Citrus Sinensis ID: 045118

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-
Protein Sequence
LKNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQPELRQRLRAFEDMEWRPEMLDLEPFDRSKKINIT
Secondary Structure (PSIPRED)
ccccEEEcEEccccccHHHHcccccccEEEEEccccccHHHHHHHccccccccEEEEEEccccccccccccccccccccccEEEEEccccccccHHHHcccccccEEEEEccEEcccEEEEEcccccccccEEEEcccccccEEEEEcccccccccEEEccccccccccccccccccccEEEEEcccHHHHHHHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHcccccccccHHHHHHHHHccEEEEEEEcccccHHHHHHHHHHHHccEEEEEccccccccccccccccccccccEEEEEEccccccccHHHHHHcccccEEEEEcccccccEEEEEcccccccHEEEEEccHHHHHEEEEcccccccccEEEEccHHHHHHccccHHHHHHHcEEEEccccHHHHHHHccccccEEEEEccEEEEEEcccccccc
Coil and Loop (DISEMBL)
LKNLIFIsalhpssctpdilgrlpnvrtfrisgdlsyyhsgvskslcklhklECLKLVNKGKMWQLSRMIlseykfppsltqlslsntelmedpmptleklphleVLKLKQNSYLERklacvgcssfsqlKILHLKSMLWLEewtmgagampkleslilnpcaylRKLPEELWCIKSLCklelhwpqpeLRQRLRAFEdmewrpemldlepfdrskkinit
Flexible Loop (DISEMBL)
LKNLIFIsalhpssctpdilgRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKlelhwpqpELRQRLRAFEDMEWrpemldlepfdrskkinit
Low Complexity Region (SEG)
LKNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVskslcklhkleclklVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQPELRQRLRAFEDMEWRPEMLDLEPFDRSKKINIT
Disordered region (IsUnstruct)
***LIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLT******************KLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQPELRQRLRAFEDMEW*******************
Disordered Region (DISOPRED)
LKNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQPELRQRLRAFEDMEWRPEMLDLEPFDRSKKINI*
Disordered Region (DISEMBL)
LKNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQPELRQRLRAFEDMEWRPEMLDLEPFDRSKKINIT
Disordered Region (DISPRO)
LKNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQPELRQRLRAFEDMEWRPEMLDLEPFDRSK*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LKNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQPELRQRLRAFEDMEWRPEMLDLEPFDRSKKINIT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	221	2.2.26 [Sep-21-2011]
P59584	910	Disease resistance protei	yes	no	0.873	0.212	0.277	6e-16
Q9FJB5	901	Disease resistance RPP8-l	yes	no	0.891	0.218	0.276	2e-15
Q8W4J9	908	Disease resistance protei	no	no	0.561	0.136	0.352	6e-14
Q9FJK8	908	Probable disease resistan	no	no	0.561	0.136	0.352	7e-14
Q9XIF0	906	Putative disease resistan	no	no	0.877	0.214	0.330	1e-13
Q8W474	907	Probable disease resistan	no	no	0.787	0.191	0.335	2e-13
P0C8S1	906	Probable disease resistan	no	no	0.552	0.134	0.349	7e-13
P0DI18	1049	Probable disease resistan	no	no	0.443	0.093	0.444	7e-12
P0DI17	1049	Probable disease resistan	no	no	0.443	0.093	0.444	7e-12
Q8W3K3	910	Putative disease resistan	no	no	0.502	0.121	0.339	6e-10

>sp|P59584|RP8HA_ARATH Disease resistance protein RPH8A OS=Arabidopsis thaliana GN=RPH8A PE=3 SV=1

 Score = 84.3 bits (207), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 104/216 (48%), Gaps = 23/216 (10%)

Query: 1   LKNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNK 60
           L NL ++        +   L R+  +R   +S    Y    +S SL +L  LE L ++  
Sbjct: 673 LVNLEYLYGFSTQHTSVTDLLRMTKLRNLTVSLSERYNFKTLSSSLRELRNLETLYVLFS 732

Query: 61  GKMWQLSRM----------------------ILSEYKFPPSLTQLSLSNTELMEDPMPTL 98
            K + +  M                      I  +++FPP L  + L    + EDPMP L
Sbjct: 733 RKTYMVDHMGEFVLDHFIHLKELGLVVRMSKIPDQHQFPPHLVHIFLFYCGMEEDPMPIL 792

Query: 99  EKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLI 158
           EKL HL+ ++L+  +++ R++ C     F+QL  L +     LE+W +  G+MP L +L 
Sbjct: 793 EKLHHLKSVQLRYKAFVGRRMVC-SKDGFTQLCALDISKQSELEDWIVEEGSMPCLRTLT 851

Query: 159 LNPCAYLRKLPEELWCIKSLCKLELHWPQPELRQRL 194
           ++ C  L++LP+ L  I SL +L++   + E +++L
Sbjct: 852 IHDCEKLKELPDGLKYITSLKELKIEGMKREWKEKL 887

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to RPP8, it does not specifically recognize the Emco5 avirulence protein from Hyaloperonospora parasitica.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJB5|RP8L3_ARATH Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 107/221 (48%), Gaps = 24/221 (10%)

Query: 14  SCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRM---- 69
           S   D+L R+  +R F +S         +S SL +  KLE L  +   K + +  +    
Sbjct: 677 SSVTDLL-RMTKLRFFGVSFSERCTFENLSSSLRQFRKLETLSFIYSRKTYMVDYVGEFV 735

Query: 70  -----------------ILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQN 112
                            I  +++ PP +  + L    + EDPMP LEKL HL+ ++L++ 
Sbjct: 736 LDFIHLKKLSLGVHLSKIPDQHQLPPHIAHIYLLFCHMEEDPMPILEKLLHLKSVELRRK 795

Query: 113 SYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEL 172
           +++ R++ C     F QL+ L +     LEEW +  G+MP L  LI++ C  L +LP+ L
Sbjct: 796 AFIGRRMVC-SKGGFPQLRALQISEQSELEEWIVEEGSMPCLRDLIIHSCEKLEELPDGL 854

Query: 173 WCIKSLCKLELHWPQPELRQRLRAFEDMEWRPEMLDLEPFD 213
             + SL +L++   + E +++L   ED      + D++ F+
Sbjct: 855 KYVTSLKELKIEGMKREWKEKLVG-EDYYKVQHIPDVQFFN 894

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W4J9|RPP8_ARATH Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2

 Score = 77.8 bits (190), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 74/125 (59%), Gaps = 1/125 (0%)

Query: 70  ILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQ 129
           I  +++FPP L  L L    + EDPMP LEKL HL+ ++L + ++L  ++ C     F Q
Sbjct: 762 IPDQHQFPPHLVHLFLIYCGMEEDPMPILEKLLHLKSVRLARKAFLGSRMVC-SKGGFPQ 820

Query: 130 LKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQPE 189
           L ++ +     LEEW +  G+MP L +L ++ C  L++LP+ L  I SL +L++   + E
Sbjct: 821 LCVIEISKESELEEWIVEEGSMPCLRTLTIDDCKKLKELPDGLKYITSLKELKIEGMKRE 880

Query: 190 LRQRL 194
            +++L
Sbjct: 881 WKEKL 885

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. The interaction with TIP (TCV-interacting protein) may be essential for the recognition of the avirulence proteins, and the triggering of the defense response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJK8|RP8L4_ARATH Probable disease resistance RPP8-like protein 4 OS=Arabidopsis thaliana GN=RPP8L4 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 1/125 (0%)

Query: 70  ILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQ 129
           I  +++FPP L  + L +  + EDPMP LEKL HL+ + L   +++ R++ C     F Q
Sbjct: 762 IPDQHQFPPHLAHIHLVHCVMKEDPMPILEKLLHLKSVALSYGAFIGRRVVC-SKGGFPQ 820

Query: 130 LKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQPE 189
           L  L +     LEEW +  G+MP L +L ++ C  L++LP+ L  I SL +L++   + E
Sbjct: 821 LCALGISGESELEEWIVEEGSMPCLRTLTIHDCEKLKELPDGLKYITSLKELKIREMKRE 880

Query: 190 LRQRL 194
            +++L
Sbjct: 881 WKEKL 885

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIF0|DRL13_ARATH Putative disease resistance protein At1g59780 OS=Arabidopsis thaliana GN=At1g59780 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/209 (33%), Positives = 104/209 (49%), Gaps = 15/209 (7%)

Query: 1   LKNLIFISALHPSSCTPDILGRLPNVRTFRI--SGDLSYYHSGVSKSLCKLHKLECLKLV 58
           L+ LI  S    SS T   L R+  +RT +I  SG+   +   +S +L  L  LE L + 
Sbjct: 671 LETLINFST-KDSSVTD--LHRMTKLRTLQILISGE-GLHMETLSSALSMLGHLEDLTVT 726

Query: 59  NKGKMWQLSR-------MILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQ 111
                 Q          M+     FP  LT +SL    L EDPMPTLEKL  L+V+ L  
Sbjct: 727 PSENSVQFKHPKLIYRPMLPDVQHFPSHLTTISLVYCFLEEDPMPTLEKLLQLKVVSLWY 786

Query: 112 NSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEE 171
           N+Y+ R++ C G   F  L  L +  +  LEEW +  G+MP L +L +  C  L+++P+ 
Sbjct: 787 NAYVGRRMVCTG-GGFPPLHRLEIWGLDALEEWIVEEGSMPLLHTLHIVDCKKLKEIPDG 845

Query: 172 LWCIKSLCKLELHWPQPELRQRL-RAFED 199
           L  I SL +L +   +   ++++ +  ED
Sbjct: 846 LRFISSLKELAIRTNEKVFQKKVSKGGED 874

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W474|DRL7_ARATH Probable disease resistance protein At1g58390 OS=Arabidopsis thaliana GN=At1g58390 PE=2 SV=4

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 92/194 (47%), Gaps = 20/194 (10%)

Query: 1   LKNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNK 60
           L+ L++ S  H SS   D+ G +  + T  I          +S S+  L  LE L +V  
Sbjct: 681 LETLVYFSTWHSSS--KDLCG-MTRLMTLAIRLTRVTSTETLSASISGLRNLEYLYIVGT 737

Query: 61  G-----------KMWQLSRMILSEY-----KFPPSLTQLSLSNTELMEDPMPTLEKLPHL 104
                           L  ++L  Y      FP  LT + LS   L EDPMP LEKL HL
Sbjct: 738 HSKKMREEGIVLDFIHLKHLLLDLYMPRQQHFPSRLTFVKLSECGLEEDPMPILEKLLHL 797

Query: 105 EVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAY 164
           + + L + SY  R++ C G   F QLK L +  +   EEW +  G+MP LE+L +  C  
Sbjct: 798 KGVILLKGSYCGRRMVCSG-GGFPQLKKLEIVGLNKWEEWLVEEGSMPLLETLSILDCEE 856

Query: 165 LRKLPEELWCIKSL 178
           L+++P+ L  I SL
Sbjct: 857 LKEIPDGLRFIYSL 870

Possible disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0C8S1|RP8L2_ARATH Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 1/123 (0%)

Query: 72  SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLK 131
            +Y+FPP L  + L    + EDPMP LEKL HL+ + L   ++L R++ C     F QL 
Sbjct: 762 DQYRFPPHLAHIWLIGCRMEEDPMPILEKLLHLKSVYLSSGAFLGRRMVC-SKGGFPQLL 820

Query: 132 ILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQPELR 191
            L +     L EW +  G+MP L +L ++ C  L++LP+ L  +  L +L++   + E  
Sbjct: 821 ALKMSYKKELVEWRVEEGSMPCLRTLTIDNCKKLKQLPDGLKYVTCLKELKIERMKREWT 880

Query: 192 QRL 194
           +RL
Sbjct: 881 ERL 883

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI18|DRL45_ARATH Probable disease resistance protein RDL6 OS=Arabidopsis thaliana GN=RDL6 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/99 (44%), Positives = 58/99 (58%), Gaps = 1/99 (1%)

Query: 71  LSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQL 130
           L +   P  LT +SL    L EDPMPTLE+L HL+ L+L   S+  R + C G S F QL
Sbjct: 866 LPDEHLPSHLTSISLFFCCLEEDPMPTLERLVHLKELQLLFRSFSGRIMVCAG-SGFPQL 924

Query: 131 KILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLP 169
             L L  +  LEEW +  G+MP+L +L +  C  L+KLP
Sbjct: 925 HKLKLSELDGLEEWIVEDGSMPQLHTLEIRRCPKLKKLP 963

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI17|DRL11_ARATH Probable disease resistance protein RF9 OS=Arabidopsis thaliana GN=RF9 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/99 (44%), Positives = 58/99 (58%), Gaps = 1/99 (1%)

Query: 71  LSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQL 130
           L +   P  LT +SL    L EDPMPTLE+L HL+ L+L   S+  R + C G S F QL
Sbjct: 866 LPDEHLPSHLTSISLFFCCLEEDPMPTLERLVHLKELQLLFRSFSGRIMVCAG-SGFPQL 924

Query: 131 KILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLP 169
             L L  +  LEEW +  G+MP+L +L +  C  L+KLP
Sbjct: 925 HKLKLSELDGLEEWIVEDGSMPQLHTLEIRRCPKLKKLP 963

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W3K3|DRL8_ARATH Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1

 Score = 64.3 bits (155), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 63/112 (56%), Gaps = 1/112 (0%)

Query: 72  SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLK 131
            E  FP  LT +SL    L+EDP+P LEKL  L+ ++L   ++  +++       F QL 
Sbjct: 769 DEQHFPSHLTSISLDGCCLVEDPLPILEKLLELKEVRLDFRAFCGKRMVSSD-GGFPQLH 827

Query: 132 ILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLEL 183
            L++  +   EEW +  G+MP+L +L +  C  L++LP+ L  I S+  L++
Sbjct: 828 RLYIWGLAEWEEWIVEEGSMPRLHTLTIWNCQKLKQLPDGLRFIYSIKDLDM 879

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
359496848	856	PREDICTED: disease resistance RPP8-like	0.846	0.218	0.294	2e-15
255566504	857	Disease resistance protein RPP8, putativ	0.742	0.191	0.340	1e-14
359491404	922	PREDICTED: probable disease resistance R	0.864	0.207	0.298	2e-14
32453357	506	resistance protein RPP8-like protein [Ar	0.574	0.250	0.379	2e-14
224075299	896	nbs-lrr resistance protein [Populus tric	0.597	0.147	0.391	2e-14
32453355	502	resistance protein RPP8-like protein [Ar	0.873	0.384	0.297	2e-14
29839503	910	RecName: Full=Disease resistance protein	0.873	0.212	0.277	3e-14
147766035	902	hypothetical protein VITISV_038742 [Viti	0.787	0.192	0.293	4e-14
359489790	944	PREDICTED: probable disease resistance p	0.570	0.133	0.417	4e-14
255577203	1064	conserved hypothetical protein [Ricinus	0.601	0.125	0.364	4e-14

>gi|359496848|ref|XP_002269653.2| PREDICTED: disease resistance RPP8-like protein 3-like [Vitis vinifera]

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 20/207 (9%)

Query: 9   ALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLS- 67
           +++ +   PD+LG+L N+R   I G  +     +S+ L KL  L+ L+L     + + + 
Sbjct: 636 SIYGNQWIPDLLGKLTNLRKLGIHGYFASQTEALSRCLVKLSNLQNLQLRGTELILEPTI 695

Query: 68  RMILSE------------------YKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKL 109
           +++L++                   +  P+LT++ L N+ L++D    L KLP+L++LKL
Sbjct: 696 KLLLNQPNIHKLHLSGPIEKLPDPQEIQPNLTKIILENSLLVQDIFVILGKLPNLQMLKL 755

Query: 110 KQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLP 169
             NS+  +++ C   S F +L  L L  ++ LEEW +  GAMP L  LI++ C  L+K+P
Sbjct: 756 LINSFFGKEITC-SASGFPKLHGLELSELVNLEEWRVDDGAMPSLRHLIIDHCDQLKKIP 814

Query: 170 EELWCIKSLCKLELHWPQPELRQRLRA 196
           E    + +L +L L     E   R++ 
Sbjct: 815 EGFQYLTALRELFLLNMPDEFEARIKG 841

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566504|ref|XP_002524237.1| Disease resistance protein RPP8, putative [Ricinus communis] gi|223536514|gb|EEF38161.1| Disease resistance protein RPP8, putative [Ricinus communis]

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 95/176 (53%), Gaps = 12/176 (6%)

Query: 44  KSLCKLHKLECLKLVNKGKMWQLSRMILSEYKF-PPSLTQLSLSNTELMEDPMPTLEKLP 102
           K LC  H+L  +KL  +GK+ +  R +    ++ PPSL +L+L  ++L +DPMP LEKLP
Sbjct: 686 KPLCHCHQLTKVKL--EGKIAEDVRSLHHSLEYLPPSLAKLTLCRSQLRQDPMPILEKLP 743

Query: 103 HLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPC 162
           +L  L L + +Y    + C     F QL+++ L  +  LEEW +  GAMP L +L ++  
Sbjct: 744 NLRFLSL-EGTYKGPVMVC-SAYGFPQLEVVKLGWLDKLEEWMVEEGAMPCLRTLDIDSL 801

Query: 163 AYLRKLPEELWCIKSLCKLELHWPQPELRQRLRAFEDMEWRPEMLDLEPFDRSKKI 218
             LR +PE L  + +L +L + W      +R+R   + E        E FD+ + I
Sbjct: 802 RELRTIPEGLKFVGTLQELNVRWMPEAFEKRIRVINNEEG-------EDFDKVRHI 850

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491404|ref|XP_002274414.2| PREDICTED: probable disease resistance RPP8-like protein 2-like [Vitis vinifera]

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 106/218 (48%), Gaps = 27/218 (12%)

Query: 10  LHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQ---- 65
           ++ +S   + L +L N+R   + GDL  +   + K +    +LECLKL  +  M      
Sbjct: 682 INQTSYVENGLSKLTNLRELGLHGDLLLHEEAIGKWIFSSERLECLKLHTRDVMGDFAKN 741

Query: 66  ---------------------LSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHL 104
                                ++++  +EY FP +LT+LSL  + LMEDPM  LE L  L
Sbjct: 742 AIPKLNFSSHPHLIKLHLKGFMAKLFDAEY-FPQNLTELSLKGSFLMEDPMVKLEMLQSL 800

Query: 105 EVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAY 164
            VLKLK ++YL +++ C  C  F QL  L L  +  +E W +  GAM +L  L +  C  
Sbjct: 801 RVLKLKHSAYLGKEMIC-SCGGFPQLHFLKLSFLNTVERWRIEDGAMGRLRQLEIIECKR 859

Query: 165 LRKLPEELWCIKSLCKLELHWPQPELRQRLRAFEDMEW 202
           L+ +P  L  + ++ KL+L +   E   +++  +   W
Sbjct: 860 LKIVPRGLQPVTTIHKLKLGYMPREFEMKVQERQGENW 897

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|32453357|gb|AAP82810.1| resistance protein RPP8-like protein [Arabidopsis thaliana]

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 80/129 (62%), Gaps = 2/129 (1%)

Query: 55  LKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSY 114
           + L + G + ++S+ I  E++FPP L Q+ L N  + EDPMP LEKL HL+ ++LK  ++
Sbjct: 373 IHLKDLGLVVRMSK-IPDEHQFPPHLAQIYLYNCRMEEDPMPILEKLLHLKSVQLKTKAF 431

Query: 115 LERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWC 174
           + R++ C     F+QL  L +     LEEW +  G+MP L +L ++ C  L++LP+ L  
Sbjct: 432 IGRRMVC-SKGGFTQLCALDISKQSELEEWIVEEGSMPCLRTLTIHDCEKLKELPDGLKY 490

Query: 175 IKSLCKLEL 183
           I SL +L++
Sbjct: 491 ITSLKELKI 499

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075299|ref|XP_002304589.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222842021|gb|EEE79568.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 81/138 (58%), Gaps = 6/138 (4%)

Query: 45  SLCKLHKLECL-KLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPH 103
           SL +L  L  L KL  +G + QL     S+  FPP+L+QL+L +T+L ++ +  LEKLP 
Sbjct: 734 SLVQLGSLRSLIKLHLRGGISQLP----SQQDFPPNLSQLTLEHTQLEQESIEILEKLPK 789

Query: 104 LEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCA 163
           L +L+ K  SY + KL  +    F QL+ L   S+  L E+ +   A+P+LES ++  C 
Sbjct: 790 LSILRFKAESYSKEKLT-ISADGFPQLEFLEFNSLESLHEFNIEENAVPRLESFLIVNCK 848

Query: 164 YLRKLPEELWCIKSLCKL 181
            LR LPEE+  + +L KL
Sbjct: 849 GLRMLPEEMRFVATLHKL 866

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|32453355|gb|AAP82809.1| resistance protein RPP8-like protein [Arabidopsis thaliana]

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 12/205 (5%)

Query: 1   LKNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNK 60
           L NL ++        +   L R+  +R F +S         +S SL +L  LE L  + +
Sbjct: 297 LVNLEYLYGFSTQHSSVTDLLRMTKLRHFTVSLSERCNFETLSSSLRELRNLETLNYMGE 356

Query: 61  GKMWQLSRM-----------ILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKL 109
             +     +           I  +++FPP LT + L N  + EDPMP LEKL HL+ ++L
Sbjct: 357 FVLDHFIHLKELGLAGPMSKIPDQHQFPPHLTHIHLFNCRMEEDPMPILEKLLHLKSVQL 416

Query: 110 KQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLP 169
              +++ R++ C     F+QL  L +     LEEW +  G+MP L +L ++ C  L++LP
Sbjct: 417 AVEAFVGRRMVC-SKGGFTQLCALDISKESELEEWIVEEGSMPCLRTLTIHDCEKLKELP 475

Query: 170 EELWCIKSLCKLELHWPQPELRQRL 194
           + L  I SL +L++   + E +++L
Sbjct: 476 DGLKYITSLKELKIKEMKREWKEKL 500

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|29839503|sp|P59584.1|RP8HA_ARATH RecName: Full=Disease resistance protein RPH8A; AltName: Full=RPP8 homolog A

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 104/216 (48%), Gaps = 23/216 (10%)

Query: 1   LKNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNK 60
           L NL ++        +   L R+  +R   +S    Y    +S SL +L  LE L ++  
Sbjct: 673 LVNLEYLYGFSTQHTSVTDLLRMTKLRNLTVSLSERYNFKTLSSSLRELRNLETLYVLFS 732

Query: 61  GKMWQLSRM----------------------ILSEYKFPPSLTQLSLSNTELMEDPMPTL 98
            K + +  M                      I  +++FPP L  + L    + EDPMP L
Sbjct: 733 RKTYMVDHMGEFVLDHFIHLKELGLVVRMSKIPDQHQFPPHLVHIFLFYCGMEEDPMPIL 792

Query: 99  EKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLI 158
           EKL HL+ ++L+  +++ R++ C     F+QL  L +     LE+W +  G+MP L +L 
Sbjct: 793 EKLHHLKSVQLRYKAFVGRRMVC-SKDGFTQLCALDISKQSELEDWIVEEGSMPCLRTLT 851

Query: 159 LNPCAYLRKLPEELWCIKSLCKLELHWPQPELRQRL 194
           ++ C  L++LP+ L  I SL +L++   + E +++L
Sbjct: 852 IHDCEKLKELPDGLKYITSLKELKIEGMKREWKEKL 887

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766035|emb|CAN70214.1| hypothetical protein VITISV_038742 [Vitis vinifera]

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 103/194 (53%), Gaps = 20/194 (10%)

Query: 9   ALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLS- 67
           +++ +   PD+LG+L N+R   I G  +     +S+ L KL  L+ L+L     + + + 
Sbjct: 682 SIYGNQWIPDLLGKLTNLRKLGIHGYFASQTEALSRCLVKLSNLQNLQLRGTELILEPTI 741

Query: 68  RMILSE------------------YKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKL 109
           +++L++                   +  P+LT++ L  + L++D    L KLP+L++LKL
Sbjct: 742 KLLLNQPNIHKLHLSGPIEKLPDPQEIQPNLTKIILEKSLLVQDIFVILGKLPNLQMLKL 801

Query: 110 KQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLP 169
             NS+  +++ C   S F +L  L L  ++ LEEW +  GAMP L  L+++ C  L+K+P
Sbjct: 802 LINSFFGKEITC-SASGFPKLHGLELSELVNLEEWRVDDGAMPSLRHLVIDHCDQLKKIP 860

Query: 170 EELWCIKSLCKLEL 183
           E    + +L +L L
Sbjct: 861 EGFQYLTALRELFL 874

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489790|ref|XP_003633978.1| PREDICTED: probable disease resistance protein At1g58602-like [Vitis vinifera]

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/127 (41%), Positives = 75/127 (59%), Gaps = 1/127 (0%)

Query: 76  FPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHL 135
           +PP+L +L+LS+ EL +DPM  LEKLP L +L+L  NSY+ + + C     F QL+ L L
Sbjct: 806 YPPNLVKLTLSSCELKDDPMLILEKLPTLRILELVGNSYVGKNMVC-SFGGFLQLESLEL 864

Query: 136 KSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQPELRQRLR 195
            S+  LEE T+  GAM  L +L +  C  ++KLP  L  +K L KL L     EL + ++
Sbjct: 865 DSLNELEELTVEEGAMCNLRTLQILYCHKMKKLPRGLLQMKKLEKLGLRTRGEELIEEVQ 924

Query: 196 AFEDMEW 202
             E  EW
Sbjct: 925 QTEGEEW 931

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577203|ref|XP_002529484.1| conserved hypothetical protein [Ricinus communis] gi|223531042|gb|EEF32894.1| conserved hypothetical protein [Ricinus communis]

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 83/137 (60%), Gaps = 4/137 (2%)

Query: 66   LSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCS 125
            ++R +LSE   P +L +L+LS + L EDPM TL+KLP+L ++ L   S+ E+K  C    
Sbjct: 919  MNRNLLSE--LPNNLIELTLSASGLAEDPMQTLDKLPNLRIVILLLGSFTEKKYLC-SFG 975

Query: 126  SFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHW 185
             F +L++L  K ++ LEEW +  GA+P L+ L +  C  L+ LP+ L  +++L KL+L  
Sbjct: 976  GFPKLEVLKFKKLVQLEEWKVEEGALPSLKDLEIESCTNLKMLPDGLQHVRTLRKLKLT- 1034

Query: 186  PQPELRQRLRAFEDMEW 202
              P +  R++  +  +W
Sbjct: 1035 NLPMISSRIKNNQGEDW 1051

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
TAIR|locus:2169523	901	AT5G35450 [Arabidopsis thalian	0.574	0.140	0.341	2e-15
TAIR|locus:2176486	908	RPP8 "RECOGNITION OF PERONOSPO	0.561	0.136	0.352	5.5e-15
TAIR|locus:2152536	908	AT5G48620 [Arabidopsis thalian	0.561	0.136	0.352	1.2e-14
TAIR|locus:2025916	906	AT1G59780 "AT1G59780" [Arabido	0.556	0.135	0.376	5e-14
TAIR|locus:2037639	907	AT1G58390 "AT1G58390" [Arabido	0.461	0.112	0.436	8.3e-14
TAIR|locus:504956182	1049	AT1G58848 [Arabidopsis thalian	0.524	0.110	0.406	2.1e-13
TAIR|locus:2826978	1049	AT1G59218 [Arabidopsis thalian	0.524	0.110	0.406	2.1e-13
TAIR|locus:504956186	1138	AT1G58602 [Arabidopsis thalian	0.538	0.104	0.393	4.4e-12
TAIR|locus:504956184	1017	AT1G58807 "AT1G58807" [Arabido	0.511	0.111	0.362	2.1e-11
TAIR|locus:2827038	1017	AT1G59124 "AT1G59124" [Arabido	0.511	0.111	0.362	2.1e-11

TAIR|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 44/129 (34%), Positives = 77/129 (59%)

Query:    66 LSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCS 125
             LS+ I  +++ PP +  + L    + EDPMP LEKL HL+ ++L++ +++ R++ C    
Sbjct:   750 LSK-IPDQHQLPPHIAHIYLLFCHMEEDPMPILEKLLHLKSVELRRKAFIGRRMVC-SKG 807

Query:   126 SFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHW 185
              F QL+ L +     LEEW +  G+MP L  LI++ C  L +LP+ L  + SL +L++  
Sbjct:   808 GFPQLRALQISEQSELEEWIVEEGSMPCLRDLIIHSCEKLEELPDGLKYVTSLKELKIEG 867

Query:   186 PQPELRQRL 194
              + E +++L
Sbjct:   868 MKREWKEKL 876

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 5.5e-15, P = 5.5e-15
 Identities = 44/125 (35%), Positives = 74/125 (59%)

Query:    70 ILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQ 129
             I  +++FPP L  L L    + EDPMP LEKL HL+ ++L + ++L  ++ C     F Q
Sbjct:   762 IPDQHQFPPHLVHLFLIYCGMEEDPMPILEKLLHLKSVRLARKAFLGSRMVC-SKGGFPQ 820

Query:   130 LKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQPE 189
             L ++ +     LEEW +  G+MP L +L ++ C  L++LP+ L  I SL +L++   + E
Sbjct:   821 LCVIEISKESELEEWIVEEGSMPCLRTLTIDDCKKLKELPDGLKYITSLKELKIEGMKRE 880

Query:   190 LRQRL 194
              +++L
Sbjct:   881 WKEKL 885

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051707 "response to other organism" evidence=IMP

TAIR|locus:2152536 AT5G48620 [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 44/125 (35%), Positives = 73/125 (58%)

Query:    70 ILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQ 129
             I  +++FPP L  + L +  + EDPMP LEKL HL+ + L   +++ R++ C     F Q
Sbjct:   762 IPDQHQFPPHLAHIHLVHCVMKEDPMPILEKLLHLKSVALSYGAFIGRRVVC-SKGGFPQ 820

Query:   130 LKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQPE 189
             L  L +     LEEW +  G+MP L +L ++ C  L++LP+ L  I SL +L++   + E
Sbjct:   821 LCALGISGESELEEWIVEEGSMPCLRTLTIHDCEKLKELPDGLKYITSLKELKIREMKRE 880

Query:   190 LRQRL 194
              +++L
Sbjct:   881 WKEKL 885

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2025916 AT1G59780 "AT1G59780" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 5.0e-14, P = 5.0e-14
 Identities = 47/125 (37%), Positives = 72/125 (57%)

Query:    76 FPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHL 135
             FP  LT +SL    L EDPMPTLEKL  L+V+ L  N+Y+ R++ C G   F  L  L +
Sbjct:   751 FPSHLTTISLVYCFLEEDPMPTLEKLLQLKVVSLWYNAYVGRRMVCTG-GGFPPLHRLEI 809

Query:   136 KSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQPELRQRL- 194
               +  LEEW +  G+MP L +L +  C  L+++P+ L  I SL +L +   +   ++++ 
Sbjct:   810 WGLDALEEWIVEEGSMPLLHTLHIVDCKKLKEIPDGLRFISSLKELAIRTNEKVFQKKVS 869

Query:   195 RAFED 199
             +  ED
Sbjct:   870 KGGED 874

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2037639 AT1G58390 "AT1G58390" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 8.3e-14, P = 8.3e-14
 Identities = 45/103 (43%), Positives = 61/103 (59%)

Query:    76 FPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHL 135
             FP  LT + LS   L EDPMP LEKL HL+ + L + SY  R++ C G   F QLK L +
Sbjct:   769 FPSRLTFVKLSECGLEEDPMPILEKLLHLKGVILLKGSYCGRRMVCSG-GGFPQLKKLEI 827

Query:   136 KSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSL 178
               +   EEW +  G+MP LE+L +  C  L+++P+ L  I SL
Sbjct:   828 VGLNKWEEWLVEEGSMPLLETLSILDCEELKEIPDGLRFIYSL 870

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956182 AT1G58848 [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 48/118 (40%), Positives = 66/118 (55%)

Query:    71 LSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQL 130
             L +   P  LT +SL    L EDPMPTLE+L HL+ L+L   S+  R + C G S F QL
Sbjct:   866 LPDEHLPSHLTSISLFFCCLEEDPMPTLERLVHLKELQLLFRSFSGRIMVCAG-SGFPQL 924

Query:   131 KILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELH-WPQ 187
               L L  +  LEEW +  G+MP+L +L +  C  L+KLP     +++L   EL  W +
Sbjct:   925 HKLKLSELDGLEEWIVEDGSMPQLHTLEIRRCPKLKKLPNGFPQLQNLELNELEEWEE 982

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2826978 AT1G59218 [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 48/118 (40%), Positives = 66/118 (55%)

Query:    71 LSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQL 130
             L +   P  LT +SL    L EDPMPTLE+L HL+ L+L   S+  R + C G S F QL
Sbjct:   866 LPDEHLPSHLTSISLFFCCLEEDPMPTLERLVHLKELQLLFRSFSGRIMVCAG-SGFPQL 924

Query:   131 KILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELH-WPQ 187
               L L  +  LEEW +  G+MP+L +L +  C  L+KLP     +++L   EL  W +
Sbjct:   925 HKLKLSELDGLEEWIVEDGSMPQLHTLEIRRCPKLKKLPNGFPQLQNLELNELEEWEE 982

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956186 AT1G58602 [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 4.4e-12, P = 4.4e-12
 Identities = 50/127 (39%), Positives = 68/127 (53%)

Query:    73 EYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKI 132
             E  FP  LT L L +  L EDPMP LEKL  L+ L+L   S+  +K+ C  C  F QL+ 
Sbjct:   770 EQHFPSHLTTLYLQHCRLEEDPMPILEKLLQLKELELGHKSFSGKKMVCSSCG-FPQLQK 828

Query:   133 LHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEE-----LWCIKSLCKLELHWPQ 187
             L +  +   E+W +   +MP L +L +  C  L++LP+E     L  I SL K  L  P 
Sbjct:   829 LSISGLKEWEDWKVEESSMPLLLTLNIFDCRKLKQLPDEHLPSHLTAI-SLKKCGLEDPI 887

Query:   188 PELRQRL 194
             P L +RL
Sbjct:   888 PTL-ERL 893

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956184 AT1G58807 "AT1G58807" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 42/116 (36%), Positives = 63/116 (54%)

Query:    58 VNKGKMWQLSRM--ILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYL 115
             V+  ++W    M  + +E  FP  LT L L +  L EDPMP LEKL  L+ L+L   S+ 
Sbjct:   747 VHLKRLWLKLYMPRLSTEQHFPSHLTTLYLESCRLEEDPMPILEKLLQLKELELGFESFS 806

Query:   116 ERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEE 171
              +K+ C     F QL+ L L  +   E+W +   +MP L +L +  C  L++LP+E
Sbjct:   807 GKKMVC-SSGGFPQLQRLSLLKLEEWEDWKVEESSMPLLRTLDIQVCRKLKQLPDE 861

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2827038 AT1G59124 "AT1G59124" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 42/116 (36%), Positives = 63/116 (54%)

Query:    58 VNKGKMWQLSRM--ILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYL 115
             V+  ++W    M  + +E  FP  LT L L +  L EDPMP LEKL  L+ L+L   S+ 
Sbjct:   747 VHLKRLWLKLYMPRLSTEQHFPSHLTTLYLESCRLEEDPMPILEKLLQLKELELGFESFS 806

Query:   116 ERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEE 171
              +K+ C     F QL+ L L  +   E+W +   +MP L +L +  C  L++LP+E
Sbjct:   807 GKKMVC-SSGGFPQLQRLSLLKLEEWEDWKVEESSMPLLRTLDIQVCRKLKQLPDE 861

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	221
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.6
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.58
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.47
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.39
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.3
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.29
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.21
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.21
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.2
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.12
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.11
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.07
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.96
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.92
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.92
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.91
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.88
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.81
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.81
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.75
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.66
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.65
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.58
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.52
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.5
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.47
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.43
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.42
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.4
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.38
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.38
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.3
PLN03150	623	hypothetical protein; Provisional	98.29
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.26
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.25
PLN03150	623	hypothetical protein; Provisional	98.24
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.19
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.08
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.08
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.78
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.76
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.7
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.68
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.62
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.55
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.49
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.44
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.43
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.3
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.3
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.29
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.26
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.15
PRK15386	426	type III secretion protein GogB; Provisional	97.14
KOG4341	483	consensus F-box protein containing LRR [General fu	97.13
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.0
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.87
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.73
PRK15386	426	type III secretion protein GogB; Provisional	96.69
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.63
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.41
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.33
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.99
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.7
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.45
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.45
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.37
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.36
KOG4341	483	consensus F-box protein containing LRR [General fu	94.35
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.79
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.51
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.5
KOG1947	482	consensus Leucine rich repeat proteins, some prote	93.01
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.32
smart00370	26	LRR Leucine-rich repeats, outliers.	86.88
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.88
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	85.9
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	84.11

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.60  E-value=3.9e-15  Score=138.23  Aligned_cols=167  Identities=23%  Similarity=0.246  Sum_probs=91.2

Q ss_pred             ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCc--e----e----eehhh----------cc-ccC
Q 045118           16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGK--M----W----QLSRM----------IL-SEY   74 (221)
Q Consensus        16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--~----~----~L~~L----------lp-~l~   74 (221)
                      .|..++.+++|+.|+++++.  ....+|..++++++|++|+++++.-  .    +    +|+.+          +| .++
T Consensus       156 ~p~~~~~l~~L~~L~L~~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~  233 (968)
T PLN00113        156 IPNDIGSFSSLKVLDLGGNV--LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG  233 (968)
T ss_pred             CChHHhcCCCCCEEECccCc--ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh
Confidence            55566777777777777665  4456666677777777777765310  0    0    11111          23 344


Q ss_pred             cCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCc
Q 045118           75 KFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKL  154 (221)
Q Consensus        75 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L  154 (221)
                      .+ ++|++|++++|.+....+..++.+++|++|++++|.+.+. ++.. +..+++|+.|++++|.....++..+..+++|
T Consensus       234 ~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  310 (968)
T PLN00113        234 GL-TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP-IPPS-IFSLQKLISLDLSDNSLSGEIPELVIQLQNL  310 (968)
T ss_pred             cC-CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc-Cchh-HhhccCcCEEECcCCeeccCCChhHcCCCCC
Confidence            44 5555555555555443334455555555555555544322 2323 4445566666666555222334445556666


Q ss_pred             cEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118          155 ESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       155 ~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      +.|++.+|......|..+..+++|+.|++.++.
T Consensus       311 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~  343 (968)
T PLN00113        311 EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK  343 (968)
T ss_pred             cEEECCCCccCCcCChhHhcCCCCCEEECcCCC
Confidence            666666654444555566667777777776553

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.58  E-value=6.5e-15  Score=136.79  Aligned_cols=167  Identities=21%  Similarity=0.266  Sum_probs=123.6

Q ss_pred             ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCc--e----e----eehhh----------cc-ccC
Q 045118           16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGK--M----W----QLSRM----------IL-SEY   74 (221)
Q Consensus        16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--~----~----~L~~L----------lp-~l~   74 (221)
                      .|..++++++|++|++++|.  ....+|..++++++|++|+++++.-  .    +    +|+.|          +| .++
T Consensus       180 ~p~~~~~l~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~  257 (968)
T PLN00113        180 IPNSLTNLTSLEFLTLASNQ--LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG  257 (968)
T ss_pred             CChhhhhCcCCCeeeccCCC--CcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh
Confidence            55556666667777666664  4445556666666666666654210  0    0    22222          55 778


Q ss_pred             cCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCc
Q 045118           75 KFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKL  154 (221)
Q Consensus        75 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L  154 (221)
                      .+ ++|+.|++++|.+....+..++.+++|++|++++|.+.+. ++.. +..+++|+.|++.+|......+..++.+++|
T Consensus       258 ~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  334 (968)
T PLN00113        258 NL-KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE-IPEL-VIQLQNLEILHLFSNNFTGKIPVALTSLPRL  334 (968)
T ss_pred             CC-CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC-CChh-HcCCCCCcEEECCCCccCCcCChhHhcCCCC
Confidence            88 9999999999998866667888999999999998887654 5545 6678999999999988444556677889999


Q ss_pred             cEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118          155 ESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       155 ~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      +.|++++|.....+|..++.+++|+.+++..+.
T Consensus       335 ~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~  367 (968)
T PLN00113        335 QVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN  367 (968)
T ss_pred             CEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence            999999977656788889999999999998764

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.47  E-value=8e-16  Score=111.79  Aligned_cols=154  Identities=26%  Similarity=0.311  Sum_probs=132.8

Q ss_pred             cCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhh
Q 045118           20 LGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTL   98 (221)
Q Consensus        20 l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l   98 (221)
                      +-.|.++..|.++++   -...+|+.+..+.+|+.|++.++    ++++ +| .++++ ++|+.|++.-|++...+ ..+
T Consensus        29 Lf~~s~ITrLtLSHN---Kl~~vppnia~l~nlevln~~nn----qie~-lp~~issl-~klr~lnvgmnrl~~lp-rgf   98 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHN---KLTVVPPNIAELKNLEVLNLSNN----QIEE-LPTSISSL-PKLRILNVGMNRLNILP-RGF   98 (264)
T ss_pred             ccchhhhhhhhcccC---ceeecCCcHHHhhhhhhhhcccc----hhhh-cChhhhhc-hhhhheecchhhhhcCc-ccc
Confidence            445788889999999   47888999999999999999986    5566 67 89999 99999999999988554 789


Q ss_pred             ccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcC
Q 045118           99 EKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSL  178 (221)
Q Consensus        99 ~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L  178 (221)
                      +.+|.|+.|+++.|+.....+|.. +..+..|+.|.+.++. .+-+|.+.|.+.+||.|.+.. +.+-++|.+++.++.|
T Consensus        99 gs~p~levldltynnl~e~~lpgn-ff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrd-ndll~lpkeig~lt~l  175 (264)
T KOG0617|consen   99 GSFPALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRD-NDLLSLPKEIGDLTRL  175 (264)
T ss_pred             CCCchhhhhhccccccccccCCcc-hhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeecc-CchhhCcHHHHHHHHH
Confidence            999999999999999887767766 6667888888888877 788899999999999999998 5566899999999999


Q ss_pred             cEEEccCC
Q 045118          179 CKLELHWP  186 (221)
Q Consensus       179 ~~l~l~~~  186 (221)
                      ++++|.++
T Consensus       176 relhiqgn  183 (264)
T KOG0617|consen  176 RELHIQGN  183 (264)
T ss_pred             HHHhcccc
Confidence            99999885

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.39  E-value=1.4e-14  Score=123.48  Aligned_cols=160  Identities=26%  Similarity=0.313  Sum_probs=136.2

Q ss_pred             ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCc
Q 045118           16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPM   95 (221)
Q Consensus        16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~   95 (221)
                      +|..+..|.||+.++++.|   ....+|+.+-++++|+.|+++++    ++.+|--..+.. .+|+.|+++.|.++..| 
T Consensus       214 ~Ptsld~l~NL~dvDlS~N---~Lp~vPecly~l~~LrrLNLS~N----~iteL~~~~~~W-~~lEtLNlSrNQLt~LP-  284 (1255)
T KOG0444|consen  214 IPTSLDDLHNLRDVDLSEN---NLPIVPECLYKLRNLRRLNLSGN----KITELNMTEGEW-ENLETLNLSRNQLTVLP-  284 (1255)
T ss_pred             CCCchhhhhhhhhcccccc---CCCcchHHHhhhhhhheeccCcC----ceeeeeccHHHH-hhhhhhccccchhccch-
Confidence            8888999999999999999   57889999999999999999985    334421145556 78999999999998765 


Q ss_pred             hhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccC
Q 045118           96 PTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCI  175 (221)
Q Consensus        96 ~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l  175 (221)
                      .++..++.|+.|...+|...-+.+|.. ++.+..|+.+...++. ++-+|..+..+++|++|.++. +.+-++|.+|.-+
T Consensus       285 ~avcKL~kL~kLy~n~NkL~FeGiPSG-IGKL~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL  361 (1255)
T KOG0444|consen  285 DAVCKLTKLTKLYANNNKLTFEGIPSG-IGKLIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLL  361 (1255)
T ss_pred             HHHhhhHHHHHHHhccCcccccCCccc-hhhhhhhHHHHhhccc-cccCchhhhhhHHHHHhcccc-cceeechhhhhhc
Confidence            678899999999998887665568866 8899999999988877 888898999999999999986 6677899999999


Q ss_pred             CcCcEEEccCCC
Q 045118          176 KSLCKLELHWPQ  187 (221)
Q Consensus       176 ~~L~~l~l~~~~  187 (221)
                      +.|+.|++..+|
T Consensus       362 ~~l~vLDlreNp  373 (1255)
T KOG0444|consen  362 PDLKVLDLRENP  373 (1255)
T ss_pred             CCcceeeccCCc
Confidence            999999999876

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.30  E-value=2.7e-13  Score=114.74  Aligned_cols=106  Identities=25%  Similarity=0.281  Sum_probs=71.2

Q ss_pred             CCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce----eeCCCCCCC
Q 045118           78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW----TMGAGAMPK  153 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~----~~~~~~l~~  153 (221)
                      ++|+.|++++|++...+...+.-+..|++|+++.|++..- -... +..+.+|+.|+|+.+. +...    ...+..+++
T Consensus       317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l-~e~a-f~~lssL~~LdLr~N~-ls~~IEDaa~~f~gl~~  393 (873)
T KOG4194|consen  317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHL-AEGA-FVGLSSLHKLDLRSNE-LSWCIEDAAVAFNGLPS  393 (873)
T ss_pred             ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHH-HhhH-HHHhhhhhhhcCcCCe-EEEEEecchhhhccchh
Confidence            6677777777766666656666666666666666665431 0112 3356788888888776 3322    222445888


Q ss_pred             ccEEEecCCccccCcch-hhccCCcCcEEEccCCC
Q 045118          154 LESLILNPCAYLRKLPE-ELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       154 L~~L~l~~~~~l~~~~~-~~~~l~~L~~l~l~~~~  187 (221)
                      |++|.+.+ ++++++|. .+..++.|++|++.++.
T Consensus       394 LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  394 LRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA  427 (873)
T ss_pred             hhheeecC-ceeeecchhhhccCcccceecCCCCc
Confidence            99999988 77888876 57888999999988765

>PLN03210 Resistant to P

Probab=99.29  E-value=2.1e-11  Score=115.03  Aligned_cols=157  Identities=23%  Similarity=0.220  Sum_probs=85.4

Q ss_pred             hhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchh
Q 045118           18 DILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPT   97 (221)
Q Consensus        18 ~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~   97 (221)
                      +.++.+++|+.|++++|.  ....+|.+++++++|+.|++++..   +++. +|....+ ++|+.|++++|......+. 
T Consensus       651 p~ls~l~~Le~L~L~~c~--~L~~lp~si~~L~~L~~L~L~~c~---~L~~-Lp~~i~l-~sL~~L~Lsgc~~L~~~p~-  722 (1153)
T PLN03210        651 PDLSMATNLETLKLSDCS--SLVELPSSIQYLNKLEDLDMSRCE---NLEI-LPTGINL-KSLYRLNLSGCSRLKSFPD-  722 (1153)
T ss_pred             CccccCCcccEEEecCCC--CccccchhhhccCCCCEEeCCCCC---CcCc-cCCcCCC-CCCCEEeCCCCCCcccccc-
Confidence            346667777777777665  556677777777777777776521   1122 3311133 4555555555432111000 


Q ss_pred             hccCCCCcEEEecCCccCCceeeee-----------------------------CCCCCCcccEEeccccccccceeeCC
Q 045118           98 LEKLPHLEVLKLKQNSYLERKLACV-----------------------------GCSSFSQLKILHLKSMLWLEEWTMGA  148 (221)
Q Consensus        98 l~~l~~L~~L~l~~~~~~~~~l~~~-----------------------------~~~~~~~L~~L~L~~~~~l~~~~~~~  148 (221)
                        ..++|++|+++++.+..  +|..                             ....+++|+.|++++|+.+..+|..+
T Consensus       723 --~~~nL~~L~L~~n~i~~--lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si  798 (1153)
T PLN03210        723 --ISTNISWLDLDETAIEE--FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI  798 (1153)
T ss_pred             --ccCCcCeeecCCCcccc--ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhh
Confidence              12234444443333211  1100                             01123466777777776666667667


Q ss_pred             CCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118          149 GAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       149 ~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      +.+++|+.|++++|..+..+|..+ .+++|++|++.+|.
T Consensus       799 ~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~  836 (1153)
T PLN03210        799 QNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS  836 (1153)
T ss_pred             hCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence            777777777777777777776554 56667777776654

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.21  E-value=4.7e-13  Score=114.42  Aligned_cols=107  Identities=22%  Similarity=0.194  Sum_probs=53.4

Q ss_pred             ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCC
Q 045118           72 SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAM  151 (221)
Q Consensus        72 ~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l  151 (221)
                      .+..+ .+|..++++.|.+... +..+-.+++|+.|++++|.+..  +... .+...+|++|+++.+. +..+|..+..+
T Consensus       217 sld~l-~NL~dvDlS~N~Lp~v-Pecly~l~~LrrLNLS~N~ite--L~~~-~~~W~~lEtLNlSrNQ-Lt~LP~avcKL  290 (1255)
T KOG0444|consen  217 SLDDL-HNLRDVDLSENNLPIV-PECLYKLRNLRRLNLSGNKITE--LNMT-EGEWENLETLNLSRNQ-LTVLPDAVCKL  290 (1255)
T ss_pred             chhhh-hhhhhccccccCCCcc-hHHHhhhhhhheeccCcCceee--eecc-HHHHhhhhhhccccch-hccchHHHhhh
Confidence            44444 5555555555555432 2445555566666665555544  3322 3344555555555554 44455555555


Q ss_pred             CCccEEEecCCc-cccCcchhhccCCcCcEEEcc
Q 045118          152 PKLESLILNPCA-YLRKLPEELWCIKSLCKLELH  184 (221)
Q Consensus       152 ~~L~~L~l~~~~-~l~~~~~~~~~l~~L~~l~l~  184 (221)
                      ++|++|.+.++. .+..+|.+|+.+..|+.++..
T Consensus       291 ~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aa  324 (1255)
T KOG0444|consen  291 TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAA  324 (1255)
T ss_pred             HHHHHHHhccCcccccCCccchhhhhhhHHHHhh
Confidence            555555555422 223445555555554444433

>PLN03210 Resistant to P

Probab=99.21  E-value=1.3e-10  Score=109.66  Aligned_cols=153  Identities=21%  Similarity=0.231  Sum_probs=91.5

Q ss_pred             CCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhhccCCC
Q 045118           24 PNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPH  103 (221)
Q Consensus        24 ~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~  103 (221)
                      .+|++|++.++   ....++..+..+++|++|+++++.   .+.. +|.+..+ ++|+.|++.+|......+..++.+++
T Consensus       611 ~~L~~L~L~~s---~l~~L~~~~~~l~~Lk~L~Ls~~~---~l~~-ip~ls~l-~~Le~L~L~~c~~L~~lp~si~~L~~  682 (1153)
T PLN03210        611 ENLVKLQMQGS---KLEKLWDGVHSLTGLRNIDLRGSK---NLKE-IPDLSMA-TNLETLKLSDCSSLVELPSSIQYLNK  682 (1153)
T ss_pred             cCCcEEECcCc---cccccccccccCCCCCEEECCCCC---CcCc-CCccccC-CcccEEEecCCCCccccchhhhccCC
Confidence            45555555554   234455556667777777776521   1122 5566666 77777777776544333456667777


Q ss_pred             CcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccc--------------------eeeCC---------------
Q 045118          104 LEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEE--------------------WTMGA---------------  148 (221)
Q Consensus       104 L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~--------------------~~~~~---------------  148 (221)
                      |+.|++++|.... .+|.. . .+++|+.|++++|..+..                    +|...               
T Consensus       683 L~~L~L~~c~~L~-~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~  759 (1153)
T PLN03210        683 LEDLDMSRCENLE-ILPTG-I-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKS  759 (1153)
T ss_pred             CCEEeCCCCCCcC-ccCCc-C-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccch
Confidence            7777776543221 13322 2 345555555555533322                    22110               


Q ss_pred             ---------------CCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118          149 ---------------GAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       149 ---------------~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                                     ...++|+.|++++|+.+..+|..++++++|+.|++..|.
T Consensus       760 ~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~  813 (1153)
T PLN03210        760 EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI  813 (1153)
T ss_pred             hhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCC
Confidence                           012567888888888888889889999999999999875

syringae 6; Provisional

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.20  E-value=1.6e-13  Score=99.87  Aligned_cols=144  Identities=25%  Similarity=0.356  Sum_probs=121.3

Q ss_pred             ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhh--cc-ccCcCCCCccEEEeecccCCC
Q 045118           16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRM--IL-SEYKFPPSLTQLSLSNTELME   92 (221)
Q Consensus        16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L--lp-~l~~~~~~L~~L~l~~~~~~~   92 (221)
                      +|+.++.+.||+.|+++++.   .+.+|.++..+++|+.|++.-       .++  +| .++++ |-|+.|++.+|.+.+
T Consensus        48 vppnia~l~nlevln~~nnq---ie~lp~~issl~klr~lnvgm-------nrl~~lprgfgs~-p~levldltynnl~e  116 (264)
T KOG0617|consen   48 VPPNIAELKNLEVLNLSNNQ---IEELPTSISSLPKLRILNVGM-------NRLNILPRGFGSF-PALEVLDLTYNNLNE  116 (264)
T ss_pred             cCCcHHHhhhhhhhhcccch---hhhcChhhhhchhhhheecch-------hhhhcCccccCCC-chhhhhhcccccccc
Confidence            78889999999999999995   789999999999999999976       333  78 89999 999999999999886


Q ss_pred             CCch-hhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchh
Q 045118           93 DPMP-TLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEE  171 (221)
Q Consensus        93 ~~~~-~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~  171 (221)
                      ..++ -+-.+.-|+.|.+++|.+.-  +|.. .+.+.+|+.|.+..+. +-++|.+.|.+.+|+.|.+.+ +.+..+|-+
T Consensus       117 ~~lpgnff~m~tlralyl~dndfe~--lp~d-vg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqg-nrl~vlppe  191 (264)
T KOG0617|consen  117 NSLPGNFFYMTTLRALYLGDNDFEI--LPPD-VGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQG-NRLTVLPPE  191 (264)
T ss_pred             ccCCcchhHHHHHHHHHhcCCCccc--CChh-hhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhccc-ceeeecChh
Confidence            5433 45567889999998888744  6656 8899999999999888 777899999999999999998 567777766


Q ss_pred             hccC
Q 045118          172 LWCI  175 (221)
Q Consensus       172 ~~~l  175 (221)
                      ++++
T Consensus       192 l~~l  195 (264)
T KOG0617|consen  192 LANL  195 (264)
T ss_pred             hhhh
Confidence            5544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.12  E-value=7.5e-12  Score=101.93  Aligned_cols=109  Identities=25%  Similarity=0.239  Sum_probs=74.8

Q ss_pred             ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCC
Q 045118           72 SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGA  150 (221)
Q Consensus        72 ~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~  150 (221)
                      .++++ ++|..|++++|-+...| ..++.+..|+.|+++.|+|..  +|.+ ...++.++.+-.+++. +..++.. .+.
T Consensus       430 ~l~~l-~kLt~L~L~NN~Ln~LP-~e~~~lv~Lq~LnlS~NrFr~--lP~~-~y~lq~lEtllas~nq-i~~vd~~~l~n  503 (565)
T KOG0472|consen  430 ELSQL-QKLTFLDLSNNLLNDLP-EEMGSLVRLQTLNLSFNRFRM--LPEC-LYELQTLETLLASNNQ-IGSVDPSGLKN  503 (565)
T ss_pred             HHHhh-hcceeeecccchhhhcc-hhhhhhhhhheeccccccccc--chHH-HhhHHHHHHHHhcccc-ccccChHHhhh
Confidence            34556 66666667666666554 344455557777776666544  4444 4445555555445454 5556444 667


Q ss_pred             CCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118          151 MPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       151 l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      |..|.+|++.+ +.+.++|.++++|++|++|.+.++|
T Consensus       504 m~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  504 MRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             hhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence            89999999987 7788999999999999999999987

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.11  E-value=1.3e-10  Score=98.86  Aligned_cols=150  Identities=21%  Similarity=0.199  Sum_probs=77.1

Q ss_pred             CccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhhccCCCC
Q 045118           25 NVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHL  104 (221)
Q Consensus        25 ~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L  104 (221)
                      .-+.|++++|.  ....-+..|.++++|+.+++..|    -|.. +|.++....+|++|++.+|.+.....+.++.++.|
T Consensus        79 ~t~~LdlsnNk--l~~id~~~f~nl~nLq~v~l~~N----~Lt~-IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~al  151 (873)
T KOG4194|consen   79 QTQTLDLSNNK--LSHIDFEFFYNLPNLQEVNLNKN----ELTR-IPRFGHESGHLEKLDLRHNLISSVTSEELSALPAL  151 (873)
T ss_pred             ceeeeeccccc--cccCcHHHHhcCCcceeeeeccc----hhhh-cccccccccceeEEeeeccccccccHHHHHhHhhh
Confidence            34456666665  44555666677777777777653    1222 55443332456666666666655544555566666


Q ss_pred             cEEEecCCccCCceeeeeCCCCCCcccEEecccccccccee-eCCCCCCCccEEEecCCccccCcch-hhccCCcCcEEE
Q 045118          105 EVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWT-MGAGAMPKLESLILNPCAYLRKLPE-ELWCIKSLCKLE  182 (221)
Q Consensus       105 ~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~l~  182 (221)
                      +.|+++.|.+...+.+.  +..-.++++|+|.++. ++++. ..+..+.+|-.|.+++ +.++.+|. .+.++++|+.|+
T Consensus       152 rslDLSrN~is~i~~~s--fp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~Ld  227 (873)
T KOG4194|consen  152 RSLDLSRNLISEIPKPS--FPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLD  227 (873)
T ss_pred             hhhhhhhchhhcccCCC--CCCCCCceEEeecccc-ccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhh
Confidence            66666665554421111  1122345566665555 44442 2233344555555555 34445543 234455555555


Q ss_pred             ccC
Q 045118          183 LHW  185 (221)
Q Consensus       183 l~~  185 (221)
                      +..
T Consensus       228 Lnr  230 (873)
T KOG4194|consen  228 LNR  230 (873)
T ss_pred             ccc
Confidence            544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.07  E-value=9.6e-12  Score=110.09  Aligned_cols=110  Identities=28%  Similarity=0.307  Sum_probs=80.8

Q ss_pred             ccccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCC
Q 045118           70 ILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAG  149 (221)
Q Consensus        70 lp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~  149 (221)
                      +|.+..+ .+|+.|++++|++...+...+.++..|++|++++|....  ++.. ...+++|++|...++. +..+| .+.
T Consensus       376 ~p~l~~~-~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~--Lp~t-va~~~~L~tL~ahsN~-l~~fP-e~~  449 (1081)
T KOG0618|consen  376 FPVLVNF-KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT--LPDT-VANLGRLHTLRAHSNQ-LLSFP-ELA  449 (1081)
T ss_pred             hhhhccc-cceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh--hhHH-HHhhhhhHHHhhcCCc-eeech-hhh
Confidence            5566777 788888888888887776777888888888888887655  4545 5677788888777766 66677 666


Q ss_pred             CCCCccEEEecCCccccCc--chhhccCCcCcEEEccCCC
Q 045118          150 AMPKLESLILNPCAYLRKL--PEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       150 ~l~~L~~L~l~~~~~l~~~--~~~~~~l~~L~~l~l~~~~  187 (221)
                      ++++|+.++++. +.+..+  |..... |+|++|+++++.
T Consensus       450 ~l~qL~~lDlS~-N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  450 QLPQLKVLDLSC-NNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             hcCcceEEeccc-chhhhhhhhhhCCC-cccceeeccCCc
Confidence            788999999986 555443  332222 789999999877

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.96  E-value=9.5e-12  Score=101.34  Aligned_cols=59  Identities=25%  Similarity=0.216  Sum_probs=53.6

Q ss_pred             CCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118          126 SFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       126 ~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      .++++..|++.++. ++++|.+...+.+|.+|++++ +.++.+|..++++ .|+.+.+.|+|
T Consensus       250 ~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  250 HLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             ccccceeeeccccc-cccCchHHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCc
Confidence            57899999999988 999999988899999999997 7788999999999 99999999998

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.92  E-value=3.3e-10  Score=84.32  Aligned_cols=105  Identities=23%  Similarity=0.206  Sum_probs=34.9

Q ss_pred             CCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceee--CCCCCCCcc
Q 045118           78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTM--GAGAMPKLE  155 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~--~~~~l~~L~  155 (221)
                      .+|+.|++++|.+...  +.+..+++|++|++++|++..  +...-...+|+|+.|.+.++. +.++..  .+..+|+|+
T Consensus        42 ~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~--i~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~  116 (175)
T PF14580_consen   42 DKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS--ISEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLR  116 (175)
T ss_dssp             TT--EEE-TTS--S----TT----TT--EEE--SS---S---CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--
T ss_pred             cCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc--cccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcc
Confidence            4555556665555533  244455556666665555543  211101135556666655554 333311  123456666


Q ss_pred             EEEecCCccccCc---chhhccCCcCcEEEccCCC
Q 045118          156 SLILNPCAYLRKL---PEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       156 ~L~l~~~~~l~~~---~~~~~~l~~L~~l~l~~~~  187 (221)
                      .|++.+|+....-   ...+..+|+|+.|+-....
T Consensus       117 ~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~  151 (175)
T PF14580_consen  117 VLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT  151 (175)
T ss_dssp             EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred             eeeccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence            6666665432211   2246778888888765543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=2.1e-10  Score=94.34  Aligned_cols=173  Identities=25%  Similarity=0.275  Sum_probs=108.8

Q ss_pred             CcceeceecCCCC---Ch---hhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhh-cc----
Q 045118            3 NLIFISALHPSSC---TP---DILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRM-IL----   71 (221)
Q Consensus         3 ~L~~L~~~~~~~~---~~---~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L-lp----   71 (221)
                      +++.|..+..+..   .+   +....|+++|.|+++.|-...+..+......+++|+.|+++.|       +| .|    
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-------rl~~~~~s~  191 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-------RLSNFISSN  191 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-------cccCCcccc
Confidence            3445555544433   22   3566799999999999974445666778888999999999984       21 12    


Q ss_pred             ccCcCCCCccEEEeecccCCCCC-chhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEecccccccccee--eCC
Q 045118           72 SEYKFPPSLTQLSLSNTELMEDP-MPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWT--MGA  148 (221)
Q Consensus        72 ~l~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~  148 (221)
                      .-..+ ++|+.|.++.|+++... ...+..+|+|+.|.+..|..... .... ...++.|+.|+|++++ +.+++  ...
T Consensus       192 ~~~~l-~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~-~~~~-~~i~~~L~~LdLs~N~-li~~~~~~~~  267 (505)
T KOG3207|consen  192 TTLLL-SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI-KATS-TKILQTLQELDLSNNN-LIDFDQGYKV  267 (505)
T ss_pred             chhhh-hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce-ecch-hhhhhHHhhccccCCc-cccccccccc
Confidence            11245 78899999999887433 23455688888888877742110 1112 3356778888887777 44443  334


Q ss_pred             CCCCCccEEEecCCccccCc--chh-----hccCCcCcEEEccCCC
Q 045118          149 GAMPKLESLILNPCAYLRKL--PEE-----LWCIKSLCKLELHWPQ  187 (221)
Q Consensus       149 ~~l~~L~~L~l~~~~~l~~~--~~~-----~~~l~~L~~l~l~~~~  187 (221)
                      +.||.|..|.++.|. +.++  |..     ...+++|+.|.+..++
T Consensus       268 ~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~  312 (505)
T KOG3207|consen  268 GTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENN  312 (505)
T ss_pred             ccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCc
Confidence            557777777776632 2222  221     2446777777776665

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.91  E-value=9.5e-10  Score=89.71  Aligned_cols=40  Identities=23%  Similarity=0.156  Sum_probs=20.4

Q ss_pred             hhcCCCCCccEEEEEecCCccccchhHhhccCC---CCcEEEeee
Q 045118           18 DILGRLPNVRTFRISGDLSYYHSGVSKSLCKLH---KLECLKLVN   59 (221)
Q Consensus        18 ~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~---~L~~L~l~~   59 (221)
                      ..++++++|++|+++++.  .....+..+..+.   +|++|++++
T Consensus        75 ~~l~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~~~~L~~L~ls~  117 (319)
T cd00116          75 QGLTKGCGLQELDLSDNA--LGPDGCGVLESLLRSSSLQELKLNN  117 (319)
T ss_pred             HHHHhcCceeEEEccCCC--CChhHHHHHHHHhccCcccEEEeeC
Confidence            345556666666666654  2223333333333   366666655

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.88  E-value=1.1e-09  Score=89.37  Aligned_cols=61  Identities=28%  Similarity=0.354  Sum_probs=25.5

Q ss_pred             CCccEEEeecccCCCCCch----hhccCCCCcEEEecCCccCCce---eeeeCCCCCCcccEEeccccc
Q 045118           78 PSLTQLSLSNTELMEDPMP----TLEKLPHLEVLKLKQNSYLERK---LACVGCSSFSQLKILHLKSML  139 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~---l~~~~~~~~~~L~~L~L~~~~  139 (221)
                      ++|++|++++|.+......    .+..+++|++|++++|.+.+..   +... ...+++|++|++++|.
T Consensus       165 ~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~-~~~~~~L~~L~ls~n~  232 (319)
T cd00116         165 RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET-LASLKSLEVLNLGDNN  232 (319)
T ss_pred             CCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH-hcccCCCCEEecCCCc
Confidence            4455555555544422111    1223345555555544433211   1111 2234555555555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.81  E-value=2.5e-09  Score=79.62  Aligned_cols=129  Identities=26%  Similarity=0.324  Sum_probs=45.8

Q ss_pred             cCCCCCccEEEEEecCCccccchhHhhc-cCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhh
Q 045118           20 LGRLPNVRTFRISGDLSYYHSGVSKSLC-KLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTL   98 (221)
Q Consensus        20 l~~l~~Lr~L~l~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l   98 (221)
                      +.+...+|+|++.++.   ...+ +.++ .+.+|+.|+++.+    .+++ ++.+..+ ++|+.|++++|+++... +.+
T Consensus        15 ~~n~~~~~~L~L~~n~---I~~I-e~L~~~l~~L~~L~Ls~N----~I~~-l~~l~~L-~~L~~L~L~~N~I~~i~-~~l   83 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQ---ISTI-ENLGATLDKLEVLDLSNN----QITK-LEGLPGL-PRLKTLDLSNNRISSIS-EGL   83 (175)
T ss_dssp             -------------------------S--TT-TT--EEE-TTS------S---TT-----TT--EEE--SS---S-C-HHH
T ss_pred             cccccccccccccccc---cccc-cchhhhhcCCCEEECCCC----CCcc-ccCccCh-hhhhhcccCCCCCCccc-cch
Confidence            3345568888888885   2332 3444 5788899999875    3344 5566667 88999999999888654 233


Q ss_pred             -ccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEecccccccccee----eCCCCCCCccEEEecC
Q 045118           99 -EKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWT----MGAGAMPKLESLILNP  161 (221)
Q Consensus        99 -~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~----~~~~~l~~L~~L~l~~  161 (221)
                       ..+++|+.|++++|.+..-.-... ...+++|+.|++.+++ +.+-+    .-+..+|+|+.|+-..
T Consensus        84 ~~~lp~L~~L~L~~N~I~~l~~l~~-L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   84 DKNLPNLQELYLSNNKISDLNELEP-LSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             HHH-TT--EEE-TTS---SCCCCGG-GGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             HHhCCcCCEEECcCCcCCChHHhHH-HHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEE
Confidence             468899999998888764222223 5578899999998888 33221    1123467777776543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.81  E-value=4.9e-10  Score=99.55  Aligned_cols=189  Identities=21%  Similarity=0.246  Sum_probs=130.5

Q ss_pred             ChhhcCCCCCccEEEEEecCC--------------------ccccchhHhhccCCCCcEEEeeecCc------ee-----
Q 045118           16 TPDILGRLPNVRTFRISGDLS--------------------YYHSGVSKSLCKLHKLECLKLVNKGK------MW-----   64 (221)
Q Consensus        16 ~~~~l~~l~~Lr~L~l~~~~~--------------------~~~~~~~~~l~~l~~L~~L~l~~~~~------~~-----   64 (221)
                      .|+.++.+.+|..+.+.+|..                    .....+|+.+.+++.|++|+++.+.-      ++     
T Consensus       256 lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~  335 (1081)
T KOG0618|consen  256 LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNA  335 (1081)
T ss_pred             chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhH
Confidence            556667777777776666540                    02344566777788888888877410      00     


Q ss_pred             eehhh---------ccccC--cCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEE
Q 045118           65 QLSRM---------ILSEY--KFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKIL  133 (221)
Q Consensus        65 ~L~~L---------lp~l~--~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L  133 (221)
                      .++.+         +|..+  .+ +.|+.|.+.+|.+++...+.+..+++|+.|++++|+...  +|.....+++.|++|
T Consensus       336 ~l~~ln~s~n~l~~lp~~~e~~~-~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~--fpas~~~kle~LeeL  412 (1081)
T KOG0618|consen  336 SLNTLNVSSNKLSTLPSYEENNH-AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS--FPASKLRKLEELEEL  412 (1081)
T ss_pred             HHHHHhhhhccccccccccchhh-HHHHHHHHhcCcccccchhhhccccceeeeeeccccccc--CCHHHHhchHHhHHH
Confidence            11111         33222  24 678889999999988777888899999999999998654  443325678899999


Q ss_pred             eccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCCHHHHHHhhhccccc-cccCCCCcccc
Q 045118          134 HLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQPELRQRLRAFEDME-WRPEMLDLEPF  212 (221)
Q Consensus       134 ~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~  212 (221)
                      +|+++. ++.++.....+++|++|.... +.+..+| .+..++.|+.+++..+.   ....--...+. .++++.|+++-
T Consensus       413 ~LSGNk-L~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS~N~---L~~~~l~~~~p~p~LkyLdlSGN  486 (1081)
T KOG0618|consen  413 NLSGNK-LTTLPDTVANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLSCNN---LSEVTLPEALPSPNLKYLDLSGN  486 (1081)
T ss_pred             hcccch-hhhhhHHHHhhhhhHHHhhcC-Cceeech-hhhhcCcceEEecccch---hhhhhhhhhCCCcccceeeccCC
Confidence            999998 899988888899999998877 6777889 78899999999998764   12111112222 45666666654


Q ss_pred             c
Q 045118          213 D  213 (221)
Q Consensus       213 ~  213 (221)
                      .
T Consensus       487 ~  487 (1081)
T KOG0618|consen  487 T  487 (1081)
T ss_pred             c
Confidence            4

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.75  E-value=5.1e-08  Score=87.75  Aligned_cols=99  Identities=27%  Similarity=0.235  Sum_probs=64.3

Q ss_pred             CCccEEEeecccCCCCCch--hh-------------c-cCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccc
Q 045118           78 PSLTQLSLSNTELMEDPMP--TL-------------E-KLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWL  141 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~--~l-------------~-~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l  141 (221)
                      .+|+.|++++|.+...+..  .+             . ..++|+.|++++|.+..  ++.    ..++|+.|++++|. +
T Consensus       342 ~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~--LP~----l~s~L~~LdLS~N~-L  414 (788)
T PRK15387        342 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS--LPV----LPSELKELMVSGNR-L  414 (788)
T ss_pred             cccceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCcccC--CCC----cccCCCEEEccCCc-C
Confidence            4678888888777654310  00             0 01245566665555443  221    13467777777776 6


Q ss_pred             cceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118          142 EEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       142 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      ..+|..   ..+|+.|++++ +.++.+|..+..+++|+.+++.+++
T Consensus       415 ssIP~l---~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        415 TSLPML---PSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             CCCCcc---hhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence            666532   34677888887 5678899889999999999999986

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.66  E-value=4.2e-10  Score=95.36  Aligned_cols=155  Identities=22%  Similarity=0.323  Sum_probs=119.8

Q ss_pred             ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCC
Q 045118           16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDP   94 (221)
Q Consensus        16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~   94 (221)
                      +|.++..+..|..+.+..|   ....+|..++++..|..|+++.+    ++.. +| .++.+|  |+.|.+++|++...+
T Consensus        90 lp~~~~~f~~Le~liLy~n---~~r~ip~~i~~L~~lt~l~ls~N----qlS~-lp~~lC~lp--Lkvli~sNNkl~~lp  159 (722)
T KOG0532|consen   90 LPEEACAFVSLESLILYHN---CIRTIPEAICNLEALTFLDLSSN----QLSH-LPDGLCDLP--LKVLIVSNNKLTSLP  159 (722)
T ss_pred             CchHHHHHHHHHHHHHHhc---cceecchhhhhhhHHHHhhhccc----hhhc-CChhhhcCc--ceeEEEecCccccCC
Confidence            4455555555666666665   46778889999999999999885    3344 66 777773  899999999988665


Q ss_pred             chhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhcc
Q 045118           95 MPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWC  174 (221)
Q Consensus        95 ~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~  174 (221)
                       ..++..+.|..|+.+.|.+..  ++.. .+.+.+|+.|++..+. +.++|.+...+| |.+|++++ +++..+|..+.+
T Consensus       160 -~~ig~~~tl~~ld~s~nei~s--lpsq-l~~l~slr~l~vrRn~-l~~lp~El~~Lp-Li~lDfSc-Nkis~iPv~fr~  232 (722)
T KOG0532|consen  160 -EEIGLLPTLAHLDVSKNEIQS--LPSQ-LGYLTSLRDLNVRRNH-LEDLPEELCSLP-LIRLDFSC-NKISYLPVDFRK  232 (722)
T ss_pred             -cccccchhHHHhhhhhhhhhh--chHH-hhhHHHHHHHHHhhhh-hhhCCHHHhCCc-eeeeeccc-Cceeecchhhhh
Confidence             567788889999998888765  6666 7788888988888777 777887777555 78889884 888899999999


Q ss_pred             CCcCcEEEccCCC
Q 045118          175 IKSLCKLELHWPQ  187 (221)
Q Consensus       175 l~~L~~l~l~~~~  187 (221)
                      ++.|++|-+..+|
T Consensus       233 m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  233 MRHLQVLQLENNP  245 (722)
T ss_pred             hhhheeeeeccCC
Confidence            9999999888776

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.65  E-value=7.5e-08  Score=86.80  Aligned_cols=54  Identities=22%  Similarity=0.268  Sum_probs=31.2

Q ss_pred             CcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118          128 SQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       128 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      ++|+.|++.+|. ++.++..+  .++|+.|++++| .++.+|..+  .++|++|++.+|.
T Consensus       325 ~sL~~L~Ls~N~-Lt~LP~~l--~~sL~~L~Ls~N-~L~~LP~~l--p~~L~~LdLs~N~  378 (754)
T PRK15370        325 PGLKTLEAGENA-LTSLPASL--PPELQVLDVSKN-QITVLPETL--PPTITTLDVSRNA  378 (754)
T ss_pred             ccceeccccCCc-cccCChhh--cCcccEEECCCC-CCCcCChhh--cCCcCEEECCCCc
Confidence            466666666665 55554332  256777777764 455566544  2566777776653

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.58  E-value=4.4e-08  Score=82.53  Aligned_cols=167  Identities=26%  Similarity=0.367  Sum_probs=111.5

Q ss_pred             cceeceecCCCC-ChhhcCCCC-CccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccC-cCCCCc
Q 045118            4 LIFISALHPSSC-TPDILGRLP-NVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEY-KFPPSL   80 (221)
Q Consensus         4 L~~L~~~~~~~~-~~~~l~~l~-~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~-~~~~~L   80 (221)
                      ++.|........ ++...+.+. +|+.|+++.+   ....++..++.+++|+.|+++.+    ++.. +|... .. ++|
T Consensus       118 l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N---~i~~l~~~~~~l~~L~~L~l~~N----~l~~-l~~~~~~~-~~L  188 (394)
T COG4886         118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN---KIESLPSPLRNLPNLKNLDLSFN----DLSD-LPKLLSNL-SNL  188 (394)
T ss_pred             eeEEecCCcccccCccccccchhhccccccccc---chhhhhhhhhccccccccccCCc----hhhh-hhhhhhhh-hhh
Confidence            444443333333 555566664 8888888888   45666677888888888888874    2333 55333 56 788


Q ss_pred             cEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEec
Q 045118           81 TQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILN  160 (221)
Q Consensus        81 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~  160 (221)
                      +.|++++|.+...+ .......+|+++.++.|....  .+.. ...+.++..+.+.++. +...+...+.++.++.|+++
T Consensus       189 ~~L~ls~N~i~~l~-~~~~~~~~L~~l~~~~N~~~~--~~~~-~~~~~~l~~l~l~~n~-~~~~~~~~~~l~~l~~L~~s  263 (394)
T COG4886         189 NNLDLSGNKISDLP-PEIELLSALEELDLSNNSIIE--LLSS-LSNLKNLSGLELSNNK-LEDLPESIGNLSNLETLDLS  263 (394)
T ss_pred             hheeccCCccccCc-hhhhhhhhhhhhhhcCCccee--cchh-hhhcccccccccCCce-eeeccchhccccccceeccc
Confidence            88888888887655 233455668888887775332  2333 5566777777766665 55545566778888999988


Q ss_pred             CCccccCcchhhccCCcCcEEEccCC
Q 045118          161 PCAYLRKLPEELWCIKSLCKLELHWP  186 (221)
Q Consensus       161 ~~~~l~~~~~~~~~l~~L~~l~l~~~  186 (221)
                      + +.+..++. ++.+.+++++++.+.
T Consensus       264 ~-n~i~~i~~-~~~~~~l~~L~~s~n  287 (394)
T COG4886         264 N-NQISSISS-LGSLTNLRELDLSGN  287 (394)
T ss_pred             c-cccccccc-ccccCccCEEeccCc
Confidence            7 55666665 778888888888774

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.52  E-value=2.7e-07  Score=83.25  Aligned_cols=140  Identities=22%  Similarity=0.233  Sum_probs=70.3

Q ss_pred             CCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccC------------------cCCCCccEEE
Q 045118           24 PNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEY------------------KFPPSLTQLS   84 (221)
Q Consensus        24 ~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~------------------~~~~~L~~L~   84 (221)
                      ++|+.|++++|.   ...+|..+.  ++|++|+++++    ++.. +| .+.                  .++.+|+.|+
T Consensus       199 ~~L~~L~Ls~N~---LtsLP~~l~--~nL~~L~Ls~N----~Lts-LP~~l~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~  268 (754)
T PRK15370        199 EQITTLILDNNE---LKSLPENLQ--GNIKTLYANSN----QLTS-IPATLPDTIQEMELSINRITELPERLPSALQSLD  268 (754)
T ss_pred             cCCcEEEecCCC---CCcCChhhc--cCCCEEECCCC----cccc-CChhhhccccEEECcCCccCcCChhHhCCCCEEE
Confidence            356777777763   344555443  46777777653    1122 22 110                  0113445555


Q ss_pred             eecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCcc
Q 045118           85 LSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAY  164 (221)
Q Consensus        85 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~  164 (221)
                      +++|.+...+ ..+  .++|+.|++++|.+..  ++.. .  .++|+.|++++|. +..+|..  ..++|+.|.+++| .
T Consensus       269 Ls~N~L~~LP-~~l--~~sL~~L~Ls~N~Lt~--LP~~-l--p~sL~~L~Ls~N~-Lt~LP~~--l~~sL~~L~Ls~N-~  336 (754)
T PRK15370        269 LFHNKISCLP-ENL--PEELRYLSVYDNSIRT--LPAH-L--PSGITHLNVQSNS-LTALPET--LPPGLKTLEAGEN-A  336 (754)
T ss_pred             CcCCccCccc-ccc--CCCCcEEECCCCcccc--Cccc-c--hhhHHHHHhcCCc-cccCCcc--ccccceeccccCC-c
Confidence            5544444322 111  1345555555544332  2211 1  2345555555544 4444322  2357888888874 4


Q ss_pred             ccCcchhhccCCcCcEEEccCCC
Q 045118          165 LRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       165 l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      ++.+|..+  .++|+.|++..+.
T Consensus       337 Lt~LP~~l--~~sL~~L~Ls~N~  357 (754)
T PRK15370        337 LTSLPASL--PPELQVLDVSKNQ  357 (754)
T ss_pred             cccCChhh--cCcccEEECCCCC
Confidence            66677654  3688888888764

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.50  E-value=2e-08  Score=82.06  Aligned_cols=102  Identities=22%  Similarity=0.158  Sum_probs=60.6

Q ss_pred             hhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEecccccccccee-eCCCCCCCccEEEecCCccccCc-chhhcc
Q 045118           97 TLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWT-MGAGAMPKLESLILNPCAYLRKL-PEELWC  174 (221)
Q Consensus        97 ~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~  174 (221)
                      .+..+++|+.|++++|.+... -... +++...+++|.|..+. ++.+. ..+..+..|+.|++.++ .++.+ |..+..
T Consensus       269 cf~~L~~L~~lnlsnN~i~~i-~~~a-Fe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~~  344 (498)
T KOG4237|consen  269 CFKKLPNLRKLNLSNNKITRI-EDGA-FEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGAFQT  344 (498)
T ss_pred             HHhhcccceEeccCCCccchh-hhhh-hcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCC-eeEEEecccccc
Confidence            355666777777766665432 1112 4455666666666655 44442 23445677888888884 44444 666778


Q ss_pred             CCcCcEEEccCCCHHHHHHhhhcccccc
Q 045118          175 IKSLCKLELHWPQPELRQRLRAFEDMEW  202 (221)
Q Consensus       175 l~~L~~l~l~~~~~~~~~~l~~~~~~~~  202 (221)
                      +.+|.++.+.++|-..--++.|..+|..
T Consensus       345 ~~~l~~l~l~~Np~~CnC~l~wl~~Wlr  372 (498)
T KOG4237|consen  345 LFSLSTLNLLSNPFNCNCRLAWLGEWLR  372 (498)
T ss_pred             cceeeeeehccCcccCccchHHHHHHHh
Confidence            8888888888876333444555544444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=4.5e-09  Score=82.99  Aligned_cols=166  Identities=17%  Similarity=0.147  Sum_probs=115.8

Q ss_pred             hhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhh-cc-ccCcCCCCccEEEeecccCCCCC
Q 045118           17 PDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRM-IL-SEYKFPPSLTQLSLSNTELMEDP   94 (221)
Q Consensus        17 ~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L-lp-~l~~~~~~L~~L~l~~~~~~~~~   94 (221)
                      -..+.+|+.|+.|.++++.  ..+.+...+.+-.+|+.|+++.....   ... +. .+.++ +.|+.|++++|.+....
T Consensus       203 ~~iLs~C~kLk~lSlEg~~--LdD~I~~~iAkN~~L~~lnlsm~sG~---t~n~~~ll~~sc-s~L~~LNlsWc~l~~~~  276 (419)
T KOG2120|consen  203 HGILSQCSKLKNLSLEGLR--LDDPIVNTIAKNSNLVRLNLSMCSGF---TENALQLLLSSC-SRLDELNLSWCFLFTEK  276 (419)
T ss_pred             HHHHHHHHhhhhccccccc--cCcHHHHHHhccccceeecccccccc---chhHHHHHHHhh-hhHhhcCchHhhccchh
Confidence            3446778999999999987  66777788899999999999873111   110 12 34555 89999999999887544


Q ss_pred             chh-hcc-CCCCcEEEecCCccC--CceeeeeCCCCCCcccEEeccccccccc-eeeCCCCCCCccEEEecCCccccCc-
Q 045118           95 MPT-LEK-LPHLEVLKLKQNSYL--ERKLACVGCSSFSQLKILHLKSMLWLEE-WTMGAGAMPKLESLILNPCAYLRKL-  168 (221)
Q Consensus        95 ~~~-l~~-l~~L~~L~l~~~~~~--~~~l~~~~~~~~~~L~~L~L~~~~~l~~-~~~~~~~l~~L~~L~l~~~~~l~~~-  168 (221)
                      ... +.+ -++|+.|++++++-.  ...+... ....|+|.+|+|++|..++. +...+-+|+.|++|.++.|..+..- 
T Consensus       277 Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL-~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~  355 (419)
T KOG2120|consen  277 VTVAVAHISETLTQLNLSGYRRNLQKSHLSTL-VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPET  355 (419)
T ss_pred             hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH-HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHH
Confidence            332 222 468899999887632  1112223 34588999999998876653 2334556899999999998765311 


Q ss_pred             chhhccCCcCcEEEccCCCHH
Q 045118          169 PEELWCIKSLCKLELHWPQPE  189 (221)
Q Consensus       169 ~~~~~~l~~L~~l~l~~~~~~  189 (221)
                      -..+...|+|.+|++.+|.++
T Consensus       356 ~~~l~s~psl~yLdv~g~vsd  376 (419)
T KOG2120|consen  356 LLELNSKPSLVYLDVFGCVSD  376 (419)
T ss_pred             eeeeccCcceEEEEeccccCc
Confidence            124788999999999997644

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=3.3e-08  Score=78.18  Aligned_cols=152  Identities=18%  Similarity=0.157  Sum_probs=106.9

Q ss_pred             ecCCCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecc
Q 045118           10 LHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNT   88 (221)
Q Consensus        10 ~~~~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~   88 (221)
                      ...++.+...+++=.+|+.|+++.+.+.....+.-.+.+++.|..|++++.+.+   +..+. .+....++|+.|+++|+
T Consensus       220 ~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~---~~~Vtv~V~hise~l~~LNlsG~  296 (419)
T KOG2120|consen  220 LRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF---TEKVTVAVAHISETLTQLNLSGY  296 (419)
T ss_pred             cccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhcc---chhhhHHHhhhchhhhhhhhhhh
Confidence            344555667788889999999999864333444556788999999999983221   11022 33333478999999998


Q ss_pred             cCC--CCCchhh-ccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeCCCCCCCccEEEecCCcc
Q 045118           89 ELM--EDPMPTL-EKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMGAGAMPKLESLILNPCAY  164 (221)
Q Consensus        89 ~~~--~~~~~~l-~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~  164 (221)
                      +-.  ..+...+ ..+|+|..|++++|..-....-.. +..|+.|+++.++.|..+..- ...++..|.|.+|++.+|..
T Consensus       297 rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  297 RRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             HhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH-HHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence            633  2234444 479999999999887544334445 668999999999999855422 34567899999999999764


Q ss_pred             c
Q 045118          165 L  165 (221)
Q Consensus       165 l  165 (221)
                      -
T Consensus       376 d  376 (419)
T KOG2120|consen  376 D  376 (419)
T ss_pred             c
Confidence            3

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.42  E-value=1.8e-07  Score=57.36  Aligned_cols=59  Identities=34%  Similarity=0.509  Sum_probs=37.4

Q ss_pred             CCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeee-eCCCCCCcccEEeccccc
Q 045118           78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLAC-VGCSSFSQLKILHLKSML  139 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~-~~~~~~~~L~~L~L~~~~  139 (221)
                      |+|++|++++|.+...+...++.+++|++|++++|.+..  ++. . +.++++|++|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~--i~~~~-f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS--IPPDA-FSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE--EETTT-TTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc--cCHHH-HcCCCCCCEEeCcCCc
Confidence            456777777777666655566677777777776666543  222 3 4566777777776654

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.40  E-value=3.7e-07  Score=55.97  Aligned_cols=41  Identities=37%  Similarity=0.533  Sum_probs=21.6

Q ss_pred             ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCc
Q 045118           72 SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNS  113 (221)
Q Consensus        72 ~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  113 (221)
                      ++..+ ++|++|++++|.+...++.++..+++|++|++++|.
T Consensus        20 ~f~~l-~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen   20 SFSNL-PNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTTTG-TTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             HHcCC-CCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            44455 555555555555554444455555555555555443

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.38  E-value=9.9e-08  Score=87.35  Aligned_cols=86  Identities=28%  Similarity=0.362  Sum_probs=59.8

Q ss_pred             cCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhh
Q 045118           20 LGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTL   98 (221)
Q Consensus        20 l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l   98 (221)
                      +..|+.||.|++++|.  ....+|++++++-+|++|+++...    +++ +| .++.+ ..|.+|++..+......+...
T Consensus       567 f~~m~~LrVLDLs~~~--~l~~LP~~I~~Li~LryL~L~~t~----I~~-LP~~l~~L-k~L~~Lnl~~~~~l~~~~~i~  638 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNS--SLSKLPSSIGELVHLRYLDLSDTG----ISH-LPSGLGNL-KKLIYLNLEVTGRLESIPGIL  638 (889)
T ss_pred             HhhCcceEEEECCCCC--ccCcCChHHhhhhhhhcccccCCC----ccc-cchHHHHH-Hhhheeccccccccccccchh
Confidence            6778888888888775  667788888888888888887731    233 56 67777 778888887765433333344


Q ss_pred             ccCCCCcEEEecCCc
Q 045118           99 EKLPHLEVLKLKQNS  113 (221)
Q Consensus        99 ~~l~~L~~L~l~~~~  113 (221)
                      ..+++|++|.+....
T Consensus       639 ~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  639 LELQSLRVLRLPRSA  653 (889)
T ss_pred             hhcccccEEEeeccc
Confidence            457888888875544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.38  E-value=1.8e-06  Score=77.99  Aligned_cols=31  Identities=23%  Similarity=0.325  Sum_probs=18.2

Q ss_pred             CCCccEEEEEecCCccccchhHhhccCCCCcEEEeee
Q 045118           23 LPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVN   59 (221)
Q Consensus        23 l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~   59 (221)
                      .++|++|++++|.   ...+|..   .++|++|++..
T Consensus       241 p~~Lk~LdLs~N~---LtsLP~l---p~sL~~L~Ls~  271 (788)
T PRK15387        241 PPELRTLEVSGNQ---LTSLPVL---PPGLLELSIFS  271 (788)
T ss_pred             CCCCcEEEecCCc---cCcccCc---ccccceeeccC
Confidence            5778888888874   3334432   24555555554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.30  E-value=2.7e-07  Score=73.36  Aligned_cols=157  Identities=21%  Similarity=0.195  Sum_probs=93.4

Q ss_pred             cCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCcee-----eehhh------------cc---ccCcCCCC
Q 045118           20 LGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMW-----QLSRM------------IL---SEYKFPPS   79 (221)
Q Consensus        20 l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~L~~L------------lp---~l~~~~~~   79 (221)
                      +.-+.+|+.+.++.+.   ...+.+....-+.|+++.+.+.....     ....+            -|   .+... ..
T Consensus       210 l~~f~~l~~~~~s~~~---~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTW-q~  285 (490)
T KOG1259|consen  210 LNAFRNLKTLKFSALS---TENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTW-QE  285 (490)
T ss_pred             hHHhhhhheeeeeccc---hhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchH-hh
Confidence            3445677777777773   33444444445778888777631110     00110            01   12223 57


Q ss_pred             ccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEecccccccccee--------------
Q 045118           80 LTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWT--------------  145 (221)
Q Consensus        80 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~--------------  145 (221)
                      |+.+++++|.++.++ +...-.|.++.|+++.|++..  +. . ...+++|..|+|+++. +.++.              
T Consensus       286 LtelDLS~N~I~~iD-ESvKL~Pkir~L~lS~N~i~~--v~-n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  286 LTELDLSGNLITQID-ESVKLAPKLRRLILSQNRIRT--VQ-N-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhccccccchhhhh-hhhhhccceeEEeccccceee--eh-h-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeeh
Confidence            778888888877655 556667888888888777543  11 2 4456778888887764 22221              


Q ss_pred             --------eCCCCCCCccEEEecCCccccCcc--hhhccCCcCcEEEccCCC
Q 045118          146 --------MGAGAMPKLESLILNPCAYLRKLP--EELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       146 --------~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~l~l~~~~  187 (221)
                              ...+.+.+|..|+++++ .+..+.  .+|+++|+|+++.+.++|
T Consensus       360 a~N~iE~LSGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  360 AQNKIETLSGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hhhhHhhhhhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence                    12344666777777773 343332  368899999999998887

>PLN03150 hypothetical protein; Provisional

Probab=98.29  E-value=1.3e-06  Score=77.96  Aligned_cols=106  Identities=18%  Similarity=0.209  Sum_probs=66.0

Q ss_pred             ccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhhccCCCC
Q 045118           26 VRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHL  104 (221)
Q Consensus        26 Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L  104 (221)
                      ++.|+++++.  ..+.+|..++++++|+.|+++++    ++...+| .++.+ ++|+.|++++|.+....+..++.+++|
T Consensus       420 v~~L~L~~n~--L~g~ip~~i~~L~~L~~L~Ls~N----~l~g~iP~~~~~l-~~L~~LdLs~N~lsg~iP~~l~~L~~L  492 (623)
T PLN03150        420 IDGLGLDNQG--LRGFIPNDISKLRHLQSINLSGN----SIRGNIPPSLGSI-TSLEVLDLSYNSFNGSIPESLGQLTSL  492 (623)
T ss_pred             EEEEECCCCC--ccccCCHHHhCCCCCCEEECCCC----cccCcCChHHhCC-CCCCEEECCCCCCCCCCchHHhcCCCC
Confidence            5566666665  55667777777777777777763    1221155 56677 777777777777776555667777777


Q ss_pred             cEEEecCCccCCceeeeeCCCC-CCcccEEecccccc
Q 045118          105 EVLKLKQNSYLERKLACVGCSS-FSQLKILHLKSMLW  140 (221)
Q Consensus       105 ~~L~l~~~~~~~~~l~~~~~~~-~~~L~~L~L~~~~~  140 (221)
                      +.|++++|.+.+. +|.. +.. +.++..+++.++..
T Consensus       493 ~~L~Ls~N~l~g~-iP~~-l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        493 RILNLNGNSLSGR-VPAA-LGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CEEECcCCccccc-CChH-HhhccccCceEEecCCcc
Confidence            7777777765543 3332 222 23445566665543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.26  E-value=1.5e-07  Score=74.76  Aligned_cols=131  Identities=27%  Similarity=0.288  Sum_probs=93.2

Q ss_pred             CCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhhccCC
Q 045118           23 LPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLP  102 (221)
Q Consensus        23 l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~  102 (221)
                      -+.|.+++++.|   .+..+-++..-+|.++.|+++.|.    +.. +..++.+ ++|+.|++++|.+.... .+-..+.
T Consensus       283 Wq~LtelDLS~N---~I~~iDESvKL~Pkir~L~lS~N~----i~~-v~nLa~L-~~L~~LDLS~N~Ls~~~-Gwh~KLG  352 (490)
T KOG1259|consen  283 WQELTELDLSGN---LITQIDESVKLAPKLRRLILSQNR----IRT-VQNLAEL-PQLQLLDLSGNLLAECV-GWHLKLG  352 (490)
T ss_pred             Hhhhhhcccccc---chhhhhhhhhhccceeEEeccccc----eee-ehhhhhc-ccceEeecccchhHhhh-hhHhhhc
Confidence            357888888888   467777788888999999998742    111 3456667 88999999998877543 3444678


Q ss_pred             CCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce--eeCCCCCCCccEEEecCCccccCcc
Q 045118          103 HLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW--TMGAGAMPKLESLILNPCAYLRKLP  169 (221)
Q Consensus       103 ~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~--~~~~~~l~~L~~L~l~~~~~l~~~~  169 (221)
                      |.+.|.++.|.+..  +.  |.+.+-+|..|++.++. ++.+  ....|.+|-|+++.+.+++ ++.+|
T Consensus       353 NIKtL~La~N~iE~--LS--GL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~v  415 (490)
T KOG1259|consen  353 NIKTLKLAQNKIET--LS--GLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNP-LAGSV  415 (490)
T ss_pred             CEeeeehhhhhHhh--hh--hhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCC-ccccc
Confidence            88899998877533  22  25567788888888877 5555  3457888889988888854 34333

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.25  E-value=1.3e-07  Score=76.09  Aligned_cols=41  Identities=24%  Similarity=0.224  Sum_probs=21.9

Q ss_pred             hcCCCCCccEEEEEecCC--ccccchhHhhccCCCCcEEEeee
Q 045118           19 ILGRLPNVRTFRISGDLS--YYHSGVSKSLCKLHKLECLKLVN   59 (221)
Q Consensus        19 ~l~~l~~Lr~L~l~~~~~--~~~~~~~~~l~~l~~L~~L~l~~   59 (221)
                      .+..++.|++|+++.|..  .....+-+.+.....|++|++.+
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N  129 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNN  129 (382)
T ss_pred             HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhc
Confidence            344456666666666651  11223334455566666666665

>PLN03150 hypothetical protein; Provisional

Probab=98.24  E-value=2.8e-06  Score=75.75  Aligned_cols=104  Identities=21%  Similarity=0.200  Sum_probs=60.3

Q ss_pred             ccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEe
Q 045118           80 LTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLIL  159 (221)
Q Consensus        80 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l  159 (221)
                      ++.|++++|.+....+..++.+++|+.|++++|.+.+. ++.. ++.+++|+.|++++|.--..+|..++.+++|+.|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~-~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPS-LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChH-HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            45566666666654445666677777777766665433 4444 556667777777766622245555666777777777


Q ss_pred             cCCccccCcchhhccC-CcCcEEEccC
Q 045118          160 NPCAYLRKLPEELWCI-KSLCKLELHW  185 (221)
Q Consensus       160 ~~~~~l~~~~~~~~~l-~~L~~l~l~~  185 (221)
                      ++|.....+|..++.. .++..+++.+
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~  524 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTD  524 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecC
Confidence            7655444555554432 2334444443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=1.7e-07  Score=77.53  Aligned_cols=158  Identities=18%  Similarity=0.146  Sum_probs=107.1

Q ss_pred             CCCccEEEEEecCCccccchh--HhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCC-chhhc
Q 045118           23 LPNVRTFRISGDLSYYHSGVS--KSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDP-MPTLE   99 (221)
Q Consensus        23 l~~Lr~L~l~~~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~-~~~l~   99 (221)
                      +..||++.+.+..   ....+  +-...+++++.|+++.+--. +...+.....++ |+|+.|+++.|++.... -..-.
T Consensus       120 ~kkL~~IsLdn~~---V~~~~~~~~~k~~~~v~~LdLS~NL~~-nw~~v~~i~eqL-p~Le~LNls~Nrl~~~~~s~~~~  194 (505)
T KOG3207|consen  120 LKKLREISLDNYR---VEDAGIEEYSKILPNVRDLDLSRNLFH-NWFPVLKIAEQL-PSLENLNLSSNRLSNFISSNTTL  194 (505)
T ss_pred             HHhhhheeecCcc---ccccchhhhhhhCCcceeecchhhhHH-hHHHHHHHHHhc-ccchhcccccccccCCccccchh
Confidence            5678888888774   22222  45677899999999873000 001101245678 99999999999876322 11223


Q ss_pred             cCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcch--hhccCCc
Q 045118          100 KLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPE--ELWCIKS  177 (221)
Q Consensus       100 ~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~l~~  177 (221)
                      .+++|+.|.++.|++++..+... ...||+|+.|.+..+..+..-......++.|+.|++++++. -+++.  ..+.+|.
T Consensus       195 ~l~~lK~L~l~~CGls~k~V~~~-~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l-i~~~~~~~~~~l~~  272 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLSWKDVQWI-LLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL-IDFDQGYKVGTLPG  272 (505)
T ss_pred             hhhhhheEEeccCCCCHHHHHHH-HHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc-cccccccccccccc
Confidence            68899999999999886555555 66799999999998853333333444588999999999654 34442  3677888


Q ss_pred             CcEEEccCCC
Q 045118          178 LCKLELHWPQ  187 (221)
Q Consensus       178 L~~l~l~~~~  187 (221)
                      |.-+.+..+.
T Consensus       273 L~~Lnls~tg  282 (505)
T KOG3207|consen  273 LNQLNLSSTG  282 (505)
T ss_pred             hhhhhccccC
Confidence            8888777654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.08  E-value=1.3e-06  Score=73.63  Aligned_cols=154  Identities=24%  Similarity=0.304  Sum_probs=103.8

Q ss_pred             hcCCCCCccEEEEEecCCccccchhHhhccCC-CCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCch
Q 045118           19 ILGRLPNVRTFRISGDLSYYHSGVSKSLCKLH-KLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMP   96 (221)
Q Consensus        19 ~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~   96 (221)
                      .+..+++++.|.+.++   ....++.....++ +|+.|+++.+    +++. +| .+..+ ++|+.|++.+|.+...+ .
T Consensus       111 ~~~~~~~l~~L~l~~n---~i~~i~~~~~~~~~nL~~L~l~~N----~i~~-l~~~~~~l-~~L~~L~l~~N~l~~l~-~  180 (394)
T COG4886         111 ELLELTNLTSLDLDNN---NITDIPPLIGLLKSNLKELDLSDN----KIES-LPSPLRNL-PNLKNLDLSFNDLSDLP-K  180 (394)
T ss_pred             hhhcccceeEEecCCc---ccccCccccccchhhccccccccc----chhh-hhhhhhcc-ccccccccCCchhhhhh-h
Confidence            3444566777777777   3566666667674 8888888774    2233 44 66777 88888888888887654 2


Q ss_pred             hhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCC
Q 045118           97 TLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIK  176 (221)
Q Consensus        97 ~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~  176 (221)
                      ..+..++|+.|++++|.+..  ++.. .+....|+++.+.++. +...+.....+..+..+.+.+ ..+..++..++.++
T Consensus       181 ~~~~~~~L~~L~ls~N~i~~--l~~~-~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~  255 (394)
T COG4886         181 LLSNLSNLNNLDLSGNKISD--LPPE-IELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSN-NKLEDLPESIGNLS  255 (394)
T ss_pred             hhhhhhhhhheeccCCcccc--Cchh-hhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCC-ceeeeccchhcccc
Confidence            33378888888888887765  4433 3344558888888775 444555556677777777555 44555566678888


Q ss_pred             cCcEEEccCCC
Q 045118          177 SLCKLELHWPQ  187 (221)
Q Consensus       177 ~L~~l~l~~~~  187 (221)
                      .++++++..+.
T Consensus       256 ~l~~L~~s~n~  266 (394)
T COG4886         256 NLETLDLSNNQ  266 (394)
T ss_pred             ccceecccccc
Confidence            88888888764

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.08  E-value=2.6e-07  Score=78.82  Aligned_cols=154  Identities=21%  Similarity=0.281  Sum_probs=117.7

Q ss_pred             ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCC
Q 045118           16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDP   94 (221)
Q Consensus        16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~   94 (221)
                      +|+.++++..|..++++.|.   ...+|..++.++ |+.|-++++    ++.. +| .++.. +.|..|+.+.|.+...+
T Consensus       113 ip~~i~~L~~lt~l~ls~Nq---lS~lp~~lC~lp-Lkvli~sNN----kl~~-lp~~ig~~-~tl~~ld~s~nei~slp  182 (722)
T KOG0532|consen  113 IPEAICNLEALTFLDLSSNQ---LSHLPDGLCDLP-LKVLIVSNN----KLTS-LPEEIGLL-PTLAHLDVSKNEIQSLP  182 (722)
T ss_pred             cchhhhhhhHHHHhhhccch---hhcCChhhhcCc-ceeEEEecC----cccc-CCcccccc-hhHHHhhhhhhhhhhch
Confidence            88889999999999999995   678899999887 889988884    2233 67 77877 89999999999987665


Q ss_pred             chhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhh--
Q 045118           95 MPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEL--  172 (221)
Q Consensus        95 ~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~--  172 (221)
                       .-++.+..|+.|.+..|+...  ++.+ ...+ .|..|+++.+. +..+|..+..|.+|+.|-+.+++ +.+-|..|  
T Consensus       183 -sql~~l~slr~l~vrRn~l~~--lp~E-l~~L-pLi~lDfScNk-is~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~  255 (722)
T KOG0532|consen  183 -SQLGYLTSLRDLNVRRNHLED--LPEE-LCSL-PLIRLDFSCNK-ISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICE  255 (722)
T ss_pred             -HHhhhHHHHHHHHHhhhhhhh--CCHH-HhCC-ceeeeecccCc-eeecchhhhhhhhheeeeeccCC-CCCChHHHHh
Confidence             567889999999998888654  5555 5444 47888888766 89999999999999999998744 55555432  


Q ss_pred             -ccCCcCcEEEccCC
Q 045118          173 -WCIKSLCKLELHWP  186 (221)
Q Consensus       173 -~~l~~L~~l~l~~~  186 (221)
                       +.+--.++|++..|
T Consensus       256 kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  256 KGKVHIFKYLSTQAC  270 (722)
T ss_pred             ccceeeeeeecchhc
Confidence             22333456666655

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.78  E-value=1.3e-05  Score=71.97  Aligned_cols=133  Identities=19%  Similarity=0.231  Sum_probs=82.8

Q ss_pred             CCCcEEEeeecCceeeehhhcc--c---cCcCCCCccEEEeecccCCCCCc-hhhccCCCCcEEEecCCccCCceeeeeC
Q 045118           50 HKLECLKLVNKGKMWQLSRMIL--S---EYKFPPSLTQLSLSNTELMEDPM-PTLEKLPHLEVLKLKQNSYLERKLACVG  123 (221)
Q Consensus        50 ~~L~~L~l~~~~~~~~L~~Llp--~---l~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~l~~~~  123 (221)
                      .+|++|+|+|.      +. +.  |   ++.+.|+|+.|.+.+-.+..... ....++|||+.|++++.++..  +  .|
T Consensus       122 ~nL~~LdI~G~------~~-~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n--l--~G  190 (699)
T KOG3665|consen  122 QNLQHLDISGS------EL-FSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN--L--SG  190 (699)
T ss_pred             HhhhhcCcccc------ch-hhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC--c--HH
Confidence            77888888773      11 22  3   44444899999888876654432 345578999999998887655  2  22


Q ss_pred             CCCCCcccEEecccccccccee--eCCCCCCCccEEEecCCccccCc--c----hhhccCCcCcEEEccCC--CHHHHHH
Q 045118          124 CSSFSQLKILHLKSMLWLEEWT--MGAGAMPKLESLILNPCAYLRKL--P----EELWCIKSLCKLELHWP--QPELRQR  193 (221)
Q Consensus       124 ~~~~~~L~~L~L~~~~~l~~~~--~~~~~l~~L~~L~l~~~~~l~~~--~----~~~~~l~~L~~l~l~~~--~~~~~~~  193 (221)
                      .+.+++|+.|.+.+.. ++...  ..+-.+.+|+.|+++.-.....-  .    ..-..+|.|+.|+.++-  ..++++.
T Consensus       191 IS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~  269 (699)
T KOG3665|consen  191 ISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEE  269 (699)
T ss_pred             HhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHH
Confidence            6678888888877766 33321  12334788999999874332211  1    11234788888888763  3444444


Q ss_pred             h
Q 045118          194 L  194 (221)
Q Consensus       194 l  194 (221)
                      +
T Consensus       270 l  270 (699)
T KOG3665|consen  270 L  270 (699)
T ss_pred             H
Confidence            3

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.76  E-value=1.3e-05  Score=71.96  Aligned_cols=130  Identities=19%  Similarity=0.256  Sum_probs=65.4

Q ss_pred             CCccEEEEEecCCccccchhHhh-ccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhhccCC
Q 045118           24 PNVRTFRISGDLSYYHSGVSKSL-CKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLP  102 (221)
Q Consensus        24 ~~Lr~L~l~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~  102 (221)
                      +||++|++++... ....=+..+ ..+|.|++|.+.+-.-.  -.++.....+| |+|..||++++.+...  .++++++
T Consensus       122 ~nL~~LdI~G~~~-~s~~W~~kig~~LPsL~sL~i~~~~~~--~~dF~~lc~sF-pNL~sLDIS~TnI~nl--~GIS~Lk  195 (699)
T KOG3665|consen  122 QNLQHLDISGSEL-FSNGWPKKIGTMLPSLRSLVISGRQFD--NDDFSQLCASF-PNLRSLDISGTNISNL--SGISRLK  195 (699)
T ss_pred             HhhhhcCccccch-hhccHHHHHhhhCcccceEEecCceec--chhHHHHhhcc-CccceeecCCCCccCc--HHHhccc
Confidence            4677777766532 122222333 33577777777761000  00001133456 7777777777776543  5667777


Q ss_pred             CCcEEEecCCccCC-ceeeeeCCCCCCcccEEeccccccccce------eeCCCCCCCccEEEecC
Q 045118          103 HLEVLKLKQNSYLE-RKLACVGCSSFSQLKILHLKSMLWLEEW------TMGAGAMPKLESLILNP  161 (221)
Q Consensus       103 ~L~~L~l~~~~~~~-~~l~~~~~~~~~~L~~L~L~~~~~l~~~------~~~~~~l~~L~~L~l~~  161 (221)
                      +|+.|.+.+=.+.. ..+. . ...+.+|+.|+++.-.....-      ......+|.|+.|+.++
T Consensus       196 nLq~L~mrnLe~e~~~~l~-~-LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  196 NLQVLSMRNLEFESYQDLI-D-LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             cHHHHhccCCCCCchhhHH-H-HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence            77777773322221 1011 1 335677777777644321111      11122367777777665

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.70  E-value=7.7e-07  Score=78.14  Aligned_cols=106  Identities=26%  Similarity=0.360  Sum_probs=68.3

Q ss_pred             cCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCC
Q 045118           73 EYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMP  152 (221)
Q Consensus        73 l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~  152 (221)
                      +.-+ +.++.|++++|.+..-  ..+..+++|++|+++.|+...  ++..+..+. .|..|.+.+|. ++++. .+.++.
T Consensus       183 Lqll-~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~--vp~l~~~gc-~L~~L~lrnN~-l~tL~-gie~Lk  254 (1096)
T KOG1859|consen  183 LQLL-PALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH--VPQLSMVGC-KLQLLNLRNNA-LTTLR-GIENLK  254 (1096)
T ss_pred             HHHH-HHhhhhccchhhhhhh--HHHHhcccccccccccchhcc--ccccchhhh-hheeeeecccH-HHhhh-hHHhhh
Confidence            3445 6778888888887643  367778888888888887543  332212223 37888888777 55553 344678


Q ss_pred             CccEEEecCCccccCcch--hhccCCcCcEEEccCCC
Q 045118          153 KLESLILNPCAYLRKLPE--ELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       153 ~L~~L~l~~~~~l~~~~~--~~~~l~~L~~l~l~~~~  187 (221)
                      +|+.|+++++ .+..+-.  -+..+..|..|.+.++|
T Consensus       255 sL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  255 SLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             hhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            8888888873 3332211  24667778888888876

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.68  E-value=2.4e-05  Score=72.01  Aligned_cols=154  Identities=22%  Similarity=0.164  Sum_probs=101.9

Q ss_pred             CCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCCCchhhccC
Q 045118           24 PNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMEDPMPTLEKL  101 (221)
Q Consensus        24 ~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l  101 (221)
                      ...|...+-++.   ...++.... .++|++|-+..+...  +.. ++  ++..+ +.|+.||+++|.--..-|..++.+
T Consensus       523 ~~~rr~s~~~~~---~~~~~~~~~-~~~L~tLll~~n~~~--l~~-is~~ff~~m-~~LrVLDLs~~~~l~~LP~~I~~L  594 (889)
T KOG4658|consen  523 NSVRRMSLMNNK---IEHIAGSSE-NPKLRTLLLQRNSDW--LLE-ISGEFFRSL-PLLRVLDLSGNSSLSKLPSSIGEL  594 (889)
T ss_pred             hheeEEEEeccc---hhhccCCCC-CCccceEEEeecchh--hhh-cCHHHHhhC-cceEEEECCCCCccCcCChHHhhh
Confidence            445566555553   223333322 346888888773110  122 34  57888 999999999876444445788899


Q ss_pred             CCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCc-ccc-CcchhhccCCcCc
Q 045118          102 PHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCA-YLR-KLPEELWCIKSLC  179 (221)
Q Consensus       102 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~-~l~-~~~~~~~~l~~L~  179 (221)
                      -+|++|++++..+..  +|.. ++.+.+|.+|+++.+..+..++.....+++|++|.+..-. ..+ ..-..+..+.+|+
T Consensus       595 i~LryL~L~~t~I~~--LP~~-l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~  671 (889)
T KOG4658|consen  595 VHLRYLDLSDTGISH--LPSG-LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE  671 (889)
T ss_pred             hhhhcccccCCCccc--cchH-HHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchh
Confidence            999999998888775  7766 8889999999998877666665555568999999988633 111 1122456677777


Q ss_pred             EEEccCCCH
Q 045118          180 KLELHWPQP  188 (221)
Q Consensus       180 ~l~l~~~~~  188 (221)
                      .+.++..+.
T Consensus       672 ~ls~~~~s~  680 (889)
T KOG4658|consen  672 NLSITISSV  680 (889)
T ss_pred             hheeecchh
Confidence            777765543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.62  E-value=4.4e-06  Score=68.63  Aligned_cols=107  Identities=21%  Similarity=0.226  Sum_probs=54.0

Q ss_pred             CCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCCCCCcc
Q 045118           77 PPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGAMPKLE  155 (221)
Q Consensus        77 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~  155 (221)
                      |+.-..+.+..|.++.+|..+++.+++|+.|+++.|.+... -+.. +.++++|.+|-+.+.+++.+++.. ++.+.+|+
T Consensus        66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-~p~A-F~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq  143 (498)
T KOG4237|consen   66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI-APDA-FKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ  143 (498)
T ss_pred             CCcceEEEeccCCcccCChhhccchhhhceecccccchhhc-ChHh-hhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence            45555566666666666666666666666666666655431 2223 445555555555554446655432 44455555


Q ss_pred             EEEecCCccccCcchhhccCCcCcEEEccC
Q 045118          156 SLILNPCAYLRKLPEELWCIKSLCKLELHW  185 (221)
Q Consensus       156 ~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~  185 (221)
                      .|.+.-|..-......+..++++..|.+.+
T Consensus       144 rLllNan~i~Cir~~al~dL~~l~lLslyD  173 (498)
T KOG4237|consen  144 RLLLNANHINCIRQDALRDLPSLSLLSLYD  173 (498)
T ss_pred             HHhcChhhhcchhHHHHHHhhhcchhcccc
Confidence            555543221111122344455554444444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.55  E-value=0.00011  Score=41.64  Aligned_cols=38  Identities=39%  Similarity=0.682  Sum_probs=26.4

Q ss_pred             CCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCC
Q 045118           78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLE  116 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  116 (221)
                      ++|++|++++|.+...+ +.++.+++|+.|++++|.+..
T Consensus         1 ~~L~~L~l~~N~i~~l~-~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLP-PELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-SSHG-GHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCcccC-chHhCCCCCCEEEecCCCCCC
Confidence            46888888888887544 347788888888887777653

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.49  E-value=2.6e-05  Score=63.13  Aligned_cols=112  Identities=20%  Similarity=0.126  Sum_probs=57.0

Q ss_pred             cCcCCCCccEEEeecccCCCCCchh-------------hccCCCCcEEEecCCccCCceeee---eCCCCCCcccEEecc
Q 045118           73 EYKFPPSLTQLSLSNTELMEDPMPT-------------LEKLPHLEVLKLKQNSYLERKLAC---VGCSSFSQLKILHLK  136 (221)
Q Consensus        73 l~~~~~~L~~L~l~~~~~~~~~~~~-------------l~~l~~L~~L~l~~~~~~~~~l~~---~~~~~~~~L~~L~L~  136 (221)
                      +.+. ..|++|.+.+|++....-..             .+.-+.|+.+...+|+.-......   . +...+.|+.+.+.
T Consensus       116 l~s~-~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~-~~~~~~leevr~~  193 (382)
T KOG1909|consen  116 LSSC-TDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEA-FQSHPTLEEVRLS  193 (382)
T ss_pred             HHhc-cCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHH-HHhccccceEEEe
Confidence            3444 56666666666654322111             123356666666655543221111   1 1223566666666


Q ss_pred             cccccc--ce---eeCCCCCCCccEEEecCCcccc----CcchhhccCCcCcEEEccCCC
Q 045118          137 SMLWLE--EW---TMGAGAMPKLESLILNPCAYLR----KLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       137 ~~~~l~--~~---~~~~~~l~~L~~L~l~~~~~l~----~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      .+. +.  ++   ...+..+|+|+.|++.++..-.    .+...+...+.|.++++.+|-
T Consensus       194 qN~-I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl  252 (382)
T KOG1909|consen  194 QNG-IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL  252 (382)
T ss_pred             ccc-ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence            554 21  11   1223457888888888743211    122245667778888888775

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.44  E-value=0.00027  Score=53.35  Aligned_cols=66  Identities=26%  Similarity=0.173  Sum_probs=30.9

Q ss_pred             ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccc
Q 045118           72 SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSML  139 (221)
Q Consensus        72 ~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~  139 (221)
                      .+..+ +.|..|.+.+|+++.+.+.--..+++|..|.+.+|.+..-.--.. ...+|+|+.|.+-+++
T Consensus        59 ~lp~l-~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen   59 NLPHL-PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNP  124 (233)
T ss_pred             cCCCc-cccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCc
Confidence            34444 555666666665554442222234556666665555432100001 3345555555555554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.43  E-value=0.00016  Score=57.74  Aligned_cols=39  Identities=23%  Similarity=0.337  Sum_probs=30.4

Q ss_pred             CCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeec
Q 045118           22 RLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNK   60 (221)
Q Consensus        22 ~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~   60 (221)
                      .++.++++++.+|....+.++-..+.++|.|+.|+++.|
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N  107 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN  107 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC
Confidence            367888888888874456667777888899999998874

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.30  E-value=3.8e-05  Score=65.33  Aligned_cols=103  Identities=26%  Similarity=0.296  Sum_probs=52.5

Q ss_pred             hccCCCCcEEEeeecCceeeehhhccc-cCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCC
Q 045118           46 LCKLHKLECLKLVNKGKMWQLSRMILS-EYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGC  124 (221)
Q Consensus        46 l~~l~~L~~L~l~~~~~~~~L~~Llp~-l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~  124 (221)
                      +..+.+|+.|++..+    ++++ +.. +..+ ++|++|++++|.+...  ..+..++.|+.|++++|.+..  +. . +
T Consensus        91 l~~~~~l~~l~l~~n----~i~~-i~~~l~~~-~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~--~~-~-~  158 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDN----KIEK-IENLLSSL-VNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISD--IS-G-L  158 (414)
T ss_pred             cccccceeeeecccc----chhh-cccchhhh-hcchheeccccccccc--cchhhccchhhheeccCcchh--cc-C-C
Confidence            555666666666553    2222 333 4555 6666666666666543  244555556666666665543  11 1 2


Q ss_pred             CCCCcccEEeccccccccceeeC-CCCCCCccEEEecC
Q 045118          125 SSFSQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNP  161 (221)
Q Consensus       125 ~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~l~~  161 (221)
                      ..++.|+.+++.++. +..+... ...+.+++.+.+.+
T Consensus       159 ~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~  195 (414)
T KOG0531|consen  159 ESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGG  195 (414)
T ss_pred             ccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccC
Confidence            235566666665555 3333321 23345555555554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.30  E-value=0.00031  Score=39.84  Aligned_cols=34  Identities=29%  Similarity=0.346  Sum_probs=14.9

Q ss_pred             CCcEEEecCCccCCceeeeeCCCCCCcccEEeccccc
Q 045118          103 HLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSML  139 (221)
Q Consensus       103 ~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~  139 (221)
                      +|++|++++|.+..  ++.. ++.+++|+.|++++|+
T Consensus         2 ~L~~L~l~~N~i~~--l~~~-l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    2 NLEELDLSNNQITD--LPPE-LSNLPNLETLNLSNNP   35 (44)
T ss_dssp             T-SEEEETSSS-SS--HGGH-GTTCTTSSEEEETSSC
T ss_pred             cceEEEccCCCCcc--cCch-HhCCCCCCEEEecCCC
Confidence            44555555544443  3333 3445555555555444

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.29  E-value=5.9e-06  Score=72.79  Aligned_cols=110  Identities=25%  Similarity=0.228  Sum_probs=79.2

Q ss_pred             hhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchh
Q 045118           18 DILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPT   97 (221)
Q Consensus        18 ~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~   97 (221)
                      +.+.-++.++.|++++|.  .. . .+.++.+++|++|||+.|    .|++ +|.++.--.+|+.|.+++|.++..  ..
T Consensus       181 ~SLqll~ale~LnLshNk--~~-~-v~~Lr~l~~LkhLDlsyN----~L~~-vp~l~~~gc~L~~L~lrnN~l~tL--~g  249 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNK--FT-K-VDNLRRLPKLKHLDLSYN----CLRH-VPQLSMVGCKLQLLNLRNNALTTL--RG  249 (1096)
T ss_pred             HHHHHHHHhhhhccchhh--hh-h-hHHHHhcccccccccccc----hhcc-ccccchhhhhheeeeecccHHHhh--hh
Confidence            345556788999999996  32 2 348889999999999985    4455 775443313599999999988743  57


Q ss_pred             hccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccc
Q 045118           98 LEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSML  139 (221)
Q Consensus        98 l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~  139 (221)
                      +.++.+|+.|+++.|.+.+-.--.. ...+..|+.|+|.+|+
T Consensus       250 ie~LksL~~LDlsyNll~~hseL~p-LwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  250 IENLKSLYGLDLSYNLLSEHSELEP-LWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             HHhhhhhhccchhHhhhhcchhhhH-HHHHHHHHHHhhcCCc
Confidence            7889999999999988654211112 3456788899998887

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.26  E-value=3.1e-05  Score=65.85  Aligned_cols=85  Identities=21%  Similarity=0.324  Sum_probs=47.9

Q ss_pred             cCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhhc
Q 045118           20 LGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLE   99 (221)
Q Consensus        20 l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l~   99 (221)
                      ++.+++|+.|++..+.   ...+...+..+++|++|+++++    .+.+ +..+..+ +.|+.|++.+|.+..+.  .+.
T Consensus        91 l~~~~~l~~l~l~~n~---i~~i~~~l~~~~~L~~L~ls~N----~I~~-i~~l~~l-~~L~~L~l~~N~i~~~~--~~~  159 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNK---IEKIENLLSSLVNLQVLDLSFN----KITK-LEGLSTL-TLLKELNLSGNLISDIS--GLE  159 (414)
T ss_pred             cccccceeeeeccccc---hhhcccchhhhhcchheecccc----cccc-ccchhhc-cchhhheeccCcchhcc--CCc
Confidence            6667777777777774   3333333566777777777763    1122 3344444 55666666666655432  444


Q ss_pred             cCCCCcEEEecCCccC
Q 045118          100 KLPHLEVLKLKQNSYL  115 (221)
Q Consensus       100 ~l~~L~~L~l~~~~~~  115 (221)
                      .+++|+.+++++|.+.
T Consensus       160 ~l~~L~~l~l~~n~i~  175 (414)
T KOG0531|consen  160 SLKSLKLLDLSYNRIV  175 (414)
T ss_pred             cchhhhcccCCcchhh
Confidence            4566666666555543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.15  E-value=2e-05  Score=55.91  Aligned_cols=101  Identities=25%  Similarity=0.197  Sum_probs=58.8

Q ss_pred             ccEEEeecccCCCCC--chhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEE
Q 045118           80 LTQLSLSNTELMEDP--MPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESL  157 (221)
Q Consensus        80 L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L  157 (221)
                      +..++++.|.+....  +..+....+|+..++++|.+..  ++......||-.+.+++.++. +.++|.++.++|.|+.+
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~--fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK--FPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhh--CCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhc
Confidence            334556666544221  2234455566667777776654  332212346677777777766 77777777777777777


Q ss_pred             EecCCccccCcchhhccCCcCcEEEcc
Q 045118          158 ILNPCAYLRKLPEELWCIKSLCKLELH  184 (221)
Q Consensus       158 ~l~~~~~l~~~~~~~~~l~~L~~l~l~  184 (221)
                      +++. +.+...|..+..+.++-.|+..
T Consensus       106 Nl~~-N~l~~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen  106 NLRF-NPLNAEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             cccc-CccccchHHHHHHHhHHHhcCC
Confidence            7776 4455556555555555555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.14  E-value=0.0024  Score=53.80  Aligned_cols=57  Identities=12%  Similarity=0.141  Sum_probs=33.4

Q ss_pred             cCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecc
Q 045118           20 LGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNT   88 (221)
Q Consensus        20 l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~   88 (221)
                      +..+.+++.|+++++   ....+|.   --++|++|.+++..   +|.. +|  ..+|++|++|++++|
T Consensus        48 ~~~~~~l~~L~Is~c---~L~sLP~---LP~sLtsL~Lsnc~---nLts-LP--~~LP~nLe~L~Ls~C  104 (426)
T PRK15386         48 IEEARASGRLYIKDC---DIESLPV---LPNELTEITIENCN---NLTT-LP--GSIPEGLEKLTVCHC  104 (426)
T ss_pred             HHHhcCCCEEEeCCC---CCcccCC---CCCCCcEEEccCCC---Cccc-CC--chhhhhhhheEccCc
Confidence            444788888888877   3555551   12468888887521   1121 33  123467777777776

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.13  E-value=0.00019  Score=59.67  Aligned_cols=117  Identities=22%  Similarity=0.323  Sum_probs=61.4

Q ss_pred             CCccEEEeeccc-CCCCCchhhc-cCCCCcEEEecCCccCCc-eeeeeCCCCCCcccEEeccccccccce-----eeCCC
Q 045118           78 PSLTQLSLSNTE-LMEDPMPTLE-KLPHLEVLKLKQNSYLER-KLACVGCSSFSQLKILHLKSMLWLEEW-----TMGAG  149 (221)
Q Consensus        78 ~~L~~L~l~~~~-~~~~~~~~l~-~l~~L~~L~l~~~~~~~~-~l~~~~~~~~~~L~~L~L~~~~~l~~~-----~~~~~  149 (221)
                      ++|+.|.+++|. ++......++ +++.|+.+++.++....+ .+... ..+.+.|+.+.++.|..+++-     .....
T Consensus       320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl-s~~C~~lr~lslshce~itD~gi~~l~~~~c  398 (483)
T KOG4341|consen  320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL-SRNCPRLRVLSLSHCELITDEGIRHLSSSSC  398 (483)
T ss_pred             CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh-ccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence            566666666554 2222233333 355666666644442211 12222 334667777777766533332     11123


Q ss_pred             CCCCccEEEecCCccccCcch-hhccCCcCcEEEccCCCHHHHHHhh
Q 045118          150 AMPKLESLILNPCAYLRKLPE-ELWCIKSLCKLELHWPQPELRQRLR  195 (221)
Q Consensus       150 ~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~l~l~~~~~~~~~~l~  195 (221)
                      .+..|..+.+++|+.+.+-.. -+..++.|+.+++.+|..-..+.++
T Consensus       399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~  445 (483)
T KOG4341|consen  399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAIS  445 (483)
T ss_pred             cccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhH
Confidence            356677777777776554322 3567788888888877644444333

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.00  E-value=0.00071  Score=54.15  Aligned_cols=158  Identities=21%  Similarity=0.278  Sum_probs=91.9

Q ss_pred             ChhhcCCCCCccEEEEEecCCccccchhHhh-ccCCCCcEEEeeecCcee-eehhhccccCcCCCCccEEEeeccc----
Q 045118           16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSL-CKLHKLECLKLVNKGKMW-QLSRMILSEYKFPPSLTQLSLSNTE----   89 (221)
Q Consensus        16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~-~L~~Llp~l~~~~~~L~~L~l~~~~----   89 (221)
                      +...+.+|+.|+.|+++.|.   ......++ ..+.+|++|-+.+.+-+| +++.   ++..+ |.++.|+++.|.    
T Consensus        89 I~~ile~lP~l~~LNls~N~---L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s---~l~~l-P~vtelHmS~N~~rq~  161 (418)
T KOG2982|consen   89 IGAILEQLPALTTLNLSCNS---LSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTS---SLDDL-PKVTELHMSDNSLRQL  161 (418)
T ss_pred             HHHHHhcCccceEeeccCCc---CCCccccCcccccceEEEEEcCCCCChhhhhh---hhhcc-hhhhhhhhccchhhhh
Confidence            44557889999999999995   22222333 467889999998743322 1111   23334 455555555442    


Q ss_pred             ------CCCCCc-------------------hhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce
Q 045118           90 ------LMEDPM-------------------PTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW  144 (221)
Q Consensus        90 ------~~~~~~-------------------~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~  144 (221)
                            ...+..                   .--..+||+..+.+..|.+....-... .+.+|.+--|+|..+. +.+|
T Consensus       162 n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~-se~~p~~~~LnL~~~~-idsw  239 (418)
T KOG2982|consen  162 NLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKG-SEPFPSLSCLNLGANN-IDSW  239 (418)
T ss_pred             ccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhccc-CCCCCcchhhhhcccc-cccH
Confidence                  111110                   011235677777776665544322222 4567777777777665 6666


Q ss_pred             e--eCCCCCCCccEEEecCCccccCcch------hhccCCcCcEEE
Q 045118          145 T--MGAGAMPKLESLILNPCAYLRKLPE------ELWCIKSLCKLE  182 (221)
Q Consensus       145 ~--~~~~~l~~L~~L~l~~~~~l~~~~~------~~~~l~~L~~l~  182 (221)
                      .  .....|++|..|.+++++-...+.-      -++.+++++.|.
T Consensus       240 asvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  240 ASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             HHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            3  3456799999999988765443322      256777776664

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.87  E-value=6.5e-05  Score=59.37  Aligned_cols=112  Identities=27%  Similarity=0.260  Sum_probs=67.9

Q ss_pred             CCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC--CCCCCCcc
Q 045118           78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG--AGAMPKLE  155 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~--~~~l~~L~  155 (221)
                      .+.++|+..+|+++++  .....|+.|+.|.|+-|.++.  +. . +..+++|++|.|..+. +.++...  +..+|+|+
T Consensus        19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss--L~-p-l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS--LA-P-LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLR   91 (388)
T ss_pred             HHhhhhcccCCCccHH--HHHHhcccceeEEeecccccc--ch-h-HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhh
Confidence            5667777777777533  355567777777777777654  22 1 3356677777776665 4444222  34577788


Q ss_pred             EEEecCCccccCcch-----hhccCCcCcEEEccCCC-HHHHHHhhh
Q 045118          156 SLILNPCAYLRKLPE-----ELWCIKSLCKLELHWPQ-PELRQRLRA  196 (221)
Q Consensus       156 ~L~l~~~~~l~~~~~-----~~~~l~~L~~l~l~~~~-~~~~~~l~~  196 (221)
                      .|.+..++.....+.     .+..+|+|+.|+-...- .+..+.++.
T Consensus        92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~VteeEle~ALr~  138 (388)
T KOG2123|consen   92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTEEELEEALRD  138 (388)
T ss_pred             hHhhccCCcccccchhHHHHHHHHcccchhccCccccHHHHHHHHhc
Confidence            888777665554433     35667777777655433 344444443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.73  E-value=0.00011  Score=52.11  Aligned_cols=106  Identities=23%  Similarity=0.301  Sum_probs=64.0

Q ss_pred             CCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCCCchhhccC
Q 045118           24 PNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMEDPMPTLEKL  101 (221)
Q Consensus        24 ~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l  101 (221)
                      ..++.++++.+........+..+....+|...++++|    .+++ +|  +...+ +.++.|++.+|.+.+.|. .+..+
T Consensus        27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N----~fk~-fp~kft~kf-~t~t~lNl~~neisdvPe-E~Aam   99 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN----GFKK-FPKKFTIKF-PTATTLNLANNEISDVPE-ELAAM   99 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccc----hhhh-CCHHHhhcc-chhhhhhcchhhhhhchH-HHhhh
Confidence            3466777777741112223334455566777777774    2344 45  33444 678888888888876664 47788


Q ss_pred             CCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccc
Q 045118          102 PHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSML  139 (221)
Q Consensus       102 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~  139 (221)
                      +.|+.++++.|.+...  +.. +..+.+|..|+..++.
T Consensus       100 ~aLr~lNl~~N~l~~~--p~v-i~~L~~l~~Lds~~na  134 (177)
T KOG4579|consen  100 PALRSLNLRFNPLNAE--PRV-IAPLIKLDMLDSPENA  134 (177)
T ss_pred             HHhhhcccccCccccc--hHH-HHHHHhHHHhcCCCCc
Confidence            8888888887776652  222 3335566666655554

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.69  E-value=0.0037  Score=52.73  Aligned_cols=58  Identities=14%  Similarity=0.178  Sum_probs=38.1

Q ss_pred             hccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCc
Q 045118           46 LCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNS  113 (221)
Q Consensus        46 l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  113 (221)
                      +..+.++++|+++++    .|.. +|   .+|++|+.|++++|.--...+..+  .++|++|.+++|.
T Consensus        48 ~~~~~~l~~L~Is~c----~L~s-LP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs  105 (426)
T PRK15386         48 IEEARASGRLYIKDC----DIES-LP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCP  105 (426)
T ss_pred             HHHhcCCCEEEeCCC----CCcc-cC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcc
Confidence            556789999999873    1222 44   566789999998865322222222  3589999997663

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.63  E-value=0.00093  Score=52.24  Aligned_cols=82  Identities=24%  Similarity=0.201  Sum_probs=40.9

Q ss_pred             CCccEEEeecc--cCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceee----CCCCC
Q 045118           78 PSLTQLSLSNT--ELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTM----GAGAM  151 (221)
Q Consensus        78 ~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~----~~~~l  151 (221)
                      ++|++|.++.|  +....-......+|+|++++++.|.+....-.-. ...+++|..|++.+|. ...+..    -+.-+
T Consensus        65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL~~Ldl~n~~-~~~l~dyre~vf~ll  142 (260)
T KOG2739|consen   65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELENLKSLDLFNCS-VTNLDDYREKVFLLL  142 (260)
T ss_pred             chhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcchhhhhcccCC-ccccccHHHHHHHHh
Confidence            67777777776  3321111122345777777777776542111112 4456666677766665 222211    12235


Q ss_pred             CCccEEEecC
Q 045118          152 PKLESLILNP  161 (221)
Q Consensus       152 ~~L~~L~l~~  161 (221)
                      |+|+.++-..
T Consensus       143 ~~L~~LD~~d  152 (260)
T KOG2739|consen  143 PSLKYLDGCD  152 (260)
T ss_pred             hhhccccccc
Confidence            6666555544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.41  E-value=0.0077  Score=45.67  Aligned_cols=108  Identities=24%  Similarity=0.305  Sum_probs=73.2

Q ss_pred             CCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCC-chhhccC
Q 045118           23 LPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDP-MPTLEKL  101 (221)
Q Consensus        23 l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~-~~~l~~l  101 (221)
                      ..+...++++.|..   .. ...|..+++|.+|.+..|    .+..+=|.+..+.++|+.|.+.+|++.+.. +..+..+
T Consensus        41 ~d~~d~iDLtdNdl---~~-l~~lp~l~rL~tLll~nN----rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~  112 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDL---RK-LDNLPHLPRLHTLLLNNN----RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASC  112 (233)
T ss_pred             ccccceecccccch---hh-cccCCCccccceEEecCC----cceeeccchhhhccccceEEecCcchhhhhhcchhccC
Confidence            34666778877752   22 234457899999999884    112212455555489999999999887532 4577889


Q ss_pred             CCCcEEEecCCccCCce--eeeeCCCCCCcccEEeccccc
Q 045118          102 PHLEVLKLKQNSYLERK--LACVGCSSFSQLKILHLKSML  139 (221)
Q Consensus       102 ~~L~~L~l~~~~~~~~~--l~~~~~~~~~~L~~L~L~~~~  139 (221)
                      |.|++|.+-+|......  =-+. +..+|+|+.|++.+-.
T Consensus       113 p~L~~Ltll~Npv~~k~~YR~yv-l~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  113 PKLEYLTLLGNPVEHKKNYRLYV-LYKLPSLRTLDFQKVT  151 (233)
T ss_pred             CccceeeecCCchhcccCceeEE-EEecCcceEeehhhhh
Confidence            99999999888765321  1123 4468999999987654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.33  E-value=0.0035  Score=49.73  Aligned_cols=45  Identities=18%  Similarity=0.210  Sum_probs=30.1

Q ss_pred             ChhhcCCCCCccEEEEEecCC--ccccchhHhhccCCCCcEEEeeec
Q 045118           16 TPDILGRLPNVRTFRISGDLS--YYHSGVSKSLCKLHKLECLKLVNK   60 (221)
Q Consensus        16 ~~~~l~~l~~Lr~L~l~~~~~--~~~~~~~~~l~~l~~L~~L~l~~~   60 (221)
                      ..+.+.+|+.|+..+++.|..  .....+.+.+...+.|++|.++++
T Consensus        84 Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn  130 (388)
T COG5238          84 LLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN  130 (388)
T ss_pred             HHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence            345677788888888888861  122233345566788888888874

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.99  E-value=0.0031  Score=49.36  Aligned_cols=82  Identities=22%  Similarity=0.233  Sum_probs=43.8

Q ss_pred             CCCccEEEEEecCCccccchhHhhccCCCCcEEEeeec--Cceeeehhhcc-ccCcCCCCccEEEeecccCCC-CCchhh
Q 045118           23 LPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNK--GKMWQLSRMIL-SEYKFPPSLTQLSLSNTELME-DPMPTL   98 (221)
Q Consensus        23 l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~--~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~-~~~~~l   98 (221)
                      +.+|..|++.+..-..    ...+-.+++|++|.++.+  ...   -. ++ ..... |+|+++++++|++.. .....+
T Consensus        42 ~~~le~ls~~n~gltt----~~~~P~Lp~LkkL~lsdn~~~~~---~~-l~vl~e~~-P~l~~l~ls~Nki~~lstl~pl  112 (260)
T KOG2739|consen   42 FVELELLSVINVGLTT----LTNFPKLPKLKKLELSDNYRRVS---GG-LEVLAEKA-PNLKVLNLSGNKIKDLSTLRPL  112 (260)
T ss_pred             ccchhhhhhhccceee----cccCCCcchhhhhcccCCccccc---cc-ceehhhhC-CceeEEeecCCccccccccchh
Confidence            4555555555543111    123345677777777763  110   00 22 22334 778888888877763 123345


Q ss_pred             ccCCCCcEEEecCCc
Q 045118           99 EKLPHLEVLKLKQNS  113 (221)
Q Consensus        99 ~~l~~L~~L~l~~~~  113 (221)
                      ..+.+|..|++..|.
T Consensus       113 ~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen  113 KELENLKSLDLFNCS  127 (260)
T ss_pred             hhhcchhhhhcccCC
Confidence            566677777775544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.70  E-value=0.00049  Score=54.55  Aligned_cols=84  Identities=24%  Similarity=0.227  Sum_probs=51.2

Q ss_pred             CCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCC-chhhccC
Q 045118           23 LPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDP-MPTLEKL  101 (221)
Q Consensus        23 l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~-~~~l~~l  101 (221)
                      +.+.++|+.+++.   ... .+...+|+-|+.|.++.|.    +.. +..+..+ ++|+.|.++.|.+.... +..+.++
T Consensus        18 l~~vkKLNcwg~~---L~D-Isic~kMp~lEVLsLSvNk----Iss-L~pl~rC-trLkElYLRkN~I~sldEL~YLknl   87 (388)
T KOG2123|consen   18 LENVKKLNCWGCG---LDD-ISICEKMPLLEVLSLSVNK----ISS-LAPLQRC-TRLKELYLRKNCIESLDELEYLKNL   87 (388)
T ss_pred             HHHhhhhcccCCC---ccH-HHHHHhcccceeEEeeccc----ccc-chhHHHH-HHHHHHHHHhcccccHHHHHHHhcC
Confidence            4567778777774   222 2334567888888887631    011 2233334 77888888877776533 4567777


Q ss_pred             CCCcEEEecCCccCC
Q 045118          102 PHLEVLKLKQNSYLE  116 (221)
Q Consensus       102 ~~L~~L~l~~~~~~~  116 (221)
                      |+|+.|.+..|...+
T Consensus        88 psLr~LWL~ENPCc~  102 (388)
T KOG2123|consen   88 PSLRTLWLDENPCCG  102 (388)
T ss_pred             chhhhHhhccCCccc
Confidence            888888887665443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.45  E-value=0.0016  Score=55.96  Aligned_cols=119  Identities=23%  Similarity=0.252  Sum_probs=62.1

Q ss_pred             CCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhh-ccccCcCCCCccEEEeeccc-CCCCCchhhc
Q 045118           22 RLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRM-ILSEYKFPPSLTQLSLSNTE-LMEDPMPTLE   99 (221)
Q Consensus        22 ~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L-lp~l~~~~~~L~~L~l~~~~-~~~~~~~~l~   99 (221)
                      .+++|+.+.+..+.......+.+.....++|+.|++++....+..... ...+...+.+|+.|++.++. ++......+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            367777777776641111124455566777777777641000000000 11122223677777777766 4444444444


Q ss_pred             c-CCCCcEEEecCCc-cCCceeeeeCCCCCCcccEEeccccccc
Q 045118          100 K-LPHLEVLKLKQNS-YLERKLACVGCSSFSQLKILHLKSMLWL  141 (221)
Q Consensus       100 ~-l~~L~~L~l~~~~-~~~~~l~~~~~~~~~~L~~L~L~~~~~l  141 (221)
                      . +++|+.|.+..+. .+...+... ...++.|++|++++|..+
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i-~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSI-AERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHH-HHhcCcccEEeeecCccc
Confidence            3 6777777764444 233334433 445667777777766644

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.45  E-value=0.00087  Score=50.60  Aligned_cols=63  Identities=24%  Similarity=0.389  Sum_probs=36.8

Q ss_pred             CCCCcccEEeccccccccceeeC--CCCCCCccEEEecCCccccCcch-hhccCCcCcEEEccCCC
Q 045118          125 SSFSQLKILHLKSMLWLEEWTMG--AGAMPKLESLILNPCAYLRKLPE-ELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       125 ~~~~~L~~L~L~~~~~l~~~~~~--~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~l~l~~~~  187 (221)
                      ..+++++.|.+.+|..+.++-..  -+-.|+|+.|++++|+.+++... .+..+++|+.+.+.+.+
T Consensus       122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence            34555666666666555544211  12356777777777776665532 35666777777776655

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.37  E-value=0.013  Score=46.54  Aligned_cols=97  Identities=15%  Similarity=0.217  Sum_probs=51.3

Q ss_pred             ChhhcCCCCCccEEEEEecCC--ccccchhHhhccCCCCcEEEeeecCce------e-eehhhccccCcCCCCccEEEee
Q 045118           16 TPDILGRLPNVRTFRISGDLS--YYHSGVSKSLCKLHKLECLKLVNKGKM------W-QLSRMILSEYKFPPSLTQLSLS   86 (221)
Q Consensus        16 ~~~~l~~l~~Lr~L~l~~~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~------~-~L~~Llp~l~~~~~~L~~L~l~   86 (221)
                      ..+.+..|..+.++++++|..  ....++...+.+-.+|+..+++.....      . +|.-|+|.+-.+ |.|+.++++
T Consensus        22 v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkc-p~l~~v~LS  100 (388)
T COG5238          22 VVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKC-PRLQKVDLS  100 (388)
T ss_pred             HHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcC-Ccceeeecc
Confidence            345566677788888887751  112334445555555655555441000      0 333334444555 677777777


Q ss_pred             cccCCCCCch----hhccCCCCcEEEecCCc
Q 045118           87 NTELMEDPMP----TLEKLPHLEVLKLKQNS  113 (221)
Q Consensus        87 ~~~~~~~~~~----~l~~l~~L~~L~l~~~~  113 (221)
                      .|.+...-++    .+++-++|++|.+.+|+
T Consensus       101 DNAfg~~~~e~L~d~is~~t~l~HL~l~NnG  131 (388)
T COG5238         101 DNAFGSEFPEELGDLISSSTDLVHLKLNNNG  131 (388)
T ss_pred             ccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence            7665432222    24455667777775554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.36  E-value=0.0019  Score=48.77  Aligned_cols=88  Identities=17%  Similarity=0.230  Sum_probs=66.8

Q ss_pred             CCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCc-eeeeeCCCCCCcccEEeccccccccceee-CCCCCCCcc
Q 045118           78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLER-KLACVGCSSFSQLKILHLKSMLWLEEWTM-GAGAMPKLE  155 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~l~~~~~~~~~~L~~L~L~~~~~l~~~~~-~~~~l~~L~  155 (221)
                      ..++.++-+++.+..++.+.+..++.++.|.+.+|...++ .+... -+..++|+.|++++|+.+++-.. .+..+++|+
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l-~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERL-GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR  179 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHh-cccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence            3678899999988888888889999999999977665433 23323 33578999999999998887632 356689999


Q ss_pred             EEEecCCcccc
Q 045118          156 SLILNPCAYLR  166 (221)
Q Consensus       156 ~L~l~~~~~l~  166 (221)
                      .|.+.+.+.+.
T Consensus       180 ~L~l~~l~~v~  190 (221)
T KOG3864|consen  180 RLHLYDLPYVA  190 (221)
T ss_pred             HHHhcCchhhh
Confidence            99888765544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=94.35  E-value=0.018  Score=48.29  Aligned_cols=110  Identities=19%  Similarity=0.235  Sum_probs=73.3

Q ss_pred             CCCccEEEeecccC-CCCCchhhc-cCCCCcEEEecCCc-cCCceeeeeCCCCCCcccEEeccccccccc--eeeCCCCC
Q 045118           77 PPSLTQLSLSNTEL-MEDPMPTLE-KLPHLEVLKLKQNS-YLERKLACVGCSSFSQLKILHLKSMLWLEE--WTMGAGAM  151 (221)
Q Consensus        77 ~~~L~~L~l~~~~~-~~~~~~~l~-~l~~L~~L~l~~~~-~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~--~~~~~~~l  151 (221)
                      +..||+|+.++|.. .+.....++ +.++|+.|.+..+. ++...+... ..+.+.|+.+++..|..+.+  +......+
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l-~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML-GRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh-hcCChhhhhhcccccceehhhhHhhhccCC
Confidence            36778888777643 223333444 57899999998776 344333333 44578899999888763332  23333458


Q ss_pred             CCccEEEecCCccccCc-----chhhccCCcCcEEEccCCC
Q 045118          152 PKLESLILNPCAYLRKL-----PEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       152 ~~L~~L~l~~~~~l~~~-----~~~~~~l~~L~~l~l~~~~  187 (221)
                      +.|+.+.+++|..+++.     ...-.+...++.+.++.+|
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p  412 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP  412 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence            99999999999877654     2223556778889999988

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.79  E-value=0.16  Score=35.26  Aligned_cols=31  Identities=19%  Similarity=0.261  Sum_probs=13.0

Q ss_pred             CCccEEEeecccCCCCCchhhccCCCCcEEEe
Q 045118           78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKL  109 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  109 (221)
                      ++|+.+.+..+ +...+...+..+++++.+.+
T Consensus        35 ~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~   65 (129)
T PF13306_consen   35 TSLKSINFPNN-LTSIGDNAFSNCKSLESITF   65 (129)
T ss_dssp             TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE
T ss_pred             ccccccccccc-ccccceeeeecccccccccc
Confidence            45555555442 33333334555555555555

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.51  E-value=0.26  Score=34.23  Aligned_cols=79  Identities=13%  Similarity=0.170  Sum_probs=28.4

Q ss_pred             cCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCCCchh
Q 045118           20 LGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMEDPMPT   97 (221)
Q Consensus        20 l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~~~~~   97 (221)
                      +.++++|+.+.+...   ....-...+.+.++|+.+.+..+     +.. ++  .+... ++++.+.+.. .+...+...
T Consensus         8 F~~~~~l~~i~~~~~---~~~I~~~~F~~~~~l~~i~~~~~-----~~~-i~~~~F~~~-~~l~~i~~~~-~~~~i~~~~   76 (129)
T PF13306_consen    8 FYNCSNLESITFPNT---IKKIGENAFSNCTSLKSINFPNN-----LTS-IGDNAFSNC-KSLESITFPN-NLKSIGDNA   76 (129)
T ss_dssp             TTT-TT--EEEETST-----EE-TTTTTT-TT-SEEEESST-----TSC-E-TTTTTT--TT-EEEEETS-TT-EE-TTT
T ss_pred             HhCCCCCCEEEECCC---eeEeChhhccccccccccccccc-----ccc-cceeeeecc-cccccccccc-ccccccccc
Confidence            445555555554432   12222233455555555555441     111 22  23333 4555555543 222222234


Q ss_pred             hccCCCCcEEEe
Q 045118           98 LEKLPHLEVLKL  109 (221)
Q Consensus        98 l~~l~~L~~L~l  109 (221)
                      +..+++++.+.+
T Consensus        77 F~~~~~l~~i~~   88 (129)
T PF13306_consen   77 FSNCTNLKNIDI   88 (129)
T ss_dssp             TTT-TTECEEEE
T ss_pred             cccccccccccc
Confidence            444555555555

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.50  E-value=0.051  Score=25.58  Aligned_cols=18  Identities=33%  Similarity=0.421  Sum_probs=9.3

Q ss_pred             ccEEEecCCccccCcchhh
Q 045118          154 LESLILNPCAYLRKLPEEL  172 (221)
Q Consensus       154 L~~L~l~~~~~l~~~~~~~  172 (221)
                      |++|++++| .++.+|..+
T Consensus         2 L~~Ldls~n-~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGN-NLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSS-EESEEGTTT
T ss_pred             ccEEECCCC-cCEeCChhh
Confidence            555555554 444555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=93.01  E-value=0.029  Score=48.20  Aligned_cols=109  Identities=28%  Similarity=0.262  Sum_probs=47.9

Q ss_pred             CCccEEEeecccCCCC-C-chhhccCCCCcEEEecCCc--cCCc--eeeeeCCCCCCcccEEeccccccccceeeC--CC
Q 045118           78 PSLTQLSLSNTELMED-P-MPTLEKLPHLEVLKLKQNS--YLER--KLACVGCSSFSQLKILHLKSMLWLEEWTMG--AG  149 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~~-~-~~~l~~l~~L~~L~l~~~~--~~~~--~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~--~~  149 (221)
                      ++|+.|.+.+|..... . ......+++|+.|+++.+.  +...  ..... ....++|+.+++..+..+.+....  ..
T Consensus       188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLL-LSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhh-hhhcCCcCccchhhhhccCchhHHHHHh
Confidence            5666666655543221 1 1233455666666664421  1100  00111 223455666666555543333111  11


Q ss_pred             CCCCccEEEecCCccccCc--chhhccCCcCcEEEccCCC
Q 045118          150 AMPKLESLILNPCAYLRKL--PEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       150 ~l~~L~~L~l~~~~~l~~~--~~~~~~l~~L~~l~l~~~~  187 (221)
                      .+++|+.|.+.+|..+++.  -.....++.|+++++.+|.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            2556666665555543322  1123445556666666554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.32  E-value=0.12  Score=22.70  Aligned_cols=10  Identities=30%  Similarity=0.305  Sum_probs=4.3

Q ss_pred             CccEEEecCC
Q 045118          153 KLESLILNPC  162 (221)
Q Consensus       153 ~L~~L~l~~~  162 (221)
                      +|+.|++++|
T Consensus         2 ~L~~L~l~~n   11 (17)
T PF13504_consen    2 NLRTLDLSNN   11 (17)
T ss_dssp             T-SEEEETSS
T ss_pred             ccCEEECCCC
Confidence            3445555543

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.88  E-value=0.58  Score=22.70  Aligned_cols=20  Identities=40%  Similarity=0.562  Sum_probs=13.5

Q ss_pred             CCccEEEeecccCCCCCchh
Q 045118           78 PSLTQLSLSNTELMEDPMPT   97 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~~   97 (221)
                      ++|+.|++++|.+...+...
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            56777777777777665443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.88  E-value=0.58  Score=22.70  Aligned_cols=20  Identities=40%  Similarity=0.562  Sum_probs=13.5

Q ss_pred             CCccEEEeecccCCCCCchh
Q 045118           78 PSLTQLSLSNTELMEDPMPT   97 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~~   97 (221)
                      ++|+.|++++|.+...+...
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            56777777777777665443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=85.90  E-value=0.081  Score=25.36  Aligned_cols=15  Identities=40%  Similarity=0.755  Sum_probs=7.9

Q ss_pred             CCccEEEeecccCCC
Q 045118           78 PSLTQLSLSNTELME   92 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~   92 (221)
                      ++|+.|++++|.+..
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            566666666666543

...

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=84.11  E-value=0.61  Score=22.74  Aligned_cols=17  Identities=29%  Similarity=0.577  Sum_probs=11.2

Q ss_pred             CCCccEEEecCCccccC
Q 045118          151 MPKLESLILNPCAYLRK  167 (221)
Q Consensus       151 l~~L~~L~l~~~~~l~~  167 (221)
                      +++|++|++++|..+++
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            35677777777766653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	221
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 38/175 (21%), Positives = 73/175 (41%), Gaps = 14/175 (8%)

Query: 17  PDILGRLPNVRTFRISG-DLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQL-----SRMI 70
           PD + +   + T  ++   L      +  S+  L++L  L +    ++ +L     S   
Sbjct: 120 PDTMQQFAGLETLTLARNPLR----ALPASIASLNRLRELSIRACPELTELPEPLASTDA 175

Query: 71  LSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQL 130
             E++   +L  L L  T +   P  ++  L +L+ LK++ +  L      +      +L
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSP-LSALGPAIH--HLPKL 231

Query: 131 KILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHW 185
           + L L+    L  +    G    L+ LIL  C+ L  LP ++  +  L KL+L  
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 30/128 (23%), Positives = 47/128 (36%), Gaps = 11/128 (8%)

Query: 10  LHPSSCTPDILGRLPNVRTFRISGDLSY-YHSGVSKSLCKLHKLECLKLVNKGKMWQLSR 68
           L    C         +++      DLS+     +S +   L +LE L   +      L +
Sbjct: 359 LSFKGCCSQSDFGTTSLKYL----DLSFNGVITMSSNFLGLEQLEHLDFQH----SNLKQ 410

Query: 69  MI-LSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSF 127
           M   S +    +L  L +S+T            L  LEVLK+  NS+ E  L  +  +  
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF-TEL 469

Query: 128 SQLKILHL 135
             L  L L
Sbjct: 470 RNLTFLDL 477

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 31/181 (17%), Positives = 62/181 (34%), Gaps = 24/181 (13%)

Query: 7   ISALHPSSCTPDILGRLPNVRTFRISG-DLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQ 65
           +  L  ++       R   + +  +    +S           KL  L+ L L +     +
Sbjct: 37  LRRLPAAN-----FTRYSQLTSLDVGFNTISKLEPE---LCQKLPMLKVLNLQHN----E 84

Query: 66  LSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCS 125
           LS++    + F  +LT+L L +  + +       K  +L  L L  N             
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL--SSTKLGTQV 142

Query: 126 SFSQLKILHLKS--MLWLEEWTMGAGAMPKLESLIL--NPCAYLRKLPEELWCIKSLCKL 181
               L+ L L +  +  L+   +   A   L+ L L  N    +++      C  ++ +L
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ---IKEFSPG--CFHAIGRL 197

Query: 182 E 182
            
Sbjct: 198 F 198

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 34  DLSY-YHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMI-LSEYKFPPSLTQLSLSNTELM 91
           DLS+     +S +   L +L+ L   +      L R+   S +     L  L +S T   
Sbjct: 382 DLSFNGAIIMSANFMGLEELQHLDFQHS----TLKRVTEFSAFLSLEKLLYLDISYTNTK 437

Query: 92  EDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHL 135
            D       L  L  LK+  NS+ +  L+ V  ++ + L  L L
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV-FANTTNLTFLDL 480

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 33/178 (18%), Positives = 67/178 (37%), Gaps = 20/178 (11%)

Query: 13  SSCTPDILGRLPNVRTFRISG-DLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL 71
           +S   + L  L  +   R+   +++        S  +L++L+ L++ +    W     + 
Sbjct: 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDY---SFKRLYRLKVLEISH----WPYLDTMT 217

Query: 72  SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFS--- 128
               +  +LT LS+++  L   P   +  L +L  L L  N      ++ +  S      
Sbjct: 218 PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-----PISTIEGSMLHELL 272

Query: 129 QLKILHLKSMLWLEEWTMGA-GAMPKLESLILNPCAYLRKLPEEL-WCIKSLCKLELH 184
           +L+ + L     L      A   +  L  L ++    L  L E +   + +L  L L 
Sbjct: 273 RLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILD 328

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 31/174 (17%), Positives = 54/174 (31%), Gaps = 17/174 (9%)

Query: 17  PDILGRLPNVRTFRISG-DLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYK 75
            D       + T  ++   L +       +L     L+ L  +       +S +      
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAET---ALSGPKALKHLFFIQT----GISSIDFIPLH 126

Query: 76  FPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQN--SYLERKLACVGCSSFSQLKIL 133
              +L  L L +  +    +P       L+VL  + N   YL ++      SS  Q   L
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED----MSSLQQATNL 182

Query: 134 HLK-SMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELW--CIKSLCKLELH 184
            L  +   +     GA      +SL       L  + + L    I+SL      
Sbjct: 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 28/129 (21%), Positives = 44/129 (34%), Gaps = 13/129 (10%)

Query: 10  LHPSSCTPDILGRLPNVRTFRISGDLSY-YHSGVSKSLCKLHKLECLKLV-NKGKMWQLS 67
           L    C         +++      DLS+     +S +   L +LE L    +      L 
Sbjct: 359 LSFKGCCSQSDFGTTSLKYL----DLSFNGVITMSSNFLGLEQLEHLDFQHS-----NLK 409

Query: 68  RMI-LSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSS 126
           +M   S +    +L  L +S+T            L  LEVLK+  NS  +        + 
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTE 468

Query: 127 FSQLKILHL 135
              L  L L
Sbjct: 469 LRNLTFLDL 477

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 7/156 (4%)

Query: 10  LHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRM 69
           L   +  PD+ GRL +    +         S + + L +      ++ ++          
Sbjct: 54  LTGKNLHPDVTGRLLS----QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 109

Query: 70  ILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQ 129
           +         L  LSL    L +  + TL K  +L  L L   S           SS S+
Sbjct: 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 169

Query: 130 LKILHLKSMLWLEEWTMG---AGAMPKLESLILNPC 162
           L  L+L       E  +    A     +  L L+  
Sbjct: 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 1/85 (1%)

Query: 76  FPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHL 135
            P S T+L L + +L   P    +KL  L  L L  N    +          + LK L L
Sbjct: 26  IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 136 KSMLWLEEWTMGAGAMPKLESLILN 160
            S   +   +     + +LE L   
Sbjct: 86  -SFNGVITMSSNFLGLEQLEHLDFQ 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	221
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.81
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.81
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.72
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.71
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.7
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.7
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.69
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.69
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.68
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.67
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.66
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.66
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.65
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.65
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.65
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.64
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.64
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.64
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.64
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.64
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.63
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.63
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.62
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.62
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.62
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.62
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.62
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.62
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.62
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.61
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.61
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.61
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.61
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.61
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.6
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.6
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.6
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.6
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.6
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.59
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.59
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.59
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.59
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.59
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.58
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.58
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.58
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.58
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.58
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.58
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.57
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.57
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.57
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.57
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.57
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.57
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.56
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.56
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.56
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.55
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.54
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.54
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.54
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.54
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.54
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.53
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.53
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.53
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.52
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.52
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.51
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.51
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.5
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.5
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.5
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.5
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.49
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.49
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.48
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.48
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.47
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.46
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.45
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.45
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.45
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.45
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.45
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.44
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.44
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.43
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.43
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.42
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.41
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.4
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.4
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.39
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.39
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.39
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.39
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.38
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.37
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.33
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.32
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.32
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.32
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.31
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.31
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.29
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.29
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.22
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.22
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.2
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.19
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.19
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.17
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.16
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.13
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.11
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.11
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.1
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.92
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.86
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.84
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.81
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.79
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.78
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.78
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.69
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.64
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.61
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.57
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.55
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.55
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.26
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.13
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.06
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.93
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.9
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.84
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.49
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.49
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.23
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.97
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.68
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.51
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.44
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.08
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.08
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.74
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	87.9
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	86.26
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	81.31

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.81  E-value=5.1e-19  Score=144.21  Aligned_cols=174  Identities=20%  Similarity=0.293  Sum_probs=122.4

Q ss_pred             CCcceeceecCCC-CChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-cc------
Q 045118            2 KNLIFISALHPSS-CTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SE------   73 (221)
Q Consensus         2 ~~L~~L~~~~~~~-~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l------   73 (221)
                      ++|+.|..-.... .+|..++++++|++|++++|.   ...+|..+.++++|++|+++++...   .. +| .+      
T Consensus       104 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~---l~~lp~~l~~l~~L~~L~L~~n~~~---~~-~p~~~~~~~~~  176 (328)
T 4fcg_A          104 SHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP---LRALPASIASLNRLRELSIRACPEL---TE-LPEPLASTDAS  176 (328)
T ss_dssp             TTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC---CCCCCGGGGGCTTCCEEEEEEETTC---CC-CCSCSEEEC-C
T ss_pred             CCCCEEECCCCCccchhHHHhccCCCCEEECCCCc---cccCcHHHhcCcCCCEEECCCCCCc---cc-cChhHhhccch
Confidence            3455554332221 255556677777777777764   2366667777777777777662100   11 33 22      


Q ss_pred             ---CcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCC
Q 045118           74 ---YKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGA  150 (221)
Q Consensus        74 ---~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~  150 (221)
                         ..+ ++|++|++++|.+...+ ..++.+++|++|++++|.+.+  ++.. +..+++|+.|++++|.....++..++.
T Consensus       177 ~~~~~l-~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~N~l~~--l~~~-l~~l~~L~~L~Ls~n~~~~~~p~~~~~  251 (328)
T 4fcg_A          177 GEHQGL-VNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLSA--LGPA-IHHLPKLEELDLRGCTALRNYPPIFGG  251 (328)
T ss_dssp             CCEEES-TTCCEEEEEEECCCCCC-GGGGGCTTCCEEEEESSCCCC--CCGG-GGGCTTCCEEECTTCTTCCBCCCCTTC
T ss_pred             hhhccC-CCCCEEECcCCCcCcch-HhhcCCCCCCEEEccCCCCCc--Cchh-hccCCCCCEEECcCCcchhhhHHHhcC
Confidence               336 88888888888887544 568888888888888888765  4445 667888888888888766777777888


Q ss_pred             CCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118          151 MPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       151 l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      +++|++|++++|.....+|..+..+++|++|++.+|+
T Consensus       252 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~  288 (328)
T 4fcg_A          252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV  288 (328)
T ss_dssp             CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred             CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence            8888888888888888888888888888888888875

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.81  E-value=6.7e-19  Score=143.48  Aligned_cols=174  Identities=22%  Similarity=0.276  Sum_probs=145.9

Q ss_pred             CCCcceeceecCCC-CChhhcCCCCCccEEEEEecCCccccchhHhhc---------cCCCCcEEEeeecCceeeehhhc
Q 045118            1 LKNLIFISALHPSS-CTPDILGRLPNVRTFRISGDLSYYHSGVSKSLC---------KLHKLECLKLVNKGKMWQLSRMI   70 (221)
Q Consensus         1 L~~L~~L~~~~~~~-~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~---------~l~~L~~L~l~~~~~~~~L~~Ll   70 (221)
                      +++|++|..-.... .+|..++++++|++|++++|.  ....+|..+.         ++++|++|+++++    .+.. +
T Consensus       126 l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~--~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n----~l~~-l  198 (328)
T 4fcg_A          126 FAGLETLTLARNPLRALPASIASLNRLRELSIRACP--ELTELPEPLASTDASGEHQGLVNLQSLRLEWT----GIRS-L  198 (328)
T ss_dssp             GTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEET--TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE----CCCC-C
T ss_pred             cCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCC--CccccChhHhhccchhhhccCCCCCEEECcCC----CcCc-c
Confidence            36777877544332 377889999999999999986  5667776655         4999999999985    2333 6


Q ss_pred             c-ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCC
Q 045118           71 L-SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAG  149 (221)
Q Consensus        71 p-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~  149 (221)
                      | .++.+ ++|++|++++|.+...+ ..++.+++|++|++++|.+.+. ++.. +..+++|+.|++++|.....++..++
T Consensus       199 p~~l~~l-~~L~~L~L~~N~l~~l~-~~l~~l~~L~~L~Ls~n~~~~~-~p~~-~~~l~~L~~L~L~~n~~~~~~p~~~~  274 (328)
T 4fcg_A          199 PASIANL-QNLKSLKIRNSPLSALG-PAIHHLPKLEELDLRGCTALRN-YPPI-FGGRAPLKRLILKDCSNLLTLPLDIH  274 (328)
T ss_dssp             CGGGGGC-TTCCEEEEESSCCCCCC-GGGGGCTTCCEEECTTCTTCCB-CCCC-TTCCCCCCEEECTTCTTCCBCCTTGG
T ss_pred             hHhhcCC-CCCCEEEccCCCCCcCc-hhhccCCCCCEEECcCCcchhh-hHHH-hcCCCCCCEEECCCCCchhhcchhhh
Confidence            6 78889 99999999999999765 4788999999999998887654 5656 78899999999999987888888888


Q ss_pred             CCCCccEEEecCCccccCcchhhccCCcCcEEEccC
Q 045118          150 AMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHW  185 (221)
Q Consensus       150 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~  185 (221)
                      .+++|++|++++|+....+|..++++++++.+++..
T Consensus       275 ~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          275 RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred             cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence            999999999999999999999999999999998864

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.72  E-value=1.1e-16  Score=127.57  Aligned_cols=164  Identities=19%  Similarity=0.166  Sum_probs=106.7

Q ss_pred             hhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecC--cee---------eehhh---------c-c-ccC
Q 045118           17 PDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKG--KMW---------QLSRM---------I-L-SEY   74 (221)
Q Consensus        17 ~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~---------~L~~L---------l-p-~l~   74 (221)
                      +..++.+++|++|+++++.  .....+..+.++++|++|+++++.  ..+         +|+.|         + | .+.
T Consensus        49 ~~~~~~~~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  126 (285)
T 1ozn_A           49 AASFRACRNLTILWLHSNV--LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR  126 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred             HHHcccCCCCCEEECCCCc--cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhh
Confidence            3456777777777777775  434445667777777777776641  110         11211         2 2 455


Q ss_pred             cCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeCCCCCCC
Q 045118           75 KFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMGAGAMPK  153 (221)
Q Consensus        75 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~  153 (221)
                      .+ ++|++|++++|.+...+...++.+++|++|++++|.+..  ++...+..+++|+.|+++++. +.++ +..++.+++
T Consensus       127 ~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~  202 (285)
T 1ozn_A          127 GL-AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS--VPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGR  202 (285)
T ss_dssp             TC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTT
T ss_pred             CC-cCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc--cCHHHhcCccccCEEECCCCc-ccccCHhHccCccc
Confidence            66 777777777777776665557777777778777776543  222114567788888888777 5555 555667888


Q ss_pred             ccEEEecCCccccCcch-hhccCCcCcEEEccCCC
Q 045118          154 LESLILNPCAYLRKLPE-ELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       154 L~~L~l~~~~~l~~~~~-~~~~l~~L~~l~l~~~~  187 (221)
                      |+.|++++| .+..++. .+..+++|+++++.+++
T Consensus       203 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          203 LMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             CCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             ccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCC
Confidence            888888874 4555553 47788888888888765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.71  E-value=1.2e-16  Score=126.66  Aligned_cols=173  Identities=24%  Similarity=0.264  Sum_probs=132.7

Q ss_pred             CCcceeceecCCCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCc
Q 045118            2 KNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSL   80 (221)
Q Consensus         2 ~~L~~L~~~~~~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L   80 (221)
                      ++|++|.........++.++.+++|++|+++++.  . ..+ +.+.++++|++|+++++    .+..+.+ .+..+ ++|
T Consensus        41 ~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~--l-~~~-~~l~~l~~L~~L~L~~n----~l~~~~~~~~~~l-~~L  111 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNK--L-HDI-SALKELTNLTYLILTGN----QLQSLPNGVFDKL-TNL  111 (272)
T ss_dssp             TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSC--C-CCC-GGGTTCTTCCEEECTTS----CCCCCCTTTTTTC-TTC
T ss_pred             cceeeeeeCCCCcccccccccCCCCcEEECCCCC--C-CCc-hhhcCCCCCCEEECCCC----ccCccChhHhcCC-cCC
Confidence            4566665433333355668899999999999986  3 333 47889999999999984    2333223 57888 999


Q ss_pred             cEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCCCCCccEEEe
Q 045118           81 TQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGAMPKLESLIL  159 (221)
Q Consensus        81 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~l  159 (221)
                      ++|++++|.+...+...++.+++|++|++++|.+..  ++...+..+++|+.|++++|. +.+++.. ++.+++|+.|++
T Consensus       112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L  188 (272)
T 3rfs_A          112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS--LPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRL  188 (272)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred             CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCc--cCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEEC
Confidence            999999999998776678999999999999998765  332214678999999999998 7777544 577999999999


Q ss_pred             cCCccccCcch-hhccCCcCcEEEccCCC
Q 045118          160 NPCAYLRKLPE-ELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       160 ~~~~~l~~~~~-~~~~l~~L~~l~l~~~~  187 (221)
                      ++|. +..++. .+..+++|+++++.+++
T Consensus       189 ~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          189 YQNQ-LKSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             CSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCc-CCccCHHHHhCCcCCCEEEccCCC
Confidence            9954 555654 47899999999998864

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.70  E-value=1.7e-16  Score=126.46  Aligned_cols=160  Identities=17%  Similarity=0.126  Sum_probs=92.7

Q ss_pred             CCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecC-c-----ee----eehhh----------c-c-ccCcCCCC
Q 045118           22 RLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKG-K-----MW----QLSRM----------I-L-SEYKFPPS   79 (221)
Q Consensus        22 ~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~-----~~----~L~~L----------l-p-~l~~~~~~   79 (221)
                      -.++|++|+++++.  .....+..+.++++|++|+++++. .     .+    +|+.|          + | .+..+ ++
T Consensus        30 ~~~~l~~L~l~~n~--i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l-~~  106 (285)
T 1ozn_A           30 IPAASQRIFLHGNR--ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL-GR  106 (285)
T ss_dssp             CCTTCSEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTC-TT
T ss_pred             CCCCceEEEeeCCc--CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCC-cC
Confidence            35789999999996  444445678999999999998741 0     01    11111          1 1 33444 55


Q ss_pred             ccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCCCCCccEEE
Q 045118           80 LTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGAMPKLESLI  158 (221)
Q Consensus        80 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~  158 (221)
                      |++|++++|.+...++..++.+++|++|++++|.+..  ++...+..+++|+.|+++++. ++.++.. +..+++|+.|+
T Consensus       107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~  183 (285)
T 1ozn_A          107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA--LPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLL  183 (285)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEE
T ss_pred             CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc--cCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEE
Confidence            5555555555554444445555666666665555443  111103445666666666665 5555432 55566677777


Q ss_pred             ecCCccccCcchhhccCCcCcEEEccCCC
Q 045118          159 LNPCAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       159 l~~~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      +++|.-....|..+..+++|++|++.++.
T Consensus       184 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  212 (285)
T 1ozn_A          184 LHQNRVAHVHPHAFRDLGRLMTLYLFANN  212 (285)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCcccccCHhHccCcccccEeeCCCCc
Confidence            76643222225556667777777776653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.70  E-value=4.1e-17  Score=131.99  Aligned_cols=177  Identities=16%  Similarity=0.175  Sum_probs=112.3

Q ss_pred             CCCcceeceec-C--CCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcC
Q 045118            1 LKNLIFISALH-P--SSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKF   76 (221)
Q Consensus         1 L~~L~~L~~~~-~--~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~   76 (221)
                      +++|++|..-+ .  .+..|..++++++|++|+++++.  ....+|..+.++++|++|+++++    .+...+| .+..+
T Consensus        75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~Ls~N----~l~~~~p~~~~~l  148 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN--VSGAIPDFLSQIKTLVTLDFSYN----ALSGTLPPSISSL  148 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC--CEEECCGGGGGCTTCCEEECCSS----EEESCCCGGGGGC
T ss_pred             CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe--eCCcCCHHHhCCCCCCEEeCCCC----ccCCcCChHHhcC
Confidence            46777777542 2  23478889999999999999997  66688889999999999999874    1121133 44444


Q ss_pred             CCCccEEEeecccCCCCCchhhccCC-CCcEEEecCC-----------------------ccCCceeeeeCCCCCCcccE
Q 045118           77 PPSLTQLSLSNTELMEDPMPTLEKLP-HLEVLKLKQN-----------------------SYLERKLACVGCSSFSQLKI  132 (221)
Q Consensus        77 ~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~-----------------------~~~~~~l~~~~~~~~~~L~~  132 (221)
                       ++|++|++++|.+....+..++.++ +|++|++++|                       .+.+. .+.. +..+++|+.
T Consensus       149 -~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~-~~~~-~~~l~~L~~  225 (313)
T 1ogq_A          149 -PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGD-ASVL-FGSDKNTQK  225 (313)
T ss_dssp             -TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEEC-CGGG-CCTTSCCSE
T ss_pred             -CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCc-CCHH-HhcCCCCCE
Confidence             5555555555554422223444444 4555555444                       43321 2223 455677777


Q ss_pred             EeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118          133 LHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       133 L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      |+++++. +......+..+++|++|++++|.-...+|..+..+++|++|++.++.
T Consensus       226 L~L~~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  279 (313)
T 1ogq_A          226 IHLAKNS-LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             EECCSSE-ECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred             EECCCCc-eeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence            7777766 44443345667788888888755444677778888888888887764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.69  E-value=4e-16  Score=123.54  Aligned_cols=172  Identities=20%  Similarity=0.244  Sum_probs=130.1

Q ss_pred             CcceeceecCCCC--ChhhcCCCCCccEEEEEecCCccccchh-HhhccCCCCcEEEeeecCceeeehhhcc--ccCcCC
Q 045118            3 NLIFISALHPSSC--TPDILGRLPNVRTFRISGDLSYYHSGVS-KSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFP   77 (221)
Q Consensus         3 ~L~~L~~~~~~~~--~~~~l~~l~~Lr~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~   77 (221)
                      ++++|........  .+..++++++|++|+++++.  . ..++ ..+.++++|++|+++++    .+.. +|  .+..+ 
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l-~~i~~~~~~~l~~L~~L~l~~n----~l~~-~~~~~~~~l-  108 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK--L-QTLPAGIFKELKNLETLWVTDN----KLQA-LPIGVFDQL-  108 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC--C-SCCCTTTTSSCTTCCEEECCSS----CCCC-CCTTTTTTC-
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc--c-CeeChhhhcCCCCCCEEECCCC----cCCc-CCHhHcccc-
Confidence            4566653332222  33468889999999998885  3 3444 44688999999999874    2233 34  56778 


Q ss_pred             CCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCCCCCccE
Q 045118           78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGAMPKLES  156 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~  156 (221)
                      ++|++|++++|.+...+...++.+++|++|++++|.+..  ++...+..+++|+.|+++++. +..++.. +..+++|++
T Consensus       109 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  185 (270)
T 2o6q_A          109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS--LPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKT  185 (270)
T ss_dssp             SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCE
T ss_pred             cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc--cCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCE
Confidence            999999999999988877778899999999999998765  332115678999999999987 7777543 677899999


Q ss_pred             EEecCCccccCcch-hhccCCcCcEEEccCCC
Q 045118          157 LILNPCAYLRKLPE-ELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       157 L~l~~~~~l~~~~~-~~~~l~~L~~l~l~~~~  187 (221)
                      |++++| .+..+|. .+..+++|+.|++.+++
T Consensus       186 L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          186 LKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             EECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence            999995 5667765 47889999999998865

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.69  E-value=1.2e-16  Score=129.33  Aligned_cols=148  Identities=18%  Similarity=0.211  Sum_probs=107.2

Q ss_pred             CcceeceecC--CC--CChhhcCCCCCccEEEEEe-cCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcC
Q 045118            3 NLIFISALHP--SS--CTPDILGRLPNVRTFRISG-DLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKF   76 (221)
Q Consensus         3 ~L~~L~~~~~--~~--~~~~~l~~l~~Lr~L~l~~-~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~   76 (221)
                      ++++|..-+.  .+  ..|..++++++|++|++++ +.  ..+.+|..++++++|++|+++++    .+...+| .+..+
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~--l~~~~p~~l~~l~~L~~L~Ls~n----~l~~~~p~~~~~l  124 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN--LVGPIPPAIAKLTQLHYLYITHT----NVSGAIPDFLSQI  124 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT--EESCCCGGGGGCTTCSEEEEEEE----CCEEECCGGGGGC
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc--ccccCChhHhcCCCCCEEECcCC----eeCCcCCHHHhCC
Confidence            4566654333  23  4678899999999999995 65  66688999999999999999984    2221256 78889


Q ss_pred             CCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCC-cccEEecccccccc-ceeeCCCCCCCc
Q 045118           77 PPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFS-QLKILHLKSMLWLE-EWTMGAGAMPKL  154 (221)
Q Consensus        77 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~-~L~~L~L~~~~~l~-~~~~~~~~l~~L  154 (221)
                       ++|++|++++|.+....+..++.+++|++|++++|.+.+. ++.. +..++ .|+.|+++++. +. .++..++.++ |
T Consensus       125 -~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~-l~~l~~~L~~L~L~~N~-l~~~~~~~~~~l~-L  199 (313)
T 1ogq_A          125 -KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA-IPDS-YGSFSKLFTSMTISRNR-LTGKIPPTFANLN-L  199 (313)
T ss_dssp             -TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE-CCGG-GGCCCTTCCEEECCSSE-EEEECCGGGGGCC-C
T ss_pred             -CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCc-CCHH-HhhhhhcCcEEECcCCe-eeccCChHHhCCc-c
Confidence             9999999999999866667899999999999999887532 4444 55666 78888888776 33 2233333333 4


Q ss_pred             cEEEecC
Q 045118          155 ESLILNP  161 (221)
Q Consensus       155 ~~L~l~~  161 (221)
                      +.|++++
T Consensus       200 ~~L~Ls~  206 (313)
T 1ogq_A          200 AFVDLSR  206 (313)
T ss_dssp             SEEECCS
T ss_pred             cEEECcC
Confidence            4444444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.68  E-value=4.6e-16  Score=124.57  Aligned_cols=156  Identities=23%  Similarity=0.236  Sum_probs=112.9

Q ss_pred             hhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCch
Q 045118           18 DILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMP   96 (221)
Q Consensus        18 ~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~   96 (221)
                      ..++.+++|++|+++++.   ...++.. ..+++|++|+++++    .+.. +| .+..+ ++|+.|++++|.+...++.
T Consensus        49 ~~~~~l~~L~~L~L~~n~---l~~~~~~-~~l~~L~~L~Ls~N----~l~~-l~~~~~~l-~~L~~L~l~~N~l~~l~~~  118 (290)
T 1p9a_G           49 ATLMPYTRLTQLNLDRAE---LTKLQVD-GTLPVLGTLDLSHN----QLQS-LPLLGQTL-PALTVLDVSFNRLTSLPLG  118 (290)
T ss_dssp             GGGTTCTTCCEEECTTSC---CCEEECC-SCCTTCCEEECCSS----CCSS-CCCCTTTC-TTCCEEECCSSCCCCCCSS
T ss_pred             HHhhcCCCCCEEECCCCc---cCcccCC-CCCCcCCEEECCCC----cCCc-CchhhccC-CCCCEEECCCCcCcccCHH
Confidence            345555555555555553   1222221 44555555555543    2233 56 56778 8999999999999988777


Q ss_pred             hhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCCCCCccEEEecCCccccCcchhhccC
Q 045118           97 TLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYLRKLPEELWCI  175 (221)
Q Consensus        97 ~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~l  175 (221)
                      .++.+++|++|++++|.+..  ++..-+..+++|+.|+++++. ++.++.. +..+++|+.|++++ +.+..+|..+...
T Consensus       119 ~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~  194 (290)
T 1p9a_G          119 ALRGLGELQELYLKGNELKT--LPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGS  194 (290)
T ss_dssp             TTTTCTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTT
T ss_pred             HHcCCCCCCEEECCCCCCCc--cChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCC-CcCCccChhhccc
Confidence            88999999999999988765  332214578899999999988 8888654 46689999999998 5678999988899


Q ss_pred             CcCcEEEccCCC
Q 045118          176 KSLCKLELHWPQ  187 (221)
Q Consensus       176 ~~L~~l~l~~~~  187 (221)
                      ++|+.+++.+++
T Consensus       195 ~~L~~l~L~~Np  206 (290)
T 1p9a_G          195 HLLPFAFLHGNP  206 (290)
T ss_dssp             CCCSEEECCSCC
T ss_pred             ccCCeEEeCCCC
Confidence            999999999865

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.67  E-value=9.8e-16  Score=127.26  Aligned_cols=56  Identities=5%  Similarity=-0.022  Sum_probs=31.9

Q ss_pred             CCcceeceecCCCC--ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeee
Q 045118            2 KNLIFISALHPSSC--TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVN   59 (221)
Q Consensus         2 ~~L~~L~~~~~~~~--~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~   59 (221)
                      ++|++|..-.....  .+..++.+++|++|+++++.  .....+..++++++|++|++++
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~  126 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA--IRYLPPHVFQNVPLLTVLVLER  126 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCS
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCC--CCcCCHHHhcCCCCCCEEECCC
Confidence            45555543222211  33456677777777777764  3334445566777777777766

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.66  E-value=4.2e-16  Score=125.35  Aligned_cols=156  Identities=21%  Similarity=0.256  Sum_probs=79.7

Q ss_pred             CcceeceecCCCC-Chh-hcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCce-----e----eehhh--
Q 045118            3 NLIFISALHPSSC-TPD-ILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKM-----W----QLSRM--   69 (221)
Q Consensus         3 ~L~~L~~~~~~~~-~~~-~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~----~L~~L--   69 (221)
                      +|++|..-..... ++. .++++++|++|+++++........+..+.++++|++|+++++.-.     +    +|+.|  
T Consensus        29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l  108 (306)
T 2z66_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF  108 (306)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEEC
T ss_pred             CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEEC
Confidence            4555553322222 333 367788888888887752222333555566777777777653100     0    12222  


Q ss_pred             -------cc---ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccc
Q 045118           70 -------IL---SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSML  139 (221)
Q Consensus        70 -------lp---~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~  139 (221)
                             ++   .+..+ ++|++|++++|.+.......++.+++|++|++++|.+.+...+.. +..+++|+.|++++|.
T Consensus       109 ~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~Ls~n~  186 (306)
T 2z66_A          109 QHSNLKQMSEFSVFLSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQ  186 (306)
T ss_dssp             TTSEEESSTTTTTTTTC-TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTSC
T ss_pred             CCCcccccccchhhhhc-cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH-HhhCcCCCEEECCCCC
Confidence                   11   34445 666666666666554444455556666666666555443223333 4455555555555554


Q ss_pred             cccce-eeCCCCCCCccEEEecC
Q 045118          140 WLEEW-TMGAGAMPKLESLILNP  161 (221)
Q Consensus       140 ~l~~~-~~~~~~l~~L~~L~l~~  161 (221)
                       +.++ +..++.+++|++|++++
T Consensus       187 -l~~~~~~~~~~l~~L~~L~L~~  208 (306)
T 2z66_A          187 -LEQLSPTAFNSLSSLQVLNMSH  208 (306)
T ss_dssp             -CCEECTTTTTTCTTCCEEECTT
T ss_pred             -cCCcCHHHhcCCCCCCEEECCC
Confidence             4433 22333444455555544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.66  E-value=1.3e-15  Score=133.31  Aligned_cols=57  Identities=5%  Similarity=-0.017  Sum_probs=32.2

Q ss_pred             CCcceeceecCCCC--ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeec
Q 045118            2 KNLIFISALHPSSC--TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNK   60 (221)
Q Consensus         2 ~~L~~L~~~~~~~~--~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~   60 (221)
                      ++|+.|...+....  .+..++.+++|++|+++++.  .....+..++++++|++|+++++
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n  133 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA--IRYLPPHVFQNVPLLTVLVLERN  133 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc--CCCCCHHHHcCCCCCCEEEeeCC
Confidence            44555543222211  33456777777777777765  43444455667777777777663

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.65  E-value=9.7e-16  Score=123.68  Aligned_cols=166  Identities=17%  Similarity=0.223  Sum_probs=81.4

Q ss_pred             CcceeceecCCCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccE
Q 045118            3 NLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQ   82 (221)
Q Consensus         3 ~L~~L~~~~~~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~   82 (221)
                      +|++|...+......+.++.+++|++|+++++.   ...++. +.++++|++|+++++.    +.. ++.+..+ ++|++
T Consensus        42 ~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~---i~~~~~-~~~l~~L~~L~L~~n~----l~~-~~~~~~l-~~L~~  111 (308)
T 1h6u_A           42 GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ---ITDLAP-LKNLTKITELELSGNP----LKN-VSAIAGL-QSIKT  111 (308)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC---CCCCGG-GTTCCSCCEEECCSCC----CSC-CGGGTTC-TTCCE
T ss_pred             CcCEEEeeCCCccCchhhhccCCCCEEEccCCc---CCCChh-HccCCCCCEEEccCCc----CCC-chhhcCC-CCCCE
Confidence            455555333322233456777888888887774   333444 7777777777777631    121 2334444 44455


Q ss_pred             EEeecccCCCCCc--------------------hhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEecccccccc
Q 045118           83 LSLSNTELMEDPM--------------------PTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLE  142 (221)
Q Consensus        83 L~l~~~~~~~~~~--------------------~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~  142 (221)
                      |++++|.+...+.                    ..++.+++|++|++++|.+..  ++ . +..+++|+.|++++|. +.
T Consensus       112 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~-~-l~~l~~L~~L~l~~n~-l~  186 (308)
T 1h6u_A          112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD--LT-P-LANLSKLTTLKADDNK-IS  186 (308)
T ss_dssp             EECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC--CG-G-GTTCTTCCEEECCSSC-CC
T ss_pred             EECCCCCCCCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCC--Ch-h-hcCCCCCCEEECCCCc-cC
Confidence            5554444443210                    124444455555554444332  11 1 2344555555555544 44


Q ss_pred             ceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCC
Q 045118          143 EWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWP  186 (221)
Q Consensus       143 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~  186 (221)
                      +++. +..+++|++|++++| .+..++ .+..+++|++|++.++
T Consensus       187 ~~~~-l~~l~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          187 DISP-LASLPNLIEVHLKNN-QISDVS-PLANTSNLFIVTLTNQ  227 (308)
T ss_dssp             CCGG-GGGCTTCCEEECTTS-CCCBCG-GGTTCTTCCEEEEEEE
T ss_pred             cChh-hcCCCCCCEEEccCC-ccCccc-cccCCCCCCEEEccCC
Confidence            3332 334555555555553 333333 2455555555555543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.65  E-value=6.1e-16  Score=123.89  Aligned_cols=166  Identities=25%  Similarity=0.300  Sum_probs=128.1

Q ss_pred             CCcceeceecCCCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCcc
Q 045118            2 KNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLT   81 (221)
Q Consensus         2 ~~L~~L~~~~~~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~   81 (221)
                      ++|+.|..........+.++.+++|+.|+++++.   ...++. +.++++|++|+++++    .+.. +|.+..+ ++|+
T Consensus        46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~---l~~~~~-l~~l~~L~~L~l~~n----~l~~-~~~l~~l-~~L~  115 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK---LTDIKP-LANLKNLGWLFLDEN----KVKD-LSSLKDL-KKLK  115 (291)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC---CCCCGG-GTTCTTCCEEECCSS----CCCC-GGGGTTC-TTCC
T ss_pred             CcccEEEccCCCcccChhHhcCCCCCEEEccCCc---cCCCcc-cccCCCCCEEECCCC----cCCC-ChhhccC-CCCC
Confidence            3455555333332344568889999999999995   334444 889999999999985    2233 5678888 9999


Q ss_pred             EEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecC
Q 045118           82 QLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNP  161 (221)
Q Consensus        82 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~  161 (221)
                      +|++++|.+...  +.++.+++|+.|++++|.+..  ++ . +..+++|+.|++++|. +.+++. +..+++|+.|++++
T Consensus       116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~--~~-~-l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~L~~  187 (291)
T 1h6t_A          116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD--IT-V-LSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSK  187 (291)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC--CG-G-GGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCS
T ss_pred             EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc--ch-h-hccCCCCCEEEccCCc-cccchh-hcCCCccCEEECCC
Confidence            999999998764  578899999999999888766  32 3 6678999999999987 777754 77799999999998


Q ss_pred             CccccCcchhhccCCcCcEEEccCCC
Q 045118          162 CAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       162 ~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      | .++.++. +..+++|+.|++.+++
T Consensus       188 N-~i~~l~~-l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          188 N-HISDLRA-LAGLKNLDVLELFSQE  211 (291)
T ss_dssp             S-CCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred             C-cCCCChh-hccCCCCCEEECcCCc
Confidence            4 5677764 8889999999998764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.65  E-value=5.8e-16  Score=117.03  Aligned_cols=152  Identities=12%  Similarity=0.155  Sum_probs=122.8

Q ss_pred             CCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhhcc
Q 045118           21 GRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEK  100 (221)
Q Consensus        21 ~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~  100 (221)
                      +++++|+.|+++++.   ...++ .+..+++|++|+++++.    +.. ++.+..+ ++|++|++++|.+....+..++.
T Consensus        41 ~~l~~L~~L~l~~n~---i~~l~-~l~~l~~L~~L~l~~n~----~~~-~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~  110 (197)
T 4ezg_A           41 AQMNSLTYITLANIN---VTDLT-GIEYAHNIKDLTINNIH----ATN-YNPISGL-SNLERLRIMGKDVTSDKIPNLSG  110 (197)
T ss_dssp             HHHHTCCEEEEESSC---CSCCT-TGGGCTTCSEEEEESCC----CSC-CGGGTTC-TTCCEEEEECTTCBGGGSCCCTT
T ss_pred             hhcCCccEEeccCCC---ccChH-HHhcCCCCCEEEccCCC----CCc-chhhhcC-CCCCEEEeECCccCcccChhhcC
Confidence            567899999999985   44556 68899999999999851    122 4578888 99999999999988655668889


Q ss_pred             CCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcE
Q 045118          101 LPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCK  180 (221)
Q Consensus       101 l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~  180 (221)
                      +++|++|++++|.+... .+.. +..+++|+.|++++|..+.+++ .+..+++|+.|++++| .+..++ .+..+++|++
T Consensus       111 l~~L~~L~Ls~n~i~~~-~~~~-l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~  185 (197)
T 4ezg_A          111 LTSLTLLDISHSAHDDS-ILTK-INTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR-GIEDFPKLNQ  185 (197)
T ss_dssp             CTTCCEEECCSSBCBGG-GHHH-HTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT-TGGGCSSCCE
T ss_pred             CCCCCEEEecCCccCcH-hHHH-HhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH-HhccCCCCCE
Confidence            99999999999987653 2334 6689999999999987577776 5677999999999984 566776 7889999999


Q ss_pred             EEccCCC
Q 045118          181 LELHWPQ  187 (221)
Q Consensus       181 l~l~~~~  187 (221)
                      |++.+++
T Consensus       186 L~l~~N~  192 (197)
T 4ezg_A          186 LYAFSQT  192 (197)
T ss_dssp             EEECBC-
T ss_pred             EEeeCcc
Confidence            9999875

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.64  E-value=1.7e-15  Score=128.34  Aligned_cols=157  Identities=16%  Similarity=0.180  Sum_probs=85.0

Q ss_pred             ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCC
Q 045118           16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMED   93 (221)
Q Consensus        16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~   93 (221)
                      .+..++++++|++|+++++.  .....+..+.++++|++|+++++    .+.. +|  .+..+ ++|++|++++|.+...
T Consensus        91 ~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~L~~n----~l~~-~~~~~~~~l-~~L~~L~L~~N~l~~~  162 (452)
T 3zyi_A           91 QADTFRHLHHLEVLQLGRNS--IRQIEVGAFNGLASLNTLELFDN----WLTV-IPSGAFEYL-SKLRELWLRNNPIESI  162 (452)
T ss_dssp             CTTTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSS----CCSB-CCTTTSSSC-TTCCEEECCSCCCCEE
T ss_pred             CHHHcCCCCCCCEEECCCCc--cCCcChhhccCcccCCEEECCCC----cCCc-cChhhhccc-CCCCEEECCCCCccee
Confidence            44567777888888887775  44444566777777777777764    1222 22  34445 5555555555555443


Q ss_pred             CchhhccC-------------------------CCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeC
Q 045118           94 PMPTLEKL-------------------------PHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMG  147 (221)
Q Consensus        94 ~~~~l~~l-------------------------~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~  147 (221)
                      +...+..+                         ++|++|++++|.+..  ++ . ...+++|+.|++++|. +.++ +..
T Consensus       163 ~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~-~-~~~l~~L~~L~Ls~N~-l~~~~~~~  237 (452)
T 3zyi_A          163 PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MP-N-LTPLVGLEELEMSGNH-FPEIRPGS  237 (452)
T ss_dssp             CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--CC-C-CTTCTTCCEEECTTSC-CSEECGGG
T ss_pred             CHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--cc-c-ccccccccEEECcCCc-CcccCccc
Confidence            33334444                         444444444444332  22 1 3345555555555555 4444 334


Q ss_pred             CCCCCCccEEEecCCccccCc-chhhccCCcCcEEEccCC
Q 045118          148 AGAMPKLESLILNPCAYLRKL-PEELWCIKSLCKLELHWP  186 (221)
Q Consensus       148 ~~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~l~l~~~  186 (221)
                      +..+++|+.|++++|. +..+ +..+..+++|++|++.++
T Consensus       238 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N  276 (452)
T 3zyi_A          238 FHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHN  276 (452)
T ss_dssp             GTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred             ccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCC
Confidence            4555666666666533 3333 334566666666666654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.64  E-value=1.7e-15  Score=118.67  Aligned_cols=159  Identities=21%  Similarity=0.247  Sum_probs=126.6

Q ss_pred             ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCC
Q 045118           16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDP   94 (221)
Q Consensus        16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~   94 (221)
                      +|..+.  ++++.|+++++.  .....+..+.++++|++|+++++    .++.+.+ .+..+ ++|++|++++|.+...+
T Consensus        29 ~p~~~~--~~l~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~   99 (251)
T 3m19_A           29 VPSGIP--ADTEKLDLQSTG--LATLSDATFRGLTKLTWLNLDYN----QLQTLSAGVFDDL-TELGTLGLANNQLASLP   99 (251)
T ss_dssp             CCSCCC--TTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECTTS----CCCCCCTTTTTTC-TTCCEEECTTSCCCCCC
T ss_pred             cCCCCC--CCCCEEEccCCC--cCccCHhHhcCcccCCEEECCCC----cCCccCHhHhccC-CcCCEEECCCCcccccC
Confidence            444443  689999999996  55555667899999999999984    2333233 57888 99999999999999887


Q ss_pred             chhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceee-CCCCCCCccEEEecCCccccCcch-hh
Q 045118           95 MPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTM-GAGAMPKLESLILNPCAYLRKLPE-EL  172 (221)
Q Consensus        95 ~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~-~~  172 (221)
                      ...++.+++|++|++++|.+..  ++...+..+++|+.|+++++. ++.++. .++.+++|++|++++| .+..++. .+
T Consensus       100 ~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~  175 (251)
T 3m19_A          100 LGVFDHLTQLDKLYLGGNQLKS--LPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAF  175 (251)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTT
T ss_pred             hhHhcccCCCCEEEcCCCcCCC--cChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCC-cCCccCHHHH
Confidence            7788999999999999998765  332214678999999999997 887865 4778999999999994 5666654 67


Q ss_pred             ccCCcCcEEEccCCC
Q 045118          173 WCIKSLCKLELHWPQ  187 (221)
Q Consensus       173 ~~l~~L~~l~l~~~~  187 (221)
                      ..+++|+++++.+++
T Consensus       176 ~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          176 DRLGKLQTITLFGNQ  190 (251)
T ss_dssp             TTCTTCCEEECCSCC
T ss_pred             hCCCCCCEEEeeCCc
Confidence            889999999999865

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.64  E-value=1.2e-15  Score=122.59  Aligned_cols=157  Identities=17%  Similarity=0.235  Sum_probs=117.1

Q ss_pred             CCCccEEEEEecCCccccchhH-hhccCCCCcEEEeeecCce------e------eehhh---------cc-ccCcCCCC
Q 045118           23 LPNVRTFRISGDLSYYHSGVSK-SLCKLHKLECLKLVNKGKM------W------QLSRM---------IL-SEYKFPPS   79 (221)
Q Consensus        23 l~~Lr~L~l~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~------~------~L~~L---------lp-~l~~~~~~   79 (221)
                      .++|++|+++++.   ...++. .+.++++|++|+++++.-.      .      +|+.|         +| .+..+ ++
T Consensus        27 ~~~l~~L~L~~n~---l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l-~~  102 (306)
T 2z66_A           27 PSSATRLELESNK---LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL-EQ  102 (306)
T ss_dssp             CTTCCEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETC-TT
T ss_pred             CCCCCEEECCCCc---cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCC-CC
Confidence            3689999999995   345554 4789999999999874211      0      33333         44 56677 88


Q ss_pred             ccEEEeecccCCCCCc-hhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccc--eeeCCCCCCCccE
Q 045118           80 LTQLSLSNTELMEDPM-PTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEE--WTMGAGAMPKLES  156 (221)
Q Consensus        80 L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~--~~~~~~~l~~L~~  156 (221)
                      |++|++++|.+...+. ..+..+++|++|++++|.+... .+.. +..+++|+.|+++++. +.+  .+..++.+++|+.
T Consensus       103 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~  179 (306)
T 2z66_A          103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGI-FNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTF  179 (306)
T ss_dssp             CCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC-STTT-TTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCE
T ss_pred             CCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc-chhh-cccCcCCCEEECCCCc-cccccchhHHhhCcCCCE
Confidence            9999999988876553 4678889999999988876432 2333 5678899999999887 554  5677888999999


Q ss_pred             EEecCCccccCc-chhhccCCcCcEEEccCCC
Q 045118          157 LILNPCAYLRKL-PEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       157 L~l~~~~~l~~~-~~~~~~l~~L~~l~l~~~~  187 (221)
                      |++++|. +..+ |..+..+++|++|++.++.
T Consensus       180 L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~  210 (306)
T 2z66_A          180 LDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNN  210 (306)
T ss_dssp             EECTTSC-CCEECTTTTTTCTTCCEEECTTSC
T ss_pred             EECCCCC-cCCcCHHHhcCCCCCCEEECCCCc
Confidence            9999854 4554 5678888999999998765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.64  E-value=2.2e-15  Score=127.18  Aligned_cols=158  Identities=18%  Similarity=0.212  Sum_probs=86.3

Q ss_pred             ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCC
Q 045118           16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMED   93 (221)
Q Consensus        16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~   93 (221)
                      .+..++++++|++|+++++.  .....+..+.++++|++|+++++    ++.. +|  .+..+ ++|+.|++++|.+...
T Consensus        80 ~~~~~~~l~~L~~L~Ls~n~--i~~i~~~~~~~l~~L~~L~L~~n----~l~~-~~~~~~~~l-~~L~~L~L~~N~i~~~  151 (440)
T 3zyj_A           80 KVNSFKHLRHLEILQLSRNH--IRTIEIGAFNGLANLNTLELFDN----RLTT-IPNGAFVYL-SKLKELWLRNNPIESI  151 (440)
T ss_dssp             CTTTTSSCSSCCEEECCSSC--CCEECGGGGTTCSSCCEEECCSS----CCSS-CCTTTSCSC-SSCCEEECCSCCCCEE
T ss_pred             CHHHhhCCCCCCEEECCCCc--CCccChhhccCCccCCEEECCCC----cCCe-eCHhHhhcc-ccCceeeCCCCccccc
Confidence            34557777777777777775  44444466777777777777763    1122 22  34444 4555555555544433


Q ss_pred             Cch-------------------------hhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeC
Q 045118           94 PMP-------------------------TLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMG  147 (221)
Q Consensus        94 ~~~-------------------------~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~  147 (221)
                      +..                         .++.+++|++|++++|.+..  ++ . +..+++|+.|++++|. +..+ +..
T Consensus       152 ~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~-~-~~~l~~L~~L~Ls~N~-l~~~~~~~  226 (440)
T 3zyj_A          152 PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IP-N-LTPLIKLDELDLSGNH-LSAIRPGS  226 (440)
T ss_dssp             CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--CC-C-CTTCSSCCEEECTTSC-CCEECTTT
T ss_pred             CHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--cc-c-cCCCcccCEEECCCCc-cCccChhh
Confidence            333                         34445555555555544432  22 2 3445566666666554 4444 334


Q ss_pred             CCCCCCccEEEecCCccccCc-chhhccCCcCcEEEccCCC
Q 045118          148 AGAMPKLESLILNPCAYLRKL-PEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       148 ~~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~l~l~~~~  187 (221)
                      +..+++|++|++++| .+..+ +..+..+++|++|++.++.
T Consensus       227 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~  266 (440)
T 3zyj_A          227 FQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNN  266 (440)
T ss_dssp             TTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTSC
T ss_pred             hccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCCC
Confidence            555666666666663 33333 3345667777777776653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.64  E-value=1.1e-15  Score=137.57  Aligned_cols=96  Identities=23%  Similarity=0.278  Sum_probs=49.4

Q ss_pred             ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCce------e----eehhh----------cc-ccC
Q 045118           16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKM------W----QLSRM----------IL-SEY   74 (221)
Q Consensus        16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~------~----~L~~L----------lp-~l~   74 (221)
                      .|..++++++|+.|++++|.  ..+.+|..+..+++|++|+++++.-.      +    +|+.+          +| +++
T Consensus       434 ~p~~l~~l~~L~~L~L~~n~--l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~  511 (768)
T 3rgz_A          434 IPSSLGSLSKLRDLKLWLNM--LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG  511 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSC--CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred             ccHHHhcCCCCCEEECCCCc--ccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh
Confidence            44445555555555555554  33344444445555555555442000      0    11111          44 566


Q ss_pred             cCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCcc
Q 045118           75 KFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSY  114 (221)
Q Consensus        75 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  114 (221)
                      .+ ++|+.|++++|.+....+..++.+++|++|++++|.+
T Consensus       512 ~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  550 (768)
T 3rgz_A          512 RL-ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF  550 (768)
T ss_dssp             GC-TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             cC-CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence            66 6666666666666544445566666666666666544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.63  E-value=1.7e-15  Score=120.04  Aligned_cols=178  Identities=17%  Similarity=0.169  Sum_probs=97.4

Q ss_pred             CcceeceecCCCC--ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCc-e-----e----eehhh-
Q 045118            3 NLIFISALHPSSC--TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGK-M-----W----QLSRM-   69 (221)
Q Consensus         3 ~L~~L~~~~~~~~--~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~-----~----~L~~L-   69 (221)
                      +|++|..-.....  .+..++++++|++|+++++.  .....+..+.++++|++|+++++.- .     +    +|+.+ 
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC--CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCc--CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            3555553222222  33467778888888888775  3344445677778888888876310 0     0    11111 


Q ss_pred             --------cc--ccCcCCCCccEEEeecccCCCCC-chhhccCCCCcEEEecCCccCCceeeeeCCCCCCccc----EEe
Q 045118           70 --------IL--SEYKFPPSLTQLSLSNTELMEDP-MPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLK----ILH  134 (221)
Q Consensus        70 --------lp--~l~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~----~L~  134 (221)
                              ++  .++.+ ++|++|++++|.+.... +..++.+++|++|++++|.+..  ++...+..+++|+    .|+
T Consensus       107 l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~l~l~L~  183 (276)
T 2z62_A          107 AVETNLASLENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS--IYCTDLRVLHQMPLLNLSLD  183 (276)
T ss_dssp             CTTSCCCCSTTCCCTTC-TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE--ECGGGGHHHHTCTTCCEEEE
T ss_pred             CCCCCccccCchhcccC-CCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc--CCHHHhhhhhhccccceeee
Confidence                    11  24444 55555555555554422 2345555555555555554432  1110011222233    455


Q ss_pred             ccccccccceeeCCCCCCCccEEEecCCccccCcchh-hccCCcCcEEEccCCC
Q 045118          135 LKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEE-LWCIKSLCKLELHWPQ  187 (221)
Q Consensus       135 L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~l~l~~~~  187 (221)
                      ++++. +..++.......+|+.|++++| .++.+|.. +..+++|+++++.+++
T Consensus       184 ls~n~-l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          184 LSLNP-MNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             CCSSC-CCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             cCCCc-ccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence            55554 4555444444558999999985 47777654 5889999999999654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.63  E-value=3.4e-15  Score=126.47  Aligned_cols=177  Identities=22%  Similarity=0.197  Sum_probs=127.8

Q ss_pred             CCcceeceecCCCC--ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecC-ce-----e----eehhh
Q 045118            2 KNLIFISALHPSSC--TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKG-KM-----W----QLSRM   69 (221)
Q Consensus         2 ~~L~~L~~~~~~~~--~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~-----~----~L~~L   69 (221)
                      ++|+.|..-.....  .+..++++++|++|++++|.  .....+..+.++++|++|+++++. +.     +    +|+.|
T Consensus        99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  176 (452)
T 3zyi_A           99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW--LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL  176 (452)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCccCCcChhhccCcccCCEEECCCCc--CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEE
Confidence            45556553322222  44667888888888888885  333334457778888888887631 00     1    22222


Q ss_pred             ----------cc--ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccc
Q 045118           70 ----------IL--SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKS  137 (221)
Q Consensus        70 ----------lp--~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~  137 (221)
                                ++  .+..+ ++|+.|++++|.+...+  .+..+++|+.|++++|.+... .+.. +..+++|+.|++++
T Consensus       177 ~l~~~~~l~~i~~~~~~~l-~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~-~~~l~~L~~L~L~~  251 (452)
T 3zyi_A          177 DLGELKKLEYISEGAFEGL-FNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEI-RPGS-FHGLSSLKKLWVMN  251 (452)
T ss_dssp             ECCCCTTCCEECTTTTTTC-TTCCEEECTTSCCSSCC--CCTTCTTCCEEECTTSCCSEE-CGGG-GTTCTTCCEEECTT
T ss_pred             eCCCCCCccccChhhccCC-CCCCEEECCCCcccccc--cccccccccEEECcCCcCccc-Cccc-ccCccCCCEEEeCC
Confidence                      33  46677 89999999999988653  678899999999999987652 2434 77899999999999


Q ss_pred             cccccce-eeCCCCCCCccEEEecCCccccCcch-hhccCCcCcEEEccCCC
Q 045118          138 MLWLEEW-TMGAGAMPKLESLILNPCAYLRKLPE-ELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       138 ~~~l~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~l~l~~~~  187 (221)
                      +. +..+ +..+..+++|+.|++++| .+..+|. .+..+++|++|++.+++
T Consensus       252 n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          252 SQ-VSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             SC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             Cc-CceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence            88 7766 445778999999999995 6677765 46789999999999876

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.62  E-value=4.1e-15  Score=125.51  Aligned_cols=177  Identities=20%  Similarity=0.196  Sum_probs=127.4

Q ss_pred             CCcceeceecCCCC--ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecC-c-----ee----eehhh
Q 045118            2 KNLIFISALHPSSC--TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKG-K-----MW----QLSRM   69 (221)
Q Consensus         2 ~~L~~L~~~~~~~~--~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~-----~~----~L~~L   69 (221)
                      ++|+.|..-.....  .+..++++++|++|++++|.  .....+..+.++++|++|+++++. +     .+    +|+.|
T Consensus        88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L  165 (440)
T 3zyj_A           88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR--LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL  165 (440)
T ss_dssp             SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC--CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCcCCccChhhccCCccCCEEECCCCc--CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEe
Confidence            45555553322222  44668888888888888885  333333467778888888887641 0     01    22222


Q ss_pred             ----------cc--ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccc
Q 045118           70 ----------IL--SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKS  137 (221)
Q Consensus        70 ----------lp--~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~  137 (221)
                                ++  .+..+ ++|+.|++++|.+...+  .+..+++|+.|++++|.+... .+.. +..+++|+.|++.+
T Consensus       166 ~l~~~~~l~~i~~~~~~~l-~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~-~~~l~~L~~L~L~~  240 (440)
T 3zyj_A          166 DLGELKRLSYISEGAFEGL-SNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAI-RPGS-FQGLMHLQKLWMIQ  240 (440)
T ss_dssp             ECCCCTTCCEECTTTTTTC-SSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCEE-CTTT-TTTCTTCCEEECTT
T ss_pred             CCCCCCCcceeCcchhhcc-cccCeecCCCCcCcccc--ccCCCcccCEEECCCCccCcc-Chhh-hccCccCCEEECCC
Confidence                      23  46777 89999999999998654  678899999999999987652 2334 67899999999999


Q ss_pred             cccccce-eeCCCCCCCccEEEecCCccccCcch-hhccCCcCcEEEccCCC
Q 045118          138 MLWLEEW-TMGAGAMPKLESLILNPCAYLRKLPE-ELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       138 ~~~l~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~l~l~~~~  187 (221)
                      +. +..+ +..+..+++|+.|++++| .++.+|. .+..+++|++|++.+++
T Consensus       241 n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          241 SQ-IQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             CC-CCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             Cc-eeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence            88 7777 345677999999999994 6667764 46889999999999876

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.62  E-value=3.1e-15  Score=124.27  Aligned_cols=101  Identities=21%  Similarity=0.179  Sum_probs=54.5

Q ss_pred             CccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEE
Q 045118           79 SLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLI  158 (221)
Q Consensus        79 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~  158 (221)
                      +|+.|++++|.+...  ..++.+++|++|++++|.+... .+.. +..+++|+.|+++++. ++.++...+.+++|+.|+
T Consensus       227 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~-~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~  301 (390)
T 3o6n_A          227 ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKI-MYHP-FVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLD  301 (390)
T ss_dssp             SCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEE-ESGG-GTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEE
T ss_pred             cccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCc-ChhH-ccccccCCEEECCCCc-CcccCcccCCCCCCCEEE
Confidence            444555555544432  3455666777777766655432 2223 4556666666666665 555655555566666666


Q ss_pred             ecCCccccCcchhhccCCcCcEEEccC
Q 045118          159 LNPCAYLRKLPEELWCIKSLCKLELHW  185 (221)
Q Consensus       159 l~~~~~l~~~~~~~~~l~~L~~l~l~~  185 (221)
                      +++| .+..+|..+..+++|++|++.+
T Consensus       302 L~~n-~l~~~~~~~~~l~~L~~L~L~~  327 (390)
T 3o6n_A          302 LSHN-HLLHVERNQPQFDRLENLYLDH  327 (390)
T ss_dssp             CCSS-CCCCCGGGHHHHTTCSEEECCS
T ss_pred             CCCC-cceecCccccccCcCCEEECCC
Confidence            6663 3445554444444444444443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.62  E-value=7.9e-15  Score=113.90  Aligned_cols=172  Identities=19%  Similarity=0.210  Sum_probs=125.5

Q ss_pred             CcceeceecCCCC--ChhhcCCCCCccEEEEEecCCccccchh-HhhccCCCCcEEEeee-cCceeeehhhcc--ccCcC
Q 045118            3 NLIFISALHPSSC--TPDILGRLPNVRTFRISGDLSYYHSGVS-KSLCKLHKLECLKLVN-KGKMWQLSRMIL--SEYKF   76 (221)
Q Consensus         3 ~L~~L~~~~~~~~--~~~~l~~l~~Lr~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~-~~~~~~L~~Llp--~l~~~   76 (221)
                      +|++|........  .+..++++++|++|+++++.  ....++ ..+.++++|++|++++ +    .++. +|  .+..+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~--~l~~i~~~~f~~l~~L~~L~l~~~n----~l~~-i~~~~f~~l  104 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV--TLQQLESHSFYNLSKVTHIEIRNTR----NLTY-IDPDALKEL  104 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCS--SCCEECTTTEESCTTCCEEEEEEET----TCCE-ECTTSEECC
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCC--CcceeCHhHcCCCcCCcEEECCCCC----CeeE-cCHHHhCCC
Confidence            5666664443333  34468899999999999983  244444 4788999999999986 4    2333 34  67778


Q ss_pred             CCCccEEEeecccCCCCCchhhccCCCCc---EEEecCC-ccCCceeeeeCCCCCCccc-EEeccccccccceeeCCCCC
Q 045118           77 PPSLTQLSLSNTELMEDPMPTLEKLPHLE---VLKLKQN-SYLERKLACVGCSSFSQLK-ILHLKSMLWLEEWTMGAGAM  151 (221)
Q Consensus        77 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~---~L~l~~~-~~~~~~l~~~~~~~~~~L~-~L~L~~~~~l~~~~~~~~~l  151 (221)
                       ++|++|++++|.+...+  .++.+++|+   +|++++| .+..  ++...+..+++|+ .|+++++. ++.++......
T Consensus       105 -~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~~L~l~~N~~l~~--i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~  178 (239)
T 2xwt_C          105 -PLLKFLGIFNTGLKMFP--DLTKVYSTDIFFILEITDNPYMTS--IPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNG  178 (239)
T ss_dssp             -TTCCEEEEEEECCCSCC--CCTTCCBCCSEEEEEEESCTTCCE--ECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTT
T ss_pred             -CCCCEEeCCCCCCcccc--ccccccccccccEEECCCCcchhh--cCcccccchhcceeEEEcCCCC-CcccCHhhcCC
Confidence             89999999999988754  377788887   9999888 6543  3321155688899 99998887 77776554444


Q ss_pred             CCccEEEecCCccccCcch-hhccC-CcCcEEEccCCC
Q 045118          152 PKLESLILNPCAYLRKLPE-ELWCI-KSLCKLELHWPQ  187 (221)
Q Consensus       152 ~~L~~L~l~~~~~l~~~~~-~~~~l-~~L~~l~l~~~~  187 (221)
                      ++|++|++++|..++.+|. .+..+ ++|+++++.++.
T Consensus       179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~  216 (239)
T 2xwt_C          179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS  216 (239)
T ss_dssp             CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred             CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc
Confidence            7899999998655777754 47778 899999998764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.62  E-value=1.1e-15  Score=123.43  Aligned_cols=173  Identities=21%  Similarity=0.276  Sum_probs=90.9

Q ss_pred             CCCcceeceecCC--CCChhhc--CCCCCccEEEEEecCCccccchhHhhccC-----CCCcEEEeeecCceeeehhhcc
Q 045118            1 LKNLIFISALHPS--SCTPDIL--GRLPNVRTFRISGDLSYYHSGVSKSLCKL-----HKLECLKLVNKGKMWQLSRMIL   71 (221)
Q Consensus         1 L~~L~~L~~~~~~--~~~~~~l--~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~L~~Llp   71 (221)
                      +++|++|..-...  +..|..+  +.+++|++|+++++.  .... |..++.+     ++|++|+++++    ++..+.|
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~-~~~~~~l~~~~~~~L~~L~L~~N----~l~~~~~  166 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS--WATR-DAWLAELQQWLKPGLKVLSIAQA----HSLNFSC  166 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB--CSSS-SSHHHHHHTTCCTTCCEEEEESC----SCCCCCT
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC--Ccch-hHHHHHHHHhhcCCCcEEEeeCC----CCccchH
Confidence            3567777644332  3355555  888999999999885  3333 6666666     88888888874    1222122


Q ss_pred             -ccCcCCCCccEEEeecccCCCC--Cchhh--ccCCCCcEEEecCCccCCc-eee-eeCCCCCCcccEEeccccccccce
Q 045118           72 -SEYKFPPSLTQLSLSNTELMED--PMPTL--EKLPHLEVLKLKQNSYLER-KLA-CVGCSSFSQLKILHLKSMLWLEEW  144 (221)
Q Consensus        72 -~l~~~~~~L~~L~l~~~~~~~~--~~~~l--~~l~~L~~L~l~~~~~~~~-~l~-~~~~~~~~~L~~L~L~~~~~l~~~  144 (221)
                       .++.+ ++|++|++++|.+...  .+..+  +.+++|++|++++|.+... .++ .. ...+++|+.|++++|. +.+.
T Consensus       167 ~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~  243 (312)
T 1wwl_A          167 EQVRVF-PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL-AAARVQLQGLDLSHNS-LRDA  243 (312)
T ss_dssp             TTCCCC-SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH-HHTTCCCSEEECTTSC-CCSS
T ss_pred             HHhccC-CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH-HhcCCCCCEEECCCCc-CCcc
Confidence             45555 5666666666654321  01122  4555666666655554421 011 01 1234555555555555 3332


Q ss_pred             e--eCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCC
Q 045118          145 T--MGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWP  186 (221)
Q Consensus       145 ~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~  186 (221)
                      +  .....+++|++|++++ +.++.+|..+.  ++|++|++.++
T Consensus       244 ~~~~~~~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~N  284 (312)
T 1wwl_A          244 AGAPSCDWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSYN  284 (312)
T ss_dssp             CCCSCCCCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCSS
T ss_pred             cchhhhhhcCCCCEEECCC-CccChhhhhcc--CCceEEECCCC
Confidence            2  1222345555555555 23445554443  55555555554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.62  E-value=2e-15  Score=135.80  Aligned_cols=156  Identities=21%  Similarity=0.183  Sum_probs=121.2

Q ss_pred             CCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhhccC
Q 045118           23 LPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKL  101 (221)
Q Consensus        23 l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l  101 (221)
                      +++|++|++++|.  ..+.+|..++++++|++|+++++    ++...+| .++.+ ++|+.|++++|.+....+..++.+
T Consensus       393 ~~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~Ls~N----~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l  465 (768)
T 3rgz_A          393 KNTLQELYLQNNG--FTGKIPPTLSNCSELVSLHLSFN----YLSGTIPSSLGSL-SKLRDLKLWLNMLEGEIPQELMYV  465 (768)
T ss_dssp             TCCCCEEECCSSE--EEEECCGGGGGCTTCCEEECCSS----EEESCCCGGGGGC-TTCCEEECCSSCCCSCCCGGGGGC
T ss_pred             cCCccEEECCCCc--cccccCHHHhcCCCCCEEECcCC----cccCcccHHHhcC-CCCCEEECCCCcccCcCCHHHcCC
Confidence            5566666666665  44566777778888888888764    2222255 77888 899999999999887666788889


Q ss_pred             CCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcEE
Q 045118          102 PHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKL  181 (221)
Q Consensus       102 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l  181 (221)
                      ++|++|++++|.+.+. .+.. +..+++|+.|++++|.-...+|..++.+++|+.|++++|.....+|..++.+++|+++
T Consensus       466 ~~L~~L~L~~N~l~~~-~p~~-l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  543 (768)
T 3rgz_A          466 KTLETLILDFNDLTGE-IPSG-LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL  543 (768)
T ss_dssp             TTCCEEECCSSCCCSC-CCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEE
T ss_pred             CCceEEEecCCcccCc-CCHH-HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEE
Confidence            9999999988887654 5555 6778999999999988333667778889999999999976656788889999999999


Q ss_pred             EccCCC
Q 045118          182 ELHWPQ  187 (221)
Q Consensus       182 ~l~~~~  187 (221)
                      ++.+++
T Consensus       544 ~Ls~N~  549 (768)
T 3rgz_A          544 DLNTNL  549 (768)
T ss_dssp             ECCSSE
T ss_pred             ECCCCc
Confidence            998764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.62  E-value=4.7e-15  Score=119.66  Aligned_cols=137  Identities=21%  Similarity=0.294  Sum_probs=94.8

Q ss_pred             cCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCc-e---e----eehhh---------ccccCcCCCCccE
Q 045118           20 LGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGK-M---W----QLSRM---------ILSEYKFPPSLTQ   82 (221)
Q Consensus        20 l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~---~----~L~~L---------lp~l~~~~~~L~~   82 (221)
                      ++.+++|++|+++++.   ...++ .+.++++|++|+++++.- .   +    +|+.|         ++.+..+ ++|+.
T Consensus        81 ~~~l~~L~~L~L~~n~---l~~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l-~~L~~  155 (308)
T 1h6u_A           81 LKNLTKITELELSGNP---LKNVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGL-TNLQY  155 (308)
T ss_dssp             GTTCCSCCEEECCSCC---CSCCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGC-TTCCE
T ss_pred             HccCCCCCEEEccCCc---CCCch-hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCccccCC-CCccE
Confidence            6666666666666664   22222 455556666666654210 0   0    12221         4456778 89999


Q ss_pred             EEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCC
Q 045118           83 LSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPC  162 (221)
Q Consensus        83 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~  162 (221)
                      |++++|.+...+  .++.+++|+.|++++|.+..  ++ . ...+++|+.|++++|. +.+++ .+..+++|+.|++++|
T Consensus       156 L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~--~~-~-l~~l~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          156 LSIGNAQVSDLT--PLANLSKLTTLKADDNKISD--IS-P-LASLPNLIEVHLKNNQ-ISDVS-PLANTSNLFIVTLTNQ  227 (308)
T ss_dssp             EECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC--CG-G-GGGCTTCCEEECTTSC-CCBCG-GGTTCTTCCEEEEEEE
T ss_pred             EEccCCcCCCCh--hhcCCCCCCEEECCCCccCc--Ch-h-hcCCCCCCEEEccCCc-cCccc-cccCCCCCCEEEccCC
Confidence            999999988654  38899999999999998765  33 2 5578999999999998 77776 4678999999999985


Q ss_pred             ccccCcch
Q 045118          163 AYLRKLPE  170 (221)
Q Consensus       163 ~~l~~~~~  170 (221)
                      . +...|.
T Consensus       228 ~-i~~~~~  234 (308)
T 1h6u_A          228 T-ITNQPV  234 (308)
T ss_dssp             E-EECCCE
T ss_pred             e-eecCCe
Confidence            4 555544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.62  E-value=6.2e-15  Score=125.46  Aligned_cols=178  Identities=21%  Similarity=0.242  Sum_probs=100.8

Q ss_pred             CCcceeceecCCCC--ChhhcCCCCCccEEEEEecCCccccchh-HhhccCCCCcEEEeeecCc------ee----eehh
Q 045118            2 KNLIFISALHPSSC--TPDILGRLPNVRTFRISGDLSYYHSGVS-KSLCKLHKLECLKLVNKGK------MW----QLSR   68 (221)
Q Consensus         2 ~~L~~L~~~~~~~~--~~~~l~~l~~Lr~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~------~~----~L~~   68 (221)
                      ++|++|..-.....  .+..++++++|++|+++++.  . ..++ ..+.++++|++|+++++.-      .+    +|+.
T Consensus        56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l-~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  132 (477)
T 2id5_A           56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR--L-KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS  132 (477)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--C-CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc--C-CccCcccccCCCCCCEEECCCCccccCChhHccccccCCE
Confidence            45666653322212  45667888888888888774  3 3333 3467777777777765310      01    2222


Q ss_pred             h----------cc-ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccc
Q 045118           69 M----------IL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKS  137 (221)
Q Consensus        69 L----------lp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~  137 (221)
                      |          .+ .+..+ ++|+.|++++|.+...+...++.+++|+.|++++|.+... .+.. +..+++|+.|++++
T Consensus       133 L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~-~~~~-~~~l~~L~~L~l~~  209 (477)
T 2id5_A          133 LEVGDNDLVYISHRAFSGL-NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI-RDYS-FKRLYRLKVLEISH  209 (477)
T ss_dssp             EEECCTTCCEECTTSSTTC-TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE-CTTC-SCSCTTCCEEEEEC
T ss_pred             EECCCCccceeChhhccCC-CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe-Chhh-cccCcccceeeCCC
Confidence            2          12 55666 7788888888877766666677788888888877765431 1112 45567777777776


Q ss_pred             cccccceeeCCCCCCCccEEEecCCccccCcch-hhccCCcCcEEEccCC
Q 045118          138 MLWLEEWTMGAGAMPKLESLILNPCAYLRKLPE-ELWCIKSLCKLELHWP  186 (221)
Q Consensus       138 ~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~l~l~~~  186 (221)
                      +..+..++.......+|+.|++++| .++.+|. .+..+++|++|++.++
T Consensus       210 ~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n  258 (477)
T 2id5_A          210 WPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYN  258 (477)
T ss_dssp             CTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSS
T ss_pred             CccccccCcccccCccccEEECcCC-cccccCHHHhcCccccCeeECCCC
Confidence            6545544443333345555555552 3334432 3444555555555443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.61  E-value=1.2e-15  Score=123.50  Aligned_cols=174  Identities=18%  Similarity=0.132  Sum_probs=110.6

Q ss_pred             CcceeceecCCC--CChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecC-cee----ee---------
Q 045118            3 NLIFISALHPSS--CTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKG-KMW----QL---------   66 (221)
Q Consensus         3 ~L~~L~~~~~~~--~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~----~L---------   66 (221)
                      +|++|..-....  ..+..++++++|++|+++++.  ..... + +..+++|++|+++++. ..+    +|         
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~-~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~  110 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV--LYETL-D-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN  110 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC--CEEEE-E-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSC
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc--CCcch-h-hhhcCCCCEEECcCCccccccCCCCcCEEECCCCc
Confidence            556665333222  245678889999999998885  33322 2 7788888888887631 000    11         


Q ss_pred             ------------hhh---------c-c-ccCcCCCCccEEEeecccCCCCCchhh-ccCCCCcEEEecCCccCCceeeee
Q 045118           67 ------------SRM---------I-L-SEYKFPPSLTQLSLSNTELMEDPMPTL-EKLPHLEVLKLKQNSYLERKLACV  122 (221)
Q Consensus        67 ------------~~L---------l-p-~l~~~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~l~~~  122 (221)
                                  +.+         + + .+..+ ++|++|++++|.+...++..+ +.+++|++|++++|.+..  ++. 
T Consensus       111 l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~-  186 (317)
T 3o53_A          111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--VKG-  186 (317)
T ss_dssp             CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE--EEC-
T ss_pred             cCCcCccccCCCCEEECCCCCCCCccchhhhcc-CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc--ccc-
Confidence                        111         1 2 34445 666666666666665443443 356677777776666543  221 


Q ss_pred             CCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118          123 GCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       123 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                       ...+++|+.|++++|. ++.++..+..+++|+.|++++| .++.+|..+..+++|+++++.+++
T Consensus       187 -~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          187 -QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             -CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred             -ccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCC
Confidence             3347778888887777 7777666777788888888874 566777777888888888888776

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.61  E-value=1.4e-14  Score=123.23  Aligned_cols=106  Identities=21%  Similarity=0.176  Sum_probs=84.4

Q ss_pred             CCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeCCCCCCCccE
Q 045118           78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMGAGAMPKLES  156 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~L~~  156 (221)
                      .+|+.|++++|.+...+...++.+++|+.|++++|.+... .+.. +..+++|+.|+++++. +..+ +..+..+++|+.
T Consensus       224 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  300 (477)
T 2id5_A          224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI-EGSM-LHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRV  300 (477)
T ss_dssp             CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEE-CTTS-CTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCE
T ss_pred             ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCcc-Chhh-ccccccCCEEECCCCc-cceECHHHhcCcccCCE
Confidence            4788888888888877766788999999999998887642 1223 5678999999999988 6666 456778999999


Q ss_pred             EEecCCccccCcch-hhccCCcCcEEEccCCC
Q 045118          157 LILNPCAYLRKLPE-ELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       157 L~l~~~~~l~~~~~-~~~~l~~L~~l~l~~~~  187 (221)
                      |++++| .++.++. .+..+++|++|++.+++
T Consensus       301 L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          301 LNVSGN-QLTTLEESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             EECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred             EECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence            999995 5677765 46889999999999876

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.61  E-value=2.1e-15  Score=130.70  Aligned_cols=163  Identities=24%  Similarity=0.265  Sum_probs=114.7

Q ss_pred             CCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCce-----e----eehhh----------cc--ccCcCCCC
Q 045118           21 GRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKM-----W----QLSRM----------IL--SEYKFPPS   79 (221)
Q Consensus        21 ~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~----~L~~L----------lp--~l~~~~~~   79 (221)
                      +.+++|++|+++++........+..+.++++|++|+++++.-.     +    +|+.+          .|  .+..+ ++
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~  422 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL-RN  422 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTC-TT
T ss_pred             ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcC-CC
Confidence            4566666666666541111122455555666666666542100     1    11221          22  46677 89


Q ss_pred             ccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeCCCCCCCccEEE
Q 045118           80 LTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMGAGAMPKLESLI  158 (221)
Q Consensus        80 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~L~~L~  158 (221)
                      |+.|++++|.+....+..++.+++|++|++++|.+....++.. +..+++|+.|++++|. ++++ +..++.+++|++|+
T Consensus       423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~  500 (570)
T 2z63_A          423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLN  500 (570)
T ss_dssp             CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEE
T ss_pred             CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhh-hhcccCCCEEECCCCc-cccCChhhhhcccCCCEEe
Confidence            9999999998877666778889999999999888764446666 7889999999999998 7777 56778899999999


Q ss_pred             ecCCccccCcc-hhhccCCcCcEEEccCCC
Q 045118          159 LNPCAYLRKLP-EELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       159 l~~~~~l~~~~-~~~~~l~~L~~l~l~~~~  187 (221)
                      +++| .+..+| ..+..+++|+++++.+++
T Consensus       501 l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          501 MASN-QLKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             CCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence            9995 455554 457899999999999865

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.61  E-value=1.9e-15  Score=132.14  Aligned_cols=106  Identities=15%  Similarity=0.109  Sum_probs=49.4

Q ss_pred             CCccEEEeecccCCCC-CchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeCCCCCCCcc
Q 045118           78 PSLTQLSLSNTELMED-PMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMGAGAMPKLE  155 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~L~  155 (221)
                      ++|+.|++++|.+... .+..++.+++|+.|++++|.+.+. .+.. +..+++|+.|++++|. +.++ +..++.+++|+
T Consensus       448 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~  524 (606)
T 3vq2_A          448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI-SWGV-FDTLHRLQLLNMSHNN-LLFLDSSHYNQLYSLS  524 (606)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE-CTTT-TTTCTTCCEEECCSSC-CSCEEGGGTTTCTTCC
T ss_pred             CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCcc-Chhh-hcccccCCEEECCCCc-CCCcCHHHccCCCcCC
Confidence            4444444444443321 122344444444444444443321 1112 3344555555555554 3333 33445556666


Q ss_pred             EEEecCCccccCcchhhccCC-cCcEEEccCCC
Q 045118          156 SLILNPCAYLRKLPEELWCIK-SLCKLELHWPQ  187 (221)
Q Consensus       156 ~L~l~~~~~l~~~~~~~~~l~-~L~~l~l~~~~  187 (221)
                      .|++++| .++.+|..+..++ +|+++++.+++
T Consensus       525 ~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          525 TLDCSFN-RIETSKGILQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             EEECTTS-CCCCEESCGGGSCTTCCEEECCSCC
T ss_pred             EEECCCC-cCcccCHhHhhhcccCcEEEccCCC
Confidence            6666653 3455555555555 36666666543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.61  E-value=3e-15  Score=128.11  Aligned_cols=174  Identities=18%  Similarity=0.110  Sum_probs=116.8

Q ss_pred             CcceeceecCCCC--ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCc-ee----e----------
Q 045118            3 NLIFISALHPSSC--TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGK-MW----Q----------   65 (221)
Q Consensus         3 ~L~~L~~~~~~~~--~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~----~----------   65 (221)
                      +|++|..-+....  .+..++.+++|+.|++++|.  .....+  +..+++|++|+++++.- .+    +          
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~  110 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV--LYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN  110 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC--CEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC--CCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCc
Confidence            5666664333222  45678999999999999886  333333  78888888888876310 00    1          


Q ss_pred             -----------ehhh----------cc-ccCcCCCCccEEEeecccCCCCCchhhc-cCCCCcEEEecCCccCCceeeee
Q 045118           66 -----------LSRM----------IL-SEYKFPPSLTQLSLSNTELMEDPMPTLE-KLPHLEVLKLKQNSYLERKLACV  122 (221)
Q Consensus        66 -----------L~~L----------lp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~l~~~  122 (221)
                                 |+.|          .| .++.+ ++|+.|++++|.+...++..+. .+++|+.|++++|.+.+  ++ .
T Consensus       111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~--~~-~  186 (487)
T 3oja_A          111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--VK-G  186 (487)
T ss_dssp             CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE--EE-C
T ss_pred             CCCCCccccCCCCEEECCCCCCCCCCchhhcCC-CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc--cc-c
Confidence                       1111          12 44555 6777777777776654444444 56777777777776654  22 2


Q ss_pred             CCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118          123 GCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       123 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                       ...+++|+.|++++|. +.+++..++.+++|+.|++++ +.+..+|..+..+++|+.+++.+++
T Consensus       187 -~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~  248 (487)
T 3oja_A          187 -QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNG  248 (487)
T ss_dssp             -CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCC
T ss_pred             -cccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCCCC
Confidence             3357788888888877 777776777788888888888 4566778778888889999988876

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.60  E-value=1.9e-15  Score=119.81  Aligned_cols=129  Identities=16%  Similarity=0.135  Sum_probs=91.3

Q ss_pred             CCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhhccCC
Q 045118           24 PNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKLP  102 (221)
Q Consensus        24 ~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~  102 (221)
                      ++|++|+++++.  .....+..+.++++|++|+++++    ++..+.+ .+..+ ++|++|++++|.+...++..++.++
T Consensus        28 ~~l~~L~ls~n~--l~~~~~~~~~~l~~L~~L~l~~n----~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~  100 (276)
T 2z62_A           28 FSTKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRC----EIQTIEDGAYQSL-SHLSTLILTGNPIQSLALGAFSGLS  100 (276)
T ss_dssp             TTCCEEECTTCC--CCEECTTTTTTCTTCSEEECTTC----CCCEECTTTTTTC-TTCCEEECTTCCCCEECTTTTTTCT
T ss_pred             CCccEEECCCCc--ccccCHhHhccccCCcEEECCCC----cCCccCHHHccCC-cCCCEEECCCCccCccChhhhcCCc
Confidence            579999999996  44444458899999999999884    2233122 56777 7888888888887766656677788


Q ss_pred             CCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccc--eeeCCCCCCCccEEEecCC
Q 045118          103 HLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEE--WTMGAGAMPKLESLILNPC  162 (221)
Q Consensus       103 ~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~--~~~~~~~l~~L~~L~l~~~  162 (221)
                      +|++|++++|.+... .+.. +..+++|++|+++++. +..  ++..++.+++|++|++++|
T Consensus       101 ~L~~L~l~~n~l~~~-~~~~-~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N  159 (276)
T 2z62_A          101 SLQKLVAVETNLASL-ENFP-IGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN  159 (276)
T ss_dssp             TCCEEECTTSCCCCS-TTCC-CTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             cccEEECCCCCcccc-Cchh-cccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCC
Confidence            888888877776542 1223 5567788888887776 554  4556667778888888774

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.60  E-value=3.4e-15  Score=130.73  Aligned_cols=166  Identities=25%  Similarity=0.300  Sum_probs=130.2

Q ss_pred             CCcceeceecCCCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCcc
Q 045118            2 KNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLT   81 (221)
Q Consensus         2 ~~L~~L~~~~~~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~   81 (221)
                      ++|+.|..-......++.++.+++|+.|+++.+.   ...++. +..+++|+.|+++++    .+.. +|.+..+ ++|+
T Consensus        43 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~---l~~~~~-l~~l~~L~~L~Ls~N----~l~~-l~~l~~l-~~L~  112 (605)
T 1m9s_A           43 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK---LTDIKP-LTNLKNLGWLFLDEN----KIKD-LSSLKDL-KKLK  112 (605)
T ss_dssp             TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSC---CCCCGG-GGGCTTCCEEECCSS----CCCC-CTTSTTC-TTCC
T ss_pred             CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCC---CCCChh-hccCCCCCEEECcCC----CCCC-ChhhccC-CCCC
Confidence            4556665333333344568899999999999995   334444 899999999999985    2333 5678888 9999


Q ss_pred             EEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecC
Q 045118           82 QLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNP  161 (221)
Q Consensus        82 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~  161 (221)
                      .|++++|.+...  +.++.+++|+.|++++|.+..  ++ . +..+++|+.|+|++|. +.+++. +..+++|+.|++++
T Consensus       113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~--l~-~-l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~  184 (605)
T 1m9s_A          113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD--IT-V-LSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSK  184 (605)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCC--CG-G-GGSCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCS
T ss_pred             EEEecCCCCCCC--ccccCCCccCEEECCCCccCC--ch-h-hcccCCCCEEECcCCc-CCCchh-hccCCCCCEEECcC
Confidence            999999998864  578899999999999998766  32 4 6689999999999998 776654 77899999999998


Q ss_pred             CccccCcchhhccCCcCcEEEccCCC
Q 045118          162 CAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       162 ~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      | .+..++ .+..+++|+.|++.+++
T Consensus       185 N-~i~~l~-~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          185 N-HISDLR-ALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             S-CCCBCG-GGTTCTTCSEEECCSEE
T ss_pred             C-CCCCCh-HHccCCCCCEEEccCCc
Confidence            5 566665 58899999999998864

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.60  E-value=7.6e-15  Score=116.29  Aligned_cols=154  Identities=25%  Similarity=0.247  Sum_probs=119.0

Q ss_pred             CCCcceeceecCCCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCC
Q 045118            1 LKNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPS   79 (221)
Q Consensus         1 L~~L~~L~~~~~~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~   79 (221)
                      +++|+.|.........++.++.+++|++|+++++.  .....+..+.++++|++|+++++    ++..+.+ .+..+ ++
T Consensus        62 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l-~~  134 (272)
T 3rfs_A           62 LPNVRYLALGGNKLHDISALKELTNLTYLILTGNQ--LQSLPNGVFDKLTNLKELVLVEN----QLQSLPDGVFDKL-TN  134 (272)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECTTS----CCCCCCTTTTTTC-TT
T ss_pred             CCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCc--cCccChhHhcCCcCCCEEECCCC----cCCccCHHHhccC-CC
Confidence            35677776443333345679999999999999996  44444556899999999999984    2333223 57888 99


Q ss_pred             ccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCCCCCccEEE
Q 045118           80 LTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGAMPKLESLI  158 (221)
Q Consensus        80 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~  158 (221)
                      |++|++++|.+...+...++.+++|++|++++|.+..  ++...+..+++|+.|++++|. +.+++.. ++.+++|+.|+
T Consensus       135 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~  211 (272)
T 3rfs_A          135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS--LPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIW  211 (272)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEE
T ss_pred             CCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc--cCHHHhcCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEE
Confidence            9999999999998776678899999999999998765  332214678999999999998 7777544 57799999999


Q ss_pred             ecCCcc
Q 045118          159 LNPCAY  164 (221)
Q Consensus       159 l~~~~~  164 (221)
                      +++|+.
T Consensus       212 l~~N~~  217 (272)
T 3rfs_A          212 LHDNPW  217 (272)
T ss_dssp             CCSSCB
T ss_pred             ccCCCc
Confidence            999754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.60  E-value=2.8e-15  Score=131.21  Aligned_cols=101  Identities=21%  Similarity=0.179  Sum_probs=54.1

Q ss_pred             CccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEE
Q 045118           79 SLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLI  158 (221)
Q Consensus        79 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~  158 (221)
                      +|+.|++++|.+...  ..++.+++|+.|++++|.+.+. .+.. +..+++|+.|++++|. +..++...+.+++|+.|+
T Consensus       233 ~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~-~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~  307 (597)
T 3oja_B          233 ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKI-MYHP-FVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLD  307 (597)
T ss_dssp             CCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEE-ESGG-GTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEE
T ss_pred             CCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCC-CHHH-hcCccCCCEEECCCCC-CCCCCcccccCCCCcEEE
Confidence            344444444444322  3456666777777766665432 2323 5556666666666665 566655555566666666


Q ss_pred             ecCCccccCcchhhccCCcCcEEEccC
Q 045118          159 LNPCAYLRKLPEELWCIKSLCKLELHW  185 (221)
Q Consensus       159 l~~~~~l~~~~~~~~~l~~L~~l~l~~  185 (221)
                      +++| .+..+|..+..+++|++|++.+
T Consensus       308 Ls~N-~l~~i~~~~~~l~~L~~L~L~~  333 (597)
T 3oja_B          308 LSHN-HLLHVERNQPQFDRLENLYLDH  333 (597)
T ss_dssp             CCSS-CCCCCGGGHHHHTTCSEEECCS
T ss_pred             CCCC-CCCccCcccccCCCCCEEECCC
Confidence            6663 3445554444444444444433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.60  E-value=2.7e-15  Score=123.03  Aligned_cols=157  Identities=20%  Similarity=0.150  Sum_probs=86.0

Q ss_pred             hcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCCCc-
Q 045118           19 ILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMEDPM-   95 (221)
Q Consensus        19 ~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~~~-   95 (221)
                      .++++++|++|+++++.  .....+..+.++++|++|+++++    .+.. +|  .++.+ ++|++|++++|.+...+. 
T Consensus        71 ~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n----~l~~-~~~~~~~~l-~~L~~L~L~~n~l~~l~~~  142 (353)
T 2z80_A           71 DLQRCVNLQALVLTSNG--INTIEEDSFSSLGSLEHLDLSYN----YLSN-LSSSWFKPL-SSLTFLNLLGNPYKTLGET  142 (353)
T ss_dssp             TTTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECCSS----CCSS-CCHHHHTTC-TTCSEEECTTCCCSSSCSS
T ss_pred             HhccCCCCCEEECCCCc--cCccCHhhcCCCCCCCEEECCCC----cCCc-CCHhHhCCC-ccCCEEECCCCCCcccCch
Confidence            46666666666666664  33333455666666666666653    1222 33  35556 666666666666665443 


Q ss_pred             hhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeCCCCCCCccEEEecCCccccCcchh-hc
Q 045118           96 PTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMGAGAMPKLESLILNPCAYLRKLPEE-LW  173 (221)
Q Consensus        96 ~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~  173 (221)
                      ..++.+++|++|++++|.......+.. +..+++|+.|+++++. +... +..++.+++|++|++++|. +..+|.. +.
T Consensus       143 ~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~  219 (353)
T 2z80_A          143 SLFSHLTKLQILRVGNMDTFTKIQRKD-FAGLTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVD  219 (353)
T ss_dssp             CSCTTCTTCCEEEEEESSSCCEECTTT-TTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECSC-STTHHHHHHH
T ss_pred             hhhccCCCCcEEECCCCccccccCHHH-ccCCCCCCEEECCCCC-cCccCHHHHhccccCCeecCCCCc-cccchhhhhh
Confidence            345566666666666553222111222 4456666666666665 4444 4445556666666666633 4444433 23


Q ss_pred             cCCcCcEEEccCC
Q 045118          174 CIKSLCKLELHWP  186 (221)
Q Consensus       174 ~l~~L~~l~l~~~  186 (221)
                      .+++|++|++.++
T Consensus       220 ~~~~L~~L~L~~n  232 (353)
T 2z80_A          220 VTSSVECLELRDT  232 (353)
T ss_dssp             HTTTEEEEEEESC
T ss_pred             hcccccEEECCCC
Confidence            4566666666554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.59  E-value=5.5e-15  Score=127.00  Aligned_cols=154  Identities=21%  Similarity=0.224  Sum_probs=125.6

Q ss_pred             CCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhh--cc-ccCcCCCCccEEEeecccCCC-CCch
Q 045118           21 GRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRM--IL-SEYKFPPSLTQLSLSNTELME-DPMP   96 (221)
Q Consensus        21 ~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L--lp-~l~~~~~~L~~L~l~~~~~~~-~~~~   96 (221)
                      +.+++|++|+++++.  ..+..|..++++++|++|+++++    ++..+  +| .++.+ ++|+.|++++|.+.. .+..
T Consensus       321 ~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~N----~l~~l~~~~~~~~~l-~~L~~L~Ls~N~l~~~l~~~  393 (520)
T 2z7x_B          321 SKISPFLHLDFSNNL--LTDTVFENCGHLTELETLILQMN----QLKELSKIAEMTTQM-KSLQQLDISQNSVSYDEKKG  393 (520)
T ss_dssp             SSCCCCCEEECCSSC--CCTTTTTTCCCCSSCCEEECCSS----CCCBHHHHHHHHTTC-TTCCEEECCSSCCBCCGGGC
T ss_pred             hhCCcccEEEeECCc--cChhhhhhhccCCCCCEEEccCC----ccCccccchHHHhhC-CCCCEEECCCCcCCcccccc
Confidence            688999999999997  66667888999999999999885    22321  44 67888 999999999999986 4444


Q ss_pred             hhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchh-hccC
Q 045118           97 TLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEE-LWCI  175 (221)
Q Consensus        97 ~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~l  175 (221)
                      .+..+++|++|++++|.+.+. .+.. .  .++|+.|++++|. ++.++.....+++|+.|++++| .++.+|.. +..+
T Consensus       394 ~~~~l~~L~~L~Ls~N~l~~~-~~~~-l--~~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l  467 (520)
T 2z7x_B          394 DCSWTKSLLSLNMSSNILTDT-IFRC-L--PPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRL  467 (520)
T ss_dssp             SCCCCTTCCEEECCSSCCCGG-GGGS-C--CTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred             hhccCccCCEEECcCCCCCcc-hhhh-h--cccCCEEECCCCc-ccccchhhhcCCCCCEEECCCC-cCCccCHHHhccC
Confidence            578899999999999887643 2222 2  2799999999998 8888887778999999999995 67788876 8899


Q ss_pred             CcCcEEEccCCC
Q 045118          176 KSLCKLELHWPQ  187 (221)
Q Consensus       176 ~~L~~l~l~~~~  187 (221)
                      ++|+++++.+++
T Consensus       468 ~~L~~L~l~~N~  479 (520)
T 2z7x_B          468 TSLQKIWLHTNP  479 (520)
T ss_dssp             TTCCEEECCSSC
T ss_pred             CcccEEECcCCC
Confidence            999999999876

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.59  E-value=2.8e-14  Score=110.74  Aligned_cols=150  Identities=13%  Similarity=0.137  Sum_probs=98.4

Q ss_pred             CccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeec-ccCCCCCchhhccC
Q 045118           25 NVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSN-TELMEDPMPTLEKL  101 (221)
Q Consensus        25 ~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~-~~~~~~~~~~l~~l  101 (221)
                      ++++|+++++.  .....+..+.++++|++|+++++..   ++. ++  .+..+ ++|++|++++ |.+...+...++.+
T Consensus        32 ~l~~L~l~~n~--l~~i~~~~~~~l~~L~~L~l~~n~~---l~~-i~~~~f~~l-~~L~~L~l~~~n~l~~i~~~~f~~l  104 (239)
T 2xwt_C           32 STQTLKLIETH--LRTIPSHAFSNLPNISRIYVSIDVT---LQQ-LESHSFYNL-SKVTHIEIRNTRNLTYIDPDALKEL  104 (239)
T ss_dssp             TCCEEEEESCC--CSEECTTTTTTCTTCCEEEEECCSS---CCE-ECTTTEESC-TTCCEEEEEEETTCCEECTTSEECC
T ss_pred             cccEEEEeCCc--ceEECHHHccCCCCCcEEeCCCCCC---cce-eCHhHcCCC-cCCcEEECCCCCCeeEcCHHHhCCC
Confidence            67788888775  3333334677788888888877410   222 33  56667 7888888887 77776655567778


Q ss_pred             CCCcEEEecCCccCCceeeeeCCCCCCccc---EEeccccccccceeeC-CCCCCCcc-EEEecCCccccCcchhhccCC
Q 045118          102 PHLEVLKLKQNSYLERKLACVGCSSFSQLK---ILHLKSMLWLEEWTMG-AGAMPKLE-SLILNPCAYLRKLPEELWCIK  176 (221)
Q Consensus       102 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~---~L~L~~~~~l~~~~~~-~~~l~~L~-~L~l~~~~~l~~~~~~~~~l~  176 (221)
                      ++|++|++++|.+..  ++ . +..+++|+   .|+++++..++.++.. +..+++|+ .|++++ +.+..+|......+
T Consensus       105 ~~L~~L~l~~n~l~~--lp-~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~~~  179 (239)
T 2xwt_C          105 PLLKFLGIFNTGLKM--FP-D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNGT  179 (239)
T ss_dssp             TTCCEEEEEEECCCS--CC-C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTTTC
T ss_pred             CCCCEEeCCCCCCcc--cc-c-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhcCCC
Confidence            888888887777654  33 1 34555665   8888777337766543 56677788 888877 34556665544447


Q ss_pred             cCcEEEccCC
Q 045118          177 SLCKLELHWP  186 (221)
Q Consensus       177 ~L~~l~l~~~  186 (221)
                      +|+++++.++
T Consensus       180 ~L~~L~L~~n  189 (239)
T 2xwt_C          180 KLDAVYLNKN  189 (239)
T ss_dssp             EEEEEECTTC
T ss_pred             CCCEEEcCCC
Confidence            7788887776

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.59  E-value=1e-14  Score=127.45  Aligned_cols=162  Identities=22%  Similarity=0.211  Sum_probs=91.7

Q ss_pred             cCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecC------cee----eehhh----------cc--ccCcCC
Q 045118           20 LGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKG------KMW----QLSRM----------IL--SEYKFP   77 (221)
Q Consensus        20 l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~------~~~----~L~~L----------lp--~l~~~~   77 (221)
                      ++++++|++|+++++........+..+.++++|++|+++++.      ..+    +|+.+          .|  ++..+ 
T Consensus       346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-  424 (606)
T 3t6q_A          346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL-  424 (606)
T ss_dssp             TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTC-
T ss_pred             hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCc-
Confidence            666666666666666411111114455566666666665521      000    12221          12  35666 


Q ss_pred             CCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceee--eeCCCCCCcccEEeccccccccce-eeCCCCCCCc
Q 045118           78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLA--CVGCSSFSQLKILHLKSMLWLEEW-TMGAGAMPKL  154 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~--~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~L  154 (221)
                      ++|+.|++++|.+...++..++.+++|++|++++|.+.+..++  .. +..+++|+.|++++|. +.++ +..++.+++|
T Consensus       425 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L  502 (606)
T 3t6q_A          425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS-LQTLGRLEILVLSFCD-LSSIDQHAFTSLKMM  502 (606)
T ss_dssp             TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCG-GGGCTTCCEEECTTSC-CCEECTTTTTTCTTC
T ss_pred             ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchh-hccCCCccEEECCCCc-cCccChhhhccccCC
Confidence            7788888888877766556677778888888877776543222  12 4456777777777776 5555 3455667777


Q ss_pred             cEEEecCCccccCcchhhccCCcCcEEEccC
Q 045118          155 ESLILNPCAYLRKLPEELWCIKSLCKLELHW  185 (221)
Q Consensus       155 ~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~  185 (221)
                      +.|++++|.-....|..+.+++.| ++++.+
T Consensus       503 ~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~  532 (606)
T 3t6q_A          503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLAS  532 (606)
T ss_dssp             CEEECCSSCCCGGGGGGGTTCCSC-EEECCS
T ss_pred             CEEECCCCccCcCChhHhCccccc-EEECcC
Confidence            777777654322334444444444 444443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.59  E-value=1e-14  Score=116.78  Aligned_cols=157  Identities=26%  Similarity=0.285  Sum_probs=124.7

Q ss_pred             ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCc
Q 045118           16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPM   95 (221)
Q Consensus        16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~   95 (221)
                      +|..+.  ++++.|+++++.  .....+..+.++++|++|+++++    .+.. ++..+.+ ++|+.|++++|.+...+ 
T Consensus        25 ip~~~~--~~l~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~n----~l~~-~~~~~~l-~~L~~L~Ls~N~l~~l~-   93 (290)
T 1p9a_G           25 LPPDLP--KDTTILHLSENL--LYTFSLATLMPYTRLTQLNLDRA----ELTK-LQVDGTL-PVLGTLDLSHNQLQSLP-   93 (290)
T ss_dssp             CCSCCC--TTCCEEECTTSC--CSEEEGGGGTTCTTCCEEECTTS----CCCE-EECCSCC-TTCCEEECCSSCCSSCC-
T ss_pred             CCCCCC--CCCCEEEcCCCc--CCccCHHHhhcCCCCCEEECCCC----ccCc-ccCCCCC-CcCCEEECCCCcCCcCc-
Confidence            444443  689999999997  55556778999999999999984    2233 4545777 99999999999998665 


Q ss_pred             hhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCCCCCccEEEecCCccccCcchh-hc
Q 045118           96 PTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYLRKLPEE-LW  173 (221)
Q Consensus        96 ~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~-~~  173 (221)
                      ..++.+++|++|++++|.+... .+.. +..+++|+.|+++++. +..++.. +..+++|+.|++++ +.++.+|.+ +.
T Consensus        94 ~~~~~l~~L~~L~l~~N~l~~l-~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~  169 (290)
T 1p9a_G           94 LLGQTLPALTVLDVSFNRLTSL-PLGA-LRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLN  169 (290)
T ss_dssp             CCTTTCTTCCEEECCSSCCCCC-CSST-TTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTT
T ss_pred             hhhccCCCCCEEECCCCcCccc-CHHH-HcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCC-CcCCccCHHHhc
Confidence            4678899999999999988752 1234 6678999999999998 7777544 46789999999998 567788765 57


Q ss_pred             cCCcCcEEEccCCC
Q 045118          174 CIKSLCKLELHWPQ  187 (221)
Q Consensus       174 ~l~~L~~l~l~~~~  187 (221)
                      .+++|++|++.++.
T Consensus       170 ~l~~L~~L~L~~N~  183 (290)
T 1p9a_G          170 GLENLDTLLLQENS  183 (290)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             CcCCCCEEECCCCc
Confidence            89999999998875

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.59  E-value=2.2e-14  Score=113.43  Aligned_cols=152  Identities=23%  Similarity=0.291  Sum_probs=122.0

Q ss_pred             CCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCCCchhhccC
Q 045118           24 PNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMEDPMPTLEKL  101 (221)
Q Consensus        24 ~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l  101 (221)
                      +++++|+++++.  .....+..+.++++|++|+++++    .+.. +|  .+..+ ++|++|++++|.+...+...++.+
T Consensus        37 ~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n----~l~~-i~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l  108 (270)
T 2o6q_A           37 ADTKKLDLQSNK--LSSLPSKAFHRLTKLRLLYLNDN----KLQT-LPAGIFKEL-KNLETLWVTDNKLQALPIGVFDQL  108 (270)
T ss_dssp             TTCSEEECCSSC--CSCCCTTSSSSCTTCCEEECCSS----CCSC-CCTTTTSSC-TTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCCEEECcCCC--CCeeCHHHhcCCCCCCEEECCCC----ccCe-eChhhhcCC-CCCCEEECCCCcCCcCCHhHcccc
Confidence            679999999996  44444457899999999999884    2333 44  46778 999999999999998877778899


Q ss_pred             CCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCCCCCccEEEecCCccccCcch-hhccCCcCc
Q 045118          102 PHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYLRKLPE-ELWCIKSLC  179 (221)
Q Consensus       102 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~  179 (221)
                      ++|++|++++|.+... .+.. +..+++|+.|+++++. +..++.. ++.+++|++|++++| .+..++. .+..+++|+
T Consensus       109 ~~L~~L~l~~n~l~~~-~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~  184 (270)
T 2o6q_A          109 VNLAELRLDRNQLKSL-PPRV-FDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELK  184 (270)
T ss_dssp             SSCCEEECCSSCCCCC-CTTT-TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCC
T ss_pred             cCCCEEECCCCccCee-CHHH-hCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcC
Confidence            9999999999887652 2223 5678999999999998 7777654 677999999999985 5666654 478899999


Q ss_pred             EEEccCCC
Q 045118          180 KLELHWPQ  187 (221)
Q Consensus       180 ~l~l~~~~  187 (221)
                      +|++.++.
T Consensus       185 ~L~L~~N~  192 (270)
T 2o6q_A          185 TLKLDNNQ  192 (270)
T ss_dssp             EEECCSSC
T ss_pred             EEECCCCc
Confidence            99998864

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.58  E-value=1e-14  Score=110.18  Aligned_cols=147  Identities=18%  Similarity=0.281  Sum_probs=113.9

Q ss_pred             CCcceeceecCCCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCc
Q 045118            2 KNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSL   80 (221)
Q Consensus         2 ~~L~~L~~~~~~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L   80 (221)
                      ++|++|..-.......+.++.+++|++|+++++.   ... ++.+..+++|++|+++++    .+....+ .++.+ ++|
T Consensus        44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~---~~~-~~~l~~l~~L~~L~l~~n----~l~~~~~~~l~~l-~~L  114 (197)
T 4ezg_A           44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIH---ATN-YNPISGLSNLERLRIMGK----DVTSDKIPNLSGL-TSL  114 (197)
T ss_dssp             HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCC---CSC-CGGGTTCTTCCEEEEECT----TCBGGGSCCCTTC-TTC
T ss_pred             CCccEEeccCCCccChHHHhcCCCCCEEEccCCC---CCc-chhhhcCCCCCEEEeECC----ccCcccChhhcCC-CCC
Confidence            4567776444333332378999999999999994   233 347889999999999984    1222123 78888 999


Q ss_pred             cEEEeecccCCCCCchhhccCCCCcEEEecCCc-cCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEe
Q 045118           81 TQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNS-YLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLIL  159 (221)
Q Consensus        81 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l  159 (221)
                      ++|++++|.+....+..++.+++|++|++++|. +..  ++ . +..+++|+.|++++|. +.+++ .+..+++|++|++
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~--~~-~-l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l  188 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD--IM-P-LKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYA  188 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC--CG-G-GGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEE
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc--cH-h-hcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEe
Confidence            999999999987667789999999999999987 544  44 4 6689999999999998 77765 6677999999999


Q ss_pred             cCCc
Q 045118          160 NPCA  163 (221)
Q Consensus       160 ~~~~  163 (221)
                      +++.
T Consensus       189 ~~N~  192 (197)
T 4ezg_A          189 FSQT  192 (197)
T ss_dssp             CBC-
T ss_pred             eCcc
Confidence            9854

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.58  E-value=8.2e-15  Score=128.09  Aligned_cols=165  Identities=21%  Similarity=0.183  Sum_probs=111.5

Q ss_pred             cCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecC-----cee----eehhh----------cc--ccCcCCC
Q 045118           20 LGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKG-----KMW----QLSRM----------IL--SEYKFPP   78 (221)
Q Consensus        20 l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-----~~~----~L~~L----------lp--~l~~~~~   78 (221)
                      ++.+++|++|+++++........+..+..+++|++|+++++.     ..+    +|+.+          .|  .+..+ +
T Consensus       346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~  424 (606)
T 3vq2_A          346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL-E  424 (606)
T ss_dssp             CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC-T
T ss_pred             hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhcc-c
Confidence            445555555555555311111135666667777777776531     001    22222          22  45666 7


Q ss_pred             CccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeCCCCCCCccEE
Q 045118           79 SLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMGAGAMPKLESL  157 (221)
Q Consensus        79 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~L~~L  157 (221)
                      +|+.|++++|.+....+..++.+++|++|++++|.+.+...+.. +..+++|+.|++++|. +.++ +..++.+++|++|
T Consensus       425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L  502 (606)
T 3vq2_A          425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV-FANTTNLTFLDLSKCQ-LEQISWGVFDTLHRLQLL  502 (606)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEE
T ss_pred             cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHh-hccCCCCCEEECCCCc-CCccChhhhcccccCCEE
Confidence            88888888888776666678888888999988887765445555 7788999999999887 6666 4457788999999


Q ss_pred             EecCCccccCcchhhccCCcCcEEEccCCC
Q 045118          158 ILNPCAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       158 ~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      ++++|.-....|..+..+++|++|++.++.
T Consensus       503 ~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  532 (606)
T 3vq2_A          503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNR  532 (606)
T ss_dssp             ECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred             ECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence            999865433447788899999999998875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.58  E-value=2.1e-14  Score=117.23  Aligned_cols=173  Identities=17%  Similarity=0.199  Sum_probs=105.8

Q ss_pred             CCcceeceecCC-CCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCc-e---e----eehhh---
Q 045118            2 KNLIFISALHPS-SCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGK-M---W----QLSRM---   69 (221)
Q Consensus         2 ~~L~~L~~~~~~-~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~---~----~L~~L---   69 (221)
                      ++|+.|...... ...+..++.+++|++|+++++.   ...++. +..+++|++|+++++.- .   +    +|+.+   
T Consensus       132 ~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~  207 (347)
T 4fmz_A          132 TKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK---VKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAY  207 (347)
T ss_dssp             TTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC---CCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECC
T ss_pred             CceeEEECCCCCCcccccchhhCCCCcEEEecCCC---cCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecc
Confidence            456666533221 1244557888888888888875   233332 67788888888876310 0   0    11111   


Q ss_pred             ------ccccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccc
Q 045118           70 ------ILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEE  143 (221)
Q Consensus        70 ------lp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~  143 (221)
                            ++.+..+ ++|+.|++++|.+...+  .++.+++|++|++++|.+..  ++ . ...+++|+.|++++|. +.+
T Consensus       208 ~n~l~~~~~~~~~-~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~--~~-~-~~~l~~L~~L~l~~n~-l~~  279 (347)
T 4fmz_A          208 VNQITDITPVANM-TRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQISD--IN-A-VKDLTKLKMLNVGSNQ-ISD  279 (347)
T ss_dssp             SSCCCCCGGGGGC-TTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC--CG-G-GTTCTTCCEEECCSSC-CCC
T ss_pred             cCCCCCCchhhcC-CcCCEEEccCCccCCCc--chhcCCCCCEEECCCCccCC--Ch-h-HhcCCCcCEEEccCCc-cCC
Confidence                  1234555 67777777777776544  26677777777777766554  22 3 4567777777777775 555


Q ss_pred             eeeCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118          144 WTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       144 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      ++ .+..+++|+.|++++|......|..+..+++|++|++.+++
T Consensus       280 ~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          280 IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             CG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred             Ch-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence            53 35567777777777754333445556777777777777765

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.58  E-value=6.1e-15  Score=124.61  Aligned_cols=111  Identities=24%  Similarity=0.259  Sum_probs=88.6

Q ss_pred             ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeCCCC
Q 045118           72 SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMGAGA  150 (221)
Q Consensus        72 ~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~  150 (221)
                      +++.+ ++|+.|++++|.+...++..++.+++|++|++++|.+... .+.. +..+++|+.|++++|. +..+ +..++.
T Consensus       294 ~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~  369 (455)
T 3v47_A          294 VFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI-DSRM-FENLDKLEVLDLSYNH-IRALGDQSFLG  369 (455)
T ss_dssp             TTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGG-GTTCTTCCEEECCSSC-CCEECTTTTTT
T ss_pred             hcccC-CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc-ChhH-hcCcccCCEEECCCCc-ccccChhhccc
Confidence            56777 8999999999988877666888899999999988877442 2334 6678999999999988 6766 556778


Q ss_pred             CCCccEEEecCCccccCcch-hhccCCcCcEEEccCCC
Q 045118          151 MPKLESLILNPCAYLRKLPE-ELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       151 l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~l~l~~~~  187 (221)
                      +++|++|++++ +.++.+|. .+..+++|++|++.+++
T Consensus       370 l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          370 LPNLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             CTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cccccEEECCC-CccccCCHhHhccCCcccEEEccCCC
Confidence            99999999998 55677765 45889999999998765

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.58  E-value=2.6e-14  Score=116.22  Aligned_cols=171  Identities=18%  Similarity=0.175  Sum_probs=93.0

Q ss_pred             CcceeceecCCCC--ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCC
Q 045118            3 NLIFISALHPSSC--TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPS   79 (221)
Q Consensus         3 ~L~~L~~~~~~~~--~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~   79 (221)
                      +|+.|........  .+..++++++|++|+++++.  .....+..++++++|++|+++++.    +.. +| .+  . ++
T Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~----l~~-l~~~~--~-~~  124 (332)
T 2ft3_A           55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK--ISKIHEKAFSPLRKLQKLYISKNH----LVE-IPPNL--P-SS  124 (332)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--CCEECGGGSTTCTTCCEEECCSSC----CCS-CCSSC--C-TT
T ss_pred             CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc--cCccCHhHhhCcCCCCEEECCCCc----CCc-cCccc--c-cc
Confidence            4555553322222  34568888899999988886  555557788888999999988741    111 12 11  1 34


Q ss_pred             ccEEEeecccCCCCCchhhccCCCCcEEEecCCcc---------------------------------------------
Q 045118           80 LTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSY---------------------------------------------  114 (221)
Q Consensus        80 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~---------------------------------------------  114 (221)
                      |++|++++|.+...+...++.+++|+.|++++|.+                                             
T Consensus       125 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~  204 (332)
T 2ft3_A          125 LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNK  204 (332)
T ss_dssp             CCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSC
T ss_pred             CCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCc
Confidence            44444444444433333344444444444443332                                             


Q ss_pred             -CCceeeeeCCCCCCcccEEeccccccccceee-CCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118          115 -LERKLACVGCSSFSQLKILHLKSMLWLEEWTM-GAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       115 -~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                       ... .+.. +..+++|+.|+++++. +.+++. .++.+++|+.|++++ +.+..+|..+..+++|++|++.++.
T Consensus       205 i~~~-~~~~-l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~N~  275 (332)
T 2ft3_A          205 IQAI-ELED-LLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDN-NKLSRVPAGLPDLKLLQVVYLHTNN  275 (332)
T ss_dssp             CCCC-CTTS-STTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCS-SCCCBCCTTGGGCTTCCEEECCSSC
T ss_pred             CCcc-CHHH-hcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCC-CcCeecChhhhcCccCCEEECCCCC
Confidence             211 0011 3344556666665555 444432 345566777777776 3455666666777777777776654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.58  E-value=1.8e-14  Score=121.65  Aligned_cols=39  Identities=15%  Similarity=0.226  Sum_probs=17.5

Q ss_pred             hcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeee
Q 045118           19 ILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVN   59 (221)
Q Consensus        19 ~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~   59 (221)
                      .++++++|++|+++++.  .....|..++++++|++|++++
T Consensus        74 ~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~  112 (455)
T 3v47_A           74 TFRGLSSLIILKLDYNQ--FLQLETGAFNGLANLEVLTLTQ  112 (455)
T ss_dssp             TTTTCTTCCEEECTTCT--TCEECTTTTTTCTTCCEEECTT
T ss_pred             cccccccCCEEeCCCCc--cCccChhhccCcccCCEEeCCC
Confidence            34455555555555443  2223334444444444444443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.57  E-value=1.5e-14  Score=125.57  Aligned_cols=153  Identities=18%  Similarity=0.200  Sum_probs=126.8

Q ss_pred             CCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhh--cc-ccCcCCCCccEEEeecccCCC-CCch
Q 045118           21 GRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRM--IL-SEYKFPPSLTQLSLSNTELME-DPMP   96 (221)
Q Consensus        21 ~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L--lp-~l~~~~~~L~~L~l~~~~~~~-~~~~   96 (221)
                      +.+++|++|+++++.  ..+..|..+.++++|++|+++++    +++.+  +| .+..+ ++|+.|++++|.+.. .+..
T Consensus       350 ~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~L~~N----~l~~~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~  422 (562)
T 3a79_B          350 PSPSSFTFLNFTQNV--FTDSVFQGCSTLKRLQTLILQRN----GLKNFFKVALMTKNM-SSLETLDVSLNSLNSHAYDR  422 (562)
T ss_dssp             SSCCCCCEEECCSSC--CCTTTTTTCCSCSSCCEEECCSS----CCCBTTHHHHTTTTC-TTCCEEECTTSCCBSCCSSC
T ss_pred             cCCCCceEEECCCCc--cccchhhhhcccCCCCEEECCCC----CcCCcccchhhhcCC-CCCCEEECCCCcCCCccChh
Confidence            788999999999997  66667888999999999999985    22331  34 57888 999999999999986 5555


Q ss_pred             hhccCCCCcEEEecCCccCCceeeeeCCCCC-CcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchh-hcc
Q 045118           97 TLEKLPHLEVLKLKQNSYLERKLACVGCSSF-SQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEE-LWC  174 (221)
Q Consensus        97 ~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~-~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~  174 (221)
                      .+..+++|++|++++|.+.+. .+    ..+ ++|+.|++++|. ++.++.....+++|+.|++++ +.++.+|.. +..
T Consensus       423 ~~~~l~~L~~L~l~~n~l~~~-~~----~~l~~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~  495 (562)
T 3a79_B          423 TCAWAESILVLNLSSNMLTGS-VF----RCLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVAS-NQLKSVPDGVFDR  495 (562)
T ss_dssp             CCCCCTTCCEEECCSSCCCGG-GG----SSCCTTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCS-SCCCCCCTTSTTT
T ss_pred             hhcCcccCCEEECCCCCCCcc-hh----hhhcCcCCEEECCCCc-CcccChhhcCCCCCCEEECCC-CCCCCCCHHHHhc
Confidence            688899999999999987643 22    233 699999999997 888988877899999999998 567788877 889


Q ss_pred             CCcCcEEEccCCC
Q 045118          175 IKSLCKLELHWPQ  187 (221)
Q Consensus       175 l~~L~~l~l~~~~  187 (221)
                      +++|+++++.+++
T Consensus       496 l~~L~~L~l~~N~  508 (562)
T 3a79_B          496 LTSLQYIWLHDNP  508 (562)
T ss_dssp             CTTCCCEECCSCC
T ss_pred             CCCCCEEEecCCC
Confidence            9999999999876

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.57  E-value=1.5e-14  Score=113.13  Aligned_cols=151  Identities=17%  Similarity=0.224  Sum_probs=117.7

Q ss_pred             CcceeceecCCC--CChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCC
Q 045118            3 NLIFISALHPSS--CTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPS   79 (221)
Q Consensus         3 ~L~~L~~~~~~~--~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~   79 (221)
                      +++.|..-....  ..+..++++++|++|+++++.  .....+..+.++++|++|+++++    .+..+.+ .+..+ ++
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l-~~  108 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ--LQTLSAGVFDDLTELGTLGLANN----QLASLPLGVFDHL-TQ  108 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECTTS----CCCCCCTTTTTTC-TT
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc--CCccCHhHhccCCcCCEEECCCC----cccccChhHhccc-CC
Confidence            455665333222  245568999999999999996  55555667899999999999985    2333222 67888 99


Q ss_pred             ccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeee-eCCCCCCcccEEeccccccccceee-CCCCCCCccEE
Q 045118           80 LTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLAC-VGCSSFSQLKILHLKSMLWLEEWTM-GAGAMPKLESL  157 (221)
Q Consensus        80 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~-~~~~~~~~L~~L~L~~~~~l~~~~~-~~~~l~~L~~L  157 (221)
                      |++|++++|.+...+...++.+++|++|++++|.+..  ++. . +..+++|+.|+++++. +..++. .+..+++|+.|
T Consensus       109 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L  184 (251)
T 3m19_A          109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS--IPAGA-FDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTI  184 (251)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTT-TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred             CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc--cCHHH-cCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEE
Confidence            9999999999998776678899999999999998765  333 3 6678999999999998 777754 56779999999


Q ss_pred             EecCCcc
Q 045118          158 ILNPCAY  164 (221)
Q Consensus       158 ~l~~~~~  164 (221)
                      ++++|+.
T Consensus       185 ~l~~N~~  191 (251)
T 3m19_A          185 TLFGNQF  191 (251)
T ss_dssp             ECCSCCB
T ss_pred             EeeCCce
Confidence            9999653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.57  E-value=2.8e-14  Score=116.50  Aligned_cols=143  Identities=20%  Similarity=0.259  Sum_probs=77.7

Q ss_pred             CCcceeceecCCCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCcc
Q 045118            2 KNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLT   81 (221)
Q Consensus         2 ~~L~~L~~~~~~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~   81 (221)
                      ++|++|...+......+.++.+++|++|+++++.   ...++. +.++++|++|+++++    .+.. +|.+..+ ++|+
T Consensus        44 ~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~---i~~~~~-~~~l~~L~~L~L~~n----~i~~-~~~~~~l-~~L~  113 (347)
T 4fmz_A           44 ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQ---ITDISP-LSNLVKLTNLYIGTN----KITD-ISALQNL-TNLR  113 (347)
T ss_dssp             TTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSC---CCCCGG-GTTCTTCCEEECCSS----CCCC-CGGGTTC-TTCS
T ss_pred             ccccEEEEeCCccccchhhhhcCCccEEEccCCc---cccchh-hhcCCcCCEEEccCC----cccC-chHHcCC-CcCC
Confidence            4556665433333334457778888888888874   333444 778888888888774    1122 3455566 6666


Q ss_pred             EEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecC
Q 045118           82 QLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNP  161 (221)
Q Consensus        82 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~  161 (221)
                      +|++++|.+...+  .+..+++|++|++++|..... ++ . ...+++|+.|++.+|. +..++. ++.+++|++|++++
T Consensus       114 ~L~l~~n~i~~~~--~~~~l~~L~~L~l~~n~~~~~-~~-~-~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~  186 (347)
T 4fmz_A          114 ELYLNEDNISDIS--PLANLTKMYSLNLGANHNLSD-LS-P-LSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNY  186 (347)
T ss_dssp             EEECTTSCCCCCG--GGTTCTTCCEEECTTCTTCCC-CG-G-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTT
T ss_pred             EEECcCCcccCch--hhccCCceeEEECCCCCCccc-cc-c-hhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccC
Confidence            6666666665443  255666666666655533221 11 1 3344555555555444 333221 33344444444444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.57  E-value=2.7e-14  Score=115.93  Aligned_cols=162  Identities=15%  Similarity=0.135  Sum_probs=111.0

Q ss_pred             ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecC-cee------eehhh---------cc--ccCcCC
Q 045118           16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKG-KMW------QLSRM---------IL--SEYKFP   77 (221)
Q Consensus        16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~------~L~~L---------lp--~l~~~~   77 (221)
                      .+..++++++|++|+++++.  .....|..+.++++|++|+++++. +.+      +|+.+         ++  .+..+ 
T Consensus        68 ~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-  144 (330)
T 1xku_A           68 KDGDFKNLKNLHTLILINNK--ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL-  144 (330)
T ss_dssp             CTTTTTTCTTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTC-
T ss_pred             ChhhhccCCCCCEEECCCCc--CCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCC-
Confidence            33468889999999999886  445557888899999999998741 000      22222         22  35556 


Q ss_pred             CCccEEEeecccCCC--CCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeCCCCCCCc
Q 045118           78 PSLTQLSLSNTELME--DPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMGAGAMPKL  154 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~L  154 (221)
                      ++|+.|++++|.+..  .....++.+++|++|++++|.+..  ++..   .+++|+.|+++++. ++++ +..+..+++|
T Consensus       145 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--l~~~---~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L  218 (330)
T 1xku_A          145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--IPQG---LPPSLTELHLDGNK-ITKVDAASLKGLNNL  218 (330)
T ss_dssp             TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS--CCSS---CCTTCSEEECTTSC-CCEECTGGGTTCTTC
T ss_pred             ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc--CCcc---ccccCCEEECCCCc-CCccCHHHhcCCCCC
Confidence            677777777776643  233456677777777777766554  3322   34788888888877 6666 4456778999


Q ss_pred             cEEEecCCccccCcc-hhhccCCcCcEEEccCCC
Q 045118          155 ESLILNPCAYLRKLP-EELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       155 ~~L~l~~~~~l~~~~-~~~~~l~~L~~l~l~~~~  187 (221)
                      ++|++++|. +..++ ..+..+++|++|++.++.
T Consensus       219 ~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~  251 (330)
T 1xku_A          219 AKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNK  251 (330)
T ss_dssp             CEEECCSSC-CCEECTTTGGGSTTCCEEECCSSC
T ss_pred             CEEECCCCc-CceeChhhccCCCCCCEEECCCCc
Confidence            999999854 55554 467889999999998875

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.57  E-value=1.8e-14  Score=125.97  Aligned_cols=42  Identities=17%  Similarity=0.226  Sum_probs=25.6

Q ss_pred             ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeee
Q 045118           16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVN   59 (221)
Q Consensus        16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~   59 (221)
                      +|..++++++|++|+++++.  .....+..+.++++|++|++++
T Consensus       293 lp~~l~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~  334 (606)
T 3t6q_A          293 LPSGLVGLSTLKKLVLSANK--FENLCQISASNFPSLTHLSIKG  334 (606)
T ss_dssp             CCSSCCSCTTCCEEECTTCC--CSBGGGGCGGGCTTCSEEECCS
T ss_pred             CChhhcccccCCEEECccCC--cCcCchhhhhccCcCCEEECCC
Confidence            55556667777777777664  3333445566666666666655

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.57  E-value=1.5e-14  Score=117.56  Aligned_cols=174  Identities=20%  Similarity=0.180  Sum_probs=124.4

Q ss_pred             CCcceeceecCCCC--ChhhcCCCCCccEEEEEecCCc-------------------cccchhHhhccCCCCcEEEeeec
Q 045118            2 KNLIFISALHPSSC--TPDILGRLPNVRTFRISGDLSY-------------------YHSGVSKSLCKLHKLECLKLVNK   60 (221)
Q Consensus         2 ~~L~~L~~~~~~~~--~~~~l~~l~~Lr~L~l~~~~~~-------------------~~~~~~~~l~~l~~L~~L~l~~~   60 (221)
                      ++|++|..-.....  .+..++++++|++|+++++...                   .....+..+.++++|++|+++++
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  155 (330)
T 1xku_A           76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN  155 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSS
T ss_pred             CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCC
Confidence            55666653332222  4677888999999998887510                   11122334566666666666653


Q ss_pred             Cceeeehh--hcc-ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccc
Q 045118           61 GKMWQLSR--MIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKS  137 (221)
Q Consensus        61 ~~~~~L~~--Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~  137 (221)
                          .+..  ..+ .+..+ ++|++|++++|.+...+. .+  .++|++|++++|.+... .+.. +..+++|+.|++++
T Consensus       156 ----~l~~~~~~~~~~~~l-~~L~~L~l~~n~l~~l~~-~~--~~~L~~L~l~~n~l~~~-~~~~-~~~l~~L~~L~Ls~  225 (330)
T 1xku_A          156 ----PLKSSGIENGAFQGM-KKLSYIRIADTNITTIPQ-GL--PPSLTELHLDGNKITKV-DAAS-LKGLNNLAKLGLSF  225 (330)
T ss_dssp             ----CCCGGGBCTTGGGGC-TTCCEEECCSSCCCSCCS-SC--CTTCSEEECTTSCCCEE-CTGG-GTTCTTCCEEECCS
T ss_pred             ----cCCccCcChhhccCC-CCcCEEECCCCccccCCc-cc--cccCCEEECCCCcCCcc-CHHH-hcCCCCCCEEECCC
Confidence                1111  123 67778 999999999999886553 22  38999999999887652 2334 66889999999999


Q ss_pred             cccccceee-CCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118          138 MLWLEEWTM-GAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       138 ~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      +. +.+++. .++.+++|++|++++| .+..+|..+..+++|++|++.++.
T Consensus       226 n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~  274 (330)
T 1xku_A          226 NS-ISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN  274 (330)
T ss_dssp             SC-CCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC
T ss_pred             Cc-CceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc
Confidence            98 777754 5677999999999995 677899889999999999999875

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.56  E-value=2.2e-15  Score=132.91  Aligned_cols=158  Identities=15%  Similarity=0.195  Sum_probs=94.9

Q ss_pred             ChhhcCCCCCccEEEEEecCCccccc-----------------hhHhhc--cCCCCcEEEeeecCceeeehhhcc-ccCc
Q 045118           16 TPDILGRLPNVRTFRISGDLSYYHSG-----------------VSKSLC--KLHKLECLKLVNKGKMWQLSRMIL-SEYK   75 (221)
Q Consensus        16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~-----------------~~~~l~--~l~~L~~L~l~~~~~~~~L~~Llp-~l~~   75 (221)
                      +|..++++++|++|+++++.  ..+.                 +|+.++  ++++|++|+++++.    +...+| .++.
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~--l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~----l~~~~p~~l~~  271 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSP--FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP----NLTKLPTFLKA  271 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCC--CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT----TCSSCCTTTTT
T ss_pred             CCHHHhcccCCCEEECcCCc--cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc----CCccChHHHhc
Confidence            66778888888888888886  4342                 788877  88888888888741    011145 5666


Q ss_pred             CCCCccEEEeeccc-CCC-CCchhhccC------CCCcEEEecCCccCCceeee--eCCCCCCcccEEecccccccc-ce
Q 045118           76 FPPSLTQLSLSNTE-LME-DPMPTLEKL------PHLEVLKLKQNSYLERKLAC--VGCSSFSQLKILHLKSMLWLE-EW  144 (221)
Q Consensus        76 ~~~~L~~L~l~~~~-~~~-~~~~~l~~l------~~L~~L~l~~~~~~~~~l~~--~~~~~~~~L~~L~L~~~~~l~-~~  144 (221)
                      + ++|++|++++|. +.. ..+..++.+      ++|++|++++|.+..  ++.  . ++.+++|+.|++++|. +. .+
T Consensus       272 l-~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~--ip~~~~-l~~l~~L~~L~L~~N~-l~g~i  346 (636)
T 4eco_A          272 L-PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT--FPVETS-LQKMKKLGMLECLYNQ-LEGKL  346 (636)
T ss_dssp             C-SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS--CCCHHH-HTTCTTCCEEECCSCC-CEEEC
T ss_pred             C-CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc--cCchhh-hccCCCCCEEeCcCCc-Cccch
Confidence            6 667777776665 543 223344443      666666666665552  444  3 4556666666666655 44 44


Q ss_pred             eeCCCCCCCccEEEecCCccccCcchhhccCCc-CcEEEccCC
Q 045118          145 TMGAGAMPKLESLILNPCAYLRKLPEELWCIKS-LCKLELHWP  186 (221)
Q Consensus       145 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~-L~~l~l~~~  186 (221)
                      + .++.+++|+.|++++| .+..+|..+..+++ |++|++.++
T Consensus       347 p-~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N  387 (636)
T 4eco_A          347 P-AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHN  387 (636)
T ss_dssp             C-CCEEEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSS
T ss_pred             h-hhCCCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCC
Confidence            4 4455555666666553 33455555555555 555555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.56  E-value=6.5e-15  Score=118.91  Aligned_cols=157  Identities=20%  Similarity=0.190  Sum_probs=93.3

Q ss_pred             CCCCccEEEEEecCCccccchhHhh--ccCCCCcEEEeeecCceeeehhhcc-ccCcC----CCCccEEEeecccCCCCC
Q 045118           22 RLPNVRTFRISGDLSYYHSGVSKSL--CKLHKLECLKLVNKGKMWQLSRMIL-SEYKF----PPSLTQLSLSNTELMEDP   94 (221)
Q Consensus        22 ~l~~Lr~L~l~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~----~~~L~~L~l~~~~~~~~~   94 (221)
                      ++++|++|+++++.  ..+.+|..+  ..+++|++|+++++    .+.. +| .++.+    +++|++|++++|.+...+
T Consensus        93 ~l~~L~~L~L~~n~--l~~~~~~~~~~~~l~~L~~L~Ls~N----~l~~-~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~  165 (312)
T 1wwl_A           93 GISGLQELTLENLE--VTGTAPPPLLEATGPDLNILNLRNV----SWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFS  165 (312)
T ss_dssp             TTSCCCEEEEEEEB--CBSCCCCCSSSCCSCCCSEEEEESC----BCSS-SSSHHHHHHTTCCTTCCEEEEESCSCCCCC
T ss_pred             CcCCccEEEccCCc--ccchhHHHHHHhcCCCccEEEccCC----CCcc-hhHHHHHHHHhhcCCCcEEEeeCCCCccch
Confidence            57777777777775  444556554  67777777777764    1222 12 22221    267777777777777666


Q ss_pred             chhhccCCCCcEEEecCCccCCc-eeeee-CCCCCCcccEEecccccccccee----eCCCCCCCccEEEecCCccccCc
Q 045118           95 MPTLEKLPHLEVLKLKQNSYLER-KLACV-GCSSFSQLKILHLKSMLWLEEWT----MGAGAMPKLESLILNPCAYLRKL  168 (221)
Q Consensus        95 ~~~l~~l~~L~~L~l~~~~~~~~-~l~~~-~~~~~~~L~~L~L~~~~~l~~~~----~~~~~l~~L~~L~l~~~~~l~~~  168 (221)
                      +..++.+++|++|++++|.+.+. .++.. ....+++|++|++++|. ++.++    ..+..+++|+.|++++|. +...
T Consensus       166 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~  243 (312)
T 1wwl_A          166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNS-LRDA  243 (312)
T ss_dssp             TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSC-CCSS
T ss_pred             HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCc-CCcc
Confidence            56677777777777777764331 11111 02567777777777776 55332    112345777777777743 3332


Q ss_pred             c--hhhccCCcCcEEEccCCC
Q 045118          169 P--EELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       169 ~--~~~~~l~~L~~l~l~~~~  187 (221)
                      +  ..+..+++|++|++.++.
T Consensus       244 ~~~~~~~~l~~L~~L~Ls~N~  264 (312)
T 1wwl_A          244 AGAPSCDWPSQLNSLNLSFTG  264 (312)
T ss_dssp             CCCSCCCCCTTCCEEECTTSC
T ss_pred             cchhhhhhcCCCCEEECCCCc
Confidence            2  234456777777777654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.56  E-value=9e-15  Score=132.60  Aligned_cols=158  Identities=17%  Similarity=0.202  Sum_probs=113.8

Q ss_pred             ChhhcC--CCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehh-hcc-cc-------CcCCCCccEEE
Q 045118           16 TPDILG--RLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSR-MIL-SE-------YKFPPSLTQLS   84 (221)
Q Consensus        16 ~~~~l~--~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~-Llp-~l-------~~~~~~L~~L~   84 (221)
                      +|..++  ++++|+.|+++.|.  ....+|..++++++|++|+++++..   +.. -+| .+       ..+ ++|+.|+
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~--l~~~iP~~l~~L~~L~~L~Ls~N~~---lsg~~iP~~i~~L~~~~~~l-~~L~~L~  554 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCP--NMTQLPDFLYDLPELQSLNIACNRG---ISAAQLKADWTRLADDEDTG-PKIQIFY  554 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCT--TCCSCCGGGGGCSSCCEEECTTCTT---SCHHHHHHHHHHHHHCTTTT-TTCCEEE
T ss_pred             CChhhhhccCCCCCEEECcCCC--CCccChHHHhCCCCCCEEECcCCCC---cccccchHHHHhhhhccccc-CCccEEE
Confidence            677777  99999999999997  6788899999999999999988520   121 133 22       334 5888888


Q ss_pred             eecccCCCCCch--hhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCC-ccEEEecC
Q 045118           85 LSNTELMEDPMP--TLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPK-LESLILNP  161 (221)
Q Consensus        85 l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~-L~~L~l~~  161 (221)
                      +++|.+...+ .  .++.+++|+.|++++|.+.  .++ . ++.+++|+.|++++|. +..++..+..+++ |+.|++++
T Consensus       555 Ls~N~L~~ip-~~~~l~~L~~L~~L~Ls~N~l~--~lp-~-~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~  628 (876)
T 4ecn_A          555 MGYNNLEEFP-ASASLQKMVKLGLLDCVHNKVR--HLE-A-FGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSH  628 (876)
T ss_dssp             CCSSCCCBCC-CHHHHTTCTTCCEEECTTSCCC--BCC-C-CCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCS
T ss_pred             eeCCcCCccC-ChhhhhcCCCCCEEECCCCCcc--cch-h-hcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcC
Confidence            8888888444 4  6888888888888888776  255 5 7778888888888877 6677766777777 88888887


Q ss_pred             CccccCcchhhccCCc--CcEEEccCC
Q 045118          162 CAYLRKLPEELWCIKS--LCKLELHWP  186 (221)
Q Consensus       162 ~~~l~~~~~~~~~l~~--L~~l~l~~~  186 (221)
                      |. +..+|..+...+.  |++|++.++
T Consensus       629 N~-L~~lp~~~~~~~~~~L~~L~Ls~N  654 (876)
T 4ecn_A          629 NK-LKYIPNIFNAKSVYVMGSVDFSYN  654 (876)
T ss_dssp             SC-CCSCCSCCCTTCSSCEEEEECCSS
T ss_pred             CC-CCcCchhhhccccCCCCEEECcCC
Confidence            44 4566654443332  555555544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.55  E-value=6.2e-15  Score=133.67  Aligned_cols=159  Identities=16%  Similarity=0.253  Sum_probs=131.4

Q ss_pred             ChhhcCCCCCccEEEEEecCCcccc-----------------chhHhhc--cCCCCcEEEeeecCceeeehhhcc-ccCc
Q 045118           16 TPDILGRLPNVRTFRISGDLSYYHS-----------------GVSKSLC--KLHKLECLKLVNKGKMWQLSRMIL-SEYK   75 (221)
Q Consensus        16 ~~~~l~~l~~Lr~L~l~~~~~~~~~-----------------~~~~~l~--~l~~L~~L~l~~~~~~~~L~~Llp-~l~~   75 (221)
                      +|..++++++|+.|+++++.  ..+                 .+|+.++  ++++|++|+++++.    +...+| .++.
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~--Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~----l~~~iP~~l~~  513 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSP--FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP----NMTQLPDFLYD  513 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCC--CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT----TCCSCCGGGGG
T ss_pred             hhHHHhcCCCCCEEECcCCc--CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC----CCccChHHHhC
Confidence            67889999999999999996  444                 3888888  99999999999841    111167 7899


Q ss_pred             CCCCccEEEeeccc-CCC-CCchhhccC-------CCCcEEEecCCccCCceeee--eCCCCCCcccEEeccccccccce
Q 045118           76 FPPSLTQLSLSNTE-LME-DPMPTLEKL-------PHLEVLKLKQNSYLERKLAC--VGCSSFSQLKILHLKSMLWLEEW  144 (221)
Q Consensus        76 ~~~~L~~L~l~~~~-~~~-~~~~~l~~l-------~~L~~L~l~~~~~~~~~l~~--~~~~~~~~L~~L~L~~~~~l~~~  144 (221)
                      + ++|+.|++++|. +.. ..+..++.+       ++|+.|++++|.+..  +|.  . +..+++|+.|++++|. +..+
T Consensus       514 L-~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~--ip~~~~-l~~L~~L~~L~Ls~N~-l~~l  588 (876)
T 4ecn_A          514 L-PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE--FPASAS-LQKMVKLGLLDCVHNK-VRHL  588 (876)
T ss_dssp             C-SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB--CCCHHH-HTTCTTCCEEECTTSC-CCBC
T ss_pred             C-CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc--cCChhh-hhcCCCCCEEECCCCC-cccc
Confidence            9 999999999998 764 233445444       599999999998873  776  5 7789999999999998 7788


Q ss_pred             eeCCCCCCCccEEEecCCccccCcchhhccCCc-CcEEEccCCC
Q 045118          145 TMGAGAMPKLESLILNPCAYLRKLPEELWCIKS-LCKLELHWPQ  187 (221)
Q Consensus       145 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~-L~~l~l~~~~  187 (221)
                      | .++.+++|+.|++++|. +..+|..+..+++ |++|++.++.
T Consensus       589 p-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~  630 (876)
T 4ecn_A          589 E-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK  630 (876)
T ss_dssp             C-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC
T ss_pred             h-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCC
Confidence            8 88889999999999954 5689988999999 9999999875

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.54  E-value=1.8e-14  Score=127.02  Aligned_cols=19  Identities=11%  Similarity=0.263  Sum_probs=9.1

Q ss_pred             ChhhcCCCCC-ccEEEEEec
Q 045118           16 TPDILGRLPN-VRTFRISGD   34 (221)
Q Consensus        16 ~~~~l~~l~~-Lr~L~l~~~   34 (221)
                      +|..++++++ |++|+++++
T Consensus       368 lp~~l~~l~~~L~~L~Ls~N  387 (636)
T 4eco_A          368 IPANFCGFTEQVENLSFAHN  387 (636)
T ss_dssp             CCTTSEEECTTCCEEECCSS
T ss_pred             ccHhhhhhcccCcEEEccCC
Confidence            3344444444 555555544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.54  E-value=1.5e-14  Score=124.98  Aligned_cols=158  Identities=18%  Similarity=0.157  Sum_probs=69.0

Q ss_pred             hhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCC-c
Q 045118           18 DILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDP-M   95 (221)
Q Consensus        18 ~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~-~   95 (221)
                      ..++++++|++|+++++.  .....+..+.++++|++|+++++    .+..+.| +++.+ ++|++|++++|.+...+ +
T Consensus        44 ~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~Ls~n----~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~  116 (549)
T 2z81_A           44 GDLRACANLQVLILKSSR--INTIEGDAFYSLGSLEHLDLSDN----HLSSLSSSWFGPL-SSLKYLNLMGNPYQTLGVT  116 (549)
T ss_dssp             STTSSCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTS----CCCSCCHHHHTTC-TTCCEEECTTCCCSSSCSS
T ss_pred             hhhhcCCcccEEECCCCC--cCccChhhccccccCCEEECCCC----ccCccCHHHhccC-CCCcEEECCCCcccccchh
Confidence            344455555555555543  22333344455555555555442    1122112 34444 55555555555544321 1


Q ss_pred             hhhccCCCCcEEEecCCccCCceee-eeCCCCCCcccEEeccccccccc-eeeCCCCCCCccEEEecCCccccCcchh-h
Q 045118           96 PTLEKLPHLEVLKLKQNSYLERKLA-CVGCSSFSQLKILHLKSMLWLEE-WTMGAGAMPKLESLILNPCAYLRKLPEE-L  172 (221)
Q Consensus        96 ~~l~~l~~L~~L~l~~~~~~~~~l~-~~~~~~~~~L~~L~L~~~~~l~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~  172 (221)
                      ..++.+++|++|++++|...+. ++ .. +..+++|++|+++++. +.. .+..++.+++|++|++.++ ....+|.. +
T Consensus       117 ~~~~~l~~L~~L~L~~n~~~~~-~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~  192 (549)
T 2z81_A          117 SLFPNLTNLQTLRIGNVETFSE-IRRID-FAGLTSLNELEIKALS-LRNYQSQSLKSIRDIHHLTLHLS-ESAFLLEIFA  192 (549)
T ss_dssp             CSCTTCTTCCEEEEEESSSCCE-ECTTT-TTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECS-BSTTHHHHHH
T ss_pred             hhhhccCCccEEECCCCccccc-cCHhh-hhcccccCeeeccCCc-ccccChhhhhccccCceEecccC-cccccchhhH
Confidence            2344455555555544442221 21 12 3344555555555444 332 2333444555555555542 22333332 2


Q ss_pred             ccCCcCcEEEccCC
Q 045118          173 WCIKSLCKLELHWP  186 (221)
Q Consensus       173 ~~l~~L~~l~l~~~  186 (221)
                      ..+++|+++++.++
T Consensus       193 ~~l~~L~~L~L~~n  206 (549)
T 2z81_A          193 DILSSVRYLELRDT  206 (549)
T ss_dssp             HSTTTBSEEEEESC
T ss_pred             hhcccccEEEccCC
Confidence            34566666666554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.54  E-value=1.3e-14  Score=117.41  Aligned_cols=131  Identities=12%  Similarity=0.043  Sum_probs=97.0

Q ss_pred             hhccCCCCcEEEeeecCceeeehhhcc-cc-CcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeee
Q 045118           45 SLCKLHKLECLKLVNKGKMWQLSRMIL-SE-YKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACV  122 (221)
Q Consensus        45 ~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l-~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~  122 (221)
                      .+..+++|++|+++++    .+..+.+ .+ ..+ ++|++|++++|.+...  +....+++|++|++++|.+..  ++..
T Consensus       139 ~~~~l~~L~~L~Ls~N----~l~~~~~~~~~~~l-~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~--l~~~  209 (317)
T 3o53_A          139 DEGCRSRVQYLDLKLN----EIDTVNFAELAASS-DTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF--MGPE  209 (317)
T ss_dssp             CTGGGSSEEEEECTTS----CCCEEEGGGGGGGT-TTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE--ECGG
T ss_pred             hhhccCCCCEEECCCC----CCCcccHHHHhhcc-CcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCc--chhh
Confidence            4444555555555542    1122122 33 467 8999999999998755  344469999999999998765  5545


Q ss_pred             CCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccc-cCcchhhccCCcCcEEEccCC
Q 045118          123 GCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYL-RKLPEELWCIKSLCKLELHWP  186 (221)
Q Consensus       123 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l-~~~~~~~~~l~~L~~l~l~~~  186 (221)
                       +..+++|+.|++++|. ++.++..+..+++|+.|++++|+.. ..+|..+..+++|+.+++.++
T Consensus       210 -~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          210 -FQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             -GGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             -hcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence             6678999999999998 8889888888999999999997654 356667888888888877643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.54  E-value=2.2e-14  Score=115.62  Aligned_cols=174  Identities=19%  Similarity=0.181  Sum_probs=93.8

Q ss_pred             CCcceeceecCC--CCChhhc--CCCCCccEEEEEecCCccccch---h-HhhccCCCCcEEEeeecCceeeehhhcc-c
Q 045118            2 KNLIFISALHPS--SCTPDIL--GRLPNVRTFRISGDLSYYHSGV---S-KSLCKLHKLECLKLVNKGKMWQLSRMIL-S   72 (221)
Q Consensus         2 ~~L~~L~~~~~~--~~~~~~l--~~l~~Lr~L~l~~~~~~~~~~~---~-~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~   72 (221)
                      ++|++|...+..  +..+..+  +++++|++|++++|.  .....   + ..+..+++|++|+++++    .+..+.| .
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~--i~~~~~~~~~~~~~~~~~L~~L~Ls~n----~l~~~~~~~  164 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS--WATGRSWLAELQQWLKPGLKVLSIAQA----HSPAFSCEQ  164 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC--CSSTTSSHHHHHTTBCSCCCEEEEECC----SSCCCCTTS
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc--ccchhhhhHHHHhhhccCCCEEEeeCC----CcchhhHHH
Confidence            356676643332  2355555  778888888888875  32221   1 34456788888888774    1122122 4


Q ss_pred             cCcCCCCccEEEeecccCCCC---C-chhhccCCCCcEEEecCCccCCce-eee-eCCCCCCcccEEeccccccccce-e
Q 045118           73 EYKFPPSLTQLSLSNTELMED---P-MPTLEKLPHLEVLKLKQNSYLERK-LAC-VGCSSFSQLKILHLKSMLWLEEW-T  145 (221)
Q Consensus        73 l~~~~~~L~~L~l~~~~~~~~---~-~~~l~~l~~L~~L~l~~~~~~~~~-l~~-~~~~~~~~L~~L~L~~~~~l~~~-~  145 (221)
                      ++.+ ++|++|++++|.+...   + ...++.+++|++|++++|.+.... .+. . ...+++|++|++++|. +.+. |
T Consensus       165 ~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l-~~~l~~L~~L~Ls~N~-l~~~~p  241 (310)
T 4glp_A          165 VRAF-PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL-AAAGVQPHSLDLSHNS-LRATVN  241 (310)
T ss_dssp             CCCC-TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH-HHHTCCCSSEECTTSC-CCCCCC
T ss_pred             hccC-CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH-HhcCCCCCEEECCCCC-CCccch
Confidence            5566 6677777777665321   0 112245666666666666553210 000 1 1235666666666665 4444 3


Q ss_pred             eCCCCC---CCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118          146 MGAGAM---PKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       146 ~~~~~l---~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      ..++.+   ++|++|++++ +.++.+|..+.  ++|++|++..+.
T Consensus       242 ~~~~~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~N~  283 (310)
T 4glp_A          242 PSAPRCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSSNR  283 (310)
T ss_dssp             SCCSSCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCSCC
T ss_pred             hhHHhccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCCCc
Confidence            333333   5666666665 34455555442  566666666554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.54  E-value=2.1e-14  Score=117.72  Aligned_cols=154  Identities=23%  Similarity=0.248  Sum_probs=124.1

Q ss_pred             CCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhhccCC
Q 045118           24 PNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKLP  102 (221)
Q Consensus        24 ~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~  102 (221)
                      ++|++|+++++.  .....+..+.++++|++|+++++    .+..+.| .+..+ ++|++|++++|.+...+...++.++
T Consensus        52 ~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~  124 (353)
T 2z80_A           52 EAVKSLDLSNNR--ITYISNSDLQRCVNLQALVLTSN----GINTIEEDSFSSL-GSLEHLDLSYNYLSNLSSSWFKPLS  124 (353)
T ss_dssp             TTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTS----CCCEECTTTTTTC-TTCCEEECCSSCCSSCCHHHHTTCT
T ss_pred             ccCcEEECCCCc--CcccCHHHhccCCCCCEEECCCC----ccCccCHhhcCCC-CCCCEEECCCCcCCcCCHhHhCCCc
Confidence            589999999996  44433447899999999999874    2233234 68888 9999999999999987766689999


Q ss_pred             CCcEEEecCCccCCceeee--eCCCCCCcccEEecccccccccee-eCCCCCCCccEEEecCCccccCcchhhccCCcCc
Q 045118          103 HLEVLKLKQNSYLERKLAC--VGCSSFSQLKILHLKSMLWLEEWT-MGAGAMPKLESLILNPCAYLRKLPEELWCIKSLC  179 (221)
Q Consensus       103 ~L~~L~l~~~~~~~~~l~~--~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~  179 (221)
                      +|++|++++|.+..  ++.  . +..+++|+.|++++|..+..++ ..++.+++|++|++++|......|..+..+++|+
T Consensus       125 ~L~~L~L~~n~l~~--l~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  201 (353)
T 2z80_A          125 SLTFLNLLGNPYKT--LGETSL-FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS  201 (353)
T ss_dssp             TCSEEECTTCCCSS--SCSSCS-CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred             cCCEEECCCCCCcc--cCchhh-hccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCC
Confidence            99999999998775  443  4 6679999999999986577774 4577899999999999654334477889999999


Q ss_pred             EEEccCCC
Q 045118          180 KLELHWPQ  187 (221)
Q Consensus       180 ~l~l~~~~  187 (221)
                      +|++.++.
T Consensus       202 ~L~l~~n~  209 (353)
T 2z80_A          202 HLILHMKQ  209 (353)
T ss_dssp             EEEEECSC
T ss_pred             eecCCCCc
Confidence            99999876

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.53  E-value=2.6e-15  Score=122.00  Aligned_cols=164  Identities=18%  Similarity=0.172  Sum_probs=103.3

Q ss_pred             ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehh-hcc-ccCcCCCCccEEEeecc-cCCC
Q 045118           16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSR-MIL-SEYKFPPSLTQLSLSNT-ELME   92 (221)
Q Consensus        16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~-Llp-~l~~~~~~L~~L~l~~~-~~~~   92 (221)
                      .+..++++++|++|+++++.  ..+..+..+.++++|++|+++++..   +.. -++ .+..+ ++|++|++++| .+..
T Consensus       110 ~~~~~~~~~~L~~L~L~~~~--l~~~~~~~l~~~~~L~~L~L~~~~~---l~~~~l~~~~~~~-~~L~~L~l~~~~~l~~  183 (336)
T 2ast_B          110 LHGILSQCSKLQNLSLEGLR--LSDPIVNTLAKNSNLVRLNLSGCSG---FSEFALQTLLSSC-SRLDELNLSWCFDFTE  183 (336)
T ss_dssp             HHHHHTTBCCCSEEECTTCB--CCHHHHHHHTTCTTCSEEECTTCBS---CCHHHHHHHHHHC-TTCCEEECCCCTTCCH
T ss_pred             HHHHHhhCCCCCEEeCcCcc--cCHHHHHHHhcCCCCCEEECCCCCC---CCHHHHHHHHhcC-CCCCEEcCCCCCCcCh
Confidence            33446666677777766664  4445566666677777777765310   010 033 35566 78888888888 6654


Q ss_pred             CC-chhhccCC-CCcEEEecCCc--cCCceeeeeCCCCCCcccEEecccccccc-ceeeCCCCCCCccEEEecCCccccC
Q 045118           93 DP-MPTLEKLP-HLEVLKLKQNS--YLERKLACVGCSSFSQLKILHLKSMLWLE-EWTMGAGAMPKLESLILNPCAYLRK  167 (221)
Q Consensus        93 ~~-~~~l~~l~-~L~~L~l~~~~--~~~~~l~~~~~~~~~~L~~L~L~~~~~l~-~~~~~~~~l~~L~~L~l~~~~~l~~  167 (221)
                      .. ...++.++ +|++|++++|.  +....++.. ...+++|+.|++++|..++ ..+..++.+++|++|++++|..+..
T Consensus       184 ~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~  262 (336)
T 2ast_B          184 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP  262 (336)
T ss_dssp             HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred             HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH
Confidence            32 33466788 88888887773  332334444 4567888888888877433 3344566778888888888763332


Q ss_pred             c-chhhccCCcCcEEEccCC
Q 045118          168 L-PEELWCIKSLCKLELHWP  186 (221)
Q Consensus       168 ~-~~~~~~l~~L~~l~l~~~  186 (221)
                      . ...+..+++|++|++.+|
T Consensus       263 ~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          263 ETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGGGGGGGCTTCCEEECTTS
T ss_pred             HHHHHHhcCCCCCEEeccCc
Confidence            2 124677888888888876

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.53  E-value=4.1e-14  Score=122.63  Aligned_cols=175  Identities=16%  Similarity=0.176  Sum_probs=121.4

Q ss_pred             CcceeceecCCCC-ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCce--------e----eehhh
Q 045118            3 NLIFISALHPSSC-TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKM--------W----QLSRM   69 (221)
Q Consensus         3 ~L~~L~~~~~~~~-~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--------~----~L~~L   69 (221)
                      +|++|........ ++.  +.+++|+.|+++++.  .....+.  ..+++|++|+++++.-.        +    +|+.+
T Consensus       305 ~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~--~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L  378 (570)
T 2z63_A          305 GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNK--GGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL  378 (570)
T ss_dssp             CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCB--SCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEE
T ss_pred             CccEEeeccCcccccCc--ccccccCEEeCcCCc--ccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEE
Confidence            4556654333222 333  578999999999986  3333332  78999999999874210        0    23333


Q ss_pred             ---------cc-ccCcCCCCccEEEeecccCCCCCc-hhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEecccc
Q 045118           70 ---------IL-SEYKFPPSLTQLSLSNTELMEDPM-PTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSM  138 (221)
Q Consensus        70 ---------lp-~l~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~  138 (221)
                               +| .+..+ ++|+.|++++|.+...++ ..++.+++|++|++++|.+... .+.. +..+++|+.|++.+|
T Consensus       379 ~l~~n~l~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~-~~~l~~L~~L~l~~n  455 (570)
T 2z63_A          379 DLSFNGVITMSSNFLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGI-FNGLSSLEVLKMAGN  455 (570)
T ss_dssp             ECCSCSEEEEEEEEETC-TTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC-CTTT-TTTCTTCCEEECTTC
T ss_pred             ECCCCcccccccccccc-CCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc-chhh-hhcCCcCcEEECcCC
Confidence                     22 45666 788888888888765443 4577888899999988775442 3334 567889999999988


Q ss_pred             cccc--ceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118          139 LWLE--EWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       139 ~~l~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      . +.  .++..++.+++|+.|++++|.-....|..+..+++|++|++.++.
T Consensus       456 ~-l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  505 (570)
T 2z63_A          456 S-FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ  505 (570)
T ss_dssp             E-EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             c-CccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence            7 44  467778889999999999865333337778889999999998864

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.53  E-value=1.5e-13  Score=116.69  Aligned_cols=36  Identities=33%  Similarity=0.433  Sum_probs=17.7

Q ss_pred             cCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeee
Q 045118           20 LGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVN   59 (221)
Q Consensus        20 l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~   59 (221)
                      ++++++|++|+++++.   ...+ +.+.++++|++|++++
T Consensus       173 ~~~l~~L~~L~l~~n~---l~~~-~~l~~l~~L~~L~l~~  208 (466)
T 1o6v_A          173 LANLTTLERLDISSNK---VSDI-SVLAKLTNLESLIATN  208 (466)
T ss_dssp             GTTCTTCCEEECCSSC---CCCC-GGGGGCTTCSEEECCS
T ss_pred             hccCCCCCEEECcCCc---CCCC-hhhccCCCCCEEEecC
Confidence            5556666666665553   1111 2244455555555544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.52  E-value=3e-14  Score=129.34  Aligned_cols=176  Identities=13%  Similarity=0.058  Sum_probs=110.9

Q ss_pred             CCcceeceecCCCC--ChhhcCCCCCccEEEEEecCCccccch-hHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCC
Q 045118            2 KNLIFISALHPSSC--TPDILGRLPNVRTFRISGDLSYYHSGV-SKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFP   77 (221)
Q Consensus         2 ~~L~~L~~~~~~~~--~~~~l~~l~~Lr~L~l~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~   77 (221)
                      +++++|..-.....  .+..++++++|++|+++++.  ....+ +..+.++++|++|+++++    .+..+.| +++.+ 
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~--~~~~i~~~~f~~L~~L~~L~Ls~N----~l~~~~p~~~~~l-   96 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY--TPLTIDKEAFRNLPNLRILDLGSS----KIYFLHPDAFQGL-   96 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTC--CCCEECTTTTSSCTTCCEEECTTC----CCCEECTTSSCSC-
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCC--CccccCHHHhcCCCCCCEEECCCC----cCcccCHhHccCC-
Confidence            45666654333222  45667788888888888774  33444 567788888888888764    2233235 67777 


Q ss_pred             CCccEEEeecccCCCCCch--hhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeCCCCC--C
Q 045118           78 PSLTQLSLSNTELMEDPMP--TLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMGAGAM--P  152 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l--~  152 (221)
                      ++|++|++++|.+....+.  .++.+++|++|++++|.+.....+.. ++.+++|+.|+++++. +... +..++.+  +
T Consensus        97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~L~~L~~L~Ls~N~-i~~~~~~~l~~l~~~  174 (844)
T 3j0a_A           97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS-FGKLNSLKSIDFSSNQ-IFLVCEHELEPLQGK  174 (844)
T ss_dssp             SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGG-GGTCSSCCEEEEESSC-CCCCCSGGGHHHHHC
T ss_pred             cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchh-HhhCCCCCEEECCCCc-CCeeCHHHcccccCC
Confidence            7888888888877653333  37778888888888777665433334 5677888888887766 4333 2333333  6


Q ss_pred             CccEEEecCCccccCcchhhccCCc------CcEEEccCC
Q 045118          153 KLESLILNPCAYLRKLPEELWCIKS------LCKLELHWP  186 (221)
Q Consensus       153 ~L~~L~l~~~~~l~~~~~~~~~l~~------L~~l~l~~~  186 (221)
                      +|+.|++++|......|..++.+++      |++|++.++
T Consensus       175 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  214 (844)
T 3j0a_A          175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN  214 (844)
T ss_dssp             SSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred             ccceEECCCCccccccccchhhcCCccccCceeEEecCCC
Confidence            6777777775544444544454444      788888766

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.52  E-value=2.1e-14  Score=124.01  Aligned_cols=156  Identities=18%  Similarity=0.230  Sum_probs=113.5

Q ss_pred             CCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhhccCC
Q 045118           24 PNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKLP  102 (221)
Q Consensus        24 ~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~  102 (221)
                      ++|++|+++++.  .....+..+.++++|++|+++++    .+..+.| .+..+ ++|++|++++|.+...++..++.++
T Consensus        26 ~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n----~i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~   98 (549)
T 2z81_A           26 AAMKSLDLSFNK--ITYIGHGDLRACANLQVLILKSS----RINTIEGDAFYSL-GSLEHLDLSDNHLSSLSSSWFGPLS   98 (549)
T ss_dssp             TTCCEEECCSSC--CCEECSSTTSSCTTCCEEECTTS----CCCEECTTTTTTC-TTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred             CCccEEECcCCc--cCccChhhhhcCCcccEEECCCC----CcCccChhhcccc-ccCCEEECCCCccCccCHHHhccCC
Confidence            678888888886  44555667888888888888874    2233233 67777 8888888888888877766688888


Q ss_pred             CCcEEEecCCccCCceeeeeCCCCCCcccEEecccccccccee-eCCCCCCCccEEEecCCccccCcchhhccCCcCcEE
Q 045118          103 HLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWT-MGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKL  181 (221)
Q Consensus       103 ~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l  181 (221)
                      +|++|++++|.+.....+.. ++.+++|++|++++|..+..++ ..++.+++|++|++++|.--...|..++.+++|+++
T Consensus        99 ~L~~L~Ls~n~l~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  177 (549)
T 2z81_A           99 SLKYLNLMGNPYQTLGVTSL-FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL  177 (549)
T ss_dssp             TCCEEECTTCCCSSSCSSCS-CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred             CCcEEECCCCcccccchhhh-hhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceE
Confidence            88888888887765334444 6678888888888877556665 356778888888888865444456777888888888


Q ss_pred             EccCCC
Q 045118          182 ELHWPQ  187 (221)
Q Consensus       182 ~l~~~~  187 (221)
                      ++..+.
T Consensus       178 ~l~~n~  183 (549)
T 2z81_A          178 TLHLSE  183 (549)
T ss_dssp             EEECSB
T ss_pred             ecccCc
Confidence            887654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.51  E-value=1.7e-13  Score=116.41  Aligned_cols=171  Identities=20%  Similarity=0.250  Sum_probs=93.0

Q ss_pred             CCcceeceecCCCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCce----e----eehhh----
Q 045118            2 KNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKM----W----QLSRM----   69 (221)
Q Consensus         2 ~~L~~L~~~~~~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~----~----~L~~L----   69 (221)
                      ++|++|..-.........++.+++|++|+++++.   ...+ +.+..+++|++|+++++.-.    +    +|+.|    
T Consensus       199 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~---l~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~  274 (466)
T 1o6v_A          199 TNLESLIATNNQISDITPLGILTNLDELSLNGNQ---LKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGA  274 (466)
T ss_dssp             TTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSC---CCCC-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred             CCCCEEEecCCcccccccccccCCCCEEECCCCC---cccc-hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCC
Confidence            4555555332222222225667777777777664   2222 34556666666666653100    0    11111    


Q ss_pred             -----ccccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce
Q 045118           70 -----ILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW  144 (221)
Q Consensus        70 -----lp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~  144 (221)
                           ++.+..+ ++|+.|++++|.+...+  .++.+++|+.|++++|.+.+.  . . ...+++|+.|++++|. +.++
T Consensus       275 n~l~~~~~~~~l-~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~--~-~-~~~l~~L~~L~l~~n~-l~~~  346 (466)
T 1o6v_A          275 NQISNISPLAGL-TALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDI--S-P-VSSLTKLQRLFFYNNK-VSDV  346 (466)
T ss_dssp             SCCCCCGGGTTC-TTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCC--G-G-GGGCTTCCEEECCSSC-CCCC
T ss_pred             CccCccccccCC-CccCeEEcCCCcccCch--hhcCCCCCCEEECcCCcCCCc--h-h-hccCccCCEeECCCCc-cCCc
Confidence                 2234555 66666666666665433  355666667777766665442  1 1 3356677777777665 5554


Q ss_pred             eeCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118          145 TMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       145 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      + .+..+++|+.|++++|. +..++. +..+++|+++++.+++
T Consensus       347 ~-~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          347 S-SLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQA  386 (466)
T ss_dssp             G-GGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCEE
T ss_pred             h-hhccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCCc
Confidence            2 45567777777777654 333332 6677777777776653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.51  E-value=1.3e-13  Score=122.01  Aligned_cols=159  Identities=18%  Similarity=0.150  Sum_probs=113.0

Q ss_pred             ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCC
Q 045118           16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMED   93 (221)
Q Consensus        16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~   93 (221)
                      .+..++++++|++|+++++.  .....|..++++++|++|+++++    .+.. +|  .++.+ ++|++|++++|.+...
T Consensus        41 ~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n----~l~~-l~~~~~~~l-~~L~~L~L~~n~l~~~  112 (680)
T 1ziw_A           41 PAANFTRYSQLTSLDVGFNT--ISKLEPELCQKLPMLKVLNLQHN----ELSQ-LSDKTFAFC-TNLTELHLMSNSIQKI  112 (680)
T ss_dssp             CGGGGGGGTTCSEEECCSSC--CCCCCTTHHHHCTTCCEEECCSS----CCCC-CCTTTTTTC-TTCSEEECCSSCCCCC
T ss_pred             CHHHHhCCCcCcEEECCCCc--cCccCHHHHhcccCcCEEECCCC----ccCc-cChhhhccC-CCCCEEECCCCccCcc
Confidence            44558888888888888876  55556777888888888888874    2233 44  47778 8999999999988877


Q ss_pred             CchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC---CCCCCCccEEEecCCccccCc-c
Q 045118           94 PMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG---AGAMPKLESLILNPCAYLRKL-P  169 (221)
Q Consensus        94 ~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~---~~~l~~L~~L~l~~~~~l~~~-~  169 (221)
                      ++..++.+++|++|++++|.+... .+.. +..+++|++|+++++. ++.++..   ...+++|++|++++|. +..+ |
T Consensus       113 ~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~  188 (680)
T 1ziw_A          113 KNNPFVKQKNLITLDLSHNGLSST-KLGT-QVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQ-IKEFSP  188 (680)
T ss_dssp             CSCTTTTCTTCCEEECCSSCCSCC-CCCS-SSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCC-CCCBCT
T ss_pred             ChhHccccCCCCEEECCCCccccc-Cchh-hcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCc-ccccCh
Confidence            666788899999999988877653 2333 5678899999998877 5555322   2245788999998854 4433 4


Q ss_pred             hhhccCCcCcEEEccCC
Q 045118          170 EELWCIKSLCKLELHWP  186 (221)
Q Consensus       170 ~~~~~l~~L~~l~l~~~  186 (221)
                      ..+..+++|+++++..+
T Consensus       189 ~~~~~l~~L~~L~l~~~  205 (680)
T 1ziw_A          189 GCFHAIGRLFGLFLNNV  205 (680)
T ss_dssp             TGGGGSSEECEEECTTC
T ss_pred             hhhhhhhhhhhhhcccc
Confidence            45666666666665544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.50  E-value=2.2e-13  Score=115.63  Aligned_cols=163  Identities=17%  Similarity=0.135  Sum_probs=84.8

Q ss_pred             CCcceeceecCCCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCcc
Q 045118            2 KNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLT   81 (221)
Q Consensus         2 ~~L~~L~~~~~~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~   81 (221)
                      ++|++|..-.......++++.+++|++|+++++.   ...++  ++.+++|++|+++++    .+.. +| ++.+ ++|+
T Consensus        42 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~---l~~~~--~~~l~~L~~L~Ls~N----~l~~-~~-~~~l-~~L~  109 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNN---ITTLD--LSQNTNLTYLACDSN----KLTN-LD-VTPL-TKLT  109 (457)
T ss_dssp             TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSC---CSCCC--CTTCTTCSEEECCSS----CCSC-CC-CTTC-TTCC
T ss_pred             CCCCEEEccCCCcccChhhcccCCCCEEEccCCc---CCeEc--cccCCCCCEEECcCC----CCce-ee-cCCC-CcCC
Confidence            4555555333222222357777888888887775   22233  677777777777763    1122 22 4455 5666


Q ss_pred             EEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeee-------------------CCCCCCcccEEecccccccc
Q 045118           82 QLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACV-------------------GCSSFSQLKILHLKSMLWLE  142 (221)
Q Consensus        82 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~-------------------~~~~~~~L~~L~L~~~~~l~  142 (221)
                      +|++++|.+...+   ++.+++|++|++++|.+.+  ++..                   +...+++|+.|+++++. ++
T Consensus       110 ~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~--l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~-l~  183 (457)
T 3bz5_A          110 YLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTE--IDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNK-IT  183 (457)
T ss_dssp             EEECCSSCCSCCC---CTTCTTCCEEECTTSCCSC--CCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSC-CC
T ss_pred             EEECCCCcCCeec---CCCCCcCCEEECCCCccce--eccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCc-cc
Confidence            6666666555432   4555666666665555443  1110                   02234444444444444 44


Q ss_pred             ceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118          143 EWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       143 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      .++  ++.+++|+.|++++| .++.++  ++.+++|++|++.++.
T Consensus       184 ~l~--l~~l~~L~~L~l~~N-~l~~~~--l~~l~~L~~L~Ls~N~  223 (457)
T 3bz5_A          184 ELD--VSQNKLLNRLNCDTN-NITKLD--LNQNIQLTFLDCSSNK  223 (457)
T ss_dssp             CCC--CTTCTTCCEEECCSS-CCSCCC--CTTCTTCSEEECCSSC
T ss_pred             eec--cccCCCCCEEECcCC-cCCeec--cccCCCCCEEECcCCc
Confidence            433  344555555555552 233332  4556666666666543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.50  E-value=2.6e-13  Score=120.13  Aligned_cols=166  Identities=22%  Similarity=0.198  Sum_probs=111.4

Q ss_pred             ChhhcCCCCCccEEEEEecCCccccchh-HhhccCCCCcEEEeeecCc------ee----eehhh------------cc-
Q 045118           16 TPDILGRLPNVRTFRISGDLSYYHSGVS-KSLCKLHKLECLKLVNKGK------MW----QLSRM------------IL-   71 (221)
Q Consensus        16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~------~~----~L~~L------------lp-   71 (221)
                      .+..++.+++|+.|+++.+.  ..+.++ ..+.++++|++|+++++.-      .+    +|+.+            +| 
T Consensus       397 ~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~  474 (680)
T 1ziw_A          397 ESDAFSWLGHLEVLDLGLNE--IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS  474 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSSC--CEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSC
T ss_pred             ChhhhhCCCCCCEEeCCCCc--CccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCc
Confidence            45667778888888888775  444444 5667777777777766310      00    11111            34 


Q ss_pred             ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCce-------eeeeCCCCCCcccEEeccccccccce
Q 045118           72 SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERK-------LACVGCSSFSQLKILHLKSMLWLEEW  144 (221)
Q Consensus        72 ~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-------l~~~~~~~~~~L~~L~L~~~~~l~~~  144 (221)
                      .+..+ ++|+.|++++|.+...+...++.+++|++|++++|.+....       .... +..+++|+.|+++++. ++.+
T Consensus       475 ~~~~l-~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~N~-l~~i  551 (680)
T 1ziw_A          475 PFQPL-RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYF-LKGLSHLHILNLESNG-FDEI  551 (680)
T ss_dssp             TTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCT-TTTCTTCCEEECCSSC-CCCC
T ss_pred             ccccC-CCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchh-hcCCCCCCEEECCCCC-CCCC
Confidence            56677 88899999988888777667888888899998888765310       0112 4567788888888876 6666


Q ss_pred             ee-CCCCCCCccEEEecCCccccCcchh-hccCCcCcEEEccCCC
Q 045118          145 TM-GAGAMPKLESLILNPCAYLRKLPEE-LWCIKSLCKLELHWPQ  187 (221)
Q Consensus       145 ~~-~~~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~l~l~~~~  187 (221)
                      +. .++.+++|+.|++++ +.++.+|.. +..+++|++|++.++.
T Consensus       552 ~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N~  595 (680)
T 1ziw_A          552 PVEVFKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKNL  595 (680)
T ss_dssp             CTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             CHHHcccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCCc
Confidence            54 356778888888876 456666654 4677777777777653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.50  E-value=3.8e-15  Score=121.03  Aligned_cols=164  Identities=21%  Similarity=0.191  Sum_probs=124.3

Q ss_pred             ChhhcCCCCCccEEEEEecCCccccc-hhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecc-cCCC
Q 045118           16 TPDILGRLPNVRTFRISGDLSYYHSG-VSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNT-ELME   92 (221)
Q Consensus        16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~-~~~~   92 (221)
                      .+..+..+++|++|+++++.  .... ++..+..+++|++|+++++.    +....+ .++.+ ++|++|++++| .+..
T Consensus        85 ~~~~~~~~~~L~~L~L~~~~--l~~~~~~~~~~~~~~L~~L~L~~~~----l~~~~~~~l~~~-~~L~~L~L~~~~~l~~  157 (336)
T 2ast_B           85 PLAEHFSPFRVQHMDLSNSV--IEVSTLHGILSQCSKLQNLSLEGLR----LSDPIVNTLAKN-SNLVRLNLSGCSGFSE  157 (336)
T ss_dssp             CCCSCCCCBCCCEEECTTCE--ECHHHHHHHHTTBCCCSEEECTTCB----CCHHHHHHHTTC-TTCSEEECTTCBSCCH
T ss_pred             cchhhccCCCCCEEEccCCC--cCHHHHHHHHhhCCCCCEEeCcCcc----cCHHHHHHHhcC-CCCCEEECCCCCCCCH
Confidence            33446678999999999985  4444 78889999999999998841    121133 67778 99999999999 5653


Q ss_pred             CC-chhhccCCCCcEEEecCC-ccCCceeeeeCCCCCC-cccEEeccccc-cc--cceeeCCCCCCCccEEEecCCcccc
Q 045118           93 DP-MPTLEKLPHLEVLKLKQN-SYLERKLACVGCSSFS-QLKILHLKSML-WL--EEWTMGAGAMPKLESLILNPCAYLR  166 (221)
Q Consensus        93 ~~-~~~l~~l~~L~~L~l~~~-~~~~~~l~~~~~~~~~-~L~~L~L~~~~-~l--~~~~~~~~~l~~L~~L~l~~~~~l~  166 (221)
                      .. ...++.+++|++|++++| .+....++.. ...++ +|++|++++|. .+  ..++..++.+++|++|++++|..++
T Consensus       158 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~  236 (336)
T 2ast_B          158 FALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK  236 (336)
T ss_dssp             HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC
T ss_pred             HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC
Confidence            22 234778999999999988 6654434444 56788 99999999985 24  3345555679999999999987554


Q ss_pred             -CcchhhccCCcCcEEEccCCC
Q 045118          167 -KLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       167 -~~~~~~~~l~~L~~l~l~~~~  187 (221)
                       ..+..+..+++|++|++.+|.
T Consensus       237 ~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          237 NDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             GGGGGGGGGCTTCCEEECTTCT
T ss_pred             HHHHHHHhCCCCCCEeeCCCCC
Confidence             456678899999999999985

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.50  E-value=2.3e-13  Score=116.90  Aligned_cols=102  Identities=18%  Similarity=0.146  Sum_probs=59.0

Q ss_pred             CcceeceecCCCC--ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCc
Q 045118            3 NLIFISALHPSSC--TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSL   80 (221)
Q Consensus         3 ~L~~L~~~~~~~~--~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L   80 (221)
                      +|++|..-.....  .+..++++++|++|+++++.  .....|+.++++++|++|+++++    ++.. +|.. .+ ++|
T Consensus        22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~N----~l~~-lp~~-~l-~~L   92 (520)
T 2z7x_B           22 KTTILNISQNYISELWTSDILSLSKLRILIISHNR--IQYLDISVFKFNQELEYLDLSHN----KLVK-ISCH-PT-VNL   92 (520)
T ss_dssp             TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC--CCEEEGGGGTTCTTCCEEECCSS----CCCE-EECC-CC-CCC
T ss_pred             cccEEECCCCcccccChhhccccccccEEecCCCc--cCCcChHHhhcccCCCEEecCCC----ceee-cCcc-cc-CCc
Confidence            4666653333222  44678888999999998886  55555778888888999988874    1122 3322 33 455


Q ss_pred             cEEEeecccCCCCC-chhhccCCCCcEEEecCCc
Q 045118           81 TQLSLSNTELMEDP-MPTLEKLPHLEVLKLKQNS  113 (221)
Q Consensus        81 ~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~  113 (221)
                      ++|++++|.+...+ +..++.+++|++|++++|.
T Consensus        93 ~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~  126 (520)
T 2z7x_B           93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH  126 (520)
T ss_dssp             SEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred             cEEeccCCccccccchhhhccCCcceEEEecCcc
Confidence            55555555544321 2344444444444444443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.49  E-value=1.3e-13  Score=106.47  Aligned_cols=129  Identities=22%  Similarity=0.259  Sum_probs=74.9

Q ss_pred             CCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCC
Q 045118           50 HKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFS  128 (221)
Q Consensus        50 ~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~  128 (221)
                      ++|++|+++++    ++..+.| .+..+ ++|+.|++++|.+...+...++.+++|++|++++|.+..  ++...+..++
T Consensus        40 ~~L~~L~Ls~n----~i~~~~~~~~~~l-~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~~l~  112 (229)
T 3e6j_A           40 TNAQILYLHDN----QITKLEPGVFDSL-INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV--LPSAVFDRLV  112 (229)
T ss_dssp             TTCSEEECCSS----CCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCT
T ss_pred             CCCCEEEcCCC----ccCccCHHHhhCc-cCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCc--cChhHhCcch
Confidence            56666666653    2222123 45556 666666666666665554455666666666666666543  2211034566


Q ss_pred             cccEEeccccccccceeeCCCCCCCccEEEecCCccccCcch-hhccCCcCcEEEccCCC
Q 045118          129 QLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPE-ELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       129 ~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~l~l~~~~  187 (221)
                      +|+.|+++++. +..++..+..+++|+.|++++ +.+..++. .+..+++|+++++.+++
T Consensus       113 ~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          113 HLKELFMCCNK-LTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             TCCEEECCSSC-CCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             hhCeEeccCCc-ccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCC
Confidence            66666666665 556665556666677777666 34555543 35666667777766654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.49  E-value=4.4e-14  Score=113.88  Aligned_cols=155  Identities=20%  Similarity=0.151  Sum_probs=80.7

Q ss_pred             CCCccEEEEEecCCccccchhHhh--ccCCCCcEEEeeecCceeeehhhcc-----ccCcCCCCccEEEeecccCCCCCc
Q 045118           23 LPNVRTFRISGDLSYYHSGVSKSL--CKLHKLECLKLVNKGKMWQLSRMIL-----SEYKFPPSLTQLSLSNTELMEDPM   95 (221)
Q Consensus        23 l~~Lr~L~l~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~L~~Llp-----~l~~~~~~L~~L~l~~~~~~~~~~   95 (221)
                      +++|++|+++++.  ..+..|..+  .++++|++|+++++.    +....+     .+..+ ++|++|++++|.+...+.
T Consensus        90 ~~~L~~L~l~~n~--l~~~~~~~~~~~~~~~L~~L~Ls~n~----i~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~  162 (310)
T 4glp_A           90 YSRLKELTLEDLK--ITGTMPPLPLEATGLALSSLRLRNVS----WATGRSWLAELQQWLK-PGLKVLSIAQAHSPAFSC  162 (310)
T ss_dssp             HSCCCEEEEESCC--CBSCCCCCSSSCCCBCCSSCEEESCC----CSSTTSSHHHHHTTBC-SCCCEEEEECCSSCCCCT
T ss_pred             cCceeEEEeeCCE--eccchhhhhhhccCCCCCEEEeeccc----ccchhhhhHHHHhhhc-cCCCEEEeeCCCcchhhH
Confidence            3456666666664  444455554  566666666666531    111011     12234 666666666666655554


Q ss_pred             hhhccCCCCcEEEecCCccCCc-ee--eeeCCCCCCcccEEeccccccccceeeC----CCCCCCccEEEecCCccccCc
Q 045118           96 PTLEKLPHLEVLKLKQNSYLER-KL--ACVGCSSFSQLKILHLKSMLWLEEWTMG----AGAMPKLESLILNPCAYLRKL  168 (221)
Q Consensus        96 ~~l~~l~~L~~L~l~~~~~~~~-~l--~~~~~~~~~~L~~L~L~~~~~l~~~~~~----~~~l~~L~~L~l~~~~~l~~~  168 (221)
                      ..++.+++|++|++++|.+.+. .+  ... .+.+++|++|++++|. ++.++..    ++.+++|++|++++|. +...
T Consensus       163 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~  239 (310)
T 4glp_A          163 EQVRAFPALTSLDLSDNPGLGERGLMAALC-PHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNS-LRAT  239 (310)
T ss_dssp             TSCCCCTTCCEEECCSCTTCHHHHHHTTSC-TTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSC-CCCC
T ss_pred             HHhccCCCCCEEECCCCCCccchhhhHHHh-hhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCC-CCcc
Confidence            5566666666666666654321 01  111 2456666666666665 4433221    2345666666666633 3333


Q ss_pred             -chhhccC---CcCcEEEccCCC
Q 045118          169 -PEELWCI---KSLCKLELHWPQ  187 (221)
Q Consensus       169 -~~~~~~l---~~L~~l~l~~~~  187 (221)
                       |..+..+   ++|++|++.++.
T Consensus       240 ~p~~~~~~~~~~~L~~L~Ls~N~  262 (310)
T 4glp_A          240 VNPSAPRCMWSSALNSLNLSFAG  262 (310)
T ss_dssp             CCSCCSSCCCCTTCCCEECCSSC
T ss_pred             chhhHHhccCcCcCCEEECCCCC
Confidence             4444444   466666666543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.48  E-value=9.2e-14  Score=105.58  Aligned_cols=131  Identities=24%  Similarity=0.222  Sum_probs=101.8

Q ss_pred             CCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCCCchhhcc
Q 045118           23 LPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMEDPMPTLEK  100 (221)
Q Consensus        23 l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~~~~~l~~  100 (221)
                      .++|++|+++++.  .....+..+.++++|++|+++++    +++. +|  .+..+ ++|++|++++|.+...+...++.
T Consensus        27 ~~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n----~l~~-~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~   98 (208)
T 2o6s_A           27 PAQTTYLDLETNS--LKSLPNGVFDELTSLTQLYLGGN----KLQS-LPNGVFNKL-TSLTYLNLSTNQLQSLPNGVFDK   98 (208)
T ss_dssp             CTTCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCSS----CCCC-CCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCCcEEEcCCCc--cCcCChhhhcccccCcEEECCCC----ccCc-cChhhcCCC-CCcCEEECCCCcCCccCHhHhcC
Confidence            5689999999996  44444456789999999999884    2343 34  46788 99999999999998777667889


Q ss_pred             CCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCCCCCccEEEecCCcc
Q 045118          101 LPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAY  164 (221)
Q Consensus       101 l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~  164 (221)
                      +++|++|++++|.+..  ++...+..+++|+.|+++++. +.+++.. +..+++|++|++++|+.
T Consensus        99 l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A           99 LTQLKELALNTNQLQS--LPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             CTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             ccCCCEEEcCCCcCcc--cCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCe
Confidence            9999999999888765  332214678999999999987 7777654 56789999999998643

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.48  E-value=8e-14  Score=102.40  Aligned_cols=130  Identities=22%  Similarity=0.188  Sum_probs=75.0

Q ss_pred             CCCccEEEEEecCCccc-cchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhhccC
Q 045118           23 LPNVRTFRISGDLSYYH-SGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKL  101 (221)
Q Consensus        23 l~~Lr~L~l~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l  101 (221)
                      .++|++|+++++.  .. ..+|..+..+++|++|+++++    .+.. ++.+..+ ++|++|++++|.+....+..++.+
T Consensus        23 ~~~L~~L~l~~n~--l~~~~i~~~~~~l~~L~~L~l~~n----~l~~-~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l   94 (168)
T 2ell_A           23 PAAVRELVLDNCK--SNDGKIEGLTAEFVNLEFLSLINV----GLIS-VSNLPKL-PKLKKLELSENRIFGGLDMLAEKL   94 (168)
T ss_dssp             TTSCSEEECCSCB--CBTTBCSSCCGGGGGCCEEEEESS----CCCC-CSSCCCC-SSCCEEEEESCCCCSCCCHHHHHC
T ss_pred             cccCCEEECCCCC--CChhhHHHHHHhCCCCCEEeCcCC----CCCC-hhhhccC-CCCCEEECcCCcCchHHHHHHhhC
Confidence            4667777777764  22 255666666777777777663    1222 2455556 677777777777665433445556


Q ss_pred             CCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceee----CCCCCCCccEEEecCC
Q 045118          102 PHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTM----GAGAMPKLESLILNPC  162 (221)
Q Consensus       102 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~----~~~~l~~L~~L~l~~~  162 (221)
                      ++|++|++++|.+........ +..+++|+.|++++|. +..++.    .+..+++|+.|++.+|
T Consensus        95 ~~L~~L~Ls~N~l~~~~~~~~-l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           95 PNLTHLNLSGNKLKDISTLEP-LKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             TTCCEEECBSSSCCSSGGGGG-GSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             CCCCEEeccCCccCcchhHHH-HhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC
Confidence            777777776666554211123 4456666666666665 444433    3445666666666653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.47  E-value=1.1e-13  Score=112.54  Aligned_cols=178  Identities=16%  Similarity=0.170  Sum_probs=119.9

Q ss_pred             CCcceeceecCCC-CChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCce---e--------eehhh
Q 045118            2 KNLIFISALHPSS-CTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKM---W--------QLSRM   69 (221)
Q Consensus         2 ~~L~~L~~~~~~~-~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~---~--------~L~~L   69 (221)
                      ++|++|..-.... .++..+.  ++|++|+++++.  .....+..+.++++|++|+++++.-.   .        +|+.+
T Consensus       102 ~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L  177 (332)
T 2ft3_A          102 RKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR--IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYL  177 (332)
T ss_dssp             TTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC--CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCC
T ss_pred             CCCCEEECCCCcCCccCcccc--ccCCEEECCCCc--cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEE
Confidence            4566665322221 1343333  788888888875  33333345778888888888764110   0        22222


Q ss_pred             -cc--ccC----cCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEecccccccc
Q 045118           70 -IL--SEY----KFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLE  142 (221)
Q Consensus        70 -lp--~l~----~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~  142 (221)
                       +.  .+.    .++++|+.|++++|.+...++..++.+++|+.|++++|.+... .+.. +..+++|+.|++++|. +.
T Consensus       178 ~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~-~~~l~~L~~L~L~~N~-l~  254 (332)
T 2ft3_A          178 RISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI-ENGS-LSFLPTLRELHLDNNK-LS  254 (332)
T ss_dssp             BCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC-CTTG-GGGCTTCCEEECCSSC-CC
T ss_pred             ECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC-ChhH-hhCCCCCCEEECCCCc-Ce
Confidence             00  111    1126899999999999887767888999999999998887652 2223 5578999999999988 88


Q ss_pred             ceeeCCCCCCCccEEEecCCccccCcchh-hcc------CCcCcEEEccCCC
Q 045118          143 EWTMGAGAMPKLESLILNPCAYLRKLPEE-LWC------IKSLCKLELHWPQ  187 (221)
Q Consensus       143 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~------l~~L~~l~l~~~~  187 (221)
                      .++..++.+++|+.|++++| .++.++.. +..      .++++++++.+++
T Consensus       255 ~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          255 RVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             BCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred             ecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc
Confidence            88888888999999999984 56666542 222      4678999999887

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.46  E-value=2.3e-13  Score=105.18  Aligned_cols=130  Identities=20%  Similarity=0.172  Sum_probs=108.6

Q ss_pred             CCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCCCchhhcc
Q 045118           23 LPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMEDPMPTLEK  100 (221)
Q Consensus        23 l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~~~~~l~~  100 (221)
                      .++|+.|+++++.  .....+..+.++++|++|+++++    ++.. +|  .+..+ ++|+.|++++|.+...+...++.
T Consensus        39 ~~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~L~~N----~l~~-i~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~~~~  110 (229)
T 3e6j_A           39 PTNAQILYLHDNQ--ITKLEPGVFDSLINLKELYLGSN----QLGA-LPVGVFDSL-TQLTVLDLGTNQLTVLPSAVFDR  110 (229)
T ss_dssp             CTTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECCSS----CCCC-CCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCCCEEEcCCCc--cCccCHHHhhCccCCcEEECCCC----CCCC-cChhhcccC-CCcCEEECCCCcCCccChhHhCc
Confidence            3889999999997  55556788999999999999985    2344 44  56888 99999999999999877667889


Q ss_pred             CCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceee-CCCCCCCccEEEecCCcc
Q 045118          101 LPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTM-GAGAMPKLESLILNPCAY  164 (221)
Q Consensus       101 l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~  164 (221)
                      +++|++|++++|.+..  ++.. +..+++|+.|+++++. +..++. .+..+++|+.|++.+++.
T Consensus       111 l~~L~~L~Ls~N~l~~--lp~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          111 LVHLKELFMCCNKLTE--LPRG-IERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             CTTCCEEECCSSCCCS--CCTT-GGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred             chhhCeEeccCCcccc--cCcc-cccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCc
Confidence            9999999999998874  6655 6789999999999987 777764 467799999999999764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.45  E-value=3.9e-14  Score=111.76  Aligned_cols=146  Identities=20%  Similarity=0.206  Sum_probs=76.1

Q ss_pred             cCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhhc
Q 045118           20 LGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLE   99 (221)
Q Consensus        20 l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l~   99 (221)
                      ++.+++|+.|+++++.   ...++ .+..+++|++|+++++    ++.. ++.+..+ ++|+.|++++|.+...+  .+.
T Consensus        37 ~~~l~~L~~L~l~~n~---i~~l~-~l~~l~~L~~L~L~~N----~i~~-~~~l~~l-~~L~~L~L~~N~l~~l~--~~~  104 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSN---IQSLA-GMQFFTNLKELHLSHN----QISD-LSPLKDL-TKLEELSVNRNRLKNLN--GIP  104 (263)
T ss_dssp             HHHHTTCSEEECTTSC---CCCCT-TGGGCTTCCEEECCSS----CCCC-CGGGTTC-SSCCEEECCSSCCSCCT--TCC
T ss_pred             hhhcCcCcEEECcCCC---cccch-HHhhCCCCCEEECCCC----ccCC-ChhhccC-CCCCEEECCCCccCCcC--ccc
Confidence            4455666666666653   22333 4555666666666553    1222 2335555 56666666666655432  222


Q ss_pred             cCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcCc
Q 045118          100 KLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLC  179 (221)
Q Consensus       100 ~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~  179 (221)
                      . ++|++|++++|.+..  ++ . +..+++|+.|++++|. +++++ .++.+++|+.|++++| .+..+ ..+..+++|+
T Consensus       105 ~-~~L~~L~L~~N~l~~--~~-~-l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~  175 (263)
T 1xeu_A          105 S-ACLSRLFLDNNELRD--TD-S-LIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGN-EITNT-GGLTRLKKVN  175 (263)
T ss_dssp             C-SSCCEEECCSSCCSB--SG-G-GTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTS-CCCBC-TTSTTCCCCC
T ss_pred             c-CcccEEEccCCccCC--Ch-h-hcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCC-cCcch-HHhccCCCCC
Confidence            2 566666666555543  22 2 4455666666666555 55443 3445566666666653 33333 3455556666


Q ss_pred             EEEccCC
Q 045118          180 KLELHWP  186 (221)
Q Consensus       180 ~l~l~~~  186 (221)
                      .|++.++
T Consensus       176 ~L~l~~N  182 (263)
T 1xeu_A          176 WIDLTGQ  182 (263)
T ss_dssp             EEEEEEE
T ss_pred             EEeCCCC
Confidence            6665543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.45  E-value=1.3e-13  Score=120.56  Aligned_cols=126  Identities=17%  Similarity=0.178  Sum_probs=62.7

Q ss_pred             CccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCCCchhhccCC
Q 045118           25 NVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMEDPMPTLEKLP  102 (221)
Q Consensus        25 ~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~  102 (221)
                      ++++|++++|.  .....+..|.++++|++|+++++    +++. +|  .+..+ ++|++|++++|.+...+..+++.++
T Consensus        53 ~~~~LdLs~N~--i~~l~~~~f~~l~~L~~L~Ls~N----~i~~-i~~~~f~~L-~~L~~L~Ls~N~l~~l~~~~f~~L~  124 (635)
T 4g8a_A           53 STKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRC----EIQT-IEDGAYQSL-SHLSTLILTGNPIQSLALGAFSGLS  124 (635)
T ss_dssp             TCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTC----CCCE-ECTTTTTTC-TTCCEEECTTCCCCEECGGGGTTCT
T ss_pred             CCCEEEeeCCC--CCCCCHHHHhCCCCCCEEECCCC----cCCC-cChhHhcCC-CCCCEEEccCCcCCCCCHHHhcCCC
Confidence            45566666553  22222344555666666666553    1222 22  45555 5566666665555554444555555


Q ss_pred             CCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce--eeCCCCCCCccEEEecC
Q 045118          103 HLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW--TMGAGAMPKLESLILNP  161 (221)
Q Consensus       103 ~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~--~~~~~~l~~L~~L~l~~  161 (221)
                      +|++|++++|.+... .+.. ++.+++|++|+++++. +..+  +..++.+++|++|++++
T Consensus       125 ~L~~L~Ls~N~l~~l-~~~~-~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~  182 (635)
T 4g8a_A          125 SLQKLVAVETNLASL-ENFP-IGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSS  182 (635)
T ss_dssp             TCCEEECTTSCCCCS-TTCC-CTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCS
T ss_pred             CCCEEECCCCcCCCC-Chhh-hhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccC
Confidence            666666655554431 1112 3445555666555554 3322  33344455555555555

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.45  E-value=6e-13  Score=106.43  Aligned_cols=145  Identities=22%  Similarity=0.255  Sum_probs=113.3

Q ss_pred             CCCcceeceecCCCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCc
Q 045118            1 LKNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSL   80 (221)
Q Consensus         1 L~~L~~L~~~~~~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L   80 (221)
                      +++|++|............++++++|+.|+++++.   ...++ .+.++++|++|+++++    .+.. ++.+..+ ++|
T Consensus        67 l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~---l~~~~-~l~~l~~L~~L~L~~n----~i~~-~~~l~~l-~~L  136 (291)
T 1h6t_A           67 LPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENK---VKDLS-SLKDLKKLKSLSLEHN----GISD-INGLVHL-PQL  136 (291)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC---CCCGG-GGTTCTTCCEEECTTS----CCCC-CGGGGGC-TTC
T ss_pred             CCCCCEEEccCCccCCCcccccCCCCCEEECCCCc---CCCCh-hhccCCCCCEEECCCC----cCCC-ChhhcCC-CCC
Confidence            35677776443332322338999999999999995   34444 4899999999999985    2233 5677888 999


Q ss_pred             cEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEec
Q 045118           81 TQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILN  160 (221)
Q Consensus        81 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~  160 (221)
                      +.|++++|.+...  ..++.+++|+.|++++|.+...  + . +..+++|+.|++++|. +++++ .+..+++|+.|+++
T Consensus       137 ~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~--~-~-l~~l~~L~~L~L~~N~-i~~l~-~l~~l~~L~~L~l~  208 (291)
T 1h6t_A          137 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI--V-P-LAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELF  208 (291)
T ss_dssp             CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC--G-G-GTTCTTCCEEECCSSC-CCBCG-GGTTCTTCSEEEEE
T ss_pred             CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc--h-h-hcCCCccCEEECCCCc-CCCCh-hhccCCCCCEEECc
Confidence            9999999999865  5788999999999999987652  2 2 5578999999999997 77775 46779999999999


Q ss_pred             CCc
Q 045118          161 PCA  163 (221)
Q Consensus       161 ~~~  163 (221)
                      +|.
T Consensus       209 ~n~  211 (291)
T 1h6t_A          209 SQE  211 (291)
T ss_dssp             EEE
T ss_pred             CCc
Confidence            854

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.45  E-value=3.1e-13  Score=103.79  Aligned_cols=109  Identities=18%  Similarity=0.184  Sum_probs=45.4

Q ss_pred             cCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeCCCCC
Q 045118           73 EYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMGAGAM  151 (221)
Q Consensus        73 l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l  151 (221)
                      +..+ ++|+.|++++|.+....+..++.+++|++|++++|.+..  ++..-+..+++|+.|+++++. +..+ +..+..+
T Consensus        52 ~~~l-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l  127 (220)
T 2v9t_B           52 FSPY-KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE--LPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDL  127 (220)
T ss_dssp             STTC-TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred             hhCC-CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc--cCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCC
Confidence            3444 444444444444443333344444444444444444332  111102234444444444444 3333 2223344


Q ss_pred             CCccEEEecCCccccCcch-hhccCCcCcEEEccCC
Q 045118          152 PKLESLILNPCAYLRKLPE-ELWCIKSLCKLELHWP  186 (221)
Q Consensus       152 ~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~l~l~~~  186 (221)
                      ++|+.|++++ +.+..++. .+..+++|+++++.++
T Consensus       128 ~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B          128 HNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             TTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCC
Confidence            4445555444 22333322 2444445555555443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.45  E-value=1.2e-12  Score=111.03  Aligned_cols=166  Identities=14%  Similarity=0.083  Sum_probs=108.8

Q ss_pred             CCcceeceecCCCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCc-e--e----eehhh-----
Q 045118            2 KNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGK-M--W----QLSRM-----   69 (221)
Q Consensus         2 ~~L~~L~~~~~~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~--~----~L~~L-----   69 (221)
                      ++|+.|..-...-... .++.+++|++|+++++.  . ..++  ++++++|++|+++++.- .  +    +|+.|     
T Consensus        64 ~~L~~L~Ls~n~l~~~-~~~~l~~L~~L~Ls~N~--l-~~~~--~~~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N  137 (457)
T 3bz5_A           64 TGLTKLICTSNNITTL-DLSQNTNLTYLACDSNK--L-TNLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARN  137 (457)
T ss_dssp             TTCSEEECCSSCCSCC-CCTTCTTCSEEECCSSC--C-SCCC--CTTCTTCCEEECCSSCCSCCCCTTCTTCCEEECTTS
T ss_pred             CCCCEEEccCCcCCeE-ccccCCCCCEEECcCCC--C-ceee--cCCCCcCCEEECCCCcCCeecCCCCCcCCEEECCCC
Confidence            4556665333222222 27778888888888875  2 2232  67778888888876410 0  0    11111     


Q ss_pred             -cc--ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceee
Q 045118           70 -IL--SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTM  146 (221)
Q Consensus        70 -lp--~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~  146 (221)
                       +.  .++.+ ++|+.|++++|......  .++.+++|++|++++|.+.+  ++   ...+++|+.|+++++. ++.+  
T Consensus       138 ~l~~l~l~~l-~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~--l~---l~~l~~L~~L~l~~N~-l~~~--  206 (457)
T 3bz5_A          138 TLTEIDVSHN-TQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE--LD---VSQNKLLNRLNCDTNN-ITKL--  206 (457)
T ss_dssp             CCSCCCCTTC-TTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC--CC---CTTCTTCCEEECCSSC-CSCC--
T ss_pred             ccceeccccC-CcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce--ec---cccCCCCCEEECcCCc-CCee--
Confidence             11  23444 56666666666332221  35567888888888777665  33   5578999999999988 7776  


Q ss_pred             CCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118          147 GAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       147 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      .++.+++|+.|++++ +.+..+|  ++.+++|++|++.++.
T Consensus       207 ~l~~l~~L~~L~Ls~-N~l~~ip--~~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          207 DLNQNIQLTFLDCSS-NKLTEID--VTPLTQLTYFDCSVNP  244 (457)
T ss_dssp             CCTTCTTCSEEECCS-SCCSCCC--CTTCTTCSEEECCSSC
T ss_pred             ccccCCCCCEEECcC-CcccccC--ccccCCCCEEEeeCCc
Confidence            477899999999999 4567777  7889999999998865

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.44  E-value=4.9e-13  Score=116.08  Aligned_cols=103  Identities=21%  Similarity=0.177  Sum_probs=59.8

Q ss_pred             CCcceeceecCCCC--ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCC
Q 045118            2 KNLIFISALHPSSC--TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPS   79 (221)
Q Consensus         2 ~~L~~L~~~~~~~~--~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~   79 (221)
                      ++|++|..-.....  .+..++++++|++|++++|.  .....|+.+.++++|++|+++++    .++. +|.. .+ ++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~Ls~N----~l~~-lp~~-~l-~~  122 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR--IRSLDFHVFLFNQDLEYLDVSHN----RLQN-ISCC-PM-AS  122 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC--CCEECTTTTTTCTTCCEEECTTS----CCCE-ECSC-CC-TT
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCC--CCcCCHHHhCCCCCCCEEECCCC----cCCc-cCcc-cc-cc
Confidence            35666653333222  44678888999999998886  55555777888888888888874    1122 3322 34 45


Q ss_pred             ccEEEeecccCCCCC-chhhccCCCCcEEEecCCc
Q 045118           80 LTQLSLSNTELMEDP-MPTLEKLPHLEVLKLKQNS  113 (221)
Q Consensus        80 L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~  113 (221)
                      |++|++++|.+...+ +..++.+++|++|++++|.
T Consensus       123 L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~  157 (562)
T 3a79_B          123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK  157 (562)
T ss_dssp             CSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred             CCEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence            555555555544322 1344455555555554443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.44  E-value=5e-13  Score=102.61  Aligned_cols=110  Identities=18%  Similarity=0.171  Sum_probs=50.2

Q ss_pred             cCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeCCCCC
Q 045118           73 EYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMGAGAM  151 (221)
Q Consensus        73 l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l  151 (221)
                      +..+ ++|+.|++++|.+...+...++.+++|++|++++|.+... .+.. +..+++|+.|+++++. +..+ +..+..+
T Consensus        53 ~~~l-~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l  128 (220)
T 2v70_A           53 FKKL-PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV-QHKM-FKGLESLKTLMLRSNR-ITCVGNDSFIGL  128 (220)
T ss_dssp             GGGC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CGGG-GTTCSSCCEEECTTSC-CCCBCTTSSTTC
T ss_pred             hccC-CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc-CHhH-hcCCcCCCEEECCCCc-CCeECHhHcCCC
Confidence            3444 4555555555554443333444555555555554444331 1112 3344555555555544 3333 2334445


Q ss_pred             CCccEEEecCCccccCc-chhhccCCcCcEEEccCCC
Q 045118          152 PKLESLILNPCAYLRKL-PEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       152 ~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~l~l~~~~  187 (221)
                      ++|+.|++++| .+..+ |..+..+++|++|++.+++
T Consensus       129 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          129 SSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             TTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             ccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence            55555555542 23333 3444555555555555443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.43  E-value=5.3e-13  Score=102.50  Aligned_cols=131  Identities=18%  Similarity=0.213  Sum_probs=106.6

Q ss_pred             CCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhhccCC
Q 045118           24 PNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKLP  102 (221)
Q Consensus        24 ~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~  102 (221)
                      ++++.|+++++.  .....+..+.++++|++|+++++    ++..+.| .+..+ ++|++|++++|.+...+...++.++
T Consensus        32 ~~l~~L~l~~n~--i~~i~~~~~~~l~~L~~L~Ls~N----~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~f~~l~  104 (220)
T 2v9t_B           32 ETITEIRLEQNT--IKVIPPGAFSPYKKLRRIDLSNN----QISELAPDAFQGL-RSLNSLVLYGNKITELPKSLFEGLF  104 (220)
T ss_dssp             TTCCEEECCSSC--CCEECTTSSTTCTTCCEEECCSS----CCCEECTTTTTTC-SSCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             cCCCEEECCCCc--CCCcCHhHhhCCCCCCEEECCCC----cCCCcCHHHhhCC-cCCCEEECCCCcCCccCHhHccCCC
Confidence            689999999996  44444457899999999999985    2344235 78889 9999999999999988777788999


Q ss_pred             CCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceee-CCCCCCCccEEEecCCcc
Q 045118          103 HLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTM-GAGAMPKLESLILNPCAY  164 (221)
Q Consensus       103 ~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~  164 (221)
                      +|++|++++|.+... .+.. +..+++|+.|+++++. ++.++. .+..+++|+.|++++++.
T Consensus       105 ~L~~L~L~~N~l~~~-~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          105 SLQLLLLNANKINCL-RVDA-FQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             TCCEEECCSSCCCCC-CTTT-TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCEEECCCCCCCEe-CHHH-cCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence            999999999987653 2334 6678999999999998 777754 367799999999999653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.43  E-value=5.3e-13  Score=105.27  Aligned_cols=143  Identities=21%  Similarity=0.248  Sum_probs=110.6

Q ss_pred             CCcceeceecCCCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCcc
Q 045118            2 KNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLT   81 (221)
Q Consensus         2 ~~L~~L~~~~~~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~   81 (221)
                      ++|+.|..-.......+.++.+++|++|+++++.   ...++. +.++++|++|+++++    .+.. +|.+..  ++|+
T Consensus        41 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~---i~~~~~-l~~l~~L~~L~L~~N----~l~~-l~~~~~--~~L~  109 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQ---ISDLSP-LKDLTKLEELSVNRN----RLKN-LNGIPS--ACLS  109 (263)
T ss_dssp             TTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSC---CCCCGG-GTTCSSCCEEECCSS----CCSC-CTTCCC--SSCC
T ss_pred             CcCcEEECcCCCcccchHHhhCCCCCEEECCCCc---cCCChh-hccCCCCCEEECCCC----ccCC-cCcccc--Cccc
Confidence            4666666433333334478899999999999995   444555 899999999999985    2233 443332  7899


Q ss_pred             EEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecC
Q 045118           82 QLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNP  161 (221)
Q Consensus        82 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~  161 (221)
                      .|++++|.+...  +.++.+++|+.|++++|.+.+  ++ . +..+++|+.|++++|. +.++ ..+..+++|+.|++++
T Consensus       110 ~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~--~~-~-l~~l~~L~~L~L~~N~-i~~~-~~l~~l~~L~~L~l~~  181 (263)
T 1xeu_A          110 RLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS--IV-M-LGFLSKLEVLDLHGNE-ITNT-GGLTRLKKVNWIDLTG  181 (263)
T ss_dssp             EEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB--CG-G-GGGCTTCCEEECTTSC-CCBC-TTSTTCCCCCEEEEEE
T ss_pred             EEEccCCccCCC--hhhcCcccccEEECCCCcCCC--Ch-H-HccCCCCCEEECCCCc-Ccch-HHhccCCCCCEEeCCC
Confidence            999999999864  468899999999999998876  33 4 6679999999999998 7777 5677899999999998


Q ss_pred             Cc
Q 045118          162 CA  163 (221)
Q Consensus       162 ~~  163 (221)
                      +.
T Consensus       182 N~  183 (263)
T 1xeu_A          182 QK  183 (263)
T ss_dssp             EE
T ss_pred             Cc
Confidence            54

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.42  E-value=3e-13  Score=111.34  Aligned_cols=153  Identities=24%  Similarity=0.206  Sum_probs=118.4

Q ss_pred             CCccEEEEEecCCccccchhHhhc-cCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhhccC
Q 045118           24 PNVRTFRISGDLSYYHSGVSKSLC-KLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKL  101 (221)
Q Consensus        24 ~~Lr~L~l~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l  101 (221)
                      .+++.|+++++.  .....+..+. ++++|++|+++++    ++..+.+ .+..+ ++|+.|++++|.+...+...++.+
T Consensus        39 ~~l~~L~Ls~N~--l~~l~~~~~~~~l~~L~~L~L~~N----~i~~i~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l  111 (361)
T 2xot_A           39 SYTALLDLSHNN--LSRLRAEWTPTRLTNLHSLLLSHN----HLNFISSEAFVPV-PNLRYLDLSSNHLHTLDEFLFSDL  111 (361)
T ss_dssp             TTCSEEECCSSC--CCEECTTSSSSCCTTCCEEECCSS----CCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTC
T ss_pred             CCCCEEECCCCC--CCccChhhhhhcccccCEEECCCC----cCCccChhhccCC-CCCCEEECCCCcCCcCCHHHhCCC
Confidence            468999999996  4444445566 8999999999985    2344223 68888 999999999999987776678899


Q ss_pred             CCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCC----CCCCCccEEEecCCccccCcch-hhccCC
Q 045118          102 PHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGA----GAMPKLESLILNPCAYLRKLPE-ELWCIK  176 (221)
Q Consensus       102 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~----~~l~~L~~L~l~~~~~l~~~~~-~~~~l~  176 (221)
                      ++|++|++++|.+... .+.. +..+++|+.|+++++. +..++...    +.+++|+.|++++ +.+..+|. .+..++
T Consensus       112 ~~L~~L~L~~N~i~~~-~~~~-~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~  187 (361)
T 2xot_A          112 QALEVLLLYNNHIVVV-DRNA-FEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQKLP  187 (361)
T ss_dssp             TTCCEEECCSSCCCEE-CTTT-TTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCS-SCCCCCCHHHHHHSC
T ss_pred             cCCCEEECCCCcccEE-CHHH-hCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHHhhhcc
Confidence            9999999999987642 2334 6678999999999988 88776553    5689999999998 56777764 567777


Q ss_pred             c--CcEEEccCCC
Q 045118          177 S--LCKLELHWPQ  187 (221)
Q Consensus       177 ~--L~~l~l~~~~  187 (221)
                      .  ++.|++.+++
T Consensus       188 ~~~l~~l~l~~N~  200 (361)
T 2xot_A          188 AWVKNGLYLHNNP  200 (361)
T ss_dssp             HHHHTTEECCSSC
T ss_pred             HhhcceEEecCCC
Confidence            6  4889999865

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.41  E-value=1.7e-12  Score=98.51  Aligned_cols=129  Identities=26%  Similarity=0.261  Sum_probs=91.8

Q ss_pred             CCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCC
Q 045118           49 LHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSS  126 (221)
Q Consensus        49 l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~  126 (221)
                      .++|++|+++++    ++.. ++  .+..+ ++|++|++++|.+...+...++.+++|++|++++|.+..  ++...+..
T Consensus        27 ~~~l~~L~l~~n----~l~~-~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~   98 (208)
T 2o6s_A           27 PAQTTYLDLETN----SLKS-LPNGVFDEL-TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS--LPNGVFDK   98 (208)
T ss_dssp             CTTCSEEECCSS----CCCC-CCTTTTTTC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTT
T ss_pred             CCCCcEEEcCCC----ccCc-CChhhhccc-ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc--cCHhHhcC
Confidence            357888888874    2233 33  46777 888888888888887665567788888888888887654  32221456


Q ss_pred             CCcccEEeccccccccceeeC-CCCCCCccEEEecCCccccCcchh-hccCCcCcEEEccCCC
Q 045118          127 FSQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYLRKLPEE-LWCIKSLCKLELHWPQ  187 (221)
Q Consensus       127 ~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~l~l~~~~  187 (221)
                      +++|+.|+++++. +..++.. ++.+++|++|++++| .+..++.. +..+++|+++++.+++
T Consensus        99 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A           99 LTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             ccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCC
Confidence            7888888888877 6666543 566888888888884 45566543 6778888888888754

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.40  E-value=3.8e-12  Score=115.59  Aligned_cols=93  Identities=16%  Similarity=0.293  Sum_probs=66.0

Q ss_pred             ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCC
Q 045118           16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDP   94 (221)
Q Consensus        16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~   94 (221)
                      .+..++.+++|+.|+++++.  .....+..+.++++|++|+++++    .+..+.| .+..+ ++|+.|++++|.+...+
T Consensus       282 ~~~~~~~l~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~Ls~N----~l~~~~~~~~~~l-~~L~~L~L~~N~i~~~~  354 (844)
T 3j0a_A          282 NSRVFETLKDLKVLNLAYNK--INKIADEAFYGLDNLQVLNLSYN----LLGELYSSNFYGL-PKVAYIDLQKNHIAIIQ  354 (844)
T ss_dssp             CSCCSSSCCCCCEEEEESCC--CCEECTTTTTTCSSCCEEEEESC----CCSCCCSCSCSSC-TTCCEEECCSCCCCCCC
T ss_pred             ChhhhhcCCCCCEEECCCCc--CCCCChHHhcCCCCCCEEECCCC----CCCccCHHHhcCC-CCCCEEECCCCCCCccC
Confidence            45557788888888888886  55555677888888888888874    2223234 66677 77888888887777666


Q ss_pred             chhhccCCCCcEEEecCCccC
Q 045118           95 MPTLEKLPHLEVLKLKQNSYL  115 (221)
Q Consensus        95 ~~~l~~l~~L~~L~l~~~~~~  115 (221)
                      ...++.+++|++|++++|.+.
T Consensus       355 ~~~~~~l~~L~~L~Ls~N~l~  375 (844)
T 3j0a_A          355 DQTFKFLEKLQTLDLRDNALT  375 (844)
T ss_dssp             SSCSCSCCCCCEEEEETCCSC
T ss_pred             hhhhcCCCCCCEEECCCCCCC
Confidence            556777777888887777654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.40  E-value=8.2e-13  Score=112.98  Aligned_cols=165  Identities=20%  Similarity=0.161  Sum_probs=112.7

Q ss_pred             ChhhcCCC----CCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCce----e----eehhh---------cc---
Q 045118           16 TPDILGRL----PNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKM----W----QLSRM---------IL---   71 (221)
Q Consensus        16 ~~~~l~~l----~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~----~----~L~~L---------lp---   71 (221)
                      +|..+..+    ++|++|+++++.  .....|..+.++++|++|+++++.-.    +    +|+.|         +|   
T Consensus        22 l~~~l~~l~~~~~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~~   99 (487)
T 3oja_A           22 LKQALASLRQSAWNVKELDLSGNP--LSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGP   99 (487)
T ss_dssp             HHHHHHTTSTTGGGCCEEECCSSC--CCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEECT
T ss_pred             hHHHHHHhcccCCCccEEEeeCCc--CCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCCC
Confidence            45444444    499999999996  55566688999999999999884211    1    23322         11   


Q ss_pred             ---------------ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEecc
Q 045118           72 ---------------SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLK  136 (221)
Q Consensus        72 ---------------~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~  136 (221)
                                     ....+ ++|+.|++++|.+...++..++.+++|++|++++|.+.+...... ...+++|+.|+++
T Consensus       100 ~L~~L~L~~N~l~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~~l~~L~~L~Ls  177 (487)
T 3oja_A          100 SIETLHAANNNISRVSCSRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL-AASSDTLEHLNLQ  177 (487)
T ss_dssp             TCCEEECCSSCCCCEEECCC-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG-GGGTTTCCEEECT
T ss_pred             CcCEEECcCCcCCCCCcccc-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH-hhhCCcccEEecC
Confidence                           01123 566666676666665555566778888888888777665322211 2257888888888


Q ss_pred             ccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118          137 SMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       137 ~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      +|. +.+++.. ..+++|+.|++++ +.++.+|..+..+++|+.|++.++.
T Consensus       178 ~N~-l~~~~~~-~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N~  225 (487)
T 3oja_A          178 YNF-IYDVKGQ-VVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNNK  225 (487)
T ss_dssp             TSC-CCEEECC-CCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTSC
T ss_pred             CCc-ccccccc-ccCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecCCc
Confidence            887 7766543 3488899999988 4567777778888999999998865

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.39  E-value=9.1e-14  Score=100.08  Aligned_cols=106  Identities=24%  Similarity=0.240  Sum_probs=56.0

Q ss_pred             ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEecccccccccee--eCCC
Q 045118           72 SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWT--MGAG  149 (221)
Q Consensus        72 ~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~  149 (221)
                      .+..+ ++|+.|++++|.+...  ..++.+++|++|++++|.+... ++.. ...+++|+.|++++|. +++++  ..++
T Consensus        37 ~~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~-~~~~-~~~l~~L~~L~ls~N~-i~~~~~~~~~~  110 (149)
T 2je0_A           37 LTDEF-EELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGG-LEVL-AEKCPNLTHLNLSGNK-IKDLSTIEPLK  110 (149)
T ss_dssp             CCTTC-TTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSC-THHH-HHHCTTCCEEECTTSC-CCSHHHHGGGG
T ss_pred             HHhhc-CCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccch-HHHH-hhhCCCCCEEECCCCc-CCChHHHHHHh
Confidence            33445 5555555555555443  3455555566666655554432 2222 3335556666665555 44432  3445


Q ss_pred             CCCCccEEEecCCccccCcch----hhccCCcCcEEEcc
Q 045118          150 AMPKLESLILNPCAYLRKLPE----ELWCIKSLCKLELH  184 (221)
Q Consensus       150 ~l~~L~~L~l~~~~~l~~~~~----~~~~l~~L~~l~l~  184 (221)
                      .+++|++|++++| .+..+|.    .+..+++|++|++.
T Consensus       111 ~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          111 KLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             GCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             hCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence            5666666666664 3444433    45667777776654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.39  E-value=1.3e-12  Score=114.52  Aligned_cols=145  Identities=22%  Similarity=0.251  Sum_probs=113.0

Q ss_pred             CCCcceeceecCCCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCc
Q 045118            1 LKNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSL   80 (221)
Q Consensus         1 L~~L~~L~~~~~~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L   80 (221)
                      |++|+.|............++.+++|+.|++++|.   ...++ .+..+++|+.|+++++    .+.. ++.+..+ ++|
T Consensus        64 l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~---l~~l~-~l~~l~~L~~L~Ls~N----~l~~-l~~l~~l-~~L  133 (605)
T 1m9s_A           64 LPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENK---IKDLS-SLKDLKKLKSLSLEHN----GISD-INGLVHL-PQL  133 (605)
T ss_dssp             CTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSC---CCCCT-TSTTCTTCCEEECTTS----CCCC-CGGGGGC-TTC
T ss_pred             CCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCC---CCCCh-hhccCCCCCEEEecCC----CCCC-CccccCC-Ccc
Confidence            45677776433332222338999999999999996   33333 7899999999999985    2233 5678888 999


Q ss_pred             cEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEec
Q 045118           81 TQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILN  160 (221)
Q Consensus        81 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~  160 (221)
                      +.|++++|.+...  ..++.+++|+.|++++|.+...  + . +..+++|+.|+|++|. +.+++ .+..+++|+.|+++
T Consensus       134 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~--~-~-l~~l~~L~~L~Ls~N~-i~~l~-~l~~l~~L~~L~L~  205 (605)
T 1m9s_A          134 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI--V-P-LAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELF  205 (605)
T ss_dssp             SEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC--G-G-GTTCTTCCEEECCSSC-CCBCG-GGTTCTTCSEEECC
T ss_pred             CEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc--h-h-hccCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEcc
Confidence            9999999999865  5788999999999999987653  2 2 5578999999999997 77774 57779999999999


Q ss_pred             CCc
Q 045118          161 PCA  163 (221)
Q Consensus       161 ~~~  163 (221)
                      +|.
T Consensus       206 ~N~  208 (605)
T 1m9s_A          206 SQE  208 (605)
T ss_dssp             SEE
T ss_pred             CCc
Confidence            864

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.39  E-value=6.1e-13  Score=97.62  Aligned_cols=129  Identities=25%  Similarity=0.247  Sum_probs=103.8

Q ss_pred             ccCCCCcEEEeeecCceeeeh--hhcc-ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeC
Q 045118           47 CKLHKLECLKLVNKGKMWQLS--RMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVG  123 (221)
Q Consensus        47 ~~l~~L~~L~l~~~~~~~~L~--~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~  123 (221)
                      ...++|++|+++++    .+.  . +| .+..+ ++|+.|++++|.+...  ..++.+++|++|++++|.+... ++.. 
T Consensus        21 ~~~~~L~~L~l~~n----~l~~~~-i~~~~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~-~~~~-   90 (168)
T 2ell_A           21 RTPAAVRELVLDNC----KSNDGK-IEGLTAEF-VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG-LDML-   90 (168)
T ss_dssp             SCTTSCSEEECCSC----BCBTTB-CSSCCGGG-GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSC-CCHH-
T ss_pred             CCcccCCEEECCCC----CCChhh-HHHHHHhC-CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchH-HHHH-
Confidence            44589999999984    223  2 56 56788 9999999999998866  6788999999999999988664 4444 


Q ss_pred             CCCCCcccEEecccccccccee--eCCCCCCCccEEEecCCccccCcch----hhccCCcCcEEEccCCC
Q 045118          124 CSSFSQLKILHLKSMLWLEEWT--MGAGAMPKLESLILNPCAYLRKLPE----ELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       124 ~~~~~~L~~L~L~~~~~l~~~~--~~~~~l~~L~~L~l~~~~~l~~~~~----~~~~l~~L~~l~l~~~~  187 (221)
                      ...+++|+.|++++|. +++++  ..++.+++|+.|++++| .+..+|.    .+..+++|++|++.++.
T Consensus        91 ~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           91 AEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             HHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             HhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            4458999999999997 77765  56778999999999995 5566665    68899999999998875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.39  E-value=9.8e-14  Score=115.07  Aligned_cols=107  Identities=22%  Similarity=0.302  Sum_probs=54.9

Q ss_pred             CCccEEEeecccCCCCCch----hhccCCCCcEEEecCCccCCce----eeeeCCCCCCcccEEeccccccc-----cce
Q 045118           78 PSLTQLSLSNTELMEDPMP----TLEKLPHLEVLKLKQNSYLERK----LACVGCSSFSQLKILHLKSMLWL-----EEW  144 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~----l~~~~~~~~~~L~~L~L~~~~~l-----~~~  144 (221)
                      ++|++|++++|.+.....+    .++.+++|++|++++|.+....    .+.. +..+++|+.|++++|. +     ..+
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~-l~~~~~L~~L~Ls~n~-l~~~g~~~l  236 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG-LAYCQELKVLDLQDNT-FTHLGSSAL  236 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTT-GGGCTTCCEEECCSSC-CHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHH-hhcCCCccEEECcCCC-CCcHHHHHH
Confidence            3566666666655422222    3445566666666655544211    1102 3345666666666665 3     333


Q ss_pred             eeCCCCCCCccEEEecCCccccC-----cchhh--ccCCcCcEEEccCCC
Q 045118          145 TMGAGAMPKLESLILNPCAYLRK-----LPEEL--WCIKSLCKLELHWPQ  187 (221)
Q Consensus       145 ~~~~~~l~~L~~L~l~~~~~l~~-----~~~~~--~~l~~L~~l~l~~~~  187 (221)
                      +..+..+++|++|++++|. +..     ++..+  +.+++|++|++.++.
T Consensus       237 ~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~  285 (386)
T 2ca6_A          237 AIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE  285 (386)
T ss_dssp             HHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             HHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence            4444556666666666644 222     23333  236666777666654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.38  E-value=1.9e-12  Score=99.40  Aligned_cols=131  Identities=14%  Similarity=0.139  Sum_probs=105.0

Q ss_pred             CCccEEEEEecCCccccchh-HhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhhccC
Q 045118           24 PNVRTFRISGDLSYYHSGVS-KSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKL  101 (221)
Q Consensus        24 ~~Lr~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l  101 (221)
                      ..+++|+++++.  .....+ ..+.++++|++|+++++    .+..+.+ .+..+ ++|+.|++++|.+...+...++.+
T Consensus        32 ~~~~~L~L~~N~--l~~~~~~~~~~~l~~L~~L~L~~N----~i~~i~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l  104 (220)
T 2v70_A           32 QYTAELRLNNNE--FTVLEATGIFKKLPQLRKINFSNN----KITDIEEGAFEGA-SGVNEILLTSNRLENVQHKMFKGL  104 (220)
T ss_dssp             TTCSEEECCSSC--CCEECCCCCGGGCTTCCEEECCSS----CCCEECTTTTTTC-TTCCEEECCSSCCCCCCGGGGTTC
T ss_pred             CCCCEEEcCCCc--CCccCchhhhccCCCCCEEECCCC----cCCEECHHHhCCC-CCCCEEECCCCccCccCHhHhcCC
Confidence            457899999996  333323 45889999999999985    2333233 68888 999999999999998887789999


Q ss_pred             CCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeCCCCCCCccEEEecCCcc
Q 045118          102 PHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMGAGAMPKLESLILNPCAY  164 (221)
Q Consensus       102 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~  164 (221)
                      ++|++|++++|.+... .+.. +..+++|+.|+++++. ++.+ +..+..+++|+.|++++++.
T Consensus       105 ~~L~~L~Ls~N~l~~~-~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          105 ESLKTLMLRSNRITCV-GNDS-FIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             SSCCEEECTTSCCCCB-CTTS-STTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             cCCCEEECCCCcCCeE-CHhH-cCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCC
Confidence            9999999999988753 2334 6688999999999988 7777 56678899999999999764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.37  E-value=1.2e-11  Score=101.27  Aligned_cols=113  Identities=19%  Similarity=0.173  Sum_probs=75.5

Q ss_pred             ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCC-CcccEEeccccccccceeeCCCC
Q 045118           72 SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSF-SQLKILHLKSMLWLEEWTMGAGA  150 (221)
Q Consensus        72 ~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~-~~L~~L~L~~~~~l~~~~~~~~~  150 (221)
                      .+..+ ++|++|++++|.+...+...+....++..+++.++..... ++...+..+ ..++.|+++++. ++.++.....
T Consensus        99 ~f~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~-l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~  175 (350)
T 4ay9_X           99 AFQNL-PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT-IERNSFVGLSFESVILWLNKNG-IQEIHNSAFN  175 (350)
T ss_dssp             SBCCC-TTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE-ECTTSSTTSBSSCEEEECCSSC-CCEECTTSST
T ss_pred             hhhhc-cccccccccccccccCCchhhcccchhhhhhhcccccccc-ccccchhhcchhhhhhcccccc-ccCCChhhcc
Confidence            56667 7888888888877765544444555666676654332111 221102222 367788888877 7878766656


Q ss_pred             CCCccEEEecCCccccCcchh-hccCCcCcEEEccCCC
Q 045118          151 MPKLESLILNPCAYLRKLPEE-LWCIKSLCKLELHWPQ  187 (221)
Q Consensus       151 l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~l~l~~~~  187 (221)
                      ..+|+++.+.+++.++.+|.. +..+++|++|++.++.
T Consensus       176 ~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~  213 (350)
T 4ay9_X          176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR  213 (350)
T ss_dssp             TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC
T ss_pred             ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC
Confidence            778889999888888888764 6788999999988764

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.33  E-value=6.4e-13  Score=110.14  Aligned_cols=107  Identities=21%  Similarity=0.208  Sum_probs=55.2

Q ss_pred             CCccEEEeecccCCCCC----ch-hhccCCCCcEEEecCCccCC---ceeeeeCCCCCCcccEEeccccccccce-----
Q 045118           78 PSLTQLSLSNTELMEDP----MP-TLEKLPHLEVLKLKQNSYLE---RKLACVGCSSFSQLKILHLKSMLWLEEW-----  144 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~~~----~~-~l~~l~~L~~L~l~~~~~~~---~~l~~~~~~~~~~L~~L~L~~~~~l~~~-----  144 (221)
                      ++|+.|++++|.+....    .+ .+..+++|+.|++++|.+..   ..++.. +..+++|+.|++++|. +...     
T Consensus       187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~-l~~~~~L~~L~L~~n~-i~~~~~~~l  264 (386)
T 2ca6_A          187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA-LKSWPNLRELGLNDCL-LSARGAAAV  264 (386)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH-GGGCTTCCEEECTTCC-CCHHHHHHH
T ss_pred             CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH-HccCCCcCEEECCCCC-CchhhHHHH
Confidence            56666666666554211    12 45556666666666665431   112323 4455666666666665 3332     


Q ss_pred             eeCC--CCCCCccEEEecCCccccC-----cchhh-ccCCcCcEEEccCCC
Q 045118          145 TMGA--GAMPKLESLILNPCAYLRK-----LPEEL-WCIKSLCKLELHWPQ  187 (221)
Q Consensus       145 ~~~~--~~l~~L~~L~l~~~~~l~~-----~~~~~-~~l~~L~~l~l~~~~  187 (221)
                      +..+  +.+++|++|++++|. +..     +|..+ .++++|++|++.+++
T Consensus       265 ~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          265 VDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             HHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            2222  335666666666643 332     45444 446666666666543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.32  E-value=1.1e-12  Score=94.37  Aligned_cols=128  Identities=20%  Similarity=0.172  Sum_probs=86.1

Q ss_pred             CCCccEEEEEecCCccc-cchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhhccC
Q 045118           23 LPNVRTFRISGDLSYYH-SGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKL  101 (221)
Q Consensus        23 l~~Lr~L~l~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l  101 (221)
                      .++|+.|+++++.  .. +.+|..+..+++|++|+++++    .+.. ++.++.+ ++|++|++++|.+....+..++.+
T Consensus        16 ~~~l~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n----~l~~-~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l   87 (149)
T 2je0_A           16 PSDVKELVLDNSR--SNEGKLEGLTDEFEELEFLSTINV----GLTS-IANLPKL-NKLKKLELSDNRVSGGLEVLAEKC   87 (149)
T ss_dssp             GGGCSEEECTTCB--CBTTBCCSCCTTCTTCCEEECTTS----CCCC-CTTCCCC-TTCCEEECCSSCCCSCTHHHHHHC
T ss_pred             CccCeEEEccCCc--CChhHHHHHHhhcCCCcEEECcCC----CCCC-chhhhcC-CCCCEEECCCCcccchHHHHhhhC
Confidence            4677888888775  33 366667777888888888764    2233 3456666 788888888888776444556668


Q ss_pred             CCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceee----CCCCCCCccEEEec
Q 045118          102 PHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTM----GAGAMPKLESLILN  160 (221)
Q Consensus       102 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~----~~~~l~~L~~L~l~  160 (221)
                      ++|++|++++|.+.....+.. +..+++|+.|++++|. +.+++.    .++.+++|+.|+++
T Consensus        88 ~~L~~L~ls~N~i~~~~~~~~-~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           88 PNLTHLNLSGNKIKDLSTIEP-LKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTCCEEECTTSCCCSHHHHGG-GGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCEEECCCCcCCChHHHHH-HhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence            888888887777665222234 5567788888888776 665543    35567777777664

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.32  E-value=1.3e-12  Score=96.70  Aligned_cols=131  Identities=13%  Similarity=0.069  Sum_probs=82.7

Q ss_pred             ccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCC
Q 045118           47 CKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSS  126 (221)
Q Consensus        47 ~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~  126 (221)
                      .+.++|++|+++++    ++.. +|.+..++++|+.|++++|.+...  ..++.+++|++|++++|.+..  ++..-+..
T Consensus        16 ~~~~~L~~L~l~~n----~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~--~~~~~~~~   86 (176)
T 1a9n_A           16 TNAVRDRELDLRGY----KIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR--IGEGLDQA   86 (176)
T ss_dssp             ECTTSCEEEECTTS----CCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE--ECSCHHHH
T ss_pred             CCcCCceEEEeeCC----CCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc--cCcchhhc
Confidence            44566666666653    1222 344444424777777777776643  456677777777777776653  33210245


Q ss_pred             CCcccEEeccccccccceee--CCCCCCCccEEEecCCccccCcchh----hccCCcCcEEEccCCCH
Q 045118          127 FSQLKILHLKSMLWLEEWTM--GAGAMPKLESLILNPCAYLRKLPEE----LWCIKSLCKLELHWPQP  188 (221)
Q Consensus       127 ~~~L~~L~L~~~~~l~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~----~~~l~~L~~l~l~~~~~  188 (221)
                      +++|+.|++++|. +.+++.  .++.+++|+.|++++|+ +..+|..    +..+++|+.+++..++.
T Consensus        87 l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           87 LPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            6777777777776 566654  45667888888888743 4555653    78888899998888773

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.32  E-value=1.5e-11  Score=106.87  Aligned_cols=95  Identities=20%  Similarity=0.256  Sum_probs=70.6

Q ss_pred             CCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCc---
Q 045118           78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKL---  154 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L---  154 (221)
                      ++|+.|++++|.+...+.    .+++|++|++++|.+..  ++..  .  ++|+.|++++|. ++.+|. +..  +|   
T Consensus       140 ~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~--lp~l--~--~~L~~L~Ls~N~-L~~lp~-~~~--~L~~~  205 (571)
T 3cvr_A          140 ALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTF--LPEL--P--ESLEALDVSTNL-LESLPA-VPV--RNHHS  205 (571)
T ss_dssp             TTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC--CCCC--C--TTCCEEECCSSC-CSSCCC-CC--------
T ss_pred             ccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCC--cchh--h--CCCCEEECcCCC-CCchhh-HHH--hhhcc
Confidence            677778887777765442    46788888887777655  3322  1  788999998887 777766 433  66   


Q ss_pred             ----cEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118          155 ----ESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       155 ----~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                          +.|++++ +.++.+|..+..+++|+.|++.+++
T Consensus       206 ~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          206 EETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             --CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred             cccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCc
Confidence                9999998 5678899888889999999999987

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.31  E-value=2.2e-12  Score=106.12  Aligned_cols=138  Identities=20%  Similarity=0.229  Sum_probs=104.9

Q ss_pred             ChhhcC-CCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCC
Q 045118           16 TPDILG-RLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMED   93 (221)
Q Consensus        16 ~~~~l~-~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~   93 (221)
                      .+..+. ++++|+.|++++|.  .....+..+.++++|++|+++++    .+..+.+ .+..+ ++|+.|++++|.+...
T Consensus        55 ~~~~~~~~l~~L~~L~L~~N~--i~~i~~~~~~~l~~L~~L~Ls~N----~l~~~~~~~~~~l-~~L~~L~L~~N~i~~~  127 (361)
T 2xot_A           55 RAEWTPTRLTNLHSLLLSHNH--LNFISSEAFVPVPNLRYLDLSSN----HLHTLDEFLFSDL-QALEVLLLYNNHIVVV  127 (361)
T ss_dssp             CTTSSSSCCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSS----CCCEECTTTTTTC-TTCCEEECCSSCCCEE
T ss_pred             ChhhhhhcccccCEEECCCCc--CCccChhhccCCCCCCEEECCCC----cCCcCCHHHhCCC-cCCCEEECCCCcccEE
Confidence            334466 89999999999996  44444567999999999999985    3344223 57888 9999999999999877


Q ss_pred             CchhhccCCCCcEEEecCCccCCceeeeeCC---CCCCcccEEeccccccccceee-CCCCCCC--ccEEEecCCc
Q 045118           94 PMPTLEKLPHLEVLKLKQNSYLERKLACVGC---SSFSQLKILHLKSMLWLEEWTM-GAGAMPK--LESLILNPCA  163 (221)
Q Consensus        94 ~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~---~~~~~L~~L~L~~~~~l~~~~~-~~~~l~~--L~~L~l~~~~  163 (221)
                      ++..++.+++|+.|++++|.+..  ++..-+   ..+++|+.|+++++. +..++. .+..++.  ++.|++.+|+
T Consensus       128 ~~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          128 DRNAFEDMAQLQKLYLSQNQISR--FPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCS--CCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             CHHHhCCcccCCEEECCCCcCCe--eCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHhhcceEEecCCC
Confidence            66789999999999999998876  333202   468999999999988 777753 3445665  4778888865

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.31  E-value=6.5e-13  Score=98.38  Aligned_cols=131  Identities=15%  Similarity=0.147  Sum_probs=102.4

Q ss_pred             hcCCCCCccEEEEEecCCccccchhHhhccC-CCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchh
Q 045118           19 ILGRLPNVRTFRISGDLSYYHSGVSKSLCKL-HKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPT   97 (221)
Q Consensus        19 ~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~   97 (221)
                      .+..+++|+.|+++++.   ...++. +..+ ++|++|+++++    .+.. ++.+..+ ++|+.|++++|.+...+...
T Consensus        14 ~~~~~~~L~~L~l~~n~---l~~i~~-~~~~~~~L~~L~Ls~N----~l~~-~~~l~~l-~~L~~L~Ls~N~l~~~~~~~   83 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYK---IPVIEN-LGATLDQFDAIDFSDN----EIRK-LDGFPLL-RRLKTLLVNNNRICRIGEGL   83 (176)
T ss_dssp             EEECTTSCEEEECTTSC---CCSCCC-GGGGTTCCSEEECCSS----CCCE-ECCCCCC-SSCCEEECCSSCCCEECSCH
T ss_pred             hcCCcCCceEEEeeCCC---CchhHH-hhhcCCCCCEEECCCC----CCCc-ccccccC-CCCCEEECCCCcccccCcch
Confidence            35678899999999995   334444 4444 59999999985    2343 4677888 99999999999998766555


Q ss_pred             hccCCCCcEEEecCCccCCceeee--eCCCCCCcccEEeccccccccceeeC----CCCCCCccEEEecCCc
Q 045118           98 LEKLPHLEVLKLKQNSYLERKLAC--VGCSSFSQLKILHLKSMLWLEEWTMG----AGAMPKLESLILNPCA  163 (221)
Q Consensus        98 l~~l~~L~~L~l~~~~~~~~~l~~--~~~~~~~~L~~L~L~~~~~l~~~~~~----~~~l~~L~~L~l~~~~  163 (221)
                      ++.+++|++|++++|.+..  ++.  . +..+++|+.|++++|+ +..++..    ++.+++|+.|+++++.
T Consensus        84 ~~~l~~L~~L~L~~N~i~~--~~~~~~-l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           84 DQALPDLTELILTNNSLVE--LGDLDP-LASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             HHHCTTCCEEECCSCCCCC--GGGGGG-GGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             hhcCCCCCEEECCCCcCCc--chhhHh-hhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            6899999999999998855  343  4 6678999999999998 6666543    6679999999999865

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.29  E-value=6.7e-11  Score=103.84  Aligned_cols=76  Identities=26%  Similarity=0.193  Sum_probs=60.9

Q ss_pred             CCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcE
Q 045118          101 LPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCK  180 (221)
Q Consensus       101 l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~  180 (221)
                      +++|+.|++++|.+..  ++    ..+++|+.|++++|. ++.++.   .+++|+.|++++| .+..+|..+..+++|+.
T Consensus       220 ~~~L~~L~Ls~N~L~~--lp----~~l~~L~~L~Ls~N~-L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~  288 (622)
T 3g06_A          220 PSGLKELIVSGNRLTS--LP----VLPSELKELMVSGNR-LTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETT  288 (622)
T ss_dssp             CTTCCEEECCSSCCSC--CC----CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCE
T ss_pred             CCCCCEEEccCCccCc--CC----CCCCcCcEEECCCCC-CCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccCE
Confidence            3677788887776654  33    246789999999886 777765   5789999999985 67789989999999999


Q ss_pred             EEccCCC
Q 045118          181 LELHWPQ  187 (221)
Q Consensus       181 l~l~~~~  187 (221)
                      |++.+++
T Consensus       289 L~L~~N~  295 (622)
T 3g06_A          289 VNLEGNP  295 (622)
T ss_dssp             EECCSCC
T ss_pred             EEecCCC
Confidence            9999987

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.29  E-value=3.1e-11  Score=105.38  Aligned_cols=110  Identities=19%  Similarity=0.151  Sum_probs=79.5

Q ss_pred             cCcCCCCccEEEeecccCCC-CCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEecccccccccee-eCCCC
Q 045118           73 EYKFPPSLTQLSLSNTELME-DPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWT-MGAGA  150 (221)
Q Consensus        73 l~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~  150 (221)
                      +..+ ++++.|++++|.... ..+..++.+++|++|++++|.+.+. .+.. +.++++|+.|+|++|. +..++ ..++.
T Consensus       465 ~~~~-~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l-~~~~-f~~l~~L~~L~Ls~N~-l~~l~~~~~~~  540 (635)
T 4g8a_A          465 FNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL-SPTA-FNSLSSLQVLNMSHNN-FFSLDTFPYKC  540 (635)
T ss_dssp             TTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE-CTTT-TTTCTTCCEEECTTSC-CCBCCCGGGTT
T ss_pred             cccc-hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCc-ChHH-HcCCCCCCEEECCCCc-CCCCChhHHhC
Confidence            4445 778888888776432 3345677888999999988876542 2334 6678899999999887 77764 34677


Q ss_pred             CCCccEEEecCCccccCc-chhhccC-CcCcEEEccCCC
Q 045118          151 MPKLESLILNPCAYLRKL-PEELWCI-KSLCKLELHWPQ  187 (221)
Q Consensus       151 l~~L~~L~l~~~~~l~~~-~~~~~~l-~~L~~l~l~~~~  187 (221)
                      +++|+.|++++|. +..+ |..+.++ ++|++|++.++|
T Consensus       541 l~~L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          541 LNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             CTTCCEEECTTSC-CCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred             CCCCCEEECCCCc-CCCCCHHHHHhhhCcCCEEEeeCCC
Confidence            8999999999854 4444 5567777 679999998865

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.26  E-value=3.9e-13  Score=116.98  Aligned_cols=156  Identities=21%  Similarity=0.215  Sum_probs=119.2

Q ss_pred             CCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecC-------------------cee----eehhh--------
Q 045118           21 GRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKG-------------------KMW----QLSRM--------   69 (221)
Q Consensus        21 ~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------------------~~~----~L~~L--------   69 (221)
                      ..+++|+.|+++.+   ....+|+.++++++|+.|+++++.                   +.+    +|+.|        
T Consensus       346 ~~~~~L~~L~Ls~n---~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~  422 (567)
T 1dce_A          346 ATDEQLFRCELSVE---KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL  422 (567)
T ss_dssp             STTTTSSSCCCCHH---HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             ccCccceeccCChh---hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc
Confidence            56777888888887   356788888888888888875431                   000    11111        


Q ss_pred             --cc-------ccCcC-CCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccc
Q 045118           70 --IL-------SEYKF-PPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSML  139 (221)
Q Consensus        70 --lp-------~l~~~-~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~  139 (221)
                        ++       .+..+ +..|+.|++++|.+...+  .++.+++|+.|++++|.+..  +|.. ++.+++|+.|++++|.
T Consensus       423 ~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp--~~~~l~~L~~L~Ls~N~l~~--lp~~-~~~l~~L~~L~Ls~N~  497 (567)
T 1dce_A          423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRA--LPPA-LAALRCLEVLQASDNA  497 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCC--CGGGGTTCCEEECCSSCCCC--CCGG-GGGCTTCCEEECCSSC
T ss_pred             chhhhhhhhcccccccCccCceEEEecCCCCCCCc--CccccccCcEeecCcccccc--cchh-hhcCCCCCEEECCCCC
Confidence              00       11111 146899999999998764  48899999999999998874  6666 8889999999999998


Q ss_pred             cccceeeCCCCCCCccEEEecCCccccCc--chhhccCCcCcEEEccCCC
Q 045118          140 WLEEWTMGAGAMPKLESLILNPCAYLRKL--PEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       140 ~l~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~~l~~L~~l~l~~~~  187 (221)
                       ++++| .++.+++|+.|++++ +.++.+  |..++.+++|+.|++.+++
T Consensus       498 -l~~lp-~l~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          498 -LENVD-GVANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGNS  544 (567)
T ss_dssp             -CCCCG-GGTTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             -CCCCc-ccCCCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence             88887 788899999999998 456766  8889999999999999875

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.22  E-value=9.7e-11  Score=99.28  Aligned_cols=32  Identities=16%  Similarity=0.197  Sum_probs=20.5

Q ss_pred             CCccEEEEEecCCccccchhHhhccCCCCcEEEeee
Q 045118           24 PNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVN   59 (221)
Q Consensus        24 ~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~   59 (221)
                      ++|++|+++++.   ...+| .++++++|++|++++
T Consensus       131 ~~L~~L~L~~n~---l~~lp-~~~~l~~L~~L~l~~  162 (454)
T 1jl5_A          131 PLLEYLGVSNNQ---LEKLP-ELQNSSFLKIIDVDN  162 (454)
T ss_dssp             TTCCEEECCSSC---CSSCC-CCTTCTTCCEEECCS
T ss_pred             CCCCEEECcCCC---CCCCc-ccCCCCCCCEEECCC
Confidence            567777777764   23355 466777777777766

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.22  E-value=9.5e-14  Score=104.83  Aligned_cols=132  Identities=21%  Similarity=0.234  Sum_probs=93.4

Q ss_pred             ccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCce
Q 045118           39 HSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERK  118 (221)
Q Consensus        39 ~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  118 (221)
                      ...+|..+.++++|++|+++++    .+.. +|.+..+ ++|+.|++++|.+...+ ..++.+++|++|++++|.+..  
T Consensus        37 l~~l~~~~~~l~~L~~L~ls~n----~l~~-l~~~~~l-~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~N~l~~--  107 (198)
T 1ds9_A           37 IEKMDATLSTLKACKHLALSTN----NIEK-ISSLSGM-ENLRILSLGRNLIKKIE-NLDAVADTLEELWISYNQIAS--  107 (198)
T ss_dssp             CCCCHHHHHHTTTCSEEECSEE----EESC-CCCHHHH-TTCCEEEEEEEEECSCS-SHHHHHHHCSEEEEEEEECCC--
T ss_pred             HhhhhHHHhcCCCCCEEECCCC----CCcc-ccccccC-CCCCEEECCCCCccccc-chhhcCCcCCEEECcCCcCCc--
Confidence            3455668888888888888874    3344 5666777 88888888888887554 456667888888888887765  


Q ss_pred             eeeeCCCCCCcccEEeccccccccceee--CCCCCCCccEEEecCCccccCcch----------hhccCCcCcEEE
Q 045118          119 LACVGCSSFSQLKILHLKSMLWLEEWTM--GAGAMPKLESLILNPCAYLRKLPE----------ELWCIKSLCKLE  182 (221)
Q Consensus       119 l~~~~~~~~~~L~~L~L~~~~~l~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~----------~~~~l~~L~~l~  182 (221)
                      ++ . +..+++|+.|++++|. +.+++.  .+..+++|+.|++++|......|.          .+..+++|+.++
T Consensus       108 l~-~-~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          108 LS-G-IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HH-H-HHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CC-c-cccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            33 3 5567888888888877 665543  456788888888888653222222          267788888886

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.21  E-value=1.2e-10  Score=95.23  Aligned_cols=176  Identities=20%  Similarity=0.165  Sum_probs=108.8

Q ss_pred             CcceeceecCCCC-Ch-hhcCCCCCccEEEEEecCC-c----------------------cccch-hHhhccCCCCcEEE
Q 045118            3 NLIFISALHPSSC-TP-DILGRLPNVRTFRISGDLS-Y----------------------YHSGV-SKSLCKLHKLECLK   56 (221)
Q Consensus         3 ~L~~L~~~~~~~~-~~-~~l~~l~~Lr~L~l~~~~~-~----------------------~~~~~-~~~l~~l~~L~~L~   56 (221)
                      ++++|..-..... ++ ..++++++|++|++++|.. .                      ....+ +..+.++++|++|+
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~  110 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  110 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence            4566654333322 33 3477888888888887751 0                      01112 34567777888888


Q ss_pred             eeecCc-e------e---eehhh----------cc--ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCcc
Q 045118           57 LVNKGK-M------W---QLSRM----------IL--SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSY  114 (221)
Q Consensus        57 l~~~~~-~------~---~L~~L----------lp--~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  114 (221)
                      ++++.- .      .   ++..+          +|  .+..++..++.|++++|.+...+...+ ...+|+.+.+.++..
T Consensus       111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~  189 (350)
T 4ay9_X          111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNN  189 (350)
T ss_dssp             EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTT
T ss_pred             ccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCc
Confidence            876310 0      0   11111          22  233332467778888888776543333 456788888865443


Q ss_pred             CCceeee-eCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccC
Q 045118          115 LERKLAC-VGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHW  185 (221)
Q Consensus       115 ~~~~l~~-~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~  185 (221)
                      ... ++. . +..+++|+.|+++++. ++.+|.  +.+..|++|.+.++..++.+| .+..+++|+.+++..
T Consensus       190 l~~-i~~~~-f~~l~~L~~LdLs~N~-l~~lp~--~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          190 LEE-LPNDV-FHGASGPVILDISRTR-IHSLPS--YGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY  255 (350)
T ss_dssp             CCC-CCTTT-TTTEECCSEEECTTSC-CCCCCS--SSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred             ccC-CCHHH-hccCcccchhhcCCCC-cCccCh--hhhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence            222 332 2 4567889999998887 787764  357888888888888888888 478889999998864

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.20  E-value=1.7e-10  Score=97.80  Aligned_cols=10  Identities=40%  Similarity=0.381  Sum_probs=6.2

Q ss_pred             CCCcEEEeee
Q 045118           50 HKLECLKLVN   59 (221)
Q Consensus        50 ~~L~~L~l~~   59 (221)
                      ++|++|++++
T Consensus       131 ~~L~~L~L~~  140 (454)
T 1jl5_A          131 PLLEYLGVSN  140 (454)
T ss_dssp             TTCCEEECCS
T ss_pred             CCCCEEECcC
Confidence            4666666665

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.19  E-value=5.3e-11  Score=89.45  Aligned_cols=9  Identities=22%  Similarity=0.420  Sum_probs=3.3

Q ss_pred             CcCcEEEcc
Q 045118          176 KSLCKLELH  184 (221)
Q Consensus       176 ~~L~~l~l~  184 (221)
                      ++|+++++.
T Consensus       126 ~~L~~L~L~  134 (193)
T 2wfh_A          126 SALSHLAIG  134 (193)
T ss_dssp             TTCCEEECC
T ss_pred             ccccEEEeC
Confidence            333333333

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.19  E-value=4.4e-11  Score=89.76  Aligned_cols=87  Identities=23%  Similarity=0.201  Sum_probs=46.7

Q ss_pred             cCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeCCCCC
Q 045118           73 EYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMGAGAM  151 (221)
Q Consensus        73 l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l  151 (221)
                      ++.+ ++|++|++++|.+....+..++.+++|++|++++|.+... .+.. +..+++|+.|+++++. +..+ +..++.+
T Consensus        50 ~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l  125 (192)
T 1w8a_A           50 FGRL-PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI-SNKM-FLGLHQLKTLNLYDNQ-ISCVMPGSFEHL  125 (192)
T ss_dssp             GGGC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEE-CSSS-STTCTTCCEEECCSSC-CCEECTTSSTTC
T ss_pred             cccC-CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCcc-CHHH-hcCCCCCCEEECCCCc-CCeeCHHHhhcC
Confidence            4555 5666666666666554444555666666666665554431 1112 3445566666666555 4444 3344455


Q ss_pred             CCccEEEecCCc
Q 045118          152 PKLESLILNPCA  163 (221)
Q Consensus       152 ~~L~~L~l~~~~  163 (221)
                      ++|++|++++++
T Consensus       126 ~~L~~L~L~~N~  137 (192)
T 1w8a_A          126 NSLTSLNLASNP  137 (192)
T ss_dssp             TTCCEEECTTCC
T ss_pred             CCCCEEEeCCCC
Confidence            566666665543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.19  E-value=5.3e-12  Score=106.65  Aligned_cols=107  Identities=25%  Similarity=0.257  Sum_probs=50.4

Q ss_pred             CCccEEEeecccCCCCCchhhc-----cCCCCcEEEecCCccCCce---eeeeCCCCCCcccEEeccccccccce-----
Q 045118           78 PSLTQLSLSNTELMEDPMPTLE-----KLPHLEVLKLKQNSYLERK---LACVGCSSFSQLKILHLKSMLWLEEW-----  144 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~---l~~~~~~~~~~L~~L~L~~~~~l~~~-----  144 (221)
                      ++|++|++++|.+.......+.     ..++|++|++++|.+....   ++.. +..+++|++|++++|. +.+.     
T Consensus       170 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~-l~~~~~~~l  247 (461)
T 1z7x_W          170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI-VASKASLRELALGSNK-LGDVGMAEL  247 (461)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH-HHHCTTCCEEECCSSB-CHHHHHHHH
T ss_pred             CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH-HHhCCCccEEeccCCc-CChHHHHHH
Confidence            4555555555544322222221     1345555555555443321   1112 2234566666666554 3322     


Q ss_pred             -eeCCCCCCCccEEEecCCccccC-----cchhhccCCcCcEEEccCCC
Q 045118          145 -TMGAGAMPKLESLILNPCAYLRK-----LPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       145 -~~~~~~l~~L~~L~l~~~~~l~~-----~~~~~~~l~~L~~l~l~~~~  187 (221)
                       +.....+++|++|++++| .++.     ++..+..+++|++|++.++.
T Consensus       248 ~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  295 (461)
T 1z7x_W          248 CPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE  295 (461)
T ss_dssp             HHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred             HHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence             111223566666666664 3333     34445556666666666654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.18  E-value=2.5e-11  Score=108.54  Aligned_cols=109  Identities=24%  Similarity=0.229  Sum_probs=70.9

Q ss_pred             ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCC
Q 045118           72 SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAM  151 (221)
Q Consensus        72 ~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l  151 (221)
                      .+..+ ++|+.|++++|.+...+ ..+..+++|++|++++|.+..  ++.. +..+++|+.|+|++|. ++.+|..++.+
T Consensus       219 ~~~~l-~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~--lp~~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l  292 (727)
T 4b8c_D          219 SKYDD-QLWHALDLSNLQIFNIS-ANIFKYDFLTRLYLNGNSLTE--LPAE-IKNLSNLRVLDLSHNR-LTSLPAELGSC  292 (727)
T ss_dssp             ---CC-CCCCEEECTTSCCSCCC-GGGGGCCSCSCCBCTTSCCSC--CCGG-GGGGTTCCEEECTTSC-CSSCCSSGGGG
T ss_pred             hhccC-CCCcEEECCCCCCCCCC-hhhcCCCCCCEEEeeCCcCcc--cChh-hhCCCCCCEEeCcCCc-CCccChhhcCC
Confidence            45556 67777777777766444 344467777777777776652  5544 5567777777777766 66666666667


Q ss_pred             CCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118          152 PKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       152 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      ++|+.|++++| .++.+|..++.+++|++|++.+++
T Consensus       293 ~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          293 FQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             TTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSC
T ss_pred             CCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCc
Confidence            77777777763 456667667777777777776654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.17  E-value=1.5e-10  Score=100.59  Aligned_cols=132  Identities=20%  Similarity=0.227  Sum_probs=93.3

Q ss_pred             CCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhhccCCC
Q 045118           24 PNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPH  103 (221)
Q Consensus        24 ~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~  103 (221)
                      ++|+.|++++|.   ...+|   ..+++|++|+++++    ++.. +|.   ++.+|+.|++++|.+...+.    .+++
T Consensus        80 ~~L~~L~Ls~N~---l~~ip---~~l~~L~~L~Ls~N----~l~~-ip~---l~~~L~~L~Ls~N~l~~lp~----~l~~  141 (571)
T 3cvr_A           80 PQITVLEITQNA---LISLP---ELPASLEYLDACDN----RLST-LPE---LPASLKHLDVDNNQLTMLPE----LPAL  141 (571)
T ss_dssp             TTCSEEECCSSC---CSCCC---CCCTTCCEEECCSS----CCSC-CCC---CCTTCCEEECCSSCCSCCCC----CCTT
T ss_pred             CCCCEEECcCCC---Ccccc---cccCCCCEEEccCC----CCCC-cch---hhcCCCEEECCCCcCCCCCC----cCcc
Confidence            678888888885   34556   45788888888874    2232 444   32488888888888876543    5788


Q ss_pred             CcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcC-----
Q 045118          104 LEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSL-----  178 (221)
Q Consensus       104 L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L-----  178 (221)
                      |+.|++++|.+..  ++.    .+++|+.|++++|. ++.++. ++  ++|+.|++++ +.++.+|. +..  +|     
T Consensus       142 L~~L~Ls~N~l~~--lp~----~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~~L~Ls~-N~L~~lp~-~~~--~L~~~~~  207 (571)
T 3cvr_A          142 LEYINADNNQLTM--LPE----LPTSLEVLSVRNNQ-LTFLPE-LP--ESLEALDVST-NLLESLPA-VPV--RNHHSEE  207 (571)
T ss_dssp             CCEEECCSSCCSC--CCC----CCTTCCEEECCSSC-CSCCCC-CC--TTCCEEECCS-SCCSSCCC-CC----------
T ss_pred             ccEEeCCCCccCc--CCC----cCCCcCEEECCCCC-CCCcch-hh--CCCCEEECcC-CCCCchhh-HHH--hhhcccc
Confidence            9999998887765  332    46789999998887 777766 44  8899999998 46677776 543  66     


Q ss_pred             --cEEEccCCC
Q 045118          179 --CKLELHWPQ  187 (221)
Q Consensus       179 --~~l~l~~~~  187 (221)
                        ++|++.++.
T Consensus       208 ~L~~L~Ls~N~  218 (571)
T 3cvr_A          208 TEIFFRCRENR  218 (571)
T ss_dssp             CCEEEECCSSC
T ss_pred             cceEEecCCCc
Confidence              888888765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.17  E-value=1.9e-11  Score=100.55  Aligned_cols=40  Identities=20%  Similarity=0.355  Sum_probs=23.3

Q ss_pred             hhcCCCC-CccEEEEEecCCccccchhHhhccC-----CCCcEEEeee
Q 045118           18 DILGRLP-NVRTFRISGDLSYYHSGVSKSLCKL-----HKLECLKLVN   59 (221)
Q Consensus        18 ~~l~~l~-~Lr~L~l~~~~~~~~~~~~~~l~~l-----~~L~~L~l~~   59 (221)
                      ..+.+++ +|++|++++|.  .....+..+..+     ++|++|++++
T Consensus        44 ~~l~~~~~~L~~L~Ls~N~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~   89 (362)
T 3goz_A           44 QAFANTPASVTSLNLSGNS--LGFKNSDELVQILAAIPANVTSLNLSG   89 (362)
T ss_dssp             HHHHTCCTTCCEEECCSSC--GGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred             HHHHhCCCceeEEECcCCC--CCHHHHHHHHHHHhccCCCccEEECcC
Confidence            4455666 67777777765  333334444433     6677777766

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.16  E-value=3.8e-10  Score=99.07  Aligned_cols=52  Identities=25%  Similarity=0.191  Sum_probs=32.6

Q ss_pred             CcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118          128 SQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       128 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      ++|+.|++++|. ++.++   ..+++|+.|++++| .++.+|.   .+++|++|++.++.
T Consensus       221 ~~L~~L~Ls~N~-L~~lp---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~  272 (622)
T 3g06_A          221 SGLKELIVSGNR-LTSLP---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQ  272 (622)
T ss_dssp             TTCCEEECCSSC-CSCCC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC
T ss_pred             CCCCEEEccCCc-cCcCC---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCC
Confidence            456666666654 55544   34567777777763 5556664   56677777777764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.13  E-value=3.7e-11  Score=107.44  Aligned_cols=113  Identities=25%  Similarity=0.253  Sum_probs=86.5

Q ss_pred             chhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCcee
Q 045118           41 GVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKL  119 (221)
Q Consensus        41 ~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l  119 (221)
                      ..+..+..+++|+.|+++++    .+.. +| .+..+ ++|+.|++++|.+...+ ..++.+++|++|++++|.+..  +
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n----~l~~-l~~~~~~l-~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~--l  285 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNL----QIFN-ISANIFKY-DFLTRLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTS--L  285 (727)
T ss_dssp             -------CCCCCCEEECTTS----CCSC-CCGGGGGC-CSCSCCBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCSS--C
T ss_pred             cChhhhccCCCCcEEECCCC----CCCC-CChhhcCC-CCCCEEEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCCc--c
Confidence            45677888999999999874    2233 55 56678 89999999999988554 678889999999999988773  6


Q ss_pred             eeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCcc
Q 045118          120 ACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAY  164 (221)
Q Consensus       120 ~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~  164 (221)
                      |.. ++.+++|+.|+|++|. +..+|..++.+++|+.|++++|.-
T Consensus       286 p~~-~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          286 PAE-LGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             CSS-GGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCC
T ss_pred             Chh-hcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCcc
Confidence            666 7788999999999887 788888888899999999998653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.13  E-value=5.2e-12  Score=106.67  Aligned_cols=59  Identities=27%  Similarity=0.258  Sum_probs=36.0

Q ss_pred             CCcccEEecccccccccee-e----CCC-CCCCccEEEecCCcccc-----CcchhhccCCcCcEEEccCCC
Q 045118          127 FSQLKILHLKSMLWLEEWT-M----GAG-AMPKLESLILNPCAYLR-----KLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       127 ~~~L~~L~L~~~~~l~~~~-~----~~~-~l~~L~~L~l~~~~~l~-----~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      +++|+.|++++|. +.+.. .    .+. ..++|++|++++|. ++     .+|..+..+++|++|++.+++
T Consensus       340 ~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          340 NRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             CSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             CCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            4666677766664 33321 1    111 25677888887753 33     456667778888888887765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.11  E-value=3.5e-10  Score=84.78  Aligned_cols=106  Identities=24%  Similarity=0.229  Sum_probs=87.7

Q ss_pred             CCccEEEeecccCCCCCch-hhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCCCCCcc
Q 045118           78 PSLTQLSLSNTELMEDPMP-TLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGAMPKLE  155 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~  155 (221)
                      .+++.|++++|.+...+.. .++.+++|++|++++|.+.+. .+.. +..+++|+.|+++++. ++.++.. ++.+++|+
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~  105 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNA-FEGASHIQELQLGENK-IKEISNKMFLGLHQLK  105 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTT-TTTCTTCCEEECCSCC-CCEECSSSSTTCTTCC
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhH-cCCcccCCEEECCCCc-CCccCHHHhcCCCCCC
Confidence            6899999999999876643 488999999999999988753 2445 7789999999999998 7877544 67899999


Q ss_pred             EEEecCCccccCc-chhhccCCcCcEEEccCCC
Q 045118          156 SLILNPCAYLRKL-PEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       156 ~L~l~~~~~l~~~-~~~~~~l~~L~~l~l~~~~  187 (221)
                      +|++++|. ++.+ |..+..+++|+++++.+++
T Consensus       106 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A          106 TLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             EEECCSSC-CCEECTTSSTTCTTCCEEECTTCC
T ss_pred             EEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCC
Confidence            99999954 5544 6778899999999999875

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.11  E-value=4.4e-10  Score=84.41  Aligned_cols=124  Identities=17%  Similarity=0.164  Sum_probs=97.3

Q ss_pred             cEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhhccCCCCc
Q 045118           27 RTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLE  105 (221)
Q Consensus        27 r~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  105 (221)
                      +.++.+++   ....+|..+.  ++|++|+++++    +++. +| .+..+ ++|+.|++++|.+...+...++.+++|+
T Consensus        13 ~~l~~~~~---~l~~ip~~~~--~~l~~L~L~~n----~i~~-ip~~~~~l-~~L~~L~Ls~N~i~~i~~~~f~~l~~L~   81 (193)
T 2wfh_A           13 TVVRCSNK---GLKVLPKGIP--RDVTELYLDGN----QFTL-VPKELSNY-KHLTLIDLSNNRISTLSNQSFSNMTQLL   81 (193)
T ss_dssp             TEEECTTS---CCSSCCSCCC--TTCCEEECCSS----CCCS-CCGGGGGC-TTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CEEEcCCC---CCCcCCCCCC--CCCCEEECCCC----cCch-hHHHhhcc-cCCCEEECCCCcCCEeCHhHccCCCCCC
Confidence            45666555   3456665443  68999999985    2343 66 78888 9999999999999988777899999999


Q ss_pred             EEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCCCCCccEEEecCCcc
Q 045118          106 VLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAY  164 (221)
Q Consensus       106 ~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~  164 (221)
                      +|++++|.+... .+.. +..+++|+.|+++++. +..++.. +..+++|+.|++.+++.
T Consensus        82 ~L~Ls~N~l~~i-~~~~-f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           82 TLILSYNRLRCI-PPRT-FDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             EEECCSSCCCBC-CTTT-TTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             EEECCCCccCEe-CHHH-hCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence            999999987653 2223 6678999999999988 7877654 67799999999998653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.11  E-value=1.8e-10  Score=100.19  Aligned_cols=120  Identities=23%  Similarity=0.228  Sum_probs=94.4

Q ss_pred             CCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcc
Q 045118           51 KLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQL  130 (221)
Q Consensus        51 ~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L  130 (221)
                      .|+.|+++++    .+.. +|.++.+ ++|+.|++++|.+...+ ..++.+++|+.|++++|.+.+  ++ . ++.+++|
T Consensus       442 ~L~~L~Ls~n----~l~~-lp~~~~l-~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~--lp-~-l~~l~~L  510 (567)
T 1dce_A          442 DVRVLHLAHK----DLTV-LCHLEQL-LLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALEN--VD-G-VANLPRL  510 (567)
T ss_dssp             TCSEEECTTS----CCSS-CCCGGGG-TTCCEEECCSSCCCCCC-GGGGGCTTCCEEECCSSCCCC--CG-G-GTTCSSC
T ss_pred             CceEEEecCC----CCCC-CcCcccc-ccCcEeecCcccccccc-hhhhcCCCCCEEECCCCCCCC--Cc-c-cCCCCCC
Confidence            3445555542    2333 6778888 99999999999999664 689999999999999999876  56 5 7889999


Q ss_pred             cEEeccccccccce--eeCCCCCCCccEEEecCCccccCcchh----hccCCcCcEEEc
Q 045118          131 KILHLKSMLWLEEW--TMGAGAMPKLESLILNPCAYLRKLPEE----LWCIKSLCKLEL  183 (221)
Q Consensus       131 ~~L~L~~~~~l~~~--~~~~~~l~~L~~L~l~~~~~l~~~~~~----~~~l~~L~~l~l  183 (221)
                      +.|++++|. ++++  |..++.+++|+.|++++| .+...|..    +..+|+|+.|++
T Consensus       511 ~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          511 QELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             cEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence            999999998 7877  778889999999999995 45555432    345888888753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.11  E-value=3.3e-10  Score=83.63  Aligned_cols=106  Identities=28%  Similarity=0.340  Sum_probs=52.4

Q ss_pred             CCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCCCCCccE
Q 045118           78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGAMPKLES  156 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~  156 (221)
                      ++|+.|++++|.+...+...++.+++|++|++++|.+..  ++...+..+++|+.|+++++. ++.++.. ++.+++|+.
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~  104 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS--LPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKE  104 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE--eChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCE
Confidence            455555555555554443344555555555555554432  221102345555555555554 4444332 344555666


Q ss_pred             EEecCCccccCcchh-hccCCcCcEEEccCCC
Q 045118          157 LILNPCAYLRKLPEE-LWCIKSLCKLELHWPQ  187 (221)
Q Consensus       157 L~l~~~~~l~~~~~~-~~~l~~L~~l~l~~~~  187 (221)
                      |++++| .++.+|.. +..+++|+++++.+++
T Consensus       105 L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          105 LALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             EECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence            666553 34444433 3455566666665544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.10  E-value=5.4e-10  Score=82.49  Aligned_cols=124  Identities=23%  Similarity=0.280  Sum_probs=94.6

Q ss_pred             cEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCCCchhhccCCCC
Q 045118           27 RTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHL  104 (221)
Q Consensus        27 r~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L  104 (221)
                      +.++.+.+.   ...+|..+  .++|++|+++++    +++. +|  .+..+ ++|++|++++|.+...+...++.+++|
T Consensus        10 ~~l~~~~~~---l~~~p~~~--~~~l~~L~l~~n----~l~~-~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L   78 (177)
T 2o6r_A           10 TEIRCNSKG---LTSVPTGI--PSSATRLELESN----KLQS-LPHGVFDKL-TQLTKLSLSQNQIQSLPDGVFDKLTKL   78 (177)
T ss_dssp             TEEECCSSC---CSSCCTTC--CTTCSEEECCSS----CCCC-CCTTTTTTC-TTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CEEEecCCC---CccCCCCC--CCCCcEEEeCCC----cccE-eCHHHhcCc-ccccEEECCCCcceEeChhHccCCCcc
Confidence            456666553   44555433  379999999984    2333 34  56888 999999999999998776678899999


Q ss_pred             cEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCCCCCccEEEecCCcc
Q 045118          105 EVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAY  164 (221)
Q Consensus       105 ~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~  164 (221)
                      ++|++++|.+..  ++...+..+++|+.|+++++. ++.++.. +..+++|++|++++|+.
T Consensus        79 ~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           79 TILYLHENKLQS--LPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             CEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CEEECCCCCccc--cCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCe
Confidence            999999998775  332214678999999999987 7878665 46799999999999654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.09  E-value=3e-11  Score=99.36  Aligned_cols=95  Identities=18%  Similarity=0.161  Sum_probs=57.3

Q ss_pred             ChhhcCCCCCccEEEEEecCCccccchh----HhhccCC-CCcEEEeeecCceeeehhhcc-cc----CcCCCCccEEEe
Q 045118           16 TPDILGRLPNVRTFRISGDLSYYHSGVS----KSLCKLH-KLECLKLVNKGKMWQLSRMIL-SE----YKFPPSLTQLSL   85 (221)
Q Consensus        16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~----~~l~~l~-~L~~L~l~~~~~~~~L~~Llp-~l----~~~~~~L~~L~l   85 (221)
                      .+..+...++|++|+++++.  .....+    ..+.+++ +|++|+++++.    +....+ .+    ...+++|++|++
T Consensus        14 ~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~----l~~~~~~~l~~~l~~~~~~L~~L~L   87 (362)
T 3goz_A           14 VEEFTSIPHGVTSLDLSLNN--LYSISTVELIQAFANTPASVTSLNLSGNS----LGFKNSDELVQILAAIPANVTSLNL   87 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSC--GGGSCHHHHHHHHHTCCTTCCEEECCSSC----GGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred             HHHHHhCCCCceEEEccCCC--CChHHHHHHHHHHHhCCCceeEEECcCCC----CCHHHHHHHHHHHhccCCCccEEEC
Confidence            55556667779999999996  433333    7788898 99999999841    111101 11    111256666666


Q ss_pred             ecccCCCCCchhh----ccC-CCCcEEEecCCccCC
Q 045118           86 SNTELMEDPMPTL----EKL-PHLEVLKLKQNSYLE  116 (221)
Q Consensus        86 ~~~~~~~~~~~~l----~~l-~~L~~L~l~~~~~~~  116 (221)
                      ++|.+.......+    ..+ ++|++|++++|.+..
T Consensus        88 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  123 (362)
T 3goz_A           88 SGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS  123 (362)
T ss_dssp             CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred             cCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence            6666654443322    233 566666666666543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.08  E-value=1.7e-12  Score=97.96  Aligned_cols=129  Identities=21%  Similarity=0.193  Sum_probs=99.2

Q ss_pred             ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCC
Q 045118           16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDP   94 (221)
Q Consensus        16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~   94 (221)
                      ++..++.+++|++|+++++.   ...+| .+.++++|++|+++++    .+.. +| .+..+ ++|+.|++++|.+... 
T Consensus        40 l~~~~~~l~~L~~L~ls~n~---l~~l~-~~~~l~~L~~L~l~~n----~l~~-l~~~~~~~-~~L~~L~L~~N~l~~l-  108 (198)
T 1ds9_A           40 MDATLSTLKACKHLALSTNN---IEKIS-SLSGMENLRILSLGRN----LIKK-IENLDAVA-DTLEELWISYNQIASL-  108 (198)
T ss_dssp             CHHHHHHTTTCSEEECSEEE---ESCCC-CHHHHTTCCEEEEEEE----EECS-CSSHHHHH-HHCSEEEEEEEECCCH-
T ss_pred             hhHHHhcCCCCCEEECCCCC---Ccccc-ccccCCCCCEEECCCC----Cccc-ccchhhcC-CcCCEEECcCCcCCcC-
Confidence            33488999999999999995   44466 8899999999999985    3344 56 55566 8999999999999864 


Q ss_pred             chhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceee-----------CCCCCCCccEEE
Q 045118           95 MPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTM-----------GAGAMPKLESLI  158 (221)
Q Consensus        95 ~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~-----------~~~~l~~L~~L~  158 (221)
                       +.++.+++|++|++++|.+........ +..+++|+.|++.+|+ +.....           .+..+++|+.|+
T Consensus       109 -~~~~~l~~L~~L~l~~N~i~~~~~~~~-l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          109 -SGIEKLVNLRVLYMSNNKITNWGEIDK-LAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             -HHHHHHHHSSEEEESEEECCCHHHHHH-HTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             -CccccCCCCCEEECCCCcCCchhHHHH-HhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEEC
Confidence             478889999999999988765211123 5679999999999987 433321           145688999887

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.96  E-value=1.9e-10  Score=100.01  Aligned_cols=112  Identities=13%  Similarity=0.121  Sum_probs=57.0

Q ss_pred             CCCCCccEEEEEecCCccccchhHhhc-cCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhh
Q 045118           21 GRLPNVRTFRISGDLSYYHSGVSKSLC-KLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTL   98 (221)
Q Consensus        21 ~~l~~Lr~L~l~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l   98 (221)
                      ..+++|++|+++++.  ..+..+..+. .+++|++|+++++... .-.. ++ ....+ ++|++|++++|.+......++
T Consensus       102 ~~~~~L~~L~L~~~~--~~~~~~~~l~~~~~~L~~L~L~~~~~~-~~~~-l~~~~~~~-~~L~~L~L~~~~i~~~~~~~l  176 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMV--VTDDCLELIAKSFKNFKVLVLSSCEGF-STDG-LAAIAATC-RNLKELDLRESDVDDVSGHWL  176 (594)
T ss_dssp             HHCTTCCEEEEESCB--CCHHHHHHHHHHCTTCCEEEEESCEEE-EHHH-HHHHHHHC-TTCCEEECTTCEEECCCGGGG
T ss_pred             HhCCCCCeEEeeCcE--EcHHHHHHHHHhCCCCcEEeCCCcCCC-CHHH-HHHHHHhC-CCCCEEeCcCCccCCcchHHH
Confidence            356778888887775  4444455554 5778888887752100 0000 22 22345 667777777666554333333


Q ss_pred             c----cCCCCcEEEecCCc--cCCceeeeeCCCCCCcccEEecccc
Q 045118           99 E----KLPHLEVLKLKQNS--YLERKLACVGCSSFSQLKILHLKSM  138 (221)
Q Consensus        99 ~----~l~~L~~L~l~~~~--~~~~~l~~~~~~~~~~L~~L~L~~~  138 (221)
                      .    .+++|+.|+++.+.  +....+... ...+++|+.|++.+|
T Consensus       177 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l-~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          177 SHFPDTYTSLVSLNISCLASEVSFSALERL-VTRCPNLKSLKLNRA  221 (594)
T ss_dssp             GGSCTTCCCCCEEECTTCCSCCCHHHHHHH-HHHCTTCCEEECCTT
T ss_pred             HHHhhcCCcCcEEEecccCCcCCHHHHHHH-HHhCCCCcEEecCCC
Confidence            2    44566666665554  111111111 122456666666554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.96  E-value=3.3e-10  Score=98.48  Aligned_cols=36  Identities=22%  Similarity=0.225  Sum_probs=21.3

Q ss_pred             CCCCccEEEEEecCCccccchhHhhccC--CCCcEEEeee
Q 045118           22 RLPNVRTFRISGDLSYYHSGVSKSLCKL--HKLECLKLVN   59 (221)
Q Consensus        22 ~l~~Lr~L~l~~~~~~~~~~~~~~l~~l--~~L~~L~l~~   59 (221)
                      .+++|++|+++++.  ..+..+..+...  .+|++|++++
T Consensus       110 ~~~~L~~L~L~~~~--i~~~~~~~l~~~~~~~L~~L~L~~  147 (592)
T 3ogk_B          110 NLRQLKSVHFRRMI--VSDLDLDRLAKARADDLETLKLDK  147 (592)
T ss_dssp             HCTTCCEEEEESCB--CCHHHHHHHHHHHGGGCCEEEEES
T ss_pred             hCCCCCeEEeeccE--ecHHHHHHHHHhccccCcEEECcC
Confidence            57777777777764  434444444442  3377777765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.92  E-value=5.2e-10  Score=97.25  Aligned_cols=158  Identities=18%  Similarity=0.143  Sum_probs=75.7

Q ss_pred             cCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCce---------e----eehhh---------cc-ccCcC
Q 045118           20 LGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKM---------W----QLSRM---------IL-SEYKF   76 (221)
Q Consensus        20 l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~---------~----~L~~L---------lp-~l~~~   76 (221)
                      ++++++|+.|+++++.   ...++..+.++++|++|+++.....         +    +|+.+         +| .+..+
T Consensus       216 ~~~~~~L~~L~L~~~~---~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~  292 (592)
T 3ogk_B          216 ARNCRSLVSVKVGDFE---ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA  292 (592)
T ss_dssp             HHHCTTCCEEECSSCB---GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGG
T ss_pred             HhhCCCCcEEeccCcc---HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhc
Confidence            3456666666666652   3345566666666666666531000         0    11111         22 23334


Q ss_pred             CCCccEEEeecccCCCCCc-hhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccc----------cccccce-
Q 045118           77 PPSLTQLSLSNTELMEDPM-PTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKS----------MLWLEEW-  144 (221)
Q Consensus        77 ~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~----------~~~l~~~-  144 (221)
                       ++|++|++++|.+..... ..++.+++|+.|+++ +.+....++.. ...+++|++|++.+          |..+... 
T Consensus       293 -~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~-~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~  369 (592)
T 3ogk_B          293 -AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVL-AQYCKQLKRLRIERGADEQGMEDEEGLVSQRG  369 (592)
T ss_dssp             -GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHH-HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH
T ss_pred             -CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHH-HHhCCCCCEEEeecCccccccccccCccCHHH
Confidence             566666666665432222 124556666666664 33332223222 23456666666663          4333321 


Q ss_pred             -eeCCCCCCCccEEEecCCccccCc-chhhcc-CCcCcEEEcc
Q 045118          145 -TMGAGAMPKLESLILNPCAYLRKL-PEELWC-IKSLCKLELH  184 (221)
Q Consensus       145 -~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~-l~~L~~l~l~  184 (221)
                       ......+++|++|++.. +.++.. +..+.. +++|++|++.
T Consensus       370 ~~~l~~~~~~L~~L~l~~-~~l~~~~~~~l~~~~~~L~~L~l~  411 (592)
T 3ogk_B          370 LIALAQGCQELEYMAVYV-SDITNESLESIGTYLKNLCDFRLV  411 (592)
T ss_dssp             HHHHHHHCTTCSEEEEEE-SCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred             HHHHHhhCccCeEEEeec-CCccHHHHHHHHhhCCCCcEEEEe
Confidence             11122366777777733 433322 223333 6777777775

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.86  E-value=2.2e-09  Score=88.34  Aligned_cols=170  Identities=19%  Similarity=0.195  Sum_probs=110.6

Q ss_pred             hcCCCCCccEEEEEecCCc---c----ccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCC
Q 045118           19 ILGRLPNVRTFRISGDLSY---Y----HSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELM   91 (221)
Q Consensus        19 ~l~~l~~Lr~L~l~~~~~~---~----~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~   91 (221)
                      .+.++++|+.|.+......   .    ...+...+..+++|+.|+++++..   ++  ++.+. + ++|++|++..|.+.
T Consensus       134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~---l~--l~~~~-~-~~L~~L~L~~~~l~  206 (362)
T 2ra8_A          134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN---LS--IGKKP-R-PNLKSLEIISGGLP  206 (362)
T ss_dssp             THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT---CB--CCSCB-C-TTCSEEEEECSBCC
T ss_pred             hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC---ce--ecccc-C-CCCcEEEEecCCCC
Confidence            3556899999998654210   0    124667778899999999988411   11  34433 6 89999999999886


Q ss_pred             CCCchhhc--cCCCCcEEEecCC--ccCCce-e---e-eeCCCCCCcccEEeccccccccce---eeCCCCCCCccEEEe
Q 045118           92 EDPMPTLE--KLPHLEVLKLKQN--SYLERK-L---A-CVGCSSFSQLKILHLKSMLWLEEW---TMGAGAMPKLESLIL  159 (221)
Q Consensus        92 ~~~~~~l~--~l~~L~~L~l~~~--~~~~~~-l---~-~~~~~~~~~L~~L~L~~~~~l~~~---~~~~~~l~~L~~L~l  159 (221)
                      ......++  .+|+|+.|+++.+  .+.++. +   . ......||+|+.|++.+|......   ....+.+|+|++|++
T Consensus       207 ~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdL  286 (362)
T 2ra8_A          207 DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDI  286 (362)
T ss_dssp             HHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEEC
T ss_pred             hHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEEC
Confidence            55445554  7999999998542  221110 1   1 110235899999999888722111   111246899999999


Q ss_pred             cCCccccC-----cchhhccCCcCcEEEccCCC--HHHHHHhhh
Q 045118          160 NPCAYLRK-----LPEELWCIKSLCKLELHWPQ--PELRQRLRA  196 (221)
Q Consensus       160 ~~~~~l~~-----~~~~~~~l~~L~~l~l~~~~--~~~~~~l~~  196 (221)
                      +.| .+..     ++.++.++++|+.|++..|.  ++....+.+
T Consensus       287 s~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~  329 (362)
T 2ra8_A          287 SAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK  329 (362)
T ss_dssp             CSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred             CCC-CCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence            874 4443     34456788999999998775  444444443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.84  E-value=5.2e-09  Score=76.85  Aligned_cols=82  Identities=20%  Similarity=0.207  Sum_probs=44.9

Q ss_pred             CCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCCCCCccE
Q 045118           78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGAMPKLES  156 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~  156 (221)
                      ++|+.|++++|.+...++..++.+++|++|++++|.+..  ++...+..+++|+.|+++++. ++.++.. ++.+++|+.
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~  106 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV--LPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTH  106 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc--cChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCE
Confidence            556666666666655544455566666666666555543  221103445666666666555 5555432 455666666


Q ss_pred             EEecCC
Q 045118          157 LILNPC  162 (221)
Q Consensus       157 L~l~~~  162 (221)
                      |+++++
T Consensus       107 L~L~~N  112 (170)
T 3g39_A          107 IWLLNN  112 (170)
T ss_dssp             EECCSS
T ss_pred             EEeCCC
Confidence            666654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.81  E-value=1.9e-08  Score=74.09  Aligned_cols=83  Identities=18%  Similarity=0.207  Sum_probs=56.8

Q ss_pred             CCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCCCCCccE
Q 045118           78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGAMPKLES  156 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~  156 (221)
                      ++|+.|++++|.+...++..++.+++|++|++++|.+..  ++..-+..+++|+.|+++++. ++.++.. ++.+++|+.
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~  109 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA--IPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTH  109 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSE
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc--cChhHhCCcchhhEEECCCCc-cceeCHHHhccccCCCE
Confidence            677888888887777665667777788888887777654  332203467777777777776 6666544 566777777


Q ss_pred             EEecCCc
Q 045118          157 LILNPCA  163 (221)
Q Consensus       157 L~l~~~~  163 (221)
                      |++++++
T Consensus       110 L~L~~N~  116 (174)
T 2r9u_A          110 IYLYNNP  116 (174)
T ss_dssp             EECCSSC
T ss_pred             EEeCCCC
Confidence            7777743

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.79  E-value=2.4e-08  Score=73.26  Aligned_cols=102  Identities=25%  Similarity=0.243  Sum_probs=82.3

Q ss_pred             CccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCCCCCccEE
Q 045118           79 SLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGAMPKLESL  157 (221)
Q Consensus        79 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L  157 (221)
                      ..+.++++++.+...+. .+  .+++++|++++|.+... .+.. +..+++|+.|+++++. ++.++.. +..+++|+.|
T Consensus        10 ~~~~l~~s~n~l~~ip~-~~--~~~l~~L~L~~N~i~~~-~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L   83 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPT-GI--PTTTQVLYLYDNQITKL-EPGV-FDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQL   83 (170)
T ss_dssp             ETTEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCCCC-CTTT-TTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred             CCCEEEeCCCCcCccCc-cC--CCCCcEEEcCCCcCCcc-Chhh-hcCcccCCEEECCCCC-cCccChhhccCCCCCCEE
Confidence            45789999999887652 33  48999999999988763 2334 6689999999999998 8888654 5789999999


Q ss_pred             EecCCccccCcch-hhccCCcCcEEEccCCC
Q 045118          158 ILNPCAYLRKLPE-ELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       158 ~l~~~~~l~~~~~-~~~~l~~L~~l~l~~~~  187 (221)
                      ++++ +.++.+|. .+..+++|++|++.+++
T Consensus        84 ~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           84 SLND-NQLKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             ECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECCC-CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence            9999 56777766 48899999999999875

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.78  E-value=1.8e-08  Score=74.28  Aligned_cols=100  Identities=18%  Similarity=0.179  Sum_probs=53.9

Q ss_pred             cEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhhccCCCCc
Q 045118           27 RTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLE  105 (221)
Q Consensus        27 r~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  105 (221)
                      +.++++++.   ...+|..+.  ++|++|+++++    +++.+.| .+..+ ++|+.|++++|.+...+...++.+++|+
T Consensus        15 ~~l~~~~n~---l~~iP~~~~--~~L~~L~Ls~N----~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~i~~~~~~~l~~L~   84 (174)
T 2r9u_A           15 TLVNCQNIR---LASVPAGIP--TDKQRLWLNNN----QITKLEPGVFDHL-VNLQQLYFNSNKLTAIPTGVFDKLTQLT   84 (174)
T ss_dssp             SEEECCSSC---CSSCCSCCC--TTCSEEECCSS----CCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cEEEeCCCC---CCccCCCcC--CCCcEEEeCCC----CccccCHHHhcCC-cCCCEEECCCCCCCccChhHhCCcchhh
Confidence            345555552   344454432  56666666653    2233223 45556 6666666666666655544455666666


Q ss_pred             EEEecCCccCCceeee-eCCCCCCcccEEeccccc
Q 045118          106 VLKLKQNSYLERKLAC-VGCSSFSQLKILHLKSML  139 (221)
Q Consensus       106 ~L~l~~~~~~~~~l~~-~~~~~~~~L~~L~L~~~~  139 (221)
                      +|++++|.+..  ++. . +..+++|+.|++++++
T Consensus        85 ~L~L~~N~l~~--l~~~~-~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           85 QLDLNDNHLKS--IPRGA-FDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             EEECCSSCCCC--CCTTT-TTTCTTCSEEECCSSC
T ss_pred             EEECCCCccce--eCHHH-hccccCCCEEEeCCCC
Confidence            66666665543  221 2 3445666666666655

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.78  E-value=9.1e-10  Score=95.70  Aligned_cols=86  Identities=10%  Similarity=0.107  Sum_probs=50.7

Q ss_pred             hccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce--eeCCCCCCCccEEEecCCccccCc--chhhc
Q 045118           98 LEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW--TMGAGAMPKLESLILNPCAYLRKL--PEELW  173 (221)
Q Consensus        98 l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~--~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~  173 (221)
                      +..+++|+.|++++ .+....+... ...+++|+.|++.+|. +.+.  ......+++|+.|++++|.. ...  ...+.
T Consensus       428 ~~~~~~L~~L~L~~-~l~~~~~~~l-~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~  503 (594)
T 2p1m_B          428 VEHCKDLRRLSLSG-LLTDKVFEYI-GTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANAS  503 (594)
T ss_dssp             HHHCTTCCEEECCS-SCCHHHHHHH-HHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGG
T ss_pred             HhhCCCccEEeecC-cccHHHHHHH-HHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHH
Confidence            34556666666643 3322212211 1126778888887776 4322  11113478999999998775 322  22345


Q ss_pred             cCCcCcEEEccCCC
Q 045118          174 CIKSLCKLELHWPQ  187 (221)
Q Consensus       174 ~l~~L~~l~l~~~~  187 (221)
                      .+++|++|++.+|+
T Consensus       504 ~l~~L~~L~l~~~~  517 (594)
T 2p1m_B          504 KLETMRSLWMSSCS  517 (594)
T ss_dssp             GGGGSSEEEEESSC
T ss_pred             hCCCCCEEeeeCCC
Confidence            68899999999887

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.69  E-value=8e-08  Score=77.75  Aligned_cols=99  Identities=18%  Similarity=0.103  Sum_probs=72.1

Q ss_pred             CCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeee-eCCCCCCccc-EEecccccccccee-eCCCCCCCc
Q 045118           78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLAC-VGCSSFSQLK-ILHLKSMLWLEEWT-MGAGAMPKL  154 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~-~~~~~~~~L~-~L~L~~~~~l~~~~-~~~~~l~~L  154 (221)
                      ++|+.+++.+|.+...+..++..+++|+.+.+..| +..  ++. . +.++++|+ .+.+.+  .++.++ .++..+++|
T Consensus       226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~--I~~~a-F~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L  299 (329)
T 3sb4_A          226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKT--IGQRV-FSNCGRLAGTLELPA--SVTAIEFGAFMGCDNL  299 (329)
T ss_dssp             TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCE--ECTTT-TTTCTTCCEEEEECT--TCCEECTTTTTTCTTE
T ss_pred             CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cce--ehHHH-hhCChhccEEEEEcc--cceEEchhhhhCCccC
Confidence            78888998888888777778888889999988665 322  222 3 55677888 888876  366664 456678888


Q ss_pred             cEEEecCCccccCcch-hhccCCcCcEEEc
Q 045118          155 ESLILNPCAYLRKLPE-ELWCIKSLCKLEL  183 (221)
Q Consensus       155 ~~L~l~~~~~l~~~~~-~~~~l~~L~~l~l  183 (221)
                      +.+++.+ +.+..++. .+.++++|++++.
T Consensus       300 ~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          300 RYVLATG-DKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred             CEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence            8888876 55666654 5778888888764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.64  E-value=5.1e-08  Score=79.35  Aligned_cols=91  Identities=23%  Similarity=0.182  Sum_probs=62.7

Q ss_pred             ChhhcCCCCCccEEEEEe-cCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCC
Q 045118           16 TPDILGRLPNVRTFRISG-DLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMED   93 (221)
Q Consensus        16 ~~~~l~~l~~Lr~L~l~~-~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~   93 (221)
                      +|. +..+++|+.|++++ |.  .....+..|.++++|+.|+++++    +|+.+.| .+..+ ++|+.|++++|.+...
T Consensus        24 ip~-l~~~~~L~~L~l~~~n~--l~~~~~~~~~~l~~L~~L~l~~N----~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~   95 (347)
T 2ifg_A           24 LHH-LPGAENLTELYIENQQH--LQHLELRDLRGLGELRNLTIVKS----GLRFVAPDAFHFT-PRLSRLNLSFNALESL   95 (347)
T ss_dssp             TTT-SCSCSCCSEEECCSCSS--CCEECGGGSCSCCCCSEEECCSS----CCCEECTTGGGSC-SCCCEEECCSSCCSCC
T ss_pred             cCC-CCCCCCeeEEEccCCCC--CCCcChhHhccccCCCEEECCCC----ccceeCHHHhcCC-cCCCEEeCCCCcccee
Confidence            555 77888888888875 64  33333466788888888888774    3344233 56777 7888888888888776


Q ss_pred             CchhhccCCCCcEEEecCCccC
Q 045118           94 PMPTLEKLPHLEVLKLKQNSYL  115 (221)
Q Consensus        94 ~~~~l~~l~~L~~L~l~~~~~~  115 (221)
                      +...+..++ |+.|++.+|.+.
T Consensus        96 ~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           96 SWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CSTTTCSCC-CCEEECCSSCCC
T ss_pred             CHHHcccCC-ceEEEeeCCCcc
Confidence            655555555 888888777654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.61  E-value=1.1e-09  Score=90.54  Aligned_cols=154  Identities=18%  Similarity=0.118  Sum_probs=75.9

Q ss_pred             CCccEEEEEecCCccccc----hhHhhcc-CCCCcEEEeeecCceeeehhh-cc-ccCcCCCCccEEEeecccCCCCCch
Q 045118           24 PNVRTFRISGDLSYYHSG----VSKSLCK-LHKLECLKLVNKGKMWQLSRM-IL-SEYKFPPSLTQLSLSNTELMEDPMP   96 (221)
Q Consensus        24 ~~Lr~L~l~~~~~~~~~~----~~~~l~~-l~~L~~L~l~~~~~~~~L~~L-lp-~l~~~~~~L~~L~l~~~~~~~~~~~   96 (221)
                      ++|++|+++++.  ....    +...+.. .++|++|+++++.    +..- +. ....+ ++|+.|++++|.+...+..
T Consensus        72 ~~L~~L~Ls~n~--l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~----l~~~~~~~l~~~L-~~L~~L~Ls~n~l~~~~~~  144 (372)
T 3un9_A           72 SSLRQLNLAGVR--MTPVKCTVVAAVLGSGRHALDEVNLASCQ----LDPAGLRTLLPVF-LRARKLGLQLNSLGPEACK  144 (372)
T ss_dssp             TTCCEEECTTSC--CCHHHHHHHHHHHSSCSSCEEEEECTTCC----CCHHHHHHTHHHH-HTEEEEECCSSCCCHHHHH
T ss_pred             hhCCEEEecCCC--CCHHHHHHHHHHHhhCCCCceEEEecCCC----CCHHHHHHHHHHH-HhccHhhcCCCCCCHHHHH
Confidence            456777777665  2222    2222222 2577777776631    0100 11 11223 5666777777666543333


Q ss_pred             hh-----ccCCCCcEEEecCCccCCce---eeeeCCCCCCcccEEeccccccccce-----eeCCCCCCCccEEEecCCc
Q 045118           97 TL-----EKLPHLEVLKLKQNSYLERK---LACVGCSSFSQLKILHLKSMLWLEEW-----TMGAGAMPKLESLILNPCA  163 (221)
Q Consensus        97 ~l-----~~l~~L~~L~l~~~~~~~~~---l~~~~~~~~~~L~~L~L~~~~~l~~~-----~~~~~~l~~L~~L~l~~~~  163 (221)
                      .+     ...++|++|++++|.+....   +... +...++|++|+|++|. +.+.     ...+...++|+.|++++|.
T Consensus       145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~  222 (372)
T 3un9_A          145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG-LAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG  222 (372)
T ss_dssp             HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH-HHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred             HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH-HhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence            33     23456777777666553311   1111 2345666777776665 3322     2223345566777776643


Q ss_pred             ccc-----CcchhhccCCcCcEEEccCCC
Q 045118          164 YLR-----KLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       164 ~l~-----~~~~~~~~l~~L~~l~l~~~~  187 (221)
                       ++     .++..+...++|++|++.+++
T Consensus       223 -i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          223 -AGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             -CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             -CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence             22     122234455666777766654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.57  E-value=9.5e-08  Score=77.71  Aligned_cols=92  Identities=21%  Similarity=0.182  Sum_probs=72.7

Q ss_pred             ccchhHhhccCCCCcEEEeee-cCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCC
Q 045118           39 HSGVSKSLCKLHKLECLKLVN-KGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLE  116 (221)
Q Consensus        39 ~~~~~~~l~~l~~L~~L~l~~-~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  116 (221)
                      ...+|. +..+++|++|++++ +    .++.+.+ .+..+ ++|+.|++++|.+...++..++.+++|++|++++|.+..
T Consensus        21 l~~ip~-l~~~~~L~~L~l~~~n----~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~   94 (347)
T 2ifg_A           21 LDSLHH-LPGAENLTELYIENQQ----HLQHLELRDLRGL-GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES   94 (347)
T ss_dssp             CTTTTT-SCSCSCCSEEECCSCS----SCCEECGGGSCSC-CCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC
T ss_pred             CCccCC-CCCCCCeeEEEccCCC----CCCCcChhHhccc-cCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccce
Confidence            566888 99999999999985 4    3444233 68889 999999999999998777788999999999999998875


Q ss_pred             ceeeeeCCCCCCcccEEeccccc
Q 045118          117 RKLACVGCSSFSQLKILHLKSML  139 (221)
Q Consensus       117 ~~l~~~~~~~~~~L~~L~L~~~~  139 (221)
                        ++..-+..++ |+.|++.+++
T Consensus        95 --~~~~~~~~~~-L~~l~l~~N~  114 (347)
T 2ifg_A           95 --LSWKTVQGLS-LQELVLSGNP  114 (347)
T ss_dssp             --CCSTTTCSCC-CCEEECCSSC
T ss_pred             --eCHHHcccCC-ceEEEeeCCC
Confidence              4432022333 9999998876

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.55  E-value=3.2e-08  Score=72.81  Aligned_cols=88  Identities=13%  Similarity=0.130  Sum_probs=60.7

Q ss_pred             CccEEEeecccCCCCCchhhccCCCCcEEEecCCc-cCCceeeeeCCCCC----CcccEEecccccccccee-eCCCCCC
Q 045118           79 SLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNS-YLERKLACVGCSSF----SQLKILHLKSMLWLEEWT-MGAGAMP  152 (221)
Q Consensus        79 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~l~~~~~~~~----~~L~~L~L~~~~~l~~~~-~~~~~l~  152 (221)
                      +|+.|++++|.++...+..++.+++|+.|++++|. +++..+..  +...    ++|++|++++|..+++-. ..+..++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~--L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER--LSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHH--HHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHH--HHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            78999999988877777778888888999888775 33333332  2222    468888888887666531 1234578


Q ss_pred             CccEEEecCCccccCc
Q 045118          153 KLESLILNPCAYLRKL  168 (221)
Q Consensus       153 ~L~~L~l~~~~~l~~~  168 (221)
                      +|++|++++|+.++..
T Consensus       140 ~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          140 NLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             TCCEEEEESCTTCCCH
T ss_pred             CCCEEECCCCCCCCch
Confidence            8888888888777654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.55  E-value=3.6e-07  Score=73.84  Aligned_cols=79  Identities=14%  Similarity=0.099  Sum_probs=45.0

Q ss_pred             CCCccEEEEEecCCc--------ccc---------chh-Hhhcc--------CCCCcEEEeeecCceeeehhhcc--ccC
Q 045118           23 LPNVRTFRISGDLSY--------YHS---------GVS-KSLCK--------LHKLECLKLVNKGKMWQLSRMIL--SEY   74 (221)
Q Consensus        23 l~~Lr~L~l~~~~~~--------~~~---------~~~-~~l~~--------l~~L~~L~l~~~~~~~~L~~Llp--~l~   74 (221)
                      +++|+.|+++++...        ...         .+| ..|.+        +++|+++++..     +++. ++  .+.
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-----~i~~-I~~~aF~  121 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-----KIKN-IEDAAFK  121 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-----TCCE-ECTTTTT
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-----cccc-hhHHHhh
Confidence            778888888887511        000         122 34556        77888877765     2233 34  566


Q ss_pred             cCCCCccEEEeecccCCCCCchhhccCCCCcEEE
Q 045118           75 KFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLK  108 (221)
Q Consensus        75 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  108 (221)
                      .+ ++|+.+++..|.+...+..++..+.++..+.
T Consensus       122 ~~-~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~  154 (329)
T 3sb4_A          122 GC-DNLKICQIRKKTAPNLLPEALADSVTAIFIP  154 (329)
T ss_dssp             TC-TTCCEEEBCCSSCCEECTTSSCTTTCEEEEC
T ss_pred             cC-cccceEEcCCCCccccchhhhcCCCceEEec
Confidence            66 7888888877765444444444444444443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.26  E-value=1.2e-06  Score=72.00  Aligned_cols=152  Identities=15%  Similarity=0.162  Sum_probs=93.0

Q ss_pred             CCCcceeceecCCC-----------CChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhh
Q 045118            1 LKNLIFISALHPSS-----------CTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRM   69 (221)
Q Consensus         1 L~~L~~L~~~~~~~-----------~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L   69 (221)
                      +++|++|.......           .....+..+++|++|.++++.  . ..++. + .+++|++|++..+.-.  -.. 
T Consensus       138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~--~-l~l~~-~-~~~~L~~L~L~~~~l~--~~~-  209 (362)
T 2ra8_A          138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN--N-LSIGK-K-PRPNLKSLEIISGGLP--DSV-  209 (362)
T ss_dssp             HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB--T-CBCCS-C-BCTTCSEEEEECSBCC--HHH-
T ss_pred             cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC--C-ceecc-c-cCCCCcEEEEecCCCC--hHH-
Confidence            36788886432211           133446778999999999873  1 22333 3 3899999999863110  000 


Q ss_pred             cccc--CcCCCCccEEEeecc--cCCCC-Cc----hhh--ccCCCCcEEEecCCccCCce--eeeeCCCCCCcccEEecc
Q 045118           70 ILSE--YKFPPSLTQLSLSNT--ELMED-PM----PTL--EKLPHLEVLKLKQNSYLERK--LACVGCSSFSQLKILHLK  136 (221)
Q Consensus        70 lp~l--~~~~~~L~~L~l~~~--~~~~~-~~----~~l--~~l~~L~~L~l~~~~~~~~~--l~~~~~~~~~~L~~L~L~  136 (221)
                      +..+  ..+ |+|+.|+++.+  ..... ..    ..+  ..+|+|+.|.+.+|.+....  .... ...+++|+.|+|+
T Consensus       210 l~~l~~~~l-p~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~-a~~~~~L~~LdLs  287 (362)
T 2ra8_A          210 VEDILGSDL-PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE-SDILPQLETMDIS  287 (362)
T ss_dssp             HHHHHHSBC-TTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHH-CSSGGGCSEEECC
T ss_pred             HHHHHHccC-CCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHh-CccCCCCCEEECC
Confidence            1222  367 89999998642  11111 11    122  25899999999887765321  1112 3458899999998


Q ss_pred             ccccccce-----eeCCCCCCCccEEEecCCc
Q 045118          137 SMLWLEEW-----TMGAGAMPKLESLILNPCA  163 (221)
Q Consensus       137 ~~~~l~~~-----~~~~~~l~~L~~L~l~~~~  163 (221)
                      .+. +.+.     ......+++|+.|++++|.
T Consensus       288 ~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          288 AGV-LTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             SSC-CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             CCC-CChHHHHHHHhhcccCCcceEEECCCCc
Confidence            776 5542     2222457999999999863

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.13  E-value=9.1e-07  Score=65.02  Aligned_cols=84  Identities=8%  Similarity=0.103  Sum_probs=65.6

Q ss_pred             CCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCC----CCCccEEEecCCccccCcc-hhhccC
Q 045118          102 PHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGA----MPKLESLILNPCAYLRKLP-EELWCI  175 (221)
Q Consensus       102 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~----l~~L~~L~l~~~~~l~~~~-~~~~~l  175 (221)
                      .+|+.|+++++.+....+..  +..+++|+.|+|++|..+++.... +..    .++|++|++++|..+++-. ..+.++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~--L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~  138 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDH--MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF  138 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGG--GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred             ceEeEEeCcCCCccHHHHHH--hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence            36999999999877655553  557999999999999877765211 222    3579999999999887543 347789


Q ss_pred             CcCcEEEccCCC
Q 045118          176 KSLCKLELHWPQ  187 (221)
Q Consensus       176 ~~L~~l~l~~~~  187 (221)
                      ++|++|++.+|+
T Consensus       139 ~~L~~L~L~~c~  150 (176)
T 3e4g_A          139 RNLKYLFLSDLP  150 (176)
T ss_dssp             TTCCEEEEESCT
T ss_pred             CCCCEEECCCCC
Confidence            999999999997

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.06  E-value=4.5e-05  Score=63.42  Aligned_cols=105  Identities=10%  Similarity=0.094  Sum_probs=53.5

Q ss_pred             ccCcCCCCccEEEeecccCC-----CCCchhhccCCCCcEEEecCCccCCceeee-eCCCCCCcccEEecccccccccee
Q 045118           72 SEYKFPPSLTQLSLSNTELM-----EDPMPTLEKLPHLEVLKLKQNSYLERKLAC-VGCSSFSQLKILHLKSMLWLEEWT  145 (221)
Q Consensus        72 ~l~~~~~~L~~L~l~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~-~~~~~~~~L~~L~L~~~~~l~~~~  145 (221)
                      .+..+ ++|+.+++.++...     ..+..++..+++|+.+.+.. ....  ++. . +.++++|+.+.+.+.  ++.+.
T Consensus       266 aF~~c-~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~--I~~~a-F~~c~~L~~l~lp~~--l~~I~  338 (401)
T 4fdw_A          266 AFYYC-PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRI--LGQGL-LGGNRKVTQLTIPAN--VTQIN  338 (401)
T ss_dssp             TTTTC-TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCE--ECTTT-TTTCCSCCEEEECTT--CCEEC
T ss_pred             HhhCC-CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEE--Ehhhh-hcCCCCccEEEECcc--ccEEc
Confidence            44445 67777776665543     23334566667777777642 2211  211 2 344566677666432  44442


Q ss_pred             -eCCCCCCCccEEEecCCccccCcc-hhhccCC-cCcEEEccC
Q 045118          146 -MGAGAMPKLESLILNPCAYLRKLP-EELWCIK-SLCKLELHW  185 (221)
Q Consensus       146 -~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~-~L~~l~l~~  185 (221)
                       .++..+ +|+.+.+.++ ....++ ..+..++ .+..+++-.
T Consensus       339 ~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          339 FSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             TTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECG
T ss_pred             HHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCH
Confidence             234445 6777777663 233332 2344453 456666543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.93  E-value=6.6e-05  Score=62.41  Aligned_cols=159  Identities=11%  Similarity=0.081  Sum_probs=95.7

Q ss_pred             ChhhcCCCCCccEEEEEecCCccccchhH-hhccCCCCcEEEeeecCcee---------eehhh--------cc--ccCc
Q 045118           16 TPDILGRLPNVRTFRISGDLSYYHSGVSK-SLCKLHKLECLKLVNKGKMW---------QLSRM--------IL--SEYK   75 (221)
Q Consensus        16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~---------~L~~L--------lp--~l~~   75 (221)
                      ....+.+|++|+.+++..+.   ...++. .+. ..+|+.+.+..+-+.+         +|+.+        ++  .+..
T Consensus       172 ~~~aF~~c~~L~~l~l~~n~---l~~I~~~aF~-~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~  247 (401)
T 4fdw_A          172 KEDIFYYCYNLKKADLSKTK---ITKLPASTFV-YAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE  247 (401)
T ss_dssp             CSSTTTTCTTCCEEECTTSC---CSEECTTTTT-TCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT
T ss_pred             hHHHhhCcccCCeeecCCCc---ceEechhhEe-ecccCEEEeCCchheehhhHhhCCCCCCEEecCCCccCcccccccc
Confidence            34568889999999887653   222222 223 3566666664321111         11111        22  2222


Q ss_pred             CCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCc---eee-eeCCCCCCcccEEecccccccccee-eCCCC
Q 045118           76 FPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLER---KLA-CVGCSSFSQLKILHLKSMLWLEEWT-MGAGA  150 (221)
Q Consensus        76 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~---~l~-~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~  150 (221)
                        .+|+.+.+. +.+...+..++..+++|+.+.+..+.....   .++ .. +.++++|+.+.+.+  .++.+. ..+..
T Consensus       248 --~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a-F~~c~~L~~l~l~~--~i~~I~~~aF~~  321 (401)
T 4fdw_A          248 --SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC-LEGCPKLARFEIPE--SIRILGQGLLGG  321 (401)
T ss_dssp             --CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT-TTTCTTCCEECCCT--TCCEECTTTTTT
T ss_pred             --CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHH-hhCCccCCeEEeCC--ceEEEhhhhhcC
Confidence              467777774 334545556788899999999877654311   121 13 55677889888873  366663 34566


Q ss_pred             CCCccEEEecCCccccCcch-hhccCCcCcEEEccCCC
Q 045118          151 MPKLESLILNPCAYLRKLPE-ELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       151 l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~l~l~~~~  187 (221)
                      +++|+.+.+..  .++.++. .+.++ +|+++++.++.
T Consensus       322 c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          322 NRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             CCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSS
T ss_pred             CCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCC
Confidence            78899999964  3666643 47778 99999998753

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.90  E-value=7.5e-07  Score=73.47  Aligned_cols=136  Identities=18%  Similarity=0.108  Sum_probs=90.3

Q ss_pred             CCCCcEEEeeecCcee-eehhhcc-ccCcCCCCccEEEeecccCCCCCchhhc-cCCCCcEEEecCCccCCceeeee-C-
Q 045118           49 LHKLECLKLVNKGKMW-QLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLE-KLPHLEVLKLKQNSYLERKLACV-G-  123 (221)
Q Consensus        49 l~~L~~L~l~~~~~~~-~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~l~~~-~-  123 (221)
                      +++|++|+++++.-.- .... +. .+...+++|+.|++++|.+.......+. .+++|+.|++++|.+........ . 
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~-l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTV-VAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHH-HHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHH-HHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            4789999998741100 0111 22 3333336999999999998754444433 46789999999998764322211 0 


Q ss_pred             C-CCCCcccEEeccccccccc-----eeeCCCCCCCccEEEecCCcccc-----CcchhhccCCcCcEEEccCCC
Q 045118          124 C-SSFSQLKILHLKSMLWLEE-----WTMGAGAMPKLESLILNPCAYLR-----KLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       124 ~-~~~~~L~~L~L~~~~~l~~-----~~~~~~~l~~L~~L~l~~~~~l~-----~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      . ...+.|+.|++++|. +.+     +...+...++|++|++++|. +.     .++..+...++|++|++.+|.
T Consensus       150 L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~  222 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG  222 (372)
T ss_dssp             HHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred             HHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence            1 346789999999997 543     23333568899999999965 33     234457788899999999986

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.84  E-value=2.4e-06  Score=63.40  Aligned_cols=83  Identities=16%  Similarity=0.025  Sum_probs=37.4

Q ss_pred             CCccEEEeecccCCCCCch----hhccCCCCcEEEecCCccCCce---eeeeCCCCCCcccEEec--cccccccc-----
Q 045118           78 PSLTQLSLSNTELMEDPMP----TLEKLPHLEVLKLKQNSYLERK---LACVGCSSFSQLKILHL--KSMLWLEE-----  143 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~---l~~~~~~~~~~L~~L~L--~~~~~l~~-----  143 (221)
                      ++|++|++++|.+......    .+...+.|++|++++|.+....   +... ....+.|++|++  .++. +.+     
T Consensus        65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~-L~~n~~L~~L~L~~~~N~-i~~~g~~~  142 (185)
T 1io0_A           65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA-LQSNTSLIELRIDNQSQP-LGNNVEME  142 (185)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG-GGGCSSCCEEECCCCSSC-CCHHHHHH
T ss_pred             CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH-HHhCCCceEEEecCCCCC-CCHHHHHH
Confidence            5555555555555432211    2233355566666555544321   1111 223445666666  4343 222     


Q ss_pred             eeeCCCCCCCccEEEecCC
Q 045118          144 WTMGAGAMPKLESLILNPC  162 (221)
Q Consensus       144 ~~~~~~~l~~L~~L~l~~~  162 (221)
                      +...+...+.|++|++++|
T Consensus       143 l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          143 IANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             HHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHhCCCcCEEeccCC
Confidence            1112223456667776664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.49  E-value=5.8e-05  Score=59.19  Aligned_cols=32  Identities=25%  Similarity=0.201  Sum_probs=15.2

Q ss_pred             CccEEEecCCccccCcc-------hhhccCCcCcEEEcc
Q 045118          153 KLESLILNPCAYLRKLP-------EELWCIKSLCKLELH  184 (221)
Q Consensus       153 ~L~~L~l~~~~~l~~~~-------~~~~~l~~L~~l~l~  184 (221)
                      +|+.|.+.+|+-...+|       ..+..+|+|+.|+=.
T Consensus       221 ~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH  259 (267)
T ss_dssp             CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred             CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence            45555555544322222       124556666666533

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.49  E-value=3.7e-05  Score=56.84  Aligned_cols=122  Identities=9%  Similarity=-0.016  Sum_probs=82.8

Q ss_pred             ChhhcCCCCCccEEEEEec-CC--ccccchhHhhccCCCCcEEEeeecCcee-eehhhccccCcCCCCccEEEeecccCC
Q 045118           16 TPDILGRLPNVRTFRISGD-LS--YYHSGVSKSLCKLHKLECLKLVNKGKMW-QLSRMILSEYKFPPSLTQLSLSNTELM   91 (221)
Q Consensus        16 ~~~~l~~l~~Lr~L~l~~~-~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~L~~Llp~l~~~~~~L~~L~l~~~~~~   91 (221)
                      +...+...++|++|+++++ ..  .....+...+...++|++|+++++.-.- ....+...+... ++|++|++++|.+.
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n-~~L~~L~L~~N~i~  106 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN-NTLKSLNVESNFIS  106 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHC-SSCCEEECCSSCCC
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhC-CCcCEEECcCCcCC
Confidence            3445778899999999988 51  1234566777888999999999841100 001111145556 78999999999987


Q ss_pred             CCC----chhhccCCCCcEEEe--cCCccCCcee---eeeCCCCCCcccEEeccccc
Q 045118           92 EDP----MPTLEKLPHLEVLKL--KQNSYLERKL---ACVGCSSFSQLKILHLKSML  139 (221)
Q Consensus        92 ~~~----~~~l~~l~~L~~L~l--~~~~~~~~~l---~~~~~~~~~~L~~L~L~~~~  139 (221)
                      ..+    ...+...+.|++|++  ++|.+..+..   ... +...+.|++|++++|.
T Consensus       107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~-L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH-HHhCCCcCEEeccCCC
Confidence            543    235667789999999  7787764322   222 3345789999998876

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.23  E-value=0.00013  Score=57.22  Aligned_cols=59  Identities=29%  Similarity=0.396  Sum_probs=31.8

Q ss_pred             CCccEEEeecccCCCCC--chhhccCCCCcEEEecCCccCCc-eeeeeCCCCCCcccEEeccccc
Q 045118           78 PSLTQLSLSNTELMEDP--MPTLEKLPHLEVLKLKQNSYLER-KLACVGCSSFSQLKILHLKSML  139 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~-~l~~~~~~~~~~L~~L~L~~~~  139 (221)
                      ++|+.|++++|.+....  ...++.+++|+.|++++|.+.+. .+. . +..+ +|++|++.+|+
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~-~-l~~l-~L~~L~L~~Np  231 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD-K-IKGL-KLEELWLDGNS  231 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGG-G-GTTS-CCSEEECTTST
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhh-h-cccC-CcceEEccCCc
Confidence            56666666666665432  12344566666666666665542 111 1 2222 66666666666

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.97  E-value=0.0067  Score=49.89  Aligned_cols=143  Identities=18%  Similarity=0.124  Sum_probs=76.0

Q ss_pred             CCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCCCchhh
Q 045118           21 GRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMEDPMPTL   98 (221)
Q Consensus        21 ~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~~~~~l   98 (221)
                      -..++|+.+.+....   ...-...+.+...|+.+.+..+..     . ++  .+... ..++.+......+.   ...+
T Consensus       227 ~~~~~l~~i~ip~~~---~~i~~~~f~~~~~l~~~~~~~~~~-----~-i~~~~F~~~-~~l~~~~~~~~~i~---~~~F  293 (394)
T 4fs7_A          227 LSKTGVKNIIIPDSF---TELGKSVFYGCTDLESISIQNNKL-----R-IGGSLFYNC-SGLKKVIYGSVIVP---EKTF  293 (394)
T ss_dssp             TTTCCCCEEEECTTC---CEECSSTTTTCSSCCEEEECCTTC-----E-ECSCTTTTC-TTCCEEEECSSEEC---TTTT
T ss_pred             cccCCCceEEECCCc---eecccccccccccceeEEcCCCcc-----e-eeccccccc-cccceeccCceeec---cccc
Confidence            345778888775542   222234566778888888866311     1 22  34444 66666655544322   2345


Q ss_pred             ccCCCCcEEEecCCccCCceeee-eCCCCCCcccEEecccccccccee-eCCCCCCCccEEEecCCccccCcch-hhccC
Q 045118           99 EKLPHLEVLKLKQNSYLERKLAC-VGCSSFSQLKILHLKSMLWLEEWT-MGAGAMPKLESLILNPCAYLRKLPE-ELWCI  175 (221)
Q Consensus        99 ~~l~~L~~L~l~~~~~~~~~l~~-~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l  175 (221)
                      ..+.+|+.+.+..+ ...  ++. . +.++.+|+.+.+.+  .++.+. .++..+.+|+.+.+..  .++.++. .+.+|
T Consensus       294 ~~~~~L~~i~l~~~-i~~--I~~~a-F~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C  365 (394)
T 4fs7_A          294 YGCSSLTEVKLLDS-VKF--IGEEA-FESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGC  365 (394)
T ss_dssp             TTCTTCCEEEECTT-CCE--ECTTT-TTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTC
T ss_pred             cccccccccccccc-cce--echhh-hcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCC
Confidence            56667777776432 111  111 2 33456677666642  244442 2344566677776653  2444433 35667


Q ss_pred             CcCcEEEcc
Q 045118          176 KSLCKLELH  184 (221)
Q Consensus       176 ~~L~~l~l~  184 (221)
                      ++|+++++.
T Consensus       366 ~~L~~i~lp  374 (394)
T 4fs7_A          366 INLKKVELP  374 (394)
T ss_dssp             TTCCEEEEE
T ss_pred             CCCCEEEEC
Confidence            777777664

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.68  E-value=0.12  Score=42.39  Aligned_cols=146  Identities=11%  Similarity=0.022  Sum_probs=77.6

Q ss_pred             hhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCCCc
Q 045118           18 DILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMEDPM   95 (221)
Q Consensus        18 ~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~~~   95 (221)
                      ..+.++..|+.+.+....    ..+........+|+.+.+....     .. ++  .+... .+++.+.+..+... ...
T Consensus       202 ~~F~~~~~L~~i~~~~~~----~~i~~~~~~~~~l~~i~ip~~~-----~~-i~~~~f~~~-~~l~~~~~~~~~~~-i~~  269 (394)
T 4fs7_A          202 YCFAECILLENMEFPNSL----YYLGDFALSKTGVKNIIIPDSF-----TE-LGKSVFYGC-TDLESISIQNNKLR-IGG  269 (394)
T ss_dssp             TTTTTCTTCCBCCCCTTC----CEECTTTTTTCCCCEEEECTTC-----CE-ECSSTTTTC-SSCCEEEECCTTCE-ECS
T ss_pred             hhhccccccceeecCCCc----eEeehhhcccCCCceEEECCCc-----ee-ccccccccc-ccceeEEcCCCcce-eec
Confidence            345666777766554432    1112222334567777665421     11 22  34444 67777777655332 233


Q ss_pred             hhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEecccccccccee-eCCCCCCCccEEEecCCccccCcch-hhc
Q 045118           96 PTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWT-MGAGAMPKLESLILNPCAYLRKLPE-ELW  173 (221)
Q Consensus        96 ~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~  173 (221)
                      ..+..+..++.+......+..    .. +....+|+.+.+.+  .++.+. .++..+.+|+.+.+..  .++.++. .+.
T Consensus       270 ~~F~~~~~l~~~~~~~~~i~~----~~-F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~  340 (394)
T 4fs7_A          270 SLFYNCSGLKKVIYGSVIVPE----KT-FYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFR  340 (394)
T ss_dssp             CTTTTCTTCCEEEECSSEECT----TT-TTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTT
T ss_pred             cccccccccceeccCceeecc----cc-cccccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhcc
Confidence            456667777777664332211    12 33556777777643  244452 2345567777777753  3555543 466


Q ss_pred             cCCcCcEEEcc
Q 045118          174 CIKSLCKLELH  184 (221)
Q Consensus       174 ~l~~L~~l~l~  184 (221)
                      +|.+|+.+.+.
T Consensus       341 ~c~~L~~i~lp  351 (394)
T 4fs7_A          341 GCTSLSNINFP  351 (394)
T ss_dssp             TCTTCCEECCC
T ss_pred             CCCCCCEEEEC
Confidence            77777777764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.51  E-value=0.045  Score=44.50  Aligned_cols=103  Identities=17%  Similarity=0.196  Sum_probs=61.8

Q ss_pred             cCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeee-eCCCCCCcccEEecccccccccee-eCCCC
Q 045118           73 EYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLAC-VGCSSFSQLKILHLKSMLWLEEWT-MGAGA  150 (221)
Q Consensus        73 l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~-~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~  150 (221)
                      +... .+|+.+.+..+ +...+..++..+.+|+.+.+..+ ...  ++. . +.++++|+.+.+.++. ++.+. ..+..
T Consensus       236 f~~~-~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~--i~~~a-F~~c~~L~~i~l~~~~-i~~I~~~aF~~  308 (379)
T 4h09_A          236 FYGM-KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKT--VPYLL-CSGCSNLTKVVMDNSA-IETLEPRVFMD  308 (379)
T ss_dssp             TTTC-SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSE--ECTTT-TTTCTTCCEEEECCTT-CCEECTTTTTT
T ss_pred             ccCC-ccceEEEcCCC-ccEeCccccceeehhcccccccc-cee--ccccc-cccccccccccccccc-cceehhhhhcC
Confidence            3444 67777777654 33344456667777888777432 111  221 2 4456788888876554 55553 34556


Q ss_pred             CCCccEEEecCCccccCcch-hhccCCcCcEEEcc
Q 045118          151 MPKLESLILNPCAYLRKLPE-ELWCIKSLCKLELH  184 (221)
Q Consensus       151 l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~l~l~  184 (221)
                      +.+|+.+.+..  .++.+.. .+.+|++|+++.+-
T Consensus       309 c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          309 CVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             CTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred             CCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence            77888888753  3555543 46778888887763

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.44  E-value=0.015  Score=40.21  Aligned_cols=39  Identities=33%  Similarity=0.514  Sum_probs=30.8

Q ss_pred             CCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCcc
Q 045118           76 FPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSY  114 (221)
Q Consensus        76 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  114 (221)
                      +|++|++|++++|.+...+...+..+++|+.|++.+|.+
T Consensus        29 lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           29 FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            456788888888888877767778888888888877754

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.08  E-value=0.054  Score=44.00  Aligned_cols=127  Identities=11%  Similarity=0.082  Sum_probs=70.3

Q ss_pred             hhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCCCc
Q 045118           18 DILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMEDPM   95 (221)
Q Consensus        18 ~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~~~   95 (221)
                      ..+..+.+|+.+.+...   ....-...+.+..+|+.+.+..+     ++. ++  .+... .+|+.+.+..+ +...+.
T Consensus       211 ~~f~~~~~l~~i~~~~~---~~~i~~~~f~~~~~L~~i~lp~~-----v~~-I~~~aF~~~-~~l~~i~l~~~-i~~i~~  279 (379)
T 4h09_A          211 YGFSYGKNLKKITITSG---VTTLGDGAFYGMKALDEIAIPKN-----VTS-IGSFLLQNC-TALKTLNFYAK-VKTVPY  279 (379)
T ss_dssp             TTTTTCSSCSEEECCTT---CCEECTTTTTTCSSCCEEEECTT-----CCE-ECTTTTTTC-TTCCEEEECCC-CSEECT
T ss_pred             cccccccccceeeeccc---eeEEccccccCCccceEEEcCCC-----ccE-eCcccccee-ehhcccccccc-ceeccc
Confidence            34556777887776544   22233345667778888777542     222 22  44455 67777777543 333444


Q ss_pred             hhhccCCCCcEEEecCCccCCceee-eeCCCCCCcccEEecccccccccee-eCCCCCCCccEEEec
Q 045118           96 PTLEKLPHLEVLKLKQNSYLERKLA-CVGCSSFSQLKILHLKSMLWLEEWT-MGAGAMPKLESLILN  160 (221)
Q Consensus        96 ~~l~~l~~L~~L~l~~~~~~~~~l~-~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~l~~L~~L~l~  160 (221)
                      .++..+++|+.+.+..+....  ++ .. +.++.+|+.+.+..  .++.+. .++..+.+|+.+.+.
T Consensus       280 ~aF~~c~~L~~i~l~~~~i~~--I~~~a-F~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          280 LLCSGCSNLTKVVMDNSAIET--LEPRV-FMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             TTTTTCTTCCEEEECCTTCCE--ECTTT-TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred             cccccccccccccccccccce--ehhhh-hcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence            466677777777775443321  21 12 44556777777642  244452 234455666666654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.08  E-value=0.047  Score=44.75  Aligned_cols=124  Identities=12%  Similarity=0.150  Sum_probs=74.0

Q ss_pred             HhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceee-
Q 045118           44 KSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLA-  120 (221)
Q Consensus        44 ~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~-  120 (221)
                      ..+.+..+|+.+.+..+     +.. ++  .+... ++|+.+.+.. .+...+..++..+.+|+.+.+..+ ...  +. 
T Consensus       259 ~aF~~c~~L~~i~lp~~-----~~~-I~~~aF~~c-~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~--I~~  327 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDS-----VVS-IGTGAFMNC-PALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQ--ILD  327 (394)
T ss_dssp             TTTTTCSSCCEEECCTT-----CCE-ECTTTTTTC-TTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCE--ECT
T ss_pred             ceeeecccccEEecccc-----cce-ecCcccccc-cccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccE--ehH
Confidence            45677788888888652     122 33  45556 8888888863 444455567888899999998543 211  21 


Q ss_pred             eeCCCCCCcccEEecccccccccee-eCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEcc
Q 045118          121 CVGCSSFSQLKILHLKSMLWLEEWT-MGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELH  184 (221)
Q Consensus       121 ~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~  184 (221)
                      .. +.++.+|+.+.+..  .++.+. .++..+.+|+.+.+.+...  .+ ..+..+..|+.+.+.
T Consensus       328 ~a-F~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~--~~-~~~~~~~~L~~i~i~  386 (394)
T 4gt6_A          328 DA-FAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRS--QW-NAISTDSGLQNLPVA  386 (394)
T ss_dssp             TT-TTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHH--HH-HTCBCCCCC------
T ss_pred             hH-hhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCcee--eh-hhhhccCCCCEEEeC
Confidence            13 45677888888853  255553 3466788899998886421  11 245667777777664

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.74  E-value=0.094  Score=42.93  Aligned_cols=127  Identities=9%  Similarity=0.152  Sum_probs=79.9

Q ss_pred             hhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCCC
Q 045118           17 PDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMEDP   94 (221)
Q Consensus        17 ~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~~   94 (221)
                      ..++..+++|+.+.+...   ....-...+.+.++|+.+.+..     ++.. ++  .+..+ .+|+.+.+..+ ++..+
T Consensus       258 ~~aF~~c~~L~~i~lp~~---~~~I~~~aF~~c~~L~~i~l~~-----~i~~-I~~~aF~~c-~~L~~i~lp~~-v~~I~  326 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDS---VVSIGTGAFMNCPALQDIEFSS-----RITE-LPESVFAGC-ISLKSIDIPEG-ITQIL  326 (394)
T ss_dssp             TTTTTTCSSCCEEECCTT---CCEECTTTTTTCTTCCEEECCT-----TCCE-ECTTTTTTC-TTCCEEECCTT-CCEEC
T ss_pred             cceeeecccccEEecccc---cceecCcccccccccccccCCC-----cccc-cCceeecCC-CCcCEEEeCCc-ccEeh
Confidence            345778999999987655   2333345678889999999865     2233 44  56667 89999999754 45455


Q ss_pred             chhhccCCCCcEEEecCCccCCceee-eeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecC
Q 045118           95 MPTLEKLPHLEVLKLKQNSYLERKLA-CVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNP  161 (221)
Q Consensus        95 ~~~l~~l~~L~~L~l~~~~~~~~~l~-~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~  161 (221)
                      ..++..+.+|+.+.+..+ ...  +. .+ +.++++|+.+.+.+..  ..+ ..+.....|+.+.+..
T Consensus       327 ~~aF~~C~~L~~i~ip~s-v~~--I~~~a-F~~C~~L~~i~~~~~~--~~~-~~~~~~~~L~~i~i~~  387 (394)
T 4gt6_A          327 DDAFAGCEQLERIAIPSS-VTK--IPESA-FSNCTALNNIEYSGSR--SQW-NAISTDSGLQNLPVAP  387 (394)
T ss_dssp             TTTTTTCTTCCEEEECTT-CCB--CCGGG-GTTCTTCCEEEESSCH--HHH-HTCBCCCCC-------
T ss_pred             HhHhhCCCCCCEEEECcc-cCE--EhHhH-hhCCCCCCEEEECCce--eeh-hhhhccCCCCEEEeCC
Confidence            568889999999999543 221  21 23 5578899999887654  112 2334456666666543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=87.90  E-value=0.98  Score=30.78  Aligned_cols=34  Identities=24%  Similarity=0.226  Sum_probs=15.6

Q ss_pred             CccEEEecCCccccCcchh-hccCCcCcEEEccCCC
Q 045118          153 KLESLILNPCAYLRKLPEE-LWCIKSLCKLELHWPQ  187 (221)
Q Consensus       153 ~L~~L~l~~~~~l~~~~~~-~~~l~~L~~l~l~~~~  187 (221)
                      +|++|++++ +.++.+|.+ +..+++|++|++.+++
T Consensus        32 ~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           32 DTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence            344445444 334444332 3445555555555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=86.26  E-value=0.4  Score=35.47  Aligned_cols=74  Identities=18%  Similarity=0.226  Sum_probs=35.6

Q ss_pred             hhHhhccCCCCcEEEeeec-Ccee-eehhhccccCcCCCCccEEEeecccCCCCCch----hhccCCCCcEEEecCCccC
Q 045118           42 VSKSLCKLHKLECLKLVNK-GKMW-QLSRMILSEYKFPPSLTQLSLSNTELMEDPMP----TLEKLPHLEVLKLKQNSYL  115 (221)
Q Consensus        42 ~~~~l~~l~~L~~L~l~~~-~~~~-~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~  115 (221)
                      +...+.+-+.|++|+++++ .-.- -.+.+...+..- +.|+.|++++|.+......    ++..=+.|+.|++++|.+.
T Consensus        33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N-~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNS-KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC-SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhC-CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            3344455566777777541 1000 001111133434 5677777777766532222    2334456666776666654


Q ss_pred             C
Q 045118          116 E  116 (221)
Q Consensus       116 ~  116 (221)
                      .
T Consensus       112 ~  112 (197)
T 1pgv_A          112 P  112 (197)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=81.31  E-value=2.7  Score=31.01  Aligned_cols=117  Identities=11%  Similarity=0.074  Sum_probs=69.7

Q ss_pred             cCCCCCccEEEEEec-C--CccccchhHhhccCCCCcEEEeeecCcee-eehhhcc-ccCcCCCCccEEEeecccCCCCC
Q 045118           20 LGRLPNVRTFRISGD-L--SYYHSGVSKSLCKLHKLECLKLVNKGKMW-QLSRMIL-SEYKFPPSLTQLSLSNTELMEDP   94 (221)
Q Consensus        20 l~~l~~Lr~L~l~~~-~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~   94 (221)
                      +..-+.|++|+++++ .  ......+.+.+..-..|++|+++++.-.- --+. +. .+..= +.|++|++++|.+...+
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~a-lA~aL~~N-~tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARG-LIELIETS-PSLRVLNVESNFLTPEL  114 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTT-HHHHHHHC-SSCCEEECCSSBCCHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHH-HHHHHhcC-CccCeEecCCCcCCHHH
Confidence            445678999999875 3  11234566777878999999998741000 0000 11 23334 68999999999987544


Q ss_pred             ch----hhccCCCCcEEEecCCcc--CCc----eeeeeCCCCCCcccEEeccccc
Q 045118           95 MP----TLEKLPHLEVLKLKQNSY--LER----KLACVGCSSFSQLKILHLKSML  139 (221)
Q Consensus        95 ~~----~l~~l~~L~~L~l~~~~~--~~~----~l~~~~~~~~~~L~~L~L~~~~  139 (221)
                      ..    ++..-+.|++|+++++..  .++    .+... ...-+.|+.|+++.+.
T Consensus       115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~a-L~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMA-IEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHH-HHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHH-HHhCCCcCeEeccCCC
Confidence            33    344456799999975432  121    11112 2234678888886543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	221
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.62
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.53
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.5
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.46
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.43
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.41
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.41
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.4
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.4
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.38
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.37
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.37
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.36
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.31
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.3
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.28
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.24
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.21
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.2
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.16
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.13
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.12
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.11
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.1
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.97
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.92
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.77
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.7
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.47
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.29
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.28
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.22
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.62
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.49
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.48
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.21
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.75
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.07
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.72
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.72

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.8e-15  Score=115.84  Aligned_cols=111  Identities=26%  Similarity=0.270  Sum_probs=76.8

Q ss_pred             ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCC
Q 045118           72 SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGA  150 (221)
Q Consensus        72 ~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~  150 (221)
                      .+..+ ++|+.|+++++.+.......+..+.++++|.+++|.+..  ++......++.++.++++++. ++.++.. ++.
T Consensus        95 ~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~--l~~~~~~~l~~l~~l~l~~N~-l~~~~~~~~~~  170 (266)
T d1p9ag_          95 LGQTL-PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT--LPPGLLTPTPKLEKLSLANNN-LTELPAGLLNG  170 (266)
T ss_dssp             CTTTC-TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTT
T ss_pred             ccccc-cccccccccccccceeeccccccccccccccccccccce--eccccccccccchhccccccc-ccccCcccccc
Confidence            34444 555566665555554444445555666666665555433  221113457889999999887 7777543 677


Q ss_pred             CCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118          151 MPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       151 l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      +++|++|++++ +.++.+|.++..+++|+.|++.++|
T Consensus       171 l~~L~~L~Ls~-N~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         171 LENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             ccccceeeccc-CCCcccChhHCCCCCCCEEEecCCC
Confidence            99999999998 5688999999999999999999875

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=5.1e-15  Score=110.26  Aligned_cols=142  Identities=20%  Similarity=0.274  Sum_probs=63.4

Q ss_pred             hcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhh
Q 045118           19 ILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTL   98 (221)
Q Consensus        19 ~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l   98 (221)
                      .++.+++|++|+++++.  . ..+++ ++++++|++|+++++.    +.. ++.+..+ ++|+.|++++|.....  ..+
T Consensus        57 ~l~~l~nL~~L~Ls~N~--l-~~~~~-l~~l~~L~~L~l~~n~----~~~-~~~l~~l-~~L~~L~l~~~~~~~~--~~~  124 (199)
T d2omxa2          57 GVEYLNNLTQINFSNNQ--L-TDITP-LKNLTKLVDILMNNNQ----IAD-ITPLANL-TNLTGLTLFNNQITDI--DPL  124 (199)
T ss_dssp             TGGGCTTCCEEECCSSC--C-CCCGG-GTTCTTCCEEECCSSC----CCC-CGGGTTC-TTCSEEECCSSCCCCC--GGG
T ss_pred             ccccCCCcCcCcccccc--c-cCccc-ccCCcccccccccccc----ccc-ccccccc-cccccccccccccccc--ccc
Confidence            34445555555555553  1 22221 4555555555554421    011 3344444 5555555555544332  234


Q ss_pred             ccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcC
Q 045118           99 EKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSL  178 (221)
Q Consensus        99 ~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L  178 (221)
                      ..+++|+.|++++|.+..  ++ . ...+++|+.|++.+|. +++++ .++.+++|++|++++| .+++++ .+..+++|
T Consensus       125 ~~l~~L~~L~l~~n~l~~--~~-~-l~~~~~L~~L~l~~n~-l~~l~-~l~~l~~L~~L~ls~N-~i~~i~-~l~~L~~L  196 (199)
T d2omxa2         125 KNLTNLNRLELSSNTISD--IS-A-LSGLTSLQQLNFSSNQ-VTDLK-PLANLTTLERLDISSN-KVSDIS-VLAKLTNL  196 (199)
T ss_dssp             TTCTTCSEEECCSSCCCC--CG-G-GTTCTTCSEEECCSSC-CCCCG-GGTTCTTCCEEECCSS-CCCCCG-GGGGCTTC
T ss_pred             chhhhhHHhhhhhhhhcc--cc-c-cccccccccccccccc-ccCCc-cccCCCCCCEEECCCC-CCCCCc-cccCCCCC
Confidence            445555555555444332  21 1 3344555555555544 44432 2334555555555553 344443 24444444


Q ss_pred             cE
Q 045118          179 CK  180 (221)
Q Consensus       179 ~~  180 (221)
                      ++
T Consensus       197 ~~  198 (199)
T d2omxa2         197 ES  198 (199)
T ss_dssp             SE
T ss_pred             Cc
Confidence            44

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=3.1e-15  Score=112.45  Aligned_cols=149  Identities=26%  Similarity=0.349  Sum_probs=109.4

Q ss_pred             ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCc
Q 045118           16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPM   95 (221)
Q Consensus        16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~   95 (221)
                      ....++.+++|++|+++++.   ...++ .++.+++|++|+++++    +++. +|.+..+ ++|+.|++.+|.....  
T Consensus        60 ~l~~l~~l~~L~~L~L~~n~---i~~l~-~~~~l~~L~~L~l~~n----~i~~-l~~l~~l-~~L~~L~l~~~~~~~~--  127 (210)
T d1h6ta2          60 SVQGIQYLPNVTKLFLNGNK---LTDIK-PLANLKNLGWLFLDEN----KVKD-LSSLKDL-KKLKSLSLEHNGISDI--  127 (210)
T ss_dssp             CCTTGGGCTTCCEEECCSSC---CCCCG-GGTTCTTCCEEECCSS----CCCC-GGGGTTC-TTCCEEECTTSCCCCC--
T ss_pred             CchhHhhCCCCCEEeCCCcc---ccCcc-ccccCccccccccccc----cccc-ccccccc-cccccccccccccccc--
Confidence            34457788888888888885   33333 4677888888888774    2333 5667777 8889998888877643  


Q ss_pred             hhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccC
Q 045118           96 PTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCI  175 (221)
Q Consensus        96 ~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l  175 (221)
                      ..+..+++++.++++.|.+..  .. . ...+++|+.++++++. +.+++ .+..+++|++|++++| .+++++ .+.++
T Consensus       128 ~~l~~l~~l~~l~~~~n~l~~--~~-~-~~~l~~L~~l~l~~n~-l~~i~-~l~~l~~L~~L~Ls~N-~i~~l~-~l~~l  199 (210)
T d1h6ta2         128 NGLVHLPQLESLYLGNNKITD--IT-V-LSRLTKLDTLSLEDNQ-ISDIV-PLAGLTKLQNLYLSKN-HISDLR-ALAGL  199 (210)
T ss_dssp             GGGGGCTTCCEEECCSSCCCC--CG-G-GGGCTTCSEEECCSSC-CCCCG-GGTTCTTCCEEECCSS-CCCBCG-GGTTC
T ss_pred             ccccccccccccccccccccc--cc-c-cccccccccccccccc-ccccc-cccCCCCCCEEECCCC-CCCCCh-hhcCC
Confidence            467788888988888777654  22 2 4467889999998887 66664 3567889999999885 577776 57888


Q ss_pred             CcCcEEEcc
Q 045118          176 KSLCKLELH  184 (221)
Q Consensus       176 ~~L~~l~l~  184 (221)
                      ++|++|+++
T Consensus       200 ~~L~~L~Ls  208 (210)
T d1h6ta2         200 KNLDVLELF  208 (210)
T ss_dssp             TTCSEEEEE
T ss_pred             CCCCEEEcc
Confidence            899998875

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.53  E-value=3.8e-14  Score=112.37  Aligned_cols=167  Identities=18%  Similarity=0.240  Sum_probs=115.1

Q ss_pred             ChhhcCCCCCccEEEEEe-cCCccccchhHhhccCCCCcEEEeeecC-ce-----e----eehhh----------cc-cc
Q 045118           16 TPDILGRLPNVRTFRISG-DLSYYHSGVSKSLCKLHKLECLKLVNKG-KM-----W----QLSRM----------IL-SE   73 (221)
Q Consensus        16 ~~~~l~~l~~Lr~L~l~~-~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~-----~----~L~~L----------lp-~l   73 (221)
                      +|.+++++++|++|++++ +.  ..+.+|+.++++++|++|+++++. ..     +    .|+.+          +| .+
T Consensus        68 lp~~l~~L~~L~~L~Ls~~N~--l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l  145 (313)
T d1ogqa_          68 IPSSLANLPYLNFLYIGGINN--LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI  145 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETT--EESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred             CChHHhcCccccccccccccc--cccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhh
Confidence            678899999999999987 44  556889999999999999998841 00     0    12221          44 56


Q ss_pred             CcCCCCccEEEeecccCCCCCchhhccCCCC-cEEEecCCccCCc----------------------eeeeeCCCCCCcc
Q 045118           74 YKFPPSLTQLSLSNTELMEDPMPTLEKLPHL-EVLKLKQNSYLER----------------------KLACVGCSSFSQL  130 (221)
Q Consensus        74 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L-~~L~l~~~~~~~~----------------------~l~~~~~~~~~~L  130 (221)
                      ..+ ++++.+++++|.+....+..+..+..+ +.+.++.|.+.+.                      ..+.. ...++.+
T Consensus       146 ~~l-~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~-~~~~~~l  223 (313)
T d1ogqa_         146 SSL-PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL-FGSDKNT  223 (313)
T ss_dssp             GGC-TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGG-CCTTSCC
T ss_pred             ccC-cccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence            667 777777777777654333455555554 5666655543211                      01112 3346678


Q ss_pred             cEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118          131 KILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       131 ~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      +.+++.++. +...+..++.+++|+.|++++|.-...+|..++++++|++|++.++.
T Consensus       224 ~~l~~~~~~-l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~  279 (313)
T d1ogqa_         224 QKIHLAKNS-LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             SEEECCSSE-ECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred             ccccccccc-ccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCc
Confidence            888877776 45444567778999999999855444889999999999999998864

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.50  E-value=1.1e-13  Score=104.81  Aligned_cols=165  Identities=19%  Similarity=0.255  Sum_probs=88.7

Q ss_pred             CcceeceecCCCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccE
Q 045118            3 NLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQ   82 (221)
Q Consensus         3 ~L~~L~~~~~~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~   82 (221)
                      +|+.|...+......+.+++|++|++|+++++.  . ..+. .+.++++|++++++++.    ++. ++.+..+ ++|+.
T Consensus        42 ~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~--i-~~~~-~l~~l~~l~~l~~~~n~----~~~-i~~l~~l-~~L~~  111 (227)
T d1h6ua2          42 GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ--I-TDLA-PLKNLTKITELELSGNP----LKN-VSAIAGL-QSIKT  111 (227)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC--C-CCCG-GGTTCCSCCEEECCSCC----CSC-CGGGTTC-TTCCE
T ss_pred             CcCEEECCCCCCCcchhHhcCCCCcEeecCCce--e-eccc-ccccccccccccccccc----ccc-ccccccc-ccccc
Confidence            455555333333333557788888888888875  2 2222 37778888888887631    122 3455555 66666


Q ss_pred             EEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCC
Q 045118           83 LSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPC  162 (221)
Q Consensus        83 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~  162 (221)
                      ++++++.....  ..+...+.++.+.++.+..... .  . ....++|+.|++.++. +.++. .++.+++|+.|++++|
T Consensus       112 l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~-~--~-~~~~~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~Ls~n  183 (227)
T d1h6ua2         112 LDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI-S--P-LAGLTNLQYLSIGNAQ-VSDLT-PLANLSKLTTLKADDN  183 (227)
T ss_dssp             EECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G--G-GGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSS
T ss_pred             ccccccccccc--chhccccchhhhhchhhhhchh-h--h-hccccccccccccccc-cccch-hhcccccceecccCCC
Confidence            66666654422  2344455555555544433221 1  1 2244556666665554 33332 2445566666666653


Q ss_pred             ccccCcchhhccCCcCcEEEccCCC
Q 045118          163 AYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       163 ~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                       .++.++ .+.++++|++|++.+++
T Consensus       184 -~l~~l~-~l~~l~~L~~L~Ls~N~  206 (227)
T d1h6ua2         184 -KISDIS-PLASLPNLIEVHLKNNQ  206 (227)
T ss_dssp             -CCCCCG-GGGGCTTCCEEECTTSC
T ss_pred             -ccCCCh-hhcCCCCCCEEECcCCc
Confidence             445544 25556666666666553

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.7e-13  Score=106.27  Aligned_cols=153  Identities=18%  Similarity=0.120  Sum_probs=109.1

Q ss_pred             CcceeceecCCCC--ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecC-----cee----eehhh--
Q 045118            3 NLIFISALHPSSC--TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKG-----KMW----QLSRM--   69 (221)
Q Consensus         3 ~L~~L~~~~~~~~--~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-----~~~----~L~~L--   69 (221)
                      +++.|..-+....  .+..++++++|++|++++|.   ...++ .++.+++|++|+++.+.     ..+    +|+.+  
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~---l~~l~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE---LTKLQ-VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC---CCEEE-CCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCcCHHHhhcccccccccccccc---ccccc-cccccccccccccccccccccccccccccccccccc
Confidence            4555553222222  33557888888888888874   23333 34667777887777631     000    22222  


Q ss_pred             -------cc--ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEecccccc
Q 045118           70 -------IL--SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLW  140 (221)
Q Consensus        70 -------lp--~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~  140 (221)
                             ++  .+..+ .+++.|++.+|.+...+...+..+++++.+++++|.+... .+.. +..+++|++|+|+++. 
T Consensus       108 ~~~~~~~~~~~~~~~l-~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~-~~~~-~~~l~~L~~L~Ls~N~-  183 (266)
T d1p9ag_         108 SFNRLTSLPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL-PAGL-LNGLENLDTLLLQENS-  183 (266)
T ss_dssp             CSSCCCCCCSSTTTTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC-CTTT-TTTCTTCCEEECCSSC-
T ss_pred             cccccceeeccccccc-cccccccccccccceeccccccccccchhccccccccccc-Cccc-cccccccceeecccCC-
Confidence                   22  45566 8999999999999988777788899999999999987652 1223 5678999999999998 


Q ss_pred             ccceeeCCCCCCCccEEEecCCc
Q 045118          141 LEEWTMGAGAMPKLESLILNPCA  163 (221)
Q Consensus       141 l~~~~~~~~~l~~L~~L~l~~~~  163 (221)
                      ++.+|..+..+++|+.|++++++
T Consensus       184 L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         184 LYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CCCCCTTTTTTCCCSEEECCSCC
T ss_pred             CcccChhHCCCCCCCEEEecCCC
Confidence            89998888889999999999876

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=9.9e-13  Score=102.74  Aligned_cols=175  Identities=19%  Similarity=0.104  Sum_probs=124.4

Q ss_pred             CcceeceecCCCC--ChhhcCCCCCccEEEEEecCCc----------------------cc-cchhHhhccCCCCcEEEe
Q 045118            3 NLIFISALHPSSC--TPDILGRLPNVRTFRISGDLSY----------------------YH-SGVSKSLCKLHKLECLKL   57 (221)
Q Consensus         3 ~L~~L~~~~~~~~--~~~~l~~l~~Lr~L~l~~~~~~----------------------~~-~~~~~~l~~l~~L~~L~l   57 (221)
                      ++++|..-+....  .+..+.++++|++|+++++...                      .. ...+..+.++++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            4556653322222  3356889999999999887510                      00 111445677777888877


Q ss_pred             eecCceeeehhhcc--ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEec
Q 045118           58 VNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHL  135 (221)
Q Consensus        58 ~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L  135 (221)
                      +.+.    +.. ++  .+... ++|+.+++.+|.+...+...++.+++|+.|++++|.+... .+.. +.++++|+.+.+
T Consensus       113 ~~n~----~~~-~~~~~~~~~-~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l-~~~~-f~~l~~L~~l~l  184 (284)
T d1ozna_         113 DRCG----LQE-LGPGLFRGL-AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-PERA-FRGLHSLDRLLL  184 (284)
T ss_dssp             TTSC----CCC-CCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-CTTT-TTTCTTCCEEEC
T ss_pred             CCcc----ccc-ccccccchh-cccchhhhccccccccChhHhccccchhhcccccCccccc-chhh-hccccccchhhh
Confidence            7631    111 22  45556 8999999999999887777888899999999998887541 1223 567889999999


Q ss_pred             cccccccce-eeCCCCCCCccEEEecCCccccCc-chhhccCCcCcEEEccCCC
Q 045118          136 KSMLWLEEW-TMGAGAMPKLESLILNPCAYLRKL-PEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       136 ~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~l~l~~~~  187 (221)
                      .++. +..+ +..++.+++|+.|+++++. +..+ +..++.+++|+++++.+++
T Consensus       185 ~~N~-l~~i~~~~f~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         185 HQNR-VAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             CSSC-CCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             hhcc-ccccChhHhhhhhhcccccccccc-cccccccccccccccCEEEecCCC
Confidence            9888 6656 5667889999999999854 4555 4578899999999999854

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.41  E-value=1.1e-12  Score=98.16  Aligned_cols=143  Identities=23%  Similarity=0.283  Sum_probs=110.8

Q ss_pred             CCCcceeceecCCCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCc
Q 045118            1 LKNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSL   80 (221)
Q Consensus         1 L~~L~~L~~~~~~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L   80 (221)
                      +++|++|..-.........++.+++|+.|+++++.   ...++ .+.++++|+.|+++++..    .. ++.+..+ +++
T Consensus        67 l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~---i~~l~-~l~~l~~L~~L~l~~~~~----~~-~~~l~~l-~~l  136 (210)
T d1h6ta2          67 LPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENK---VKDLS-SLKDLKKLKSLSLEHNGI----SD-INGLVHL-PQL  136 (210)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC---CCCGG-GGTTCTTCCEEECTTSCC----CC-CGGGGGC-TTC
T ss_pred             CCCCCEEeCCCccccCccccccCcccccccccccc---ccccc-cccccccccccccccccc----cc-ccccccc-ccc
Confidence            46777776444333344567899999999999985   34455 588999999999987421    22 5577788 899


Q ss_pred             cEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEec
Q 045118           81 TQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILN  160 (221)
Q Consensus        81 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~  160 (221)
                      +.+++++|.+...  ..++.+++|+.+++++|.+.+  ++ . +..+++|+.|++++|. +++++ .+..+++|+.|+++
T Consensus       137 ~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~--i~-~-l~~l~~L~~L~Ls~N~-i~~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         137 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD--IV-P-LAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC--CG-G-GTTCTTCCEEECCSSC-CCBCG-GGTTCTTCSEEEEE
T ss_pred             ccccccccccccc--ccccccccccccccccccccc--cc-c-ccCCCCCCEEECCCCC-CCCCh-hhcCCCCCCEEEcc
Confidence            9999999998754  467789999999999888764  33 3 5689999999999987 88876 46779999999987


Q ss_pred             C
Q 045118          161 P  161 (221)
Q Consensus       161 ~  161 (221)
                      +
T Consensus       209 ~  209 (210)
T d1h6ta2         209 S  209 (210)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.41  E-value=1.2e-12  Score=103.17  Aligned_cols=176  Identities=19%  Similarity=0.159  Sum_probs=98.3

Q ss_pred             CCcceeceecCCCC-Ch-hhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecC-cee------e-------
Q 045118            2 KNLIFISALHPSSC-TP-DILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKG-KMW------Q-------   65 (221)
Q Consensus         2 ~~L~~L~~~~~~~~-~~-~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~------~-------   65 (221)
                      ++++.|..-+.... ++ .++.++++|++|+++.+.  .....+..+.++++|++|+++++. +.+      .       
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~--~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~  108 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK--ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVH  108 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECC
T ss_pred             CCCCEEECcCCcCCCcChhHhhcccccccccccccc--ccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhcc
Confidence            34566653333222 33 468899999999999886  444456778899999999987631 000      0       


Q ss_pred             ---ehhh--------------------------cc-ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccC
Q 045118           66 ---LSRM--------------------------IL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYL  115 (221)
Q Consensus        66 ---L~~L--------------------------lp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  115 (221)
                         +..+                          .+ .+..+ ++|+.+++.+|.+...+.   ..+++|+.|++++|...
T Consensus       109 ~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l-~~L~~l~l~~n~l~~l~~---~~~~~L~~L~l~~n~~~  184 (305)
T d1xkua_         109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM-KKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKIT  184 (305)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC-TTCCEEECCSSCCCSCCS---SCCTTCSEEECTTSCCC
T ss_pred             ccchhhhhhhhhhccccccccccccccccccCCCccccccc-cccCccccccCCccccCc---ccCCccCEEECCCCcCC
Confidence               1111                          01 23444 566666766666554331   12456666666555433


Q ss_pred             CceeeeeCCCCCCcccEEecccccccccee-eCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118          116 ERKLACVGCSSFSQLKILHLKSMLWLEEWT-MGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       116 ~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      .. .+.. +..++.++.|+++++. +.+++ ..+..+++|+.|++++| .++.+|.++..+++|++|+++++.
T Consensus       185 ~~-~~~~-~~~~~~l~~L~~s~n~-l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N~  253 (305)
T d1xkua_         185 KV-DAAS-LKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN  253 (305)
T ss_dssp             EE-CTGG-GTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC
T ss_pred             CC-ChhH-hhcccccccccccccc-ccccccccccccccceeeecccc-cccccccccccccCCCEEECCCCc
Confidence            21 1222 3445556666666554 44442 22344566666666663 455566566666666666666543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.40  E-value=1.6e-12  Score=105.09  Aligned_cols=149  Identities=22%  Similarity=0.301  Sum_probs=87.1

Q ss_pred             hcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhh
Q 045118           19 ILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTL   98 (221)
Q Consensus        19 ~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l   98 (221)
                      ..+.+++|++|+++++.   ...+ +.+..+++|+.|++.++    .+.. ++.+..+ ++|+.|+++++.+...+  .+
T Consensus       214 ~~~~~~~L~~L~l~~n~---l~~~-~~l~~l~~L~~L~l~~n----~l~~-~~~~~~~-~~L~~L~l~~~~l~~~~--~~  281 (384)
T d2omza2         214 PLGILTNLDELSLNGNQ---LKDI-GTLASLTNLTDLDLANN----QISN-LAPLSGL-TKLTELKLGANQISNIS--PL  281 (384)
T ss_dssp             GGGGCTTCCEEECCSSC---CCCC-GGGGGCTTCSEEECCSS----CCCC-CGGGTTC-TTCSEEECCSSCCCCCG--GG
T ss_pred             cccccCCCCEEECCCCC---CCCc-chhhcccccchhccccC----ccCC-CCccccc-ccCCEeeccCcccCCCC--cc
Confidence            35667788888888774   2333 35677888888888763    1122 3455566 67777777777665432  45


Q ss_pred             ccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcC
Q 045118           99 EKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSL  178 (221)
Q Consensus        99 ~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L  178 (221)
                      ..++.++.+.+..|.+.+  +. . ...++.++.|+++++. +++++ .+..+++|++|++++| .++.++ .+..+++|
T Consensus       282 ~~~~~l~~l~~~~n~l~~--~~-~-~~~~~~l~~L~ls~n~-l~~l~-~l~~l~~L~~L~L~~n-~l~~l~-~l~~l~~L  353 (384)
T d2omza2         282 AGLTALTNLELNENQLED--IS-P-ISNLKNLTYLTLYFNN-ISDIS-PVSSLTKLQRLFFANN-KVSDVS-SLANLTNI  353 (384)
T ss_dssp             TTCTTCSEEECCSSCCSC--CG-G-GGGCTTCSEEECCSSC-CSCCG-GGGGCTTCCEEECCSS-CCCCCG-GGGGCTTC
T ss_pred             cccccccccccccccccc--cc-c-cchhcccCeEECCCCC-CCCCc-ccccCCCCCEEECCCC-CCCCCh-hHcCCCCC
Confidence            556666666665555443  11 1 3345566666666554 45443 2445666666666664 444544 35566666


Q ss_pred             cEEEccCCC
Q 045118          179 CKLELHWPQ  187 (221)
Q Consensus       179 ~~l~l~~~~  187 (221)
                      ++|++.++.
T Consensus       354 ~~L~l~~N~  362 (384)
T d2omza2         354 NWLSAGHNQ  362 (384)
T ss_dssp             CEEECCSSC
T ss_pred             CEEECCCCc
Confidence            666666543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.7e-12  Score=100.22  Aligned_cols=156  Identities=19%  Similarity=0.153  Sum_probs=119.3

Q ss_pred             CCccEEEEEecCCccccchh-HhhccCCCCcEEEeeecC-cee---------eehhh----------c-c-ccCcCCCCc
Q 045118           24 PNVRTFRISGDLSYYHSGVS-KSLCKLHKLECLKLVNKG-KMW---------QLSRM----------I-L-SEYKFPPSL   80 (221)
Q Consensus        24 ~~Lr~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~-~~~---------~L~~L----------l-p-~l~~~~~~L   80 (221)
                      +++++|++++|.   ...++ ..+.++++|++|+++++. ..+         .+.++          + + .+..+ ++|
T Consensus        32 ~~~~~L~Ls~N~---i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l-~~L  107 (284)
T d1ozna_          32 AASQRIFLHGNR---ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL-GRL  107 (284)
T ss_dssp             TTCSEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTC-TTC
T ss_pred             CCCCEEECcCCc---CCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhccc-ccC
Confidence            578999999995   44555 579999999999998731 110         11111          3 3 67778 899


Q ss_pred             cEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceee-eeCCCCCCcccEEeccccccccceee-CCCCCCCccEEE
Q 045118           81 TQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLA-CVGCSSFSQLKILHLKSMLWLEEWTM-GAGAMPKLESLI  158 (221)
Q Consensus        81 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~-~~~~~~~~~L~~L~L~~~~~l~~~~~-~~~~l~~L~~L~  158 (221)
                      +.|++++|.+.......+...++|+.+++++|.+..  ++ .. +..+++|+.|++.++. ++.++. .+..+++|+.+.
T Consensus       108 ~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~--i~~~~-f~~~~~L~~L~l~~N~-l~~l~~~~f~~l~~L~~l~  183 (284)
T d1ozna_         108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA--LPDDT-FRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLL  183 (284)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTT-TTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEE
T ss_pred             CEEecCCcccccccccccchhcccchhhhccccccc--cChhH-hccccchhhcccccCc-ccccchhhhccccccchhh
Confidence            999999999887666678889999999999888765  32 23 5568899999999987 787743 456789999999


Q ss_pred             ecCCccccCcchhhccCCcCcEEEccCCC
Q 045118          159 LNPCAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       159 l~~~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      +++|....-.|..+..+++|+++++..+.
T Consensus       184 l~~N~l~~i~~~~f~~l~~L~~L~l~~N~  212 (284)
T d1ozna_         184 LHQNRVAHVHPHAFRDLGRLMTLYLFANN  212 (284)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             hhhccccccChhHhhhhhhcccccccccc
Confidence            99865444447788999999999998865

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.38  E-value=2.4e-12  Score=101.75  Aligned_cols=109  Identities=20%  Similarity=0.137  Sum_probs=70.2

Q ss_pred             CCccEEEEEecCCccccchhHhhccCCCCcEEEeee-cCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhhccC
Q 045118           24 PNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVN-KGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKL  101 (221)
Q Consensus        24 ~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l  101 (221)
                      .++++|+++++.......+|+.++++++|++|++++ +    ++..-+| .++.+ ++|++|++++|.+....+..+..+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N----~l~g~iP~~i~~L-~~L~~L~Ls~N~l~~~~~~~~~~~  124 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN----NLVGPIPPAIAKL-TQLHYLYITHTNVSGAIPDFLSQI  124 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEET----TEESCCCGGGGGC-TTCSEEEEEEECCEEECCGGGGGC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcccccccccccc----ccccccccccccc-cccchhhhccccccccccccccch
Confidence            368899999986222336889999999999999986 3    1110156 77777 788888888887765544555566


Q ss_pred             CCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccc
Q 045118          102 PHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSML  139 (221)
Q Consensus       102 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~  139 (221)
                      ++|+.++++.|.+... ++.. +..++.++.++++++.
T Consensus       125 ~~L~~l~l~~N~~~~~-~p~~-l~~l~~L~~l~l~~n~  160 (313)
T d1ogqa_         125 KTLVTLDFSYNALSGT-LPPS-ISSLPNLVGITFDGNR  160 (313)
T ss_dssp             TTCCEEECCSSEEESC-CCGG-GGGCTTCCEEECCSSC
T ss_pred             hhhccccccccccccc-Cchh-hccCcccceeeccccc
Confidence            6666666665554332 3333 4445555555555443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.3e-13  Score=105.75  Aligned_cols=163  Identities=18%  Similarity=0.149  Sum_probs=111.9

Q ss_pred             hhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhh-cc-ccCcCCCCccEEEeeccc-CCCC
Q 045118           17 PDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRM-IL-SEYKFPPSLTQLSLSNTE-LMED   93 (221)
Q Consensus        17 ~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L-lp-~l~~~~~~L~~L~l~~~~-~~~~   93 (221)
                      ...+.++++|++|+++++.  ..+..+..+.++++|++|++++...   +..- +. ....+ ++|++|++++|. +...
T Consensus        64 ~~l~~~c~~L~~L~L~~~~--l~~~~~~~l~~~~~L~~L~Ls~c~~---itd~~l~~l~~~~-~~L~~L~ls~c~~~~~~  137 (284)
T d2astb2          64 HGILSQCSKLQNLSLEGLR--LSDPIVNTLAKNSNLVRLNLSGCSG---FSEFALQTLLSSC-SRLDELNLSWCFDFTEK  137 (284)
T ss_dssp             HHHHTTBCCCSEEECTTCB--CCHHHHHHHTTCTTCSEEECTTCBS---CCHHHHHHHHHHC-TTCCEEECCCCTTCCHH
T ss_pred             HHHHHhCCCcccccccccC--CCcHHHHHHhcCCCCcCcccccccc---ccccccchhhHHH-Hhccccccccccccccc
Confidence            3447788999999988885  5667778888889999999976210   0100 22 22445 899999999875 3322


Q ss_pred             Cch-hhc-cCCCCcEEEecCCc--cCCceeeeeCCCCCCcccEEeccccccccce-eeCCCCCCCccEEEecCCccccCc
Q 045118           94 PMP-TLE-KLPHLEVLKLKQNS--YLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMGAGAMPKLESLILNPCAYLRKL  168 (221)
Q Consensus        94 ~~~-~l~-~l~~L~~L~l~~~~--~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~l~~~  168 (221)
                      ... .+. ..++|+.|+++++.  +....+... ...+|+|++|++++|..+++- ...+..+++|++|++++|..++.-
T Consensus       138 ~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l-~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~  216 (284)
T d2astb2         138 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE  216 (284)
T ss_dssp             HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred             cchhhhcccccccchhhhccccccccccccccc-ccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChH
Confidence            221 233 35789999997653  222223323 345789999999998766543 344567899999999999877643


Q ss_pred             -chhhccCCcCcEEEccCC
Q 045118          169 -PEELWCIKSLCKLELHWP  186 (221)
Q Consensus       169 -~~~~~~l~~L~~l~l~~~  186 (221)
                       ...++++++|++|++.+|
T Consensus       217 ~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         217 TLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGGGGCTTCCEEECTTS
T ss_pred             HHHHHhcCCCCCEEeeeCC
Confidence             345788999999999887

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=9.4e-14  Score=100.01  Aligned_cols=104  Identities=13%  Similarity=0.114  Sum_probs=51.9

Q ss_pred             CCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceee--CCCCCCCcc
Q 045118           78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTM--GAGAMPKLE  155 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~--~~~~l~~L~  155 (221)
                      ++|++|++++|.+...  +.++.+++|++|++++|.+..  ++..-...+++|+.|++.+|. +.+++.  .+..+++|+
T Consensus        41 ~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~--l~~~~~~~l~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~  115 (162)
T d1a9na_          41 DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR--IGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLT  115 (162)
T ss_dssp             TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE--ECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCC
T ss_pred             ccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccC--CCccccccccccccceecccc-ccccccccccccccccc
Confidence            4555555555554432  234445555555555554432  211101234555555555554 333321  234466666


Q ss_pred             EEEecCCccccCcc----hhhccCCcCcEEEccCCC
Q 045118          156 SLILNPCAYLRKLP----EELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       156 ~L~l~~~~~l~~~~----~~~~~l~~L~~l~l~~~~  187 (221)
                      ++++.+|+ +...|    ..+..+|+|+.|+-....
T Consensus       116 ~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~~~i~  150 (162)
T d1a9na_         116 YLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK  150 (162)
T ss_dssp             EEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             hhhcCCCc-cccccchHHHHHHHCCCcCeeCCCCCC
Confidence            66666643 33333    246778888888765544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.36  E-value=3.4e-12  Score=94.65  Aligned_cols=139  Identities=22%  Similarity=0.271  Sum_probs=104.8

Q ss_pred             CCCcceeceecCCCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCc
Q 045118            1 LKNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSL   80 (221)
Q Consensus         1 L~~L~~L~~~~~~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L   80 (221)
                      +++|++|...+........++++++|++|+++.+.   ...++ .+.++++|+.|+++++..    .. ++.+..+ ++|
T Consensus        61 l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~---~~~~~-~l~~l~~L~~L~l~~~~~----~~-~~~~~~l-~~L  130 (199)
T d2omxa2          61 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ---IADIT-PLANLTNLTGLTLFNNQI----TD-IDPLKNL-TNL  130 (199)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC---CCCCG-GGTTCTTCSEEECCSSCC----CC-CGGGTTC-TTC
T ss_pred             CCCcCcCccccccccCcccccCCcccccccccccc---ccccc-cccccccccccccccccc----cc-ccccchh-hhh
Confidence            45677776444333344458999999999999985   33333 478999999999987411    11 4467788 999


Q ss_pred             cEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEE
Q 045118           81 TQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESL  157 (221)
Q Consensus        81 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L  157 (221)
                      +.|++++|.+...  +.+..++++++|++.+|.+..  ++ . ++++++|+.|++++|. +++++ .++.+++|+.|
T Consensus       131 ~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~--l~-~-l~~l~~L~~L~ls~N~-i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         131 NRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTD--LK-P-LANLTTLERLDISSNK-VSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             SEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC--CG-G-GTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEE
T ss_pred             HHhhhhhhhhccc--ccccccccccccccccccccC--Cc-c-ccCCCCCCEEECCCCC-CCCCc-cccCCCCCCcC
Confidence            9999999998754  468899999999999887765  33 3 6689999999999997 88775 35668888765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.31  E-value=1.2e-11  Score=97.34  Aligned_cols=107  Identities=21%  Similarity=0.193  Sum_probs=87.6

Q ss_pred             CCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccE
Q 045118           77 PPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLES  156 (221)
Q Consensus        77 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~  156 (221)
                      +++|+.|++++|.........+..++.++.|++++|.+... .+.. +..+++|++|+|++|. ++.++.++..+++|+.
T Consensus       170 ~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~-~~~~-~~~l~~L~~L~L~~N~-L~~lp~~l~~l~~L~~  246 (305)
T d1xkua_         170 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV-DNGS-LANTPHLRELHLNNNK-LVKVPGGLADHKYIQV  246 (305)
T ss_dssp             CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE-CTTT-GGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCE
T ss_pred             CCccCEEECCCCcCCCCChhHhhcccccccccccccccccc-cccc-ccccccceeeeccccc-ccccccccccccCCCE
Confidence            38999999999988876667888999999999998877552 1223 5568999999999997 8899888888999999


Q ss_pred             EEecCCccccCcchh-------hccCCcCcEEEccCCC
Q 045118          157 LILNPCAYLRKLPEE-------LWCIKSLCKLELHWPQ  187 (221)
Q Consensus       157 L~l~~~~~l~~~~~~-------~~~l~~L~~l~l~~~~  187 (221)
                      |++++| .++.++..       ....++|+.+++.+++
T Consensus       247 L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         247 VYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             EECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             EECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            999994 57766532       3457889999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.30  E-value=2.2e-11  Score=98.21  Aligned_cols=148  Identities=22%  Similarity=0.288  Sum_probs=78.7

Q ss_pred             hhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchh
Q 045118           18 DILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPT   97 (221)
Q Consensus        18 ~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~   97 (221)
                      +.++.+++|+.|+++++.  . ..++ .+..+++|++|+++++    .+.. ++.+..+ +.++.+.+..|.+...  ..
T Consensus       235 ~~l~~l~~L~~L~l~~n~--l-~~~~-~~~~~~~L~~L~l~~~----~l~~-~~~~~~~-~~l~~l~~~~n~l~~~--~~  302 (384)
T d2omza2         235 GTLASLTNLTDLDLANNQ--I-SNLA-PLSGLTKLTELKLGAN----QISN-ISPLAGL-TALTNLELNENQLEDI--SP  302 (384)
T ss_dssp             GGGGGCTTCSEEECCSSC--C-CCCG-GGTTCTTCSEEECCSS----CCCC-CGGGTTC-TTCSEEECCSSCCSCC--GG
T ss_pred             chhhcccccchhccccCc--c-CCCC-cccccccCCEeeccCc----ccCC-CCccccc-cccccccccccccccc--cc
Confidence            345556666666666653  2 2222 2555666666666552    1111 3344445 5666666666655432  34


Q ss_pred             hccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCc
Q 045118           98 LEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKS  177 (221)
Q Consensus        98 l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~  177 (221)
                      +..+++++.|++++|.+.+  ++ . +..+++|+.|++++|. +++++ .++.+++|++|++++| .++.++. +.++++
T Consensus       303 ~~~~~~l~~L~ls~n~l~~--l~-~-l~~l~~L~~L~L~~n~-l~~l~-~l~~l~~L~~L~l~~N-~l~~l~~-l~~l~~  374 (384)
T d2omza2         303 ISNLKNLTYLTLYFNNISD--IS-P-VSSLTKLQRLFFANNK-VSDVS-SLANLTNINWLSAGHN-QISDLTP-LANLTR  374 (384)
T ss_dssp             GGGCTTCSEEECCSSCCSC--CG-G-GGGCTTCCEEECCSSC-CCCCG-GGGGCTTCCEEECCSS-CCCBCGG-GTTCTT
T ss_pred             cchhcccCeEECCCCCCCC--Cc-c-cccCCCCCEEECCCCC-CCCCh-hHcCCCCCCEEECCCC-cCCCChh-hccCCC
Confidence            5556666666666655543  22 2 3356666666666664 55543 3445666666666653 4444442 556666


Q ss_pred             CcEEEccC
Q 045118          178 LCKLELHW  185 (221)
Q Consensus       178 L~~l~l~~  185 (221)
                      |++|++++
T Consensus       375 L~~L~L~~  382 (384)
T d2omza2         375 ITQLGLND  382 (384)
T ss_dssp             CSEEECCC
T ss_pred             CCEeeCCC
Confidence            66666653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.4e-12  Score=102.05  Aligned_cols=175  Identities=18%  Similarity=0.132  Sum_probs=113.2

Q ss_pred             CCcceeceecCC--CCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCC
Q 045118            2 KNLIFISALHPS--SCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPP   78 (221)
Q Consensus         2 ~~L~~L~~~~~~--~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~   78 (221)
                      ++|++|..-+..  +..+..++++++|++|+++++..-....+......+++|++|++++....- =.. ++ .+...++
T Consensus        71 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~-~~~-~~~~~~~~~~  148 (284)
T d2astb2          71 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT-EKH-VQVAVAHVSE  148 (284)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC-HHH-HHHHHHHSCT
T ss_pred             CCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccc-ccc-chhhhccccc
Confidence            567777643332  226777899999999999987421222344455678999999998721100 011 22 3334447


Q ss_pred             CccEEEeeccc--CCCCCchh-hccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeCCCCCCCc
Q 045118           79 SLTQLSLSNTE--LMEDPMPT-LEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMGAGAMPKL  154 (221)
Q Consensus        79 ~L~~L~l~~~~--~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~L  154 (221)
                      +|+.|+++++.  +....... ...+++|++|++++|....+..... +..+++|++|++++|..+.+- ...++.+|+|
T Consensus       149 ~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~-l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L  227 (284)
T d2astb2         149 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQLNYLQHLSLSRCYDIIPETLLELGEIPTL  227 (284)
T ss_dssp             TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccCCCchhhhh-hcccCcCCEEECCCCCCCChHHHHHHhcCCCC
Confidence            99999999864  33333333 3578999999998876433223334 667899999999999866644 2345678999


Q ss_pred             cEEEecCCccccCcchhhccCCcCc
Q 045118          155 ESLILNPCAYLRKLPEELWCIKSLC  179 (221)
Q Consensus       155 ~~L~l~~~~~l~~~~~~~~~l~~L~  179 (221)
                      +.|++.+|-.-..++.....+|+|+
T Consensus       228 ~~L~l~~~~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         228 KTLQVFGIVPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             CEEECTTSSCTTCHHHHHHHSTTSE
T ss_pred             CEEeeeCCCCHHHHHHHHHhCcccc
Confidence            9999999743333333345677764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.24  E-value=4.7e-11  Score=89.97  Aligned_cols=164  Identities=18%  Similarity=0.237  Sum_probs=122.6

Q ss_pred             CCCcceeceecCCCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCc
Q 045118            1 LKNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSL   80 (221)
Q Consensus         1 L~~L~~L~~~~~~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L   80 (221)
                      |++|+.|............++++++++.+.++++.   ...+ +.+.++++|+++++++...    .. ++.+... +.+
T Consensus        62 l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~---~~~i-~~l~~l~~L~~l~l~~~~~----~~-~~~~~~~-~~~  131 (227)
T d1h6ua2          62 LNNLIGLELKDNQITDLAPLKNLTKITELELSGNP---LKNV-SAIAGLQSIKTLDLTSTQI----TD-VTPLAGL-SNL  131 (227)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCC---CSCC-GGGTTCTTCCEEECTTSCC----CC-CGGGTTC-TTC
T ss_pred             CCCCcEeecCCceeecccccccccccccccccccc---cccc-ccccccccccccccccccc----cc-cchhccc-cch
Confidence            46677776443333344458999999999999885   2333 3578899999999987311    11 3345556 889


Q ss_pred             cEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEec
Q 045118           81 TQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILN  160 (221)
Q Consensus        81 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~  160 (221)
                      +.+.+.++.+...  ..+..+++|++|.+++|....  .. . ++.+++|+.|++++|. +++++ .++.+++|++|+++
T Consensus       132 ~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~--~~-~-l~~l~~L~~L~Ls~n~-l~~l~-~l~~l~~L~~L~Ls  203 (227)
T d1h6ua2         132 QVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSD--LT-P-LANLSKLTTLKADDNK-ISDIS-PLASLPNLIEVHLK  203 (227)
T ss_dssp             CEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCC--CG-G-GTTCTTCCEEECCSSC-CCCCG-GGGGCTTCCEEECT
T ss_pred             hhhhchhhhhchh--hhhcccccccccccccccccc--ch-h-hcccccceecccCCCc-cCCCh-hhcCCCCCCEEECc
Confidence            9999988887643  357789999999998877643  22 3 5679999999999986 78775 36679999999999


Q ss_pred             CCccccCcchhhccCCcCcEEEcc
Q 045118          161 PCAYLRKLPEELWCIKSLCKLELH  184 (221)
Q Consensus       161 ~~~~l~~~~~~~~~l~~L~~l~l~  184 (221)
                      +| .+++++ .++++++|++|+++
T Consensus       204 ~N-~lt~i~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         204 NN-QISDVS-PLANTSNLFIVTLT  225 (227)
T ss_dssp             TS-CCCBCG-GGTTCTTCCEEEEE
T ss_pred             CC-cCCCCc-ccccCCCCCEEEee
Confidence            96 688886 47899999999885

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.21  E-value=8.6e-12  Score=85.48  Aligned_cols=86  Identities=27%  Similarity=0.369  Sum_probs=40.7

Q ss_pred             cCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCC-chhh
Q 045118           20 LGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDP-MPTL   98 (221)
Q Consensus        20 l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~-~~~l   98 (221)
                      ++++++|++|++++|.   ...+|+.+..+++|++|+++++    .++. +|.+..+ ++|++|++++|.+...+ ...+
T Consensus        16 l~~l~~L~~L~ls~N~---l~~lp~~~~~l~~L~~L~l~~N----~i~~-l~~~~~l-~~L~~L~l~~N~i~~~~~~~~l   86 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNR---LRALPPALAALRCLEVLQASDN----ALEN-VDGVANL-PRLQELLLCNNRLQQSAAIQPL   86 (124)
T ss_dssp             GGGGTTCCEEECCSSC---CCCCCGGGGGCTTCCEEECCSS----CCCC-CGGGTTC-SSCCEEECCSSCCCSSSTTGGG
T ss_pred             cccCCCCCEEECCCCc---cCcchhhhhhhhcccccccccc----cccc-cCccccc-cccCeEECCCCccCCCCCchhh
Confidence            4455555555555553   3344444555555555555543    1122 3444444 55555555555554332 2334


Q ss_pred             ccCCCCcEEEecCCcc
Q 045118           99 EKLPHLEVLKLKQNSY  114 (221)
Q Consensus        99 ~~l~~L~~L~l~~~~~  114 (221)
                      +.+++|+.|++++|.+
T Consensus        87 ~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          87 VSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             GGCTTCCEEECTTSGG
T ss_pred             cCCCCCCEEECCCCcC
Confidence            4455555555554443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=6.6e-12  Score=90.12  Aligned_cols=108  Identities=16%  Similarity=0.133  Sum_probs=44.6

Q ss_pred             CCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhhccC
Q 045118           22 RLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKL  101 (221)
Q Consensus        22 ~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l  101 (221)
                      ++.++|+|+++++.   ...++..+..+++|++|+++++    +++. ++.+..+ ++|+.|++++|.+...+...+..+
T Consensus        16 n~~~lr~L~L~~n~---I~~i~~~~~~l~~L~~L~Ls~N----~i~~-l~~~~~l-~~L~~L~ls~N~i~~l~~~~~~~l   86 (162)
T d1a9na_          16 NAVRDRELDLRGYK---IPVIENLGATLDQFDAIDFSDN----EIRK-LDGFPLL-RRLKTLLVNNNRICRIGEGLDQAL   86 (162)
T ss_dssp             CTTSCEEEECTTSC---CCSCCCGGGGTTCCSEEECCSS----CCCE-ECCCCCC-SSCCEEECCSSCCCEECSCHHHHC
T ss_pred             CcCcCcEEECCCCC---CCccCccccccccCCEEECCCC----CCCc-cCCcccC-cchhhhhcccccccCCCccccccc
Confidence            34444555554442   2223333344445555555443    1122 2333444 445555555554443332233344


Q ss_pred             CCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccc
Q 045118          102 PHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSML  139 (221)
Q Consensus       102 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~  139 (221)
                      ++|+.|++++|.+....-... +..+++|+.+++++|+
T Consensus        87 ~~L~~L~L~~N~i~~~~~l~~-l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          87 PDLTELILTNNSLVELGDLDP-LASLKSLTYLCILRNP  123 (162)
T ss_dssp             TTCCEEECCSCCCCCGGGGGG-GGGCTTCCEEECCSSG
T ss_pred             cccccceeccccccccccccc-cccccccchhhcCCCc
Confidence            455555554444432100011 2334445555554444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.16  E-value=5e-11  Score=81.58  Aligned_cols=86  Identities=26%  Similarity=0.271  Sum_probs=49.0

Q ss_pred             ccccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceee--C
Q 045118           70 ILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTM--G  147 (221)
Q Consensus        70 lp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~--~  147 (221)
                      ++.+..+ ++|++|++++|.+...+ ..++.+++|+.|++++|.+..  ++ . +..+++|+.|+++++. +.+++.  .
T Consensus        13 l~~l~~l-~~L~~L~ls~N~l~~lp-~~~~~l~~L~~L~l~~N~i~~--l~-~-~~~l~~L~~L~l~~N~-i~~~~~~~~   85 (124)
T d1dcea3          13 LCHLEQL-LLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALEN--VD-G-VANLPRLQELLLCNNR-LQQSAAIQP   85 (124)
T ss_dssp             CCCGGGG-TTCCEEECCSSCCCCCC-GGGGGCTTCCEEECCSSCCCC--CG-G-GTTCSSCCEEECCSSC-CCSSSTTGG
T ss_pred             CcccccC-CCCCEEECCCCccCcch-hhhhhhhcccccccccccccc--cC-c-cccccccCeEECCCCc-cCCCCCchh
Confidence            3455555 66666666666666543 345666666666666666544  22 2 4456666666666665 444431  2


Q ss_pred             CCCCCCccEEEecCC
Q 045118          148 AGAMPKLESLILNPC  162 (221)
Q Consensus       148 ~~~l~~L~~L~l~~~  162 (221)
                      ++.+++|+.++++++
T Consensus        86 l~~~~~L~~L~l~~N  100 (124)
T d1dcea3          86 LVSCPRLVLLNLQGN  100 (124)
T ss_dssp             GGGCTTCCEEECTTS
T ss_pred             hcCCCCCCEEECCCC
Confidence            344566666666653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.13  E-value=1.3e-10  Score=85.40  Aligned_cols=86  Identities=23%  Similarity=0.229  Sum_probs=40.3

Q ss_pred             ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceee-eeCCCCCCcccEEeccccccccceee-CCC
Q 045118           72 SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLA-CVGCSSFSQLKILHLKSMLWLEEWTM-GAG  149 (221)
Q Consensus        72 ~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~-~~~~~~~~~L~~L~L~~~~~l~~~~~-~~~  149 (221)
                      .+..+ ++|+.|++++|.+...+...+..+++|++|++++|.+..  ++ .. +.++++|++|+|+++. ++.++. .+.
T Consensus        49 ~f~~l-~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~--l~~~~-F~~l~~L~~L~L~~N~-l~~i~~~~f~  123 (192)
T d1w8aa_          49 LFGRL-PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE--ISNKM-FLGLHQLKTLNLYDNQ-ISCVMPGSFE  123 (192)
T ss_dssp             SGGGC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE--ECSSS-STTCTTCCEEECCSSC-CCEECTTSST
T ss_pred             ccCCC-ceEeeeeccccccccccccccccccccceeeeccccccc--cCHHH-HhCCCcccccccCCcc-ccccCHHHhc
Confidence            33444 555555555555544444444455555555555554432  21 12 3345555555555554 444432 233


Q ss_pred             CCCCccEEEecCC
Q 045118          150 AMPKLESLILNPC  162 (221)
Q Consensus       150 ~l~~L~~L~l~~~  162 (221)
                      .+++|++++++++
T Consensus       124 ~l~~L~~l~L~~N  136 (192)
T d1w8aa_         124 HLNSLTSLNLASN  136 (192)
T ss_dssp             TCTTCCEEECTTC
T ss_pred             CCccccccccccc
Confidence            4455555555543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=6.8e-10  Score=84.03  Aligned_cols=112  Identities=18%  Similarity=0.150  Sum_probs=65.4

Q ss_pred             ccCcCCCCccEEEeecccCCCCCch-hhccCCCCcEEEecCCccCCceeeeeCCCCC-CcccEEeccccccccceeeCCC
Q 045118           72 SEYKFPPSLTQLSLSNTELMEDPMP-TLEKLPHLEVLKLKQNSYLERKLACVGCSSF-SQLKILHLKSMLWLEEWTMGAG  149 (221)
Q Consensus        72 ~l~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~-~~L~~L~L~~~~~l~~~~~~~~  149 (221)
                      .+..+ ++|+++++.+|.+...+.. .+..++.+..+....+.+..  ++...+.++ ..++.+++.++. ++.++....
T Consensus        98 ~~~~l-~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~--i~~~~~~~~~~~l~~L~l~~n~-l~~i~~~~~  173 (242)
T d1xwdc1          98 AFQNL-PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT--IERNSFVGLSFESVILWLNKNG-IQEIHNCAF  173 (242)
T ss_dssp             SEECC-TTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCE--ECTTSSTTSBSSCEEEECCSSC-CCEECTTTT
T ss_pred             ccccc-ccccccccchhhhccccccccccccccccccccccccccc--ccccccccccccceeeeccccc-ccccccccc
Confidence            44555 6777777777666543211 22233344433433322221  111101222 366777777666 677765555


Q ss_pred             CCCCccEEEecCCccccCcchh-hccCCcCcEEEccCCC
Q 045118          150 AMPKLESLILNPCAYLRKLPEE-LWCIKSLCKLELHWPQ  187 (221)
Q Consensus       150 ~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~l~l~~~~  187 (221)
                      ..++++++....++.++.+|.. +.++++|++|++.++.
T Consensus       174 ~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~  212 (242)
T d1xwdc1         174 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR  212 (242)
T ss_dssp             TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC
T ss_pred             cchhhhccccccccccccccHHHhcCCCCCCEEECCCCc
Confidence            5677777777666788888764 6889999999998864

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.11  E-value=9e-11  Score=86.26  Aligned_cols=106  Identities=23%  Similarity=0.196  Sum_probs=63.6

Q ss_pred             CCccEEEeecccCCC-CCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceee-CCCCCCCcc
Q 045118           78 PSLTQLSLSNTELME-DPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTM-GAGAMPKLE  155 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~-~~~~l~~L~  155 (221)
                      +++++|++++|.+.. .+...++.+++|+.|++++|.+... .+.. +..+++|++|+++++. +..++. .+..+++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~-~~~~-~~~~~~L~~L~Ls~N~-l~~l~~~~F~~l~~L~  105 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNA-FEGASHIQELQLGENK-IKEISNKMFLGLHQLK  105 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTT-TTTCTTCCEEECCSCC-CCEECSSSSTTCTTCC
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccc-cccc-cccccccceeeecccc-ccccCHHHHhCCCccc
Confidence            566777777776653 3334566677777777766665432 1222 4456677777777665 666633 355667777


Q ss_pred             EEEecCCccccCcch-hhccCCcCcEEEccCCC
Q 045118          156 SLILNPCAYLRKLPE-ELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       156 ~L~l~~~~~l~~~~~-~~~~l~~L~~l~l~~~~  187 (221)
                      +|++++ +.++.+|. .+..+++|+++++.+++
T Consensus       106 ~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_         106 TLNLYD-NQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             EEECCS-SCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             ccccCC-ccccccCHHHhcCCcccccccccccc
Confidence            777776 44555543 35666777777776644

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.10  E-value=5.9e-13  Score=98.87  Aligned_cols=147  Identities=20%  Similarity=0.206  Sum_probs=95.8

Q ss_pred             CccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhhccCCCC
Q 045118           25 NVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHL  104 (221)
Q Consensus        25 ~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L  104 (221)
                      ..+.+++.... .....++.++..+++|++|+++++    .++. ++.+..+ ++|+.|++++|.+...+ .....+++|
T Consensus        24 ~~~~~~l~~~~-~~i~~l~~sl~~L~~L~~L~Ls~n----~I~~-i~~l~~l-~~L~~L~Ls~N~i~~i~-~~~~~~~~L   95 (198)
T d1m9la_          24 EAEKVELHGMI-PPIEKMDATLSTLKACKHLALSTN----NIEK-ISSLSGM-ENLRILSLGRNLIKKIE-NLDAVADTL   95 (198)
T ss_dssp             TCSCEECCBCC-TTCCCCHHHHHHTTTCCEEECSEE----EESC-CCCHHHH-TTCCEEECCEEEECSCS-SHHHHHHHC
T ss_pred             ccceeeeeccc-CchhhhhhHHhcccccceeECccc----CCCC-cccccCC-ccccChhhccccccccc-ccccccccc
Confidence            34444444331 124566778888888888888874    3343 4566777 88888888888887654 233445678


Q ss_pred             cEEEecCCccCCceeeeeCCCCCCcccEEecccccccccee--eCCCCCCCccEEEecCCccccCcch----------hh
Q 045118          105 EVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWT--MGAGAMPKLESLILNPCAYLRKLPE----------EL  172 (221)
Q Consensus       105 ~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~l~~L~~L~l~~~~~l~~~~~----------~~  172 (221)
                      +.|++++|.+..  ++ . ...+++|+.|++++|. +++++  ..+..+++|+.|++++|+.....+.          .+
T Consensus        96 ~~L~l~~N~i~~--l~-~-~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi  170 (198)
T d1m9la_          96 EELWISYNQIAS--LS-G-IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV  170 (198)
T ss_dssp             CEEECSEEECCC--HH-H-HHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHH
T ss_pred             cccccccccccc--cc-c-ccccccccccccccch-hccccccccccCCCccceeecCCCccccCcccccchhhHHHHHH
Confidence            888888777654  32 2 4457788888888876 66554  2356788888888888642221111          25


Q ss_pred             ccCCcCcEEEcc
Q 045118          173 WCIKSLCKLELH  184 (221)
Q Consensus       173 ~~l~~L~~l~l~  184 (221)
                      ..+|+|+.|+-.
T Consensus       171 ~~lp~L~~LD~~  182 (198)
T d1m9la_         171 KRLPNLKKLDGM  182 (198)
T ss_dssp             HHCSSCCEESSG
T ss_pred             HHCCCcCEeCCc
Confidence            678888887644

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.97  E-value=6.4e-12  Score=93.13  Aligned_cols=129  Identities=21%  Similarity=0.207  Sum_probs=95.0

Q ss_pred             ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccc-cCcCCCCccEEEeecccCCCCC
Q 045118           16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILS-EYKFPPSLTQLSLSNTELMEDP   94 (221)
Q Consensus        16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~-l~~~~~~L~~L~l~~~~~~~~~   94 (221)
                      .+..++.+++|++|+++++.   ...++ .+.++++|++|+++++    .+.. +|. ...+ ++|+.|++++|.+... 
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~---I~~i~-~l~~l~~L~~L~Ls~N----~i~~-i~~~~~~~-~~L~~L~l~~N~i~~l-  108 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNN---IEKIS-SLSGMENLRILSLGRN----LIKK-IENLDAVA-DTLEELWISYNQIASL-  108 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEE---ESCCC-CHHHHTTCCEEECCEE----EECS-CSSHHHHH-HHCCEEECSEEECCCH-
T ss_pred             hhhHHhcccccceeECcccC---CCCcc-cccCCccccChhhccc----cccc-cccccccc-cccccccccccccccc-
Confidence            45678889999999999995   34443 5889999999999985    3344 453 3334 7899999999998753 


Q ss_pred             chhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-----------CCCCCCccEEE
Q 045118           95 MPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-----------AGAMPKLESLI  158 (221)
Q Consensus        95 ~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-----------~~~l~~L~~L~  158 (221)
                       +.+..+++|+.|++++|.+....-... +..+++|+.|++++|+ +...+..           ...+|+|+.|+
T Consensus       109 -~~~~~l~~L~~L~L~~N~i~~~~~~~~-l~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         109 -SGIEKLVNLRVLYMSNNKITNWGEIDK-LAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             -HHHHHHHHSSEEEESEEECCCHHHHHH-HTTTTTCSEEEECSSH-HHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             -ccccccccccccccccchhcccccccc-ccCCCccceeecCCCc-cccCcccccchhhHHHHHHHHCCCcCEeC
Confidence             568889999999999988765211123 5679999999999987 4433222           23477887776

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=3.6e-09  Score=79.93  Aligned_cols=177  Identities=16%  Similarity=0.079  Sum_probs=102.5

Q ss_pred             CcceeceecCCCC-Ch-hhcCCCCCccEEEEEecCCccccchh-HhhccCCCCcEEEeeec--C-----cee----eehh
Q 045118            3 NLIFISALHPSSC-TP-DILGRLPNVRTFRISGDLSYYHSGVS-KSLCKLHKLECLKLVNK--G-----KMW----QLSR   68 (221)
Q Consensus         3 ~L~~L~~~~~~~~-~~-~~l~~l~~Lr~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~--~-----~~~----~L~~   68 (221)
                      ++++|........ ++ ..+.++++|++|+++++.  ....++ ..+.++++++++.+...  -     ..+    +|+.
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~--~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND--VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  107 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCT--TCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhcccc--ccceeeccccccccccccccccccccccccccccccccccccc
Confidence            5677764443333 33 457889999999999885  323222 34566666666665431  0     101    2222


Q ss_pred             h---------ccccCcC--CCCccEEEeecccCCCCCchhhccC-CCCcEEEecCCccCCceeeeeCCCCCCcccEEecc
Q 045118           69 M---------ILSEYKF--PPSLTQLSLSNTELMEDPMPTLEKL-PHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLK  136 (221)
Q Consensus        69 L---------lp~l~~~--~~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~  136 (221)
                      +         .+....+  ...+..+...++.+...+...+..+ ..+..|++++|.+..  ++.. ....++++.+...
T Consensus       108 l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~--i~~~-~~~~~~l~~~~~l  184 (242)
T d1xwdc1         108 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--IHNC-AFNGTQLDELNLS  184 (242)
T ss_dssp             EEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE--ECTT-TTTTCCEEEEECT
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc--cccc-cccchhhhccccc
Confidence            2         2322233  0444444445555554444455554 478889998777653  3333 3344566666544


Q ss_pred             ccccccceeeC-CCCCCCccEEEecCCccccCcch-hhccCCcCcEEEccC
Q 045118          137 SMLWLEEWTMG-AGAMPKLESLILNPCAYLRKLPE-ELWCIKSLCKLELHW  185 (221)
Q Consensus       137 ~~~~l~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~l~l~~  185 (221)
                      .+..+++++.. +..+++|+.|++++ +.++.+|. .+.+++.|+.+++..
T Consensus       185 ~~n~l~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         185 DNNNLEELPNDVFHGASGPVILDISR-TRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             TCTTCCCCCTTTTTTSCCCSEEECTT-SCCCCCCSSSCTTCCEEESSSEES
T ss_pred             cccccccccHHHhcCCCCCCEEECCC-CcCCccCHHHHcCCcccccCcCCC
Confidence            44448888654 57799999999998 45778865 356666666665543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=8.7e-09  Score=72.93  Aligned_cols=103  Identities=18%  Similarity=0.101  Sum_probs=64.3

Q ss_pred             ccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCCCchhhccCCC
Q 045118           26 VRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPH  103 (221)
Q Consensus        26 Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~  103 (221)
                      ...++.++.   .....|..+.++++|++|+++++.   .++. ++  .+..+ ++|+.|++++|++...+..++..+++
T Consensus        10 ~~~l~c~~~---~~~~~p~~l~~l~~l~~L~l~~n~---~l~~-i~~~~f~~l-~~L~~L~Ls~N~l~~i~~~~f~~l~~   81 (156)
T d2ifga3          10 SSGLRCTRD---GALDSLHHLPGAENLTELYIENQQ---HLQH-LELRDLRGL-GELRNLTIVKSGLRFVAPDAFHFTPR   81 (156)
T ss_dssp             SSCEECCSS---CCCTTTTTSCSCSCCSEEECCSCS---SCCE-ECGGGSCSC-CCCSEEECCSSCCCEECTTGGGSCSC
T ss_pred             CCeEEecCC---CCccCcccccCccccCeeecCCCc---cccc-cCchhhccc-cccCcceeeccccCCccccccccccc
Confidence            344444444   234456666777777777776421   1233 33  56777 78888888888877766667777888


Q ss_pred             CcEEEecCCccCCceeeeeCCCCCCcccEEeccccc
Q 045118          104 LEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSML  139 (221)
Q Consensus       104 L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~  139 (221)
                      |++|++++|.+..  ++.. .....+|+.|++++++
T Consensus        82 L~~L~Ls~N~l~~--l~~~-~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          82 LSRLNLSFNALES--LSWK-TVQGLSLQELVLSGNP  114 (156)
T ss_dssp             CCEEECCSSCCSC--CCST-TTCSCCCCEEECCSSC
T ss_pred             ccceeccCCCCcc--cChh-hhccccccccccCCCc
Confidence            8888887777654  3332 2233457777777665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=4.1e-08  Score=69.32  Aligned_cols=105  Identities=17%  Similarity=0.069  Sum_probs=66.1

Q ss_pred             CCccEEEeecccCCCCCchhhccCCCCcEEEecCCc-cCCceeeeeCCCCCCcccEEecccccccccee-eCCCCCCCcc
Q 045118           78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNS-YLERKLACVGCSSFSQLKILHLKSMLWLEEWT-MGAGAMPKLE  155 (221)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~l~~L~  155 (221)
                      ...+.++..++.+...+ ..+..+++|++|+++++. +..  ++...+.++++|+.|+++++. ++.++ .++..+++|+
T Consensus         8 ~~~~~l~c~~~~~~~~p-~~l~~l~~l~~L~l~~n~~l~~--i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~   83 (156)
T d2ifga3           8 HGSSGLRCTRDGALDSL-HHLPGAENLTELYIENQQHLQH--LELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLS   83 (156)
T ss_dssp             SSSSCEECCSSCCCTTT-TTSCSCSCCSEEECCSCSSCCE--ECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCC
T ss_pred             CCCCeEEecCCCCccCc-ccccCccccCeeecCCCccccc--cCchhhccccccCcceeeccc-cCCccccccccccccc
Confidence            33455666665555433 456667777777775554 332  222115567778888887776 77663 3356677888


Q ss_pred             EEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118          156 SLILNPCAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       156 ~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      +|++++ +.++.+|.++....+|++|++.+++
T Consensus        84 ~L~Ls~-N~l~~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          84 RLNLSF-NALESLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             EEECCS-SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             ceeccC-CCCcccChhhhccccccccccCCCc
Confidence            888887 5566776665555567888887765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.47  E-value=6.8e-07  Score=70.12  Aligned_cols=53  Identities=26%  Similarity=0.300  Sum_probs=42.6

Q ss_pred             CCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118          127 FSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ  187 (221)
Q Consensus       127 ~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~  187 (221)
                      +++|++|++++|. ++.++.   .+++|++|++++| .++++|..   +++|++|++.+++
T Consensus       283 ~~~L~~L~Ls~N~-l~~lp~---~~~~L~~L~L~~N-~L~~l~~~---~~~L~~L~L~~N~  335 (353)
T d1jl5a_         283 PPSLEELNVSNNK-LIELPA---LPPRLERLIASFN-HLAEVPEL---PQNLKQLHVEYNP  335 (353)
T ss_dssp             CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC
T ss_pred             CCCCCEEECCCCc-cCcccc---ccCCCCEEECCCC-cCCccccc---cCCCCEEECcCCc
Confidence            5789999999987 777763   3789999999884 57788753   5678999999876

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.29  E-value=7.3e-06  Score=63.99  Aligned_cols=77  Identities=22%  Similarity=0.344  Sum_probs=45.7

Q ss_pred             CCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhhccCC
Q 045118           23 LPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLP  102 (221)
Q Consensus        23 l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~  102 (221)
                      .++|++|+++++.   ...+|+.   ..+|++|++.++.        +..+..+|+.|++|++++|.+...+  ..+.++
T Consensus        57 ~~~L~~L~Ls~N~---l~~lp~~---~~~L~~L~l~~n~--------l~~l~~lp~~L~~L~L~~n~l~~lp--~~~~l~  120 (353)
T d1jl5a_          57 PPHLESLVASCNS---LTELPEL---PQSLKSLLVDNNN--------LKALSDLPPLLEYLGVSNNQLEKLP--ELQNSS  120 (353)
T ss_dssp             CTTCSEEECCSSC---CSSCCCC---CTTCCEEECCSSC--------CSCCCSCCTTCCEEECCSSCCSSCC--CCTTCT
T ss_pred             CCCCCEEECCCCC---Ccccccc---hhhhhhhhhhhcc--------cchhhhhcccccccccccccccccc--chhhhc
Confidence            3566677766663   3344533   3456666666520        1233444466788888887776543  356677


Q ss_pred             CCcEEEecCCccC
Q 045118          103 HLEVLKLKQNSYL  115 (221)
Q Consensus       103 ~L~~L~l~~~~~~  115 (221)
                      +|+.|+++++...
T Consensus       121 ~L~~L~l~~~~~~  133 (353)
T d1jl5a_         121 FLKIIDVDNNSLK  133 (353)
T ss_dssp             TCCEEECCSSCCS
T ss_pred             cceeecccccccc
Confidence            8888887666543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.28  E-value=1.6e-07  Score=74.35  Aligned_cols=42  Identities=29%  Similarity=0.273  Sum_probs=26.4

Q ss_pred             hhcCCCCCccEEEEEecCC--ccccchhHhhccCCCCcEEEeee
Q 045118           18 DILGRLPNVRTFRISGDLS--YYHSGVSKSLCKLHKLECLKLVN   59 (221)
Q Consensus        18 ~~l~~l~~Lr~L~l~~~~~--~~~~~~~~~l~~l~~L~~L~l~~   59 (221)
                      ..+..+++|++|+++.+..  .....+...+...++|++|++++
T Consensus        87 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~  130 (344)
T d2ca6a1          87 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHN  130 (344)
T ss_dssp             HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCS
T ss_pred             HHHhhCCCcccccccccccccccccchhhhhcccccchheeccc
Confidence            4455677777777777641  12234555666677788887765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.22  E-value=1.8e-07  Score=74.04  Aligned_cols=41  Identities=15%  Similarity=0.100  Sum_probs=23.0

Q ss_pred             hcCCCCCccEEEEEecCCc--------cccchhHhhccCCCCcEEEeee
Q 045118           19 ILGRLPNVRTFRISGDLSY--------YHSGVSKSLCKLHKLECLKLVN   59 (221)
Q Consensus        19 ~l~~l~~Lr~L~l~~~~~~--------~~~~~~~~l~~l~~L~~L~l~~   59 (221)
                      .+...++|+.+.++.+...        ....+...+...++|++|++++
T Consensus        54 ~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          54 NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            3556677777777654310        0112334455667777777765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=8.2e-06  Score=65.84  Aligned_cols=113  Identities=19%  Similarity=0.125  Sum_probs=72.1

Q ss_pred             CcceeceecCCCC---ChhhcCCCCCccEEEEEecCC--ccccchhHhhccCCCCcEEEeeecCcee-eehhhcc-ccCc
Q 045118            3 NLIFISALHPSSC---TPDILGRLPNVRTFRISGDLS--YYHSGVSKSLCKLHKLECLKLVNKGKMW-QLSRMIL-SEYK   75 (221)
Q Consensus         3 ~L~~L~~~~~~~~---~~~~l~~l~~Lr~L~l~~~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~L~~Llp-~l~~   75 (221)
                      +|++|++-+....   +...+..++++|.|++++|.-  .....+...+...++|++|+++++.-.- .++. +. .+..
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~-l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC-VLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH-HHHTTCS
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHH-HHHHHhc
Confidence            5677774333222   344466788999999999861  1224566778889999999998741000 0011 11 3332


Q ss_pred             CCCCccEEEeecccCCCCCc----hhhccCCCCcEEEecCCccCC
Q 045118           76 FPPSLTQLSLSNTELMEDPM----PTLEKLPHLEVLKLKQNSYLE  116 (221)
Q Consensus        76 ~~~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~  116 (221)
                      -..+|++|++++|.++....    ..+..+++|++|++++|.+..
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            22579999999998875442    245678899999998887653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=9.5e-07  Score=62.44  Aligned_cols=81  Identities=26%  Similarity=0.238  Sum_probs=47.6

Q ss_pred             CcCCCCccEEEeecccCCCCC--chhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEecccccccccee------
Q 045118           74 YKFPPSLTQLSLSNTELMEDP--MPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWT------  145 (221)
Q Consensus        74 ~~~~~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~------  145 (221)
                      ..+ ++|+.|++++|+++...  ...++.+++|+.|++++|.+....-... . ...+|+.+++.+++ +....      
T Consensus        62 ~~~-~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~-l-~~~~L~~L~L~~Np-l~~~~~~~~~y  137 (162)
T d1koha1          62 ENI-PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-I-KGLKLEELWLDGNS-LSDTFRDQSTY  137 (162)
T ss_dssp             HHC-TTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHH-H-TTCCCSSCCCTTST-TSSSSSSHHHH
T ss_pred             HhC-CCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhh-h-hccccceeecCCCC-cCcCcccchhH
Confidence            345 77788888888776543  1345567788888887777654211111 2 34467777777776 33221      


Q ss_pred             --eCCCCCCCccEEE
Q 045118          146 --MGAGAMPKLESLI  158 (221)
Q Consensus       146 --~~~~~l~~L~~L~  158 (221)
                        .....+|+|+.|+
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence              1134577777665

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=2.5e-05  Score=62.91  Aligned_cols=15  Identities=13%  Similarity=0.310  Sum_probs=7.3

Q ss_pred             cCCCCCccEEEEEec
Q 045118           20 LGRLPNVRTFRISGD   34 (221)
Q Consensus        20 l~~l~~Lr~L~l~~~   34 (221)
                      +..+++|++|+++++
T Consensus        51 L~~~~~L~~LdLs~N   65 (460)
T d1z7xw1          51 LRVNPALAELNLRSN   65 (460)
T ss_dssp             HHTCTTCCEEECTTC
T ss_pred             HhcCCCCCEEECcCC
Confidence            344455555555444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=1.8e-05  Score=55.59  Aligned_cols=82  Identities=23%  Similarity=0.222  Sum_probs=41.3

Q ss_pred             ccCCCCcEEEecCCccCCc-eeeeeCCCCCCcccEEeccccccccceee-CCCCCCCccEEEecCCccccCcc-------
Q 045118           99 EKLPHLEVLKLKQNSYLER-KLACVGCSSFSQLKILHLKSMLWLEEWTM-GAGAMPKLESLILNPCAYLRKLP-------  169 (221)
Q Consensus        99 ~~l~~L~~L~l~~~~~~~~-~l~~~~~~~~~~L~~L~L~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~~~-------  169 (221)
                      ..+++|++|++++|.+..- .++.. ...+++|+.|+++++. +++++. .......|+.+++.+++-.....       
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~-~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSI-VQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTH-HHHSTTCCCCCCTTSC-CCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHH-HhhCCcccccccccCc-cccchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence            3566677777766665431 11222 2345666666666665 554432 11223456666666654322221       


Q ss_pred             hhhccCCcCcEEE
Q 045118          170 EELWCIKSLCKLE  182 (221)
Q Consensus       170 ~~~~~l~~L~~l~  182 (221)
                      ..+..+|+|+.|+
T Consensus       140 ~i~~~~P~L~~LD  152 (162)
T d1koha1         140 AIRERFPKLLRLD  152 (162)
T ss_dssp             HHHTTSTTCCEET
T ss_pred             HHHHHCCCCCEEC
Confidence            1245566666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.75  E-value=0.00017  Score=50.66  Aligned_cols=11  Identities=9%  Similarity=-0.130  Sum_probs=6.1

Q ss_pred             CCCccEEEecC
Q 045118          151 MPKLESLILNP  161 (221)
Q Consensus       151 l~~L~~L~l~~  161 (221)
                      -+.|++|++.+
T Consensus       130 n~sL~~l~l~~  140 (167)
T d1pgva_         130 NESLLRVGISF  140 (167)
T ss_dssp             CSSCCEEECCC
T ss_pred             CCCccEeeCcC
Confidence            35566666554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.07  E-value=0.0047  Score=42.85  Aligned_cols=116  Identities=11%  Similarity=0.054  Sum_probs=71.6

Q ss_pred             CCCCCccEEEEEecCC---ccccchhHhhccCCCCcEEEeeecCcee-eehhhccccCcCCCCccEEEeecccCCCCCch
Q 045118           21 GRLPNVRTFRISGDLS---YYHSGVSKSLCKLHKLECLKLVNKGKMW-QLSRMILSEYKFPPSLTQLSLSNTELMEDPMP   96 (221)
Q Consensus        21 ~~l~~Lr~L~l~~~~~---~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~   96 (221)
                      .+.+.|++|+++++..   .....+...+...++|++|+++++.-.- ....+...+... +.|++|++++|.+...+..
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n-~~L~~L~L~~n~i~~~g~~   90 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETS-PSLRVLNVESNFLTPELLA   90 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHC-SSCCEEECCSSBCCHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhc-ccccceeeehhhcchHHHH
Confidence            4568899999986431   1233455677788999999998731100 001101144555 8899999999988754332


Q ss_pred             ----hhccCCCCcEEEecCCccCCc------eeeeeCCCCCCcccEEecccc
Q 045118           97 ----TLEKLPHLEVLKLKQNSYLER------KLACVGCSSFSQLKILHLKSM  138 (221)
Q Consensus        97 ----~l~~l~~L~~L~l~~~~~~~~------~l~~~~~~~~~~L~~L~L~~~  138 (221)
                          ++..-+.|++|++++|....-      .+... +..-+.|+.|+++.+
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~-L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMA-IEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHH-HHHCSSCCEEECCCC
T ss_pred             HHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHH-HHhCCCccEeeCcCC
Confidence                455668899999987754321      01112 223567888887654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.72  E-value=0.00092  Score=46.49  Aligned_cols=69  Identities=16%  Similarity=0.025  Sum_probs=33.7

Q ss_pred             hhccCCCCcEEEeeecCce-e-eehhhccccCcCCCCccEEEeecccCCCCCch----hhccCCCCcEEEecCCcc
Q 045118           45 SLCKLHKLECLKLVNKGKM-W-QLSRMILSEYKFPPSLTQLSLSNTELMEDPMP----TLEKLPHLEVLKLKQNSY  114 (221)
Q Consensus        45 ~l~~l~~L~~L~l~~~~~~-~-~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~  114 (221)
                      ...+.++|++|++++.... . .+..+...+... ++|++|++++|.+......    .+...+.++.++++.+.+
T Consensus        12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n-~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          12 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTN-TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC-CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcC-CccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            3345577777777641000 0 111112244455 6677777777765533222    233455666666655443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.72  E-value=0.0039  Score=43.13  Aligned_cols=90  Identities=9%  Similarity=0.035  Sum_probs=56.9

Q ss_pred             cCCCCCccEEEEEecC---CccccchhHhhccCCCCcEEEeeecCcee-eehhhccccCcCCCCccEEEeecccCCCCCc
Q 045118           20 LGRLPNVRTFRISGDL---SYYHSGVSKSLCKLHKLECLKLVNKGKMW-QLSRMILSEYKFPPSLTQLSLSNTELMEDPM   95 (221)
Q Consensus        20 l~~l~~Lr~L~l~~~~---~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~   95 (221)
                      ..+.+.|++|++++..   ......+...+...++|++|+++++.-.- .+..+...+... ++++.+++++|.+.....
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~-~~l~~l~l~~~~~~~~g~   91 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN-NTLKSLNVESNFISGSGI   91 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHC-SSCCEEECCSSCCCHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhc-ccchhhhhccccccchhH
Confidence            4567899999998643   12234466777888999999998741000 111111244555 789999999988764332


Q ss_pred             ----hhhccCCCCcEEEec
Q 045118           96 ----PTLEKLPHLEVLKLK  110 (221)
Q Consensus        96 ----~~l~~l~~L~~L~l~  110 (221)
                          ..+...++|+.+++.
T Consensus        92 ~~l~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          92 LALVEALQSNTSLIELRID  110 (166)
T ss_dssp             HHHHHGGGGCSSCCEEECC
T ss_pred             HHHHHHHHhCccccEEeec
Confidence                345566778777664