Citrus Sinensis ID: 045110


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370------
MNRDGLVVTAVDQSSLKKKTAVSSSWILLDREAQSTTLDVDKHVIMRRVQIHARDLRILDPMLNYPSTILGREKVIVLNLEHIKAIITADEVLLRDPMDDNVIPIVEQLQRRLASDYPISQGQGEEEDNHPGVRNNFETEAICSFLDARTRELETDAYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMADLYLSRKLAVASSPVSGSGAPHWFLNSPTIGSKISRTISRGSMETTQEENDVEELEMLLEAYFMQIDGTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLCSGTVCLSVYSLVAAIFGMNIPYTWKTGHGYVFKWVVVITGIVCALLFSIIIFYARHKGLVGS
ccccccccccccccccccccccEEEEEEEcccccEEEEEEcHHHHHHHccccccccccccccccccEEEcccccEEEEEcccEEEEEEccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
cccccccccccccccccccccccEEEEEEcccccEEEEEccHHHHHHHccccHHHHHHccccccccccEEccccEEEEEHHHEEEEEcccEEEEEccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
MNRDGLVVTAVdqsslkkktaVSSSWILLDReaqsttldvdkHVIMRRVQIHArdlrildpmlnypstilgREKVIVLNLEHIKAIITADevllrdpmddnviPIVEQLQRRLasdypisqgqgeeednhpgvrnnfeTEAICSFLDARTReletdaypaLDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMADLYLSRKLavasspvsgsgaphwflnsptigskisrtisrgsmettqeenDVEELEMLLEAYFMQIDGTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLCSGTVCLSVYSLVAAIFGmnipytwktghgyVFKWVVVITGIVCALLFSIIIFYARHKGLVGS
mnrdglvvtavdqsslkkktavssswilldreaqsttldvdkhviMRRVQihardlrildpmlnYPSTILGREKVIVLNLEHIKAIITadevllrdpMDDNVIPIVEQLQRRLASDYPISQGqgeeednhpgvrnNFETEAICSFLDARTRELETDaypaldeltskissrnldrvrKLKSamtrltnrvqkvRDELEQLLDDDDDMADLYLSRKLAVasspvsgsgaphwflnsptigskISRTisrgsmettqeenDVEELEMLLEAYFMQIDGTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLCSGTVCLSVYSLVAAIFGMNIPYTWKTGHGYVFKWVVVITGIVCALLFSIIIFYARHKGLVGS
MNRDGLVVTAVDQSSLKKKTAVSSSWILLDREAQSTTLDVDKHVIMRRVQIHARDLRILDPMLNYPSTILGREKVIVLNLEHIKAIITADEVLLRDPMDDNVIPIVEQLQRRLASDYPISQGQGEEEDNHPGVRNNFETEAICSFLDARTRELETDAYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRdeleqlldddddmadlylSRKLavasspvsgsgapHWFLNSPTIGSKISRTISRGSMETTQEENDVEELEMLLEAYFMQIDGTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLCSGTVCLSVYSLVAAIFGMNIPYTWKTGHGYVFKWVVVITGIVCALLFSIIIFYARHKGLVGS
*********************VSSSWILLDREAQSTTLDVDKHVIMRRVQIHARDLRILDPMLNYPSTILGREKVIVLNLEHIKAIITADEVLLRDPMDDNVIPIVEQLQRR************************FETEAICSFLDARTREL****Y**************************************************DLYLSRKLA************HWFLN****************************LEMLLEAYFMQIDGTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLCSGTVCLSVYSLVAAIFGMNIPYTWKTGHGYVFKWVVVITGIVCALLFSIIIFYARHKGL***
*************************WILLDREAQSTTLDVDKHVIMRRVQIHARDLRILDPMLNYPSTILGREKVIVLNLEHIKAIITADEVLLRDPMDDNVIPIVEQLQRRLAS************DNHPGVRNNFETEAICSFLDARTRELETDAYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMADLYLSRKL***************************************EENDVEELEMLLEAYFMQIDGTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLCSGTVCLSVYSLVAAIFGMNIPYTWKTGHGYVFKWVVVITGIVCALLFSIIIFYARHKGLVG*
MNRDGLVVTAVDQSSLKKKTAVSSSWILLDREAQSTTLDVDKHVIMRRVQIHARDLRILDPMLNYPSTILGREKVIVLNLEHIKAIITADEVLLRDPMDDNVIPIVEQLQRRLASDYPI**********HPGVRNNFETEAICSFLDARTRELETDAYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMADLYLSRKLA*********GAPHWFLNSPTIGSKISRTIS************VEELEMLLEAYFMQIDGTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLCSGTVCLSVYSLVAAIFGMNIPYTWKTGHGYVFKWVVVITGIVCALLFSIIIFYARHKGLVGS
********TAVDQ*******AVSSSWILLDREAQSTTLDVDKHVIMRRVQIHARDLRILDPMLNYPSTILGREKVIVLNLEHIKAIITADEVLLRDPMDDNVIPIVEQLQRRLAS************DNHPGVRNNFETEAICSFLDARTRELETDAYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMADLYLSRKLAV***************************************NDVEELEMLLEAYFMQIDGTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLCSGTVCLSVYSLVAAIFGMNIPYTWKTGHGYVFKWVVVITGIVCALLFSIIIFYARHKGLV**
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MNRDGLVVTAVDQSSLKKKTAVSSSWILLDREAQSTTLDVDKHVIMRRVQIHARDLRILDPMLNYPSTILGREKVIVLNLEHIKAIITADEVLLRDPMDDNVIPIVEQLQRRLASDYPISQGQGEEEDNHPGVRNNFETEAICSFLDARTRELETDAYPALDELTSKISSRNLDRxxxxxxxxxxxxxxxxxxxxxxxxxxxxDDDMADLYLSRKLAVASSPVSGSGAPHWFLNSPTIGSKISRTISRGSMETTQEENDVEELEMLLEAYFMQIDGTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLCSGTVCLSVYSLVAAIFGMNIPYTWKTGHGYVFKWVVVITGIVCALLFSIIIFYARHKGLVGS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query376 2.2.26 [Sep-21-2011]
Q10D38384 Magnesium transporter MRS yes no 0.944 0.924 0.756 1e-141
B8AJT9381 Magnesium transporter MRS N/A no 0.944 0.931 0.756 1e-141
Q304A0386 Magnesium transporter MRS yes no 0.994 0.968 0.685 1e-136
Q9FLG2394 Magnesium transporter MRS no no 0.994 0.949 0.699 1e-132
P0CZ21380 Magnesium transporter MRS no no 0.954 0.944 0.601 1e-116
Q9LXD4387 Putative magnesium transp no no 0.952 0.925 0.531 4e-96
Q67UQ7436 Magnesium transporter MRS no no 0.946 0.816 0.466 5e-88
A2YFN7436 Magnesium transporter MRS N/A no 0.946 0.816 0.466 5e-88
Q9S9N4442 Magnesium transporter MRS no no 0.960 0.816 0.443 5e-87
Q9SAH0443 Magnesium transporter MRS no no 0.968 0.821 0.448 5e-85
>sp|Q10D38|MRS2I_ORYSJ Magnesium transporter MRS2-I OS=Oryza sativa subsp. japonica GN=MRS2-I PE=2 SV=1 Back     alignment and function desciption
 Score =  502 bits (1293), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 277/366 (75%), Positives = 299/366 (81%), Gaps = 11/366 (3%)

Query: 18  KKTAVSSSWILLDREAQSTTLDVDKHVIMRRVQIHARDLRILDPMLNYPSTILGREKVIV 77
           KK   S SWIL D   +   LD DK+ IM RV I+ARDLRILDP+L+YPSTILGRE+ IV
Sbjct: 23  KKRGASRSWILFDAAGEERVLDADKYAIMHRVDINARDLRILDPLLSYPSTILGRERAIV 82

Query: 78  LNLEHIKAIITADEVLLRDPMDDNVIPIVEQLQRRLASDYPISQGQ----GEEEDNHPGV 133
           LNLEHIKAIITA+EVLLRDP+DDNVIP+VE+L+RRLA   P S  Q    G EED  P  
Sbjct: 83  LNLEHIKAIITAEEVLLRDPLDDNVIPVVEELRRRLA---PSSATQHDVEGAEEDESPFE 139

Query: 134 RNNFET--EAICSFLDARTRELETDAYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQ 191
               E   EAICSFL ART ELE+ AYPALDELTSKISSRNLDRVRKLKS MTRL  RVQ
Sbjct: 140 FRALEVTLEAICSFLGARTTELESAAYPALDELTSKISSRNLDRVRKLKSGMTRLNARVQ 199

Query: 192 KVRDELEQLLDDDDDMADLYLSRKLAVASSPVSGSGAPHWFLNSPTIGSKISRTISRGSM 251
           KVRDELEQLLDDDDDMADLYLSRKLA A+SPVSGSG P+WF  SPTIGSKISR  SR S 
Sbjct: 200 KVRDELEQLLDDDDDMADLYLSRKLAGAASPVSGSGGPNWFPASPTIGSKISRA-SRASA 258

Query: 252 ETTQ-EENDVEELEMLLEAYFMQIDGTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLE 310
            T    ENDVEELEMLLEAYFMQIDGTLNKL+TLREYIDDTEDYINIQLDNHRNQLIQLE
Sbjct: 259 PTIHGNENDVEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLE 318

Query: 311 LFLCSGTVCLSVYSLVAAIFGMNIPYTWKTGHGYVFKWVVVITGIVCALLFSIIIFYARH 370
           LFL SGTVCLS+YSLVA IFGMNIPYTW   HGYVFKWVV+++G+ CA +F  I+ YARH
Sbjct: 319 LFLSSGTVCLSLYSLVAGIFGMNIPYTWNDNHGYVFKWVVLVSGLFCAFMFVSIVAYARH 378

Query: 371 KGLVGS 376
           KGLVGS
Sbjct: 379 KGLVGS 384




Magnesium transporter that may mediate the influx of magnesium.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|B8AJT9|MRS2I_ORYSI Magnesium transporter MRS2-I OS=Oryza sativa subsp. indica GN=MRS2-I PE=3 SV=1 Back     alignment and function description
>sp|Q304A0|MRS27_ARATH Magnesium transporter MRS2-7 OS=Arabidopsis thaliana GN=MRS2-7 PE=2 SV=1 Back     alignment and function description
>sp|Q9FLG2|MRS22_ARATH Magnesium transporter MRS2-2 OS=Arabidopsis thaliana GN=MRS2-2 PE=2 SV=1 Back     alignment and function description
>sp|P0CZ21|MRS28_ARATH Magnesium transporter MRS2-8 OS=Arabidopsis thaliana GN=MRS2-8 PE=2 SV=1 Back     alignment and function description
>sp|Q9LXD4|MRS29_ARATH Putative magnesium transporter MRS2-9 OS=Arabidopsis thaliana GN=MRS2-9 PE=5 SV=2 Back     alignment and function description
>sp|Q67UQ7|MRS2B_ORYSJ Magnesium transporter MRS2-B OS=Oryza sativa subsp. japonica GN=MRS2-B PE=2 SV=1 Back     alignment and function description
>sp|A2YFN7|MRS2B_ORYSI Magnesium transporter MRS2-B OS=Oryza sativa subsp. indica GN=MRS2-B PE=3 SV=1 Back     alignment and function description
>sp|Q9S9N4|MRS21_ARATH Magnesium transporter MRS2-1 OS=Arabidopsis thaliana GN=MRS2-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SAH0|MRS2A_ARATH Magnesium transporter MRS2-10 OS=Arabidopsis thaliana GN=MRS2-10 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query376
255559943392 RNA splicing protein mrs2, mitochondrial 0.994 0.954 0.779 1e-158
225437239389 PREDICTED: magnesium transporter MRS2-I- 0.989 0.956 0.776 1e-150
225432906389 PREDICTED: magnesium transporter MRS2-I 0.994 0.961 0.744 1e-148
224099887394 magnesium transporter [Populus trichocar 0.994 0.949 0.722 1e-144
226510550384 LOC100283487 [Zea mays] gi|195635131|gb| 0.984 0.963 0.729 1e-143
223974765384 unknown [Zea mays] gi|414872715|tpg|DAA5 0.984 0.963 0.727 1e-142
356572243388 PREDICTED: magnesium transporter MRS2-I- 0.978 0.948 0.744 1e-140
242033009387 hypothetical protein SORBIDRAFT_01g00850 0.938 0.912 0.755 1e-140
224111064398 magnesium transporter [Populus trichocar 0.997 0.942 0.714 1e-140
296439674381 RecName: Full=Magnesium transporter MRS2 0.944 0.931 0.756 1e-139
>gi|255559943|ref|XP_002520990.1| RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis] gi|223539827|gb|EEF41407.1| RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 307/394 (77%), Positives = 336/394 (85%), Gaps = 20/394 (5%)

Query: 1   MNRDGLVVTAVDQSSLKKKTAVSSSWILLDREAQSTTLDVDKHVIMRRVQIHARDLRILD 60
           M RD  VV A  Q+SLKKKTAVS SWILLD   QS+ LDVDK+ IMRRVQIHARDLRILD
Sbjct: 1   MERDIAVVPAEPQASLKKKTAVSRSWILLDSNGQSSILDVDKYAIMRRVQIHARDLRILD 60

Query: 61  PMLNYPSTILGREKVIVLNLEHIKAIITADEVLLRDPMDDNVIPIVEQLQRRLASDYPIS 120
           P+L+YPSTILGRE+VIVLNLEHIKAIITA+EVLLRDP+DDNVIPIVE+LQRRL   Y  +
Sbjct: 61  PLLSYPSTILGRERVIVLNLEHIKAIITAEEVLLRDPLDDNVIPIVEELQRRLPLVYVTA 120

Query: 121 QGQGEEEDNHPGVRNNFET-----------------EAICSFLDARTRELETDAYPALDE 163
                EE+ HPGVR + +T                 EAICSFLDARTRELETDAYPALDE
Sbjct: 121 TQVQVEEEEHPGVRKDVDTDQENEFPFEFRALEVALEAICSFLDARTRELETDAYPALDE 180

Query: 164 LTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMADLYLSRKLAVASSPV 223
           LTSKISS NLDRVRKLKS+MTRLTNRVQK+RDELEQLLDDDDDMADLYLSRKLA +SSP+
Sbjct: 181 LTSKISSLNLDRVRKLKSSMTRLTNRVQKIRDELEQLLDDDDDMADLYLSRKLA-SSSPI 239

Query: 224 SGSGAP-HWFLNSPTIGSKISRTISRGSMETTQEENDVEELEMLLEAYFMQIDGTLNKLS 282
           S  GAP +WFL+SPTIGSKISRT SR S+ T Q E+DVEELEMLLEAYFMQIDGTLNKL+
Sbjct: 240 SSYGAPPNWFLSSPTIGSKISRT-SRASVTTMQGEHDVEELEMLLEAYFMQIDGTLNKLA 298

Query: 283 TLREYIDDTEDYINIQLDNHRNQLIQLELFLCSGTVCLSVYSLVAAIFGMNIPYTWKTGH 342
           TLREYIDDTEDYINIQLDNHRNQLIQLELFLCSGTVCLSVYSLVAAIFGMN+ YTW+ GH
Sbjct: 299 TLREYIDDTEDYINIQLDNHRNQLIQLELFLCSGTVCLSVYSLVAAIFGMNLQYTWREGH 358

Query: 343 GYVFKWVVVITGIVCALLFSIIIFYARHKGLVGS 376
           GYVFKWVV++T ++CA LF+ II YARHKGLVGS
Sbjct: 359 GYVFKWVVILTSLICATLFASIISYARHKGLVGS 392




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437239|ref|XP_002282145.1| PREDICTED: magnesium transporter MRS2-I-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225432906|ref|XP_002284181.1| PREDICTED: magnesium transporter MRS2-I isoform 1 [Vitis vinifera] gi|297737159|emb|CBI26360.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224099887|ref|XP_002311660.1| magnesium transporter [Populus trichocarpa] gi|222851480|gb|EEE89027.1| magnesium transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|226510550|ref|NP_001149859.1| LOC100283487 [Zea mays] gi|195635131|gb|ACG37034.1| metal ion transporter [Zea mays] Back     alignment and taxonomy information
>gi|223974765|gb|ACN31570.1| unknown [Zea mays] gi|414872715|tpg|DAA51272.1| TPA: metal ion transporter [Zea mays] Back     alignment and taxonomy information
>gi|356572243|ref|XP_003554279.1| PREDICTED: magnesium transporter MRS2-I-like [Glycine max] Back     alignment and taxonomy information
>gi|242033009|ref|XP_002463899.1| hypothetical protein SORBIDRAFT_01g008500 [Sorghum bicolor] gi|241917753|gb|EER90897.1| hypothetical protein SORBIDRAFT_01g008500 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|224111064|ref|XP_002315734.1| magnesium transporter [Populus trichocarpa] gi|222864774|gb|EEF01905.1| magnesium transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296439674|sp|B8AJT9.1|MRS2I_ORYSI RecName: Full=Magnesium transporter MRS2-I gi|218193730|gb|EEC76157.1| hypothetical protein OsI_13458 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query376
TAIR|locus:2174799394 MGT9 "magnesium transporter 9" 0.680 0.649 0.665 1.2e-81
TAIR|locus:2077665436 MGT6 "magnesium transporter 6" 0.627 0.541 0.450 2.6e-67
TAIR|locus:2091176484 MGT4 "magnesium transporter 4" 0.303 0.235 0.508 8.9e-66
TAIR|locus:2044254421 MGT3 "magnesium transporter 3" 0.465 0.415 0.434 6.9e-61
TAIR|locus:2144746294 AT5G09720 [Arabidopsis thalian 0.680 0.870 0.531 1.4e-57
TAIR|locus:2200542442 MGT2 "magnesium transporter 2" 0.375 0.319 0.442 1.1e-56
TAIR|locus:2025767443 MGT1 "magnesium transporter 1" 0.375 0.318 0.452 4.8e-56
TAIR|locus:2139905408 MGT5 "AT4G28580" [Arabidopsis 0.917 0.845 0.352 1.1e-46
UNIPROTKB|F1P344379 MRS2 "Uncharacterized protein" 0.305 0.303 0.373 2.5e-16
RGD|708529434 Mrs2 "MRS2 magnesium homeostas 0.244 0.211 0.427 4.6e-15
TAIR|locus:2174799 MGT9 "magnesium transporter 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
 Identities = 173/260 (66%), Positives = 190/260 (73%)

Query:   120 SQGQGEEEDNHPGVRNNFET--EAICSFLDARTRELETDAYPALDELTSKISSRNLDRVR 177
             + G   +ED  P      E   EAICSFL ART ELET AYPALDELTSKISSRNLDRVR
Sbjct:   136 NDGDTGDEDESPFEFRALEVALEAICSFLAARTAELETAAYPALDELTSKISSRNLDRVR 195

Query:   178 KLKSAMTRLTNRVQKVRXXXXXXXXXXXXXXXXXXSRKLXXXXXXXXXXXXXHWFLNSPT 237
             KLKSAMTRLT RVQKVR                  SRKL             +W+  SPT
Sbjct:   196 KLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKLSSASSPISSIGEPNWYTTSPT 255

Query:   238 IGSKISRTISRGSMETTQ-EENDVEELEMLLEAYFMQIDGTLNKLSTLREYIDDTEDYIN 296
             IGSKISR  SR S+ T   +ENDVEELEMLLEAYFMQID TLN+L+TLREYIDDTEDYIN
Sbjct:   256 IGSKISRA-SRASLATVHGDENDVEELEMLLEAYFMQIDSTLNRLTTLREYIDDTEDYIN 314

Query:   297 IQLDNHRNQLIQLELFLCSGTVCLSVYSLVAAIFGMNIPYTWKTGHGYVFKWVVVITGIV 356
             IQLDNHRNQLIQLEL L SGTVCLS+YSLVA IFGMNIPYTW  GHGY+FK+VV +TG +
Sbjct:   315 IQLDNHRNQLIQLELVLSSGTVCLSMYSLVAGIFGMNIPYTWNDGHGYMFKYVVGLTGTL 374

Query:   357 CALLFSIIIFYARHKGLVGS 376
             C ++F II+ YAR+KGLVGS
Sbjct:   375 CVVVFVIIMSYARYKGLVGS 394


GO:0005634 "nucleus" evidence=ISM
GO:0016020 "membrane" evidence=IEA;ISS
GO:0030001 "metal ion transport" evidence=IEA;ISS
GO:0046873 "metal ion transmembrane transporter activity" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IDA
TAIR|locus:2077665 MGT6 "magnesium transporter 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091176 MGT4 "magnesium transporter 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044254 MGT3 "magnesium transporter 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144746 AT5G09720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200542 MGT2 "magnesium transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025767 MGT1 "magnesium transporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139905 MGT5 "AT4G28580" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1P344 MRS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|708529 Mrs2 "MRS2 magnesium homeostasis factor homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B8AJT9MRS2I_ORYSINo assigned EC number0.75680.94410.9317N/Ano
Q304A0MRS27_ARATHNo assigned EC number0.68550.99460.9689yesno
Q10D38MRS2I_ORYSJNo assigned EC number0.75680.94410.9244yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
cd12823323 cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae 1e-115
pfam01544291 pfam01544, CorA, CorA-like Mg2+ transporter protei 2e-04
cd12821285 cd12821, EcCorA_ZntB-like, Escherichia coli CorA-S 0.001
>gnl|CDD|213357 cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae inner mitochondrial membrane Mg2+ transporters Mfm1p and Mrs2p-like family Back     alignment and domain information
 Score =  336 bits (864), Expect = e-115
 Identities = 159/359 (44%), Positives = 216/359 (60%), Gaps = 47/359 (13%)

Query: 26  WILLDREAQSTTLDVDKHVIMRRVQIHARDLRILDPML-NYPSTILGREKVIVLNLEHIK 84
           W ++D    +T +++DK  ++R + +  RDLR+LDP L +YP +IL RE  I++NLEHI+
Sbjct: 1   WTVIDSTGNATVVELDKSELLRELGLQPRDLRLLDPTLTSYPPSILVRENAILVNLEHIR 60

Query: 85  AIITADEVLLRDP---MDDNVIPIVEQLQRRLASDYPISQGQGEEEDNHPGVRNNFETEA 141
           AIITADEVLL DP       V   +E+LQRRLAS    S+ +   ED+ P     FE  A
Sbjct: 61  AIITADEVLLFDPDGSSSALVSAFLEELQRRLAS-SNGSESESGGEDSLP-----FEFRA 114

Query: 142 -------ICSFLDARTRELETDAYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVR 194
                  +CS L+A  + LE +A P LDELT KIS+ NL+R+  LK  +  L  RVQKVR
Sbjct: 115 LEAALEEVCSHLEAELKRLEPEALPLLDELTDKISTSNLERLLPLKRRLVELETRVQKVR 174

Query: 195 DELEQLLDDDDDMADLYLSRKLAVASSPVSGSGAPHWFLNSPTIGSKISRTISRGSMETT 254
           D LE+LLDDD+DMAD+YL+ K A         G                        E++
Sbjct: 175 DALEELLDDDEDMADMYLTDKAA---------GPERL--------------------ESS 205

Query: 255 QEENDVEELEMLLEAYFMQIDGTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLC 314
           ++E+D EE+EMLLEAY  Q+D  LNKL  LREYIDDTE+ IN+ LD+ RNQL++LEL L 
Sbjct: 206 RKEDDHEEVEMLLEAYLQQVDELLNKLEELREYIDDTEELINLILDSRRNQLMRLELKLS 265

Query: 315 SGTVCLSVYSLVAAIFGMNIPYTWKTGHGYVFKWVVVITGIVCALLFSIIIFYARHKGL 373
            GT+ L+V +LVA +FGMN+P   +    Y F  V   + +   L+F +++ Y R K L
Sbjct: 266 IGTLSLAVGTLVAGLFGMNLPSGLEE-SPYAFWIVTGGSVVGSILIFIVVLRYLRRKRL 323


A eukaryotic subfamily belonging to the Escherichia coli CorA-Salmonella typhimurium ZntB_like family (EcCorA_ZntB-like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This functionally diverse subfamily includes the inner mitochondrial membrane Mg2+ transporters Saccharomyces cerevisiae Mfm1p/Lpe10p, Mrs2p, and human MRS2/ MRS2L. It also includes a family of Arabidopsis thaliana proteins (AtMGTs) some of which are localized to distinct tissues, and not all of which can transport Mg2+. Structures of the intracellular domain of two EcCorA_ZntB-like family transporters: Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, as in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport. Length = 323

>gnl|CDD|216560 pfam01544, CorA, CorA-like Mg2+ transporter protein Back     alignment and domain information
>gnl|CDD|213355 cd12821, EcCorA_ZntB-like, Escherichia coli CorA-Salmonella typhimurium ZntB_like family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 376
KOG2662414 consensus Magnesium transporters: CorA family [Ino 100.0
COG0598322 CorA Mg2+ and Co2+ transporters [Inorganic ion tra 100.0
TIGR00383318 corA magnesium Mg(2+) and cobalt Co(2+) transport 100.0
PRK09546324 zntB zinc transporter; Reviewed 100.0
PRK11085316 magnesium/nickel/cobalt transporter CorA; Provisio 99.96
PF01544292 CorA: CorA-like Mg2+ transporter protein; InterPro 99.95
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism] Back     alignment and domain information
Probab=100.00  E-value=3.2e-79  Score=590.38  Aligned_cols=355  Identities=61%  Similarity=0.865  Sum_probs=317.6

Q ss_pred             cCccchhhhcccccceeEEEeccCCcccccchhhHHhhhhhcccccccccccCCCCCcccccccceEEeecchhhhhhcc
Q 045110           10 AVDQSSLKKKTAVSSSWILLDREAQSTTLDVDKHVIMRRVQIHARDLRILDPMLNYPSTILGREKVIVLNLEHIKAIITA   89 (376)
Q Consensus        10 ~~~~~~~~~~~~~~~~w~~id~~g~~~~~~~~k~~l~~~~~L~~RDlr~ld~~~~~~~~I~~R~~~Ilvnle~i~~II~~   89 (376)
                      +.+.++.++++.++++|++||.+|+++..+++|+.|+++.||+|||||++||+++|+++|+.||+|||+|+|||||||++
T Consensus        51 ~~~~~~~~~~~~~~~sw~~~D~tGn~~~~e~dK~~i~~r~~L~aRDLR~ldp~~~~~ssIl~RE~aIVlNLe~IKAIIta  130 (414)
T KOG2662|consen   51 IDSSSVSKKSGSGSRSWTRFDATGNSTVLEVDKYTIMKRVGLPARDLRKLDPSLSYPSSILGRENAIVLNLEHIKAIITA  130 (414)
T ss_pred             ccCcccccccCCcceEEEEEcCCCCeeeccccHHHHHHHcCCChhhhhhccccccCccccccccceEEeehhhhheeeeh
Confidence            34555888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCcchhHHHHHhhhcCCCCCc--cCCCCcccCCCCccCcch-------hhhhhhhhhhhccccccccccc
Q 045110           90 DEVLLRDPMDDNVIPIVEQLQRRLASDYPIS--QGQGEEEDNHPGVRNNFE-------TEAICSFLDARTRELETDAYPA  160 (376)
Q Consensus        90 d~vl~f~~~~~~~~~f~~~L~~rL~~~~~~~--~~~~~~~~~~~~~~LpfE-------Leav~~~l~~~~~~Le~~~~~~  160 (376)
                      |+|++|++.++ +.++.+++++|+...+...  |.++++.   ..+.+|||       |+++|+.|++++.+||..++++
T Consensus       131 eeVll~d~~~~-v~~~~~el~~~l~~~~~~~~~q~s~~~~---~~~~lPFEFrALE~aLe~~~s~L~~~~~~Le~~~~~~  206 (414)
T KOG2662|consen  131 DEVLLLDSLDP-VIPYNEELQRRLPVELESRGNQLSSDGG---SKDELPFEFRALEVALEAACSFLDSRLSELETEAYPL  206 (414)
T ss_pred             hheeEeccccc-cchHHHHHHHHhcccccccccccCCCCC---CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999877 8899999999998765421  1111111   23799999       6678999999999999999999


Q ss_pred             hHHHhhhhcccchhHHHhhHHHHHHHHHHHHHHHHHHHhhcCCCcchhhhHHhhhhccccCCCCCCCCCcccccCCCccc
Q 045110          161 LDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMADLYLSRKLAVASSPVSGSGAPHWFLNSPTIGS  240 (376)
Q Consensus       161 ld~L~~~~~~~~L~~l~~lK~~L~~l~~~v~~vre~l~~lL~dd~dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (376)
                      ||+|+.++++.+|++|+.+|++|++|.++|+++||+|++|||||+||++||||+|+.+.++       +.|.|..|+..+
T Consensus       207 LdeLt~~is~~nL~~lr~~k~~Lt~l~~rvqkvRDeLe~LLddd~Dma~mYLT~K~~~~~~-------~~~~~~sp~~~~  279 (414)
T KOG2662|consen  207 LDELTNKISTLNLERLRILKKRLTELTSRVQKVRDELEELLDDDDDMAEMYLTRKLAQASS-------PESAPTSPTIKA  279 (414)
T ss_pred             HHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhHHhhhccc-------cccCCCCccccC
Confidence            9999999999999999999999999999999999999999999999999999999876653       456666677766


Q ss_pred             ccccccccccceeecCcCCHHHHHHHHHHHHhhhcccchhhhhhhhhhcCcccceeeeccccccceeEEEEEeeccceeh
Q 045110          241 KISRTISRGSMETTQEENDVEELEMLLEAYFMQIDGTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLCSGTVCL  320 (376)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~eelE~LLE~y~~~~~~~~~~~~~l~~~i~~~~~~~~~~l~~~~N~~m~~~l~Lti~t~i~  320 (376)
                      ..+++++....+....++++||+|||||+||+|+|++.+++++++++|++|||+++++||++||++|+++++||+.|+++
T Consensus       280 ~~~r~~~~~~~s~~~~~dd~eElEMLLEaYf~qiD~~~nk~~~Lre~IddTEd~InI~LDs~RN~LiqleL~Lt~gT~~~  359 (414)
T KOG2662|consen  280 GISRAKSNRASSTVRGEDDVEELEMLLEAYFMQIDSTLNKLESLREYIDDTEDIINIQLDSNRNELIQLELLLTIGTFCL  359 (414)
T ss_pred             CccchhhcccchhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence            66654322222222238899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhccCcceeeecCCceEEEEeeeehhHHHHHHHHHHHHHhhhccCCCC
Q 045110          321 SVYSLVAAIFGMNIPYTWKTGHGYVFKWVVVITGIVCALLFSIIIFYARHKGLVGS  376 (376)
Q Consensus       321 ~~~t~IaGifGMN~~~~pe~~~~~gf~~v~~~~~~~~~~i~~~~~~~fkrk~wl~~  376 (376)
                      +.+++|||+||||+++.+|+ .+|+|+||++++.++|+++|++.++|+|+||.++.
T Consensus       360 s~~~~va~ifGMNl~~~l~~-~~~~F~~vv~~~~~~~~~lf~~i~~~~k~krL~~~  414 (414)
T KOG2662|consen  360 SVFSVVAGIFGMNLPSSLEE-DHYAFKWVVGITFTLCIVLFVVILGYAKLKRLLGL  414 (414)
T ss_pred             HHHHHHHHHhcCCccchhcc-CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            99999999999999999998 78999999999999999999999999999998763



>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA) Back     alignment and domain information
>PRK09546 zntB zinc transporter; Reviewed Back     alignment and domain information
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional Back     alignment and domain information
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
3rkg_A261 Magnesium transporter MRS2, mitochondrial; matrix 2e-65
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae} Length = 261 Back     alignment and structure
 Score =  208 bits (529), Expect = 2e-65
 Identities = 62/298 (20%), Positives = 121/298 (40%), Gaps = 48/298 (16%)

Query: 14  SSLKKKTAVSSSWILLDR--EAQSTTLDVDKHVIMRRVQIHARDLRILD-PMLNYPSTIL 70
             +    ++  S  + +      S +    K   +    +  RDLR +D   ++   TI+
Sbjct: 7   KPISASDSLFISCTVFNSKGNIISMSEKFPKWSFLTEHSLFPRDLRKIDNSSIDIIPTIM 66

Query: 71  GREKVIVLNLEHIKAIITADEVLLRDPMDDNVIPIVEQLQRRLASDYPISQGQGEEEDNH 130
            +   IV+NL HIKA+I  D+V + D  + +    +  L   L S    ++   +  ++ 
Sbjct: 67  CKPNCIVINLLHIKALIERDKVYVFDTTNPSAAAKLSVLMYDLESKLSSTKNNSQFYEHR 126

Query: 131 PGVRNNFET--EAICSFLDARTRELETDAYPALDELTSKISSRNLDRVRKLKSAMTRLTN 188
                  E+    + S L+   +         L++L ++++   L  +      +T    
Sbjct: 127 A-----LESIFINVMSALETDFKLHSQICIQILNDLENEVNRLKLRHLLIKSKDLTLFYQ 181

Query: 189 RVQKVRDELEQLLDDDDDMADLYLSRKLAVASSPVSGSGAPHWFLNSPTIGSKISRTISR 248
           +   +RD L++LL++DDD+A++YL                                    
Sbjct: 182 KTLLIRDLLDELLENDDDLANMYL------------------------------------ 205

Query: 249 GSMETTQEENDVEELEMLLEAYFMQIDGTLNKLSTLREYIDDTEDYINIQLDNHRNQL 306
                   +++  +LEML+E Y+ Q D  + +  +L + I  TE+ +NI LD +RN L
Sbjct: 206 --TVKKSPKDNFSDLEMLIETYYTQCDEYVQQSESLIQDIKSTEEIVNIILDANRNSL 261


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query376
3rkg_A261 Magnesium transporter MRS2, mitochondrial; matrix 100.0
2iub_A363 CORA, divalent cation transport-related protein; m 100.0
4ev6_A339 Magnesium transport protein CORA; membrane protein 100.0
4egw_A280 Magnesium transport protein CORA; magnesium transp 99.69
3nvo_A264 Zinc transport protein ZNTB; alpha-beta-alpha sand 99.52
3ck6_A252 Putative membrane transport protein; APC91421.1, Z 99.46
2bbh_A269 Divalent cation transport-related protein; transpo 99.35
2hn1_A266 CORA, magnesium and cobalt transporter; integral m 99.32
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=1.6e-51  Score=386.56  Aligned_cols=235  Identities=27%  Similarity=0.426  Sum_probs=213.7

Q ss_pred             ccccceeEEEeccCCccccc--chhhHHhhhhhcccccccccccCC-CCCcccccccceEEeecchhhhhhccccccccC
Q 045110           20 TAVSSSWILLDREAQSTTLD--VDKHVIMRRVQIHARDLRILDPML-NYPSTILGREKVIVLNLEHIKAIITADEVLLRD   96 (376)
Q Consensus        20 ~~~~~~w~~id~~g~~~~~~--~~k~~l~~~~~L~~RDlr~ld~~~-~~~~~I~~R~~~Ilvnle~i~~II~~d~vl~f~   96 (376)
                      +....+|++||..|+++.++  ++|++|++++||+|||||+|||.+ +++|+|++|++|||||++||||||++|+|++|+
T Consensus        13 ~~~~~~ct~fD~~G~~~~~~~~~~K~~l~~~~~L~~RDLR~ld~~~~~~~PsIl~R~~aIlvnL~~irAII~~d~Vllfd   92 (261)
T 3rkg_A           13 DSLFISCTVFNSKGNIISMSEKFPKWSFLTEHSLFPRDLRKIDNSSIDIIPTIMCKPNCIVINLLHIKALIERDKVYVFD   92 (261)
T ss_dssp             GGGEEEEEEECTTSCEEEEEEEEEHHHHHHHTTCCGGGGGGTSSCCSSCCCEEEECSSCEEEEETTEEEEECSSCEEEEC
T ss_pred             CCceEEEEEECCCCCEEEecccccHHHHHHHcCCChhhHHHhcccccCCCceEEecCCeEEEechhceEEEEcceEEEEc
Confidence            33478999999999999986  999999999999999999999985 688899999999999999999999999999999


Q ss_pred             CCCCCcc----hhHHHHHhhhcCCCCCccCCCCcccCCCCccCcch---hh----hhhhhhhhhccccccccccchHHHh
Q 045110           97 PMDDNVI----PIVEQLQRRLASDYPISQGQGEEEDNHPGVRNNFE---TE----AICSFLDARTRELETDAYPALDELT  165 (376)
Q Consensus        97 ~~~~~~~----~f~~~L~~rL~~~~~~~~~~~~~~~~~~~~~LpfE---Le----av~~~l~~~~~~Le~~~~~~ld~L~  165 (376)
                      +.++.+.    .|+.+++.|+..+.              .+.+|||   ||    ++|+.|++++..+|..+.++|++|.
T Consensus        93 ~~~~~~~~~~~~f~~~l~~~l~~~~--------------~~~lPFEfraLEa~L~~v~~~Le~e~~~l~~~~~~~L~~L~  158 (261)
T 3rkg_A           93 TTNPSAAAKLSVLMYDLESKLSSTK--------------NNSQFYEHRALESIFINVMSALETDFKLHSQICIQILNDLE  158 (261)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHCSS--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCchhhhhHHHHHHHHHHHhccCC--------------CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8875443    48899999997642              2589999   55    4689999999999999999999999


Q ss_pred             hhhcccchhHHHhhHHHHHHHHHHHHHHHHHHHhhcCCCcchhhhHHhhhhccccCCCCCCCCCcccccCCCcccccccc
Q 045110          166 SKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMADLYLSRKLAVASSPVSGSGAPHWFLNSPTIGSKISRT  245 (376)
Q Consensus       166 ~~~~~~~L~~l~~lK~~L~~l~~~v~~vre~l~~lL~dd~dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (376)
                      +++++..|++|+..|++|+.+.++++.+|++|+++|++|+||+.||||++..                            
T Consensus       159 ~~i~~~~L~~Ll~~~k~L~~~~~kv~~vr~~leelLddDeDm~~myLT~k~~----------------------------  210 (261)
T 3rkg_A          159 NEVNRLKLRHLLIKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKKS----------------------------  210 (261)
T ss_dssp             HSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHTCCSSCCC----------------------------
T ss_pred             hcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhhccCCCC----------------------------
Confidence            9999999999999999999999999999999999999999999999999742                            


Q ss_pred             cccccceeecCcCCHHHHHHHHHHHHhhhcccchhhhhhhhhhcCcccceeeeccccccce
Q 045110          246 ISRGSMETTQEENDVEELEMLLEAYFMQIDGTLNKLSTLREYIDDTEDYINIQLDNHRNQL  306 (376)
Q Consensus       246 ~~~~~~~~~~~~~~~eelE~LLE~y~~~~~~~~~~~~~l~~~i~~~~~~~~~~l~~~~N~~  306 (376)
                                ..++|+|+|||||+||+|+|+++++++.++++|++|||++++.||++||++
T Consensus       211 ----------~~~d~eElEmLLE~Y~~q~d~~~~~~~~L~~~I~~TEe~i~i~LD~~RN~L  261 (261)
T 3rkg_A          211 ----------PKDNFSDLEMLIETYYTQCDEYVQQSESLIQDIKSTEEIVNIILDANRNSL  261 (261)
T ss_dssp             ----------TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred             ----------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence                      256889999999999999999999999999999999999999999999985



>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A Back     alignment and structure
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii} Back     alignment and structure
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii} Back     alignment and structure
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A Back     alignment and structure
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A* Back     alignment and structure
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1 Back     alignment and structure
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 376
d2iuba264 f.17.3.1 (A:286-349) Magnesium transport protein C 9e-05
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]} Length = 64 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: Magnesium transport protein CorA, transmembrane region
family: Magnesium transport protein CorA, transmembrane region
domain: Magnesium transport protein CorA
species: Thermotoga maritima [TaxId: 2336]
 Score = 38.1 bits (89), Expect = 9e-05
 Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 317 TVCLSVYSLVAAIFGMNIPYTWKTGHGYVFKWVVVITGIVCALLFSIIIFYARHK 371
                  + +A I+GMN  Y  +    + +  V+ + G++  ++      Y + K
Sbjct: 13  ATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVIMV----VYFKKK 63


Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query376
d2iuba264 Magnesium transport protein CorA {Thermotoga marit 99.69
d2bbha1232 Magnesium transport protein CorA, soluble domain { 99.52
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: Magnesium transport protein CorA, transmembrane region
family: Magnesium transport protein CorA, transmembrane region
domain: Magnesium transport protein CorA
species: Thermotoga maritima [TaxId: 2336]
Probab=99.69  E-value=7.5e-20  Score=134.48  Aligned_cols=64  Identities=20%  Similarity=0.382  Sum_probs=42.6

Q ss_pred             cccceeEEEEEeeccceehhHHHHHHHHhccCcceeeecCCceEEEEeeeehhHHHHHHHHHHHHHhhhcc
Q 045110          302 HRNQLIQLELFLCSGTVCLSVYSLVAAIFGMNIPYTWKTGHGYVFKWVVVITGIVCALLFSIIIFYARHKG  372 (376)
Q Consensus       302 ~~N~~m~~~l~Lti~t~i~~~~t~IaGifGMN~~~~pe~~~~~gf~~v~~~~~~~~~~i~~~~~~~fkrk~  372 (376)
                      |+|++||   +||++|++|.|+|+|||+||||++++|+.+++|||+++++    +++++.+++++||||||
T Consensus         1 r~N~~mk---~lT~it~iflP~t~i~gifGMN~~~~P~~~~~~~~~~~~~----~~~~~~~~~~~~f~rkk   64 (64)
T d2iuba2           1 KTNEVMK---VLTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLA----VMGVIAVIMVVYFKKKK   64 (64)
T ss_dssp             HHHHHHH---HHHHHHHHHHHHHHHTTSCC--------------CHHHHH----HHHHHHHHHHTTTTSCC
T ss_pred             ChhHHHH---HHHHHHHHHHHHHHHHhhhccCCCCCCCCCccHHHHHHHH----HHHHHHHHHHHHHhccC
Confidence            5799999   6999999999999999999999999999999999987776    33455567889999987



>d2bbha1 d.328.1.1 (A:13-244) Magnesium transport protein CorA, soluble domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure