQRDE---RSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK-------DLHEEMNYITAII  105 (315)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTC---CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHHHhCC---chHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCc-------CHHHHHHHHHHHH
Confidence            5678999999999999998874   67999999999999999999999999999998764       3689999999999


Q ss_pred             HhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHH
Q 045108          203 ERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWK  282 (425)
Q Consensus       203 ~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~  282 (425)
                      +.+|+|+.+|.||++++..++.  +.++++.+++.++.||+|+++|.+|.+++..+.                    .++
T Consensus       106 ~~~p~~~~a~~~~~~~~~~l~~--~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~--------------------~~~  163 (315)
T d2h6fa1         106 EEQPKNYQVWHHRRVLVEWLRD--PSQELEFIADILNQDAKNYHAWQHRQWVIQEFK--------------------LWD  163 (315)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTC--CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--------------------CCT
T ss_pred             HHHHhhhhHHHHHhHHHHhhcc--HHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHH--------------------hhH
Confidence            9999999999999999999886  678999999999999999999999999998762                    146


Q ss_pred             HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHHHhhhccCCCCcchh
Q 045108          283 EELDWNESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANFED  362 (425)
Q Consensus       283 ~EL~~~~~~I~~~p~neSaW~yrr~Ll~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv~~~~~~~p~d~~~~  362 (425)
                      ++++++.++|..+|+|.++|++|..++..+..                   . .....+.++++....++..+|++.+  
T Consensus       164 ~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~-------------------~-~~~~~~~~ai~~~~~al~~~P~~~~--  221 (315)
T d2h6fa1         164 NELQYVDQLLKEDVRNNSVWNQRYFVISNTTG-------------------Y-NDRAVLEREVQYTLEMIKLVPHNES--  221 (315)
T ss_dssp             THHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------------S-CSHHHHHHHHHHHHHHHHHSTTCHH--
T ss_pred             HHHHHHHHHHHHCCccHHHHHHHHHHHHHccc-------------------c-chhhhhHHhHHHHHHHHHhCCCchH--
Confidence            78999999999999999999999888764211                   0 0124467899999999999998843  


Q ss_pred             HHHhHHHHHHHHHHHhhh
Q 045108          363 FQAQAIHSAAYMLWLTKQ  380 (425)
Q Consensus       363 ~~~qs~~~~~y~~WL~~~  380 (425)
                             +|.|+.++...
T Consensus       222 -------~~~~l~~ll~~  232 (315)
T d2h6fa1         222 -------AWNYLKGILQD  232 (315)
T ss_dssp             -------HHHHHHHHHTT
T ss_pred             -------HHHHHHHHHHh
Confidence                   68899998754

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=4.2e-15  Score=143.05  Aligned_cols=191  Identities=23%  Similarity=0.341  Sum_probs=153.7

Q ss_pred             HHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccch--hHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhh
Q 045108          149 LMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCST--LQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ  226 (425)
Q Consensus       149 l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~--~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~  226 (425)
                      .++.+.+++.+|..||+++++|++|+.++..+......  ....+.+++.++.++++.+|+|+.+|.||+|++..++...
T Consensus        45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~  124 (334)
T d1dcea1          45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN  124 (334)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred             cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcccc
Confidence            47899999999999999999999999999988764331  2345789999999999999999999999999999988766


Q ss_pred             HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 045108          227 VLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRR  306 (425)
Q Consensus       227 ~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr  306 (425)
                      +.+++..+.+.+..||++.++|.++.+.+....+                   .+++++.+..++|..+|+|.++|+++.
T Consensus       125 ~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~Al~~~~~~i~~~p~~~~a~~~l~  185 (334)
T d1dcea1         125 WARELELCARFLEADERNFHCWDYRRFVAAQAAV-------------------APAEELAFTDSLITRNFSNYSSWHYRS  185 (334)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC-------------------CHHHHHHHHHTTTTTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhcc-------------------ccHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            8899999999999999999999998877655322                   267889999999999999999999998


Q ss_pred             HHHHHHHHHHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHHHhhhccCCCCcchhHHHhHHHHHHHHHHHhh
Q 045108          307 FLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTK  379 (425)
Q Consensus       307 ~Ll~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv~~~~~~~p~d~~~~~~~qs~~~~~y~~WL~~  379 (425)
                      .++..+.+.     ..       ...............++.+..++..+|.++.         .|.|...+..
T Consensus       186 ~~~~~~~~~-----~~-------A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a---------~~~~~~~l~~  237 (334)
T d1dcea1         186 CLLPQLHPQ-----PD-------SGPQGRLPENVLLKELELVQNAFFTDPNDQS---------AWFYHRWLLG  237 (334)
T ss_dssp             HHHHHHSCC-----CC-------SSSCCSSCHHHHHHHHHHHHHHHHHCSSCSH---------HHHHHHHHHS
T ss_pred             HHHHHhcCH-----HH-------HHHHHHHhHHhHHHHHHHHHHHHHhcchhHH---------HHHHHHHHHh
Confidence            887653211     11       1112223445567788889999999998754         5667777663

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.2e-07  Score=88.50  Aligned_cols=169  Identities=7%  Similarity=-0.024  Sum_probs=105.2

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccC-------------------------------CcccHHHHHHHHHHHH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQ-------------------------------LLPILMDELRLSAVVL  160 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~-------------------------------~~~~l~~EL~~~~~lL  160 (425)
                      .++++.....++.++|++..+|.....++...+                               ....+++++..+..++
T Consensus       185 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  264 (388)
T d1w3ba_         185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI  264 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            355666666666666666666666655554432                               0124555566666666


Q ss_pred             hhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhh
Q 045108          161 SHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGL  240 (425)
Q Consensus       161 ~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~  240 (425)
                      ..+|+++.+|.....++...+.        +.+.+..+..+....|.+..+|..+..+....+.  +++.++..++.++.
T Consensus       265 ~~~p~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~  334 (388)
T d1w3ba_         265 ELQPHFPDAYCNLANALKEKGS--------VAEAEDCYNTALRLCPTHADSLNNLANIKREQGN--IEEAVRLYRKALEV  334 (388)
T ss_dssp             HTCSSCHHHHHHHHHHHHHHSC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--HHHHHHHHHHHTTS
T ss_pred             HhCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHhhhccCCccchhhhHHHHHHHHCCC--HHHHHHHHHHHHHh
Confidence            6666666666655555554433        3555566666666666666666666666555443  56677777777777


Q ss_pred             cCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 045108          241 HVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSL  310 (425)
Q Consensus       241 d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~  310 (425)
                      +|.+..+|..+..++... +                   -+++.+.+..++|+.+|++..+|..+..++.
T Consensus       335 ~p~~~~~~~~la~~~~~~-g-------------------~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~  384 (388)
T d1w3ba_         335 FPEFAAAHSNLASVLQQQ-G-------------------KLQEALMHYKEAIRISPTFADAYSNMGNTLK  384 (388)
T ss_dssp             CTTCHHHHHHHHHHHHTT-T-------------------CCHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHc-C-------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            777777777766665542 1                   1456677778888888988888887655543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=3.9e-07  Score=84.75  Aligned_cols=175  Identities=7%  Similarity=-0.065  Sum_probs=133.1

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccc------
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCS------  185 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~------  185 (425)
                      .++++.....+|..||++..+|..++.+....+   .+++++..+..++..+|++..+|.....++...+....      
T Consensus        35 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  111 (323)
T d1fcha_          35 LPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE---QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR  111 (323)
T ss_dssp             HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHhhhccccccccccccccccccccccccccccchh
Confidence            477888888888999999999988888887773   78888888888888889888888887777655432110      


Q ss_pred             -------h----------------------------hHHhHHHHHHHHHHHHHhcCCchhh--hhHHHHHHHhhchhhHH
Q 045108          186 -------T----------------------------LQWIIERESELVEKIAERSKMNYRA--WNHRCWLVSFMTREQVL  228 (425)
Q Consensus       186 -------~----------------------------~~~~~~~EL~~~~~~l~~~pkNY~A--W~hR~wll~~~~~~~~~  228 (425)
                             +                            ....+.+....+.++++.+|.+..+  |...+.+....+.  ++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~--~~  189 (323)
T d1fcha_         112 DWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE--YD  189 (323)
T ss_dssp             HHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTC--HH
T ss_pred             hHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH--Hh
Confidence                   0                            0123455566778889999887654  5555666665554  78


Q ss_pred             HHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 045108          229 NELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFL  308 (425)
Q Consensus       229 ~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~L  308 (425)
                      +.+..+++.+..+|.+..+|..+..++... +                   .+++.+++..++|..+|++..+|..+..+
T Consensus       190 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g-------------------~~~~A~~~~~~al~~~p~~~~a~~~lg~~  249 (323)
T d1fcha_         190 KAVDCFTAALSVRPNDYLLWNKLGATLANG-N-------------------QSEEAVAAYRRALELQPGYIRSRYNLGIS  249 (323)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-T-------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhcccccccccccccccchhhhhhccccc-c-------------------cchhHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            889999999999999999999998887663 1                   26777888999999999999999887555


Q ss_pred             HHH
Q 045108          309 SLY  311 (425)
Q Consensus       309 l~~  311 (425)
                      ...
T Consensus       250 ~~~  252 (323)
T d1fcha_         250 CIN  252 (323)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=3.5e-07  Score=85.17  Aligned_cols=175  Identities=9%  Similarity=-0.041  Sum_probs=127.0

Q ss_pred             cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccch---
Q 045108          110 TVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCST---  186 (425)
Q Consensus       110 ~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~---  186 (425)
                      .............+..+|++..++..+..+....   ..+.+++..+..++..+|++..+|.....++...+.....   
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~  225 (388)
T d1w3ba_         149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ---GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA  225 (388)
T ss_dssp             SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred             chhhhhHHHHHHhhccCcchhHHHHhhccccccc---CcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHH
Confidence            3456777888999999999999999998888777   4789999999999999999999999888776654332100   


Q ss_pred             -----------------------hHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCC
Q 045108          187 -----------------------LQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVA  243 (425)
Q Consensus       187 -----------------------~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~  243 (425)
                                             -...+++.+.++.++++.+|.+..+|.....++...+.  +.+.++.....+..+|.
T Consensus       226 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~  303 (388)
T d1w3ba_         226 YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS--VAEAEDCYNTALRLCPT  303 (388)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHCTT
T ss_pred             HHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHhhhccCCc
Confidence                                   01234556667777777777777777777666666554  55666777777777777


Q ss_pred             ChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 045108          244 DNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLS  309 (425)
Q Consensus       244 N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll  309 (425)
                      +..+|..+..+....                    ..+++.+.+..++|+.+|++..+|..+-.+.
T Consensus       304 ~~~~~~~l~~~~~~~--------------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  349 (388)
T d1w3ba_         304 HADSLNNLANIKREQ--------------------GNIEEAVRLYRKALEVFPEFAAAHSNLASVL  349 (388)
T ss_dssp             CHHHHHHHHHHHHTT--------------------TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHHC--------------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            777776666554432                    1256778888999999999988887754443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=2.1e-06  Score=79.61  Aligned_cols=191  Identities=10%  Similarity=-0.017  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCCC----CCCCCCCccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHH
Q 045108           81 VYKAAKHAFISALRQYKTPGN----FSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLS  156 (425)
Q Consensus        81 ly~~A~~~f~~~l~~y~~~~~----~~~~~~~~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~  156 (425)
                      -|..|...|.++++.......    ....-......++++.....++.++|++..+|.....++...+   .+.+++..+
T Consensus        34 ~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~  110 (323)
T d1fcha_          34 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES---LQRQACEIL  110 (323)
T ss_dssp             CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc---cccccccch
Confidence            467787888777763211000    0000001234578999999999999999999999988887663   556666666


Q ss_pred             HHHHhhCCCchhhhhH---------------------------------------------------HHHHHHHHhhccc
Q 045108          157 AVVLSHSPKSEQAWSH---------------------------------------------------RRWVINMISRNCS  185 (425)
Q Consensus       157 ~~lL~~~PKsy~~W~h---------------------------------------------------Rrwll~~l~~~~~  185 (425)
                      ..++..+|+...++..                                                   ...+....     
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~-----  185 (323)
T d1fcha_         111 RDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS-----  185 (323)
T ss_dssp             HHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT-----
T ss_pred             hhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH-----
Confidence            6666666665544322                                                   12222111     


Q ss_pred             hhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhcccccc
Q 045108          186 TLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHI  265 (425)
Q Consensus       186 ~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~  265 (425)
                         ..+++.+..+.+++..+|.+..+|..++.+....+.  +.+.++.+.+.++.+|.+..+|..+..+...+ +     
T Consensus       186 ---~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g-----  254 (323)
T d1fcha_         186 ---GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ--SEEAVAAYRRALELQPGYIRSRYNLGISCINL-G-----  254 (323)
T ss_dssp             ---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-T-----
T ss_pred             ---HHHhhhhcccccccccccccccchhhhhhccccccc--chhHHHHHHHHHHHhhccHHHHHHHHHHHHHC-C-----
Confidence               236788999999999999999999999999988776  78899999999999999999999999888774 2     


Q ss_pred             CCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHH
Q 045108          266 QDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLH  304 (425)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~y  304 (425)
                                    -+++.+++..++|+.+|.+..++..
T Consensus       255 --------------~~~~A~~~~~~al~l~p~~~~~~~~  279 (323)
T d1fcha_         255 --------------AHREAVEHFLEALNMQRKSRGPRGE  279 (323)
T ss_dssp             --------------CHHHHHHHHHHHHHHHHTC------
T ss_pred             --------------CHHHHHHHHHHHHHhCCcChhhhhh
Confidence                          1677888889999999998775543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=7.8e-07  Score=79.91  Aligned_cols=101  Identities=9%  Similarity=-0.056  Sum_probs=88.9

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++++.....+|.++|++..+|+.++.+....+   .+++++..+..++..+|++..+|..+..++..++.        +
T Consensus        53 ~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--------~  121 (259)
T d1xnfa_          53 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAG---NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR--------D  121 (259)
T ss_dssp             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHHHHhhccCCCCHHHHhhhchHHHHHH---HHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhh--------H
Confidence            478999999999999999999999999998884   89999999999999999999999999999887765        5


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhc
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMT  223 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~  223 (425)
                      ...+..+.++++.+|.+..+..+.......+.
T Consensus       122 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  153 (259)
T d1xnfa_         122 KLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLD  153 (259)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhccccHHHHHHHHHHHHHhh
Confidence            78899999999999999887776665554444

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2.9e-06  Score=68.57  Aligned_cols=98  Identities=9%  Similarity=0.038  Sum_probs=86.8

Q ss_pred             ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhh
Q 045108          147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ  226 (425)
Q Consensus       147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~  226 (425)
                      +.+++++.+++.+|..+|.++.+|..+..+...++.        +++.+..+.++++.+|.|..+|..++-+...++.  
T Consensus        17 g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~--   86 (117)
T d1elwa_          17 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD--------YQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR--   86 (117)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--
T ss_pred             CCHHHHHHHHHHHHhcCCcchhhhhccccccccccc--------ccccchhhhhHHHhccchhhHHHHHHHHHHHccC--
Confidence            478999999999999999999999999999988765        6889999999999999999999999999888876  


Q ss_pred             HHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 045108          227 VLNELKQSRNWSGLHVADNSCFHYHRRL  254 (425)
Q Consensus       227 ~~~EL~~~~~~i~~d~~N~SaW~yR~~l  254 (425)
                      +++.+..+.+.++.+|.|..++..+.-+
T Consensus        87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          87 FEEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            7899999999999999998888776543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=8.8e-06  Score=68.72  Aligned_cols=99  Identities=9%  Similarity=-0.051  Sum_probs=86.3

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++++.....+|.+||++..+|+.++.++..++   .+++++..+..+|..+|++..+|..+..++..++.        +
T Consensus        26 y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~--------~   94 (159)
T d1a17a_          26 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE---CYGYALGDATRAIELDKKYIKGYYRRAASNMALGK--------F   94 (159)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHhhhccccchhhhhhhhhhHHHHHhcc---ccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC--------H
Confidence            477999999999999999999999999998884   78999999999999999999999999998888765        6


Q ss_pred             HHHHHHHHHHHHhcCCchhhhhHHHHHHHh
Q 045108          192 ERESELVEKIAERSKMNYRAWNHRCWLVSF  221 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~  221 (425)
                      .+.+..+.++++.+|.|..++.+...+...
T Consensus        95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~  124 (159)
T d1a17a_          95 RAALRDYETVVKVKPHDKDAKMKYQECNKI  124 (159)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            888899999999999999888776555443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1e-05  Score=65.16  Aligned_cols=95  Identities=9%  Similarity=0.047  Sum_probs=87.1

Q ss_pred             chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108          111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~  190 (425)
                      ..++++.....+|.++|++..+|+.+..+....+   .+++++..+..++..+|.+..+|..+.-++..++.        
T Consensus        18 ~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~--------   86 (117)
T d1elwa_          18 NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKG---DYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR--------   86 (117)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------
T ss_pred             CHHHHHHHHHHHHhcCCcchhhhhcccccccccc---cccccchhhhhHHHhccchhhHHHHHHHHHHHccC--------
Confidence            3578999999999999999999999999999884   88999999999999999999999999999888875        


Q ss_pred             HHHHHHHHHHHHHhcCCchhhhhHHH
Q 045108          191 IERESELVEKIAERSKMNYRAWNHRC  216 (425)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR~  216 (425)
                      +++.+.++.++++.+|.|-.++....
T Consensus        87 ~~~A~~~~~~a~~~~p~~~~~~~~l~  112 (117)
T d1elwa_          87 FEEAKRTYEEGLKHEANNPQLKEGLQ  112 (117)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            78999999999999999988887654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.6e-05  Score=67.02  Aligned_cols=99  Identities=7%  Similarity=0.007  Sum_probs=90.6

Q ss_pred             ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhh
Q 045108          147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ  226 (425)
Q Consensus       147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~  226 (425)
                      +.+++++.....++..+|.+..+|..+..++..++.        +.+.+.++.++++.+|.+..||..++.+...++.  
T Consensus        24 ~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--------~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~--   93 (159)
T d1a17a_          24 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC--------YGYALGDATRAIELDKKYIKGYYRRAASNMALGK--   93 (159)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--
T ss_pred             CCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccc--------cchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC--
Confidence            479999999999999999999999999999998875        6899999999999999999999999999998886  


Q ss_pred             HHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 045108          227 VLNELKQSRNWSGLHVADNSCFHYHRRLM  255 (425)
Q Consensus       227 ~~~EL~~~~~~i~~d~~N~SaW~yR~~ll  255 (425)
                      +.+.+..+.+.+..+|.|..++.....+.
T Consensus        94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~  122 (159)
T d1a17a_          94 FRAALRDYETVVKVKPHDKDAKMKYQECN  122 (159)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            78999999999999999999887765543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=1.7e-05  Score=70.71  Aligned_cols=116  Identities=9%  Similarity=-0.055  Sum_probs=101.3

Q ss_pred             CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhc
Q 045108          126 SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS  205 (425)
Q Consensus       126 npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~  205 (425)
                      +|....++..|+.+....+   .+++++.....+|..+|+++.+|+.+..+...+++        +++.+..+.++++.+
T Consensus        33 ~~~~a~~~~~~G~~y~~~g---~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~al~~~  101 (259)
T d1xnfa_          33 DDERAQLLYERGVLYDSLG---LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN--------FDAAYEAFDSVLELD  101 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHH--------HHHhhhhhhHHHHHH
Confidence            4456678888999888874   78999999999999999999999999999888765        689999999999999


Q ss_pred             CCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 045108          206 KMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRL  254 (425)
Q Consensus       206 pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~l  254 (425)
                      |.+..+|..++.++..++.  +...++..++.++.+|.|.....+....
T Consensus       102 p~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~  148 (259)
T d1xnfa_         102 PTYNYAHLNRGIALYYGGR--DKLAQDDLLAFYQDDPNDPFRSLWLYLA  148 (259)
T ss_dssp             TTCTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHhh--HHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            9999999999999988775  6788999999999999988776655433

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.99  E-value=1e-05  Score=69.67  Aligned_cols=94  Identities=11%  Similarity=-0.065  Sum_probs=84.2

Q ss_pred             chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108          111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~  190 (425)
                      ..++++.....+|.++|++..+|+.|+.+...++   .+++++..+..++..+|++..+|.++.-++..++.        
T Consensus        19 ~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~---~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~--------   87 (201)
T d2c2la1          19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ---QPEQALADCRRALELDGQSVKAHFFLGQCQLEMES--------   87 (201)
T ss_dssp             CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTC--------
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhh---hhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCC--------
Confidence            3578999999999999999999999999999884   89999999999999999999999999999998876        


Q ss_pred             HHHHHHHHHHHHHhcCCchhhhhHH
Q 045108          191 IERESELVEKIAERSKMNYRAWNHR  215 (425)
Q Consensus       191 ~~~EL~~~~~~l~~~pkNY~AW~hR  215 (425)
                      +++.+....++++.+|.+-..|...
T Consensus        88 ~~~A~~~~~~al~l~p~~~~~~~~~  112 (201)
T d2c2la1          88 YDEAIANLQRAYSLAKEQRLNFGDD  112 (201)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCSH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHH
Confidence            6889999999999998766666543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.98  E-value=9.9e-06  Score=69.72  Aligned_cols=99  Identities=8%  Similarity=-0.060  Sum_probs=86.0

Q ss_pred             HHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHH
Q 045108          137 KLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRC  216 (425)
Q Consensus       137 r~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~  216 (425)
                      +..+...   +.+++++.++..+|..+|+++.+|.+|.-++.+++.        +++.+..+.++++.+|.|..+|.+++
T Consensus        11 Gn~~~~~---g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~--------~~~Ai~~~~~al~l~p~~~~a~~~lg   79 (201)
T d2c2la1          11 GNRLFVG---RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ--------PEQALADCRRALELDGQSVKAHFFLG   79 (201)
T ss_dssp             HHHHHHT---TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             HHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhh--------hhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence            4444444   479999999999999999999999999999988876        79999999999999999999999999


Q ss_pred             HHHHhhchhhHHHHHHHHHHHHhhcCCChhHH
Q 045108          217 WLVSFMTREQVLNELKQSRNWSGLHVADNSCF  248 (425)
Q Consensus       217 wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW  248 (425)
                      -+...++.  +++.+....+.+..+|.+...|
T Consensus        80 ~~~~~l~~--~~~A~~~~~~al~l~p~~~~~~  109 (201)
T d2c2la1          80 QCQLEMES--YDEAIANLQRAYSLAKEQRLNF  109 (201)
T ss_dssp             HHHHHTTC--HHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHCCC--HHHHHHHHHHHHHhCcccHHHH
Confidence            99998886  7888999999998887654443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.86  E-value=0.00015  Score=60.52  Aligned_cols=107  Identities=7%  Similarity=-0.113  Sum_probs=84.2

Q ss_pred             cHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccch--hHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhch-
Q 045108          148 ILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCST--LQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR-  224 (425)
Q Consensus       148 ~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~--~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~-  224 (425)
                      .+++++...+.++..+|++..+|.....++..+......  ....+++.+..+.++++.+|++..+|..++.++..++. 
T Consensus        12 ~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~   91 (145)
T d1zu2a1          12 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL   91 (145)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccc
Confidence            467788888888888888888888888888766543221  23457889999999999999999999999999876542 


Q ss_pred             --------hhHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 045108          225 --------EQVLNELKQSRNWSGLHVADNSCFHYHRRL  254 (425)
Q Consensus       225 --------~~~~~EL~~~~~~i~~d~~N~SaW~yR~~l  254 (425)
                              ..+...++..++.+..+|.|-.++......
T Consensus        92 ~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~  129 (145)
T d1zu2a1          92 TPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT  129 (145)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH
Confidence                    246788999999999999998766655443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.85  E-value=5.7e-05  Score=63.16  Aligned_cols=103  Identities=6%  Similarity=-0.055  Sum_probs=84.3

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccC-------CcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhcc
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQ-------LLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNC  184 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~-------~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~  184 (425)
                      -+++++..+.+|.++|++..+++.++.++....       ....+++++.....++..+|+++.+|+.+..++..++...
T Consensus        13 fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~   92 (145)
T d1zu2a1          13 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT   92 (145)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccch
Confidence            467889999999999999999999998886432       1235688999999999999999999999999998776533


Q ss_pred             ch---hHHhHHHHHHHHHHHHHhcCCchhhhhH
Q 045108          185 ST---LQWIIERESELVEKIAERSKMNYRAWNH  214 (425)
Q Consensus       185 ~~---~~~~~~~EL~~~~~~l~~~pkNY~AW~h  214 (425)
                      .+   ....+...+++..++++.+|.|-.++..
T Consensus        93 ~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~  125 (145)
T d1zu2a1          93 PDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS  125 (145)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhHHHHHHhHHHhhhhhhcccccCCCHHHHHHH
Confidence            22   2345788999999999999998766543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.84  E-value=0.00011  Score=58.34  Aligned_cols=92  Identities=11%  Similarity=0.020  Sum_probs=77.6

Q ss_pred             HHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhh
Q 045108          134 NSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWN  213 (425)
Q Consensus       134 n~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~  213 (425)
                      ..++..+...   +.+.+++.+.+.++..+|+++.+|.++..+..++..        +.+.+....++++.+|.|..+|.
T Consensus        20 ~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~--------~~~A~~~~~~al~~~p~~~~a~~   88 (112)
T d1hxia_          20 MEEGLSMLKL---ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK--------DGLAIIALNHARMLDPKDIAVHA   88 (112)
T ss_dssp             HHHHHHHHHT---TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHH---hhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhh--------HHHhhcccccccccccccccchH
Confidence            3345555555   478999999999999999999999999999887765        68889999999999999999999


Q ss_pred             HHHHHHHhhchhhHHHHHHHHHHHH
Q 045108          214 HRCWLVSFMTREQVLNELKQSRNWS  238 (425)
Q Consensus       214 hR~wll~~~~~~~~~~EL~~~~~~i  238 (425)
                      ....+....+.  +.+.++..+++|
T Consensus        89 ~la~~y~~~g~--~~~A~~~l~~~l  111 (112)
T d1hxia_          89 ALAVSHTNEHN--ANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHCCC--HHHHHHHHHHHh
Confidence            99998887765  678888888876

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.77  E-value=0.00036  Score=58.36  Aligned_cols=101  Identities=8%  Similarity=-0.093  Sum_probs=81.3

Q ss_pred             cHHHHHHHHHHHHhhCCCch----------------hhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhh
Q 045108          148 ILMDELRLSAVVLSHSPKSE----------------QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRA  211 (425)
Q Consensus       148 ~l~~EL~~~~~lL~~~PKsy----------------~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~A  211 (425)
                      .+.+++.....+|...|...                +++..+..++.+++.        +.+.+..+.++++.+|.|.-|
T Consensus        32 ~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~--------~~~Al~~~~~al~~~p~~~ka  103 (153)
T d2fbna1          32 EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD--------YPKAIDHASKVLKIDKNNVKA  103 (153)
T ss_dssp             CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHSTTCHHH
T ss_pred             CHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcc--------cchhhhhhhccccccchhhhh
Confidence            56777777777776554433                244455555555544        688999999999999999999


Q ss_pred             hhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108          212 WNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWN  258 (425)
Q Consensus       212 W~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l  258 (425)
                      |..++.+...++.  +...+..+.+.+..+|+|-.++.....+..++
T Consensus       104 ~~~~g~~~~~lg~--~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1         104 LYKLGVANMYFGF--LEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             HHHHHHHHHHHTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             hHHhHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999886  78999999999999999999998887777665

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.69  E-value=0.00012  Score=62.10  Aligned_cols=90  Identities=8%  Similarity=-0.124  Sum_probs=76.3

Q ss_pred             HHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHH
Q 045108          122 LLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKI  201 (425)
Q Consensus       122 lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~  201 (425)
                      ...++|....+++.|..+...++   .+++++..++.+|..+|++..+|..|..++..++.        ++..+..+.++
T Consensus        69 ~~~~~~~~~~~~~nla~~~~~~~---~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~--------~~~A~~~~~~a  137 (169)
T d1ihga1          69 GAKLQPVALSCVLNIGACKLKMS---DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKE--------YDQALADLKKA  137 (169)
T ss_dssp             HGGGHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHH
T ss_pred             HHHhChhhHHHHHHHHHHHHhhc---ccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccC--------HHHHHHHHHHH
Confidence            34567888889999998888874   78999999999999999999999999999988875        68899999999


Q ss_pred             HHhcCCchhhhhHHHHHHHhh
Q 045108          202 AERSKMNYRAWNHRCWLVSFM  222 (425)
Q Consensus       202 l~~~pkNY~AW~hR~wll~~~  222 (425)
                      ++.+|.|-.+......+...+
T Consensus       138 l~l~p~n~~~~~~l~~~~~~l  158 (169)
T d1ihga1         138 QEIAPEDKAIQAELLKVKQKI  158 (169)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHH
Confidence            999999988877766655443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=0.00014  Score=59.25  Aligned_cols=105  Identities=10%  Similarity=-0.065  Sum_probs=86.3

Q ss_pred             ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchh--hhhHHHHHHHhhch
Q 045108          147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYR--AWNHRCWLVSFMTR  224 (425)
Q Consensus       147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~--AW~hR~wll~~~~~  224 (425)
                      ..++++-+....+|..+|.+..+.....|++.+...     ...+.+.+.+++++++.+|.+.+  +|.+.+.+...++.
T Consensus        13 ~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~-----~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~   87 (122)
T d1nzna_          13 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRY-----NDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE   87 (122)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSS-----HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc-----hHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhh
Confidence            357788889999999999999999998888854222     12367788999999999988866  89999988888876


Q ss_pred             hhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108          225 EQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWN  258 (425)
Q Consensus       225 ~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l  258 (425)
                        +++.+.++++.++.+|.|..|...+..+..++
T Consensus        88 --~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          88 --YEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             --HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             --hHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence              78899999999999999999998888777664

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=0.0014  Score=56.82  Aligned_cols=121  Identities=4%  Similarity=-0.080  Sum_probs=96.8

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      -+++++....   +.|.+..+|+.++.+....+   .+++++..++.++..+|+++.+|..|..+..++++        +
T Consensus        21 ~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g---~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~--------~   86 (192)
T d1hh8a_          21 WKGALDAFSA---VQDPHSRICFNIGCMYTILK---NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK--------Y   86 (192)
T ss_dssp             HHHHHHHHHT---SSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred             HHHHHHHHHh---cCCCCHHHHHHHHHHHHHcC---CchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcc--------H
Confidence            3566766654   46778899999999998874   89999999999999999999999999999988876        6


Q ss_pred             HHHHHHHHHHHHhcCCch----------------hhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHH
Q 045108          192 ERESELVEKIAERSKMNY----------------RAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCF  248 (425)
Q Consensus       192 ~~EL~~~~~~l~~~pkNY----------------~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW  248 (425)
                      ++.+..+.++++..++|.                .++..+..+...++.  +.+.++.+.+.+..++..-+..
T Consensus        87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~--~~~A~~~l~~A~~~~~~~~~~~  157 (192)
T d1hh8a_          87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE--WKKAEEQLALATSMKSEPRHSK  157 (192)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCSGGGGH
T ss_pred             HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCcchHH
Confidence            888899999998877664                334556666666554  7788888889998888765444

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=0.00022  Score=57.96  Aligned_cols=104  Identities=9%  Similarity=-0.060  Sum_probs=87.4

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCch--hhhhHHHHHHHHHhhccchhHH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE--QAWSHRRWVINMISRNCSTLQW  189 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy--~~W~hRrwll~~l~~~~~~~~~  189 (425)
                      -+++-+.+..+|.++|++..+......+|.......++++++.+++.+|..+|+..  .+|.+...+..++++       
T Consensus        15 l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~-------   87 (122)
T d1nzna_          15 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE-------   87 (122)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC-------
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhh-------
Confidence            35677889999999999999999999888653223467789999999999998775  489999998888876       


Q ss_pred             hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhc
Q 045108          190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMT  223 (425)
Q Consensus       190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~  223 (425)
                       +++.+.++.++++.+|.|-.|...+.-|.+++.
T Consensus        88 -~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~  120 (122)
T d1nzna_          88 -YEKALKYVRGLLQTEPQNNQAKELERLIDKAMK  120 (122)
T ss_dssp             -HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence             789999999999999999999999888776643

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.55  E-value=0.00041  Score=54.90  Aligned_cols=80  Identities=10%  Similarity=-0.070  Sum_probs=70.7

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      .++++...+.+|..+|++..+|..++.+....   ..+.+++.....++..+|.+..+|..+..+....+.        +
T Consensus        32 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~---~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~--------~  100 (112)
T d1hxia_          32 LAEAALAFEAVCQKEPEREEAWRSLGLTQAEN---EKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN--------A  100 (112)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH--------H
T ss_pred             hHHHHHHHhhhcccccccchhhhhhhhhhhhh---hhHHHhhcccccccccccccccchHHHHHHHHHCCC--------H
Confidence            47799999999999999999999999999887   479999999999999999999999999999888765        5


Q ss_pred             HHHHHHHHHHH
Q 045108          192 ERESELVEKIA  202 (425)
Q Consensus       192 ~~EL~~~~~~l  202 (425)
                      .+.++..++.+
T Consensus       101 ~~A~~~l~~~l  111 (112)
T d1hxia_         101 NAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            67777666654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.0019  Score=55.91  Aligned_cols=99  Identities=10%  Similarity=0.066  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCch
Q 045108          130 ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNY  209 (425)
Q Consensus       130 ~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY  209 (425)
                      ...|| ++......   .+++.++...+.   ..|.++.+|..+.-+...++.        +++.+..+.++++.+|.+.
T Consensus         6 ~~l~~-~g~~~~~~---~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~--------~~~A~~~~~kAl~ldp~~~   70 (192)
T d1hh8a_           6 ISLWN-EGVLAADK---KDWKGALDAFSA---VQDPHSRICFNIGCMYTILKN--------MTEAEKAFTRSINRDKHLA   70 (192)
T ss_dssp             HHHHH-HHHHHHHT---TCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHH-HHHHHHHC---CCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCC--------chhHHHHHHHHHHHhhhhh
Confidence            45675 45555555   478999988775   467778899999998887765        7899999999999999999


Q ss_pred             hhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCh
Q 045108          210 RAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADN  245 (425)
Q Consensus       210 ~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~  245 (425)
                      .+|..|+.+...++.  ++..+..+++.+...+.|.
T Consensus        71 ~a~~~~g~~~~~~g~--~~~A~~~~~kAl~~~~~n~  104 (192)
T d1hh8a_          71 VAYFQRGMLYYQTEK--YDLAIKDLKEALIQLRGNQ  104 (192)
T ss_dssp             HHHHHHHHHHHHTTC--HHHHHHHHHHHHHTTTTCS
T ss_pred             hhHHHHHHHHHhhcc--HHHHHHHHHHHHHhCccCc
Confidence            999999999998886  7888999999998776654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.34  E-value=0.0032  Score=52.92  Aligned_cols=101  Identities=7%  Similarity=-0.085  Sum_probs=78.4

Q ss_pred             cHHHHHHHHHHHHhhCCCch---------------hhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhh
Q 045108          148 ILMDELRLSAVVLSHSPKSE---------------QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAW  212 (425)
Q Consensus       148 ~l~~EL~~~~~lL~~~PKsy---------------~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW  212 (425)
                      .+.+++.+...+|...|..+               .++..|.-+..+++.        +.+.+..+.++++.+|.|..+|
T Consensus        30 ~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~--------~~~Ai~~~~~al~l~p~~~~a~  101 (168)
T d1kt1a1          30 KYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE--------YTKAVECCDKALGLDSANEKGL  101 (168)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhh--------cccchhhhhhhhhcccchHHHH
Confidence            56666666666665444333               234445555555543        7899999999999999999999


Q ss_pred             hHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108          213 NHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWN  258 (425)
Q Consensus       213 ~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l  258 (425)
                      ..|+.+...++.  +.+.+..+.+.+..+|.|-.++..+..+...+
T Consensus       102 ~~~~~~~~~l~~--~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1         102 YRRGEAQLLMNE--FESAKGDFEKVLEVNPQNKAARLQIFMCQKKA  145 (168)
T ss_dssp             HHHHHHHHHTTC--HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999998886  88999999999999999999988877765554

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.0021  Score=54.36  Aligned_cols=122  Identities=7%  Similarity=-0.132  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhcc----c---hhHHhHHHHHHHHHHHHHh
Q 045108          132 AWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNC----S---TLQWIIERESELVEKIAER  204 (425)
Q Consensus       132 aWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~----~---~~~~~~~~EL~~~~~~l~~  204 (425)
                      ..+-++..+...   ..+++++...+.+|...|.....+......+..+....    .   --...+.+.+..+.++++.
T Consensus        15 ~l~~~G~~~~~~---~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          15 IVKERGTVYFKE---GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHH---TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc---CCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            334455555444   36888888888888888877766655433333221100    0   0012478999999999999


Q ss_pred             cCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108          205 SKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWN  258 (425)
Q Consensus       205 ~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l  258 (425)
                      +|.|..+|..++.+...++.  +...+..+.+.++.+|.|-.+-.....+...+
T Consensus        92 ~p~~~~a~~~~g~~~~~~g~--~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  143 (170)
T d1p5qa1          92 DSNNEKGLSRRGEAHLAVND--FELARADFQKVLQLYPNNKAAKTQLAVCQQRI  143 (170)
T ss_dssp             CTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred             cccchhhhHHHHHHHHHhhh--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999886  78999999999999999988877766665543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.31  E-value=0.0013  Score=55.37  Aligned_cols=89  Identities=9%  Similarity=-0.105  Sum_probs=76.7

Q ss_pred             HhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHh
Q 045108          160 LSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSG  239 (425)
Q Consensus       160 L~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~  239 (425)
                      ...+|....+|..|..+..+++.        +++.+..+.++++.+|.|..||..++-+...++.  +...++...+.++
T Consensus        70 ~~~~~~~~~~~~nla~~~~~~~~--------~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~--~~~A~~~~~~al~  139 (169)
T d1ihga1          70 AKLQPVALSCVLNIGACKLKMSD--------WQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKE--YDQALADLKKAQE  139 (169)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHH
T ss_pred             HHhChhhHHHHHHHHHHHHhhcc--------cchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccC--HHHHHHHHHHHHH
Confidence            34567778889999888887765        7899999999999999999999999999998876  7899999999999


Q ss_pred             hcCCChhHHHHHHHHHHHh
Q 045108          240 LHVADNSCFHYHRRLMIWN  258 (425)
Q Consensus       240 ~d~~N~SaW~yR~~ll~~l  258 (425)
                      .+|.|..+......+...+
T Consensus       140 l~p~n~~~~~~l~~~~~~l  158 (169)
T d1ihga1         140 IAPEDKAIQAELLKVKQKI  158 (169)
T ss_dssp             HCTTCHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHH
Confidence            9999999887776665543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.29  E-value=0.002  Score=53.50  Aligned_cols=82  Identities=12%  Similarity=-0.026  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchh
Q 045108          131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYR  210 (425)
Q Consensus       131 TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~  210 (425)
                      ++++-|..+...++   .+.+.+..+..+|..+|.+..+|..+..++..++.        +...+..+.++++.+|.|-.
T Consensus        68 ~~~~Nla~~~~~l~---~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~--------~~~A~~~~~~al~l~P~n~~  136 (153)
T d2fbna1          68 SCNLNLATCYNKNK---DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF--------LEEAKENLYKAASLNPNNLD  136 (153)
T ss_dssp             HHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHhhHHHHHHHhc---ccchhhhhhhccccccchhhhhhHHhHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHH
Confidence            56677888888774   79999999999999999999999999999999876        68999999999999999999


Q ss_pred             hhhHHHHHHHhhc
Q 045108          211 AWNHRCWLVSFMT  223 (425)
Q Consensus       211 AW~hR~wll~~~~  223 (425)
                      ++.....+..++.
T Consensus       137 ~~~~l~~~~~kl~  149 (153)
T d2fbna1         137 IRNSYELCVNKLK  149 (153)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9888777766543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.24  E-value=0.0034  Score=52.79  Aligned_cols=82  Identities=12%  Similarity=0.009  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchh
Q 045108          131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYR  210 (425)
Q Consensus       131 TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~  210 (425)
                      .+++.|..+...+   ..+.+.+..++.+|..+|++..+|..|..++..++.        +++.+..+.++++.+|.|-.
T Consensus        65 ~~~~Nla~~~~~l---~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~--------~~~A~~~~~~al~l~P~n~~  133 (168)
T d1kt1a1          65 AAFLNLAMCYLKL---REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE--------FESAKGDFEKVLEVNPQNKA  133 (168)
T ss_dssp             HHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHHhHHHHHHHh---hhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHH
Confidence            4555677777777   489999999999999999999999999999988876        78999999999999999999


Q ss_pred             hhhHHHHHHHhhc
Q 045108          211 AWNHRCWLVSFMT  223 (425)
Q Consensus       211 AW~hR~wll~~~~  223 (425)
                      ++..+..+...+.
T Consensus       134 ~~~~l~~~~~~~~  146 (168)
T d1kt1a1         134 ARLQIFMCQKKAK  146 (168)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9888877766554

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.0047  Score=52.08  Aligned_cols=81  Identities=10%  Similarity=-0.019  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchh
Q 045108          131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYR  210 (425)
Q Consensus       131 TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~  210 (425)
                      .+++.+..+....   ..+++.+..++.+|..+|.+..+|..+..+..+++.        +.+.+..+.++++.+|.|-.
T Consensus        63 ~~~~nla~~y~k~---~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~--------~~~A~~~~~~al~l~P~n~~  131 (170)
T d1p5qa1          63 ASHLNLAMCHLKL---QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND--------FELARADFQKVLQLYPNNKA  131 (170)
T ss_dssp             HHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCSSCHH
T ss_pred             HHHHHHHHHHHhh---hhcccccchhhhhhhccccchhhhHHHHHHHHHhhh--------HHHHHHHHHHHHHhCCCCHH
Confidence            4566677777776   479999999999999999999999999999998876        78999999999999999988


Q ss_pred             hhhHHHHHHHhh
Q 045108          211 AWNHRCWLVSFM  222 (425)
Q Consensus       211 AW~hR~wll~~~  222 (425)
                      +-....-+...+
T Consensus       132 ~~~~l~~~~~~~  143 (170)
T d1p5qa1         132 AKTQLAVCQQRI  143 (170)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            766655555443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.0015  Score=52.70  Aligned_cols=88  Identities=13%  Similarity=0.024  Sum_probs=72.7

Q ss_pred             ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhch--
Q 045108          147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR--  224 (425)
Q Consensus       147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~--  224 (425)
                      ..+.+++...+.+|..+|++..+|.+|..++.+++.        +++.+..+.++++.+|++..+|.....++..++.  
T Consensus        18 ~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~   89 (128)
T d1elra_          18 KDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD--------YNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY   89 (128)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCc--------hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999998876        7899999999999999999999888887777664  


Q ss_pred             ---hhHHHHHHHHHHHHhhcC
Q 045108          225 ---EQVLNELKQSRNWSGLHV  242 (425)
Q Consensus       225 ---~~~~~EL~~~~~~i~~d~  242 (425)
                         ..+.+.+.+..+.+..++
T Consensus        90 ~~~~~~~~A~~~~~kal~~~~  110 (128)
T d1elra_          90 FKEEKYKDAIHFYNKSLAEHR  110 (128)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHhCCHHHHHHHHHHHHhcCC
Confidence               135566666666665554

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.07  E-value=0.012  Score=53.70  Aligned_cols=166  Identities=7%  Similarity=-0.014  Sum_probs=118.8

Q ss_pred             chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccC-----------CcccHHHHHHHHHHHHh-hCCCchhhhhHHHHHHH
Q 045108          111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQ-----------LLPILMDELRLSAVVLS-HSPKSEQAWSHRRWVIN  178 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~-----------~~~~l~~EL~~~~~lL~-~~PKsy~~W~hRrwll~  178 (425)
                      ...++....+.+|...|.+..+|..--+.+....           .....++...+...++. .+|++..+|..-..+..
T Consensus        31 ~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~  110 (308)
T d2onda1          31 ITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            3466778889999999999999976554443211           01234667788888886 48999999987666665


Q ss_pred             HHhhccchhHHhHHHHHHHHHHHHHhcCCchh-hhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 045108          179 MISRNCSTLQWIIERESELVEKIAERSKMNYR-AWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIW  257 (425)
Q Consensus       179 ~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~-AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~  257 (425)
                      ..+.        ++....+..++++..|+++. +|.....++.+.+.  .+...+...+.+...|.+.+.|.....+...
T Consensus       111 ~~~~--------~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~--~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~  180 (308)
T d2onda1         111 SRMK--------YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG--IKSGRMIFKKAREDARTRHHVYVTAALMEYY  180 (308)
T ss_dssp             HTTC--------HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC--HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH
T ss_pred             hccc--------HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            5443        56777889999999999976 79887777766554  5677788899999999999988876655433


Q ss_pred             hhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 045108          258 NLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHR  305 (425)
Q Consensus       258 l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yr  305 (425)
                      ..+.                   .+........++..+|.+..+|...
T Consensus       181 ~~~~-------------------~~~a~~i~e~~l~~~p~~~~~w~~y  209 (308)
T d2onda1         181 CSKD-------------------KSVAFKIFELGLKKYGDIPEYVLAY  209 (308)
T ss_dssp             TSCC-------------------HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hccC-------------------HHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            2111                   2333445567777899999999764

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.0014  Score=52.75  Aligned_cols=91  Identities=8%  Similarity=-0.047  Sum_probs=74.7

Q ss_pred             hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108          112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII  191 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~  191 (425)
                      -++++.+...+|.++|++..+|..|..+....+   .+++++..+..++..+|++...|.....++..++..... ...+
T Consensus        20 y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~-~~~~   95 (128)
T d1elra_          20 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKG---DYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK-EEKY   95 (128)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcC---chHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHH-hCCH
Confidence            478999999999999999999999999999884   899999999999999999999999888887776642211 1236


Q ss_pred             HHHHHHHHHHHHhcC
Q 045108          192 ERESELVEKIAERSK  206 (425)
Q Consensus       192 ~~EL~~~~~~l~~~p  206 (425)
                      .+.+.+..+++..++
T Consensus        96 ~~A~~~~~kal~~~~  110 (128)
T d1elra_          96 KDAIHFYNKSLAEHR  110 (128)
T ss_dssp             HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhcCC
Confidence            677777777776655

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.0062  Score=60.34  Aligned_cols=166  Identities=9%  Similarity=-0.054  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHhCCccHHH-------HHHH-HHHH---HccC------C--------cccHHHHHHHHHHHH-------h
Q 045108          114 EVMIHSKALLLLSCDFATA-------WNSR-KLIV---SNKQ------L--------LPILMDELRLSAVVL-------S  161 (425)
Q Consensus       114 ~~L~~t~~lLl~npe~~Ta-------Wn~R-r~lL---~~~~------~--------~~~l~~EL~~~~~lL-------~  161 (425)
                      +.-++.+.+|..+|++..+       |+.. +..+   ....      .        ...+.++..+...++       .
T Consensus        35 ~l~eaye~~i~~dp~~a~~~~~e~~Lw~~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~  114 (497)
T d1ya0a1          35 ALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFN  114 (497)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHTHHHHHHHHHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred             hHHHHHHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            3446688999999988654       5421 1111   1100      0        012333344444443       4


Q ss_pred             hCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhc
Q 045108          162 HSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLH  241 (425)
Q Consensus       162 ~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d  241 (425)
                      .+|++..+|.....+....+.        ....+....+++..+|  +.++.+.+-+....+.  +...+.++.+.+..+
T Consensus       115 l~~~~~~~~~~lg~~~~~~~~--------~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~--~~~A~~~y~~A~~l~  182 (497)
T d1ya0a1         115 VDLPCRVKSSQLGIISNKQTH--------TSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQ--TSQAESYYRHAAQLV  182 (497)
T ss_dssp             ------------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHC
T ss_pred             CChhhHHHHHHhHHHHHhCCC--------HHHHHHHHHHHhCCCH--HHHHHHHHHHHHHccc--HHHHHHHHHHHHHHC
Confidence            678888888777766655443        2334444445555443  5677777777776654  788999999999999


Q ss_pred             CCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q 045108          242 VADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLY  311 (425)
Q Consensus       242 ~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~  311 (425)
                      |.|-.+|+++..+.... +                   -..+.+.+..+.|..+|.+..++.....++..
T Consensus       183 P~~~~~~~~Lg~~~~~~-~-------------------~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         183 PSNGQPYNQLAILASSK-G-------------------DHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             TTBSHHHHHHHHHHHHT-T-------------------CHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHc-C-------------------CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            99999999999887653 1                   14567888888999999999999988766654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.48  E-value=0.11  Score=46.88  Aligned_cols=135  Identities=5%  Similarity=-0.110  Sum_probs=104.9

Q ss_pred             chHHHHHHHHHHHH-hCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHHHhhccchhH
Q 045108          111 VAIEVMIHSKALLL-LSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQ-AWSHRRWVINMISRNCSTLQ  188 (425)
Q Consensus       111 ~~~~~L~~t~~lLl-~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~-~W~hRrwll~~l~~~~~~~~  188 (425)
                      ..+++.+....++. .+|.....|..-..+....+   ..+....+.+.+|...|+++. +|.....++.+.+.      
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~---~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~------  149 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRM---KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG------  149 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC------
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCC------
Confidence            34667778888886 58999999998888777764   688999999999999998865 79888777766554      


Q ss_pred             HhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 045108          189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIW  257 (425)
Q Consensus       189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~  257 (425)
                        ++...++..++++..|.+.+.|.....+..+... ..+......+..+..+|.+...|....-++..
T Consensus       150 --~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~-~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~  215 (308)
T d2onda1         150 --IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK-DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH  215 (308)
T ss_dssp             --HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             --hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence              4677788999999999999998876655444322 35667788899999999999999776555443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.021  Score=56.33  Aligned_cols=133  Identities=8%  Similarity=-0.020  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHH
Q 045108          113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIE  192 (425)
Q Consensus       113 ~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~  192 (425)
                      ..++......+.++|++..+|+..+......+   ...+++......+..+|  +.++.+...+......        ++
T Consensus       103 ~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~--------~~  169 (497)
T d1ya0a1         103 TQLLQELCTVFNVDLPCRVKSSQLGIISNKQT---HTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQ--------TS  169 (497)
T ss_dssp             HHHHHHHTC----------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTC--------HH
T ss_pred             HHHHHHHHHHHCCChhhHHHHHHhHHHHHhCC---CHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHccc--------HH
Confidence            34455555666789999999988887776553   44555655566665543  4566666665555433        78


Q ss_pred             HHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhc
Q 045108          193 RESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLE  260 (425)
Q Consensus       193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~  260 (425)
                      +.+....++++.+|.|..+|++.+.+....+.  ..+.+.++.+.+..++....|+.....++.+...
T Consensus       170 ~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~--~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         170 QAESYYRHAAQLVPSNGQPYNQLAILASSKGD--HLTTIFYYCRSIAVKFPFPAASTNLQKALSKALE  235 (497)
T ss_dssp             HHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC--HHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh
Confidence            89999999999999999999999999987765  6788999999999999999999999888877543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.85  E-value=0.14  Score=38.17  Aligned_cols=77  Identities=10%  Similarity=0.026  Sum_probs=56.2

Q ss_pred             HHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhh-------HHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCC
Q 045108          135 SRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWS-------HRRWVINMISRNCSTLQWIIERESELVEKIAERSKM  207 (425)
Q Consensus       135 ~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~-------hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pk  207 (425)
                      ..+.+....   +++.+++.+...++.+.|++...|.       +..++..++++        +++.+....++++.+|.
T Consensus        10 ~lG~~~~~~---g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~--------~~~A~~~y~~aL~l~P~   78 (95)
T d1tjca_          10 ELGKVAYTE---ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD--------LDKALLLTKKLLELDPE   78 (95)
T ss_dssp             HHHHHHHHT---TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHC---CCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCC--------hHHHHHHHHHHHHhCcC
Confidence            345555555   4799999999999998877765544       44444444433        78899999999999999


Q ss_pred             chhhhhHHHHHHHhh
Q 045108          208 NYRAWNHRCWLVSFM  222 (425)
Q Consensus       208 NY~AW~hR~wll~~~  222 (425)
                      |-.|+.....+-+.+
T Consensus        79 ~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          79 HQRANGNLKYFEYIM   93 (95)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999998877665443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.46  E-value=0.16  Score=37.93  Aligned_cols=66  Identities=12%  Similarity=0.074  Sum_probs=49.7

Q ss_pred             hHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHH
Q 045108          112 AIEVMIHSKALLLLSCDF-------ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMI  180 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~-------~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l  180 (425)
                      -.+++.+...+|.++|++       ..+++..+.+....   +.+++++.....+|..+|++..+++....+-+.+
T Consensus        21 y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~---g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          21 YYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQ---GDLDKALLLTKKLLELDPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhc---CChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            355666666666665554       45667777777766   4899999999999999999999999887654433

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=93.32  E-value=0.079  Score=43.22  Aligned_cols=93  Identities=5%  Similarity=-0.103  Sum_probs=64.9

Q ss_pred             ccHHHHHHHHHHHHhhCCCch------------hhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchh----
Q 045108          147 PILMDELRLSAVVLSHSPKSE------------QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYR----  210 (425)
Q Consensus       147 ~~l~~EL~~~~~lL~~~PKsy------------~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~----  210 (425)
                      ..+++++...+.+|.++|+.+            .+|+.+..++..++.        +++.+..+.++++.+|++..    
T Consensus        23 g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~--------~~~A~~~~~~al~~~~~~~~~~~~   94 (156)
T d2hr2a1          23 GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS--------FDEALHSADKALHYFNRRGELNQD   94 (156)
T ss_dssp             TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHCCTTST
T ss_pred             CCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCc--------cchhhHhhhhhhhccccccccccc
Confidence            368999999999999888875            355566666666554        56777777777776655422    


Q ss_pred             -------hhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHH
Q 045108          211 -------AWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFH  249 (425)
Q Consensus       211 -------AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~  249 (425)
                             ++..++-++..++.  +++.++...+.+++.+.+.....
T Consensus        95 ~~~~~~~a~~~~g~~~~~lg~--~eeA~~~~~~Al~l~~~~~~~~~  138 (156)
T d2hr2a1          95 EGKLWISAVYSRALALDGLGR--GAEAMPEFKKVVEMIEERKGETP  138 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHCCSCCT
T ss_pred             ccchhHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHhhHHhhchHH
Confidence                   44556777777765  78889999998877655544443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=92.45  E-value=0.12  Score=42.14  Aligned_cols=98  Identities=10%  Similarity=0.023  Sum_probs=72.1

Q ss_pred             hHHHHHHHHHHHHhCCcc------------HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchh-----------
Q 045108          112 AIEVMIHSKALLLLSCDF------------ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQ-----------  168 (425)
Q Consensus       112 ~~~~L~~t~~lLl~npe~------------~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~-----------  168 (425)
                      -++++.....+|.++|+.            ..+|+.+..++..++   .+++.+..++.+|..+|+...           
T Consensus        25 y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  101 (156)
T d2hr2a1          25 YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR---SFDEALHSADKALHYFNRRGELNQDEGKLWIS  101 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcC---ccchhhHhhhhhhhcccccccccccccchhHH
Confidence            366888888888888764            367888888888874   788889888888876554322           


Q ss_pred             hhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHH
Q 045108          169 AWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVS  220 (425)
Q Consensus       169 ~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~  220 (425)
                      +++.|.-++..+++        +++.+....++++..|+......-+.-++.
T Consensus       102 a~~~~g~~~~~lg~--------~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~  145 (156)
T d2hr2a1         102 AVYSRALALDGLGR--------GAEAMPEFKKVVEMIEERKGETPGKERMME  145 (156)
T ss_dssp             HHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHCCSCCTTHHHHHH
T ss_pred             HHhhhHHHHHHHHH--------HHHHHHHHHHHHHhhHHhhchHHHHHHHHH
Confidence            34455566665554        689999999999999988877765554444

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.07  E-value=3.8  Score=35.73  Aligned_cols=148  Identities=5%  Similarity=-0.102  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHh------CCccHHHHHHHHHHHHccCCcccHHHHHHH
Q 045108           82 YKAAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLL------SCDFATAWNSRKLIVSNKQLLPILMDELRL  155 (425)
Q Consensus        82 y~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~------npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~  155 (425)
                      |..|...+.++-.-|+..++          -++++++...++.+      .++..++++....+....+   .+.+.+..
T Consensus        33 ~~~Aa~~y~~aa~~y~~~~~----------~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~---~~~~A~~~   99 (290)
T d1qqea_          33 FEEAADLCVQAATIYRLRKE----------LNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG---NSVNAVDS   99 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC----------THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCcC----------HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC---CcHHHHHH
Confidence            55555555555444544322          36788888888877      3445678888888887774   78899999


Q ss_pred             HHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCc------hhhhhHHHHHHHhhchhhHHH
Q 045108          156 SAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN------YRAWNHRCWLVSFMTREQVLN  229 (425)
Q Consensus       156 ~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN------Y~AW~hR~wll~~~~~~~~~~  229 (425)
                      ...++...++.-.. ..-.-++..+......-...+++.+.+..++++.+++.      -.++.....+....+.  +.+
T Consensus       100 ~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~--y~~  176 (290)
T d1qqea_         100 LENAIQIFTHRGQF-RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ--YIE  176 (290)
T ss_dssp             HHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHH
T ss_pred             HHHhhHHhhhcccc-hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcCh--HHH
Confidence            99888765444210 00011111211100000013678888888888765443      2335555666655554  889


Q ss_pred             HHHHHHHHHhhcCCCh
Q 045108          230 ELKQSRNWSGLHVADN  245 (425)
Q Consensus       230 EL~~~~~~i~~d~~N~  245 (425)
                      .+..+.+.+...+.+.
T Consensus       177 A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         177 ASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHHHHHHTTSSCT
T ss_pred             HHHHHHHHHHhCccch
Confidence            9999999999887764

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=90.72  E-value=0.21  Score=44.92  Aligned_cols=128  Identities=6%  Similarity=-0.158  Sum_probs=89.1

Q ss_pred             chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108          111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI  190 (425)
Q Consensus       111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~  190 (425)
                      ..++++.....+|..+|++..++.....++...+   .+++++..+..++..+|++..+|...+.++......       
T Consensus        11 ~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G---~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~-------   80 (264)
T d1zbpa1          11 QLQQALELLIEAIKASPKDASLRSSFIELLCIDG---DFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR-------   80 (264)
T ss_dssp             CHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH-------
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccc-------
Confidence            3588999999999999999999999999988874   899999999999999999999998877776543321       


Q ss_pred             HHHHHHHHHH-HHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHH
Q 045108          191 IERESELVEK-IAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYH  251 (425)
Q Consensus       191 ~~~EL~~~~~-~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR  251 (425)
                       .+.+.-... .+..+|.+..++..+.-+....+  +.++..+...+.....|.+-..|+-+
T Consensus        81 -~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~g--d~~~A~~~~~~a~e~~p~~~~~~~~~  139 (264)
T d1zbpa1          81 -KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQ--DYEQVSELALQIEELRQEKGFLANDT  139 (264)
T ss_dssp             -HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCCCCCEEETTE
T ss_pred             -HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHhcCCCCCcccccc
Confidence             111110001 11123433333333333333323  36778888999999998887776654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.65  E-value=0.79  Score=38.26  Aligned_cols=69  Identities=10%  Similarity=-0.006  Sum_probs=55.9

Q ss_pred             HHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHH
Q 045108          122 LLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKI  201 (425)
Q Consensus       122 lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~  201 (425)
                      ...+.+.+..+|..+..++...+   .+.+.+..+..++..+|.+..+|.+...++..++.        ..+.+....++
T Consensus        59 r~~l~~~~~~a~~~la~~~~~~g---~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr--------~~eAl~~y~~~  127 (179)
T d2ff4a2          59 ATALVEDKVLAHTAKAEAEIACG---RASAVIAELEALTFEHPYREPLWTQLITAYYLSDR--------QSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTC--------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCC---CchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC--------HHHHHHHHHHH
Confidence            34556677889999988888774   89999999999999999999999999999888776        35555555444

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.09  E-value=5  Score=32.92  Aligned_cols=101  Identities=8%  Similarity=-0.088  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCch--------hhhhHHHHHHHHHhhccc------hhHHhHHHHHHH
Q 045108          132 AWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE--------QAWSHRRWVINMISRNCS------TLQWIIERESEL  197 (425)
Q Consensus       132 aWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy--------~~W~hRrwll~~l~~~~~------~~~~~~~~EL~~  197 (425)
                      ++..++..+...   +..++....+..+|...+..+        .++..|..+-.....-..      .....+.+.+..
T Consensus        13 ~~~~~g~~~~~~---g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~   89 (179)
T d2ff4a2          13 AEKTAGVHAAAA---GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE   89 (179)
T ss_dssp             HHHHHHHHHHHT---TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHC---CCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            344444444444   367778888888888765443        233333322211110000      011247889999


Q ss_pred             HHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHH
Q 045108          198 VEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNW  237 (425)
Q Consensus       198 ~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~  237 (425)
                      +.++++.+|.+-.+|.+...++..++.  ..+.+..+.+.
T Consensus        90 ~~~al~~~P~~e~~~~~l~~al~~~Gr--~~eAl~~y~~~  127 (179)
T d2ff4a2          90 LEALTFEHPYREPLWTQLITAYYLSDR--QSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHTTTC--HHHHHHHHHHH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhcC--HHHHHHHHHHH
Confidence            999999999999999999999988876  45556555554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.94  E-value=2.1  Score=33.82  Aligned_cols=68  Identities=4%  Similarity=-0.039  Sum_probs=44.8

Q ss_pred             ccHHHHHHHHHHHHhhCCCch-hhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhh
Q 045108          147 PILMDELRLSAVVLSHSPKSE-QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFM  222 (425)
Q Consensus       147 ~~l~~EL~~~~~lL~~~PKsy-~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~  222 (425)
                      ..+++.+.++..++..+|... ..|.|-...--++++        +.+.+.++.++++.+|.|-.|..-+.-|-+.+
T Consensus        52 ~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgd--------y~~A~~~~~~~L~ieP~n~qA~~L~~~Ie~~~  120 (124)
T d2pqrb1          52 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE--------YSMAKRYVDTLFEHERNNKQVGALKSMVEDKI  120 (124)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Confidence            456777777777777777643 455555544444443        67777888888888888877776666555443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.06  E-value=2.1  Score=33.83  Aligned_cols=69  Identities=7%  Similarity=-0.112  Sum_probs=57.0

Q ss_pred             cchHHHHHHHHHHHHhCCccH-HHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHh
Q 045108          110 TVAIEVMIHSKALLLLSCDFA-TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMIS  181 (425)
Q Consensus       110 ~~~~~~L~~t~~lLl~npe~~-TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~  181 (425)
                      ....+++.+...++..+|++. .+|.+-...--.+   +.+.+++.+++.+|..+|.+.++.+-+.-|-.++.
T Consensus        52 ~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yykl---gdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie~~~~  121 (124)
T d2pqrb1          52 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKL---GEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQ  121 (124)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHh
Confidence            345778889999999999875 6888777666666   48999999999999999999999988887766654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=84.34  E-value=1.5  Score=39.00  Aligned_cols=130  Identities=12%  Similarity=-0.011  Sum_probs=82.4

Q ss_pred             ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhh
Q 045108          147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ  226 (425)
Q Consensus       147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~  226 (425)
                      ..+++++..+...+..+|++..++...--++...++        +++.+..+.++++.+|.+-.+|...+.++.....  
T Consensus        10 G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~--------~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~--   79 (264)
T d1zbpa1          10 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGD--------FERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA--   79 (264)
T ss_dssp             TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH--
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccc--
Confidence            468888999999999999999888888777777665        6888888899999999888888776666543221  


Q ss_pred             HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 045108          227 VLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHR  305 (425)
Q Consensus       227 ~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yr  305 (425)
                      ..+.+.....  ..-+.+...|..+..........                 .-.++..+...++....|..--.|+-+
T Consensus        80 ~~~a~~~~~~--~~~~~~p~~~~~~l~~a~~~~~~-----------------gd~~~A~~~~~~a~e~~p~~~~~~~~~  139 (264)
T d1zbpa1          80 RKDFAQGAAT--AKVLGENEELTKSLVSFNLSMVS-----------------QDYEQVSELALQIEELRQEKGFLANDT  139 (264)
T ss_dssp             HHHHTTSCCC--EECCCSCHHHHHHHHHHHHHHHH-----------------TCHHHHHHHHHHHHHHCCCCCEEETTE
T ss_pred             cHHHHHHhhh--hhcccCchHHHHHHHHHHHHHhC-----------------CCHHHHHHHHHHHHhcCCCCCcccccc
Confidence            0111110000  01122334554433322222111                 114566777788888899988888654