Citrus Sinensis ID: 045117

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
IQQAKVLTRYLKALFKSLLRELLCHLTMKNLFFSMVFMVSLIFFLANVSEAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSLGVQDRFLSKIPSACGIKVGFPVSTATNCETIH
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccccccHHHHHcccccHHHHccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHcccccccHHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccHHHHHHcHHHHHHHcccccccccHHcHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHcccccccccEcEEccccccccccc
Coil and Loop (DISEMBL)
IQQAKVLTRYLKALFKSLLRELLCHLTMKNLFFSMVFMVSLIFFLANVSEAAIACGTVDAKAAACVgfatgkaptptsaccsGLQQLAQSVKTVDDKKAICRCLKAGAKSLGVQdrflskipsacgikvgfpvstatncetih
Flexible Loop (DISEMBL)
IQQAKVLTRYLKALFKSLLRELLCHLTMKNLFFSMVFMVSLIFFLANVSEAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAgakslgvqdRFLSKIpsacgikvgfpvstatncetih
Low Complexity Region (SEG)
IQQAKVLTRYLKALFKSLLRELLCHLTMKNLFFSMVFMVSLIFFLANVSEAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSLGVQDRFLSKIPSACGIKVGFPVSTATNCETIH
Disordered region (IsUnstruct)
*****VLTRYLKALFKSLLRELLCHLTMKNLFFSMVFMVSLIFFLANVSEAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSLGVQDRFLSKIPSACGIKVGFPVSTAT******
Disordered Region (DISOPRED)
*********YLKALFK**L******LTMKNLFFSMVFMVSLIFFLANVSEAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSLGVQDRFLSKIPSACGIKVGFPVSTATNCETI*
Disordered Region (DISEMBL)
IQQAKVLTRYLKALFKSLLRELLCHLTMKNLFFSMVFMVSLIFFLANVSEAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSLGVQDRFLSKIPSACGIKVGFPVSTATNCETIH
Disordered Region (DISPRO)
IQQAKVLTRYLKALFKSLLRELLCHLTMKNLFFSMVFMVSLIFFLANVSEAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSLGVQDRFLSKIPSACGIKVGFPVSTATNC****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
IQQAKVLTRYLKALFKSLLRELLCHLTMKNLFFSMVFMVSLIFFLANVSEAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSLGVQDRFLSKIPSACGIKVGFPVSTATNCETIH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
Q43119	116	Non-specific lipid-transf	N/A	no	0.811	1.0	0.767	2e-42
P10975	116	Non-specific lipid-transf	N/A	no	0.811	1.0	0.732	5e-41
O65888	118	Non-specific lipid-transf	N/A	no	0.608	0.737	0.613	2e-23
Q43766	118	Non-specific lipid-transf	N/A	no	0.748	0.906	0.390	2e-17
Q9SCZ0	119	Non-specific lipid-transf	yes	no	0.734	0.882	0.345	1e-16
A0AT28	118	Non-specific lipid-transf	N/A	no	0.755	0.915	0.345	2e-15
Q84N29	122	Probable non-specific lip	N/A	no	0.657	0.770	0.410	3e-15
Q9LLR6	112	Non-specific lipid-transf	no	no	0.671	0.857	0.394	1e-14
P19656	120	Non-specific lipid-transf	N/A	no	0.664	0.791	0.375	2e-14
Q43193	118	Non-specific lipid-transf	N/A	no	0.671	0.813	0.381	2e-14

>sp|Q43119|NLTPD_RICCO Non-specific lipid-transfer protein D, cotyledon-specific isoform OS=Ricinus communis PE=3 SV=1

 Score =  170 bits (431), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 89/116 (76%), Positives = 104/116 (89%)

Query: 28  MKNLFFSMVFMVSLIFFLANVSEAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQL 87
           MKN+FFS+ F++S +  LANVSEAA+ C TVD KAAACVGFATGK   P+SACC+GLQQL
Sbjct: 1   MKNIFFSVFFLLSFLLCLANVSEAAVPCSTVDMKAAACVGFATGKDSKPSSACCTGLQQL 60

Query: 88  AQSVKTVDDKKAICRCLKAGAKSLGVQDRFLSKIPSACGIKVGFPVSTATNCETIH 143
           AQ+VK+VDDKKAICRCLKA +KSLG++D+FLSKIP+AC IKVGFPVSTATNCETIH
Sbjct: 61  AQTVKSVDDKKAICRCLKASSKSLGIKDQFLSKIPAACNIKVGFPVSTATNCETIH 116

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.
Ricinus communis (taxid: 3988)

>sp|P10975|NLTPC_RICCO Non-specific lipid-transfer protein C, cotyledon-specific isoform OS=Ricinus communis PE=1 SV=2

 Score =  166 bits (419), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 85/116 (73%), Positives = 101/116 (87%)

Query: 28  MKNLFFSMVFMVSLIFFLANVSEAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQL 87
           MKN+ FS++ ++S +F LAN +EAA+ C TVD KAAACVGFATGK   P+ ACC+GLQQL
Sbjct: 1   MKNVVFSVLLLLSFLFCLANTNEAAVPCSTVDMKAAACVGFATGKDSKPSQACCTGLQQL 60

Query: 88  AQSVKTVDDKKAICRCLKAGAKSLGVQDRFLSKIPSACGIKVGFPVSTATNCETIH 143
           AQ+VKTVDDKKAICRCLKA +KSLG++D+FLSKIP+AC IKVGFPVST TNCETIH
Sbjct: 61  AQTVKTVDDKKAICRCLKASSKSLGIKDQFLSKIPAACNIKVGFPVSTNTNCETIH 116

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Ricinus communis (taxid: 3988)

>sp|O65888|NLTP_STRHE Non-specific lipid-transfer protein (Fragment) OS=Striga hermonthica PE=2 SV=1

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/88 (61%), Positives = 64/88 (72%), Gaps = 1/88 (1%)

Query: 46  ANVSEAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLK 105
           A VS  A+ CGTVD KAA+C+ FATGK   P++ACCSGL  LAQ+VKTV+D KAICRCLK
Sbjct: 1   ARVSNGALPCGTVDMKAASCISFATGKDKKPSAACCSGLHPLAQTVKTVEDNKAICRCLK 60

Query: 106 AGAKSLG-VQDRFLSKIPSACGIKVGFP 132
              K+   VQDRFL +IP+ C IK   P
Sbjct: 61  TAIKNFSRVQDRFLGQIPTPCKIKGRLP 88

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Striga hermonthica (taxid: 68872)

>sp|Q43766|NLTP3_HORVU Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 71/110 (64%), Gaps = 3/110 (2%)

Query: 35  MVFMVSLIFFLANVSEAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTV 94
           +V MV+ +  +A  ++AAI+CG V +  + C+ +A G    P  ACCSG+++LA + ++ 
Sbjct: 11  LVAMVAAMLLVA--TDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQST 68

Query: 95  DDKKAICRCLKAGAKSL-GVQDRFLSKIPSACGIKVGFPVSTATNCETIH 143
            DK+A CRCLK+ A S+ G+    +S +P  CG+ V FP+S +T+C  +H
Sbjct: 69  ADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTDCNKVH 118

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Hordeum vulgare (taxid: 4513)

>sp|Q9SCZ0|NLTPC_ARATH Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1

 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 65/107 (60%), Gaps = 2/107 (1%)

Query: 38  MVSLIFFLANVSEAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDK 97
           ++ L  ++A+ +E+ I CGTV +  A C+ + T   P P S CC G++ L Q  +T  D+
Sbjct: 11  LIVLTIYMASPTESTIQCGTVTSTLAQCLTYLTNSGPLP-SQCCVGVKSLYQLAQTTPDR 69

Query: 98  KAICRCLKAGAKSL-GVQDRFLSKIPSACGIKVGFPVSTATNCETIH 143
           K +C CLK   K + G+    ++ +P+ CG+ + +P+S +TNC++I 
Sbjct: 70  KQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSIS 116

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|A0AT28|NLTP1_LENCU Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 69/110 (62%), Gaps = 2/110 (1%)

Query: 35  MVFMVSLIFFLANVSEAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTV 94
           +V ++ ++   A ++EAAI+CGTV      C+ +  G  P P+  CC G+++L  + +T 
Sbjct: 9   LVALMCMVVISAPMAEAAISCGTVSGALVPCLTYLKG-GPGPSPQCCGGVKRLNGAARTT 67

Query: 95  DDKKAICRCLKAGAKSL-GVQDRFLSKIPSACGIKVGFPVSTATNCETIH 143
            D++A C CLK+ A S+ G++   ++ +P  CG+++ + +ST+TNC TI 
Sbjct: 68  IDRRAACNCLKSSAGSISGLKPGNVATLPGKCGVRLPYTISTSTNCNTIR 117

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Lens culinaris (taxid: 3864)

>sp|Q84N29|NLTP3_WHEAT Probable non-specific lipid-transfer protein 3 OS=Triticum aestivum GN=LTP3 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 60/95 (63%), Gaps = 1/95 (1%)

Query: 50  EAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAK 109
            AA++CG VD+K A CV + TG+A + +  CCSG+Q L    ++  D+K  CRCLK+ A 
Sbjct: 28  SAALSCGQVDSKLAPCVAYVTGRASSISKECCSGVQGLNGLARSSPDRKIACRCLKSLAT 87

Query: 110 SL-GVQDRFLSKIPSACGIKVGFPVSTATNCETIH 143
           S+  +    +S +P  CG+ V FP+S +TNC  ++
Sbjct: 88  SIKSINMGKVSGVPGKCGVSVPFPISMSTNCNNVN 122

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Triticum aestivum (taxid: 4565)

>sp|Q9LLR6|NLTP4_ARATH Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=3 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 65/104 (62%), Gaps = 8/104 (7%)

Query: 42  IFFLANVSEAAIACGTVDAKAAACVGFAT--GKAPTPTSACCSGLQQLAQSVKTVDDKKA 99
           +F +A+V +AAI CGTV +  + C+G+ +  G  P P   CC+G+++L    +T  D++ 
Sbjct: 15  VFIVASV-DAAITCGTVASSLSPCLGYLSKGGVVPPP---CCAGVKKLNGMAQTTPDRQQ 70

Query: 100 ICRCLKAGAKSLGVQDRFLSKIPSACGIKVGFPVSTATNCETIH 143
            CRCL++ AK  GV     S +P  CG+ + +P+ST+TNC TI 
Sbjct: 71  ACRCLQSAAK--GVNPSLASGLPGKCGVSIPYPISTSTNCATIK 112

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|P19656|NLTP_MAIZE Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 60/96 (62%), Gaps = 1/96 (1%)

Query: 49  SEAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGA 108
           SEAAI+CG V +  A C+ +A G+   P++ CCSG++ L  + +T  D++A C CLK  A
Sbjct: 25  SEAAISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAA 84

Query: 109 KSL-GVQDRFLSKIPSACGIKVGFPVSTATNCETIH 143
             + G+     + IPS CG+ + + +ST+T+C  ++
Sbjct: 85  AGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRVN 120

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Zea mays (taxid: 4577)

>sp|Q43193|NLTP1_SORBI Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 60/97 (61%), Gaps = 1/97 (1%)

Query: 48  VSEAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAG 107
            SEAAI+CG V +  A C+ +A G+   P++ CCSG++ L  + +T  D++A C CLK  
Sbjct: 22  TSEAAISCGQVSSAIALCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCLKNA 81

Query: 108 AKSL-GVQDRFLSKIPSACGIKVGFPVSTATNCETIH 143
           A+ + G+     + IPS CG+ V + +ST+T+C  + 
Sbjct: 82  ARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRVS 118

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Sorghum bicolor (taxid: 4558)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
255586227	116	Nonspecific lipid-transfer protein D, co	0.811	1.0	0.767	1e-40
266638	116	RecName: Full=Non-specific lipid-transfe	0.811	1.0	0.732	4e-39
255586229	116	Nonspecific lipid-transfer protein C, co	0.811	1.0	0.732	4e-39
225444185	111	PREDICTED: non-specific lipid-transfer p	0.762	0.981	0.710	3e-38
297740912	129	unnamed protein product [Vitis vinifera]	0.797	0.883	0.721	1e-36
225444183	115	PREDICTED: non-specific lipid-transfer p	0.797	0.991	0.721	2e-36
6225767	118	RecName: Full=Non-specific lipid-transfe	0.608	0.737	0.613	2e-21
297819858	119	hypothetical protein ARALYDRAFT_485511 [	0.734	0.882	0.373	4e-16
6225766	118	RecName: Full=Non-specific lipid-transfe	0.748	0.906	0.390	1e-15
116782765	118	unknown [Picea sitchensis] gi|116790141|	0.825	1.0	0.347	6e-15

>gi|255586227|ref|XP_002533768.1| Nonspecific lipid-transfer protein D, cotyledon-specific isoform precursor [Ricinus communis] gi|2497754|sp|Q43119.1|NLTPD_RICCO RecName: Full=Non-specific lipid-transfer protein D, cotyledon-specific isoform; Short=NS-LTP D; Flags: Precursor gi|169709|gb|AAA33876.1| lipid transfer protein [Ricinus communis] gi|223526305|gb|EEF28613.1| Nonspecific lipid-transfer protein D, cotyledon-specific isoform precursor [Ricinus communis]

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 89/116 (76%), Positives = 104/116 (89%)

Query: 28  MKNLFFSMVFMVSLIFFLANVSEAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQL 87
           MKN+FFS+ F++S +  LANVSEAA+ C TVD KAAACVGFATGK   P+SACC+GLQQL
Sbjct: 1   MKNIFFSVFFLLSFLLCLANVSEAAVPCSTVDMKAAACVGFATGKDSKPSSACCTGLQQL 60

Query: 88  AQSVKTVDDKKAICRCLKAGAKSLGVQDRFLSKIPSACGIKVGFPVSTATNCETIH 143
           AQ+VK+VDDKKAICRCLKA +KSLG++D+FLSKIP+AC IKVGFPVSTATNCETIH
Sbjct: 61  AQTVKSVDDKKAICRCLKASSKSLGIKDQFLSKIPAACNIKVGFPVSTATNCETIH 116

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|266638|sp|P10975.2|NLTPC_RICCO RecName: Full=Non-specific lipid-transfer protein C, cotyledon-specific isoform; Short=NS-LTP C; AltName: Full=Phospholipid transfer protein; Short=PLTP; Flags: Precursor gi|218023|dbj|BAA01802.1| non specific lipid transfer protein-C [Ricinus communis]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 85/116 (73%), Positives = 101/116 (87%)

Query: 28  MKNLFFSMVFMVSLIFFLANVSEAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQL 87
           MKN+ FS++ ++S +F LAN +EAA+ C TVD KAAACVGFATGK   P+ ACC+GLQQL
Sbjct: 1   MKNVVFSVLLLLSFLFCLANTNEAAVPCSTVDMKAAACVGFATGKDSKPSQACCTGLQQL 60

Query: 88  AQSVKTVDDKKAICRCLKAGAKSLGVQDRFLSKIPSACGIKVGFPVSTATNCETIH 143
           AQ+VKTVDDKKAICRCLKA +KSLG++D+FLSKIP+AC IKVGFPVST TNCETIH
Sbjct: 61  AQTVKTVDDKKAICRCLKASSKSLGIKDQFLSKIPAACNIKVGFPVSTNTNCETIH 116

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586229|ref|XP_002533769.1| Nonspecific lipid-transfer protein C, cotyledon-specific isoform precursor [Ricinus communis] gi|169711|gb|AAA33877.1| lipid transfer protein [Ricinus communis] gi|223526306|gb|EEF28614.1| Nonspecific lipid-transfer protein C, cotyledon-specific isoform precursor [Ricinus communis]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 85/116 (73%), Positives = 100/116 (86%)

Query: 28  MKNLFFSMVFMVSLIFFLANVSEAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQL 87
           MKN  FS++ ++S +F LAN +EAA+ C TVD KAAACVGFATGK   P+ ACC+GLQQL
Sbjct: 1   MKNAVFSVLLLLSFLFCLANTNEAAVPCSTVDMKAAACVGFATGKDSKPSQACCTGLQQL 60

Query: 88  AQSVKTVDDKKAICRCLKAGAKSLGVQDRFLSKIPSACGIKVGFPVSTATNCETIH 143
           AQ+VKTVDDKKAICRCLKA +KSLG++D+FLSKIP+AC IKVGFPVST TNCETIH
Sbjct: 61  AQTVKTVDDKKAICRCLKASSKSLGIKDQFLSKIPAACNIKVGFPVSTNTNCETIH 116

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444185|ref|XP_002269497.1| PREDICTED: non-specific lipid-transfer protein C, cotyledon-specific isoform-like [Vitis vinifera]

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 81/114 (71%), Positives = 93/114 (81%), Gaps = 5/114 (4%)

Query: 28  MKNLFFSMVFMVSLIFFLANVSEAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQL 87
           MKN+FFS+V    +IFFLA+ SEA + CGTVD KAAACVG+ATGK P P+ ACCSGLQQL
Sbjct: 1   MKNIFFSLV----VIFFLASTSEATVPCGTVDMKAAACVGYATGKEPKPSPACCSGLQQL 56

Query: 88  AQSVKTVDDKKAICRCLKAGAKSL-GVQDRFLSKIPSACGIKVGFPVSTATNCE 140
           A +VKTVDDKK ICRCLK G K+  GVQD+FLS+IP+ C IKVGFPVS  TNCE
Sbjct: 57  AGTVKTVDDKKNICRCLKNGVKAFAGVQDKFLSQIPAVCNIKVGFPVSLNTNCE 110

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740912|emb|CBI31094.3| unnamed protein product [Vitis vinifera]

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 83/115 (72%), Positives = 94/115 (81%), Gaps = 1/115 (0%)

Query: 28  MKNLFFSMVFMVSLIFFLANVSEAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQL 87
           MKN FFSMVF++S + FLA+ S A + CGTVD KAAACVG+ATGK P P+ ACCSGLQQL
Sbjct: 1   MKNTFFSMVFLLSFLLFLASTSGATVPCGTVDMKAAACVGYATGKQPKPSPACCSGLQQL 60

Query: 88  AQSVKTVDDKKAICRCLKAGAKSL-GVQDRFLSKIPSACGIKVGFPVSTATNCET 141
           A +VKTVDDKK ICRCLK G K+  GVQDR LS+IP+AC IKVGFPVS  TNCET
Sbjct: 61  AATVKTVDDKKNICRCLKNGVKAFAGVQDRLLSQIPTACNIKVGFPVSLNTNCET 115

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444183|ref|XP_002271584.1| PREDICTED: non-specific lipid-transfer protein C, cotyledon-specific isoform-like [Vitis vinifera]

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/115 (72%), Positives = 94/115 (81%), Gaps = 1/115 (0%)

Query: 28  MKNLFFSMVFMVSLIFFLANVSEAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQL 87
           MKN FFSMVF++S + FLA+ S A + CGTVD KAAACVG+ATGK P P+ ACCSGLQQL
Sbjct: 1   MKNTFFSMVFLLSFLLFLASTSGATVPCGTVDMKAAACVGYATGKQPKPSPACCSGLQQL 60

Query: 88  AQSVKTVDDKKAICRCLKAGAKSL-GVQDRFLSKIPSACGIKVGFPVSTATNCET 141
           A +VKTVDDKK ICRCLK G K+  GVQDR LS+IP+AC IKVGFPVS  TNCET
Sbjct: 61  AATVKTVDDKKNICRCLKNGVKAFAGVQDRLLSQIPTACNIKVGFPVSLNTNCET 115

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6225767|sp|O65888.1|NLTP_STRHE RecName: Full=Non-specific lipid-transfer protein; Short=LTP; Flags: Precursor gi|3059145|emb|CAA76135.1| non-specific lipid transfer protein [Striga hermonthica]

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/88 (61%), Positives = 64/88 (72%), Gaps = 1/88 (1%)

Query: 46  ANVSEAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLK 105
           A VS  A+ CGTVD KAA+C+ FATGK   P++ACCSGL  LAQ+VKTV+D KAICRCLK
Sbjct: 1   ARVSNGALPCGTVDMKAASCISFATGKDKKPSAACCSGLHPLAQTVKTVEDNKAICRCLK 60

Query: 106 AGAKSLG-VQDRFLSKIPSACGIKVGFP 132
              K+   VQDRFL +IP+ C IK   P
Sbjct: 61  TAIKNFSRVQDRFLGQIPTPCKIKGRLP 88

Source: Striga hermonthica

Species: Striga hermonthica

Genus: Striga

Family: Orobanchaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819858|ref|XP_002877812.1| hypothetical protein ARALYDRAFT_485511 [Arabidopsis lyrata subsp. lyrata] gi|297323650|gb|EFH54071.1| hypothetical protein ARALYDRAFT_485511 [Arabidopsis lyrata subsp. lyrata]

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 66/107 (61%), Gaps = 2/107 (1%)

Query: 38  MVSLIFFLANVSEAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDK 97
           ++ L  ++A+ +E+ I CGTV +  A CV + T   P P S CC G++ L Q  +T  D+
Sbjct: 11  LIVLTIYMASPTESTIQCGTVTSTLAQCVNYLTNSGPLP-SECCVGVKSLYQMAQTTPDR 69

Query: 98  KAICRCLKAGAKSL-GVQDRFLSKIPSACGIKVGFPVSTATNCETIH 143
           K +C CLKA  K + G+    ++ +P+ CG+ V +P+S +TNC++I 
Sbjct: 70  KQVCECLKATGKEIKGLNTDLVASLPTTCGVSVPYPISFSTNCDSIS 116

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6225766|sp|Q43766.1|NLTP3_HORVU RecName: Full=Non-specific lipid-transfer protein 3; Short=LTP 3; AltName: Full=CW-19; AltName: Full=CW-20; Short=CW20; Flags: Precursor gi|510528|emb|CAA48623.1| Cw-19 peptide,non specific lipid transfer protein [Hordeum vulgare subsp. vulgare]

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 71/110 (64%), Gaps = 3/110 (2%)

Query: 35  MVFMVSLIFFLANVSEAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTV 94
           +V MV+ +  +A  ++AAI+CG V +  + C+ +A G    P  ACCSG+++LA + ++ 
Sbjct: 11  LVAMVAAMLLVA--TDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQST 68

Query: 95  DDKKAICRCLKAGAKSL-GVQDRFLSKIPSACGIKVGFPVSTATNCETIH 143
            DK+A CRCLK+ A S+ G+    +S +P  CG+ V FP+S +T+C  +H
Sbjct: 69  ADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTDCNKVH 118

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116782765|gb|ABK22649.1| unknown [Picea sitchensis] gi|116790141|gb|ABK25515.1| unknown [Picea sitchensis] gi|224285491|gb|ACN40466.1| unknown [Picea sitchensis]

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 72/118 (61%)

Query: 26  LTMKNLFFSMVFMVSLIFFLANVSEAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQ 85
           +    ++  +VF +++     + +EAAI+C TV A    C+ + TG A +P +ACC+G++
Sbjct: 1   MRTSTIWKVLVFALAVQAAAMDGAEAAISCSTVIADLVPCLSYVTGSAASPPAACCNGVK 60

Query: 86  QLAQSVKTVDDKKAICRCLKAGAKSLGVQDRFLSKIPSACGIKVGFPVSTATNCETIH 143
            L  + +T  D++A C+C+K+ A S         KIP+ CG+ +G P+S +T+C+TIH
Sbjct: 61  TLNAAAQTTPDRQAACKCIKSAAASYHYNSAKADKIPALCGVNIGIPISPSTSCDTIH 118

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
UNIPROTKB|Q84N29	122	LTP3 "Probable non-specific li	0.846	0.991	0.344	1.7e-18
TAIR|locus:2081840	119	LTP12 "lipid transfer protein	0.727	0.873	0.349	2.8e-18
TAIR|locus:2168459	112	LTP4 "lipid transfer protein 4	0.720	0.919	0.389	1.6e-17
TAIR|locus:2064212	118	LP1 "lipid transfer protein 1"	0.650	0.788	0.375	3.7e-16
TAIR|locus:2168474	115	LTP3 "lipid transfer protein 3	0.762	0.947	0.345	6e-16
TAIR|locus:2081855	118	LTP5 "lipid transfer protein 5	0.776	0.940	0.324	2.6e-15
TAIR|locus:2064107	118	LTP2 "lipid transfer protein 2	0.650	0.788	0.343	8.8e-15
UNIPROTKB|P83434	91	P83434 "Non-specific lipid-tra	0.629	0.989	0.347	1.4e-14
TAIR|locus:2062116	116	AT2G18370 [Arabidopsis thalian	0.706	0.870	0.346	3.8e-14
TAIR|locus:2181022	116	AT5G01870 [Arabidopsis thalian	0.748	0.922	0.313	2.7e-13

UNIPROTKB|Q84N29 LTP3 "Probable non-specific lipid-transfer protein 3" [Triticum aestivum (taxid:4565)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 42/122 (34%), Positives = 70/122 (57%)

Query:    23 LCHLTMKNLFFSMVFMVSLIFFLANVSEAAIACGTVDAKAAACVGFATGKAPTPTSACCS 82
             +  L  K +  ++V    ++      + AA++CG VD+K A CV + TG+A + +  CCS
Sbjct:     1 MARLNSKAVAAAVVLAAVVLMMAGREASAALSCGQVDSKLAPCVAYVTGRASSISKECCS 60

Query:    83 GLQQLAQSVKTVDDKKAICRCLKAGAKSL-GVQDRFLSKIPSACGIKVGFPVSTATNCET 141
             G+Q L    ++  D+K  CRCLK+ A S+  +    +S +P  CG+ V FP+S +TNC  
Sbjct:    61 GVQGLNGLARSSPDRKIACRCLKSLATSIKSINMGKVSGVPGKCGVSVPFPISMSTNCNN 120

Query:   142 IH 143
             ++
Sbjct:   121 VN 122

GO:0009611 "response to wounding" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0042542 "response to hydrogen peroxide" evidence=IDA

TAIR|locus:2081840 LTP12 "lipid transfer protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 37/106 (34%), Positives = 65/106 (61%)

Query:    38 MVSLIFFLANVSEAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDK 97
             ++ L  ++A+ +E+ I CGTV +  A C+ + T   P P S CC G++ L Q  +T  D+
Sbjct:    11 LIVLTIYMASPTESTIQCGTVTSTLAQCLTYLTNSGPLP-SQCCVGVKSLYQLAQTTPDR 69

Query:    98 KAICRCLKAGAKSL-GVQDRFLSKIPSACGIKVGFPVSTATNCETI 142
             K +C CLK   K + G+    ++ +P+ CG+ + +P+S +TNC++I
Sbjct:    70 KQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0009505 "plant-type cell wall" evidence=ISS

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2168459 LTP4 "lipid transfer protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 44/113 (38%), Positives = 72/113 (63%)

Query:    32 FFSMVFMVSLIFFLANVSEAAIACGTVDAKAAACVGFAT--GKAPTPTSACCSGLQQLAQ 89
             FF+  F+++ +F +A+V +AAI CGTV +  + C+G+ +  G  P P   CC+G+++L  
Sbjct:     7 FFTC-FVLT-VFIVASV-DAAITCGTVASSLSPCLGYLSKGGVVPPP---CCAGVKKLNG 60

Query:    90 SVKTVDDKKAICRCLKAGAKSLGVQDRFLSKIPSACGIKVGFPVSTATNCETI 142
               +T  D++  CRCL++ AK  GV     S +P  CG+ + +P+ST+TNC TI
Sbjct:    61 MAQTTPDRQQACRCLQSAAK--GVNPSLASGLPGKCGVSIPYPISTSTNCATI 111

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;TAS

GO:0008289 "lipid binding" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009409 "response to cold" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2064212 LP1 "lipid transfer protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 36/96 (37%), Positives = 60/96 (62%)

Query:    49 SEAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGA 108
             S AA++CG+V++  AAC+G+       P  ACCSG++ L    KT  D++  C C++  A
Sbjct:    23 SNAALSCGSVNSNLAACIGYVLQGGVIPP-ACCSGVKNLNSIAKTTPDRQQACNCIQGAA 81

Query:   109 KSLG--VQDRFLSKIPSACGIKVGFPVSTATNCETI 142
             ++LG  +     + IP ACG+ + + +ST+TNC+T+
Sbjct:    82 RALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTV 117

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;TAS

GO:0008289 "lipid binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

TAIR|locus:2168474 LTP3 "lipid transfer protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 39/113 (34%), Positives = 64/113 (56%)

Query:    33 FSMVFMVSLIFFLANVS--EAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQS 90
             F++ F   L+  +  V+  +AAI+CGTV    A C  + +     P S CC+G++ L   
Sbjct:     3 FALRFFTCLVLTVCIVASVDAAISCGTVAGSLAPCATYLSKGGLVPPS-CCAGVKTLNSM 61

Query:    91 VKTVDDKKAICRCLKAGAKSL-GVQDRFLSKIPSACGIKVGFPVSTATNCETI 142
              KT  D++  CRC+++ AKS+ G+     S +P  CG+ + +P+S +TNC  I
Sbjct:    62 AKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNI 114

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0005618 "cell wall" evidence=TAS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0048046 "apoplast" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009409 "response to cold" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2081855 LTP5 "lipid transfer protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 37/114 (32%), Positives = 62/114 (54%)

Query:    31 LFFSMVFMVSLIFFLANVSEAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQS 90
             L  S + +V ++      SEAAI+CG V      C  + T     P   CCSG+Q+L   
Sbjct:     5 LKLSTLVIVCMLVTAPMASEAAISCGAVTGSLGQCYNYLTRGGFIPRG-CCSGVQRLNSL 63

Query:    91 VKTVDDKKAICRCLKAGAKSLG--VQDRFLSKIPSACGIKVGFPVSTATNCETI 142
              +T  D++  CRC++  A++LG  +     +++P AC +++ +P+S  TNC T+
Sbjct:    64 ARTTRDRQQACRCIQGAARALGSRLNAGRAARLPGACRVRISYPISARTNCNTV 117

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000038 "very long-chain fatty acid metabolic process" evidence=RCA

GO:0042335 "cuticle development" evidence=RCA

TAIR|locus:2064107 LTP2 "lipid transfer protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 33/96 (34%), Positives = 56/96 (58%)

Query:    49 SEAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGA 108
             + A ++CGTV+   A C+ + T  AP  T  CC+G+  L     T  D++  CRCL++ A
Sbjct:    23 ANALMSCGTVNGNLAGCIAYLTRGAPL-TQGCCNGVTNLKNMASTTPDRQQACRCLQSAA 81

Query:   109 KSLG--VQDRFLSKIPSACGIKVGFPVSTATNCETI 142
             K++G  +     + +PSAC + + + +S +TNC T+
Sbjct:    82 KAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTV 117

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0006649 "phospholipid transfer to membrane" evidence=NAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0012501 "programmed cell death" evidence=IGI

GO:0009414 "response to water deprivation" evidence=IEP

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

UNIPROTKB|P83434 P83434 "Non-specific lipid-transfer protein 1" [Vigna radiata var. radiata (taxid:3916)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 32/92 (34%), Positives = 53/92 (57%)

Query:    53 IACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL- 111
             + CG V    A C+GF       P S CC+G++ +  S +T  D++A+C CLKA A ++ 
Sbjct:     1 MTCGQVQGNLAQCIGFLQKGGVVPPS-CCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR 59

Query:   112 GVQDRFLSKIPSACGIKVGFPVSTATNCETIH 143
             G+       +P  CG+ + + +ST+TNC +I+
Sbjct:    60 GINPNNAEALPGKCGVNIPYKISTSTNCNSIN 91

GO:0005215 "transporter activity" evidence=IDA

GO:0005575 "cellular_component" evidence=ND

GO:0006869 "lipid transport" evidence=IDA

GO:0008289 "lipid binding" evidence=IDA

GO:0050830 "defense response to Gram-positive bacterium" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IDA

TAIR|locus:2062116 AT2G18370 [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 35/101 (34%), Positives = 52/101 (51%)

Query:    42 IFFLANVSEAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAIC 101
             IFF+   SE+AI+C  V      CV + T  +  P   CC G++ LA +  T  DKKA C
Sbjct:    15 IFFIPRYSESAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAAC 74

Query:   102 RCLKAGAKSLGVQDRFLSKIPSACGIKVGFPVSTATNCETI 142
             +C+K+ A S+ V+      + S CG  +    S   +C T+
Sbjct:    75 QCIKSVANSVTVKPELAQALASNCGASLPVDASPTVDCTTV 115

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

TAIR|locus:2181022 AT5G01870 [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 36/115 (31%), Positives = 61/115 (53%)

Query:    35 MVFMVSLIFFLANV----SEAAIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQS 90
             M  ++ L   LA++    SEAAI+C  V A    CV +       P S CC+G++ L++ 
Sbjct:     2 MRVVLPLCLLLASIFAWGSEAAISCNAVQANLYPCVVYVVQGGAIPYS-CCNGIRMLSKQ 60

Query:    91 VKTVDDKKAICRCLKAGAKSLGVQDRFLSK---IPSACGIKVGFPVSTATNCETI 142
               +  DK+ +CRC+K+    +     +L K   +P  CG+K+ + +  +TNC +I
Sbjct:    61 ATSASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSI 115

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q43119	NLTPD_RICCO	No assigned EC number	0.7672	0.8111	1.0	N/A	no
P10975	NLTPC_RICCO	No assigned EC number	0.7327	0.8111	1.0	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	143
cd01960	89	cd01960, nsLTP1, nsLTP1: Non-specific lipid-transf	1e-26
pfam00234	74	pfam00234, Tryp_alpha_amyl, Protease inhibitor/see	1e-08
cd00010	63	cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibit	3e-05
smart00499	79	smart00499, AAI, Plant lipid transfer protein / se	4e-04

>gnl|CDD|238926 cd01960, nsLTP1, nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

 Score = 95.1 bits (237), Expect = 1e-26
 Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 1/88 (1%)

Query: 53  IACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL- 111
           I+CG V +  A C+G+ TG  P P+ ACCSG++ L    KT  D++A C CLK+ A  + 
Sbjct: 1   ISCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGIS 60

Query: 112 GVQDRFLSKIPSACGIKVGFPVSTATNC 139
           G+     + +P  CG+ + +P+S +T+C
Sbjct: 61  GLNPGRAAGLPGKCGVSIPYPISPSTDC 88

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans. Length = 89

>gnl|CDD|215810 pfam00234, Tryp_alpha_amyl, Protease inhibitor/seed storage/LTP family

 Score = 48.7 bits (116), Expect = 1e-08
 Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 13/78 (16%)

Query: 55  CGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSLGVQ 114
           CG V  K A C G+  G    P+  CCS L+QL             CRC    A  LG++
Sbjct: 1   CGQVLLKLAPCAGYLQGGCQVPSQQCCSQLRQLQA----------QCRCTAIRAIVLGIE 50

Query: 115 DR---FLSKIPSACGIKV 129
                  + +PS CG+ V
Sbjct: 51  GINPQAAASLPSMCGVNV 68

This family is composed of trypsin-alpha amylase inhibitors, seed storage proteins and lipid transfer proteins from plants. Length = 74

>gnl|CDD|237980 cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

 Score = 39.3 bits (92), Expect = 3e-05
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 7/67 (10%)

Query: 63  AACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLK-AGAKSLGVQDRFLS-K 120
           A C+ + TG A  P S CCSGL+ + +S     D K +C  L   GA  LG+++   +  
Sbjct: 2   APCLSYLTGGATAPPSDCCSGLKSVVKS-----DPKCLCAALNGPGASLLGLKNATRALA 56

Query: 121 IPSACGI 127
           +P+ACG+
Sbjct: 57  LPAACGL 63

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges. Length = 63

>gnl|CDD|214698 smart00499, AAI, Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

 Score = 36.6 bits (84), Expect = 4e-04
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 17/87 (19%)

Query: 55  CGTVDAKAAACVGFATGKA--PTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSLG 112
           CG V  + A C+ +  G +    P+  CCS L+ L  +          CRCL   A  LG
Sbjct: 1   CGQVLLQLAPCLSYLVGGSRGAPPSQQCCSQLRGLNSAQ---------CRCLALRAAVLG 51

Query: 113 VQ------DRFLSKIPSACGIKVGFPV 133
           +        +  + +PSACG+   +  
Sbjct: 52  ILEIPGLNAQNAASLPSACGVPPPYTD 78

Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
cd01960	89	nsLTP1 nsLTP1: Non-specific lipid-transfer protein	99.92
cd04660	73	nsLTP_like nsLTP_like: Non-specific lipid-transfer	99.54
cd00010	63	AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI),	99.45
PF14368	96	LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A	99.41
cd01959	66	nsLTP2 nsLTP2: Non-specific lipid-transfer protein	99.25
PF00234	90	Tryp_alpha_amyl: Protease inhibitor/seed storage/L	99.05
smart00499	79	AAI Plant lipid transfer protein / seed storage pr	98.94
PF14547	85	Hydrophob_seed: Hydrophobic seed protein	92.78
cd01958	85	HPS_like HPS_like: Hydrophobic Protein from Soybea	91.9

>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.92  E-value=4.4e-26  Score=157.74  Aligned_cols=88  Identities=39%  Similarity=0.910  Sum_probs=82.2

Q ss_pred             cCchhhhhccccchhhhcCCCCCCcHhhhHHHHhhhhhhcccccccccceeeccccccC-CCChHHHhhccccCCCCCCC
Q 045117           53 IACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL-GVQDRFLSKIPSACGIKVGF  131 (143)
Q Consensus        53 ~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~~-~in~~ra~~LP~~Cgv~~p~  131 (143)
                      .+|..+...|.||++|++|++..|+++||+|++++++.++++.|++++|+|+++....+ +||.++|.+||++||+++||
T Consensus         1 ~~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v~~~~   80 (89)
T cd01960           1 ISCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGVSIPY   80 (89)
T ss_pred             CCHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhcccCCCC
Confidence            36999999999999999997779999999999999999999999999999998877777 59999999999999999999


Q ss_pred             CCCCCCCCC
Q 045117          132 PVSTATNCE  140 (143)
Q Consensus       132 pIs~~~dC~  140 (143)
                      ||+++|||+
T Consensus        81 ~i~~~~dC~   89 (89)
T cd01960          81 PISPSTDCS   89 (89)
T ss_pred             CCCCCCCCC
Confidence            999999996

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.

>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3

Probab=99.54  E-value=5.1e-15  Score=99.14  Aligned_cols=66  Identities=26%  Similarity=0.574  Sum_probs=52.4

Q ss_pred             chhhhhccccchhhhcCCC--CCCcHhhhHHHHhhhhhhcccccccccceeeccccccC-CCChHHHhhccccCCCCCC
Q 045117           55 CGTVDAKAAACVGFATGKA--PTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL-GVQDRFLSKIPSACGIKVG  130 (143)
Q Consensus        55 C~~v~~~L~pCl~yl~g~~--~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~~-~in~~ra~~LP~~Cgv~~p  130 (143)
                      |+.....|.||++|+++++  ..|++.||+++|++        |++  |+|.+.....+ +||.++|.+||++||+++|
T Consensus         1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~--------~~~--C~C~~~~~~~~~~i~~~~a~~Lp~~Cgv~~p   69 (73)
T cd04660           1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRA--------DLP--CLCRYKTSLVLQIIDPDKAVYLPAKCGLPLP   69 (73)
T ss_pred             CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcC--------CcC--CEeeccCCCcccccCHHHHHHHHHHcCCCCC
Confidence            4555578999999999866  36899999999985        444  77765444334 6999999999999999987

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.

>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

Probab=99.45  E-value=4.6e-14  Score=91.15  Aligned_cols=61  Identities=39%  Similarity=0.827  Sum_probs=51.3

Q ss_pred             cccchhhhcCCCCCCcHhhhHHHHhhhhhhcccccccccceeeccccccC-CC-ChHHHhhccccCCC
Q 045117           62 AAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL-GV-QDRFLSKIPSACGI  127 (143)
Q Consensus        62 L~pCl~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~~-~i-n~~ra~~LP~~Cgv  127 (143)
                      |.||++|++|++..|+++||++++++++.     |++++|.++++..... ++ |.+++..||++||+
T Consensus         1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~-----~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv   63 (63)
T cd00010           1 LAPCLSYLTGGATAPPSDCCSGLKSVVKS-----DPKCLCAALNGPGASLLGLKNATRALALPAACGL   63 (63)
T ss_pred             CcchHHHHcCCCCCCChHHHHHHHHHHhc-----ChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence            57999999987679999999999998752     6778888888765443 55 79999999999996

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.

>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A

Probab=99.41  E-value=3.7e-14  Score=97.81  Aligned_cols=72  Identities=29%  Similarity=0.703  Sum_probs=47.4

Q ss_pred             cccCchhhhhccccc---hhhhcCCCCCCcHhhhHHHHhhhhhhcccccccccceeecccc-ccCCCChHHHhhccccCC
Q 045117           51 AAIACGTVDAKAAAC---VGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGA-KSLGVQDRFLSKIPSACG  126 (143)
Q Consensus        51 a~~~C~~v~~~L~pC---l~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~-~~~~in~~ra~~LP~~Cg  126 (143)
                      ...+|..   .|.||   ..|+++ +..||++||++++++.+     .|..++|.++++.. ..++||.+++..||++||
T Consensus        18 ~~~~c~~---~l~~c~~~~~~~~~-~~~Ps~~CC~~l~~~~~-----~~~~ClC~~~~~~~~~~~~in~~~a~~Lp~~Cg   88 (96)
T PF14368_consen   18 CCCSCAN---SLLPCCPCLCYVTG-GPAPSAACCSALKSVVQ-----ADPPCLCQLLNSPGAPGFGINVTRALALPAACG   88 (96)
T ss_dssp             BTTB-HC---CCCHH--HHHHHCC------HHHHHHHCC---------HCCHHHCCCC-CCHCHHCCTCHHHHHHHHHCT
T ss_pred             CcchhHH---HHhccccchhccCC-CCCCCHHHHHHHHHhcc-----CCCCCHHHhcCccccccCCcCHHHHHHHHHHcC
Confidence            3455644   46666   788885 67999999999999853     25678888887655 445899999999999999


Q ss_pred             CCCCC
Q 045117          127 IKVGF  131 (143)
Q Consensus       127 v~~p~  131 (143)
                      ++.|.
T Consensus        89 ~~~~~   93 (96)
T PF14368_consen   89 VPVPP   93 (96)
T ss_dssp             SS-S-
T ss_pred             CCCCC
Confidence            99884

>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.25  E-value=5.1e-12  Score=83.56  Aligned_cols=61  Identities=23%  Similarity=0.511  Sum_probs=48.0

Q ss_pred             hccccchhhhcCCCCCCcHhhhHHHHhhhhhhcccccccccceeeccccccCCCChHHHhhccccCCCCCC
Q 045117           60 AKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSLGVQDRFLSKIPSACGIKVG  130 (143)
Q Consensus        60 ~~L~pCl~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~~~in~~ra~~LP~~Cgv~~p  130 (143)
                      +.|.+|++|+++ +..||++||+.+|+-        + .++|..+++......||.++|..||++||+++|
T Consensus         4 ~~L~~C~~ai~~-~~~Ps~~CC~~Lk~~--------~-~CLC~y~~~p~l~~~i~~~~A~~l~~~Cgv~~P   64 (66)
T cd01959           4 TQLSPCLPAILG-GSPPSAACCAKLKEQ--------Q-SCLCQYAKNPSLKQYVNSPNARKVLAACGVPYP   64 (66)
T ss_pred             hhcccCHHHHhC-CCCCCHHHHHHHhcC--------C-CCeeeeecCccHHhhcCcHHHHHHHHHcCCCCC
Confidence            389999999997 478999999998872        2 466666655322225999999999999999986

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp

>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]

Probab=99.05  E-value=6.4e-12  Score=86.10  Aligned_cols=71  Identities=23%  Similarity=0.658  Sum_probs=55.8

Q ss_pred             hhhhhccccchhhhcCCCCCCcHhhhHHHHhhhhhhcccccccccceeecccccc-----------CCCChHHHhhcccc
Q 045117           56 GTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKS-----------LGVQDRFLSKIPSA  124 (143)
Q Consensus        56 ~~v~~~L~pCl~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~-----------~~in~~ra~~LP~~  124 (143)
                      +.....+.+|.+|++++...|+..||++|+++        ++++.|..++....+           .+++..+|..||+.
T Consensus         9 ~~~~~~l~~c~~~~~~~~~~~~~~CC~~L~~l--------~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~   80 (90)
T PF00234_consen    9 SPVQVRLSPCLPYLQGGCQQPSQQCCQQLRQL--------DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSM   80 (90)
T ss_dssp             GTTSSHHHGGHHHHTTSSSHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHH
T ss_pred             hhccccccccHHHHhcccccchHHHhHHHHHH--------hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            33334689999999986678999999999998        356777777654443           16899999999999


Q ss_pred             CCCCCCCCCCCCCCC
Q 045117          125 CGIKVGFPVSTATNC  139 (143)
Q Consensus       125 Cgv~~p~pIs~~~dC  139 (143)
                      ||+++|+     +||
T Consensus        81 C~v~~~~-----~~C   90 (90)
T PF00234_consen   81 CNVSPPY-----TDC   90 (90)
T ss_dssp             TTSSSSS-----S-G
T ss_pred             CCCCCCC-----CCC
Confidence            9999996     676

The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....

>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Probab=98.94  E-value=1.1e-09  Score=71.59  Aligned_cols=68  Identities=37%  Similarity=0.794  Sum_probs=52.0

Q ss_pred             chhhhhccccchhhhcCC--CCCCcHhhhHHHHhhhhhhcccccccccceeec--cccccC-C---CChHHHhhccccCC
Q 045117           55 CGTVDAKAAACVGFATGK--APTPTSACCSGLQQLAQSVKTVDDKKAICRCLK--AGAKSL-G---VQDRFLSKIPSACG  126 (143)
Q Consensus        55 C~~v~~~L~pCl~yl~g~--~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk--~~~~~~-~---in~~ra~~LP~~Cg  126 (143)
                      |..+...+.+|.+|+++.  ...|+.+||++++.+.         ...|+|..  .....+ .   ++..++..||+.||
T Consensus         1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~---------~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~   71 (79)
T smart00499        1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN---------SAQCRCLALRAAVLGILEIPGVNAQNAASLPSACG   71 (79)
T ss_pred             ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc---------ccCCcchhhhcccccccchhhhhHHHHHhhHHhcC
Confidence            566677788999999986  3588899999999984         24577753  322222 2   59999999999999


Q ss_pred             CCCCC
Q 045117          127 IKVGF  131 (143)
Q Consensus       127 v~~p~  131 (143)
                      +..++
T Consensus        72 ~~~~~   76 (79)
T smart00499       72 VPPPY   76 (79)
T ss_pred             CCCCC
Confidence            99874

>PF14547 Hydrophob_seed: Hydrophobic seed protein

Probab=92.78  E-value=0.045  Score=37.86  Aligned_cols=76  Identities=28%  Similarity=0.489  Sum_probs=46.4

Q ss_pred             chhhhhccccchhhhc----CCCCCCcHhhhHHHHhhhhhhcccccccccceee--cccccc-CCCChH-HHhhccccCC
Q 045117           55 CGTVDAKAAACVGFAT----GKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCL--KAGAKS-LGVQDR-FLSKIPSACG  126 (143)
Q Consensus        55 C~~v~~~L~pCl~yl~----g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Cl--k~~~~~-~~in~~-ra~~LP~~Cg  126 (143)
                      |.....+|.-|.+.+.    .-+..|..+||+-++.+.+      ...+.|+|-  |....+ +++|.+ ....|-..||
T Consensus         2 CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d------~~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CG   75 (85)
T PF14547_consen    2 CPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLAD------LDAAVCLCTAIKANVLGLINVNIPVALNLLLNACG   75 (85)
T ss_pred             CCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCccc------chHHHHHHHHHhhhcccccccccccHHHHHHHHhC
Confidence            4433346777888771    1123467899999998864      223678885  322222 233332 4467778899


Q ss_pred             CCCCCCCCCCCCCC
Q 045117          127 IKVGFPVSTATNCE  140 (143)
Q Consensus       127 v~~p~pIs~~~dC~  140 (143)
                      -..|    ++++|.
T Consensus        76 k~~p----~gf~C~   85 (85)
T PF14547_consen   76 KTVP----SGFTCP   85 (85)
T ss_pred             CcCc----CCCcCC
Confidence            9887    577773

>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

Probab=91.90  E-value=0.2  Score=34.69  Aligned_cols=76  Identities=25%  Similarity=0.482  Sum_probs=45.8

Q ss_pred             CchhhhhccccchhhhcCC----CCCCcHhhhHHHHhhhhhhcccccccccceeeccccccCCC--ChHH-HhhccccCC
Q 045117           54 ACGTVDAKAAACVGFATGK----APTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSLGV--QDRF-LSKIPSACG  126 (143)
Q Consensus        54 ~C~~v~~~L~pCl~yl~g~----~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~~~i--n~~r-a~~LP~~Cg  126 (143)
                      .|......|.-|.+-+..-    +..|..+||+-++.+.+.      ....|.|-.-.++-+||  |.+. ..-|-..||
T Consensus         3 ~CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dl------dAA~CLCtaikan~lgi~~~~pv~l~llln~CG   76 (85)
T cd01958           3 TCPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADL------DAAVCLCTAIKANILGISINIPVALSLLLNSCG   76 (85)
T ss_pred             CCCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhh------heeeeeeeeeeccccCcccccChhHHHHHHHHc
Confidence            3554445677788776321    235668999999988652      23678886322333343  3333 345556799


Q ss_pred             CCCCCCCCCCCCC
Q 045117          127 IKVGFPVSTATNC  139 (143)
Q Consensus       127 v~~p~pIs~~~dC  139 (143)
                      -..|    ++|.|
T Consensus        77 k~~P----~gf~C   85 (85)
T cd01958          77 RNVP----PGFTC   85 (85)
T ss_pred             CcCC----CCCcC
Confidence            9887    45554

In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	143
1fk0_A	93	Structural Basis Of Non-Specific Lipid Binding In M		7e-14
1siy_A	91	Nmr Structure Of Mung Bean Non-Specific Lipid Trans		1e-12
2ljo_A	93	3d Solution Structure Of Lipid Transfer Protein Lc-		6e-12
2alg_A	92	Crystal Structure Of Peach Pru P3, The Prototypic M		2e-10
1uva_A	91	Lipid Binding In Rice Nonspecific Lipid Transfer Pr		2e-10
1mid_A	91	Non-Specific Lipid Transfer Protein 1 From Barley I		4e-10
1be2_A	91	Lipid Transfer Protein Complexed With Palmitate, Nm		7e-10
1t12_A	91	Solution Structure Of A New Ltp1 Length = 91		6e-09
1bwo_A	90	The Crystal Structure Of Wheat Non-Specific Transfe		9e-09
1cz2_A	90	Solution Structure Of Wheat Ns-Ltp Complexed With P		2e-08

>pdb|1FK0|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize Lipid-Transfer Protein Complexes With Capric Acid Revealed By High-Resolution X-Ray Crystallography Length = 93

Iteration: 1
 Score = 72.8 bits (177), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 52  AIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL 111
           AI+CG V +  A C+ +A G+   P++ CCSG++ L  + +T  D++A C CLK  A  +
Sbjct: 1   AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60
Query: 112 -GVQDRFLSKIPSACGIKVGFPVSTATNCETIH 143
            G+     + IPS CG+ + + +ST+T+C  ++
Sbjct: 61  SGLNAGNAASIPSKCGVSIPYTISTSTDCSRVN 93

>pdb|1SIY|A Chain A, Nmr Structure Of Mung Bean Non-Specific Lipid Transfer Protein 1 Length = 91

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 53  IACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL- 111
           + CG V    A C+GF       P S CC+G++ +  S +T  D++A+C CLKA A ++ 
Sbjct: 1   MTCGQVQGNLAQCIGFLQKGGVVPPS-CCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR 59
Query: 112 GVQDRFLSKIPSACGIKVGFPVSTATNCETIH 143
           G+       +P  CG+ + + +ST+TNC +I+
Sbjct: 60  GINPNNAEALPGKCGVNIPYKISTSTNCNSIN 91

>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2 Length = 93

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 52  AIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL 111
           AI+CG V +  + C+ + TG  P P+  CC G+++L  +  T  D++A C CLK+ A S+
Sbjct: 1   AISCGAVTSDLSPCLTYLTG-GPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSI 59
Query: 112 G-VQDRFLSKIPSACGIKVGFPVSTATNCETI 142
             +     + +P  CG+ + + +ST TNC T+
Sbjct: 60  TKLNTNNAAALPGKCGVNIPYKISTTTNCNTV 91

>pdb|2ALG|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member Of The Family Of Plant Non-Specific Lipid Transfer Protein Pan-Allergens Length = 92

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 53  IACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL- 111
           I CG V +  A C+ +  G    P  ACC+G++ +    +T  D++A C CLK  + S+ 
Sbjct: 2   ITCGQVSSSLAPCIPYVRGGGAVP-PACCNGIRNVNNLARTTPDRQAACNCLKQLSASVP 60
Query: 112 GVQDRFLSKIPSACGIKVGFPVSTATNCETI 142
           GV     + +P  CG+ + + +S +TNC T+
Sbjct: 61  GVNPNNAAALPGKCGVSIPYKISASTNCATV 91

>pdb|1UVA|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1 Complexes From Oryza Sativa Length = 91

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 53  IACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL- 111
           I CG V++    C+ +A G A  P++ACCSG++ L  +  T  D++  C CLK  A+ + 
Sbjct: 1   ITCGQVNSAVGPCLTYARGGA-GPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIK 59
Query: 112 GVQDRFLSKIPSACGIKVGFPVSTATNCETIH 143
           G+     + IPS CG+ V + +S + +C  + 
Sbjct: 60  GLNAGNAASIPSKCGVSVPYTISASIDCSRVS 91

>pdb|1MID|A Chain A, Non-Specific Lipid Transfer Protein 1 From Barley In Complex With L-Alfa-Lysophosphatidylcholine, Laudoyl Length = 91

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 53  IACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSLG 112
           + CG VD+K   C+ +  G  P P+  CC+G++ L    ++  D++ +C CLK  A+  G
Sbjct: 1   LNCGQVDSKMKPCLTYVQG-GPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIAR--G 57
Query: 113 VQDRFLSK---IPSACGIKVGFPVSTATNCETIH 143
           + +  L+    IPS C + V + +S   +C  I+
Sbjct: 58  IHNLNLNNAASIPSKCNVNVPYTISPDIDCSRIY 91

>pdb|1BE2|A Chain A, Lipid Transfer Protein Complexed With Palmitate, Nmr, 10 Structures Length = 91

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 53  IACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSLG 112
           + CG VD+K   C+ +  G  P P+  CC+G++ L    ++  D++ +C CLK  A+  G
Sbjct: 1   LNCGQVDSKMKPCLTYVQG-GPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIAR--G 57
Query: 113 VQDRFLSK---IPSACGIKVGFPVSTATNCETI 142
           + +  L+    IPS C + V + +S   +C  I
Sbjct: 58  IHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 90

>pdb|1T12|A Chain A, Solution Structure Of A New Ltp1 Length = 91

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 52  AIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL 111
           AI CG V +  A C+ +   +   P   CC G++ L  S +T +D++  C CLK+ A ++
Sbjct: 1   AITCGQVTSNLAPCLAYL--RNTGPLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAI 58
Query: 112 -GVQDRFLSKIPSACGIKVGFPVSTATNCETIH 143
            G+     + +PS CG+ + + +S +T+C  + 
Sbjct: 59  SGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 91

>pdb|1BWO|A Chain A, The Crystal Structure Of Wheat Non-Specific Transfer Protein Complexed With Two Molecules Of Phospholipid At 2.1 A Resolution Length = 90

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 53  IACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL- 111
           I CG VD+    C+ +  G  P P+  CC G++ L    ++  D+++ C CLK  A+ + 
Sbjct: 1   IDCGHVDSLVRPCLSYVQG-GPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH 59
Query: 112 GVQDRFLSKIPSACGIKVGFPVSTATNCETI 142
            + +     IP  CG+ + + +S   +C  +
Sbjct: 60  NLNEDNARSIPPKCGVNLPYTISLNIDCSRV 90

>pdb|1CZ2|A Chain A, Solution Structure Of Wheat Ns-Ltp Complexed With Prostaglandin B2 Length = 90

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 55  CGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL-GV 113
           CG VD+    C+ +  G  P P+  CC G++ L    ++  D+++ C CLK  A+ +  +
Sbjct: 3   CGHVDSLVRPCLSYVQG-GPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNL 61
Query: 114 QDRFLSKIPSACGIKVGFPVSTATNCETI 142
            +     IP  CG+ + + +S   +C  +
Sbjct: 62  NEDNARSIPPKCGVNLPYTISLNIDCSRV 90

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	143
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	2e-26
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	2e-23
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	1e-22
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	1e-22
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	3e-22

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A* Length = 93

 Score = 94.1 bits (234), Expect = 2e-26
 Identities = 33/93 (35%), Positives = 57/93 (61%), Gaps = 1/93 (1%)

Query: 52  AIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL 111
           AI+CG V +  A C+ +A G+   P++ CCSG++ L  + +T  D++A C CLK  A  +
Sbjct: 1   AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60

Query: 112 -GVQDRFLSKIPSACGIKVGFPVSTATNCETIH 143
            G+     + IPS CG+ + + +ST+T+C  ++
Sbjct: 61  SGLNAGNAASIPSKCGVSIPYTISTSTDCSRVN 93

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum} Length = 91

 Score = 86.8 bits (215), Expect = 2e-23
 Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 3/93 (3%)

Query: 52  AIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL 111
           AI CG V +  A C+ +     P     CC G++ L  S +T +D++  C CLK+ A ++
Sbjct: 1   AITCGQVTSNLAPCLAYLRNTGPLG--RCCGGVKALVNSARTTEDRQIACTCLKSAAGAI 58

Query: 112 -GVQDRFLSKIPSACGIKVGFPVSTATNCETIH 143
            G+     + +PS CG+ + + +S +T+C  + 
Sbjct: 59  SGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 91

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A* Length = 92

 Score = 84.5 bits (209), Expect = 1e-22
 Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 2/91 (2%)

Query: 53  IACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL- 111
           I CG V +  A C+ +  G    P  ACC+G++ +    +T  D++A C CLK  + S+ 
Sbjct: 2   ITCGQVSSSLAPCIPYVRGGGAVP-PACCNGIRNVNNLARTTPDRQAACNCLKQLSASVP 60

Query: 112 GVQDRFLSKIPSACGIKVGFPVSTATNCETI 142
           GV     + +P  CG+ + + +S +TNC T+
Sbjct: 61  GVNPNNAAALPGKCGVSIPYKISASTNCATV 91

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var} Length = 91

 Score = 84.2 bits (208), Expect = 1e-22
 Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 2/92 (2%)

Query: 53  IACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL- 111
           + CG V    A C+GF       P  +CC+G++ +  S +T  D++A+C CLKA A ++ 
Sbjct: 1   MTCGQVQGNLAQCIGFLQKGGVVP-PSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR 59

Query: 112 GVQDRFLSKIPSACGIKVGFPVSTATNCETIH 143
           G+       +P  CG+ + + +ST+TNC +I+
Sbjct: 60  GINPNNAEALPGKCGVNIPYKISTSTNCNSIN 91

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A* Length = 90

 Score = 83.4 bits (206), Expect = 3e-22
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 53  IACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL- 111
           I CG VD+    C+ +  G  P P+  CC G++ L    ++  D+++ C CLK  A+ + 
Sbjct: 1   IDCGHVDSLVRPCLSYVQG-GPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH 59

Query: 112 GVQDRFLSKIPSACGIKVGFPVSTATNCETI 142
            + +     IP  CG+ + + +S   +C  +
Sbjct: 60  NLNEDNARSIPPKCGVNLPYTISLNIDCSRV 90

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
2ljo_A	93	Non-specific lipid-transfer protein 2; lipid trans	99.96
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	99.96
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	99.95
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	99.95
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	99.95
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	99.95
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	99.58
1n89_A	67	Lipid transfer protein; lipid transport; HET: PGM;	99.41
1l6h_A	69	LTP2, non-specific lipid transfer protein; NSLTP2,	99.41
1hyp_A	80	Hydrophobic protein from soybean; hydrophobic SEED	93.25
3ob4_A	500	Conglutin, maltose ABC transporter periplasmic pro	88.99

>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}

Probab=99.96  E-value=1.5e-31  Score=186.66  Aligned_cols=91  Identities=35%  Similarity=0.852  Sum_probs=85.4

Q ss_pred             ccCchhhhhccccchhhhcCCCCCCcHhhhHHHHhhhhhhcccccccccceeeccccccC-CCChHHHhhccccCCCCCC
Q 045117           52 AIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL-GVQDRFLSKIPSACGIKVG  130 (143)
Q Consensus        52 ~~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~~-~in~~ra~~LP~~Cgv~~p  130 (143)
                      +++|+++...|.||++|++| ++.|++.||+|+++|++.++|+.|||++|+|+++.+..+ +||.++|.+||++|||++|
T Consensus         1 AisC~~v~~~L~pCl~Yv~g-~~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~~LP~~CgV~~p   79 (93)
T 2ljo_A            1 AISCGAVTSDLSPCLTYLTG-GPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIP   79 (93)
T ss_dssp             CCSSHHHHHHHHHHHHHHTT-SSCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHHHHHHHHTCCCS
T ss_pred             CCCHHHHHHHHHhHHHHHcC-CCCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHHhhhHhcCCCCC
Confidence            47899999999999999998 457999999999999999999999999999999876666 8999999999999999999


Q ss_pred             CCCCCCCCCCCCC
Q 045117          131 FPVSTATNCETIH  143 (143)
Q Consensus       131 ~pIs~~~dC~~I~  143 (143)
                      ||||+++||++|+
T Consensus        80 ~~Is~~~dC~~v~   92 (93)
T 2ljo_A           80 YKISTTTNCNTVK   92 (93)
T ss_dssp             SCCSTTCCGGGCC
T ss_pred             CCCCCCCCCCCCC
Confidence            9999999999996

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*

Probab=99.96  E-value=2.3e-30  Score=180.40  Aligned_cols=92  Identities=36%  Similarity=0.870  Sum_probs=86.1

Q ss_pred             ccCchhhhhccccchhhhcCCCCCCcHhhhHHHHhhhhhhcccccccccceeeccccccC-CCChHHHhhccccCCCCCC
Q 045117           52 AIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL-GVQDRFLSKIPSACGIKVG  130 (143)
Q Consensus        52 ~~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~~-~in~~ra~~LP~~Cgv~~p  130 (143)
                      +++|+++...|.||++|++|+++.|+++||+|++++++.|+|+.|||..|+|++....++ +||.++|++||++||+++|
T Consensus         1 a~~C~~v~~~L~pCl~y~~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~in~~~A~~LP~~C~v~~p   80 (93)
T 1afh_A            1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIP   80 (93)
T ss_dssp             CCSSHHHHHHHGGGHHHHTTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHCCCS
T ss_pred             CCChHHHHHhccCcHHHHcCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCcCHHHHHHHHHHcCCCCC
Confidence            368999999999999999997778999999999999999999999999999998766677 8999999999999999999


Q ss_pred             CCCCCCCCCCCCC
Q 045117          131 FPVSTATNCETIH  143 (143)
Q Consensus       131 ~pIs~~~dC~~I~  143 (143)
                      ||||+++||++|+
T Consensus        81 ~~is~~~dC~~v~   93 (93)
T 1afh_A           81 YTISTSTDCSRVN   93 (93)
T ss_dssp             SCCSTTCCSSSCC
T ss_pred             CCCCCCCCCccCC
Confidence            9999999999996

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}

Probab=99.95  E-value=5e-30  Score=178.16  Aligned_cols=90  Identities=31%  Similarity=0.798  Sum_probs=84.2

Q ss_pred             ccCchhhhhccccchhhhcCCCCCCcHhhhHHHHhhhhhhcccccccccceeeccccccC-CCChHHHhhccccCCCCCC
Q 045117           52 AIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL-GVQDRFLSKIPSACGIKVG  130 (143)
Q Consensus        52 ~~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~~-~in~~ra~~LP~~Cgv~~p  130 (143)
                      +++|+++...|.||++|++|+++ |+ +||+|++++++.|+|+.||+..|+|+++.+.++ +||.++|++||++||+++|
T Consensus         1 a~~C~~v~~~L~pCl~y~~~~~~-P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~~p   78 (91)
T 1t12_A            1 AITCGQVTSNLAPCLAYLRNTGP-LG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIP   78 (91)
T ss_dssp             CCCHHHHHHHTHHHHHHHTTSSC-CT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTCCCS
T ss_pred             CCChHHHHHhccCcHHHHcCCCC-hH-HHHHHHHHHHhhccCCCCCCccCCCccccccccCCcChhHHHHHHHHcCCCCC
Confidence            36899999999999999999777 88 999999999999999999999999998766677 8999999999999999999


Q ss_pred             CCCCCCCCCCCCC
Q 045117          131 FPVSTATNCETIH  143 (143)
Q Consensus       131 ~pIs~~~dC~~I~  143 (143)
                      ||||+++||++|+
T Consensus        79 ~~is~~~dC~~v~   91 (91)
T 1t12_A           79 YKISPSTDCSKVQ   91 (91)
T ss_dssp             SCSSSSSCCTTCC
T ss_pred             CCCCCCCCCccCC
Confidence            9999999999996

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}

Probab=99.95  E-value=1.2e-29  Score=176.05  Aligned_cols=90  Identities=33%  Similarity=0.835  Sum_probs=84.2

Q ss_pred             cCchhhhhccccchhhhcCCCCCCcHhhhHHHHhhhhhhcccccccccceeeccccccC-CCChHHHhhccccCCCCCCC
Q 045117           53 IACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL-GVQDRFLSKIPSACGIKVGF  131 (143)
Q Consensus        53 ~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~~-~in~~ra~~LP~~Cgv~~p~  131 (143)
                      ++|+++...|.||++|++++++ |+++||++++++++.|+|+.|+|..|+|+++.+.++ +||.++|++||++||+++||
T Consensus         1 i~C~~v~~~L~pCl~yv~~~~~-Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~~~~in~~~A~~LP~~Cgv~~p~   79 (91)
T 1siy_A            1 MTCGQVQGNLAQCIGFLQKGGV-VPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPY   79 (91)
T ss_dssp             CCTTTTHHHHHHHHHHHTSCSC-CCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHTCCCSS
T ss_pred             CCHHHHHHhccCcHHHHhCCCC-CcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccccCCcCHHHHHHHHHHcCCCCCC
Confidence            4799999999999999998665 999999999999999999999999999998777777 89999999999999999999


Q ss_pred             CCCCCCCCCCCC
Q 045117          132 PVSTATNCETIH  143 (143)
Q Consensus       132 pIs~~~dC~~I~  143 (143)
                      |||+++||++|+
T Consensus        80 ~is~~~dC~~v~   91 (91)
T 1siy_A           80 KISTSTNCNSIN   91 (91)
T ss_dssp             CSCTTSCSSTTC
T ss_pred             CCCCCCCCccCC
Confidence            999999999996

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*

Probab=99.95  E-value=8e-30  Score=176.74  Aligned_cols=89  Identities=27%  Similarity=0.772  Sum_probs=83.5

Q ss_pred             cCchhhhhccccchhhhcCCCCCCcHhhhHHHHhhhhhhcccccccccceeeccccccC-CCChHHHhhccccCCCCCCC
Q 045117           53 IACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL-GVQDRFLSKIPSACGIKVGF  131 (143)
Q Consensus        53 ~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~~-~in~~ra~~LP~~Cgv~~p~  131 (143)
                      ++|+++...|.||++|++|+++ |+++||+|++++++.|+|+.|||..|+|+++.+.++ +||.++|++||++||+++||
T Consensus         1 i~C~~v~~~L~pCl~y~~~~~~-Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~~p~   79 (90)
T 1bwo_A            1 IDCGHVDSLVRPCLSYVQGGPG-PSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPY   79 (90)
T ss_dssp             CCHHHHHHHHGGGHHHHTTCSC-CCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTCCHHHHHTHHHHHTCCCSS
T ss_pred             CCHHHHHHhhcccHHHHcCCCC-CCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCcCHHHHHHHHHHcCCCCCC
Confidence            4799999999999999998665 999999999999999999999999999998777777 89999999999999999999


Q ss_pred             CCCCCCCCCCC
Q 045117          132 PVSTATNCETI  142 (143)
Q Consensus       132 pIs~~~dC~~I  142 (143)
                      |||+++||++|
T Consensus        80 ~is~~~dC~~v   90 (90)
T 1bwo_A           80 TISLNIDCSRV   90 (90)
T ss_dssp             CCCTTCCGGGC
T ss_pred             CCCCCCCCCCC
Confidence            99999999987

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*

Probab=99.95  E-value=3.8e-29  Score=173.90  Aligned_cols=90  Identities=32%  Similarity=0.784  Sum_probs=83.8

Q ss_pred             cCchhhhhccccchhhhcCCCCCCcHhhhHHHHhhhhhhcccccccccceeeccccccC-CCChHHHhhccccCCCCCCC
Q 045117           53 IACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL-GVQDRFLSKIPSACGIKVGF  131 (143)
Q Consensus        53 ~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~~-~in~~ra~~LP~~Cgv~~p~  131 (143)
                      ++|+++...|.||++|+++++ .|+++||+++++|++.|+|+.|++..|+|++....++ +||.++|.+||++||+++||
T Consensus         2 ~~C~~v~~~L~pCl~y~~~~~-~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~~in~~~A~~LP~~Cgv~~p~   80 (92)
T 2alg_A            2 ITCGQVSSSLAPCIPYVRGGG-AVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVSIPY   80 (92)
T ss_dssp             CCHHHHHHHHGGGHHHHHHCS-CCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTTCCCSS
T ss_pred             CChHHHHHhccCcHHHHcCCC-CCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccCccChHHHHHHHHHcCCCCCC
Confidence            679999999999999999854 6889999999999999999999999999998766677 89999999999999999999


Q ss_pred             CCCCCCCCCCCC
Q 045117          132 PVSTATNCETIH  143 (143)
Q Consensus       132 pIs~~~dC~~I~  143 (143)
                      |||+++||++|+
T Consensus        81 ~is~~~dC~~v~   92 (92)
T 2alg_A           81 KISASTNCATVK   92 (92)
T ss_dssp             CSSTTSCGGGCC
T ss_pred             CCCCCCCCccCC
Confidence            999999999986

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}

Probab=99.58  E-value=1.9e-16  Score=106.10  Aligned_cols=70  Identities=26%  Similarity=0.558  Sum_probs=57.8

Q ss_pred             ccCchhhhhccccchhhhcCC-CCCCcHhhhHHHHhhhhhhcccccccccceeeccc---cccCCCChHHHhhccccCCC
Q 045117           52 AIACGTVDAKAAACVGFATGK-APTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAG---AKSLGVQDRFLSKIPSACGI  127 (143)
Q Consensus        52 ~~~C~~v~~~L~pCl~yl~g~-~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~---~~~~~in~~ra~~LP~~Cgv  127 (143)
                      ..+|+++...|.||++|++++ .+.||++||+++|+.        |+  .|+|.+..   ..+++||.++|+.||++||+
T Consensus         2 ~~~C~~~~~~L~pC~~yv~~~~~~~Ps~~CC~~lk~~--------~~--~ClC~~~~~~~~~~~gin~~~A~~LP~~Cgv   71 (77)
T 2rkn_A            2 IDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA--------DF--ACLCGYKNSPWLGSFGVDPELASALPKQCGL   71 (77)
T ss_dssp             CCBTTBCHHHHHHHGGGGBSSSCCCCCHHHHHHHTTC--------CH--HHHHTTTTCHHHHHHTBCHHHHHHHHHHTTC
T ss_pred             cchHHhHHHhHhhCHHHHcCCCCCCCCHHHHHHHHhc--------Cc--CCcCcccCCcchhhcCcCHHHHHHHHHHcCC
Confidence            467999999999999999983 468999999999872        55  67776433   34458999999999999999


Q ss_pred             CCCC
Q 045117          128 KVGF  131 (143)
Q Consensus       128 ~~p~  131 (143)
                      ++|+
T Consensus        72 ~~p~   75 (77)
T 2rkn_A           72 ANAP   75 (77)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            9886

>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*

Probab=99.41  E-value=1.8e-14  Score=94.35  Aligned_cols=58  Identities=21%  Similarity=0.465  Sum_probs=46.8

Q ss_pred             ccccchhhhcCCCCCCcHhhhHHHHhhhhhhccccccccccee--eccccccCCCChHHHhhccccCCCCCC
Q 045117           61 KAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRC--LKAGAKSLGVQDRFLSKIPSACGIKVG  130 (143)
Q Consensus        61 ~L~pCl~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~C--lk~~~~~~~in~~ra~~LP~~Cgv~~p  130 (143)
                      .|.||++|++++ +.||++||+++|+.           ..|+|  +++.....+||.++|++||++|||++|
T Consensus         6 ~L~pC~~~v~~~-~~Ps~~CC~~lk~~-----------~~ClC~~~k~~~~~~~in~~~A~~Lp~~Cgv~~P   65 (67)
T 1n89_A            6 QLAVCASAILSG-AKPSGECCGNLRAQ-----------QGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             TTHHHHHHHTTC-CCCCHHHHHHHHHH-----------SSHHHHGGGCSTTHHHHTCHHHHHHHHHHTSCCS
T ss_pred             hcccCHHHHcCC-CCCCHHHHHhhCCC-----------CCCCCccccCcccccccCHHHHHHHHHHcCCCCC
Confidence            789999999984 68999999999862           35666  665432226999999999999999876

>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1

Probab=99.41  E-value=2.6e-14  Score=94.05  Aligned_cols=63  Identities=32%  Similarity=0.564  Sum_probs=49.5

Q ss_pred             CchhhhhccccchhhhcCCCCCCcHhhhHHHHhhhhhhccccccccccee--eccccccCCCChHHHhhccccCCCCCC
Q 045117           54 ACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRC--LKAGAKSLGVQDRFLSKIPSACGIKVG  130 (143)
Q Consensus        54 ~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~C--lk~~~~~~~in~~ra~~LP~~Cgv~~p  130 (143)
                      +|+..  .|.||++|++++ ..||++||+++|+.           ..|+|  +++.....+||.++|++||++||+++|
T Consensus         2 ~C~~~--~L~pC~~~v~~~-~~Ps~~CC~~lk~~-----------~~ClC~~~k~~~~~~~in~~~A~~Lp~~Cgv~~P   66 (69)
T 1l6h_A            2 GCNAG--QLTVCTGAIAGG-ARPTAACCSSLRAQ-----------QGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALP   66 (69)
T ss_dssp             CSTTT--THHHHHHHHTTC-CSTTHHHHHHHHHH-----------HHHHHHHTTCSSHHHHTTTTTGGGCCCCCSSCSC
T ss_pred             CCChh--hcccCHHHHcCC-CCCCHHHHHhhCCC-----------CCCCCccccCcccccccCHHHHHHHHHHcCCCCC
Confidence            46654  789999999984 57999999999872           35666  665432226999999999999999876

>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1

Probab=93.25  E-value=0.039  Score=36.85  Aligned_cols=73  Identities=18%  Similarity=0.460  Sum_probs=48.9

Q ss_pred             cCchhhhhccccchhhhcCCCCCCcHhhhHHHHhhhhhhcccccccccceeeccccccCCCChHHHhh-ccccCCCCCCC
Q 045117           53 IACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSLGVQDRFLSK-IPSACGIKVGF  131 (143)
Q Consensus        53 ~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~~~in~~ra~~-LP~~Cgv~~p~  131 (143)
                      .+|.    +|.-|.+-+.| ...|..+||+-++.+.+.      ..+.|+|-.-.+.++ +|.+.+.+ |-..||-..| 
T Consensus         6 ~~CP----kLgvCanvL~g-~~~~~~~CC~Ll~GL~dl------eAAvCLCtaik~Lgi-lnlpv~L~llln~Cgk~~P-   72 (80)
T 1hyp_A            6 PSCP----DLSICLNILGG-SLGTVDDCCALIGGLGDI------EAIVCLCIQLRALGI-LNLNRNLQLILNSCGRSYP-   72 (80)
T ss_dssp             CCSC----CCGGGGGGGGT-CCTTHHHHHHHHHTSCHH------HHHHHHHHHHHHHTC-SCHHHHHHHHHHHTTCSSC-
T ss_pred             CCCC----chhHHHHHhCc-CCCCCCccchhhhCcchh------hhhhhhhhhccccce-eecChhHHHHHHHhCCcCc-
Confidence            3576    67889998854 334778999999998652      236788852112233 56666655 5578999988 


Q ss_pred             CCCCCCCCCC
Q 045117          132 PVSTATNCET  141 (143)
Q Consensus       132 pIs~~~dC~~  141 (143)
                         +.|.|..
T Consensus        73 ---~gF~C~~   79 (80)
T 1hyp_A           73 ---SNATCPR   79 (80)
T ss_dssp             ---CCCCCSC
T ss_pred             ---CCCCCCC
Confidence               6777753

>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}

Probab=88.99  E-value=0.021  Score=48.24  Aligned_cols=52  Identities=21%  Similarity=0.602  Sum_probs=31.5

Q ss_pred             HhhhHHHHhhhhhhcccccccccceeecccccc----C------CCChHHHhhccccCCCCCC--CCCCC
Q 045117           78 SACCSGLQQLAQSVKTVDDKKAICRCLKAGAKS----L------GVQDRFLSKIPSACGIKVG--FPVST  135 (143)
Q Consensus        78 ~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~----~------~in~~ra~~LP~~Cgv~~p--~pIs~  135 (143)
                      .+||+.++.+.+      .++|-|.-++..+..    .      ..=..+|..||..||+..|  .+|++
T Consensus       429 ~~cc~~l~~~~~------~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~c~~~~~~~c~~~~  492 (500)
T 3ob4_A          429 ERCCNELNEFEN------NQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAPQRCDLDV  492 (500)
T ss_dssp             HHHHHHHGGGTT------CHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHTHHHHTTCCCCSCCCCC-
T ss_pred             HHHHHHHHhCCc------ccccccHHHHHHHHHHHHHhhhHHHHHHHHHHHhhCchhcCCCCCccCCccC
Confidence            689999888721      134555555433221    1      1113459999999999976  56655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	143
d1fk5a_	93	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	4e-25
d1mida_	91	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	3e-23

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]} Length = 93

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

 Score = 89.9 bits (223), Expect = 4e-25
 Identities = 33/93 (35%), Positives = 57/93 (61%), Gaps = 1/93 (1%)

Query: 52  AIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL 111
           AI+CG V +  A C+ +A G+   P++ CCSG++ L  + +T  D++A C CLK  A  +
Sbjct: 1   AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60

Query: 112 -GVQDRFLSKIPSACGIKVGFPVSTATNCETIH 143
            G+     + IPS CG+ + + +ST+T+C  ++
Sbjct: 61  SGLNAGNAASIPSKCGVSIPYTISTSTDCSRVN 93

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 91

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 84.9 bits (210), Expect = 3e-23
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 53  IACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKS-L 111
           + CG VD+K   C+ +  G  P P+  CC+G++ L    ++  D++ +C CLK  A+   
Sbjct: 1   LNCGQVDSKMKPCLTYVQGG-PGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIH 59

Query: 112 GVQDRFLSKIPSACGIKVGFPVSTATNCETIH 143
            +     + IPS C + V + +S   +C  I+
Sbjct: 60  NLNLNNAASIPSKCNVNVPYTISPDIDCSRIY 91

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	143
d1fk5a_	93	Plant non-specific lipid-transfer protein (ns-LTP,	99.96
d1mida_	91	Plant non-specific lipid-transfer protein (ns-LTP,	99.96
d1tuka1	67	Non-specific lipid-transfer protein homologue (ns-	98.97
d1l6ha_	69	Non-specific lipid-transfer protein homologue (ns-	98.95
g1pnb.1	106	Napin BNIb {Rape (Brassica napus) [TaxId: 3708]}	85.42
d1s6da_	103	Methionine-rich 2S protein (albumin 8) {Common sun	84.34
d1hypa_	75	Soybean hydrophobic protein {Soybean (Glycine max)	84.28

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.96  E-value=2.3e-31  Score=183.92  Aligned_cols=92  Identities=36%  Similarity=0.870  Sum_probs=86.6

Q ss_pred             ccCchhhhhccccchhhhcCCCCCCcHhhhHHHHhhhhhhcccccccccceeeccccccC-CCChHHHhhccccCCCCCC
Q 045117           52 AIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL-GVQDRFLSKIPSACGIKVG  130 (143)
Q Consensus        52 ~~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~~-~in~~ra~~LP~~Cgv~~p  130 (143)
                      +++|+++...|.||++|++|++..|++.||+|+++|+++++|+.||+++|+|+++....+ +||.+|+.+||++||+++|
T Consensus         1 Ai~C~~v~~~l~pCl~Yltg~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~l~   80 (93)
T d1fk5a_           1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIP   80 (93)
T ss_dssp             CCCHHHHHHHHGGGHHHHTTCSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCCCS
T ss_pred             CCCHHHHHHHhhhhHHHHhCCCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhhHhcCCCCC
Confidence            478999999999999999997789999999999999999999999999999998766655 8999999999999999999


Q ss_pred             CCCCCCCCCCCCC
Q 045117          131 FPVSTATNCETIH  143 (143)
Q Consensus       131 ~pIs~~~dC~~I~  143 (143)
                      ||||+++||++|+
T Consensus        81 ~pis~~~dCs~i~   93 (93)
T d1fk5a_          81 YTISTSTDCSRVN   93 (93)
T ss_dssp             SCCSTTCCGGGCC
T ss_pred             CCCCCCCCCCcCC
Confidence            9999999999996

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.96  E-value=1.5e-30  Score=179.25  Aligned_cols=90  Identities=30%  Similarity=0.790  Sum_probs=84.1

Q ss_pred             cCchhhhhccccchhhhcCCCCCCcHhhhHHHHhhhhhhcccccccccceeeccccccC-CCChHHHhhccccCCCCCCC
Q 045117           53 IACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL-GVQDRFLSKIPSACGIKVGF  131 (143)
Q Consensus        53 ~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~~-~in~~ra~~LP~~Cgv~~p~  131 (143)
                      ++|+++...|.||++|++| ++.|++.||+|+++|++.++|+.|++++|+|+++.+..+ +||.+||.+||++||+++||
T Consensus         1 i~C~~v~~~l~pCl~Yl~g-~~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~~p~   79 (91)
T d1mida_           1 LNCGQVDSKMKPCLTYVQG-GPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPY   79 (91)
T ss_dssp             CCHHHHHHHHGGGHHHHTT-CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCCCCS
T ss_pred             CCHHHHHHHHHhhHHHHcC-CCCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHHHHhchHhcCCCCCC
Confidence            4799999999999999998 468999999999999999999999999999998766555 79999999999999999999


Q ss_pred             CCCCCCCCCCCC
Q 045117          132 PVSTATNCETIH  143 (143)
Q Consensus       132 pIs~~~dC~~I~  143 (143)
                      |||+++||++|+
T Consensus        80 pis~~~dC~~i~   91 (91)
T d1mida_          80 TISPDIDCSRIY   91 (91)
T ss_dssp             CCCTTCCGGGCC
T ss_pred             CCCCCCCCCCCC
Confidence            999999999996

>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Triticum turgidum [TaxId: 4571]

Probab=98.97  E-value=4.4e-11  Score=76.63  Aligned_cols=64  Identities=19%  Similarity=0.492  Sum_probs=51.6

Q ss_pred             chhhhhccccchhhhcCCCCCCcHhhhHHHHhhhhhhcccccccccceeeccccccCCCChHHHhhccccCCCCCC
Q 045117           55 CGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSLGVQDRFLSKIPSACGIKVG  130 (143)
Q Consensus        55 C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~~~in~~ra~~LP~~Cgv~~p  130 (143)
                      |+..  .|.||++.+++ +..||.+||+.+|+         ++.++|+++++....-.||..+|+.+-+.|||++|
T Consensus         2 C~p~--~L~~C~~Ai~~-g~~PS~~CC~kLke---------Q~~ClC~Y~kdP~~~~yv~spnarkv~~aCgvp~P   65 (67)
T d1tuka1           2 CQAS--QLAVCASAILS-GAKPSGECCGNLRA---------QQGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             CCGG--GGGGGHHHHHH-CCCCCHHHHHHHHH---------HGGGHHHHTTCTTTHHHHTSHHHHHHHHHTTCCCC
T ss_pred             CChh--hccccHHHHhc-CCCCcHHHHHHHHh---------cCCccceecCCccHHHHcCCHHHHHHHHhcCCCCC
Confidence            6655  79999999998 56999999998777         45567777775533337999999999999999987

>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.95  E-value=4.6e-11  Score=76.96  Aligned_cols=65  Identities=29%  Similarity=0.563  Sum_probs=52.4

Q ss_pred             CchhhhhccccchhhhcCCCCCCcHhhhHHHHhhhhhhcccccccccceeeccccccCCCChHHHhhccccCCCCCC
Q 045117           54 ACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSLGVQDRFLSKIPSACGIKVG  130 (143)
Q Consensus        54 ~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~~~in~~ra~~LP~~Cgv~~p  130 (143)
                      .|+..  .|.||++.+++ +..||.+||+.+|+         ++.++|.++++....-.||..+|+.+-..|||++|
T Consensus         2 ~C~p~--~L~~C~~ai~~-g~~PS~~CC~kLke---------Q~~ClC~Y~k~P~~~~yv~spnarkv~~aCgvp~P   66 (69)
T d1l6ha_           2 GCNAG--QLTVCTGAIAG-GARPTAACCSSLRA---------QQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALP   66 (69)
T ss_dssp             CSTTT--THHHHHHHHTT-CCSTTHHHHHHHHH---------HHHHHHHHTTCSSHHHHTTTTTGGGCCCCCSSCSC
T ss_pred             CCChh--hccccHHHHhC-CCCCcHHHHHHHHh---------cCCccceeccCccHHHHcCCHHHHHHHHhcCCCCC
Confidence            47765  79999999998 56799999998777         44567777776533337999999999999999988

>d1s6da_ a.52.1.3 (A:) Methionine-rich 2S protein (albumin 8) {Common sunflower (Helianthus annuus) [TaxId: 4232]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Seed storage protein, 2S albumin
domain: Methionine-rich 2S protein (albumin 8)
species: Common sunflower (Helianthus annuus) [TaxId: 4232]

Probab=84.34  E-value=0.15  Score=33.81  Aligned_cols=69  Identities=16%  Similarity=0.306  Sum_probs=43.7

Q ss_pred             ccCchhhh---hccccchhhhcCC-----CC------CCc-HhhhHHHHhhhhhhcccccccccceeeccccccC----C
Q 045117           52 AIACGTVD---AKAAACVGFATGK-----AP------TPT-SACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL----G  112 (143)
Q Consensus        52 ~~~C~~v~---~~L~pCl~yl~g~-----~~------~Ps-~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~~----~  112 (143)
                      ...|-.-+   ..|..|-.||.-.     ..      .+. ..||+.++.+        |.+|-|.-++.++..-    .
T Consensus         8 ~q~C~~q~q~qq~L~~Cq~Yl~q~~~~~~~~~~~~~~e~~~~~CC~qL~q~--------~~~CrC~~L~~avq~q~~q~~   79 (103)
T d1s6da_           8 ESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL--------DEKCMCPAIMMMLNEPMWIRM   79 (103)
T ss_dssp             SSSHHHHHHHTCSTTHHHHHHTTTTSSCCCCSSSCCCCCCSHHHHHHHHHS--------CGGGSSHHHHHHTTSTTCSST
T ss_pred             cccCHHHHHHhHhHHHHHHHHHHHHhccCCCCCccCchHHHHHHHHHHHcC--------CCCCcCHHHHHHHHHHHhHHH
Confidence            44576332   3699999999531     11      122 6799999987        4555555565433321    1


Q ss_pred             C--ChHHHhhccccCCCC
Q 045117          113 V--QDRFLSKIPSACGIK  128 (143)
Q Consensus       113 i--n~~ra~~LP~~Cgv~  128 (143)
                      +  -...|..||+.||+.
T Consensus        80 ~~~~~q~Ak~LPs~C~i~   97 (103)
T d1s6da_          80 RDQVMSMAHNLPIECNLM   97 (103)
T ss_dssp             HHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHhChHhcCCC
Confidence            2  246799999999997

>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Soybean hydrophobic protein
species: Soybean (Glycine max) [TaxId: 3847]

Probab=84.28  E-value=0.23  Score=31.05  Aligned_cols=69  Identities=17%  Similarity=0.446  Sum_probs=43.6

Q ss_pred             ccccchhhhcCCCCCCcHhhhHHHHhhhhhhcccccccccceeeccccccCCCChHHHhh-ccccCCCCCCCCCCCCCCC
Q 045117           61 KAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSLGVQDRFLSK-IPSACGIKVGFPVSTATNC  139 (143)
Q Consensus        61 ~L~pCl~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~~~in~~ra~~-LP~~Cgv~~p~pIs~~~dC  139 (143)
                      .+.-|.+-+.+ .-.+...||.-++.+.+.      ..++|+|-.-.+..+ +|...+.. |-..||-..|    ++|.|
T Consensus         5 Klg~C~nvLg~-~~~~~~~CC~Ll~GL~dl------eAAvCLCtaika~~l-lnvpv~l~llln~Cgk~~P----~gF~C   72 (75)
T d1hypa_           5 DLSICLNILGG-SLGTVDDCCALIGGLGDI------EAIVCLCIQLRALGI-LNLNRNLQLILNSCGRSYP----SNATC   72 (75)
T ss_dssp             CCGGGGGGGGT-CCTTHHHHHHHHHTSCHH------HHHHHHHHHHHHHTC-SCHHHHHHHHHHHTTCSSC----CCCCC
T ss_pred             chhhHHHHhcC-ccCCCCCcchHHhhHHHH------HHHHHHHHHHHHhhh-ccccchHHHHHHHcCCcCc----CCCcC
Confidence            56678887765 334678999999988653      236788852112223 44443333 5568999888    67777


Q ss_pred             CC
Q 045117          140 ET  141 (143)
Q Consensus       140 ~~  141 (143)
                      -+
T Consensus        73 P~   74 (75)
T d1hypa_          73 PR   74 (75)
T ss_dssp             SC
T ss_pred             CC
Confidence            54