Citrus Sinensis ID: 045139

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820
Protein Sequence
MVIGGGRCRSLQLLFVFILLSLCMKPAVGLSTGDEDADIKCIERERQALLMFKQGLIDEYGHLSSWGNEDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLMRAT
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccEEEccccccEEEEEccccccccccEEccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccHHccccccccEEEcccccccccccHHHHHcccccccEEEcccccccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccccccccccccccccccccEEEccccccccccHHHHccccccEEEcccccccccccHHHHHccccccccccEEEccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEEccccccEEEccHHHccccccccEEEccccEEEEEEcccccccccccEEEEEcccccccccHHccccccccEEEcccccccccccHHHHHccccccEEEccccccccccccccccccccccEEEccccccccccccccccccEEEcccccccccccHHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccEEcccccHHHHHcccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccEEEcccccccccccHHHHHHHccccccccccEEEEccccccEEEEEEEEEEcccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEcccccEEEEEEEEccccccccccccHHHHccccccEEEccccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHccccccEEEccccccccccccHHHHccccccEEEEccccccccccccHHHHHHHHcccccEEEcccccccccccHHHHHHcccccEEEcccccccccccHHHHcccHcccEEEccccccccccHHHHccccccEEEcccccccccccHHHHcccccccccccEEEcccccccccccccccccccccccccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHcccccEEEEccccccccccccccccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHHHHcccccEEEcccccccccccHHHHHHHHHccEEEccccccccccccccccccEEEcccccccccccHHHccccccEEEEEcccccccccccHHHHcccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHHcccccEEEEcccccccccccHHHHHHHHcccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHcHHHHHEEEcccccccccccHHHcccccEEEEccccccHcccccEEEEEEcccccccccccccccHHcccEEEcccccccccccHHHHHHHHccEEEcccccccccc
Coil and Loop (DISEMBL)
mvigggrcrsLQLLFVFILLSLcmkpavglstgdedadIKCIERERQALLMFKQGLIdeyghlsswgneddkkdcckwrgvscsnqtghvtmLNLQfrsymplrgnisssliglqHLNYLNMKyndfggkqipafigslknirhldlsnagftgrvpyqlgnltslqyldlsFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSqlpsltelqlrgcnlpsviasssvsfsnssrslaHLDLSLNDVSNSVYYWLFNSSSslvyldlssnklqgpipdsafpnptslsyldlsnnqlvsvPKSFRNLCRLRALyqdsnnltdlLPNLFLKLSNCSRDTLEILQLNSnmlrgslpditlfsslkelhlYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLsnlsrltyldlsHNSLilnfgsgwvpsfeLNIIRlgackqgpqfpkwlqtqnkfseldvsaaeisdtvpnwfwdlspnlyylnlshnhftgmlpdlsqkftayppeidlsansfegpippipltvTSLILFKNMFSGSLSFLCQISDEHFRyldlsdnllsgelpncsknWQKLTVLNLAnnkfsgkipdsmdfNCMMLSLhlrnnsfigelpssvksftqltvldlghnkisgiipawigdslpDLVVLSLRsnnfhgrvpvqVCHLQRIQvldlsqnnisgtvpQCLNNLtamtankssnamiryplrtdyyndhALLVWKRKDSEYRNTLGLVksidlssnrlygeipevtSLVGLISlnlsknsltgpipskiggltllnslDLSKNMLMRAT
Flexible Loop (DISEMBL)
mvigggrcrsLQLLFVFILLSLCMKPAVglstgdedadIKCIERERQALLMFKQGLIDEYGHLSSWGNEDDKKDCCKWRGVscsnqtghvTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGlvksidlssnrlYGEIPEVTSLVGLISLNLSKNSltgpipskiggltllnsldlsknmlmrat
Low Complexity Region (SEG)
MVIGGGRCRslqllfvfillslCMKPAVGLSTGDEDADIKCIERERQALLMFKQGLIDEYGHLSSWGNEDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPsviasssvsfsnssrsLAHLDLSLNDVSNSVYYWLFNsssslvyldlssNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLMRAT
Disordered region (IsUnstruct)
***GGGRCRSLQLLFVFILLSLCMKPAVGLSTGDEDADIKCIERERQALLMFKQGLIDEYGHLSSWGNEDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIA************LAHLDLSLNDVSNSVYYWLF*******************************SYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNL**************YPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSL***********
Disordered Region (DISOPRED)
************LLFVFILLSLCMKPAVGLSTGD******CIERERQALLMFKQGLIDEYGHLSSWGNEDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKS*****RYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLMRA*
Disordered Region (DISEMBL)
MVIGGGRCRSLQLLFVFILLSLCMKPAVGLSTGDEDADIKCIERERQALLMFKQGLIDEYGHLSSWGNEDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIAS*********RSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLMRAT
Disordered Region (DISPRO)
*****GRCRSLQLLFVFILLSLCMKPAVGLSTGDEDADIKCIERERQALLMFKQGLIDEYGHLSSWGNEDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVIGGGRCRSLQLLFVFILLSLCMKPAVGLSTGDEDADIKCIERERQALLMFKQGLIDEYGHLSSWGNEDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLMRAT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	820	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.797	0.772	0.304	8e-61
Q9FL28	1173	LRR receptor-like serine/	no	no	0.871	0.609	0.296	3e-51
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.768	0.503	0.298	8e-51
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.821	0.593	0.299	3e-50
Q9LP24	1120	Probable leucine-rich rep	no	no	0.792	0.580	0.292	4e-46
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.886	0.582	0.291	4e-46
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.736	0.506	0.310	1e-44
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.75	0.558	0.300	2e-44
Q9LRT1	1016	Probably inactive leucine	no	no	0.696	0.562	0.282	1e-40
Q9LHP4	1141	Receptor-like protein kin	no	no	0.619	0.445	0.319	3e-40

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  235 bits (600), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 246/807 (30%), Positives = 381/807 (47%), Gaps = 153/807 (18%)

Query: 41  CIERERQALLMFKQGL-IDEYGH-LSSW-GNEDDKKDCCKWRGVSCSNQTGHVTMLNLQF 97
           C + +R ALL F+    I+   H ++ W G  +   DCC W GV+C++++G V  L++  
Sbjct: 34  CRDDQRDALLEFRGEFPINASWHIMNQWRGPWNKSTDCCLWNGVTCNDKSGQVISLDIP- 92

Query: 98  RSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVP 157
            +++      +SSL  LQ+L                         RHLDL+N    G +P
Sbjct: 93  NTFLNNYLKTNSSLFKLQYL-------------------------RHLDLTNCNLYGEIP 127

Query: 158 YQLGNLTSLQYLDLSFN--FDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLP 215
             LGNL+ L  ++L FN     +   +  L+QL  L  +  N V  GE    L  +S+L 
Sbjct: 128 SSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHL--ILANNVLTGEIPSSLGNLSRLV 185

Query: 216 SLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDL 275
           +L EL                 FSN  R +  +  S+ D+              L  L L
Sbjct: 186 NL-EL-----------------FSN--RLVGKIPDSIGDLK------------QLRNLSL 213

Query: 276 SSNKLQGPIPDSAFPNPTSLSYLDLSNNQLV-SVPKSFRNLCRLRALYQDSNNLTDLLPN 334
           +SN L G IP S+  N ++L +L L++NQLV  VP S  NL  LR +  ++N+L+  +P 
Sbjct: 214 ASNNLIGEIP-SSLGNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPI 272

Query: 335 LFLKLSNCSRDTLEILQLNSNMLRGSLP-DITLFSSLKELHLYDNM-------------- 379
            F  L+      L I  L+SN    + P D+++F +L+   +  N               
Sbjct: 273 SFANLT-----KLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSFSGPFPKSLLLIPS 327

Query: 380 LDVLYLNNNRFTGTLT-KSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNS 438
           L+ +YL  N+FTG +   +    ++L+ L +  N L G I E+ +S L  L  LD+SHN+
Sbjct: 328 LESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPES-ISRLLNLEELDISHNN 386

Query: 439 LILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDL 498
                 +G +P               P   K +        LD+S   +   VP   W L
Sbjct: 387 F-----TGAIP---------------PTISKLVN----LLHLDLSKNNLEGEVPACLWRL 422

Query: 499 SPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMF 558
           +     + LSHN F+    + SQ+  A   E+DL++NSF+GPIP +              
Sbjct: 423 NT----MVLSHNSFSS-FENTSQE-EALIEELDLNSNSFQGPIPYM-------------- 462

Query: 559 SGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQ-KLTVLNLANNKFSGKIPDSMDF 617
                 +C++S     +LDLS+NL SG +P+C +N+   +  LNL +N FSG +PD    
Sbjct: 463 ------ICKLSS--LGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSK 514

Query: 618 NCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRS 677
              ++SL + +N   G+ P S+ +   L ++++  NKI  I P+W+ +SLP L VL+LRS
Sbjct: 515 ATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWL-ESLPSLHVLNLRS 573

Query: 678 NNFHGRVPVQVCH----LQRIQVLDLSQNNISGTVP-QCLNNLTAMTA--NKSSNAMIRY 730
           N F+G  P+   H     Q ++++D+S NN SGT+P    +N   MT    +    M  +
Sbjct: 574 NKFYG--PLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTEF 631

Query: 731 PLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPE-VTSLVGLISLNLSK 789
               D Y     +V K  D  +       ++ID S N++ G IPE +  L  L  LNLS 
Sbjct: 632 WRYADSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSG 691

Query: 790 NSLTGPIPSKIGGLTLLNSLDLSKNML 816
           N+ T  IP  +  LT L +LD+S+N L
Sbjct: 692 NAFTSVIPRFLANLTKLETLDISRNKL 718

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  204 bits (518), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 236/796 (29%), Positives = 386/796 (48%), Gaps = 81/796 (10%)

Query: 40  KCIERERQALLMFKQGLI-DEYGHLSSWGNEDDKKDCCKWRGVSCSNQTGHVTMLNLQFR 98
           +  E E +AL  FK G+  D  G LS W      + C  W G++C + TGHV  ++L  +
Sbjct: 25  QSFEPEIEALKSFKNGISNDPLGVLSDWTIIGSLRHC-NWTGITC-DSTGHVVSVSLLEK 82

Query: 99  SYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPY 158
               L G +S ++  L +L  L++  N F GK IPA IG L  +  L L    F+G +P 
Sbjct: 83  Q---LEGVLSPAIANLTYLQVLDLTSNSFTGK-IPAEIGKLTELNQLILYLNYFSGSIPS 138

Query: 159 QLGNLTSLQYLDLSFNFDMLSKKL-EWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSL 217
            +  L ++ YLDL  N  +LS  + E + + S L  +  +  NL       ++   L  L
Sbjct: 139 GIWELKNIFYLDLRNN--LLSGDVPEEICKTSSLVLIGFDYNNLTG-----KIPECLGDL 191

Query: 218 TELQL---RGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLD 274
             LQ+    G +L   I  S  + +N    L  LDLS N ++  +    F +  +L  L 
Sbjct: 192 VHLQMFVAAGNHLTGSIPVSIGTLAN----LTDLDLSGNQLTGKIPRD-FGNLLNLQSLV 246

Query: 275 LSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVS-VPKSFRNLCRLRALYQDSNNLTDLLP 333
           L+ N L+G IP +   N +SL  L+L +NQL   +P    NL +L+AL    N LT  +P
Sbjct: 247 LTENLLEGDIP-AEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIP 305

Query: 334 NLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGT 393
           +   +L+  +      L L+ N L G + +        E+   ++ L+VL L++N FTG 
Sbjct: 306 SSLFRLTQLTH-----LGLSENHLVGPISE--------EIGFLES-LEVLTLHSNNFTGE 351

Query: 394 LTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPS--- 450
             +SI  L  L +L V  N++ G +  A L  L+ L  L  +H++L+    +G +PS   
Sbjct: 352 FPQSITNLRNLTVLTVGFNNISGELP-ADLGLLTNLRNLS-AHDNLL----TGPIPSSIS 405

Query: 451 --FELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLS 508
               L ++ L   +   + P+     N  + + +     +  +P+  ++ S NL  L+++
Sbjct: 406 NCTGLKLLDLSHNQMTGEIPRGFGRMN-LTFISIGRNHFTGEIPDDIFNCS-NLETLSVA 463

Query: 509 HNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQI 568
            N+ TG L  L  K       + +S NS  GPIP     + +L     ++  S  F  +I
Sbjct: 464 DNNLTGTLKPLIGKLQKLRI-LQVSYNSLTGPIPR---EIGNLKDLNILYLHSNGFTGRI 519

Query: 569 SDEH-----FRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLS 623
             E       + L +  N L G +P    + + L+VL+L+NNKFSG+IP        +  
Sbjct: 520 PREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTY 579

Query: 624 LHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDL-VVLSLRSNNFHG 682
           L L+ N F G +P+S+KS + L   D+  N ++G IP  +  SL ++ + L+  +N   G
Sbjct: 580 LSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTG 639

Query: 683 RVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLT-AMTANKSSNAMIRYPLRTDYYNDHA 741
            +P ++  L+ +Q +DLS N  SG++P+ L       T + S N +      + +  D  
Sbjct: 640 TIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNL------SGHIPDE- 692

Query: 742 LLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPE-VTSLVGLISLNLSKNSLTGPIPSKI 800
             V++  D        ++ S++LS N   GEIP+   ++  L+SL+LS N+LTG IP  +
Sbjct: 693 --VFQGMD--------MIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESL 742

Query: 801 GGLTLLNSLDLSKNML 816
             L+ L  L L+ N L
Sbjct: 743 ANLSTLKHLKLASNNL 758

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  202 bits (514), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 227/760 (29%), Positives = 343/760 (45%), Gaps = 130/760 (17%)

Query: 103 LRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGN 162
           L G+I S L  L +L  L +  N+  G  IP   G+L N++ L L++   TG +P + G 
Sbjct: 132 LSGDIPSQLGSLVNLKSLKLGDNELNGT-IPETFGNLVNLQMLALASCRLTGLIPSRFGR 190

Query: 163 LTSLQYLDLSFN----------------------FDMLSKKLEWLSQLSFLEYVRLNQVN 200
           L  LQ L L  N                      F+ L+  L   ++L+ L+   L  +N
Sbjct: 191 LVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLP--AELNRLK--NLQTLN 246

Query: 201 LGEATDWLQVVSQLPSLTELQ---LRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSN 257
           LG+ +   ++ SQL  L  +Q   L G  L  +I       +N    L  LDLS N+++ 
Sbjct: 247 LGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELAN----LQTLDLSSNNLTG 302

Query: 258 SVY--YWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVS-VPKSFRN 314
            ++  +W  N    L +L L+ N+L G +P +   N TSL  L LS  QL   +P    N
Sbjct: 303 VIHEEFWRMNQ---LEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISN 359

Query: 315 LCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPD-ITLFSSLKEL 373
              L+ L   +N LT  +P+   +L   +      L LN+N L G+L   I+  ++L+E 
Sbjct: 360 CQSLKLLDLSNNTLTGQIPDSLFQLVELTN-----LYLNNNSLEGTLSSSISNLTNLQEF 414

Query: 374 HLYDN--------------MLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMIT 419
            LY N               L+++YL  NRF+G +   IG  ++L+ +D   N L G I 
Sbjct: 415 TLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIP 474

Query: 420 EAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSE 479
            + +  L  LT L L  N L+     G +P+       LG C Q              + 
Sbjct: 475 SS-IGRLKDLTRLHLRENELV-----GNIPA------SLGNCHQ-------------MTV 509

Query: 480 LDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEG 539
           +D++  ++S ++P+ F  L+  L    + +N   G LPD S         I+ S+N F G
Sbjct: 510 IDLADNQLSGSIPSSFGFLTA-LELFMIYNNSLQGNLPD-SLINLKNLTRINFSSNKFNG 567

Query: 540 PIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTV 599
            I P+               GS S+L           D+++N   G++P        L  
Sbjct: 568 SISPL--------------CGSSSYLS---------FDVTENGFEGDIPLELGKSTNLDR 604

Query: 600 LNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGII 659
           L L  N+F+G+IP +      +  L +  NS  G +P  +    +LT +DL +N +SG+I
Sbjct: 605 LRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVI 664

Query: 660 PAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMT 719
           P W+G  LP L  L L SN F G +P ++  L  I  L L  N+++G++PQ + NL A+ 
Sbjct: 665 PTWLG-KLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALN 723

Query: 720 ANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTS 778
           A       +  PL +                     L  +  + LS N L GEIP E+  
Sbjct: 724 ALNLEENQLSGPLPSTI-----------------GKLSKLFELRLSRNALTGEIPVEIGQ 766

Query: 779 LVGLIS-LNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLM 817
           L  L S L+LS N+ TG IPS I  L  L SLDLS N L+
Sbjct: 767 LQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLV 806

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  200 bits (509), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 248/827 (29%), Positives = 355/827 (42%), Gaps = 153/827 (18%)

Query: 11  LQLLFVFILLSLCMKPAVGLSTGDEDADIKCIERERQALLMFKQGLIDEYGHLSSWGNED 70
           + L F+F+++     P V  S  DE       + E  AL  FK  L D  G L+SW +  
Sbjct: 5   ISLFFIFLVI---YAPLV--SYADES------QAEIDALTAFKLNLHDPLGALTSW-DPS 52

Query: 71  DKKDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGK 130
                C WRGV C+N    VT + L     + L G IS  + GL+ L  L+++ N F G 
Sbjct: 53  TPAAPCDWRGVGCTNH--RVTEIRL---PRLQLSGRISDRISGLRMLRKLSLRSNSFNGT 107

Query: 131 QIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSF 190
            IP  +     +  + L     +G++P  + NLTSL+  +++ N       +   S L F
Sbjct: 108 -IPTSLAYCTRLLSVFLQYNSLSGKLPPAMRNLTSLEVFNVAGNRLSGEIPVGLPSSLQF 166

Query: 191 LEY---VRLNQVNLGEAT---------DWLQVVSQLP-SLTELQ-----------LRGCN 226
           L+        Q+  G A           + Q+  ++P SL  LQ           L+G  
Sbjct: 167 LDISSNTFSGQIPSGLANLTQLQLLNLSYNQLTGEIPASLGNLQSLQYLWLDFNLLQGT- 225

Query: 227 LPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPD 286
           LPS I++ S        SL HL  S N++   V    + +   L  L LS+N   G +P 
Sbjct: 226 LPSAISNCS--------SLVHLSASENEIG-GVIPAAYGALPKLEVLSLSNNNFSGTVPF 276

Query: 287 SAFPNPTSLSYLDLSNNQLVSV--PKSFRNLCR--LRALYQDSNNLTDLLPNLFLKLSNC 342
           S F N TSL+ + L  N    +  P++  N CR  L+ L    N ++   P   L L+N 
Sbjct: 277 SLFCN-TSLTIVQLGFNAFSDIVRPETTAN-CRTGLQVLDLQENRISGRFP---LWLTNI 331

Query: 343 SRDTLEILQLNSNMLRGSLP-DITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQL 401
              +L+ L ++ N+  G +P DI     L+EL L           NN  TG +   I Q 
Sbjct: 332 L--SLKNLDVSGNLFSGEIPPDIGNLKRLEELKLA----------NNSLTGEIPVEIKQC 379

Query: 402 SQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNI-----I 456
             L++LD   NSLKG I E  L  +  L  L L  NS      SG+VPS  +N+     +
Sbjct: 380 GSLDVLDFEGNSLKGQIPE-FLGYMKALKVLSLGRNSF-----SGYVPSSMVNLQQLERL 433

Query: 457 RLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGML 516
            LG       FP  L      SELD+S    S  VP    +LS NL +LNLS        
Sbjct: 434 NLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISNLS-NLSFLNLS-------- 484

Query: 517 PDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYL 576
                             N F G IP             N+F                 L
Sbjct: 485 -----------------GNGFSGEIPAS---------VGNLF-------------KLTAL 505

Query: 577 DLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELP 636
           DLS   +SGE+P        + V+ L  N FSG +P+       +  ++L +NSF GE+P
Sbjct: 506 DLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIP 565

Query: 637 SSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQV 696
            +      L  L L  N ISG IP  IG+    L VL LRSN   G +P  +  L R++V
Sbjct: 566 QTFGFLRLLVSLSLSDNHISGSIPPEIGNC-SALEVLELRSNRLMGHIPADLSRLPRLKV 624

Query: 697 LDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTL 756
           LDL QNN+SG +P  ++  +++ +                 ++H   V     S   N  
Sbjct: 625 LDLGQNNLSGEIPPEISQSSSLNSLSLD-------------HNHLSGVIPGSFSGLSN-- 669

Query: 757 GLVKSIDLSSNRLYGEIPEVTSLVG--LISLNLSKNSLTGPIPSKIG 801
             +  +DLS N L GEIP   +L+   L+  N+S N+L G IP+ +G
Sbjct: 670 --LTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASLG 714

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  187 bits (474), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 242/827 (29%), Positives = 362/827 (43%), Gaps = 177/827 (21%)

Query: 45  ERQALLMFKQGLIDEYGHLSSW---GNEDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSYM 101
           E  ALL +K    +    LSSW    N +    C  W GVSC N  G +  LNL      
Sbjct: 33  EANALLKWKSTFTNS-SKLSSWVHDANTNTSFSCTSWYGVSC-NSRGSIEELNLT----- 85

Query: 102 PLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLG 161
                 ++ + G          + DF       FI SL N+ ++DLS    +G +P Q G
Sbjct: 86  ------NTGIEG---------TFQDF------PFI-SLSNLAYVDLSMNLLSGTIPPQFG 123

Query: 162 NLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQ 221
           NL+ L Y DLS N             L+            GE +  L     L +LT L 
Sbjct: 124 NLSKLIYFDLSTN------------HLT------------GEISPSL---GNLKNLTVLY 156

Query: 222 LRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQ 281
           L    L SVI S   +      S+  L LS N ++ S+   L N   +L+ L L  N L 
Sbjct: 157 LHQNYLTSVIPSELGNM----ESMTDLALSQNKLTGSIPSSLGN-LKNLMVLYLYENYLT 211

Query: 282 GPIPDSAFPNPTSLSYLDLSNNQLV-SVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLS 340
           G IP     N  S++ L LS N+L  S+P +  NL  L  LY   N LT ++P    ++ 
Sbjct: 212 GVIP-PELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPP---EIG 267

Query: 341 NCSRDTLEILQLNSNMLRGSLP-------DITLFSSLK---------ELHLYDNMLDVLY 384
           N   +++  L L+ N L GS+P       ++TL S  +         +L   ++M+D L 
Sbjct: 268 NM--ESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMID-LE 324

Query: 385 LNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFG 444
           L+NN+ TG++  S+G L  L +L +  N L G+I    L N+  +  L L++N L     
Sbjct: 325 LSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVI-PPELGNMESMIDLQLNNNKL----- 378

Query: 445 SGWVPSFELNIIRLGACKQGPQ-----FPKWLQTQNKFSELDVSAAEISDTVPNWFWDLS 499
           +G +PS   N+  L              P+ L        LD+S  +++ +VP+ F + +
Sbjct: 379 TGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFT 438

Query: 500 PNLYYLNLSHNHFTGMLPDL-------------SQKFTAYPPE----------IDLSANS 536
             L  L L  NH +G +P               +  FT + PE          I L  N 
Sbjct: 439 -KLESLYLRVNHLSGAIPPGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNH 497

Query: 537 FEGPIPPIPLTVTSLI---LFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKN 593
            EGPIP       SLI      N F+G +     I  +   ++D S N   GE+   S N
Sbjct: 498 LEGPIPKSLRDCKSLIRARFLGNKFTGDIFEAFGIYPD-LNFIDFSHNKFHGEI---SSN 553

Query: 594 WQ---KLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDL 650
           W+   KL  L ++NN  +G IP  +     ++ L L  N+  GELP ++ + T L+ L L
Sbjct: 554 WEKSPKLGALIMSNNNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRL 613

Query: 651 GHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQ 710
             N++SG +PA +   L +L  L L SNNF   +P       ++  ++LS+N   G++P+
Sbjct: 614 NGNQLSGRVPAGL-SFLTNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIPR 672

Query: 711 CLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLY 770
            L+ LT +T                                          +DLS N+L 
Sbjct: 673 -LSKLTQLT-----------------------------------------QLDLSHNQLD 690

Query: 771 GEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
           GEIP +++SL  L  L+LS N+L+G IP+   G+  L ++D+S N L
Sbjct: 691 GEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKL 737

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  186 bits (473), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 242/830 (29%), Positives = 383/830 (46%), Gaps = 103/830 (12%)

Query: 42  IERERQALLMFKQGLI---DEYGHLSSWGNEDDKKDCCKWRGVSCSNQTG--HVTMLNLQ 96
           I  + Q LL  K+ L+    E   L  W +  D  + C W GV+C N TG   V  LNL 
Sbjct: 23  INNDLQTLLEVKKSLVTNPQEDDPLRQWNS--DNINYCSWTGVTCDN-TGLFRVIALNL- 78

Query: 97  FRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRV 156
             + + L G+IS       +L +L++  N+  G  IP  + +L ++  L L +   TG +
Sbjct: 79  --TGLGLTGSISPWFGRFDNLIHLDLSSNNLVGP-IPTALSNLTSLESLFLFSNQLTGEI 135

Query: 157 PYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPS 216
           P QLG+L +++ L +  N +++    E L  L  L+ + L    L        + SQL  
Sbjct: 136 PSQLGSLVNIRSLRIGDN-ELVGDIPETLGNLVNLQMLALASCRLTGP-----IPSQLGR 189

Query: 217 LTELQ----------------LRGCNLPSVIASSSVSFSNSS-------RSLAHLDLSLN 253
           L  +Q                L  C+  +V  ++    + +         +L  L+L+ N
Sbjct: 190 LVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANN 249

Query: 254 DVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLV-SVPKSF 312
            ++  +   L    S L YL L +N+LQG IP S   +  +L  LDLS N L   +P+ F
Sbjct: 250 SLTGEIPSQL-GEMSQLQYLSLMANQLQGLIPKS-LADLGNLQTLDLSANNLTGEIPEEF 307

Query: 313 RNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDT-LEILQLNSNMLRGSLP-DITLFSSL 370
            N+ +L  L   +N+L+  LP      S CS +T LE L L+   L G +P +++   SL
Sbjct: 308 WNMSQLLDLVLANNHLSGSLPK-----SICSNNTNLEQLVLSGTQLSGEIPVELSKCQSL 362

Query: 371 KELHLYDN--------------MLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKG 416
           K+L L +N               L  LYL+NN   GTL+ SI  L+ L+ L +  N+L+G
Sbjct: 363 KQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEG 422

Query: 417 MITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPS-----FELNIIRLGACKQGPQFPKWL 471
            + +  +S L +L  L L  N       SG +P        L +I +       + P  +
Sbjct: 423 KLPK-EISALRKLEVLFLYENRF-----SGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSI 476

Query: 472 QTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEID 531
               + + L +   E+   +P    +    L  L+L+ N  +G +P  S  F     ++ 
Sbjct: 477 GRLKELNLLHLRQNELVGGLPASLGNCH-QLNILDLADNQLSGSIPS-SFGFLKGLEQLM 534

Query: 532 LSANSFEGPIPPIPLTVTSLI---LFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELP 588
           L  NS +G +P   +++ +L    L  N  +G++  LC  S   +   D+++N    E+P
Sbjct: 535 LYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSS--YLSFDVTNNGFEDEIP 592

Query: 589 NCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVL 648
               N Q L  L L  N+ +GKIP ++     +  L + +N+  G +P  +    +LT +
Sbjct: 593 LELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHI 652

Query: 649 DLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTV 708
           DL +N +SG IP W+G  L  L  L L SN F   +P ++ +  ++ VL L  N+++G++
Sbjct: 653 DLNNNFLSGPIPPWLG-KLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSI 711

Query: 709 PQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNR 768
           PQ + NL A+             L  D       L       +    L  +  + LS N 
Sbjct: 712 PQEIGNLGALNV-----------LNLDKNQFSGSL------PQAMGKLSKLYELRLSRNS 754

Query: 769 LYGEIP-EVTSLVGLIS-LNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
           L GEIP E+  L  L S L+LS N+ TG IPS IG L+ L +LDLS N L
Sbjct: 755 LTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQL 804

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  182 bits (461), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 222/715 (31%), Positives = 319/715 (44%), Gaps = 111/715 (15%)

Query: 131 QIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFN-FDMLSKKLEWLSQLS 189
           QIP  I SLKN+R L L+   F+G++P ++ NL  LQ LDLS N    L  +L  LS+L 
Sbjct: 80  QIPKEISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSGNSLTGLLPRL--LSELP 137

Query: 190 FLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLD 249
            L Y+ L+  +   +      +S LP+L+ L +   +L   I       SN    L++L 
Sbjct: 138 QLLYLDLSDNHFSGSLPPSFFIS-LPALSSLDVSNNSLSGEIPPEIGKLSN----LSNLY 192

Query: 250 LSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQL-VSV 308
           + LN  S  +   + N  S L      S    GP+P         L+ LDLS N L  S+
Sbjct: 193 MGLNSFSGQIPSEIGN-ISLLKNFAAPSCFFNGPLPKE-ISKLKHLAKLDLSYNPLKCSI 250

Query: 309 PKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLP----DI 364
           PKSF  L  L  L   S  L  L+P    +L NC   +L+ L L+ N L G LP    +I
Sbjct: 251 PKSFGELHNLSILNLVSAELIGLIPP---ELGNCK--SLKSLMLSFNSLSGPLPLELSEI 305

Query: 365 TLFSSLKELHLYDN----------MLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSL 414
            L +   E +              +LD L L NNRF+G +   I     L+ L +ASN L
Sbjct: 306 PLLTFSAERNQLSGSLPSWMGKWKVLDSLLLANNRFSGEIPHEIEDCPMLKHLSLASNLL 365

Query: 415 KGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQ 474
            G I    L     L  +DLS N L     SG +            C             
Sbjct: 366 SGSIPR-ELCGSGSLEAIDLSGNLL-----SGTIEEV------FDGC------------- 400

Query: 475 NKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSA 534
           +   EL ++  +I+ ++P   W L   L  L+L  N+FTG +P    K T    E   S 
Sbjct: 401 SSLGELLLTNNQINGSIPEDLWKLP--LMALDLDSNNFTGEIPKSLWKSTNL-MEFTASY 457

Query: 535 NSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNW 594
           N  EG +P       SL                      + L LSDN L+GE+P      
Sbjct: 458 NRLEGYLPAEIGNAASL----------------------KRLVLSDNQLTGEIPREIGKL 495

Query: 595 QKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNK 654
             L+VLNL  N F GKIP  +     + +L L +N+  G++P  + +  QL  L L +N 
Sbjct: 496 TSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNN 555

Query: 655 ISGIIPA-----WIGDSLPDLV------VLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNN 703
           +SG IP+     +    +PDL       +  L  N   G +P ++     +  + LS N+
Sbjct: 556 LSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNNH 615

Query: 704 ISGTVPQCLNNLTAMTA-NKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSI 762
           +SG +P  L+ LT +T  + S NA+                       E  N+L L + +
Sbjct: 616 LSGEIPASLSRLTNLTILDLSGNALT-----------------GSIPKEMGNSLKL-QGL 657

Query: 763 DLSSNRLYGEIPEVTSLVG-LISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
           +L++N+L G IPE   L+G L+ LNL+KN L GP+P+ +G L  L  +DLS N L
Sbjct: 658 NLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNL 712

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  181 bits (460), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 212/706 (30%), Positives = 318/706 (45%), Gaps = 91/706 (12%)

Query: 45  ERQALLMFKQGLIDEYGHLSSWGNEDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLR 104
           E Q LL  K   +D   +L +W + D     C W GV CSN +    +L+L   S M L 
Sbjct: 30  EGQYLLEIKSKFVDAKQNLRNWNSNDSVP--CGWTGVMCSNYSSDPEVLSLNLSS-MVLS 86

Query: 105 GNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLT 164
           G +S S+ GL HL  L++ YN   GK IP  IG+  ++  L L+N  F G +P ++G L 
Sbjct: 87  GKLSPSIGGLVHLKQLDLSYNGLSGK-IPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLV 145

Query: 165 SLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRG 224
           SL+ L +  N    S  +E  + LS  + V  +    G+    +  + +L S    Q   
Sbjct: 146 SLENLIIYNNRISGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQ--- 202

Query: 225 CNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPI 284
               ++I+ S  S      SL  L L+ N +S  +   +      L  + L  N+  G I
Sbjct: 203 ----NMISGSLPSEIGGCESLVMLGLAQNQLSGELPKEI-GMLKKLSQVILWENEFSGFI 257

Query: 285 PDSAFPNPTSLSYLDLSNNQLVS-VPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCS 343
           P     N TSL  L L  NQLV  +PK   +L  L  LY   N L   +P     LS   
Sbjct: 258 PRE-ISNCTSLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYA- 315

Query: 344 RDTLEILQLNSNMLRGSLPDITLFSSLKELHLYD-NMLDVLYLNNNRFTGTLTKSIGQLS 402
              +EI   + N L G +P          L L +   L++LYL  N+ TGT+   +  L 
Sbjct: 316 ---IEI-DFSENALTGEIP----------LELGNIEGLELLYLFENQLTGTIPVELSTLK 361

Query: 403 QLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACK 462
            L  LD++ N+L G I       L  L  L L  NSL     SG +P            K
Sbjct: 362 NLSKLDLSINALTGPIPLG-FQYLRGLFMLQLFQNSL-----SGTIPP-----------K 404

Query: 463 QGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQK 522
            G     W+        LD+S   +S  +P++   L  N+  LNL  N+ +G +P     
Sbjct: 405 LGWYSDLWV--------LDMSDNHLSGRIPSYLC-LHSNMIILNLGTNNLSGNIPTGITT 455

Query: 523 FTAYPPEIDLSANSFEGPIPP---IPLTVTSLILFKNMFSGSLSFLCQISD-EHFRYLDL 578
                 ++ L+ N+  G  P      + VT++ L +N F GS+    ++ +    + L L
Sbjct: 456 CKTLV-QLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPR--EVGNCSALQRLQL 512

Query: 579 SDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLS-LHLRNNSFIGELPS 637
           +DN  +GELP       +L  LN+++NK +G++P  + FNC ML  L +  N+F G LPS
Sbjct: 513 ADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEI-FNCKMLQRLDMCCNNFSGTLPS 571

Query: 638 SVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQV- 696
            V S  QL +L L +N +SG IP  +G+ L  L  L +  N F+G +P ++  L  +Q+ 
Sbjct: 572 EVGSLYQLELLKLSNNNLSGTIPVALGN-LSRLTELQMGGNLFNGSIPRELGSLTGLQIA 630

Query: 697 LDLSQNNI------------------------SGTVPQCLNNLTAM 718
           L+LS N +                        SG +P    NL+++
Sbjct: 631 LNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSL 676

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score =  169 bits (427), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 200/708 (28%), Positives = 301/708 (42%), Gaps = 137/708 (19%)

Query: 6   GRCRSLQLLFVFILLSLCMKPAVGLSTGDEDADIKCIERERQALLMFKQGLIDEYGHLSS 65
           G+ R   + F   L    M   +     + D D   +  +   L++FK  L D + HL S
Sbjct: 2   GKQRRTMISFTLFLTLTMMSSLI-----NGDTDSIQLNDDVLGLIVFKSDLNDPFSHLES 56

Query: 66  WGNEDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYN 125
           W  +D+    C W  V C+ +T  V  L+L     + L G I+  +  LQ L  L+    
Sbjct: 57  WTEDDNTP--CSWSYVKCNPKTSRVIELSLD---GLALTGKINRGIQKLQRLKVLS---- 107

Query: 126 DFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWL 185
                                LSN  FTG +   L N   LQ LDLS N           
Sbjct: 108 ---------------------LSNNNFTGNI-NALSNNNHLQKLDLSHN----------- 134

Query: 186 SQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSL 245
                         NL       Q+ S L S+T LQ                        
Sbjct: 135 --------------NLSG-----QIPSSLGSITSLQ------------------------ 151

Query: 246 AHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQL 305
            HLDL+ N  S ++   LFN+ SSL YL LS N L+G IP + F   + L+ L+LS N+ 
Sbjct: 152 -HLDLTGNSFSGTLSDDLFNNCSSLRYLSLSHNHLEGQIPSTLF-RCSVLNSLNLSRNRF 209

Query: 306 VSVP---KSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLP 362
              P        L RLRAL   SN+L+  +P   L L N     L+ LQL  N   G+LP
Sbjct: 210 SGNPSFVSGIWRLERLRALDLSSNSLSGSIPLGILSLHN-----LKELQLQRNQFSGALP 264

Query: 363 -DITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEA 421
            DI L   L       N +D   L++N F+G L +++ +L  L   DV++N L G     
Sbjct: 265 SDIGLCPHL-------NRVD---LSSNHFSGELPRTLQKLKSLNHFDVSNNLLSGDFP-P 313

Query: 422 HLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELD 481
            + +++ L +LD S N L     S       L  + L   K   + P+ L++  +   + 
Sbjct: 314 WIGDMTGLVHLDFSSNELTGKLPSSISNLRSLKDLNLSENKLSGEVPESLESCKELMIVQ 373

Query: 482 VSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPI 541
           +   + S  +P+ F+DL   L  ++ S N  TG +P  S +       +DLS NS  G I
Sbjct: 374 LKGNDFSGNIPDGFFDLG--LQEMDFSGNGLTGSIPRGSSRLFESLIRLDLSHNSLTGSI 431

Query: 542 PPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLN 601
           P                 G +         H RYL+LS N  +  +P   +  Q LTVL+
Sbjct: 432 P-----------------GEVGLFI-----HMRYLNLSWNHFNTRVPPEIEFLQNLTVLD 469

Query: 602 LANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPA 661
           L N+   G +P  +  +  +  L L  NS  G +P  + + + L +L L HN ++G IP 
Sbjct: 470 LRNSALIGSVPADICESQSLQILQLDGNSLTGSIPEGIGNCSSLKLLSLSHNNLTGPIPK 529

Query: 662 WIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVP 709
            + + L +L +L L +N   G +P ++  LQ + ++++S N + G +P
Sbjct: 530 SLSN-LQELKILKLEANKLSGEIPKELGDLQNLLLVNVSFNRLIGRLP 576

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  167 bits (423), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 186/582 (31%), Positives = 270/582 (46%), Gaps = 74/582 (12%)

Query: 269 SLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVS-VPKSFRNLCRLRALYQDSNN 327
           SL  L +S   L G +P+S   +   L  LDLS+N LV  +P S   L  L  L  +SN 
Sbjct: 106 SLQKLTISGANLTGTLPES-LGDCLGLKVLDLSSNGLVGDIPWSLSKLRNLETLILNSNQ 164

Query: 328 LTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLP-DITLFSSLKELHLYDNM------- 379
           LT  +P     +S CS+  L+ L L  N+L GS+P ++   S L+ + +  N        
Sbjct: 165 LTGKIPP---DISKCSK--LKSLILFDNLLTGSIPTELGKLSGLEVIRIGGNKEISGQIP 219

Query: 380 --------LDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTY 431
                   L VL L     +G L  S+G+L +LE L + +  + G I  + L N S L  
Sbjct: 220 SEIGDCSNLTVLGLAETSVSGNLPSSLGKLKKLETLSIYTTMISGEIP-SDLGNCSELVD 278

Query: 432 LDLSHNSLILNFGSGWVPSFELNIIRLGACKQ--------GPQFPKWLQTQNKFSELDVS 483
           L L  NSL     SG +P     I +L   +Q            P+ +   +    +D+S
Sbjct: 279 LFLYENSL-----SGSIPR---EIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLS 330

Query: 484 AAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPP 543
              +S ++P+    LS  L    +S N F+G +P      ++   ++ L  N   G IP 
Sbjct: 331 LNLLSGSIPSSIGRLS-FLEEFMISDNKFSGSIPTTISNCSSLV-QLQLDKNQISGLIPS 388

Query: 544 IPLTVTSLILF---KNMFSGSLS-FLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTV 599
              T+T L LF    N   GS+   L   +D   + LDLS N L+G +P+     + LT 
Sbjct: 389 ELGTLTKLTLFFAWSNQLEGSIPPGLADCTD--LQALDLSRNSLTGTIPSGLFMLRNLTK 446

Query: 600 LNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGII 659
           L L +N  SG IP  +     ++ L L  N   GE+PS + S  ++  LD   N++ G +
Sbjct: 447 LLLISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKV 506

Query: 660 PAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMT 719
           P  IG S  +L ++ L +N+  G +P  V  L  +QVLD+S N  SG +P  L  L ++ 
Sbjct: 507 PDEIG-SCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRLVSLN 565

Query: 720 ANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSI---DLSSNRLYGEIP-E 775
               S  +    + T                    +LG+   +   DL SN L GEIP E
Sbjct: 566 KLILSKNLFSGSIPT--------------------SLGMCSGLQLLDLGSNELSGEIPSE 605

Query: 776 VTSLVGL-ISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
           +  +  L I+LNLS N LTG IPSKI  L  L+ LDLS NML
Sbjct: 606 LGDIENLEIALNLSSNRLTGKIPSKIASLNKLSILDLSHNML 647

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	820
225464712	1021	PREDICTED: receptor-like protein 12-like	0.951	0.763	0.486	0.0
359490572	975	PREDICTED: probable LRR receptor-like se	0.967	0.813	0.501	0.0
224105895	963	predicted protein [Populus trichocarpa]	0.964	0.821	0.490	0.0
147807651	971	hypothetical protein VITISV_018647 [Viti	0.924	0.780	0.475	0.0
359490576	972	PREDICTED: LRR receptor-like serine/thre	0.904	0.763	0.485	0.0
224105891	1036	predicted protein [Populus trichocarpa]	0.948	0.750	0.484	0.0
225462661	1485	PREDICTED: LRR receptor-like serine/thre	0.912	0.503	0.477	0.0
224116866	994	predicted protein [Populus trichocarpa]	0.929	0.766	0.478	0.0
225466147	1024	PREDICTED: LRR receptor-like serine/thre	0.943	0.755	0.452	0.0
255560149	1010	serine-threonine protein kinase, plant-t	0.975	0.792	0.450	0.0

>gi|225464712|ref|XP_002276171.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/893 (48%), Positives = 558/893 (62%), Gaps = 113/893 (12%)

Query: 10  SLQLLFVFILLSLCMKPAVGLSTGDEDADIKCIERERQALLMFKQGLIDEYGHLSSWGNE 69
           S Q    F LL LC KP  GL +G       C+E+ERQALL FKQGL+D++G LSSWGNE
Sbjct: 30  SFQHFISFTLLLLCSKP--GLGSG-------CVEKERQALLDFKQGLVDDFGILSSWGNE 80

Query: 70  DDKKDCCKWRGVSCSNQTGHVTMLNLQ------FRSYMPLRGNISSSLIGLQHLNYLNMK 123
           +D++DCCKWRGV CSN+T HV ML+L          Y  LRG ISSSL+ LQHLN+L++ 
Sbjct: 81  EDRRDCCKWRGVQCSNRTSHVIMLDLHALPTDTVHKYQSLRGRISSSLLELQHLNHLDLS 140

Query: 124 YNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLE 183
            NDF G  +P FIG    +R+L+LS A   G +P  LGNL++L +LDLS N+ M S+ LE
Sbjct: 141 LNDFQGSYVPEFIGLFSKLRYLNLSEARLAGMIPSHLGNLSNLHFLDLSRNYGMSSETLE 200

Query: 184 WLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSR 243
           WLS+LS L ++ L+ +NL +A  W  V+++LPSLT+L L    LP +I  S++S++NSS+
Sbjct: 201 WLSRLSSLRHLDLSGLNLDKAIYWEHVINRLPSLTDLLLHDSALPQIITPSALSYTNSSK 260

Query: 244 SLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDS---------------- 287
           SL  LDLS N +S+SVY WLFN SSSLV+LDLS N++QG IPD+                
Sbjct: 261 SLVVLDLSWNFLSSSVYPWLFNLSSSLVHLDLSINQIQGLIPDTFGEMVSLEYLDLFFNQ 320

Query: 288 ------------------------------AFPNPTSLSYLDLSNNQLVS-VPKSFRNLC 316
                                          F + TSLSYLDLS NQL   +PKSF+NLC
Sbjct: 321 LEGEIPQSLTSTSLVHLDLSVNHLHGSIPDTFGHMTSLSYLDLSLNQLEGGIPKSFKNLC 380

Query: 317 RLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLY 376
            L+ +   SN+LT  LP       +CS+DTLE+L L+ N   GS P+ T FS L  L   
Sbjct: 381 SLQMVMLLSNSLTAQLPEFVQNSLSCSKDTLEVLVLSWNQFTGSFPNFTGFSVLGHL--- 437

Query: 377 DNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSH 436
                  Y+++NR  GT  + IGQLSQLE+L+++ NSL G ITEAHLS+LS+L +LDLS 
Sbjct: 438 -------YIDHNRLNGTFPEHIGQLSQLEVLEISGNSLHGNITEAHLSSLSKLYWLDLSS 490

Query: 437 NSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFW 496
           NSL L     W P F++  + L +CK GP FP WLQTQ     LD+S + ISD +P+WFW
Sbjct: 491 NSLALELSPEWTPPFQVGYLGLLSCKMGPNFPGWLQTQKDLFSLDISNSSISDVIPSWFW 550

Query: 497 DLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKN 556
           +L+  L  L +++N   G +P L  +  A    IDLS N FEGPIP +P  V  L L KN
Sbjct: 551 NLTSKLIKLRIANNQIRGRVPSLRMETAAV---IDLSLNRFEGPIPSLPSGVRVLSLSKN 607

Query: 557 MFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQ-KLTVLNLANNKFSGKIPDSM 615
           +FSGS+S LC I D    YLDLSDNLLSG LP+C + W+ +L +LNLANN FSGK+P S+
Sbjct: 608 LFSGSISLLCTIVDGALSYLDLSDNLLSGALPDCWQQWRDQLQILNLANNNFSGKLPYSL 667

Query: 616 DFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSL 675
                + +LHL NN F+GELPSS+ + T+L ++D+G N+ SG IP WIG+ L DLVVLSL
Sbjct: 668 GSLAALQTLHLYNNGFLGELPSSLMNCTKLRLVDMGKNRFSGEIPTWIGERLSDLVVLSL 727

Query: 676 RSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTD 735
           RSN FHG +   +C L+ +Q+LD S+NNISGT+P+CLNN TAM     +  MI   +  D
Sbjct: 728 RSNEFHGSISSDICLLKELQILDFSRNNISGTIPRCLNNFTAM-----AQKMIYSVIAHD 782

Query: 736 Y-------------------------------YNDHALLVWKRKDSEYRNTLGLVKSIDL 764
           Y                               Y D AL+ WK  + EY+N LGLV+SIDL
Sbjct: 783 YLALSIVPRGRNNLGITPRWAYSSGSFDTIARYVDSALIPWKGGEFEYKNILGLVRSIDL 842

Query: 765 SSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
           SSN+L GEIP E+T L+ LISLNLS+N L G IPS IG L  L+ LDLSKN L
Sbjct: 843 SSNKLSGEIPKEITKLMELISLNLSRNHLNGQIPSMIGQLKSLDVLDLSKNQL 895

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490572|ref|XP_003634116.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  754 bits (1947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/869 (50%), Positives = 557/869 (64%), Gaps = 76/869 (8%)

Query: 9   RSLQLLFVFILLSLCMKPAVGLSTGDEDADIKCIERERQALLMFKQGLIDEYGHLSSWGN 68
           RS+Q L  FI+L LC KP +G      DA + CIERERQALL FK+ + D++G LSSW +
Sbjct: 4   RSVQPLIGFIVLLLCSKPDLGSCIQVGDAKVGCIERERQALLKFKEDIADDFGILSSWRS 63

Query: 69  EDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSYMP----LRGNISSSLIGLQHLNYLNMKY 124
           E +K+DCCKWRGV CS+QTGH+T L+L    Y      LRG IS SL+ LQ LN+L++  
Sbjct: 64  EKNKRDCCKWRGVQCSSQTGHITSLDLSAYEYKDEFRHLRGKISPSLLELQQLNHLDLSG 123

Query: 125 NDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEW 184
           NDF G+ +P FIGSL  +R+LDLS+    G +P+QLGNL++L +LDLS N +M S+ L+W
Sbjct: 124 NDFEGRSMPEFIGSLTKMRYLDLSSTYLAGPLPHQLGNLSNLNFLDLSGNSNMSSENLDW 183

Query: 185 LSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRS 244
           LS+LS L ++ LN +NL +A  W   +++LPSL +L L+ C+LPS I + S+S   SS S
Sbjct: 184 LSRLSSLTHLGLNHLNLSKAIRWADAINKLPSLIDLLLKSCDLPSPI-TPSLSLVTSSMS 242

Query: 245 LAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQ 304
           LA LDLS N +S S+Y WLFN +SSLV+LDLS N LQ   PD AF N  SL YLDLS NQ
Sbjct: 243 LAVLDLSCNQLSTSIYPWLFNFNSSLVHLDLSYNHLQASPPD-AFGNMVSLEYLDLSWNQ 301

Query: 305 LV-----------------------------------------------SVPKSFRNLCR 317
           L                                                 +PKSF NLC 
Sbjct: 302 LKGEIPKSFSSSLVFLDLSNNQLQGSIPDTFGNMTSLRTVNLTRNQLEGEIPKSFNNLCN 361

Query: 318 LRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYD 377
           L+ L    NNL  +L    L    C+ DTLEIL L+ N   GSLPD+  FSSL  LHL  
Sbjct: 362 LQILKLHRNNLAGVLVKNLLA---CANDTLEILDLSHNQFIGSLPDLIGFSSLTRLHL-- 416

Query: 378 NMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHN 437
                    +N+  GTL +SI QL+QLELL + SNSL+G ++EAHL +LS+L  LDLS N
Sbjct: 417 --------GHNQLNGTLPESIAQLAQLELLKIPSNSLQGTVSEAHLFSLSKLQRLDLSFN 468

Query: 438 SLI-LNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFW 496
           SL+ LN  S WVP F+L  I L +CK GP+FP WL+TQ     LD+S + ISD +PNWFW
Sbjct: 469 SLLTLNLSSDWVPQFQLTHIFLASCKLGPRFPGWLRTQKGVGWLDISGSGISDVIPNWFW 528

Query: 497 DLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKN 556
           + + NL  LN+S+N  TG++P+ S +F+ +P ++D+S+N FEG IP        L L KN
Sbjct: 529 NFTSNLNRLNISNNQITGVVPNASIEFSRFP-QMDMSSNYFEGSIPVFIFYAGWLDLSKN 587

Query: 557 MFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMD 616
           MFSGS+S LC +S     YLDLS+NLLSGELPNC   W+ L VLNL NN FSGKI DS+ 
Sbjct: 588 MFSGSISSLCAVSRGASAYLDLSNNLLSGELPNCWAQWEGLVVLNLENNNFSGKIQDSIG 647

Query: 617 FNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLR 676
               + SLHLRNN   GELP S+K+ T+L V+DLG NK+ G IP+WIG SLP+LVVL+LR
Sbjct: 648 SLEAIESLHLRNNKLTGELPLSLKNCTKLRVIDLGRNKLCGNIPSWIGRSLPNLVVLNLR 707

Query: 677 SNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPL---- 732
            N F+G +P+ +C L++IQ+LDLS NNISG +P+C NN TAM    S      Y +    
Sbjct: 708 FNEFYGSIPMDMCQLKKIQILDLSNNNISGMIPRCFNNFTAMVQQGSLVITYNYTIPCFK 767

Query: 733 ---RTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLS 788
              R   Y D  ++ WK ++ EY  TLGL+KSIDLSSN L GEIP EVT+L+ LISLNLS
Sbjct: 768 PLSRPSSYVDKQMVQWKGRELEYEKTLGLLKSIDLSSNELSGEIPREVTNLLDLISLNLS 827

Query: 789 KNSLTGPIPSKIGGLTLLNSLDLSKNMLM 817
           +N LTG IP  IG L  +++LDLS N L 
Sbjct: 828 RNFLTGLIPPTIGQLKAMDALDLSWNRLF 856

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105895|ref|XP_002333753.1| predicted protein [Populus trichocarpa] gi|222838401|gb|EEE76766.1| predicted protein [Populus trichocarpa]

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/823 (49%), Positives = 530/823 (64%), Gaps = 32/823 (3%)

Query: 16  VFILLSLCMKPAVGLSTGDEDADIKCIERERQALLMFKQGLIDEYGHLSSWGNEDDKKDC 75
           + I+L L   P  G  TG    +I CIERERQALL FK+ +IDE G LSSWG E++K+DC
Sbjct: 7   LIIVLVLLHIPFPGFITGATGGEIGCIERERQALLKFKEDIIDEDGVLSSWGGEEEKRDC 66

Query: 76  CKWRGVSCSNQTGHVTMLNLQF-----RSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGK 130
           CKWRGV C N TGHVT LNL         + PL G +S+SL+ LQHLNYL++  N+   +
Sbjct: 67  CKWRGVGCDNITGHVTSLNLHSSPLYEHHFTPLTGKVSNSLLELQHLNYLDLSLNNLD-E 125

Query: 131 QIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSF 190
            I  FIGSL ++R+L+LS   FT  +PY L NL+ LQ LDLS++FD   + L WLS LS 
Sbjct: 126 SIMDFIGSLSSLRYLNLSYNLFTVTIPYHLRNLSRLQSLDLSYSFDASVENLGWLSHLSS 185

Query: 191 LEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDL 250
           LE++ L+  +L +  DWLQVV+ LP L +L+L  C+L  +I S  +SF NSS+ LA L L
Sbjct: 186 LEHLDLSGSDLSKVNDWLQVVTNLPRLKDLRLNQCSLTDIIPSP-LSFMNSSKFLAVLHL 244

Query: 251 SLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVS-VP 309
           S N++S+++Y WL+N S+SL  LDLS N+LQG +PD  F   ++L+ L LS NQL   +P
Sbjct: 245 SNNNLSSAIYPWLYNLSNSLADLDLSGNQLQGLVPD-GFRKMSALTNLVLSRNQLEGGIP 303

Query: 310 KSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSS 369
           +S   +C L  L    NNLT  L +L   L   +  +LEIL+L  N LRGSL DI  FSS
Sbjct: 304 RSLGEMCSLHTLDLCHNNLTGELSDLTRNLYGRTESSLEILRLCQNQLRGSLTDIARFSS 363

Query: 370 LKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRL 429
           L+EL +          +NN+  G++ +SIG LS+L+  DV+ NSL+G+++  H SNLS+L
Sbjct: 364 LRELDI----------SNNQLNGSIPESIGFLSKLDYFDVSFNSLQGLVSGGHFSNLSKL 413

Query: 430 TYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISD 489
            +LDLS+NSL+L F S W P+F+L  I L +C  GP FPKWL+TQ K   LD+S+A ISD
Sbjct: 414 KHLDLSYNSLVLRFKSDWDPAFQLKNIHLSSCHLGPCFPKWLRTQIKVRLLDISSASISD 473

Query: 490 TVPNWFWDLSPNLYYLNLSHNHFTGMLPDLS--QKFTAYPPEIDLSANSFEGPIPPIPLT 547
           TVPNWFW+L P L +LN+SHN   G LPD S         P  DLS N FEG +P  P  
Sbjct: 474 TVPNWFWNLLPKLAFLNISHNLMRGTLPDFSSVDAVDDTFPGFDLSFNRFEGLLPAFPFN 533

Query: 548 VTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKF 607
             SLIL  N+FSG +S +C I  +   +LDLS+NLL+G+LPNC  NW  L VLNLANN  
Sbjct: 534 TASLILSNNLFSGPISLICNIVGKDLSFLDLSNNLLTGQLPNCFMNWSTLVVLNLANNNL 593

Query: 608 SGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSL 667
           SG+IP S+     + +L L  NS  GELP S+K+ + L  LDL  N++SG IPAWIG+SL
Sbjct: 594 SGEIPSSVGSLFSLQTLSLNKNSLYGELPMSLKNCSMLKFLDLSRNQLSGEIPAWIGESL 653

Query: 668 PDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAM 727
             L+ LSL+SN F G +P+ +C L  +++LDLSQN ISG +P+CLNNLT M     +  +
Sbjct: 654 SSLMFLSLKSNEFIGSIPLHLCQLTNLRILDLSQNTISGAIPKCLNNLTTMVLKGEAETI 713

Query: 728 IRYPLRTD----------YYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EV 776
           I     T           YY + A + WK +D EY   LGL++ ID + N L GEIP E+
Sbjct: 714 IDNLYLTSMRCGAIFSGRYYINKAWVGWKGRDYEYERYLGLLRVIDFAGNNLSGEIPEEI 773

Query: 777 TSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLMRA 819
           T L+GL++LNLS+N+LTG IP  IG L  L SLDLS N    A
Sbjct: 774 TGLLGLVALNLSRNNLTGVIPQTIGLLKSLESLDLSGNQFSGA 816

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147807651|emb|CAN64389.1| hypothetical protein VITISV_018647 [Vitis vinifera]

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/858 (47%), Positives = 534/858 (62%), Gaps = 100/858 (11%)

Query: 17  FILLSLCMKPAVGLSTGDEDADIKCIERERQALLMFKQGLIDEYGHLSSWGNEDDKKDCC 76
             LL LC +  + +     DA + CIERERQALL FKQG++D+YG LSSWGN +DK+DCC
Sbjct: 12  LFLLLLCFEACLRVG----DAKVGCIERERQALLHFKQGVVDDYGMLSSWGNGEDKRDCC 67

Query: 77  KWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFI 136
           KWRGV C+NQTGHV ML+L            +   +G+ +       +   GGK  P+ +
Sbjct: 68  KWRGVECNNQTGHVIMLDLH-----------TPPPVGIGY-------FQSLGGKIGPS-L 108

Query: 137 GSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNF-DMLSKKLEWLSQLSFLEYVR 195
             L++++HL+LS   F G +P QLGNL++LQ LDL  N+ DM    L+WLS L  L ++ 
Sbjct: 109 AELQHLKHLNLSWNQFEGILPTQLGNLSNLQSLDLGHNYGDMSCGNLDWLSDLPLLTHLD 168

Query: 196 LNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDV 255
           L+ VNL +A  W Q ++++PSLTEL L    LP +I + S+S  NSS SLA LDLS N +
Sbjct: 169 LSGVNLSKAIHWPQAINKMPSLTELYLSDTQLPPIIPTISISHINSSTSLAVLDLSRNGL 228

Query: 256 SNSVYYWLFNSSSSLV------------------------YLDLSSNKLQGPIPDS---- 287
           ++S+Y WLF  +S LV                        YLDLS N+L+G IPD+    
Sbjct: 229 TSSIYPWLFCFNSVLVHLDLCMNDLNCSILDAFGNMTTLAYLDLSLNELRGSIPDAFGNM 288

Query: 288 -------------------AFPNPTSLSYLDLSNNQLVS-VPKSFRNLCRLRALYQDSNN 327
                              AF N TSL+YLDLS+NQL   +PKS  +LC L+ L+   NN
Sbjct: 289 TTLAHLDLHSNHLNGSIPDAFGNMTSLAYLDLSSNQLEGEIPKSLTDLCNLQELWLSRNN 348

Query: 328 LTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNN 387
           LT L    FL    CS  TLE+L L+ N  +GS PD++ FS L+EL L  N L+      
Sbjct: 349 LTGLKEKDFLA---CSNHTLEVLGLSYNQFKGSFPDLSGFSQLRELSLGFNQLN------ 399

Query: 388 NRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGW 447
               GTL +SIGQL+QL++L + SNSL+G ++  HL  LS L  LDLS NSL  N     
Sbjct: 400 ----GTLPESIGQLAQLQVLSIPSNSLRGTVSANHLFGLSNLINLDLSFNSLTFNISLEQ 455

Query: 448 VPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNL 507
           VP F  + I L +CK GP+FP WLQTQ    ELD+SA+ ISD +PNWFW+L+ +  +LN+
Sbjct: 456 VPQFRASRIMLASCKLGPRFPNWLQTQEVLRELDISASGISDAIPNWFWNLTSDFKWLNI 515

Query: 508 SHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQ 567
           S+NH +G LP+L     A P  +D+S+N  EG IP        L L KN+FSGS+S  C 
Sbjct: 516 SNNHISGTLPNLQ----ATPLMLDMSSNCLEGSIPQSVFNAGWLDLSKNLFSGSISLSCG 571

Query: 568 ISDE---HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSL 624
            +++      +LDLS+N LSGEL NC + W+ L VLNLANN FSGKI DS+     M +L
Sbjct: 572 TTNQPSWGLSHLDLSNNRLSGELSNCWERWKYLFVLNLANNNFSGKIKDSIGLLDQMQTL 631

Query: 625 HLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRV 684
           HLRNNSF G LPSS+K+   L ++DLG NK+SG I AW+G SL DL+VL+LRSN F+G +
Sbjct: 632 HLRNNSFTGALPSSLKNCRALRLIDLGKNKLSGKITAWMGGSLSDLIVLNLRSNEFNGSI 691

Query: 685 PVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTD-----YYND 739
           P  +C L++IQ+LDLS NN+SG +P+CL NLTAM   +S   ++ Y    D     YY D
Sbjct: 692 PSSLCQLKQIQMLDLSSNNLSGKIPKCLKNLTAMAQKRSQ--VLFYDTWYDASNPHYYVD 749

Query: 740 HALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPS 798
             L+ WK K+ EY+ TLGL+KSID SSN+L GEIP EVT LV L+SLNLS N+L G IP+
Sbjct: 750 STLVQWKGKEQEYKKTLGLIKSIDFSSNKLIGEIPIEVTDLVELVSLNLSSNNLIGSIPT 809

Query: 799 KIGGLTLLNSLDLSKNML 816
            IG L LL+ LDLS+N L
Sbjct: 810 TIGQLKLLDVLDLSQNQL 827

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490576|ref|XP_003634117.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/838 (48%), Positives = 527/838 (62%), Gaps = 96/838 (11%)

Query: 36  DADIKCIERERQALLMFKQGLIDEYGHLSSWGNEDDKKDCCKWRGVSCSNQTGHVTMLNL 95
           DA + C ERERQALL FKQG++D+ G LSSWGN +DK+DCCKWRGV C+NQTGHV  L+L
Sbjct: 30  DAKVGCRERERQALLHFKQGVVDDDGVLSSWGNGEDKRDCCKWRGVKCNNQTGHVIRLDL 89

Query: 96  QFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGR 155
             +S   L G I  SL  LQHL +LN+  NDF      AF                FTG 
Sbjct: 90  HAQS---LGGKIGPSLAELQHLKHLNLSSNDF-----EAF--------------PNFTGI 127

Query: 156 VPYQLGNLTSLQYLDLSFNF-DMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQL 214
           +P QLGNL++LQ LDL +N+ DM    L+WL  L FL ++ L+ VNL +A  W Q ++++
Sbjct: 128 LPTQLGNLSNLQSLDLGYNYGDMTCGNLDWLCHLPFLTHLDLSWVNLSKAIHWPQAINKM 187

Query: 215 PSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLV--- 271
           PSLTEL L    LPS+I + S+S  NSS SLA L L  N +++S+Y WLFN SSSLV   
Sbjct: 188 PSLTELYLIDTQLPSIIPTISISHINSSTSLAVLHLPSNGLTSSIYPWLFNFSSSLVHLD 247

Query: 272 ---------------------YLDLSSNKLQGPIPDS----------------------- 287
                                YLDLSSN+L+G IPD+                       
Sbjct: 248 LSWNDLNGSTPDAFGNMTTLAYLDLSSNELRGSIPDAFGNMTTLAYLDLSWNKLRGSIPD 307

Query: 288 AFPNPTSLSYLDLSNNQLVS-VPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDT 346
           AF N TSL+YLDLS N+L   +PKS  +LC L+ L+   NNLT L    +L    C  +T
Sbjct: 308 AFGNMTSLAYLDLSLNELEGEIPKSLTDLCNLQELWLSQNNLTGLKEKDYLA---CPNNT 364

Query: 347 LEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLEL 406
           LE+L L+ N L+GS P+++ FS L+EL          +L+ N+  GTL +SIGQL+QL+L
Sbjct: 365 LEVLDLSYNQLKGSFPNLSGFSQLREL----------FLDFNQLKGTLHESIGQLAQLQL 414

Query: 407 LDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQ 466
           L + SNSL+G ++  HL  LS L+YLDLS NSL  N     VP F  + I L +CK GP+
Sbjct: 415 LSIPSNSLRGTVSANHLFGLSNLSYLDLSFNSLTFNISLEQVPQFRASSILLASCKLGPR 474

Query: 467 FPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAY 526
           FP WLQTQ   SELD+SA+ ISD +PNWFW+L+ +L +LN+S+NH +G LP+L  +    
Sbjct: 475 FPNWLQTQEVLSELDISASGISDVIPNWFWNLTSDLNWLNISNNHISGTLPNLQARSYL- 533

Query: 527 PPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDE---HFRYLDLSDNLL 583
              +D+S+N  EG IP        L L KN+FSGS+S  C   ++      +LDLS+N L
Sbjct: 534 --GMDMSSNCLEGSIPQSVFNARWLDLSKNLFSGSISLSCGTPNQPSWGLSHLDLSNNRL 591

Query: 584 SGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFT 643
           SGELPNC + W+ L VL+LANN FSGKI +S+     M +LHL NNSF G LPSS+K+  
Sbjct: 592 SGELPNCWEQWKDLIVLDLANNNFSGKIKNSIGLLHQMQTLHLCNNSFTGALPSSLKNCR 651

Query: 644 QLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNN 703
            L ++DLG NK+SG I AW+G SL DL+VL+LRSN F+G +P  +C L++IQ+LDLS NN
Sbjct: 652 ALRLIDLGKNKLSGKITAWMGGSLSDLIVLNLRSNEFNGSIPSSLCQLKQIQMLDLSSNN 711

Query: 704 ISGTVPQCLNNLTAMTANKSSNAM---IRYPLRTDY-YNDHALLVWKRKDSEYRNTLGLV 759
           +SG +P+CL NLTAM A K S  +     Y L   Y Y D  L+ WK K+ EY+ TL  +
Sbjct: 712 LSGKIPKCLKNLTAM-AQKGSPVLSYETIYNLSIPYHYVDSTLVQWKGKEQEYKKTLRFI 770

Query: 760 KSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
           KSID S N+L GEIP EVT LV L+SLNLS+N+L G IP+ IG L LL+ LDLS+N L
Sbjct: 771 KSIDFSRNQLIGEIPIEVTDLVELVSLNLSRNNLIGSIPTTIGQLKLLDVLDLSQNQL 828

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105891|ref|XP_002333752.1| predicted protein [Populus trichocarpa] gi|222838400|gb|EEE76765.1| predicted protein [Populus trichocarpa]

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/864 (48%), Positives = 541/864 (62%), Gaps = 86/864 (9%)

Query: 27  AVGLSTGDEDADIKCIERERQALLMFKQGLIDEYGHLSSWGNEDDKKDCCKWRGVSCSNQ 86
           A G  +G + A   CIERERQALL FK+ LID++G LS+WG+E++K+DCCKWRGV CSN+
Sbjct: 26  APGFISGVKGATFGCIERERQALLKFKEDLIDDFGLLSTWGSEEEKRDCCKWRGVGCSNR 85

Query: 87  TGHVTMLNLQFRSY----MPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNI 142
           TGHVT L+L   +Y      L GNIS+SL+ LQHL+YLN+  + FGG   P FIGSLK +
Sbjct: 86  TGHVTHLDLHRENYNGYYYQLSGNISNSLLELQHLSYLNLNGSRFGGSSFPYFIGSLKKL 145

Query: 143 RHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLG 202
           R+LDLS+    G +  Q  NL+ LQYLDLS+   +    L++LS    L+++ L   +L 
Sbjct: 146 RYLDLSSIHVDGTLSNQFWNLSRLQYLDLSYIQGVNFTSLDFLSNFFSLQHLDLRGNDLS 205

Query: 203 EATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYW 262
           E  DWLQV+++LP L EL L      S+I S S+S  NSS SLA +D S ND+S+S+++W
Sbjct: 206 ETIDWLQVLNRLPRLHELLLS-SCSLSIIGSPSLSLVNSSESLAIVDFSFNDLSSSIFHW 264

Query: 263 LFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALY 322
           L N  +SL+ LDLS N LQG IPD  F N TSL  LDLS+NQL     SF  +C L  L 
Sbjct: 265 LANFGNSLIDLDLSHNNLQGSIPD-VFTNMTSLRTLDLSSNQLQGDLSSFGQMCSLNKLC 323

Query: 323 QDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLD- 381
              NNL   L  LF     C  ++LEILQL+ N L GSLPDIT F+S++EL+L  N L+ 
Sbjct: 324 ISENNLIGELSQLF----GCVENSLEILQLDRNQLYGSLPDITRFTSMRELNLSGNQLNG 379

Query: 382 -------------VLYLNNNRFTGTLT-----------------------KSIGQLSQLE 405
                        +LYLN+N+ TG+LT                       +SIG L QLE
Sbjct: 380 SLPERFSQRSELVLLYLNDNQLTGSLTDVAMLSSLRELGISNNRLDGNVSESIGSLFQLE 439

Query: 406 LLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGP 465
            L V  NSL+G+++EAH SNLS+LT LDL+ NSL L F S W P+F+L+ I L +C  GP
Sbjct: 440 KLHVGGNSLQGVMSEAHFSNLSKLTVLDLTDNSLALKFESNWAPTFQLDRIFLSSCDLGP 499

Query: 466 QFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLS-PNLYYLNLSHNHFTGMLPDLSQKFT 524
            FP+WL+ Q  F ELD+S + ISDT+PNWFW+LS   L  L+LSHN  +G+LPD S K+ 
Sbjct: 500 PFPQWLRNQTNFMELDISGSRISDTIPNWFWNLSNSKLELLDLSHNKMSGLLPDFSSKY- 558

Query: 525 AYPPEIDLSANSFEGPIPPIPLTVTS-LILFKNMFSGSLSFLCQISDEHFRYLDLSDNLL 583
           A    IDLS N FEGP+P      TS L L  N FS S  F C I  +  R LDLS+NLL
Sbjct: 559 ANLRSIDLSFNQFEGPLPHFSSDTTSTLFLSNNKFSAS--FRCDIGSDILRVLDLSNNLL 616

Query: 584 SGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFT 643
           +G +P+C +    L VLNLA+N FSGKIP S+     + +L L NNSF+GELP S++S +
Sbjct: 617 TGSIPDCLRG---LVVLNLASNNFSGKIPSSIGSMLELQTLSLHNNSFVGELPLSLRSCS 673

Query: 644 QLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNN 703
            L  LDL  NK+ G IP WIG+S+P L VLSL+SN F G +P  +CHL  I +LDLS NN
Sbjct: 674 SLVFLDLSSNKLRGEIPGWIGESMPSLKVLSLQSNGFSGSIPPNLCHLSNILILDLSLNN 733

Query: 704 ISGTVPQCLNNLTAM---TANKSSNAM--------IRYPLRTD----------------- 735
           ISG +P+CLNNLT+M   T ++S+NA+         RYP  T+                 
Sbjct: 734 ISGIIPKCLNNLTSMVQKTESESNNAVPSRSYVLESRYPPNTNGRSYRSYNLSEIGPVIV 793

Query: 736 --YYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSL 792
              Y +   + WK +   YR+TLGL++ +D S N+L GEIP E+T L+ L++LNLS N+L
Sbjct: 794 YVEYMNEIRVGWKGRADVYRSTLGLLRILDFSGNKLQGEIPEEITGLLLLVALNLSGNNL 853

Query: 793 TGPIPSKIGGLTLLNSLDLSKNML 816
           TG IP KIG L  L SLDLS N L
Sbjct: 854 TGEIPQKIGQLKQLESLDLSGNQL 877

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462661|ref|XP_002266475.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/848 (47%), Positives = 524/848 (61%), Gaps = 100/848 (11%)

Query: 25  KPAVGLSTGDEDADIKCIERERQALLMFKQGLIDEYGHLSSWGNEDDKKDCCKWRGVSCS 84
           K  +G S    DA + CIERERQALL FKQG++D+YG LSSWGN +DK+DCCKWRGV C+
Sbjct: 20  KAGLGSSLRVGDAKVGCIERERQALLHFKQGVVDDYGMLSSWGNGEDKRDCCKWRGVECN 79

Query: 85  NQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRH 144
           NQTGHV ML+L   S   L G I  SL  LQHL +LN+ +NDF                 
Sbjct: 80  NQTGHVIMLDL---SGGYLGGKIGPSLAKLQHLKHLNLSWNDFE---------------- 120

Query: 145 LDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEA 204
                   TG +P QLGNL++LQ LDL +N DM    L+WLS L  L ++ L+ VNL +A
Sbjct: 121 -------VTGILPTQLGNLSNLQSLDLRYNRDMTCGNLDWLSHLHLLTHLDLSFVNLSKA 173

Query: 205 TDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLF 264
             W Q V ++P+LTEL L    LP +  + S+S  NSS SLA L+L  ND+++S+Y WL 
Sbjct: 174 IHWPQAVKKMPALTELYLSNTQLPPIDPTISISHINSSTSLAVLELFENDLTSSIYPWLL 233

Query: 265 NSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLV------------------ 306
           N SS LV+LDLS+N L G IPD AF N T+L+YLDLS NQL                   
Sbjct: 234 NFSSCLVHLDLSNNHLNGSIPD-AFGNMTTLAYLDLSFNQLEGEIPKSFSINLVTLDLSW 292

Query: 307 -----------------------------SVPKSFRNLCRLRALYQDSNNLTDLLPNLFL 337
                                         +PKS R LC L+ L    NNLT LL   FL
Sbjct: 293 NHLHGSIPDAFGNMATLAYLHFSGNQLEGEIPKSLRGLCDLQILSLSQNNLTGLLEKDFL 352

Query: 338 KLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKS 397
               CS +TLE+L L+ N  +GS PD++ FS L+ELHL  N L+          GTL +S
Sbjct: 353 A---CSNNTLEVLDLSHNQFKGSFPDLSGFSQLRELHLEFNQLN----------GTLPES 399

Query: 398 IGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIR 457
           IGQL+QL++L + SNSL+G ++  HL  LS+L  LDLS NSL +N     VP F+   I+
Sbjct: 400 IGQLAQLQVLSLRSNSLRGTVSANHLFGLSKLWDLDLSFNSLTVNISLEQVPQFQAIEIK 459

Query: 458 LGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLP 517
           L +CK GP FP WL+TQ   S LD+SA+ I++ +PNWFW  + +L + N+S+NH +G LP
Sbjct: 460 LASCKLGPHFPNWLRTQKHLSMLDISASGIANVLPNWFWKFTSHLSWFNISNNHISGTLP 519

Query: 518 DLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEH---FR 574
           +L+   +     +D+S+N  EG IP        L L KNMFSGS+S  C  +++      
Sbjct: 520 NLTSHLSYLG--MDISSNCLEGSIPQSLFNAQWLDLSKNMFSGSISLSCGTTNQSSWGLS 577

Query: 575 YLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGE 634
           +LDLS+N LSGELP C + W+ L VLNLANN FSGKI +S+  +  M +LHLRNNS  G 
Sbjct: 578 HLDLSNNRLSGELPKCREQWKDLIVLNLANNNFSGKIKNSIGLSYHMQTLHLRNNSLTGA 637

Query: 635 LPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRI 694
           LP S+K+   L +LDLG NK+SG IP WIG SL +L+V++LRSN F+G +P+ +C L++I
Sbjct: 638 LPWSLKNCRDLRLLDLGKNKLSGKIPGWIGGSLSNLIVVNLRSNEFNGSIPLNLCQLKKI 697

Query: 695 QVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP-----LRTDYYNDHALLVWKRKD 749
            +LDLS NN+SGT+P+CLNNL+ M  N S   +I Y      L +  Y D+ L+ WK K+
Sbjct: 698 HMLDLSSNNLSGTIPKCLNNLSGMAQNGS--LVITYEEDLLFLMSLSYYDNTLVQWKGKE 755

Query: 750 SEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNS 808
            EY  TLGLVKSID S+N+L GEIP EVT LV L+SLNLS+N L GPIP  IG L  L+S
Sbjct: 756 LEYNKTLGLVKSIDFSNNKLIGEIPTEVTDLVELVSLNLSRNYLIGPIPLMIGQLKSLDS 815

Query: 809 LDLSKNML 816
           LDLS+N L
Sbjct: 816 LDLSRNRL 823

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116866|ref|XP_002331833.1| predicted protein [Populus trichocarpa] gi|222875071|gb|EEF12202.1| predicted protein [Populus trichocarpa]

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/842 (47%), Positives = 524/842 (62%), Gaps = 80/842 (9%)

Query: 27  AVGLSTGDEDADIKCIERERQALLMFKQGLIDEYGHLSSWGNEDDKKDCCKWRGVSCSNQ 86
           A G  +G + A   CIERERQALL FK+ LID++G LS+WG+E++K+DCCKWRGV CSN+
Sbjct: 26  APGFISGVKGATFGCIERERQALLKFKEDLIDDFGLLSTWGSEEEKRDCCKWRGVGCSNR 85

Query: 87  TGHVTMLNLQFRSY----MPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNI 142
           TGHVT L+L   +Y      L GNIS+SL+ LQHL+YLN+  + FGG   P FIGSLK +
Sbjct: 86  TGHVTHLDLHRENYNGYYYQLSGNISNSLLELQHLSYLNLNGSRFGGSSFPYFIGSLKKL 145

Query: 143 RHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLG 202
           R+LDLS+    G +  Q  NL+ LQYLDLS+   +    L++LS    L+++ L   +L 
Sbjct: 146 RYLDLSSIHVDGTLSNQFWNLSRLQYLDLSYIQGVNFTSLDFLSNFFSLQHLDLRGNDLS 205

Query: 203 EATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYW 262
           E  DWLQV+++LP L EL L      S+I S S+S  NSS SLA +D S ND+S+S+++W
Sbjct: 206 ETIDWLQVLNRLPRLHELLLS-SCSLSIIGSPSLSLVNSSESLAIVDFSFNDLSSSIFHW 264

Query: 263 LFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALY 322
           L N  +SL+ LDLS N LQG IPD  F N TSL  LDLS+NQL     SF  +C L  L 
Sbjct: 265 LANFGNSLIDLDLSHNNLQGSIPD-VFTNMTSLRTLDLSSNQLQGDLSSFGQMCSLNKLC 323

Query: 323 QDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLD- 381
              NNL   L  LF     C  ++LEILQL+ N L GSLPDIT F+S++EL+L  N L+ 
Sbjct: 324 ISENNLIGELSQLF----GCVENSLEILQLDRNQLYGSLPDITRFTSMRELNLSGNQLNG 379

Query: 382 -------------VLYLNNNRFTGTLT-----------------------KSIGQLSQLE 405
                        +LYLN+N+ TG+LT                       +SIG L QLE
Sbjct: 380 SLPERFSQRSELVLLYLNDNQLTGSLTDVAMLSSLRELGISNNRLDGNVSESIGSLFQLE 439

Query: 406 LLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGP 465
            L V  NSL+G+++EAH SNLS+LT LDL+ NSL L F S W P+F+L+ I L +C  GP
Sbjct: 440 KLHVGGNSLQGVMSEAHFSNLSKLTVLDLTDNSLALKFESNWAPTFQLDRIFLSSCDLGP 499

Query: 466 QFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLS-PNLYYLNLSHNHFTGMLPDLSQKFT 524
            FP+WL+ Q  F ELD+S + ISDT+PNWFW+LS   L  L+LSHN  +G+LPD S K+ 
Sbjct: 500 PFPQWLRNQTNFMELDISGSRISDTIPNWFWNLSNSKLELLDLSHNKMSGLLPDFSSKY- 558

Query: 525 AYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLS 584
           A    IDLS N FEGP                      S  C I     + LDLS+NLL 
Sbjct: 559 ANLRSIDLSFNQFEGPA---------------------SCPCNIGSGILKVLDLSNNLLR 597

Query: 585 GELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQ 644
           G +P+C  N+  L+VLNLA+N FSGKI  S+     + +L L NNSF+GELP S+++ + 
Sbjct: 598 GWIPDCLMNFTSLSVLNLASNNFSGKILSSIGSMVYLKTLSLHNNSFVGELPLSLRNCSS 657

Query: 645 LTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNI 704
           L  LDL  NK+ G IP WIG+S+P L VLSLRSN F+G +   +CHL  I +LDLS NNI
Sbjct: 658 LAFLDLSSNKLRGEIPGWIGESMPSLKVLSLRSNGFNGSILPNLCHLSNILILDLSLNNI 717

Query: 705 SGTVPQCLNNLTAMTANKSS-----NAMIRYPLRT----DYYNDHALLVWKRKDSEYRNT 755
           +G +P+CLNNLT+M     S     N  +  P  T    D Y +   + WK ++  Y +T
Sbjct: 718 TGIIPKCLNNLTSMVQKTESEYSLANNAVLSPYFTSDSYDAYQNKMRVGWKGREDGYEST 777

Query: 756 LGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKN 814
           LGL++ I+L+ N+L GEIP E+T L+ L++LNLS N+LTG IP KIG L  L SLDLS N
Sbjct: 778 LGLLRIINLARNKLIGEIPEEITGLLLLLALNLSGNTLTGEIPQKIGQLKQLESLDLSGN 837

Query: 815 ML 816
            L
Sbjct: 838 QL 839

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466147|ref|XP_002270042.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/887 (45%), Positives = 531/887 (59%), Gaps = 113/887 (12%)

Query: 23  CMKPAVGLSTGDEDADIKCIERERQALLMFKQGLIDEYGHLSSWGNEDDKKDCCKWRGVS 82
           C KP +G  TG       CIERERQALL F++GL+D YG LSSWG  DD +DCC+WRGV 
Sbjct: 19  CAKPGLGKVTG-------CIERERQALLHFRRGLVDRYGLLSSWG--DDNRDCCQWRGVQ 69

Query: 83  CSNQTGHVTMLNL---------QFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIP 133
           CSNQ+GH+ ML+L         Q   Y  LRG IS SL+ L HL +L++ YNDF G+ IP
Sbjct: 70  CSNQSGHIIMLHLPAPPNEDYSQDVIYQSLRGEISPSLLELDHLTHLDLSYNDFEGRHIP 129

Query: 134 AFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEY 193
            F+GSL  +++L+LS+A F   VP QLGNL++L  LDLS N+ + S  LEWLS+LS L +
Sbjct: 130 PFLGSLSRMQYLNLSHANFAQTVPTQLGNLSNLLSLDLSDNYLLNSGNLEWLSRLSSLRH 189

Query: 194 VRLNQVNLGEATDWLQVVSQLPSLTELQLRGC--NLPSVIASSSVSFSNSSRSLAHLDLS 251
           + L+ VNL EA  W Q +++LPSL  L L+ C       +   S+S  NSS  L  LDLS
Sbjct: 190 LDLSSVNLSEAIHWSQAINKLPSLIHLDLQHCYLPPIPPLTIPSLSHGNSSVPLVFLDLS 249

Query: 252 LNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDL----------- 300
            N +++S+Y WL N S++L++LDLS N L G IP+ AF N +SL YLDL           
Sbjct: 250 GNYLTSSIYPWLLNFSTTLLHLDLSFNGLNGSIPEYAFGNMSSLEYLDLHSSELDDEIPD 309

Query: 301 -------------SNNQLV-------------------------SVPKSFRNLCRLRALY 322
                        S NQL                          S+P +  N+  L+ L 
Sbjct: 310 TIGDMGSLAYLDISENQLWGSIPDTVGKMVLLSHLDLSLNQLQGSIPDTVGNMVSLKKLS 369

Query: 323 QDSNNLTDLLPNLFLKLSN---------------------CSRDTLEILQLNSNMLRGSL 361
              N+L   +P     L N                     C+ DTLE L L+ N   GS+
Sbjct: 370 LSENHLQGEIPKSLSNLCNLQELELDRNNLSGQLAPDFVACANDTLETLFLSDNQFSGSV 429

Query: 362 PDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEA 421
           P +  FSSL+ELH          L+ N+  GTL +S+GQL+ L+ LD+ASNSL+G I+EA
Sbjct: 430 PALIGFSSLRELH----------LDFNQLNGTLPESVGQLANLQSLDIASNSLQGTISEA 479

Query: 422 HLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELD 481
           HL NLS L+YL+LS NSL  N    WVP F+L  +RL +CK GP+FP WL+TQN+ SELD
Sbjct: 480 HLFNLSWLSYLNLSSNSLTFNMSLDWVPPFQLLSLRLASCKLGPRFPSWLRTQNQLSELD 539

Query: 482 VSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPI 541
           +S +EISD +P+WFW+++  +  L++S+N   G LP+LS +F ++   ID+S+N FEG I
Sbjct: 540 ISNSEISDVLPDWFWNVTSTVNTLSISNNRIKGTLPNLSSEFGSF-SNIDMSSNCFEGSI 598

Query: 542 PPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLN 601
           P +P  V  L L  N  SGS+S LC +  E       +++L  G LPNC   W+ L VLN
Sbjct: 599 PQLPYDVQWLDLSNNKLSGSISLLCTVGTELLLLDLSNNSLSGG-LPNCWAQWESLVVLN 657

Query: 602 LANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPA 661
           L NN+FSG+IP S      + +LHLRNN+  GELP S K+ T L  +DL  N++SG IP 
Sbjct: 658 LENNRFSGQIPISFGSLRSIQTLHLRNNNLTGELPLSFKNCTSLRFIDLAKNRLSGKIPE 717

Query: 662 WIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTAN 721
           WIG SLP+L VL+L SN F G +  ++C L+ IQ+LDLS NN+ G VP+C+   TAMT  
Sbjct: 718 WIGGSLPNLTVLNLGSNRFSGGICPELCQLKNIQILDLSSNNMLGVVPRCVGGFTAMTKK 777

Query: 722 KSSNAMIRYP----------LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYG 771
            S   +  Y           +R  +Y D AL+ WK ++ EY++TLGLVKSID SSN+L G
Sbjct: 778 GSLVIVHNYSFADFSSKYSLIRNAFYVDRALVKWKGREFEYKSTLGLVKSIDFSSNKLSG 837

Query: 772 EIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLM 817
           EIP EV  LV L+SLNLS+N+LT  IP++IG L  L  LDLS+N L 
Sbjct: 838 EIPEEVIDLVELVSLNLSRNNLTRLIPARIGQLKSLEVLDLSQNQLF 884

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560149|ref|XP_002521092.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223539661|gb|EEF41243.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/882 (45%), Positives = 550/882 (62%), Gaps = 82/882 (9%)

Query: 6   GRCRSLQLLFVFILLSLCMKPAVGLST--GDEDADI--KCIERERQALLMFKQGLIDEYG 61
           G   SLQL ++ ++ + CM   +  S   G  +A +  +CI+ ER ALL FK+ L D   
Sbjct: 3   GSTISLQL-YLKLVWTACMLAIIRFSCFLGSANATLSAECIDSERAALLKFKKSLNDP-A 60

Query: 62  HLSSWGNEDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSS----------- 110
            LSSW +  +++DCC+W  V+C +QTGHV ML+L  R  +   G+  SS           
Sbjct: 61  LLSSWVS-GEEEDCCRWNRVTCDHQTGHVIMLDL--RPIIKDEGDDFSSSENLLSGELSS 117

Query: 111 -LIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYL 169
            L+ L +L++L++  N F  ++IP F GSL N+ +L+LS   F+G  PYQLGNL+ LQYL
Sbjct: 118 SLLELPYLSHLDLSQNIF--QKIPDFFGSLSNLTYLNLSFNMFSGTFPYQLGNLSMLQYL 175

Query: 170 DLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPS 229
           DLS+N DM +  +EWL +LS L ++ ++ V  G+  DWL+ +   PSL+ L L  C    
Sbjct: 176 DLSWNSDMTADNVEWLDRLSSLRFLHISFVYFGKVVDWLKSIKMHPSLSTLILHRCQFDE 235

Query: 230 VIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAF 289
              SS  S  +SS+SLA+L L  +  + S+  WL N S+ +V+L+L  ++L+GPIP   F
Sbjct: 236 TDPSSLSS-VDSSKSLANLRLFFSSFNTSINSWLVNVSTVIVHLELQDDQLKGPIP-YFF 293

Query: 290 PNPTSLSYLDLSNNQLVS-VPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLE 348
            +  SL +L LS NQL   +P SF NLCRL+ L    N+L++  P+    L  C++ +LE
Sbjct: 294 GDMRSLVHLVLSYNQLEGPMPISFGNLCRLKTLDLSGNHLSEPFPDFVGNL-RCAKKSLE 352

Query: 349 ILQLNSNMLRGSLPDITLFSSLKELHLYDNMLD--------------------------- 381
           IL L++N LRGS+PDIT F SL+ELHL  N LD                           
Sbjct: 353 ILSLSNNQLRGSIPDITEFESLRELHLDRNHLDGSFPPIFKQFSKLLNLNLEGNRLVGPL 412

Query: 382 ----------VLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTY 431
                      L+L NN  +G +++S+G+L  L +LD +SN L G+++E HLSNLSRL  
Sbjct: 413 PSFSKFSSLTELHLANNELSGNVSESLGELFGLRILDASSNKLNGVVSEVHLSNLSRLQQ 472

Query: 432 LDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTV 491
           LDLS+NSL LNF + W PSF+L++I+L +C+ GP FP WLQ+Q  FS LD+S +EISD V
Sbjct: 473 LDLSYNSLALNFSADWTPSFQLDMIKLSSCRIGPHFPGWLQSQRNFSHLDISNSEISDVV 532

Query: 492 PNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSL 551
           P+WFW+ S  + YLNLS NH  G +P+ S +F   P  +DLS+N F G IP      + L
Sbjct: 533 PSWFWNFSSKIRYLNLSFNHLYGKVPNQSAEFYTLP-SVDLSSNLFYGTIPSFLSNTSVL 591

Query: 552 ILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKI 611
            L KN F+GSLSFLC + D    YLDLSDN LSG LP+C   +++L +LN  NN  SG I
Sbjct: 592 NLSKNAFTGSLSFLCTVMDSGMTYLDLSDNSLSGGLPDCWAQFKQLVILNFENNDLSGSI 651

Query: 612 PDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLV 671
           P SM F   + +LHLRNNSF GE+PSS+++ +QL +LDLG NK++G + AWIG+SL  L+
Sbjct: 652 PSSMGFLYNIQTLHLRNNSFTGEMPSSLRNCSQLELLDLGGNKLTGKVSAWIGESLTKLI 711

Query: 672 VLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP 731
           VL LRSN F+G V   VC+L+ +Q+LDLS N+ SG++P CL+NLTA+  N++S + + + 
Sbjct: 712 VLRLRSNEFYGNVSSTVCYLRYLQILDLSFNHFSGSIPSCLHNLTALAQNQNSTSALIHQ 771

Query: 732 LRTDY----------------YNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP- 774
               Y                Y D+AL+VW+  + EY  TL L+K IDLS+N L GEIP 
Sbjct: 772 FFNGYSYWKGSGDWGTKYSADYIDNALVVWRGVEQEYGKTLKLLKIIDLSNNNLTGEIPE 831

Query: 775 EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
           E+TSL+G+ISLNLS+N+LTG IP +I  L LL SLDLS N L
Sbjct: 832 EMTSLLGMISLNLSRNNLTGAIPGRISHLKLLESLDLSHNKL 873

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	820
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.909	0.824	0.303	2.4e-69
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.873	0.748	0.304	1.2e-67
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.878	0.805	0.306	5.1e-67
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.823	0.686	0.320	1.2e-66
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.858	0.746	0.301	1.5e-65
TAIR|locus:2046357	890	RLP23 "receptor like protein 2	0.786	0.724	0.289	9.8e-65
TAIR|locus:2046585	808	RLP27 "receptor like protein 2	0.673	0.683	0.318	1.9e-60
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.786	0.567	0.314	3.1e-57
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.760	0.736	0.297	8.6e-56
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.604	0.556	0.300	1.3e-55

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
 Identities = 251/827 (30%), Positives = 382/827 (46%)

Query:    37 ADIKCIERERQALLMFKQGLIDEYGHLSSWGNEDDKKDCCKWRGVSCSNQTGHVTMLNLQ 96
             A  KCI  ERQALL F+  L D    L SW   D    CC W GV C  +T HV  ++L+
Sbjct:    29 ASPKCISTERQALLTFRAALTDLSSRLFSWSGPD----CCNWPGVLCDARTSHVVKIDLR 84

Query:    97 -----FRS--YM--PLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDL 147
                   RS  Y    LRG I  SL  L+ L+YL++  NDF   +IP FIG + ++R+L+L
Sbjct:    85 NPSQDVRSDEYKRGSLRGKIHPSLTQLKFLSYLDLSSNDFNELEIPEFIGQIVSLRYLNL 144

Query:   148 SNAGFTGRVPYQLGNLTSLQYLDL---SFN----FDMLSKKLEWLSQLSF-LEYVRLNQV 199
             S++ F+G +P  LGNL+ L+ LDL   SF       + +  L WLS LS  L+Y+ +  V
Sbjct:   145 SSSSFSGEIPTSLGNLSKLESLDLYAESFGDSGTLSLRASNLRWLSSLSSSLKYLNMGYV 204

Query:   200 NL-GEATDWLQVVSQLPSLTELQLRGCNLPXXXXXXXXXXXXXXXXLAHLDLSLNDVSNS 258
             NL G    WLQ  S++ +L EL L    L                 L  LDLS N +++ 
Sbjct:   205 NLSGAGETWLQDFSRISALKELHLFNSELKNLPPTLSSSADLKL--LEVLDLSENSLNSP 262

Query:   259 VYYWLFNXXXXXXXXXXXXNKLQGPIPDSAFPNPTSLSYLDLSNNQLVS--VPKSFRNLC 316
             +  WLF             + LQG IP + F N   L  LDLSNN  +   +P    +L 
Sbjct:   263 IPNWLFGLTNLRKLFLRW-DFLQGSIP-TGFKNLKLLETLDLSNNLALQGEIPSVLGDLP 320

Query:   317 RLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLY 376
             +L+ L   +N L   +       S    ++L  L L+SN L G+LP+     SL+ L   
Sbjct:   321 QLKFLDLSANELNGQIHGFLDAFSRNKGNSLVFLDLSSNKLAGTLPES--LGSLRNLQTL 378

Query:   377 DNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSH 436
             D       L++N FTG++  SIG ++ L+ LD+++N++ G I E+ L  L+ L  L+L  
Sbjct:   379 D-------LSSNSFTGSVPSSIGNMASLKKLDLSNNAMNGTIAES-LGQLAELVDLNLMA 430

Query:   437 NSL--ILNFGSGWVPSFELNIIRLGACKQGP---QFPK-WLQTQNKFSELDVSAAEISDT 490
             N+   +L   S +V    L  IRL          + P  W+    +   + +    I   
Sbjct:   431 NTWGGVLQ-KSHFVNLRSLKSIRLTTEPYRSLVFKLPSTWIPPF-RLELIQIENCRIG-L 487

Query:   491 VPNWFWDLSPNLYYLNLSHNHFTGMLPD-----LSQKFTAYPPEIDLSANSFEGPIPP-- 543
              P W   +   L ++ L +      +PD     +S K T Y   + L+ N  +G +P   
Sbjct:   488 FPMWL-QVQTKLNFVTLRNTGIEDTIPDSWFSGISSKVT-Y---LILANNRIKGRLPQKL 542

Query:   544 -IPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELP-NCSKNWQKLTVLN 601
               P  + ++ L  N F G+       + E    L L +N  SG LP N      ++  + 
Sbjct:   543 AFP-KLNTIDLSSNNFEGTFPLWSTNATE----LRLYENNFSGSLPQNIDVLMPRMEKIY 597

Query:   602 LANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPA 661
             L +N F+G IP S+     +  L LR N F G  P        L  +D+  N +SG IP 
Sbjct:   598 LFSNSFTGNIPSSLCEVSGLQILSLRKNHFSGSFPKCWHRQFMLWGIDVSENNLSGEIPE 657

Query:   662 WIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTAN 721
              +G  LP L VL L  N+  G++P  + +   +  +DL  N ++G +P  +  L+++   
Sbjct:   658 SLG-MLPSLSVLLLNQNSLEGKIPESLRNCSGLTNIDLGGNKLTGKLPSWVGKLSSLFML 716

Query:   722 KSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEV-TSLV 780
             +  +      +  D  N   L +     ++    +   K I   +    G   EV  +LV
Sbjct:   717 RLQSNSFTGQIPDDLCNVPNLRILDLSGNKISGPIP--KCISNLTAIARGTNNEVFQNLV 774

Query:   781 GLI-----------SLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
              ++           S+NLS N+++G IP +I GL  L  L+LS+N +
Sbjct:   775 FIVTRAREYEAIANSINLSGNNISGEIPREILGLLYLRILNLSRNSM 821

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
 Identities = 240/788 (30%), Positives = 382/788 (48%)

Query:    65 SWGNEDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKY 124
             SWGN  D   CC W GV+C+ ++G V  L+L   S +  R + +SS+  L  L  L++ +
Sbjct:    75 SWGNNSD---CCNWEGVTCNAKSGEVIELDLSCSS-LHGRFHSNSSIRNLHFLTTLDLSF 130

Query:   125 NDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFN-FD-MLSKKL 182
             NDF G QI + I +L ++ +LDLS+  F+G++   +GNL+ L YL+L  N F       +
Sbjct:   131 NDFKG-QITSSIENLSHLTYLDLSSNHFSGQILNSIGNLSRLTYLNLFDNQFSGQAPSSI 189

Query:   183 EWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPXXXXXXXXXXXXXX 242
               LS L+FL+ +  N+   G+   +   +  L  LT L L                    
Sbjct:   190 CNLSHLTFLD-LSYNRF-FGQ---FPSSIGGLSHLTTLSL----FSNKFSGQIPSSIGNL 240

Query:   243 XXLAHLDLSLNDVSNSVYYWLFNXXXXXXXXXXXXNKLQGPIPDSAFPNPTSLSYLDLSN 302
               L  LDLS N+ S  +  ++ N            N   G IP S+F N   L+ L + +
Sbjct:   241 SNLTTLDLSNNNFSGQIPSFIGNLSQLTFLGLFS-NNFVGEIP-SSFGNLNQLTRLYVDD 298

Query:   303 NQLV-SVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNC----SRD------------ 345
             N+L  + P    NL  L  L   +N  T  LP     LSN     + D            
Sbjct:   299 NKLSGNFPNVLLNLTGLSLLSLSNNKFTGTLPPNITSLSNLMDFDASDNAFTGTFPSFLF 358

Query:   346 ---TLEILQLNSNMLRGSLPDITLFSSLKE-LHLYDNMLDVLYLNNNRFTGTLTKSIGQL 401
                +L  ++LN N L+G+L     F ++    +LY+  LD+    NN F G +  SI +L
Sbjct:   359 TIPSLTYIRLNGNQLKGTLE----FGNISSPSNLYE--LDI---GNNNFIGPIPSSISKL 409

Query:   402 SQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGAC 461
              +L  LD++  + +G +  +  S+L  L  L++SH +        +  S+   ++ L   
Sbjct:   410 VKLFRLDISHLNTQGPVDFSIFSHLKSLLDLNISHLNTTTRIDLNYFLSYFKRLLLLDLS 469

Query:   462 KQGPQFPKWLQTQNKFSELD----VSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLP 517
                          +  S+L     +S   I++  P  F      L +L++S+N   G +P
Sbjct:   470 GNHVSATNKSSVSDPPSQLIQSLYLSGCGITE-FPE-FVRTQHELGFLDISNNKIKGQVP 527

Query:   518 DLSQKFTAYPPEIDLSANS---FEGPIPPIPLTVTSLILFKNMFSGSL-SFLCQISDEHF 573
             D   +       ++LS N+   F+ P  P P ++  L+   N F G + SF+C +     
Sbjct:   528 DWLWRLPILY-YVNLSNNTLIGFQRPSKPEP-SLLYLLGSNNNFIGKIPSFICGLRS--L 583

Query:   574 RYLDLSDNLLSGELPNCSKNWQK-LTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFI 632
               LDLSDN  +G +P C  + +  L+VLNL  N  SG +P  + F  ++ SL + +N  +
Sbjct:   584 NTLDLSDNNFNGSIPRCMGHLKSTLSVLNLRQNHLSGGLPKQI-FE-ILRSLDVGHNQLV 641

Query:   633 GELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQ 692
             G+LP S+  F+ L VL++  N+I+   P W+  SLP L VL LRSN FHG  P+      
Sbjct:   642 GKLPRSLSFFSTLEVLNVESNRINDTFPFWLS-SLPKLQVLVLRSNAFHG--PIHEATFP 698

Query:   693 RIQVLDLSQNNISGTVP-QCLNNLTAMTA-NKSSN-AMIRYPLRTDYYNDHALLVWKRKD 749
              ++++D+S N  +GT+P +     +AM++  K+ + +  +Y     YY D  +L+ K   
Sbjct:   699 ELRIIDISHNRFNGTLPTEYFVKWSAMSSLGKNEDQSNEKYMGSGLYYQDSMVLMNKGVA 758

Query:   750 SEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVG-LISLNLSKNSLTGPIPSKIGGLTLLNS 808
              E    L +  ++D S NR  GEIP+   L+  L+ L+LS N+ +G +PS +G LT L S
Sbjct:   759 MELVRILTIYTAVDFSGNRFEGEIPKSIGLLKELLVLSLSNNAFSGHMPSSMGNLTALES 818

Query:   809 LDLSKNML 816
             LD+SKN L
Sbjct:   819 LDVSKNKL 826

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 245/800 (30%), Positives = 382/800 (47%)

Query:    57 IDEYGHLSSWGNEDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQH 116
             I+ +    SWGN  D   CC W GV+C+ ++G V  LNL   S +  R + +SS+  L  
Sbjct:     4 IESHRKTESWGNNSD---CCNWEGVTCNAKSGEVIELNLSCSS-LHGRFHSNSSIRNLHF 59

Query:   117 LNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFN-F 175
             L  L+  +NDF G QI + I +L ++  LDLS   F+G++   +GNL+ L  LDLSFN F
Sbjct:    60 LTTLDRSHNDFEG-QITSSIENLSHLTSLDLSYNRFSGQILNSIGNLSRLTSLDLSFNQF 118

Query:   176 D-MLSKKLEWLSQLSFLEYVR---LNQV-----NLGEAT----DWLQVVSQLPSLTELQL 222
                +   +  LS L+FL         Q+     NL   T       +   Q PS      
Sbjct:   119 SGQIPSSIGNLSHLTFLGLSGNRFFGQIPSSIGNLSHLTFLGLSGNRFFGQFPSSIGGLS 178

Query:   223 RGCNLPXXXXXXXXXXXXXXXXLAHLD---LSLNDVSNSVYYWLFNXXXXXXXXXXXXNK 279
                NL                 L+ L    LS+N+    +    F             NK
Sbjct:   179 NLTNLHLSYNKYSGQIPSSIGNLSQLIVLYLSVNNFYGEIPS-SFGNLNQLTRLDVSFNK 237

Query:   280 LQGPIPDSAFPNPTSLSYLDLSNNQLV-SVPKSFRNLCRLRALYQDSNNLTDLLPNLFLK 338
             L G  P+    N T LS + LSNN+   ++P +  +L  L A Y   N  T   P+ FL 
Sbjct:   238 LGGNFPNVLL-NLTGLSVVSLSNNKFTGTLPPNITSLSNLMAFYASDNAFTGTFPS-FLF 295

Query:   339 LSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSI 398
             +      +L  L L+ N L+G+L     F ++       + L  L + +N F G +  SI
Sbjct:   296 II----PSLTYLGLSGNQLKGTLE----FGNISS----PSNLQYLNIGSNNFIGPIPSSI 343

Query:   399 GQLSQLELLDVASNSLKGMITE----AHLSNLS--RLTYLD---LSHNSLILNFGSGWVP 449
              +L  L+ L ++  + +    +    +HL +L   RL+YL    +  N ++  F +  + 
Sbjct:   344 SKLINLQELGISHLNTQCRPVDFSIFSHLKSLDDLRLSYLTTTTIDLNDILPYFKT--LR 401

Query:   450 SFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSH 509
             S +L+   + A  +                L +S   I+D  P         L +L++S+
Sbjct:   402 SLDLSGNLVSATNKSSVSSD--PPSQSIQSLYLSGCGITD-FPE-ILRTQHELGFLDVSN 457

Query:   510 NHFTGMLPD----LSQKFTAYPPEIDLSANSFEG---PIPPIPLTVTSLILFKNMFSGSL 562
             N   G +P     L   F  Y   ++LS N+F G   P  P P ++  L+   N F+G +
Sbjct:   458 NKIKGQVPGWLWTLPNLF--Y---LNLSNNTFIGFQRPTKPEP-SMAYLLGSNNNFTGKI 511

Query:   563 -SFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQK-LTVLNLANNKFSGKIPDSMDFNCM 620
              SF+C++   +   LDLSDN  SG +P C +N +  L+ LNL  N  SG  P+ + F  +
Sbjct:   512 PSFICELRSLYT--LDLSDNNFSGSIPRCMENLKSNLSELNLRQNNLSGGFPEHI-FESL 568

Query:   621 MLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNF 680
               SL + +N  +G+LP S++ F+ L VL++  N+I+ + P W+  SL  L VL LRSN F
Sbjct:   569 R-SLDVGHNQLVGKLPRSLRFFSNLEVLNVESNRINDMFPFWLS-SLQKLQVLVLRSNAF 626

Query:   681 HGRVPVQVCHLQRIQVLDLSQNNISGTVP-QCLNNLTAMTA--NKSSNAMIRYPLRTDYY 737
             HG  P+      +++++D+S N+ +G++P +     + M++       + + Y L + YY
Sbjct:   627 HG--PINQALFPKLRIIDISHNHFNGSLPTEYFVEWSRMSSLGTYEDGSNVNY-LGSGYY 683

Query:   738 NDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVG-LISLNLSKNSLTGPI 796
              D  +L+ K  +SE    L +  ++D S N+  GEIP+   L+  L  LNLS N+ TG I
Sbjct:   684 QDSMVLMNKGVESELVRILTIYTAVDFSGNKFEGEIPKSIGLLKELHVLNLSNNAFTGHI 743

Query:   797 PSKIGGLTLLNSLDLSKNML 816
             PS IG LT L SLD+S+N L
Sbjct:   744 PSSIGNLTALESLDVSQNKL 763

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 680 (244.4 bits), Expect = 1.2e-66, P = 1.2e-66
 Identities = 247/771 (32%), Positives = 374/771 (48%)

Query:    89 HVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLS 148
             ++T L+L  R++    G I SS+  L HL +++  +N+F G QIP+ +G L ++   +LS
Sbjct:   137 NLTTLDLS-RNHFS--GRIPSSIGNLSHLIFVDFSHNNFSG-QIPSSLGYLSHLTSFNLS 192

Query:   149 NAGFTGRVPYQLGNLTSLQYLDLSFN--FDMLSKKLEWLSQLSFLEYVRLNQVNLGEATD 206
                F+GRVP  +GNL+ L  L LS N  F  L   L  L  L+ L  +  N   +G+   
Sbjct:   193 YNNFSGRVPSSIGNLSYLTTLRLSRNSFFGELPSSLGSLFHLTDL-ILDTNHF-VGKIPS 250

Query:   207 WLQVVSQLPSLTELQLRGCNLPXXXXXXXXXXXXXXXXLAHLDLSLNDVSNSVYYWLFNX 266
              L     L  LT + L   N                  L    LS N++   +    F  
Sbjct:   251 SL---GNLSHLTSIDLHKNNF----VGEIPFSLGNLSCLTSFILSDNNIVGEIPS-SFGN 302

Query:   267 XXXXXXXXXXXNKLQGPIPDSAFPNPTSLSYLDLSNNQLV-SVPKSFRNLCRLRALYQDS 325
                        NKL G  P  A  N   LS L L NN+L  ++P +  +L  L+      
Sbjct:   303 LNQLDILNVKSNKLSGSFP-IALLNLRKLSTLSLFNNRLTGTLPSNMSSLSNLKLFDATE 361

Query:   326 NNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYL 385
             N+ T  LP+    + +    TLE     +N L GSL     F ++     Y N L VL L
Sbjct:   362 NHFTGPLPSSLFNIPSLKTITLE-----NNQLNGSLG----FGNISS---YSN-LTVLRL 408

Query:   386 NNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSH-NS------ 438
              NN F G + +SI +L  L+ LD+++ + +G++     S+L  + YL+LSH N+      
Sbjct:   409 GNNNFRGPIHRSISKLVNLKELDLSNYNTQGLVDFTIFSHLKSIEYLNLSHLNTTTTIDM 468

Query:   439 --LILNF---------GS-------GWVPSFELNIIR---LGACKQGPQFPKWLQTQNKF 477
               ++ +F         GS         + +  L +I    L  C    +FPK+L++Q   
Sbjct:   469 YEILSSFKLLDTLDLSGSHVSTTNKSSLSNSSLVLISQLYLSGCGI-TEFPKFLRSQELM 527

Query:   478 SELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSF 537
               LD+S  +I   VP W W L P L Y+NLS+N F G   + S K         L   S 
Sbjct:   528 LTLDISNNKIKGQVPGWLWML-PVLNYVNLSNNTFIGF--ERSTK---------LGLTSI 575

Query:   538 EGPIPPIPLTVTSLILFKNMFSGSL-SFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQK 596
             + P P     +  L    N F+G++ SF+C++   +   LD S+N  +G +P C  N Q 
Sbjct:   576 QEP-P----AMRQLFCSNNNFTGNIPSFICELP--YLSTLDFSNNKFNGSIPTCMGNIQS 628

Query:   597 --LTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNK 654
               L  LNL +N+ SG +P+++ F  + +SL + +N  +G+LP S+   + L +L++  NK
Sbjct:   629 PYLQALNLRHNRLSGLLPENI-FESL-ISLDVGHNQLVGKLPRSLSHISSLGLLNVESNK 686

Query:   655 ISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVP-QCLN 713
             IS   P W+  SL +L VL LRSN F+G  P++     +++++D+S N  +GT+P     
Sbjct:   687 ISDTFPLWLS-SLQELQVLVLRSNAFYG--PIEKTQFSKLRIIDISGNQFNGTLPANFFV 743

Query:   714 NLTAMTA---NKS-SNA--MIRYPLRTDY-YNDHALLVWKRKDSEYRNTLGLVKSIDLSS 766
             N TAM +   N+  SN   M    + TDY Y D  +L+ K  + E    L +   ID S 
Sbjct:   744 NWTAMFSLDENEDQSNGETMSNMYMSTDYFYFDSMVLMNKGVEMELERVLKVFTVIDFSG 803

Query:   767 NRLYGEIPEVTSLVG-LISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
             N+  GEIP+   L+  L  LNLS N+L+G I S +G L  L SLD+S+N L
Sbjct:   804 NKFEGEIPKSIGLLKELHVLNLSNNALSGHIASSMGNLMALESLDVSQNKL 854

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 614 (221.2 bits), Expect = 1.5e-65, Sum P(2) = 1.5e-65
 Identities = 236/784 (30%), Positives = 370/784 (47%)

Query:    65 SWGNEDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKY 124
             SW N  D   CC W G++C  ++G V  L+L   S++    + +SSL  LQ+L  L++  
Sbjct:    79 SWRNNSD---CCNWEGITCDTKSGEVIELDLSC-SWLYGSFHSNSSLFRLQNLRVLDLTQ 134

Query:   125 NDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFN-FD-MLSKKL 182
             ND  G +IP+ IG+L ++  L LS   F G +P  + NL+ L  L LS N F   +   +
Sbjct:   135 NDLDG-EIPSSIGNLSHLTSLHLSYNQFLGLIPSSIENLSRLTSLHLSSNQFSGQIPSSI 193

Query:   183 EWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPXXXXXXXX-XXXXX 241
               LS L+ LE +  NQ + G      Q+ S + +L+ L     +LP              
Sbjct:   194 GNLSHLTSLE-LSSNQFS-G------QIPSSIGNLSNLTF--LSLPSNDFFGQIPSSIGN 243

Query:   242 XXXLAHLDLSLNDVSNSVYYWLFNXXXXXXXXXXXXNKLQGPIPDSAFPNPTSLSYLDLS 301
                L +L LS N+    +    F             NKL G +P S   N T LS L LS
Sbjct:   244 LARLTYLYLSYNNFVGEIPS-SFGNLNQLIVLQVDSNKLSGNVPISLL-NLTRLSALLLS 301

Query:   302 NNQLV-SVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGS 360
             +NQ   ++P +   L  L      +N  T  LP+    +    R     L L+ N L G+
Sbjct:   302 HNQFTGTIPNNISLLSNLMDFEASNNAFTGTLPSSLFNIPPLIR-----LDLSDNQLNGT 356

Query:   361 LPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITE 420
             L     F ++       + L  L + +N F GT+ +S+ +   L L D++  + +    +
Sbjct:   357 LH----FGNISS----PSNLQYLIIGSNNFIGTIPRSLSRFVNLTLFDLSHLNTQCRPVD 408

Query:   421 ----AHLSNLS--RLTYLD---LSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWL 471
                 +HL +L   RL+YL    +  N ++  F +  + S +++   + A  +        
Sbjct:   409 FSIFSHLKSLDDLRLSYLTTTTIDLNDILPYFKT--LRSLDISGNLVSATNKSSVSSD-- 464

Query:   472 QTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPD----LSQKFTAYP 527
                     L +S   I+D  P         L +L++S+N   G +P     L   F  Y 
Sbjct:   465 PPSQSIQSLYLSGCGITD-FPE-ILRTQHELGFLDVSNNKIKGQVPGWLWTLPNLF--Y- 519

Query:   528 PEIDLSAN---SFEGPIPPIPLTVT---SLI-LF--KNMFSGSL-SFLCQISDEHFRYLD 577
               ++LS N   SFE       L+     S+I LF   N F+G + SF+C +       LD
Sbjct:   520 --LNLSNNTFISFESSSKKHGLSSVRKPSMIHLFASNNNFTGKIPSFICGLRS--LNTLD 575

Query:   578 LSDNLLSGELPNCSKNWQK-LTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELP 636
             LS+N  +G +P C +  +  L VLNL  N  SG +P  + F  +  SL + +N  +G+LP
Sbjct:   576 LSENNYNGSIPRCMEKLKSTLFVLNLRQNNLSGGLPKHI-FESLR-SLDVGHNLLVGKLP 633

Query:   637 SSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQV 696
              S+  F+ L VL++  N+I+   P W+  SL  L VL LRSN FHG  P+       +++
Sbjct:   634 RSLIRFSNLEVLNVESNRINDTFPFWLS-SLSKLQVLVLRSNAFHG--PIHEATFPELRI 690

Query:   697 LDLSQNNISGTVP-QCLNNLTAMTA-NKSSN-AMIRYPLRTDYYNDHALLVWKRKDSEYR 753
             +D+S N+ +GT+P +     +AM++  K+ + +  +Y     YY D  +L+ K    E  
Sbjct:   691 IDISHNHFNGTLPTEYFVKWSAMSSLGKNEDQSNEKYMGSGLYYQDSMVLMNKGLAMELV 750

Query:   754 NTLGLVKSIDLSSNRLYGEIPEVTSLVG-LISLNLSKNSLTGPIPSKIGGLTLLNSLDLS 812
               L +  ++D S N+  GEIP+   L+  L+ LNLS N+  G IPS +G LT L SLD+S
Sbjct:   751 RILTIYTALDFSGNKFEGEIPKSIGLLKELLVLNLSNNAFGGHIPSSMGNLTALESLDVS 810

Query:   813 KNML 816
             +N L
Sbjct:   811 QNKL 814

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046357 RLP23 "receptor like protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 578 (208.5 bits), Expect = 9.8e-65, Sum P(2) = 9.8e-65
 Identities = 200/691 (28%), Positives = 319/691 (46%)

Query:   142 IRHLDLSNAGFTGR-VPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVN 200
             +R++DL N   T   +P   GNL  L+ L LS N   L +     S L+ L  + L+   
Sbjct:   100 LRYVDLQNNNLTSSSLPSGFGNLKRLEGLFLSSN-GFLGQVPSSFSNLTMLAQLDLSYNK 158

Query:   201 LGEATDWLQVVSQLPSLTELQLRGCNLPXXXXXXXXXXXXXXXXLAHLDLSLNDVSNSVY 260
             L   T    +V  L  L  L L   +                  L +L+L+ N+ S+S+ 
Sbjct:   159 L---TGSFPLVRGLRKLIVLDLSYNHF--SGTLNPNSSLFELHQLRYLNLAFNNFSSSLP 213

Query:   261 YWLFNXXXXXXXXXXXXNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRA 320
                F             N   G +P S   N T L+ L L  N+L S     +NL  L  
Sbjct:   214 S-KFGNLHRLENLILSSNGFSGQVP-STISNLTRLTKLYLDQNKLTSSFPLVQNLTNLYE 271

Query:   321 LYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNML 380
             L    N    ++P+  L L       L  L L  N L GS+ +++  S+        + L
Sbjct:   272 LDLSYNKFFGVIPSSLLTLP-----FLAHLALRENNLAGSV-EVSNSST-------SSRL 318

Query:   381 DVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLI 440
             +++YL +N F G + + I +L  L+ LD++  +    I     S+L  L  LDLS NS+ 
Sbjct:   319 EIMYLGSNHFEGQILEPISKLINLKHLDLSFLNTSYPIDLKLFSSLKSLRSLDLSGNSIS 378

Query:   441 -LNFGS-GWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDL 498
               +  S  ++P   L ++ L  C    +FP  L+T  +   +D+S   +   +P W W L
Sbjct:   379 SASLSSDSYIP-LTLEMLTLRHCDIN-EFPNILKTLKELVYIDISNNRMKGKIPEWLWSL 436

Query:   499 SPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMF 558
              P L  + L +N+FTG          +    + L +N+FEG +P +PL++    +  N F
Sbjct:   437 -PLLQSVTLGNNYFTGFQGSAEILVNSSVLLLYLDSNNFEGALPDLPLSIKGFGVASNSF 495

Query:   559 SGSLSF-LCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDF 617
             +  +   +C  S      +DLS N  +G +P C +N   L ++ L NN   G IPD++  
Sbjct:   496 TSEIPLSICNRSS--LAAIDLSYNNFTGPIPPCLRN---LELVYLRNNNLEGSIPDALCD 550

Query:   618 NCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRS 677
                + +L + +N   G+LP S  + + L  L + +N+I    P W+  +LP+L VL+LRS
Sbjct:   551 GASLRTLDVSHNRLTGKLPRSFVNCSSLKFLSVINNRIEDTFPFWL-KALPNLQVLTLRS 609

Query:   678 NNFHGRV--PVQ-VCHLQRIQVLDLSQNNISGTVPQ--CLN-NLTAMTANKSSNAMIRYP 731
             N F+G +  P Q       +++ ++S N  +G++P    +N   ++ T N+     + Y 
Sbjct:   610 NRFYGPISPPHQGPLGFPELRIFEISDNKFTGSLPPNYFVNWKASSRTMNQDGGLYMVYE 669

Query:   732 LRT----DY-YNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLV-GLISL 785
              +      Y Y D   L +K    E    L    +ID S NRL G+IPE   L+  LI++
Sbjct:   670 EKLFDEGGYGYTDALDLQYKGLHMEQAKALTSYAAIDFSGNRLEGQIPESIGLLKALIAV 729

Query:   786 NLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
             N+S N+ TG IP  +  L  L SLD+S+N L
Sbjct:   730 NISNNAFTGHIPLSMANLENLESLDMSRNQL 760

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 186/584 (31%), Positives = 282/584 (48%)

Query:   245 LAHLDLSLNDVSNSVYYWLFNXXXXXXXXXXXXNKLQGPIPDSAFPNPTSLSYLDLSNNQ 304
             L +L+LS N+ +++     F             N   G +P S+F N + L+ LDLS+N+
Sbjct:    99 LRYLNLSNNNFTSASLPSGFGNLNRLEVLYLSSNGFLGQVP-SSFSNLSQLNILDLSHNE 157

Query:   305 LVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDI 364
             L       +NL +L  L    N+ +  +P+  L L       L  L L  N L GS+   
Sbjct:   158 LTGSFPFVQNLTKLSILVLSYNHFSGTIPSSLLTLP-----FLSSLDLRENYLTGSIEAP 212

Query:   365 TLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLS 424
                +S +        L+ +YL NN F G + + I +L  L+ LD++       I     S
Sbjct:   213 NSSTSSR--------LEFMYLGNNHFEGQILEPISKLINLKHLDLSFLKTSYPIDLNLFS 264

Query:   425 NLSRLTYLDLSHNSLILNF--GSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDV 482
             +   L  L LS NSL+         +P    N++ L +C    +FP  L+   K   +D+
Sbjct:   265 SFKSLVRLVLSGNSLLATSITSDSKIPLNLENLVLL-SCGL-IEFPTILKNLTKLEHIDL 322

Query:   483 SAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIP 542
             S  +I   VP WFW+L P L  +NL +N FT +         +    +DL+ N F GP P
Sbjct:   323 SNNKIKGKVPEWFWNL-PRLRRVNLFNNLFTDLEGSEEVLVNSSVRLLDLAYNHFRGPFP 381

Query:   543 PIPLTVTSLILFKNMFSGSLSF-LCQISDEHFRYLDLSDNLLSGELPNCSKNWQK-LTVL 600
               PL++  L  + N F+G++    C  S      LDLS N L+G +P C  ++Q+ L V+
Sbjct:   382 KPPLSINLLSAWNNSFTGNIPLETCNRSS--LAILDLSYNNLTGPIPRCLSDFQESLIVV 439

Query:   601 NLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIP 660
             NL  N   G +PD      ++ +L +  N   G+LP S+ + + L  + + HNKI    P
Sbjct:   440 NLRKNNLEGSLPDIFSDGALLRTLDVGYNQLTGKLPRSLLNCSMLRFVSVDHNKIKDTFP 499

Query:   661 AWIGDSLPDLVVLSLRSNNFHGRV-PVQVCHLQ--RIQVLDLSQNNISGTVP-QCLNNLT 716
              W+  +LPDL  L+LRSN FHG + P     L   ++++L++S NN +G++P     N  
Sbjct:   500 FWL-KALPDLQALTLRSNKFHGPISPPDRGPLAFPKLRILEISDNNFTGSLPPNYFVNWE 558

Query:   717 AMTANKSSNAMIRY-PLRTDYY--NDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEI 773
             A +   + +  I        YY   D   L +K    E    L    +ID S N+L G+I
Sbjct:   559 ASSLQMNEDGRIYMGDYNNPYYIYEDTVDLQYKGLFMEQGKVLTSYATIDFSGNKLEGQI 618

Query:   774 PEVTSLV-GLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
             PE   L+  LI+LNLS N+ TG IP  +  +T L SLDLS+N L
Sbjct:   619 PESIGLLKALIALNLSNNAFTGHIPLSLANVTELESLDLSRNQL 662

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 598 (215.6 bits), Expect = 3.1e-57, P = 3.1e-57
 Identities = 225/716 (31%), Positives = 325/716 (45%)

Query:    43 ERERQALLMFKQGLIDEYGHLSSWGNEDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSYMP 102
             + E  AL  FK  L D  G L+SW        C  WRGV C+N    VT + L     + 
Sbjct:    26 QAEIDALTAFKLNLHDPLGALTSWDPSTPAAPC-DWRGVGCTNH--RVTEIRLP---RLQ 79

Query:   103 LRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGN 162
             L G IS  + GL+ L  L+++ N F G  IP  +     +  + L     +G++P  + N
Sbjct:    80 LSGRISDRISGLRMLRKLSLRSNSFNGT-IPTSLAYCTRLLSVFLQYNSLSGKLPPAMRN 138

Query:   163 LTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQL 222
             LTSL+  +++ N   LS ++  +   S L+++ ++           Q+ S L +LT+LQL
Sbjct:   139 LTSLEVFNVAGN--RLSGEIP-VGLPSSLQFLDISSNTFSG-----QIPSGLANLTQLQL 190

Query:   223 RGCNLPXXXXXXXX-XXXXXXXXLAHLDLSLNDVSNSVYYWLFNXXXXXXXXXXXXNKLQ 281
                NL                  L +L L  N +  ++   + N            N++ 
Sbjct:   191 --LNLSYNQLTGEIPASLGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASE-NEIG 247

Query:   282 GPIPDSAFPNPTSLSYLDLSNNQLV-SVPKSFRNLCRLRALYQDSNNLTDLL-PNLFLKL 339
             G IP +A+     L  L LSNN    +VP S      L  +    N  +D++ P      
Sbjct:   248 GVIP-AAYGALPKLEVLSLSNNNFSGTVPFSLFCNTSLTIVQLGFNAFSDIVRPET---T 303

Query:   340 SNCSRDTLEILQLNSNMLRGSLPD-ITLFSSLKELHLYDNM--------------LDVLY 384
             +NC R  L++L L  N + G  P  +T   SLK L +  N+              L+ L 
Sbjct:   304 ANC-RTGLQVLDLQENRISGRFPLWLTNILSLKNLDVSGNLFSGEIPPDIGNLKRLEELK 362

Query:   385 LNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFG 444
             L NN  TG +   I Q   L++LD   NSLKG I E  L  +  L  L L  NS      
Sbjct:   363 LANNSLTGEIPVEIKQCGSLDVLDFEGNSLKGQIPE-FLGYMKALKVLSLGRNSF----- 416

Query:   445 SGWVPSFELNI-----IRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLS 499
             SG+VPS  +N+     + LG       FP  L      SELD+S    S  VP    +LS
Sbjct:   417 SGYVPSSMVNLQQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISNLS 476

Query:   500 PNLYYLNLSHNHFTGMLP-DLSQKFTAYPPEIDLSANSFEGPIPP----IPLTVTSLILF 554
              NL +LNLS N F+G +P  +   F      +DLS  +  G +P     +P  V  + L 
Sbjct:   477 -NLSFLNLSGNGFSGEIPASVGNLFKL--TALDLSKQNMSGEVPVELSGLP-NVQVIALQ 532

Query:   555 KNMFSGSL--SFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIP 612
              N FSG +   F   +S    RY++LS N  SGE+P      + L  L+L++N  SG IP
Sbjct:   533 GNNFSGVVPEGFSSLVS---LRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIP 589

Query:   613 DSMDFNCMMLS-LHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLV 671
               +  NC  L  L LR+N  +G +P+ +    +L VLDLG N +SG IP  I  S   L 
Sbjct:   590 PEIG-NCSALEVLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQS-SSLN 647

Query:   672 VLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTA--NKSSN 725
              LSL  N+  G +P     L  +  +DLS NN++G +P  L  +++     N SSN
Sbjct:   648 SLSLDHNHLSGVIPGSFSGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSN 703

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 543 (196.2 bits), Expect = 8.6e-56, Sum P(2) = 8.6e-56
 Identities = 199/670 (29%), Positives = 310/670 (46%)

Query:   162 NLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQ 221
             N  S Q + L      L+  L+  S L  L+Y+R   ++L     + ++ S L +L+ L 
Sbjct:    80 NDKSGQVISLDIPNTFLNNYLKTNSSLFKLQYLR--HLDLTNCNLYGEIPSSLGNLSHLT 137

Query:   222 LRGCNLPXXXXXXXX-XXXXXXXXLAHLDLSLNDVSNSVYYWLFNXXXXXXXXXXXXNKL 280
             L   NL                  L HL L+ N ++  +   L N            N+L
Sbjct:   138 L--VNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELFS-NRL 194

Query:   281 QGPIPDSAFPNPTSLSYLDLSNNQLVS-VPKSFRNLCRLRALYQDSNNLTDLLPNLFLKL 339
              G IPDS   +   L  L L++N L+  +P S  NL  L  L    N L   +P     +
Sbjct:   195 VGKIPDS-IGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVP---ASI 250

Query:   340 SNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIG 399
              N     L ++   +N L G++P I+ F++L +L ++        L++N FT T    + 
Sbjct:   251 GNLIE--LRVMSFENNSLSGNIP-IS-FANLTKLSIF-------VLSSNNFTSTFPFDMS 299

Query:   400 QLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLI--LNFGSGWVPSFELNIIR 457
                 LE  DV+ NS  G   ++ L  +  L  + L  N     + F +    S +L  + 
Sbjct:   300 IFHNLEYFDVSYNSFSGPFPKSLLL-IPSLESIYLQENQFTGPIEFANT-SSSTKLQDLI 357

Query:   458 LGACK-QGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGML 516
             LG  +  GP  P+ +       ELD+S    +  +P     L  NL +L+LS N+  G +
Sbjct:   358 LGRNRLHGP-IPESISRLLNLEELDISHNNFTGAIPPTISKLV-NLLHLDLSKNNLEGEV 415

Query:   517 PDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFL-CQISDEHFRY 575
             P    +        + S +SFE       L +  L L  N F G + ++ C++S   F  
Sbjct:   416 PACLWRLNTMVLSHN-SFSSFENTSQEEAL-IEELDLNSNSFQGPIPYMICKLSSLGF-- 471

Query:   576 LDLSDNLLSGELPNCSKNWQ-KLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGE 634
             LDLS+NL SG +P+C +N+   +  LNL +N FSG +PD       ++SL + +N   G+
Sbjct:   472 LDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGK 531

Query:   635 LPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCH---- 690
              P S+ +   L ++++  NKI  I P+W+ +SLP L VL+LRSN F+G  P+   H    
Sbjct:   532 FPKSLINCKALELVNVESNKIKDIFPSWL-ESLPSLHVLNLRSNKFYG--PLYHRHASIG 588

Query:   691 LQRIQVLDLSQNNISGTVPQC-LNNLTAMTA--NKSSNAMIRYPLRTDYYNDHALLVWKR 747
              Q ++++D+S NN SGT+P    +N   MT    +    M  +    D Y     +V K 
Sbjct:   589 FQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTEFWRYADSYYHEMEMVNKG 648

Query:   748 KDSEYRNTLGLVKSIDLSSNRLYGEIPEVTS-LVGLISLNLSKNSLTGPIPSKIGGLTLL 806
              D  +       ++ID S N++ G IPE    L  L  LNLS N+ T  IP  +  LT L
Sbjct:   649 VDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKL 708

Query:   807 NSLDLSKNML 816
              +LD+S+N L
Sbjct:   709 ETLDISRNKL 718

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
 Identities = 163/543 (30%), Positives = 259/543 (47%)

Query:   291 NPTSLSYLDLSNNQLVSV-PKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEI 349
             N +SL+ +DLS+NQ  ++ P +  +L +L A     N+ +  +P+    L +  +     
Sbjct:   285 NLSSLTNVDLSSNQFKAMLPSNMSSLSKLEAFDISGNSFSGTIPSSLFMLPSLIK----- 339

Query:   350 LQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDV 409
             L L +N   G L  I   SS        + L  LY+  N   G + +SI +L  L  L +
Sbjct:   340 LDLGTNDFSGPLK-IGNISS-------PSNLQELYIGENNINGPIPRSILKLVGLSALSL 391

Query:   410 ASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPK 469
             +     G++  +    L  L  LDLS  +L ++  S  +PS  +++I L +C    QFPK
Sbjct:   392 SFWDTGGIVDFSIFLQLKSLRSLDLSGINLNIS-SSHHLPSHMMHLI-LSSCNIS-QFPK 448

Query:   470 WLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTG---MLPDLSQKFTAY 526
             +L+ Q     LD+SA +I   VP W W L P L Y+N++ N F+G   MLP+    F A 
Sbjct:   449 FLENQTSLYHLDISANQIEGQVPEWLWRL-PTLRYVNIAQNAFSGELTMLPNPIYSFIA- 506

Query:   527 PPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGE 586
                   S N F G IP     + +L+L  N FSGS+    +IS++    L L +N LSG 
Sbjct:   507 ------SDNKFSGEIPRAVCEIGTLVLSNNNFSGSIPPCFEISNKTLSILHLRNNSLSGV 560

Query:   587 LPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLS-LHLRNNSFIGELPSSVKSFTQL 645
             +P  S +   L  L++ +N+ SG+ P S+  NC  L  L++  N      PS +KS   L
Sbjct:   561 IPEESLHGY-LRSLDVGSNRLSGQFPKSL-INCSYLQFLNVEENRINDTFPSWLKSLPNL 618

Query:   646 TVLDLGHNKISGIIPAWIGDSLP--DLVVLSLRSNNFHGRVPVQ--VCHLQRIQVLDLSQ 701
              +L L  N+  G I +  GDSL    L    +  N F G +P    V        +D+  
Sbjct:   619 QLLVLRSNEFHGPIFS-PGDSLSFSKLRFFDISENRFSGVLPSDYFVGWSVMSSFVDIID 677

Query:   702 NNISGTV----PQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLG 757
             N    TV     +  +    +T    +  ++          D   +   R + +   ++G
Sbjct:   678 NTPGFTVVGDDQESFHKSVVLTIKGLNMELVGSGFEIYKTID---VSGNRLEGDIPESIG 734

Query:   758 LVKSI---DLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSK 813
             ++K +   ++S+N   G IP  +++L  L SL+LS+N L+G IP ++G LT L  ++ S 
Sbjct:   735 ILKELIVLNMSNNAFTGHIPPSLSNLSNLQSLDLSQNRLSGSIPGELGELTFLARMNFSY 794

Query:   814 NML 816
             NML
Sbjct:   795 NML 797

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	820
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-56
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-48
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-43
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-07
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  208 bits (530), Expect = 4e-56
 Identities = 202/674 (29%), Positives = 313/674 (46%), Gaps = 148/674 (21%)

Query: 45  ERQALLMFKQGLIDEYGHLSSWGNEDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLR 104
           E + LL FK  + D   +LS+W   +   D C W+G++C+N +  V  ++L  ++   + 
Sbjct: 30  ELELLLSFKSSINDPLKYLSNW---NSSADVCLWQGITCNNSS-RVVSIDLSGKN---IS 82

Query: 105 GNISSSLIGLQH-------------------------LNYLNMKYNDFGGKQIPAFIGSL 139
           G ISS++  L +                         L YLN+  N+F G  IP   GS+
Sbjct: 83  GKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS-IPR--GSI 139

Query: 140 KNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQV 199
            N+  LDLSN   +G +P  +G+ +SL+ LDL  N  ++ K    L+ L+ LE++ L   
Sbjct: 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV-LVGKIPNSLTNLTSLEFLTL--- 195

Query: 200 NLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSV 259
               A++  Q+V Q+P   EL                      +SL  + L  N++S  +
Sbjct: 196 ----ASN--QLVGQIPR--EL-------------------GQMKSLKWIYLGYNNLSGEI 228

Query: 260 YYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLV-SVPKSFRNLCRL 318
            Y +    +SL +LDL  N L GPIP S+  N  +L YL L  N+L   +P S  +L +L
Sbjct: 229 PYEI-GGLTSLNHLDLVYNNLTGPIP-SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL 286

Query: 319 RALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDN 378
            +L    N+L+  +P L ++L N     LEIL L SN   G +P     +SL  L     
Sbjct: 287 ISLDLSDNSLSGEIPELVIQLQN-----LEILHLFSNNFTGKIP--VALTSLPRLQ---- 335

Query: 379 MLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNS 438
              VL L +N+F+G + K++G+ + L +LD+++N+L G I E  L +   L  L L  NS
Sbjct: 336 ---VLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG-LCSSGNLFKLILFSNS 391

Query: 439 LILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDL 498
           L      G +P        LGAC+                                    
Sbjct: 392 L-----EGEIPK------SLGACR------------------------------------ 404

Query: 499 SPNLYYLNLSHNHFTGMLPDLSQKFTAYPPE--IDLSANSFEGPIPPIPLTVTSL---IL 553
             +L  + L  N F+G   +L  +FT  P    +D+S N+ +G I      + SL    L
Sbjct: 405 --SLRRVRLQDNSFSG---ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL 459

Query: 554 FKNMFSGSL--SFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKI 611
            +N F G L  SF      +    LDLS N  SG +P    +  +L  L L+ NK SG+I
Sbjct: 460 ARNKFFGGLPDSF----GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI 515

Query: 612 PDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLV 671
           PD +     ++SL L +N   G++P+S      L+ LDL  N++SG IP  +G ++  LV
Sbjct: 516 PDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG-NVESLV 574

Query: 672 VLSLRSNNFHGRVP 685
            +++  N+ HG +P
Sbjct: 575 QVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  185 bits (472), Expect = 1e-48
 Identities = 184/604 (30%), Positives = 266/604 (44%), Gaps = 119/604 (19%)

Query: 217 LTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLS 276
           +  + L G N+   I+S+          +  ++LS N +S  +   +F +SSSL YL+LS
Sbjct: 71  VVSIDLSGKNISGKISSAIFRLP----YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 277 SNKLQGPIPDSAFPNPTSLSYLDLSNNQLV-SVPKSFRNLCRLRALYQDSNNLTDLLPNL 335
           +N   G IP  + PN   L  LDLSNN L   +P    +   L+ L    N L   +PN 
Sbjct: 127 NNNFTGSIPRGSIPN---LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183

Query: 336 FLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLT 395
              L+     +LE L L SN L G +P        +EL    + L  +YL  N  +G + 
Sbjct: 184 LTNLT-----SLEFLTLASNQLVGQIP--------RELGQMKS-LKWIYLGYNNLSGEIP 229

Query: 396 KSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNI 455
             IG L+ L  LD+  N+L G I  + L NL  L YL L  N L     SG         
Sbjct: 230 YEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKL-----SG--------- 274

Query: 456 IRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGM 515
                       P  + +  K   LD+S   +S  +P     L  NL  L+L  N+FTG 
Sbjct: 275 ----------PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ-NLEILHLFSNNFTGK 323

Query: 516 LPDLSQKFTAYP--PEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHF 573
           +P      T+ P    + L +N F G IP            KN+              + 
Sbjct: 324 IP---VALTSLPRLQVLQLWSNKFSGEIP------------KNLGK----------HNNL 358

Query: 574 RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIG 633
             LDLS N L+GE+P    +   L  L L +N   G+IP S+     +  + L++NSF G
Sbjct: 359 TVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG 418

Query: 634 ELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQR 693
           ELPS       +  LD+ +N + G I +   D +P L +LSL  N F G +P      +R
Sbjct: 419 ELPSEFTKLPLVYFLDISNNNLQGRINSRKWD-MPSLQMLSLARNKFFGGLP-DSFGSKR 476

Query: 694 IQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYR 753
           ++ LDLS+N  SG VP+ L +L+ +                                   
Sbjct: 477 LENLDLSRNQFSGAVPRKLGSLSELM---------------------------------- 502

Query: 754 NTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLS 812
                   + LS N+L GEIP E++S   L+SL+LS N L+G IP+    + +L+ LDLS
Sbjct: 503 -------QLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555

Query: 813 KNML 816
           +N L
Sbjct: 556 QNQL 559

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  170 bits (433), Expect = 1e-43
 Identities = 169/595 (28%), Positives = 260/595 (43%), Gaps = 132/595 (22%)

Query: 234 SSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYL---DLSSNKLQGPIPDSAFP 290
             ++ +NSSR +  +DLS  ++S  +   +F     L Y+   +LS+N+L GPIPD  F 
Sbjct: 61  QGITCNNSSR-VVSIDLSGKNISGKISSAIFR----LPYIQTINLSNNQLSGPIPDDIFT 115

Query: 291 NPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEIL 350
             +SL YL+LSNN                       N T  +P   +         LE L
Sbjct: 116 TSSSLRYLNLSNN-----------------------NFTGSIPRGSIPN-------LETL 145

Query: 351 QLNSNMLRGSLP-DITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDV 409
            L++NML G +P DI  FSSLK          VL L  N   G +  S+  L+ LE L +
Sbjct: 146 DLSNNMLSGEIPNDIGSFSSLK----------VLDLGGNVLVGKIPNSLTNLTSLEFLTL 195

Query: 410 ASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPK 469
           ASN L G I    L  +  L ++ L +N+L     SG                   + P 
Sbjct: 196 ASNQLVGQIP-RELGQMKSLKWIYLGYNNL-----SG-------------------EIPY 230

Query: 470 WLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLP----DLSQKFTA 525
            +      + LD+    ++  +P+   +L  NL YL L  N  +G +P     L +  + 
Sbjct: 231 EIGGLTSLNHLDLVYNNLTGPIPSSLGNLK-NLQYLFLYQNKLSGPIPPSIFSLQKLIS- 288

Query: 526 YPPEIDLSANSFEGPIPPIPLTVTSLI---LFKNMFSGSLSFLCQISDEHFRYLDLSDNL 582
               +DLS NS  G IP + + + +L    LF N F+G +  +   S    + L L  N 
Sbjct: 289 ----LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP-VALTSLPRLQVLQLWSNK 343

Query: 583 LSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSF 642
            SGE+P        LTVL+L+ N  +G+IP+ +  +  +  L L +NS  GE+P S+ + 
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403

Query: 643 TQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQN 702
             L  + L  N  SG +P+     LP +  L + +NN  GR+  +   +  +Q+L L++N
Sbjct: 404 RSLRRVRLQDNSFSGELPSEF-TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN 462

Query: 703 NISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSI 762
              G +P          +  S                                   ++++
Sbjct: 463 KFFGGLPD---------SFGSKR---------------------------------LENL 480

Query: 763 DLSSNRLYGEIPE-VTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
           DLS N+  G +P  + SL  L+ L LS+N L+G IP ++     L SLDLS N L
Sbjct: 481 DLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 4e-09
 Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 8/102 (7%)

Query: 78  WRGVSCS--NQTGH--VTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIP 133
           W G  C   +  G   +  L L  +    LRG I + +  L+HL  +N+  N   G  IP
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQG---LRGFIPNDISKLRHLQSINLSGNSIRG-NIP 459

Query: 134 AFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNF 175
             +GS+ ++  LDLS   F G +P  LG LTSL+ L+L+ N 
Sbjct: 460 PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.3 bits (141), Expect = 1e-08
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 624 LHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGR 683
           L L N    G +P+ +     L  ++L  N I G IP  +G S+  L VL L  N+F+G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGS 481

Query: 684 VPVQVCHLQRIQVLDLSQNNISGTVPQCL 712
           +P  +  L  +++L+L+ N++SG VP  L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.9 bits (140), Expect = 2e-08
 Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 25/113 (22%)

Query: 576 LDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGEL 635
           L L +  L G +PN     + L  +NL+ N                 S+        G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGN-----------------SIR-------GNI 458

Query: 636 PSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV 688
           P S+ S T L VLDL +N  +G IP  +G  L  L +L+L  N+  GRVP  +
Sbjct: 459 PPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 55.8 bits (135), Expect = 4e-08
 Identities = 67/259 (25%), Positives = 92/259 (35%), Gaps = 35/259 (13%)

Query: 206 DWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWL-- 263
              +++ +L  L  L+L G  L    A +  S      SL  L LSLN+           
Sbjct: 14  RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSL 73

Query: 264 ---FNSSSSLVYLDLSSNKLQ--GPIPDSAFPNPTSLSYLDLSNNQL--VSVPKSFRNL- 315
                    L  LDLS N L   G     +    +SL  L L+NN L    +    + L 
Sbjct: 74  LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK 133

Query: 316 ---CRLRALYQDSNNLTDL----LPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFS 368
                L  L    N L       L              L+ L L +N +  +     L  
Sbjct: 134 DLPPALEKLVLGRNRLEGASCEALAKALRANR-----DLKELNLANNGIGDAGI-RALAE 187

Query: 369 SLKELHLYDNMLDVLYLNNNRFT----GTLTKSIGQLSQLELLDVASNSL--KGMIT--E 420
            LK        L+VL LNNN  T      L +++  L  LE+L++  N+L   G      
Sbjct: 188 GLKANCN----LEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALAS 243

Query: 421 AHLSNLSRLTYLDLSHNSL 439
           A LS    L  L LS N +
Sbjct: 244 ALLSPNISLLTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 53.0 bits (127), Expect = 3e-07
 Identities = 67/199 (33%), Positives = 95/199 (47%), Gaps = 25/199 (12%)

Query: 244 SLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNN 303
           +L  LDL  N++++     +    S+L  LDLS NK++         N  +L  LDLS N
Sbjct: 117 NLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIESLPSPLR--NLPNLKNLDLSFN 173

Query: 304 QLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPD 363
            L  +PK   NL  L  L    N ++D LP     LS      LE L L++N +   +  
Sbjct: 174 DLSDLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSA-----LEELDLSNNSI---IEL 224

Query: 364 ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAH- 422
           ++  S+LK L         L L+NN+       SIG LS LE LD+++N     I+    
Sbjct: 225 LSSLSNLKNLSG-------LELSNNKLEDLPE-SIGNLSNLETLDLSNN----QISSISS 272

Query: 423 LSNLSRLTYLDLSHNSLIL 441
           L +L+ L  LDLS NSL  
Sbjct: 273 LGSLTNLRELDLSGNSLSN 291

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 4e-07
 Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 759 VKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
           ++SI+LS N + G IP  + S+  L  L+LS NS  G IP  +G LT L  L+L+ N L
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 4e-07
 Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 42/134 (31%)

Query: 673 LSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPL 732
           L L +    G +P  +  L+ +Q ++LS N+I G +P  L ++T++              
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLE------------- 469

Query: 733 RTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPE-VTSLVGLISLNLSKNS 791
                                        +DLS N   G IPE +  L  L  LNL+ NS
Sbjct: 470 ----------------------------VLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501

Query: 792 LTGPIPSKIGGLTL 805
           L+G +P+ +GG  L
Sbjct: 502 LSGRVPAALGGRLL 515

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 45 ERQALLMFKQGLIDEY-GHLSSWGNEDDKKDCCKWRGVSCS 84
          +R ALL FK  L  +  G LSSW       D C W GV+C 
Sbjct: 4  DRDALLAFKSSLNGDPSGALSSWNPSSS--DPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 2e-06
 Identities = 22/69 (31%), Positives = 39/69 (56%)

Query: 571 EHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNS 630
            H + ++LS N + G +P    +   L VL+L+ N F+G IP+S+     +  L+L  NS
Sbjct: 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501

Query: 631 FIGELPSSV 639
             G +P+++
Sbjct: 502 LSGRVPAAL 510

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.8 bits (107), Expect = 3e-06
 Identities = 29/61 (47%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 269 SLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSV-PKSFRNLCRLRALYQDSNN 327
           +L  LDLS+N+L   IPD AF    +L  LDLS N L S+ P++F  L  LR+L    NN
Sbjct: 1   NLKSLDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 328 L 328
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 68/275 (24%), Positives = 103/275 (37%), Gaps = 39/275 (14%)

Query: 125 NDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQ-------LGNLTSLQYLDLSFNF-- 175
            +   K + + +    +++ L LS    TGR+P         L     LQ LDLS N   
Sbjct: 36  GEEAAKALASALRPQPSLKELCLS-LNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94

Query: 176 DMLSKKLEWLSQLSFLEYVRLNQVNLG-EATDWLQVV--SQLPSLTELQLRGCNLPSVIA 232
                 LE L + S L+ ++LN   LG      L        P+L +L L    L     
Sbjct: 95  PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154

Query: 233 SSSVSFSNSSRSLAHLDLSLNDVSNSVYYWL---FNSSSSLVYLDLSSNKLQGPIPDSA- 288
            +      ++R L  L+L+ N + ++    L     ++ +L  LDL++N L      SA 
Sbjct: 155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL-TDEGASAL 213

Query: 289 ---FPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRD 345
                +  SL  L+L +N L              AL   S  L+  +  L L LS     
Sbjct: 214 AETLASLKSLEVLNLGDNNLTDAG--------AAAL--ASALLSPNISLLTLSLSCN--- 260

Query: 346 TLEILQLNSNMLRGSLPDITLFSSLKELHLYDNML 380
             +I    +  L   L +     SL EL L  N  
Sbjct: 261 --DITDDGAKDLAEVLAE---KESLLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 380 LDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
           L  L L+NNR T     +   L  L++LD++ N+L  +  EA  S L  L  LDLS N+L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEA-FSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.3 bits (110), Expect = 6e-05
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 3/75 (4%)

Query: 745 WKRKDSEYRNTLG--LVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIG 801
           W   D ++ +T G   +  + L +  L G IP +++ L  L S+NLS NS+ G IP  +G
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463

Query: 802 GLTLLNSLDLSKNML 816
            +T L  LDLS N  
Sbjct: 464 SITSLEVLDLSYNSF 478

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.6 bits (108), Expect = 1e-04
 Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 29/127 (22%)

Query: 489 DTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTV 548
            T   WF D       L L +    G +P+   K   +   I+LS NS  G IPP   ++
Sbjct: 413 STKGKWFID------GLGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSI 465

Query: 549 TSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFS 608
           TSL +                      LDLS N  +G +P        L +LNL  N  S
Sbjct: 466 TSLEV----------------------LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 609 GKIPDSM 615
           G++P ++
Sbjct: 504 GRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 3/68 (4%)

Query: 131 QIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKL-EWLSQLS 189
            IP  I  L++++ ++LS     G +P  LG++TSL+ LDLS+N    +  + E L QL+
Sbjct: 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS--FNGSIPESLGQLT 490

Query: 190 FLEYVRLN 197
            L  + LN
Sbjct: 491 SLRILNLN 498

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 4/73 (5%)

Query: 89  HVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLS 148
           H+  +NL   S   +RGNI  SL  +  L  L++ YN F G  IP  +G L ++R L+L+
Sbjct: 443 HLQSINLSGNS---IRGNIPPSLGSITSLEVLDLSYNSFNG-SIPESLGQLTSLRILNLN 498

Query: 149 NAGFTGRVPYQLG 161
               +GRVP  LG
Sbjct: 499 GNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.8 bits (106), Expect = 2e-04
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 648 LDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGT 707
           L L +  + G IP  I   L  L  ++L  N+  G +P  +  +  ++VLDLS N+ +G+
Sbjct: 423 LGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 708 VPQCLNNLTAM 718
           +P+ L  LT++
Sbjct: 482 IPESLGQLTSL 492

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.8 bits (106), Expect = 2e-04
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 15/87 (17%)

Query: 350 LQLNSNMLRGSLP-DITLFSSLKELHLYDNM--------------LDVLYLNNNRFTGTL 394
           L L++  LRG +P DI+    L+ ++L  N               L+VL L+ N F G++
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 395 TKSIGQLSQLELLDVASNSLKGMITEA 421
            +S+GQL+ L +L++  NSL G +  A
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 644 QLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNN 703
            L  LDL +N+++ I        LP+L VL L  NN     P     L  ++ LDLS NN
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKG-LPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 704 I 704
           +
Sbjct: 60  L 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.8 bits (103), Expect = 3e-04
 Identities = 68/243 (27%), Positives = 105/243 (43%), Gaps = 29/243 (11%)

Query: 576 LDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLS-LHLRNNSFIGE 634
           LDL+ N L   +    +    LT L+L NN  +  IP  +      L  L L +N  I  
Sbjct: 98  LDLNLNRLRSNISELLEL-TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNK-IES 154

Query: 635 LPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRI 694
           LPS +++   L  LDL  N +S +    +  +L +L  L L  N     +P ++  L  +
Sbjct: 155 LPSPLRNLPNLKNLDLSFNDLSDL--PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSAL 211

Query: 695 QVLDLSQNNISGTVPQCLNNLTAMTA-NKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYR 753
           + LDLS N+I   +   L+NL  ++    S+N +   P      N   L           
Sbjct: 212 EELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLP--ESIGNLSNL----------- 257

Query: 754 NTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSK 813
                 +++DLS+N++   I  + SL  L  L+LS NSL+  +P     L LL  L    
Sbjct: 258 ------ETLDLSNNQI-SSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLL 310

Query: 814 NML 816
             L
Sbjct: 311 LTL 313

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 6/65 (9%)

Query: 294 SLSYLDLSNNQLVSVPK-SFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQL 352
           +L  LDLSNN+L  +P  +F+ L  L+ L    NNLT + P  F  L +     L  L L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPS-----LRSLDL 55

Query: 353 NSNML 357
           + N L
Sbjct: 56  SGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.9 bits (101), Expect = 6e-04
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 380 LDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
           +D L L+N    G +   I +L  L+ ++++ NS++G I    L +++ L  LDLS+NS 
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP-PSLGSITSLEVLDLSYNSF 478

Query: 440 ILNFGSGWVP 449
                +G +P
Sbjct: 479 -----NGSIP 483

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.6 bits (100), Expect = 7e-04
 Identities = 57/193 (29%), Positives = 82/193 (42%), Gaps = 10/193 (5%)

Query: 632 IGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHL 691
           +    S +   T LT LDL +N I+ I P  IG    +L  L L  N     +P  + +L
Sbjct: 105 LRSNISELLELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKI-ESLPSPLRNL 162

Query: 692 QRIQVLDLSQNNIS-----GTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWK 746
             ++ LDLS N++S      +    LNNL       S        L      D +     
Sbjct: 163 PNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII 222

Query: 747 RKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLL 806
              S   N   L   ++LS+N+L      + +L  L +L+LS N ++    S +G LT L
Sbjct: 223 ELLSSLSNLKNLSG-LELSNNKLEDLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNL 279

Query: 807 NSLDLSKNMLMRA 819
             LDLS N L  A
Sbjct: 280 RELDLSGNSLSNA 292

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 38/155 (24%), Positives = 56/155 (36%), Gaps = 20/155 (12%)

Query: 571 EHFRYLDLSDNLLSGE----LPNCSKNWQKLTVLNLANNKFSG----KIPDSMDFNCMML 622
                L L  N L G     L    +  + L  LNLANN         + + +  NC + 
Sbjct: 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLE 196

Query: 623 SLHLRNNSF----IGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPD----LVVLS 674
            L L NN         L  ++ S   L VL+LG N ++    A +  +L      L+ LS
Sbjct: 197 VLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLS 256

Query: 675 LRSNNFHGRVPVQVCHLQR----IQVLDLSQNNIS 705
           L  N+        +  +      +  LDL  N   
Sbjct: 257 LSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 264 FNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQL 305
           F    +L  LDLS N L   I   AF    SL  LDLS N L
Sbjct: 20  FKGLPNLKVLDLSGNNLTS-ISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 41.6 bits (97), Expect = 0.002
 Identities = 62/229 (27%), Positives = 102/229 (44%), Gaps = 41/229 (17%)

Query: 292 PTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQ 351
           P  ++ L L NN+L S+P++ +    ++ LY +SN LT +   L         DT++ ++
Sbjct: 198 PEQITTLILDNNELKSLPENLQG--NIKTLYANSNQLTSIPATL--------PDTIQEME 247

Query: 352 LNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVAS 411
           L+ N +   LP+  L S+L+ L L+ N +  L          L +      +L  L V  
Sbjct: 248 LSINRIT-ELPE-RLPSALQSLDLFHNKISCL-------PENLPE------ELRYLSVYD 292

Query: 412 NSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQ-FPKW 470
           NS++ +   AHL   S +T+L++  NSL         P  +       A    P   P  
Sbjct: 293 NSIRTL--PAHLP--SGITHLNVQSNSLTA-LPETLPPGLKTLEAGENALTSLPASLPPE 347

Query: 471 LQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDL 519
           LQ       LDVS  +I+  +P     L P +  L++S N  T +  +L
Sbjct: 348 LQV------LDVSKNQIT-VLPE---TLPPTITTLDVSRNALTNLPENL 386

Length = 754

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	820
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.67
PLN03150	623	hypothetical protein; Provisional	99.52
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.37
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.36
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.32
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.23
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.17
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.12
PLN03150	623	hypothetical protein; Provisional	99.12
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.11
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.97
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.96
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.94
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.93
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.93
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.89
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.87
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.73
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.71
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.66
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.66
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.56
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.53
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.45
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.38
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.36
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.26
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.22
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.14
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.07
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.01
KOG4341	483	consensus F-box protein containing LRR [General fu	97.95
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.88
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.86
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.86
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.72
KOG4341	483	consensus F-box protein containing LRR [General fu	97.72
PRK15386	426	type III secretion protein GogB; Provisional	97.6
PRK15386	426	type III secretion protein GogB; Provisional	97.58
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.54
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.52
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.27
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.22
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.76
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.7
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.47
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.46
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.4
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.89
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.48
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.12
KOG4308	478	consensus LRR-containing protein [Function unknown	94.74
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.47
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.47
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.41
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.54
KOG4308	478	consensus LRR-containing protein [Function unknown	88.55
smart00370	26	LRR Leucine-rich repeats, outliers.	87.94
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.94
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.57
smart00370	26	LRR Leucine-rich repeats, outliers.	87.57
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.92
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	82.52
KOG3864	221	consensus Uncharacterized conserved protein [Funct	80.88

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1e-67  Score=648.77  Aligned_cols=576  Identities=33%  Similarity=0.516  Sum_probs=411.7

Q ss_pred             CHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCcccCceEecCCCCcEEEEEcCCCCCCCCcccccccccCCCCCCEEE
Q 045139           42 IERERQALLMFKQGLIDEYGHLSSWGNEDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLN  121 (820)
Q Consensus        42 ~~~~~~~l~~~~~~~~~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~  121 (820)
                      .++|++||++||+++.+|.+.+.+|.   .+.+||.|.||+|++ .++|+.|+|++   +.++|.+++++..+++|++|+
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~---~~i~~~~~~~~~~l~~L~~L~   99 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSG---KNISGKISSAIFRLPYIQTIN   99 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecC---CCccccCChHHhCCCCCCEEE
Confidence            44789999999999988888889997   467899999999975 57999999998   889999999999999999999


Q ss_pred             CcCCCCCCcccCcccc-CCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCeeeCCCcc
Q 045139          122 MKYNDFGGKQIPAFIG-SLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVN  200 (820)
Q Consensus       122 Ls~n~l~~~~~p~~i~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~  200 (820)
                      |++|.+.+. +|..+. .+++|++|+|++|.+++.+|.  +.+++|++|++++|                         .
T Consensus       100 Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n-------------------------~  151 (968)
T PLN00113        100 LSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNN-------------------------M  151 (968)
T ss_pred             CCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCC-------------------------c
Confidence            999999885 887765 899999999999999988884  45666777777666                         3


Q ss_pred             CCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEEEccCCcc
Q 045139          201 LGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKL  280 (820)
Q Consensus       201 l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l  280 (820)
                      +.+  .+|..++++++|++|++++|.+.+..|   ..+.++ ++|++|++++|.+++.+|..+..+. +|++|++++|.+
T Consensus       152 ~~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p---~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l  224 (968)
T PLN00113        152 LSG--EIPNDIGSFSSLKVLDLGGNVLVGKIP---NSLTNL-TSLEFLTLASNQLVGQIPRELGQMK-SLKWIYLGYNNL  224 (968)
T ss_pred             ccc--cCChHHhcCCCCCEEECccCcccccCC---hhhhhC-cCCCeeeccCCCCcCcCChHHcCcC-CccEEECcCCcc
Confidence            322  244556666666666666666666555   344444 5555555555555555555554444 555555555555


Q ss_pred             cCCCCCCCCCCCCCCCEEECCCCCCC-CcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcc
Q 045139          281 QGPIPDSAFPNPTSLSYLDLSNNQLV-SVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRG  359 (820)
Q Consensus       281 ~g~ip~~~l~~l~~L~~L~Ls~n~l~-~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~  359 (820)
                      ++.+|.. ++++++|++|++++|.++ .+|..++++++|++|++++|++++..|..+..+.     +|+.|++++|.+. 
T Consensus       225 ~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-----~L~~L~Ls~n~l~-  297 (968)
T PLN00113        225 SGEIPYE-IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ-----KLISLDLSDNSLS-  297 (968)
T ss_pred             CCcCChh-HhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhcc-----CcCEEECcCCeec-
Confidence            5555544 455555555555555544 4444455555555555555555444444444444     4444444444443 


Q ss_pred             cCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCcc
Q 045139          360 SLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL  439 (820)
Q Consensus       360 ~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l  439 (820)
                                                      +.+|..+.++++|+.|++++|.+.+.+|. .+..+++|+.|++++|.+
T Consensus       298 --------------------------------~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l  344 (968)
T PLN00113        298 --------------------------------GEIPELVIQLQNLEILHLFSNNFTGKIPV-ALTSLPRLQVLQLWSNKF  344 (968)
T ss_pred             --------------------------------cCCChhHcCCCCCcEEECCCCccCCcCCh-hHhcCCCCCEEECcCCCC
Confidence                                            34444445555555555555555554444 345555555555555444


Q ss_pred             ccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcc
Q 045139          440 ILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDL  519 (820)
Q Consensus       440 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~  519 (820)
                      .                        +.+|.++..+++|+.|++++|++.+.+|.++... ++|+.|++++|++.+.+|..
T Consensus       345 ~------------------------~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~-~~L~~L~l~~n~l~~~~p~~  399 (968)
T PLN00113        345 S------------------------GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS-GNLFKLILFSNSLEGEIPKS  399 (968)
T ss_pred             c------------------------CcCChHHhCCCCCcEEECCCCeeEeeCChhHhCc-CCCCEEECcCCEecccCCHH
Confidence            3                        2334444555555555555555555555555443 45666666666555554442


Q ss_pred             cccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccCcccccCCCCcE
Q 045139          520 SQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTV  599 (820)
Q Consensus       520 ~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  599 (820)
                      +..                         +.                      +|+.|++++|++++.+|..+..++.|+.
T Consensus       400 ~~~-------------------------~~----------------------~L~~L~L~~n~l~~~~p~~~~~l~~L~~  432 (968)
T PLN00113        400 LGA-------------------------CR----------------------SLRRVRLQDNSFSGELPSEFTKLPLVYF  432 (968)
T ss_pred             HhC-------------------------CC----------------------CCCEEECcCCEeeeECChhHhcCCCCCE
Confidence            221                         11                      6788889999998889999999999999


Q ss_pred             EEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCccc
Q 045139          600 LNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNN  679 (820)
Q Consensus       600 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~  679 (820)
                      |++++|++++.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|++++.+|..+. .+++|+.|++++|+
T Consensus       433 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~  510 (968)
T PLN00113        433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLG-SLSELMQLKLSENK  510 (968)
T ss_pred             EECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhh-hhhccCEEECcCCc
Confidence            9999999999888888889999999999999998888765 458899999999999999998887 78999999999999


Q ss_pred             ccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeeccccccccccCce
Q 045139          680 FHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLV  759 (820)
Q Consensus       680 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  759 (820)
                      +.+.+|..+..+++|++|++++|+++|.+|..+.+++.|                                         
T Consensus       511 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-----------------------------------------  549 (968)
T PLN00113        511 LSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL-----------------------------------------  549 (968)
T ss_pred             ceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccC-----------------------------------------
Confidence            999999999999999999999999999999988888777                                         


Q ss_pred             EEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCc
Q 045139          760 KSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNM  815 (820)
Q Consensus       760 ~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~  815 (820)
                      +.|||++|+++|.+| .+..+++|+.|++++|+++|.+|.. +.+..+....+.+|+
T Consensus       550 ~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~  605 (968)
T PLN00113        550 SQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNI  605 (968)
T ss_pred             CEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCc
Confidence            889999999999999 8889999999999999999999864 445556666667776

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=7.8e-56  Score=543.62  Aligned_cols=515  Identities=31%  Similarity=0.465  Sum_probs=380.1

Q ss_pred             CCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCC
Q 045139          216 SLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSL  295 (820)
Q Consensus       216 ~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L  295 (820)
                      +++.|++++|.+++.++   ..+..+ ++|++|++++|.+++.+|..++...++|++|++++|.++|.+|.   +.+++|
T Consensus        70 ~v~~L~L~~~~i~~~~~---~~~~~l-~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L  142 (968)
T PLN00113         70 RVVSIDLSGKNISGKIS---SAIFRL-PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNL  142 (968)
T ss_pred             cEEEEEecCCCccccCC---hHHhCC-CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCC
Confidence            34455555555554444   333444 55555555555555555555543333555555555555555553   234555


Q ss_pred             CEEECCCCCCC-CcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCC-CcCcCCCcEE
Q 045139          296 SYLDLSNNQLV-SVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPD-ITLFSSLKEL  373 (820)
Q Consensus       296 ~~L~Ls~n~l~-~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~-~~~l~~L~~L  373 (820)
                      ++|++++|.++ .+|..++++++|++|++++|.+.+..|..+.+++     +|++|++++|.+.+.+|. ++.+++|+.|
T Consensus       143 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-----~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  217 (968)
T PLN00113        143 ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT-----SLEFLTLASNQLVGQIPRELGQMKSLKWI  217 (968)
T ss_pred             CEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCc-----CCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence            55555555555 4555555555555555555555555555555555     555555555555555554 5555555544


Q ss_pred             ecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCcccc
Q 045139          374 HLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFEL  453 (820)
Q Consensus       374 ~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L  453 (820)
                                ++++|.+++.+|..++++++|++|++++|.+++.+|. .++++++|++|++++|.+.+..|..+....+|
T Consensus       218 ----------~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  286 (968)
T PLN00113        218 ----------YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL  286 (968)
T ss_pred             ----------ECcCCccCCcCChhHhcCCCCCEEECcCceeccccCh-hHhCCCCCCEEECcCCeeeccCchhHhhccCc
Confidence                      2334444555555556666666666666666555554 45566666666666666555555555555555


Q ss_pred             ceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceecc
Q 045139          454 NIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLS  533 (820)
Q Consensus       454 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls  533 (820)
                      +.|++++|.+.+.+|.++..+++|+.|++++|.+.+.+|.++..+ ++|+.|++++|.+.+.+|..+.....+ +.++++
T Consensus       287 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~~~~L-~~L~Ls  364 (968)
T PLN00113        287 ISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNKFSGEIPKNLGKHNNL-TVLDLS  364 (968)
T ss_pred             CEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcC-CCCCEEECcCCCCcCcCChHHhCCCCC-cEEECC
Confidence            566666666666677777777777777777777777777766554 577777777777777777666666666 777777


Q ss_pred             CCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCC
Q 045139          534 ANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPD  613 (820)
Q Consensus       534 ~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  613 (820)
                      +|++++.+|..+..+.                      +++.|++++|++.+.+|..+..+++|+.|++++|++++.+|.
T Consensus       365 ~n~l~~~~p~~~~~~~----------------------~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~  422 (968)
T PLN00113        365 TNNLTGEIPEGLCSSG----------------------NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS  422 (968)
T ss_pred             CCeeEeeCChhHhCcC----------------------CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh
Confidence            7777776665443332                      789999999999999999999999999999999999999999


Q ss_pred             CcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCC
Q 045139          614 SMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQR  693 (820)
Q Consensus       614 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  693 (820)
                      .+..++.|+.|++++|.+++.+|..+..+++|++|++++|++.+.+|..+.  .++|+.|++++|++++.+|..+..+++
T Consensus       423 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~--~~~L~~L~ls~n~l~~~~~~~~~~l~~  500 (968)
T PLN00113        423 EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG--SKRLENLDLSRNQFSGAVPRKLGSLSE  500 (968)
T ss_pred             hHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc--cccceEEECcCCccCCccChhhhhhhc
Confidence            999999999999999999999999999999999999999999999998764  789999999999999999999999999


Q ss_pred             CCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecC
Q 045139          694 IQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEI  773 (820)
Q Consensus       694 L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~i  773 (820)
                      |+.|++++|++.+.+|..+.++++|                                         ++|||++|+++|.+
T Consensus       501 L~~L~Ls~N~l~~~~p~~~~~l~~L-----------------------------------------~~L~Ls~N~l~~~~  539 (968)
T PLN00113        501 LMQLKLSENKLSGEIPDELSSCKKL-----------------------------------------VSLDLSHNQLSGQI  539 (968)
T ss_pred             cCEEECcCCcceeeCChHHcCccCC-----------------------------------------CEEECCCCcccccC
Confidence            9999999999999999999988888                                         89999999999999


Q ss_pred             C-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCcCcccC
Q 045139          774 P-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLMRAT  820 (820)
Q Consensus       774 p-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~g~i  820 (820)
                      | .+..+++|+.|+|++|+++|.+|..+.++++|+.||+++|+++|.|
T Consensus       540 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~  587 (968)
T PLN00113        540 PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL  587 (968)
T ss_pred             ChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeC
Confidence            9 9999999999999999999999999999999999999999999865

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=4.5e-42  Score=340.88  Aligned_cols=488  Identities=28%  Similarity=0.355  Sum_probs=345.5

Q ss_pred             CCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCC
Q 045139          191 LEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSL  270 (820)
Q Consensus       191 L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L  270 (820)
                      |+.+.+++|.+..   +...+.++..|.+|++.+|.+...+|    +++++ ..++.++.+.|++. .+|+.+.... ++
T Consensus        47 l~~lils~N~l~~---l~~dl~nL~~l~vl~~~~n~l~~lp~----aig~l-~~l~~l~vs~n~ls-~lp~~i~s~~-~l  116 (565)
T KOG0472|consen   47 LQKLILSHNDLEV---LREDLKNLACLTVLNVHDNKLSQLPA----AIGEL-EALKSLNVSHNKLS-ELPEQIGSLI-SL  116 (565)
T ss_pred             hhhhhhccCchhh---ccHhhhcccceeEEEeccchhhhCCH----HHHHH-HHHHHhhcccchHh-hccHHHhhhh-hh
Confidence            3444444444443   33456777888888888888776655    56666 77888888888887 6788888887 89


Q ss_pred             cEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEE
Q 045139          271 VYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEIL  350 (820)
Q Consensus       271 ~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L  350 (820)
                      ++++.++|.+. ++|++ ++.+..|+.++..+|+++++|+.++++.+|..+++.+|++....|..+. ++     .|+++
T Consensus       117 ~~l~~s~n~~~-el~~~-i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~-----~L~~l  188 (565)
T KOG0472|consen  117 VKLDCSSNELK-ELPDS-IGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MK-----RLKHL  188 (565)
T ss_pred             hhhhcccccee-ecCch-HHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HH-----HHHhc
Confidence            99999999998 78888 8889999999999999999999999999999999999999988777666 77     89999


Q ss_pred             EcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCC
Q 045139          351 QLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLT  430 (820)
Q Consensus       351 ~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~  430 (820)
                      |...|-+....|.++.+.+|+-|++..|+++           .+| .|.+|..|+++.++.|+|.- +|++...+++++.
T Consensus       189 d~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-----------~lP-ef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~l~  255 (565)
T KOG0472|consen  189 DCNSNLLETLPPELGGLESLELLYLRRNKIR-----------FLP-EFPGCSLLKELHVGENQIEM-LPAEHLKHLNSLL  255 (565)
T ss_pred             ccchhhhhcCChhhcchhhhHHHHhhhcccc-----------cCC-CCCccHHHHHHHhcccHHHh-hHHHHhcccccce
Confidence            9999988865555999999988877666655           556 78999999999999999874 7887888999999


Q ss_pred             EEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcCCC
Q 045139          431 YLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHN  510 (820)
Q Consensus       431 ~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n  510 (820)
                      .||+.+|+++                         +.|+.+.-+++|++||+++|.|++ .|..++.+  .|+.|.+.+|
T Consensus       256 vLDLRdNklk-------------------------e~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl--hL~~L~leGN  307 (565)
T KOG0472|consen  256 VLDLRDNKLK-------------------------EVPDEICLLRSLERLDLSNNDISS-LPYSLGNL--HLKFLALEGN  307 (565)
T ss_pred             eeeccccccc-------------------------cCchHHHHhhhhhhhcccCCcccc-CCcccccc--eeeehhhcCC
Confidence            9999999984                         678888888889999999998864 55566665  7888888888


Q ss_pred             cCCCCCCcccccccC-CCCcee--ccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCcccccc
Q 045139          511 HFTGMLPDLSQKFTA-YPPEID--LSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGEL  587 (820)
Q Consensus       511 ~l~~~~p~~~~~~~~-l~~~l~--ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  587 (820)
                      ++..+-.+.+...+. .++++.  +..-.++..   .-+.-...+..    .+..|....  ..+.+.|++++-+++ .+
T Consensus       308 PlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~s---e~~~e~~~t~~----~~~~~~~~~--~i~tkiL~~s~~qlt-~V  377 (565)
T KOG0472|consen  308 PLRTIRREIISKGTQEVLKYLRSKIKDDGLSQS---EGGTETAMTLP----SESFPDIYA--IITTKILDVSDKQLT-LV  377 (565)
T ss_pred             chHHHHHHHHcccHHHHHHHHHHhhccCCCCCC---cccccccCCCC----CCcccchhh--hhhhhhhcccccccc-cC
Confidence            875332221111110 001110  000000000   00000000000    000111000  016788888888887 56


Q ss_pred             CcccccCCC---CcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchh
Q 045139          588 PNCSKNWQK---LTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIG  664 (820)
Q Consensus       588 p~~~~~l~~---L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  664 (820)
                      |+.......   .+..++++|++. .+|..+..+..+.+.-+.+|+..+-+|..+..+++|..|+|++|.+. .+|.+++
T Consensus       378 PdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~  455 (565)
T KOG0472|consen  378 PDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMG  455 (565)
T ss_pred             CHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhh
Confidence            665444433   778888888887 67877777766665444444444567777788888888888888776 6777777


Q ss_pred             cCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEE
Q 045139          665 DSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLV  744 (820)
Q Consensus       665 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  744 (820)
                       .+..|+.|++++|+|. .+|..+..+..++.+-.++|++...-|+.+.++..|                          
T Consensus       456 -~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL--------------------------  507 (565)
T KOG0472|consen  456 -SLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL--------------------------  507 (565)
T ss_pred             -hhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhc--------------------------
Confidence             5777888888888777 677777777777777677777764444446666665                          


Q ss_pred             eeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccc
Q 045139          745 WKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLT  793 (820)
Q Consensus       745 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~  793 (820)
                                     ++|||.+|.+. .|| .+++|++|++|++++|.++
T Consensus       508 ---------------~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  508 ---------------TTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ---------------ceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence                           77888888887 555 7888888888888888777

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.2e-40  Score=330.88  Aligned_cols=262  Identities=29%  Similarity=0.398  Sum_probs=145.3

Q ss_pred             EEEEcCCCCCCCCcccccccccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEe
Q 045139           91 TMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLD  170 (820)
Q Consensus        91 ~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  170 (820)
                      ..+.+++   +.+. .+.+.+.++..|.+|++++|++..  +|++++.+..++.|+.++|+++ ++|+.++.+.+|++|+
T Consensus        48 ~~lils~---N~l~-~l~~dl~nL~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~  120 (565)
T KOG0472|consen   48 QKLILSH---NDLE-VLREDLKNLACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD  120 (565)
T ss_pred             hhhhhcc---Cchh-hccHhhhcccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence            3445554   3333 344566677777777777777654  6777777777777777777777 6777777777777777


Q ss_pred             CCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEEC
Q 045139          171 LSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDL  250 (820)
Q Consensus       171 Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~L  250 (820)
                      .++|                         .+..   ++..++.+..|+.++..+|+++..++    .+..+ .++..+++
T Consensus       121 ~s~n-------------------------~~~e---l~~~i~~~~~l~dl~~~~N~i~slp~----~~~~~-~~l~~l~~  167 (565)
T KOG0472|consen  121 CSSN-------------------------ELKE---LPDSIGRLLDLEDLDATNNQISSLPE----DMVNL-SKLSKLDL  167 (565)
T ss_pred             cccc-------------------------ceee---cCchHHHHhhhhhhhccccccccCch----HHHHH-HHHHHhhc
Confidence            7666                         2221   33444455555555555555544433    23333 44555555


Q ss_pred             cCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCC
Q 045139          251 SLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTD  330 (820)
Q Consensus       251 s~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~  330 (820)
                      .+|++....|. ...+. .|++||...|.++ .+|++ ++.+.+|+.|++..|++..+| +|+++..|++++++.|+|.-
T Consensus       168 ~~n~l~~l~~~-~i~m~-~L~~ld~~~N~L~-tlP~~-lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~  242 (565)
T KOG0472|consen  168 EGNKLKALPEN-HIAMK-RLKHLDCNSNLLE-TLPPE-LGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEM  242 (565)
T ss_pred             cccchhhCCHH-HHHHH-HHHhcccchhhhh-cCChh-hcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHh
Confidence            55555432222 22233 5566666555555 55555 556666666666666666555 45555555555555555554


Q ss_pred             cchhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecC
Q 045139          331 LLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVA  410 (820)
Q Consensus       331 ~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  410 (820)
                      ...+...++.     ++.+|||..|++.                                  ..|+.+.-+++|++||++
T Consensus       243 lpae~~~~L~-----~l~vLDLRdNklk----------------------------------e~Pde~clLrsL~rLDlS  283 (565)
T KOG0472|consen  243 LPAEHLKHLN-----SLLVLDLRDNKLK----------------------------------EVPDEICLLRSLERLDLS  283 (565)
T ss_pred             hHHHHhcccc-----cceeeeccccccc----------------------------------cCchHHHHhhhhhhhccc
Confidence            3333333444     4444444444444                                  445555555566666666


Q ss_pred             CCcCccccCHHHhhcCCCCCEEeCcCCcc
Q 045139          411 SNSLKGMITEAHLSNLSRLTYLDLSHNSL  439 (820)
Q Consensus       411 ~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l  439 (820)
                      +|.|++ .|. .++++ .|+.|.+.+|++
T Consensus       284 NN~is~-Lp~-sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  284 NNDISS-LPY-SLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             CCcccc-CCc-ccccc-eeeehhhcCCch
Confidence            666655 333 35666 666666666655

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-36  Score=311.00  Aligned_cols=365  Identities=22%  Similarity=0.244  Sum_probs=242.3

Q ss_pred             CCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCcc
Q 045139          269 SLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLE  348 (820)
Q Consensus       269 ~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~  348 (820)
                      .-+.||+++|.+. .+....|.++++|+++++.+|.++.||...+...+|+.|+|.+|.|+.+..+.+..++     .|+
T Consensus        79 ~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~-----alr  152 (873)
T KOG4194|consen   79 QTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALP-----ALR  152 (873)
T ss_pred             ceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHh-----hhh
Confidence            4466777777777 4544447777788888888887777777655566688888888888777777777777     788


Q ss_pred             EEEcCCCCCcccCCC-CcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCC
Q 045139          349 ILQLNSNMLRGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLS  427 (820)
Q Consensus       349 ~L~L~~n~l~~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~  427 (820)
                      .|||+.|.++..... +..-.++++|+          |++|+|+..-...|..+.+|..|.|+.|+++. +|...|.+++
T Consensus       153 slDLSrN~is~i~~~sfp~~~ni~~L~----------La~N~It~l~~~~F~~lnsL~tlkLsrNritt-Lp~r~Fk~L~  221 (873)
T KOG4194|consen  153 SLDLSRNLISEIPKPSFPAKVNIKKLN----------LASNRITTLETGHFDSLNSLLTLKLSRNRITT-LPQRSFKRLP  221 (873)
T ss_pred             hhhhhhchhhcccCCCCCCCCCceEEe----------eccccccccccccccccchheeeecccCcccc-cCHHHhhhcc
Confidence            888888877743322 54445566554          44555555555677777888888888888876 5666788888


Q ss_pred             CCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEc
Q 045139          428 RLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNL  507 (820)
Q Consensus       428 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l  507 (820)
                      +|+.|+|..|++...-...|.++.+|+.+.+..|.+...-...|..+.++++|+++.|+++..-..|++++ ..|+.|++
T Consensus       222 ~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL-t~L~~L~l  300 (873)
T KOG4194|consen  222 KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL-TSLEQLDL  300 (873)
T ss_pred             hhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc-chhhhhcc
Confidence            88888888888866656667777777777777777776666777788888888888888877777777775 57888888


Q ss_pred             CCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCcccccc
Q 045139          508 SHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGEL  587 (820)
Q Consensus       508 s~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  587 (820)
                      ++|.|..+-++.+....                                               +|++|+|++|+++...
T Consensus       301 S~NaI~rih~d~Wsftq-----------------------------------------------kL~~LdLs~N~i~~l~  333 (873)
T KOG4194|consen  301 SYNAIQRIHIDSWSFTQ-----------------------------------------------KLKELDLSSNRITRLD  333 (873)
T ss_pred             chhhhheeecchhhhcc-----------------------------------------------cceeEeccccccccCC
Confidence            88877765555433333                                               4555566666655555


Q ss_pred             CcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCc---chhcCCCCCEEECCCCcCccccCcchh
Q 045139          588 PNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPS---SVKSFTQLTVLDLGHNKISGIIPAWIG  664 (820)
Q Consensus       588 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p~~l~  664 (820)
                      +..|..+..|++|+|++|++...-..+|..+++|++|||++|.++..+.+   .|.++++|+.|++.+|++. .||.--+
T Consensus       334 ~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAf  412 (873)
T KOG4194|consen  334 EGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAF  412 (873)
T ss_pred             hhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhh
Confidence            55555566666666666665544445555566666666666665544432   3445566666666666665 4443333


Q ss_pred             cCCCCccEEEcCcccccccCCcccCCCCCCCEEeCc
Q 045139          665 DSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLS  700 (820)
Q Consensus       665 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  700 (820)
                      .+++.|+.|+|.+|.+..+-|.+|..+ .|++|-+.
T Consensus       413 sgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  413 SGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             ccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence            356666666666666665556666555 55555443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.5e-35  Score=304.46  Aligned_cols=364  Identities=22%  Similarity=0.271  Sum_probs=263.1

Q ss_pred             CcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcC-CCcEEecCCCcccEEEccCCcccccccc
Q 045139          318 LRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFS-SLKELHLYDNMLDVLYLNNNRFTGTLTK  396 (820)
Q Consensus       318 L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~-~L~~L~l~~n~L~~L~L~~n~l~~~~~~  396 (820)
                      -+.|++++|++..+.+..|.+++     +|+.+++.+|.++ .+|.++... +|+.|+          |.+|.|+..-.+
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~-----nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~----------L~~N~I~sv~se  143 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLP-----NLQEVNLNKNELT-RIPRFGHESGHLEKLD----------LRHNLISSVTSE  143 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCC-----cceeeeeccchhh-hcccccccccceeEEe----------eeccccccccHH
Confidence            34567777777776666666666     6777777666666 444433222 244332          333333333444


Q ss_pred             cccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCC
Q 045139          397 SIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNK  476 (820)
Q Consensus       397 ~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~  476 (820)
                      .+..++.|+.|||+.|.|+. ++...|..-.++++|+|++|.|+                        ..-...|..+.+
T Consensus       144 ~L~~l~alrslDLSrN~is~-i~~~sfp~~~ni~~L~La~N~It------------------------~l~~~~F~~lns  198 (873)
T KOG4194|consen  144 ELSALPALRSLDLSRNLISE-IPKPSFPAKVNIKKLNLASNRIT------------------------TLETGHFDSLNS  198 (873)
T ss_pred             HHHhHhhhhhhhhhhchhhc-ccCCCCCCCCCceEEeecccccc------------------------ccccccccccch
Confidence            55555666666666666654 34334555555666666666554                        334445666667


Q ss_pred             ccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCc
Q 045139          477 FSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKN  556 (820)
Q Consensus       477 L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n  556 (820)
                      |..|.++.|+++. +|...+..+++|+.|+|..|++.-.---.|.                         .+        
T Consensus       199 L~tlkLsrNritt-Lp~r~Fk~L~~L~~LdLnrN~irive~ltFq-------------------------gL--------  244 (873)
T KOG4194|consen  199 LLTLKLSRNRITT-LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQ-------------------------GL--------  244 (873)
T ss_pred             heeeecccCcccc-cCHHHhhhcchhhhhhccccceeeehhhhhc-------------------------Cc--------
Confidence            7777777777754 3443444346777777777766421100000                         11        


Q ss_pred             ccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCC
Q 045139          557 MFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELP  636 (820)
Q Consensus       557 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  636 (820)
                                    .+|+.|.+..|.+...-...|..|.++++|+|+.|++...-..++-++++|+.|++|.|.|..+.+
T Consensus       245 --------------~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~  310 (873)
T KOG4194|consen  245 --------------PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI  310 (873)
T ss_pred             --------------hhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence                          167888888888887777889999999999999999998778888999999999999999999999


Q ss_pred             cchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchh---cc
Q 045139          637 SSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQC---LN  713 (820)
Q Consensus       637 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~---l~  713 (820)
                      ++++.+++|++|||++|+|+..-+..+. .+..|++|+|++|.+...-...|..+++|++|||++|.+++.|.+.   |.
T Consensus       311 d~WsftqkL~~LdLs~N~i~~l~~~sf~-~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~  389 (873)
T KOG4194|consen  311 DSWSFTQKLKELDLSSNRITRLDEGSFR-VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN  389 (873)
T ss_pred             chhhhcccceeEeccccccccCChhHHH-HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhc
Confidence            9999999999999999999965556665 7999999999999998777778889999999999999999877652   33


Q ss_pred             ccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC--CcccccCCCEEeCCCCc
Q 045139          714 NLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP--EVTSLVGLISLNLSKNS  791 (820)
Q Consensus       714 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip--~l~~l~~L~~L~Ls~N~  791 (820)
                      ++                                         ++|+.|+|.+|++. .||  .|..+.+|++|||.+|.
T Consensus       390 gl-----------------------------------------~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  390 GL-----------------------------------------PSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNA  427 (873)
T ss_pred             cc-----------------------------------------hhhhheeecCceee-ecchhhhccCcccceecCCCCc
Confidence            33                                         44589999999998 777  89999999999999999


Q ss_pred             cccCCcccccCCCCCCeEeCCCC
Q 045139          792 LTGPIPSKIGGLTLLNSLDLSKN  814 (820)
Q Consensus       792 l~~~ip~~l~~l~~L~~LdLs~N  814 (820)
                      |...-|++|..+ .|+.|-+..-
T Consensus       428 iaSIq~nAFe~m-~Lk~Lv~nSs  449 (873)
T KOG4194|consen  428 IASIQPNAFEPM-ELKELVMNSS  449 (873)
T ss_pred             ceeecccccccc-hhhhhhhccc
Confidence            999999999998 8888876543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=3.9e-36  Score=328.19  Aligned_cols=505  Identities=26%  Similarity=0.315  Sum_probs=295.1

Q ss_pred             EECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCeeeCCCc
Q 045139          120 LNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQV  199 (820)
Q Consensus       120 L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n  199 (820)
                      +|++...+.-  ||..+-.-..++.|+++.|.+....-+.+.+..+|+.||+++|                         
T Consensus         3 vd~s~~~l~~--ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn-------------------------   55 (1081)
T KOG0618|consen    3 VDASDEQLEL--IPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNN-------------------------   55 (1081)
T ss_pred             cccccccCcc--cchhhccHHHHHhhhccccccccCchHHhhheeeeEEeecccc-------------------------
Confidence            3445444432  5555444444556666655544211122333333455555444                         


Q ss_pred             cCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEEEccCCc
Q 045139          200 NLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNK  279 (820)
Q Consensus       200 ~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~  279 (820)
                      .++.   +|..+..+.+|+.|.++.|.+...+    ....++ ++|+++.|.+|.+. ..|..+.... +|++|+++.|.
T Consensus        56 ~~~~---fp~~it~l~~L~~ln~s~n~i~~vp----~s~~~~-~~l~~lnL~~n~l~-~lP~~~~~lk-nl~~LdlS~N~  125 (1081)
T KOG0618|consen   56 QISS---FPIQITLLSHLRQLNLSRNYIRSVP----SSCSNM-RNLQYLNLKNNRLQ-SLPASISELK-NLQYLDLSFNH  125 (1081)
T ss_pred             cccc---CCchhhhHHHHhhcccchhhHhhCc----hhhhhh-hcchhheeccchhh-cCchhHHhhh-cccccccchhc
Confidence            4433   3444555555555555555544332    123333 45555555554443 4444444444 55555555555


Q ss_pred             ccCCCCCCCCCCCCCCCEEECCCC-CCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCc
Q 045139          280 LQGPIPDSAFPNPTSLSYLDLSNN-QLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLR  358 (820)
Q Consensus       280 l~g~ip~~~l~~l~~L~~L~Ls~n-~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~  358 (820)
                      +. .+|.- +..++.++.+..++| ++..++.    .. ++.+++..|.+.+.++..+..+.     .  .|+|.+|.+.
T Consensus       126 f~-~~Pl~-i~~lt~~~~~~~s~N~~~~~lg~----~~-ik~~~l~~n~l~~~~~~~i~~l~-----~--~ldLr~N~~~  191 (1081)
T KOG0618|consen  126 FG-PIPLV-IEVLTAEEELAASNNEKIQRLGQ----TS-IKKLDLRLNVLGGSFLIDIYNLT-----H--QLDLRYNEME  191 (1081)
T ss_pred             cC-CCchh-HHhhhHHHHHhhhcchhhhhhcc----cc-chhhhhhhhhcccchhcchhhhh-----e--eeecccchhh
Confidence            55 55544 445555555555555 1112221    11 55555555555555555444433     2  4566666554


Q ss_pred             ccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCc
Q 045139          359 GSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNS  438 (820)
Q Consensus       359 ~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~  438 (820)
                        .-.+..+.+|+.++...|++..+.+++              ++|+.|+.++|.++...+   -..-.+|+++++++|+
T Consensus       192 --~~dls~~~~l~~l~c~rn~ls~l~~~g--------------~~l~~L~a~~n~l~~~~~---~p~p~nl~~~dis~n~  252 (1081)
T KOG0618|consen  192 --VLDLSNLANLEVLHCERNQLSELEISG--------------PSLTALYADHNPLTTLDV---HPVPLNLQYLDISHNN  252 (1081)
T ss_pred             --hhhhhhccchhhhhhhhcccceEEecC--------------cchheeeeccCcceeecc---ccccccceeeecchhh
Confidence              223444555555555555444433221              345555555555553211   1122355555555555


Q ss_pred             cccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCc
Q 045139          439 LILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPD  518 (820)
Q Consensus       439 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~  518 (820)
                      +.                         .+|.|+..+.+|+.++..+|++ ..+|..++.. .+|+.|.+.+|.+.-..| 
T Consensus       253 l~-------------------------~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~-~~L~~l~~~~nel~yip~-  304 (1081)
T KOG0618|consen  253 LS-------------------------NLPEWIGACANLEALNANHNRL-VALPLRISRI-TSLVSLSAAYNELEYIPP-  304 (1081)
T ss_pred             hh-------------------------cchHHHHhcccceEecccchhH-HhhHHHHhhh-hhHHHHHhhhhhhhhCCC-
Confidence            53                         4567777777777777777777 3445544443 356666655555543222 


Q ss_pred             ccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccCc-ccccCCC-
Q 045139          519 LSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPN-CSKNWQK-  596 (820)
Q Consensus       519 ~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~-  596 (820)
                                               .+..++                      .|++|+|..|++. ..|+ .+.-... 
T Consensus       305 -------------------------~le~~~----------------------sL~tLdL~~N~L~-~lp~~~l~v~~~~  336 (1081)
T KOG0618|consen  305 -------------------------FLEGLK----------------------SLRTLDLQSNNLP-SLPDNFLAVLNAS  336 (1081)
T ss_pred             -------------------------cccccc----------------------eeeeeeehhcccc-ccchHHHhhhhHH
Confidence                                     122222                      6788888888887 4444 3333333 


Q ss_pred             CcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcC
Q 045139          597 LTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLR  676 (820)
Q Consensus       597 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~  676 (820)
                      |..|+.+.|++.......=...+.|+.|.+.+|.++...-+.+.+.+.|+.|+|++|++. .+|.....++..|+.|+||
T Consensus       337 l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LS  415 (1081)
T KOG0618|consen  337 LNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLS  415 (1081)
T ss_pred             HHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcc
Confidence            777888888877433222233567888999999998887778888889999999999987 7887766688888999999


Q ss_pred             cccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeecccccccccc
Q 045139          677 SNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTL  756 (820)
Q Consensus       677 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  756 (820)
                      +|+++ .+|..+..+..|++|...+|++. ..| .+.+++.|                                      
T Consensus       416 GNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL--------------------------------------  454 (1081)
T KOG0618|consen  416 GNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQL--------------------------------------  454 (1081)
T ss_pred             cchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcc--------------------------------------
Confidence            99988 78888888889999988888887 566 66666666                                      


Q ss_pred             CceEEEECCCCcCeec-CCCcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCc
Q 045139          757 GLVKSIDLSSNRLYGE-IPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNM  815 (820)
Q Consensus       757 ~~L~~LdLs~N~l~~~-ip~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~  815 (820)
                         +.+|+|.|+|+.. +|.-..-++|++|||++|.=.-..-..|..+.++...|++-|+
T Consensus       455 ---~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~~  511 (1081)
T KOG0618|consen  455 ---KVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLNN  511 (1081)
T ss_pred             ---eEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccCC
Confidence               8899999998733 2322222789999999997333444567777777777777663

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=6.9e-35  Score=318.44  Aligned_cols=465  Identities=25%  Similarity=0.349  Sum_probs=249.6

Q ss_pred             CCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCe
Q 045139          114 LQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEY  193 (820)
Q Consensus       114 l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~  193 (820)
                      .-+|+.||+++|.++.  .|..|..+.+|+.|+++.|.+. .+|.+.+++.+|++|.|..|  .....+..+..+++|++
T Consensus        44 ~v~L~~l~lsnn~~~~--fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n--~l~~lP~~~~~lknl~~  118 (1081)
T KOG0618|consen   44 RVKLKSLDLSNNQISS--FPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNN--RLQSLPASISELKNLQY  118 (1081)
T ss_pred             eeeeEEeecccccccc--CCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccc--hhhcCchhHHhhhcccc
Confidence            3347777777776654  6666777777777777777766 66666777777777777766  34444555566666666


Q ss_pred             eeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEE
Q 045139          194 VRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYL  273 (820)
Q Consensus       194 L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L  273 (820)
                      |++++|.+..   +|..+..+..++.+..++|....       .++.  ..++.+++..|.+.+.++.++..+. .  .|
T Consensus       119 LdlS~N~f~~---~Pl~i~~lt~~~~~~~s~N~~~~-------~lg~--~~ik~~~l~~n~l~~~~~~~i~~l~-~--~l  183 (1081)
T KOG0618|consen  119 LDLSFNHFGP---IPLVIEVLTAEEELAASNNEKIQ-------RLGQ--TSIKKLDLRLNVLGGSFLIDIYNLT-H--QL  183 (1081)
T ss_pred             cccchhccCC---CchhHHhhhHHHHHhhhcchhhh-------hhcc--ccchhhhhhhhhcccchhcchhhhh-e--ee
Confidence            6666666654   34445555555555555552111       1111  2244455555555554444443333 1  35


Q ss_pred             EccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcC
Q 045139          274 DLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLN  353 (820)
Q Consensus       274 ~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~  353 (820)
                      ||++|.+. ...   +.++.+|+.+....|+++.+..   ..+                             +++.|+.+
T Consensus       184 dLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~~---~g~-----------------------------~l~~L~a~  227 (1081)
T KOG0618|consen  184 DLRYNEME-VLD---LSNLANLEVLHCERNQLSELEI---SGP-----------------------------SLTALYAD  227 (1081)
T ss_pred             ecccchhh-hhh---hhhccchhhhhhhhcccceEEe---cCc-----------------------------chheeeec
Confidence            55555443 111   3344444444444444442211   122                             45555555


Q ss_pred             CCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEe
Q 045139          354 SNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLD  433 (820)
Q Consensus       354 ~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~  433 (820)
                      +|.+....+. ....+|+++          ++++|+++ .+|++++.+.+|+.++..+|+++. +|. .+....+|+.|.
T Consensus       228 ~n~l~~~~~~-p~p~nl~~~----------dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~-lp~-ri~~~~~L~~l~  293 (1081)
T KOG0618|consen  228 HNPLTTLDVH-PVPLNLQYL----------DISHNNLS-NLPEWIGACANLEALNANHNRLVA-LPL-RISRITSLVSLS  293 (1081)
T ss_pred             cCcceeeccc-cccccceee----------ecchhhhh-cchHHHHhcccceEecccchhHHh-hHH-HHhhhhhHHHHH
Confidence            5555422211 112233333          33344444 345777777777777777777754 444 455666777777


Q ss_pred             CcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCC-CcEEEEcCCCcC
Q 045139          434 LSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSP-NLYYLNLSHNHF  512 (820)
Q Consensus       434 Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~-~L~~L~ls~n~l  512 (820)
                      +.+|.+.                         .+|......+.|+.|++..|++. ..|+.++.... .+..++.+.|++
T Consensus       294 ~~~nel~-------------------------yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l  347 (1081)
T KOG0618|consen  294 AAYNELE-------------------------YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKL  347 (1081)
T ss_pred             hhhhhhh-------------------------hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccc
Confidence            7777663                         45555666677777777777774 33443333222 366666666666


Q ss_pred             CCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccCcccc
Q 045139          513 TGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSK  592 (820)
Q Consensus       513 ~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~  592 (820)
                      .......-.....+ +.|.+.+|.++...-+.+....                      +|+.|+|++|++.......+.
T Consensus       348 ~~lp~~~e~~~~~L-q~LylanN~Ltd~c~p~l~~~~----------------------hLKVLhLsyNrL~~fpas~~~  404 (1081)
T KOG0618|consen  348 STLPSYEENNHAAL-QELYLANNHLTDSCFPVLVNFK----------------------HLKVLHLSYNRLNSFPASKLR  404 (1081)
T ss_pred             cccccccchhhHHH-HHHHHhcCcccccchhhhcccc----------------------ceeeeeecccccccCCHHHHh
Confidence            53321111111122 4455555555543222222211                      566666666666533334556


Q ss_pred             cCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccc-cCcchhcCCCCcc
Q 045139          593 NWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGI-IPAWIGDSLPDLV  671 (820)
Q Consensus       593 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~~l~~L~  671 (820)
                      ++..|++|+||+|+++ .+|..+..+..|++|...+|++. ..| .+..++.|+.+|+|.|+++.. +|....  .++|+
T Consensus       405 kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p--~p~Lk  479 (1081)
T KOG0618|consen  405 KLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP--SPNLK  479 (1081)
T ss_pred             chHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC--Ccccc
Confidence            6666666666666666 56666666666666666666665 455 566666666666666666532 222221  25666


Q ss_pred             EEEcCcccccccCCcccCCCCCCCEEeCcCC
Q 045139          672 VLSLRSNNFHGRVPVQVCHLQRIQVLDLSQN  702 (820)
Q Consensus       672 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  702 (820)
                      +||+++|.-....-..+..+..+...++.-|
T Consensus       480 yLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  480 YLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             eeeccCCcccccchhhhHHhhhhhheecccC
Confidence            6666666633233344444555555555544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.3e-33  Score=294.23  Aligned_cols=130  Identities=25%  Similarity=0.406  Sum_probs=76.9

Q ss_pred             CCcEEEccCCcccC-CCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCc
Q 045139          269 SLVYLDLSSNKLQG-PIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTL  347 (820)
Q Consensus       269 ~L~~L~Ls~n~l~g-~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L  347 (820)
                      -.+-.|+++|.++| ..|.. ...+++++.|.|...++..+|+.++.+.+|++|.+++|++....               
T Consensus         8 FVrGvDfsgNDFsg~~FP~~-v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vh---------------   71 (1255)
T KOG0444|consen    8 FVRGVDFSGNDFSGDRFPHD-VEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVH---------------   71 (1255)
T ss_pred             eeecccccCCcCCCCcCchh-HHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhh---------------
Confidence            45566777777774 45555 66777777777777777777777777777777766666665432               


Q ss_pred             cEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCC
Q 045139          348 EILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLS  427 (820)
Q Consensus       348 ~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~  427 (820)
                                    -.++.++.|+.+.+.+|+++         ..-+|..+.++..|+.|||++|+++. +|. .+.+-+
T Consensus        72 --------------GELs~Lp~LRsv~~R~N~LK---------nsGiP~diF~l~dLt~lDLShNqL~E-vP~-~LE~AK  126 (1255)
T KOG0444|consen   72 --------------GELSDLPRLRSVIVRDNNLK---------NSGIPTDIFRLKDLTILDLSHNQLRE-VPT-NLEYAK  126 (1255)
T ss_pred             --------------hhhccchhhHHHhhhccccc---------cCCCCchhcccccceeeecchhhhhh-cch-hhhhhc
Confidence                          22333444444444333332         11345556666666666666666654 444 455555


Q ss_pred             CCCEEeCcCCcc
Q 045139          428 RLTYLDLSHNSL  439 (820)
Q Consensus       428 ~L~~L~Ls~n~l  439 (820)
                      ++..|+||+|+|
T Consensus       127 n~iVLNLS~N~I  138 (1255)
T KOG0444|consen  127 NSIVLNLSYNNI  138 (1255)
T ss_pred             CcEEEEcccCcc
Confidence            555666666555

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=2.7e-33  Score=291.94  Aligned_cols=370  Identities=30%  Similarity=0.403  Sum_probs=224.3

Q ss_pred             cCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCC
Q 045139          112 IGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFL  191 (820)
Q Consensus       112 ~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L  191 (820)
                      +-++..|-.|+++|.++|..+|.....+++++.|.|...++. .+|+.++.|.+|++|.+++|.  ...           
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~--L~~-----------   69 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQ--LIS-----------   69 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhh--hHh-----------
Confidence            345566777888888887778888888999999999888888 888888888888888888881  111           


Q ss_pred             CeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCC-CCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCC
Q 045139          192 EYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPS-VIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSL  270 (820)
Q Consensus       192 ~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L  270 (820)
                                     +...+..+|.|+.+.+..|++.. -+|   ..+..+ ..|+.||||.|++. ..|..+-... ++
T Consensus        70 ---------------vhGELs~Lp~LRsv~~R~N~LKnsGiP---~diF~l-~dLt~lDLShNqL~-EvP~~LE~AK-n~  128 (1255)
T KOG0444|consen   70 ---------------VHGELSDLPRLRSVIVRDNNLKNSGIP---TDIFRL-KDLTILDLSHNQLR-EVPTNLEYAK-NS  128 (1255)
T ss_pred             ---------------hhhhhccchhhHHHhhhccccccCCCC---chhccc-ccceeeecchhhhh-hcchhhhhhc-Cc
Confidence                           22233444444444444444421 122   233344 45555555555554 3444443333 56


Q ss_pred             cEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEE
Q 045139          271 VYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEIL  350 (820)
Q Consensus       271 ~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L  350 (820)
                      -.|+|++|+|. .||...|.+++.|-.||||+|++..+|+.+..+..|++|.|++|.+....-.                
T Consensus       129 iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr----------------  191 (1255)
T KOG0444|consen  129 IVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLR----------------  191 (1255)
T ss_pred             EEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHh----------------
Confidence            66666666666 6666666666666666666666666666666666666666655554321100                


Q ss_pred             EcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCC
Q 045139          351 QLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLT  430 (820)
Q Consensus       351 ~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~  430 (820)
                                  .+..+++|+.|++++.+=         --..+|.++..+.+|..+|++.|.+.- +|+ .+-++++|+
T Consensus       192 ------------QLPsmtsL~vLhms~TqR---------Tl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPe-cly~l~~Lr  248 (1255)
T KOG0444|consen  192 ------------QLPSMTSLSVLHMSNTQR---------TLDNIPTSLDDLHNLRDVDLSENNLPI-VPE-CLYKLRNLR  248 (1255)
T ss_pred             ------------cCccchhhhhhhcccccc---------hhhcCCCchhhhhhhhhccccccCCCc-chH-HHhhhhhhh
Confidence                        122233444443332111         111345555555555556665555543 333 344444444


Q ss_pred             EEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcCCC
Q 045139          431 YLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHN  510 (820)
Q Consensus       431 ~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n  510 (820)
                      .|+||+|+++                                                                      
T Consensus       249 rLNLS~N~it----------------------------------------------------------------------  258 (1255)
T KOG0444|consen  249 RLNLSGNKIT----------------------------------------------------------------------  258 (1255)
T ss_pred             eeccCcCcee----------------------------------------------------------------------
Confidence            4444444432                                                                      


Q ss_pred             cCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccCcc
Q 045139          511 HFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNC  590 (820)
Q Consensus       511 ~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~  590 (820)
                         ..-.. ...+                                             .  ++++|++|.|+++ .+|++
T Consensus       259 ---eL~~~-~~~W---------------------------------------------~--~lEtLNlSrNQLt-~LP~a  286 (1255)
T KOG0444|consen  259 ---ELNMT-EGEW---------------------------------------------E--NLETLNLSRNQLT-VLPDA  286 (1255)
T ss_pred             ---eeecc-HHHH---------------------------------------------h--hhhhhccccchhc-cchHH
Confidence               10000 0000                                             0  5677777777776 67777


Q ss_pred             cccCCCCcEEEcCCCeee-ecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCC
Q 045139          591 SKNWQKLTVLNLANNKFS-GKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPD  669 (820)
Q Consensus       591 ~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~  669 (820)
                      +..++.|+.|.+.+|+++ .-+|+.++.+.+|+.+..++|.+. ..|+++..|..|+.|.|++|++. .+|+.+. -++.
T Consensus       287 vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIH-lL~~  363 (1255)
T KOG0444|consen  287 VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIH-LLPD  363 (1255)
T ss_pred             HhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhh-hcCC
Confidence            777777777777777764 246777777777777777777776 67778888888888888888876 7777776 6778


Q ss_pred             ccEEEcCccccc
Q 045139          670 LVVLSLRSNNFH  681 (820)
Q Consensus       670 L~~L~L~~N~l~  681 (820)
                      |+.||+..|+-.
T Consensus       364 l~vLDlreNpnL  375 (1255)
T KOG0444|consen  364 LKVLDLRENPNL  375 (1255)
T ss_pred             cceeeccCCcCc
Confidence            888888877754

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=6.7e-25  Score=218.88  Aligned_cols=52  Identities=33%  Similarity=0.412  Sum_probs=46.5

Q ss_pred             eEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCC
Q 045139          759 VKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKN  814 (820)
Q Consensus       759 L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N  814 (820)
                      .+++++.+|.++ .+| +  .+.+| .+|+|+|+++..--..|.++++|.+|-+|+|
T Consensus       446 ~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  446 VTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            378999999998 888 7  67788 9999999999777788999999999999997

>PLN03210 Resistant to P

Probab=99.88  E-value=2.8e-21  Score=237.84  Aligned_cols=347  Identities=22%  Similarity=0.278  Sum_probs=239.4

Q ss_pred             hhhhccCCCcEEEcCCCCC------CCcchhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEE
Q 045139          310 KSFRNLCRLRALYQDSNNL------TDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVL  383 (820)
Q Consensus       310 ~~l~~l~~L~~L~L~~n~l------~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L  383 (820)
                      ..|.++++|+.|.+..+..      ...+|..|..++.    +|+.|++.++.+. .+|....+.+|++|++.++.++  
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~----~Lr~L~~~~~~l~-~lP~~f~~~~L~~L~L~~s~l~--  624 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPP----KLRLLRWDKYPLR-CMPSNFRPENLVKLQMQGSKLE--  624 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCc----ccEEEEecCCCCC-CCCCcCCccCCcEEECcCcccc--
Confidence            3577788888887765532      2345666666553    6888888888776 4454224567776665554444  


Q ss_pred             EccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccC
Q 045139          384 YLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQ  463 (820)
Q Consensus       384 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~  463 (820)
                               .++..+..+++|+.|+++++...+.+|.  +..+++|++|++++|.....+|..+..+.+|+.|++++|..
T Consensus       625 ---------~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~  693 (1153)
T PLN03210        625 ---------KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN  693 (1153)
T ss_pred             ---------ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCC
Confidence                     3455667778888888887664455664  67778888888888776666777777777777777777766


Q ss_pred             CCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCC
Q 045139          464 GPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPP  543 (820)
Q Consensus       464 ~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~  543 (820)
                      .+.+|..+ .+++|+.|++++|...+.+|..    .++|+.|++++|.+.. +|..+ .+..+ ..|.+.++.... ++.
T Consensus       694 L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~~-lP~~~-~l~~L-~~L~l~~~~~~~-l~~  764 (1153)
T PLN03210        694 LEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIEE-FPSNL-RLENL-DELILCEMKSEK-LWE  764 (1153)
T ss_pred             cCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCcccc-ccccc-ccccc-ccccccccchhh-ccc
Confidence            66666654 5777777777777665555542    2467777777777653 33321 23333 444444322110 000


Q ss_pred             CCCcceEEeccCcccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcE
Q 045139          544 IPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLS  623 (820)
Q Consensus       544 ~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  623 (820)
                      ....+             .+.. .....+|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ .+++|+.
T Consensus       765 ~~~~l-------------~~~~-~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~  829 (1153)
T PLN03210        765 RVQPL-------------TPLM-TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLES  829 (1153)
T ss_pred             ccccc-------------chhh-hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCE
Confidence            00000             0000 0011279999999998888899999999999999999987666788776 7899999


Q ss_pred             EeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCC
Q 045139          624 LHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNN  703 (820)
Q Consensus       624 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  703 (820)
                      |++++|.....+|..   .++|++|+|++|.++ .+|.++. .+++|++|++++|+-...+|..+..+++|+.+++++|.
T Consensus       830 L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~-~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        830 LDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIE-KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             EECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHh-cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            999999877666654   367999999999998 7899987 79999999999966555688888999999999999885

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.88  E-value=4.1e-21  Score=236.38  Aligned_cols=331  Identities=21%  Similarity=0.270  Sum_probs=182.9

Q ss_pred             chhhhhhcccCCcCCccEEEcCCCCC------cccCCC-CcCcC-CCcEEecCCCcccEEEccCCcccccccccccCCCC
Q 045139          332 LPNLFLKLSNCSRDTLEILQLNSNML------RGSLPD-ITLFS-SLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQ  403 (820)
Q Consensus       332 ~~~~~~~l~~~~~~~L~~L~L~~n~l------~~~~p~-~~~l~-~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~  403 (820)
                      .+.+|..+.     +|+.|.+..+..      ...+|. +..++ +|+.|++.++.++           .+|..+ ...+
T Consensus       550 ~~~aF~~m~-----~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-----------~lP~~f-~~~~  612 (1153)
T PLN03210        550 HENAFKGMR-----NLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-----------CMPSNF-RPEN  612 (1153)
T ss_pred             cHHHHhcCc-----cccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-----------CCCCcC-CccC
Confidence            345566666     777777765532      223333 33332 4555544433332           455555 4567


Q ss_pred             CCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecC
Q 045139          404 LELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVS  483 (820)
Q Consensus       404 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  483 (820)
                      |+.|++.+|++.. ++. .+..+++|+.|+++++.....+| .+...++|+.|++.+|.....+|..+..+++|+.|+++
T Consensus       613 L~~L~L~~s~l~~-L~~-~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~  689 (1153)
T PLN03210        613 LVKLQMQGSKLEK-LWD-GVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS  689 (1153)
T ss_pred             CcEEECcCccccc-ccc-ccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence            7788888777764 443 35677778888887766544444 35556677777777777666777777777777777777


Q ss_pred             CCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccc
Q 045139          484 AAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLS  563 (820)
Q Consensus       484 ~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~  563 (820)
                      +|...+.+|..+  .+++|+.|++++|...+.+|...   ..+ +.|++++|.+. .+|... .+               
T Consensus       690 ~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~~---~nL-~~L~L~~n~i~-~lP~~~-~l---------------  746 (1153)
T PLN03210        690 RCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDIS---TNI-SWLDLDETAIE-EFPSNL-RL---------------  746 (1153)
T ss_pred             CCCCcCccCCcC--CCCCCCEEeCCCCCCcccccccc---CCc-CeeecCCCccc-cccccc-cc---------------
Confidence            765555666543  23566667766665444444321   122 44444444432 222211 00               


Q ss_pred             hhhccccccccEEEccCCcc-------ccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCC
Q 045139          564 FLCQISDEHFRYLDLSDNLL-------SGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELP  636 (820)
Q Consensus       564 ~~~~~~~~~L~~L~Ls~n~l-------~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  636 (820)
                             .+|+.|++.++..       ....+......++|+.|++++|...+.+|..++.+++|+.|++++|...+.+|
T Consensus       747 -------~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP  819 (1153)
T PLN03210        747 -------ENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP  819 (1153)
T ss_pred             -------cccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence                   0444444443221       11111122233566666666666555666666666666666666665555555


Q ss_pred             cchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccc
Q 045139          637 SSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLT  716 (820)
Q Consensus       637 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  716 (820)
                      ..+ ++++|+.|++++|.....+|..    .++|+.|+|++|.+. .+|..+..+++|+.|++++|+-...+|..+..++
T Consensus       820 ~~~-~L~sL~~L~Ls~c~~L~~~p~~----~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~  893 (1153)
T PLN03210        820 TGI-NLESLESLDLSGCSRLRTFPDI----STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLK  893 (1153)
T ss_pred             CCC-CccccCEEECCCCCcccccccc----ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccccccc
Confidence            544 5666666666665544444432    345666666666665 4566666666666666666433334555544444


Q ss_pred             cc
Q 045139          717 AM  718 (820)
Q Consensus       717 ~L  718 (820)
                      .|
T Consensus       894 ~L  895 (1153)
T PLN03210        894 HL  895 (1153)
T ss_pred             CC
Confidence            44

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=2.4e-21  Score=220.71  Aligned_cols=258  Identities=24%  Similarity=0.368  Sum_probs=147.0

Q ss_pred             ccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCc
Q 045139          477 FSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKN  556 (820)
Q Consensus       477 L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n  556 (820)
                      -..|+++++.++ .+|..+.   ++|+.|++++|+++. +|..   .+.+ +.|++++|+++. +|..+.+++.|++..|
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~l---p~~L-k~LdLs~N~Lts-LP~lp~sL~~L~Ls~N  272 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPAL---PPEL-RTLEVSGNQLTS-LPVLPPGLLELSIFSN  272 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCCC---CCCC-cEEEecCCccCc-ccCcccccceeeccCC
Confidence            344555555554 3444332   245555555555553 2221   1233 555555555552 3444555556666665


Q ss_pred             ccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCC
Q 045139          557 MFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELP  636 (820)
Q Consensus       557 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  636 (820)
                      .+..... ..    ..|+.|++++|+++ .+|..   .++|+.|++++|++++ +|..   ..+|+.|++++|++++ +|
T Consensus       273 ~L~~Lp~-lp----~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP  338 (788)
T PRK15387        273 PLTHLPA-LP----SGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LP  338 (788)
T ss_pred             chhhhhh-ch----hhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-cc
Confidence            5543211 11    15667777777776 34432   3567777777777764 4432   2346667777777763 44


Q ss_pred             cchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccc
Q 045139          637 SSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLT  716 (820)
Q Consensus       637 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  716 (820)
                      ..   ..+|++|+|++|+|+ .+|..    .++|+.|++++|+++ .+|..   ..+|+.|++++|+++ .+|...   +
T Consensus       339 ~l---p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l~---s  402 (788)
T PRK15387        339 TL---PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVLP---S  402 (788)
T ss_pred             cc---ccccceEecCCCccC-CCCCC----Ccccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCcc---c
Confidence            31   136777777777776 45542    345666777777776 35543   245777777777776 344322   1


Q ss_pred             cccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCccccCC
Q 045139          717 AMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPI  796 (820)
Q Consensus       717 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~~i  796 (820)
                      .|                                         +.||+++|+++ .+|.+  ..+|+.|++++|+++ .+
T Consensus       403 ~L-----------------------------------------~~LdLS~N~Ls-sIP~l--~~~L~~L~Ls~NqLt-~L  437 (788)
T PRK15387        403 EL-----------------------------------------KELMVSGNRLT-SLPML--PSGLLSLSVYRNQLT-RL  437 (788)
T ss_pred             CC-----------------------------------------CEEEccCCcCC-CCCcc--hhhhhhhhhccCccc-cc
Confidence            22                                         66777777776 46622  235666777777776 56


Q ss_pred             cccccCCCCCCeEeCCCCcCccc
Q 045139          797 PSKIGGLTLLNSLDLSKNMLMRA  819 (820)
Q Consensus       797 p~~l~~l~~L~~LdLs~N~l~g~  819 (820)
                      |+.+.++++|+.|||++|+|+|.
T Consensus       438 P~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        438 PESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             ChHHhhccCCCeEECCCCCCCch
Confidence            77777777777777777777764

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.86  E-value=1e-23  Score=210.43  Aligned_cols=390  Identities=25%  Similarity=0.280  Sum_probs=195.3

Q ss_pred             CCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCc-chhhhccCCCcEEEcCC-CCCCCcchhhhhhcccCCcC
Q 045139          268 SSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSV-PKSFRNLCRLRALYQDS-NNLTDLLPNLFLKLSNCSRD  345 (820)
Q Consensus       268 ~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~i-p~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~~~~~  345 (820)
                      +.-+.++|..|+|+ .||+++|+.+++|+.|||++|.|+.| |+.|.++++|..|.+.+ |+|+......|+++.     
T Consensus        67 ~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~-----  140 (498)
T KOG4237|consen   67 PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS-----  140 (498)
T ss_pred             CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH-----
Confidence            36677778888887 77877788888888888888888866 56677777776666655 777777777777777     


Q ss_pred             CccEEEcCCCCCcccCCC-CcCcCCCcEEecCCCcccEEEccCCcccccccc-cccCCCCCCEEecCCCcCccccCHHHh
Q 045139          346 TLEILQLNSNMLRGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTK-SIGQLSQLELLDVASNSLKGMITEAHL  423 (820)
Q Consensus       346 ~L~~L~L~~n~l~~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~l  423 (820)
                      .++.|.+..|++...... +..++++..|.+.+|.++           .++. .|..+..++.+.+..|.+..      .
T Consensus       141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-----------~i~~~tf~~l~~i~tlhlA~np~ic------d  203 (498)
T KOG4237|consen  141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-----------SICKGTFQGLAAIKTLHLAQNPFIC------D  203 (498)
T ss_pred             HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-----------hhccccccchhccchHhhhcCcccc------c
Confidence            677777777777654444 555556655555544443           2222 45555555666555555321      1


Q ss_pred             hcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcC-CCccEEecCCCCccCCCCchhhccCCCc
Q 045139          424 SNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQ-NKFSELDVSAAEISDTVPNWFWDLSPNL  502 (820)
Q Consensus       424 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~n~i~~~~p~~~~~~~~~L  502 (820)
                      .+++.+... +      ...+..+..........+...++...-+.-+... ..+..--.+.+...+.-|..-+..+++|
T Consensus       204 CnL~wla~~-~------a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L  276 (498)
T KOG4237|consen  204 CNLPWLADD-L------AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNL  276 (498)
T ss_pred             cccchhhhH-H------hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccc
Confidence            111111110 0      0011111122222222222222222222211111 1111111223334445555445555677


Q ss_pred             EEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCc
Q 045139          503 YYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNL  582 (820)
Q Consensus       503 ~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~  582 (820)
                      +.|++++|+++++-+..|.....+ ++|.+..|++.-.-...+..+.                      .|+.|+|.+|+
T Consensus       277 ~~lnlsnN~i~~i~~~aFe~~a~l-~eL~L~~N~l~~v~~~~f~~ls----------------------~L~tL~L~~N~  333 (498)
T KOG4237|consen  277 RKLNLSNNKITRIEDGAFEGAAEL-QELYLTRNKLEFVSSGMFQGLS----------------------GLKTLSLYDNQ  333 (498)
T ss_pred             eEeccCCCccchhhhhhhcchhhh-hhhhcCcchHHHHHHHhhhccc----------------------cceeeeecCCe
Confidence            777777777776666655544443 4444444433211111111111                      45555555555


Q ss_pred             cccccCcccccCCCCcEEEcCCCeeeec-CCCCc---------------ccccCCcEEeccCCcccc---cCCcch----
Q 045139          583 LSGELPNCSKNWQKLTVLNLANNKFSGK-IPDSM---------------DFNCMMLSLHLRNNSFIG---ELPSSV----  639 (820)
Q Consensus       583 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l---------------~~l~~L~~L~Ls~N~l~~---~~p~~l----  639 (820)
                      |+..-|.+|..+.+|..|++-.|.+.=. --.++               +....++.+.++...+..   ..|+..    
T Consensus       334 it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~  413 (498)
T KOG4237|consen  334 ITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLT  413 (498)
T ss_pred             eEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCC
Confidence            5555555555555555555555543200 00000               011123333333333221   011111    


Q ss_pred             -----hcCCCCCE-EECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhcc
Q 045139          640 -----KSFTQLTV-LDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLN  713 (820)
Q Consensus       640 -----~~l~~L~~-L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  713 (820)
                           ..++-+.+ ...|+..++ .+|..+.   ..-.+|++.+|.++ .+|..  .+.+| .+|+++|+++..--..|.
T Consensus       414 s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP---~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~  485 (498)
T KOG4237|consen  414 SSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP---VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFS  485 (498)
T ss_pred             CCCCCCCcchhhhhHhhcccchh-hcCCCCC---chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhccccc
Confidence                 11111221 122222222 4444332   24567888889888 67766  57778 889999998855555666


Q ss_pred             ccccc
Q 045139          714 NLTAM  718 (820)
Q Consensus       714 ~l~~L  718 (820)
                      +++.+
T Consensus       486 n~tql  490 (498)
T KOG4237|consen  486 NMTQL  490 (498)
T ss_pred             chhhh
Confidence            76666

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=1.9e-20  Score=213.42  Aligned_cols=279  Identities=25%  Similarity=0.388  Sum_probs=193.8

Q ss_pred             hhhcccCCcCCccEEEcCCCCCcccCCC-CcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcC
Q 045139          336 FLKLSNCSRDTLEILQLNSNMLRGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSL  414 (820)
Q Consensus       336 ~~~l~~~~~~~L~~L~L~~n~l~~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  414 (820)
                      ...+..|-...-..|+++.|.++ .+|. +.  ++|+.|.+.+|++          + .+|.   .+++|++|++++|++
T Consensus       192 ~~r~~~Cl~~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~L----------t-~LP~---lp~~Lk~LdLs~N~L  254 (788)
T PRK15387        192 VQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNL----------T-SLPA---LPPELRTLEVSGNQL  254 (788)
T ss_pred             HHHHHHHhcCCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcC----------C-CCCC---CCCCCcEEEecCCcc
Confidence            44444555456788999999888 4555 43  3566665554444          3 2343   246788888888888


Q ss_pred             ccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCch
Q 045139          415 KGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNW  494 (820)
Q Consensus       415 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~  494 (820)
                      +. +|.    ..++|+.|++++|.+.                         .+|..   ..+|+.|++++|+++. +|..
T Consensus       255 ts-LP~----lp~sL~~L~Ls~N~L~-------------------------~Lp~l---p~~L~~L~Ls~N~Lt~-LP~~  300 (788)
T PRK15387        255 TS-LPV----LPPGLLELSIFSNPLT-------------------------HLPAL---PSGLCKLWIFGNQLTS-LPVL  300 (788)
T ss_pred             Cc-ccC----cccccceeeccCCchh-------------------------hhhhc---hhhcCEEECcCCcccc-cccc
Confidence            75 443    2357778888887764                         22221   2457778888888763 4432


Q ss_pred             hhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhcccccccc
Q 045139          495 FWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFR  574 (820)
Q Consensus       495 ~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~  574 (820)
                          +++|+.|++++|++++. |...   ..+ ..|++++|.+++ +|..+.                         +|+
T Consensus       301 ----p~~L~~LdLS~N~L~~L-p~lp---~~L-~~L~Ls~N~L~~-LP~lp~-------------------------~Lq  345 (788)
T PRK15387        301 ----PPGLQELSVSDNQLASL-PALP---SEL-CKLWAYNNQLTS-LPTLPS-------------------------GLQ  345 (788)
T ss_pred             ----ccccceeECCCCccccC-CCCc---ccc-cccccccCcccc-cccccc-------------------------ccc
Confidence                35788888888888763 3211   122 556666666653 333221                         788


Q ss_pred             EEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCc
Q 045139          575 YLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNK  654 (820)
Q Consensus       575 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  654 (820)
                      .|++++|++++ +|..   .++|+.|++++|++.+ +|..   ..+|+.|++++|++++ +|..   .++|+.|++++|+
T Consensus       346 ~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~  413 (788)
T PRK15387        346 ELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNR  413 (788)
T ss_pred             eEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCc
Confidence            89999999884 5543   3578888999999884 6653   3578999999999985 5543   3579999999999


Q ss_pred             CccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccc
Q 045139          655 ISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAM  718 (820)
Q Consensus       655 l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  718 (820)
                      ++ .+|..    ..+|+.|++++|+++ .+|..++.+++|+.|+|++|++++.+|..+..+...
T Consensus       414 Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~s~  471 (788)
T PRK15387        414 LT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSA  471 (788)
T ss_pred             CC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHhcC
Confidence            98 57754    347888999999998 789999999999999999999999888887665544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=5.5e-19  Score=203.04  Aligned_cols=120  Identities=22%  Similarity=0.352  Sum_probs=72.1

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      +|+.|++++|+++. +|..+.  ++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|+++
T Consensus       305 sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs  375 (754)
T PRK15370        305 GITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVS  375 (754)
T ss_pred             hHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECC
Confidence            45666677777663 443332  567777777777764 555443  56777777777766 3554442  467777777


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccccCCccc----CCCCCCCEEeCcCCCCc
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV----CHLQRIQVLDLSQNNIS  705 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l----~~l~~L~~L~Ls~N~l~  705 (820)
                      +|+++ .+|..+.   ..|+.|++++|++. .+|..+    ..++.+..+++.+|+++
T Consensus       376 ~N~Lt-~LP~~l~---~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        376 RNALT-NLPENLP---AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CCcCC-CCCHhHH---HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            77776 4565543   25666777777666 344332    33456666667666665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=1.6e-18  Score=199.26  Aligned_cols=245  Identities=24%  Similarity=0.410  Sum_probs=142.4

Q ss_pred             CCccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCC-CCcceEEec
Q 045139          475 NKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPI-PLTVTSLIL  553 (820)
Q Consensus       475 ~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~-~~~l~~l~l  553 (820)
                      .+.+.|+++++.++. +|..+   .+.++.|++++|+++.. |..+  ...+ +.|++++|+++. +|.. +.       
T Consensus       178 ~~~~~L~L~~~~Lts-LP~~I---p~~L~~L~Ls~N~LtsL-P~~l--~~nL-~~L~Ls~N~Lts-LP~~l~~-------  241 (754)
T PRK15370        178 NNKTELRLKILGLTT-IPACI---PEQITTLILDNNELKSL-PENL--QGNI-KTLYANSNQLTS-IPATLPD-------  241 (754)
T ss_pred             cCceEEEeCCCCcCc-CCccc---ccCCcEEEecCCCCCcC-Chhh--ccCC-CEEECCCCcccc-CChhhhc-------
Confidence            356788888888764 56544   25788889988888854 3322  1344 777777777763 3432 22       


Q ss_pred             cCcccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccc
Q 045139          554 FKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIG  633 (820)
Q Consensus       554 ~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  633 (820)
                                        +|+.|++++|++. .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|++++
T Consensus       242 ------------------~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~  297 (754)
T PRK15370        242 ------------------TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT  297 (754)
T ss_pred             ------------------cccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc
Confidence                              4566666666665 4554443  35666666666666 3454443  356666666666663


Q ss_pred             cCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhcc
Q 045139          634 ELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLN  713 (820)
Q Consensus       634 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  713 (820)
                       +|..+.  ++|+.|++++|+++ .+|..+   .++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+.
T Consensus       298 -LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp  366 (754)
T PRK15370        298 -LPAHLP--SGITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP  366 (754)
T ss_pred             -Ccccch--hhHHHHHhcCCccc-cCCccc---cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc
Confidence             343332  35666666666666 355443   2466666666666663 554443  56666666666665 3454332


Q ss_pred             ccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCcc
Q 045139          714 NLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSL  792 (820)
Q Consensus       714 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l  792 (820)
                        +.|                                         +.|||++|+|+ .+| .+.  ..|+.|++++|++
T Consensus       367 --~~L-----------------------------------------~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L  400 (754)
T PRK15370        367 --PTI-----------------------------------------TTLDVSRNALT-NLPENLP--AALQIMQASRNNL  400 (754)
T ss_pred             --CCc-----------------------------------------CEEECCCCcCC-CCCHhHH--HHHHHHhhccCCc
Confidence              122                                         56666666666 445 443  2466666666666


Q ss_pred             ccCCcccc----cCCCCCCeEeCCCCcCc
Q 045139          793 TGPIPSKI----GGLTLLNSLDLSKNMLM  817 (820)
Q Consensus       793 ~~~ip~~l----~~l~~L~~LdLs~N~l~  817 (820)
                      + .+|..+    +.++.+..|++.+|+++
T Consensus       401 ~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        401 V-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             c-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            6 344332    33455666666666664

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=1.4e-18  Score=186.16  Aligned_cols=283  Identities=20%  Similarity=0.231  Sum_probs=183.0

Q ss_pred             eeecccccCC-CCCchhhhcCCCccEEecCCCCccCC----CCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCc
Q 045139          455 IIRLGACKQG-PQFPKWLQTQNKFSELDVSAAEISDT----VPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPE  529 (820)
Q Consensus       455 ~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~n~i~~~----~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~  529 (820)
                      .|+|..+.+. ......+..+..|++++++++.+++.    ++..+. ..+++++++++++.+.+. +.....       
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~-~~~~l~~l~l~~~~~~~~-~~~~~~-------   72 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALR-PQPSLKELCLSLNETGRI-PRGLQS-------   72 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHh-hCCCceEEeccccccCCc-chHHHH-------
Confidence            3556666665 44556667777788888888877543    222222 224577777777665431 110000       


Q ss_pred             eeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccCcccccCCC---CcEEEcCCCe
Q 045139          530 IDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQK---LTVLNLANNK  606 (820)
Q Consensus       530 l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~---L~~L~Ls~N~  606 (820)
                                 ++..+.                    .  ..+|+.|++++|.+.+..+..+..+..   |++|++++|+
T Consensus        73 -----------~~~~l~--------------------~--~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~  119 (319)
T cd00116          73 -----------LLQGLT--------------------K--GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG  119 (319)
T ss_pred             -----------HHHHHH--------------------h--cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc
Confidence                       000000                    0  116788888888877655555555555   8888888888


Q ss_pred             eee----cCCCCcccc-cCCcEEeccCCcccc----cCCcchhcCCCCCEEECCCCcCccc----cCcchhcCCCCccEE
Q 045139          607 FSG----KIPDSMDFN-CMMLSLHLRNNSFIG----ELPSSVKSFTQLTVLDLGHNKISGI----IPAWIGDSLPDLVVL  673 (820)
Q Consensus       607 l~~----~~p~~l~~l-~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~~l~~L~~L  673 (820)
                      +++    .+...+..+ ++|+.|++++|.+++    .++..+..+++|++|++++|.+++.    ++..+. ..++|+.|
T Consensus       120 ~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~-~~~~L~~L  198 (319)
T cd00116         120 LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLK-ANCNLEVL  198 (319)
T ss_pred             cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHH-hCCCCCEE
Confidence            773    233345556 788899999998874    2345567778899999999998843    333343 45689999


Q ss_pred             EcCccccccc----CCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeeccc
Q 045139          674 SLRSNNFHGR----VPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKD  749 (820)
Q Consensus       674 ~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  749 (820)
                      ++++|.+.+.    ++..+..+++|+.|++++|++++..+..+...  +                               
T Consensus       199 ~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~--~-------------------------------  245 (319)
T cd00116         199 DLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASA--L-------------------------------  245 (319)
T ss_pred             eccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHH--H-------------------------------
Confidence            9999988643    34456778899999999999886333332211  0                               


Q ss_pred             cccccccCceEEEECCCCcCe--e--cCC-CcccccCCCEEeCCCCccccC----CcccccCC-CCCCeEeCCCCcC
Q 045139          750 SEYRNTLGLVKSIDLSSNRLY--G--EIP-EVTSLVGLISLNLSKNSLTGP----IPSKIGGL-TLLNSLDLSKNML  816 (820)
Q Consensus       750 ~~~~~~l~~L~~LdLs~N~l~--~--~ip-~l~~l~~L~~L~Ls~N~l~~~----ip~~l~~l-~~L~~LdLs~N~l  816 (820)
                         ....+.|+.|++++|.++  |  .++ .+..+++|+.+++++|.++..    ....+... +.|+++|+.+|++
T Consensus       246 ---~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         246 ---LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             ---hccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence               001234589999999997  2  233 556668999999999999955    44455555 7899999999975

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.69  E-value=6.6e-19  Score=156.25  Aligned_cols=180  Identities=29%  Similarity=0.453  Sum_probs=155.5

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      +++.|.+|+|+++ .+|..+..+.+|+.|++++|++. .+|..++.++.|+.|+++-|++. ..|..|+.++.|+.|||.
T Consensus        34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt  110 (264)
T KOG0617|consen   34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT  110 (264)
T ss_pred             hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence            6788999999998 77888999999999999999998 78999999999999999999998 789999999999999999


Q ss_pred             CCcCc-cccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCccccc
Q 045139          652 HNKIS-GIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRY  730 (820)
Q Consensus       652 ~N~l~-~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~  730 (820)
                      +|++. ..+|..++ .++.|+.|+|++|.+. .+|..++++++||.|.+.+|.+. ++|..++.++.|            
T Consensus       111 ynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~l------------  175 (264)
T KOG0617|consen  111 YNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRL------------  175 (264)
T ss_pred             ccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHH------------
Confidence            99987 45888888 7999999999999998 89999999999999999999998 899999999888            


Q ss_pred             CCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccC---CCEEeCCCCccccCCccc
Q 045139          731 PLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVG---LISLNLSKNSLTGPIPSK  799 (820)
Q Consensus       731 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~---L~~L~Ls~N~l~~~ip~~  799 (820)
                                                   ++|.+.+|+++ .+| +++++.-   =+.+-+.+|.....|.+.
T Consensus       176 -----------------------------relhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQ  218 (264)
T KOG0617|consen  176 -----------------------------RELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAEQ  218 (264)
T ss_pred             -----------------------------HHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHHH
Confidence                                         78999999998 666 8877542   234455566555444443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=9.6e-19  Score=155.20  Aligned_cols=166  Identities=31%  Similarity=0.517  Sum_probs=151.8

Q ss_pred             ccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCC
Q 045139          590 CSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPD  669 (820)
Q Consensus       590 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~  669 (820)
                      .+.+++..+.|.||+|+++ .+|..++.+.+|+.|++++|++. .+|.+++.+++|+.|+++-|++. ..|..++ .++.
T Consensus        28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfg-s~p~  103 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFG-SFPA  103 (264)
T ss_pred             cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccC-CCch
Confidence            3556788899999999999 68889999999999999999998 78999999999999999999998 8999999 7999


Q ss_pred             ccEEEcCcccccc-cCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeecc
Q 045139          670 LVVLSLRSNNFHG-RVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRK  748 (820)
Q Consensus       670 L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  748 (820)
                      |++|||.+|++.. ..|..|..++.|+.|++++|.+. .+|..++++++|                              
T Consensus       104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~l------------------------------  152 (264)
T KOG0617|consen  104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNL------------------------------  152 (264)
T ss_pred             hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcce------------------------------
Confidence            9999999999874 57889999999999999999998 899999999988                              


Q ss_pred             ccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCC
Q 045139          749 DSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGL  803 (820)
Q Consensus       749 ~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l  803 (820)
                                 +.|.+..|.+- +.| +++.++.|+.|.+.+|+++ .+|..++++
T Consensus       153 -----------qil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l  195 (264)
T KOG0617|consen  153 -----------QILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL  195 (264)
T ss_pred             -----------eEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence                       88999999998 889 9999999999999999999 677777665

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.67  E-value=5.7e-18  Score=181.47  Aligned_cols=209  Identities=23%  Similarity=0.250  Sum_probs=154.5

Q ss_pred             cccEEEccCCccc------cccCcccccCCCCcEEEcCCCeeeecCCCCcccccC---CcEEeccCCcccc----cCCcc
Q 045139          572 HFRYLDLSDNLLS------GELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCM---MLSLHLRNNSFIG----ELPSS  638 (820)
Q Consensus       572 ~L~~L~Ls~n~l~------~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~---L~~L~Ls~N~l~~----~~p~~  638 (820)
                      .++.++++++.+.      ..++..+..+++|++|++++|.+.+..+..+..+..   |++|++++|++++    .+...
T Consensus        52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~  131 (319)
T cd00116          52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG  131 (319)
T ss_pred             CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence            4677777777665      234556778899999999999998766666666666   9999999999983    34445


Q ss_pred             hhcC-CCCCEEECCCCcCccc----cCcchhcCCCCccEEEcCcccccc----cCCcccCCCCCCCEEeCcCCCCccccc
Q 045139          639 VKSF-TQLTVLDLGHNKISGI----IPAWIGDSLPDLVVLSLRSNNFHG----RVPVQVCHLQRIQVLDLSQNNISGTVP  709 (820)
Q Consensus       639 l~~l-~~L~~L~Ls~N~l~~~----~p~~l~~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p  709 (820)
                      +..+ ++|++|++++|.+++.    ++..+. .+++|++|++++|.+++    .++..+..+++|+.|++++|.+++..+
T Consensus       132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  210 (319)
T cd00116         132 LKDLPPALEKLVLGRNRLEGASCEALAKALR-ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA  210 (319)
T ss_pred             HHhCCCCceEEEcCCCcCCchHHHHHHHHHH-hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence            6677 8999999999999843    333444 57789999999999984    234455667899999999999875433


Q ss_pred             hhccccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-Cccc-----ccCCC
Q 045139          710 QCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTS-----LVGLI  783 (820)
Q Consensus       710 ~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~-----l~~L~  783 (820)
                      ..+...                                     ...++.|+.||+++|++++... .+..     .+.|+
T Consensus       211 ~~l~~~-------------------------------------~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~  253 (319)
T cd00116         211 SALAET-------------------------------------LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLL  253 (319)
T ss_pred             HHHHHH-------------------------------------hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCce
Confidence            322211                                     0112345999999999986333 3322     37999


Q ss_pred             EEeCCCCccc----cCCcccccCCCCCCeEeCCCCcCcc
Q 045139          784 SLNLSKNSLT----GPIPSKIGGLTLLNSLDLSKNMLMR  818 (820)
Q Consensus       784 ~L~Ls~N~l~----~~ip~~l~~l~~L~~LdLs~N~l~g  818 (820)
                      .|++++|.++    ..++..+..+++|+++|+++|+++.
T Consensus       254 ~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         254 TLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             EEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence            9999999997    2344566777999999999999974

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03150 hypothetical protein; Provisional

Probab=99.52  E-value=6.2e-14  Score=161.28  Aligned_cols=125  Identities=34%  Similarity=0.547  Sum_probs=102.8

Q ss_pred             cCCHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCc----ccCceEecC--CC--CcEEEEEcCCCCCCCCcccccccc
Q 045139           40 KCIERERQALLMFKQGLIDEYGHLSSWGNEDDKKDCC----KWRGVSCSN--QT--GHVTMLNLQFRSYMPLRGNISSSL  111 (820)
Q Consensus        40 ~~~~~~~~~l~~~~~~~~~~~~~~~~W~~~~~~~~~c----~w~gv~c~~--~~--~~v~~L~L~~~~~~~l~g~i~~~l  111 (820)
                      .+.++|.+||.++|+++.++..  .+|.    +..||    .|.||+|..  ..  .+|+.|+|++   +.+.|.+|..+
T Consensus       368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~----g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~---n~L~g~ip~~i  438 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLGLPLR--FGWN----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN---QGLRGFIPNDI  438 (623)
T ss_pred             ccCchHHHHHHHHHHhcCCccc--CCCC----CCCCCCcccccccceeeccCCCCceEEEEEECCC---CCccccCCHHH
Confidence            4567899999999999876532  4896    44453    799999952  22  2589999998   88899999999


Q ss_pred             cCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCC
Q 045139          112 IGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFN  174 (820)
Q Consensus       112 ~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n  174 (820)
                      +++++|++|+|++|.+.+. +|..++.+++|++|+|++|.++|.+|..++++++|++|+|++|
T Consensus       439 ~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N  500 (623)
T PLN03150        439 SKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN  500 (623)
T ss_pred             hCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence            9999999999999999886 8888999999999999999999988888888888888877776

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.37  E-value=1.7e-14  Score=151.58  Aligned_cols=176  Identities=29%  Similarity=0.451  Sum_probs=142.3

Q ss_pred             ccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCC
Q 045139          573 FRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGH  652 (820)
Q Consensus       573 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  652 (820)
                      -...|++.|++. ++|..+..+..|+.+.|+.|.+. .+|.+++.+..|.+|||+.|+++ .+|..+..|+ |+.|-+++
T Consensus        77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN  152 (722)
T KOG0532|consen   77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN  152 (722)
T ss_pred             hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence            356788888887 78888888888888888888887 78888888888888888888887 6777777776 88888888


Q ss_pred             CcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCC
Q 045139          653 NKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPL  732 (820)
Q Consensus       653 N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~  732 (820)
                      |+++ .+|..++ ..+.|..||.+.|.+. .+|..++.+.+|+.|.+..|++. .+|+++..|+                
T Consensus       153 Nkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp----------------  212 (722)
T KOG0532|consen  153 NKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP----------------  212 (722)
T ss_pred             Cccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc----------------
Confidence            8887 7888887 7888888888888887 67788888888888888888887 6676666443                


Q ss_pred             ccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccc
Q 045139          733 RTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKI  800 (820)
Q Consensus       733 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l  800 (820)
                                                |..||+|+|+++ .|| .|.+|+.|++|-|.+|.+. ..|..+
T Consensus       213 --------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqI  253 (722)
T KOG0532|consen  213 --------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQI  253 (722)
T ss_pred             --------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHH
Confidence                                      267888888888 888 8888888888888888887 455544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.36  E-value=2.4e-14  Score=150.46  Aligned_cols=177  Identities=28%  Similarity=0.447  Sum_probs=159.9

Q ss_pred             ccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCcc
Q 045139          592 KNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLV  671 (820)
Q Consensus       592 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~  671 (820)
                      ..+..-...|++.|++. .+|..+..+..|+.+.|..|.+. .+|..+.++..|++|||+.|+++ ..|..++  .--|+
T Consensus        72 ~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLk  146 (722)
T KOG0532|consen   72 YDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLK  146 (722)
T ss_pred             ccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcce
Confidence            34555678899999998 79999999999999999999998 78999999999999999999998 8998887  34699


Q ss_pred             EEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeeccccc
Q 045139          672 VLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSE  751 (820)
Q Consensus       672 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  751 (820)
                      .|-+++|+++ .+|+.++.+..|..||.+.|++. .+|..++++.+|                                 
T Consensus       147 vli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl---------------------------------  191 (722)
T KOG0532|consen  147 VLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL---------------------------------  191 (722)
T ss_pred             eEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH---------------------------------
Confidence            9999999999 89999999999999999999998 889999999888                                 


Q ss_pred             cccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCcCccc
Q 045139          752 YRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLMRA  819 (820)
Q Consensus       752 ~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~g~  819 (820)
                              +.|.++.|++. ..| ++..| .|..||+|.|+++ .||-.|.+|+.|++|-|.+|+|..+
T Consensus       192 --------r~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  192 --------RDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             --------HHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence                    78999999998 666 88855 6999999999999 8999999999999999999999753

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.32  E-value=1.9e-12  Score=142.85  Aligned_cols=192  Identities=34%  Similarity=0.501  Sum_probs=112.4

Q ss_pred             EEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCccccc-CCcEEeccCCcccccCCcchhcCCCCCEEECCCC
Q 045139          575 YLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNC-MMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHN  653 (820)
Q Consensus       575 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  653 (820)
                      .++++.|.+... +..+...+.++.|++.+|.++ .+|....... +|+.|++++|++. .+|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            355555555322 223344466777777777776 4555555553 6777777777776 34455667777777777777


Q ss_pred             cCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCc
Q 045139          654 KISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLR  733 (820)
Q Consensus       654 ~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~  733 (820)
                      +++ .+|...+ ..+.|+.|++++|++. .+|..+.....|+++++++|++. .++..+.++..+               
T Consensus       174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l---------------  234 (394)
T COG4886         174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL---------------  234 (394)
T ss_pred             hhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccc---------------
Confidence            776 5555443 4667777777777776 55555555556777777777533 444555555444               


Q ss_pred             cccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCC
Q 045139          734 TDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLS  812 (820)
Q Consensus       734 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs  812 (820)
                                                ..+.+++|++. .++ .++.+++++.|++++|+++ .++. ++.+.+++.||++
T Consensus       235 --------------------------~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s  285 (394)
T COG4886         235 --------------------------SGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLS  285 (394)
T ss_pred             --------------------------cccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEecc
Confidence                                      34445555554 223 5555555666666666665 2333 5555666666666


Q ss_pred             CCcCc
Q 045139          813 KNMLM  817 (820)
Q Consensus       813 ~N~l~  817 (820)
                      +|.++
T Consensus       286 ~n~~~  290 (394)
T COG4886         286 GNSLS  290 (394)
T ss_pred             Ccccc
Confidence            65554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.23  E-value=1.1e-11  Score=136.73  Aligned_cols=179  Identities=30%  Similarity=0.476  Sum_probs=148.7

Q ss_pred             cccEEEccCCccccccCcccccCC-CCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEEC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQ-KLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDL  650 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  650 (820)
                      .++.|++.+|.++ .+|......+ +|+.|++++|++. .+|..++.++.|+.|++++|++. .+|...+..+.|+.|++
T Consensus       117 ~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence            6889999999998 6777777774 9999999999998 56678899999999999999998 56666668899999999


Q ss_pred             CCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCccccc
Q 045139          651 GHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRY  730 (820)
Q Consensus       651 s~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~  730 (820)
                      ++|++. .+|..+. ....|++|.+++|++. .++..+..+.++..+.+++|++. .+|..++.+..+            
T Consensus       194 s~N~i~-~l~~~~~-~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l------------  257 (394)
T COG4886         194 SGNKIS-DLPPEIE-LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNL------------  257 (394)
T ss_pred             cCCccc-cCchhhh-hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhcccccc------------
Confidence            999998 7887654 4566999999999755 56778889999999999999887 335556665555            


Q ss_pred             CCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCccccCCccc
Q 045139          731 PLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSK  799 (820)
Q Consensus       731 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~~ip~~  799 (820)
                                                   +.|++++|+++ .++.++.+..++.|++++|.++...|..
T Consensus       258 -----------------------------~~L~~s~n~i~-~i~~~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         258 -----------------------------ETLDLSNNQIS-SISSLGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             -----------------------------ceecccccccc-ccccccccCccCEEeccCccccccchhh
Confidence                                         89999999998 6777889999999999999998665554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.17  E-value=4.8e-12  Score=122.85  Aligned_cols=135  Identities=30%  Similarity=0.403  Sum_probs=102.4

Q ss_pred             chhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhcccccc
Q 045139          638 SVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTA  717 (820)
Q Consensus       638 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  717 (820)
                      .+...+.|+++|||+|.|+ .+.+++. -.|.++.|++++|.+...  +.+..+++|+.||||+|.++ .+..+-..   
T Consensus       279 ~~dTWq~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~K---  350 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLK---  350 (490)
T ss_pred             ecchHhhhhhccccccchh-hhhhhhh-hccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhh---
Confidence            3344567999999999998 7887776 689999999999999843  34888999999999999887 22222111   


Q ss_pred             ccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCccccCC-
Q 045139          718 MTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPI-  796 (820)
Q Consensus       718 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~~i-  796 (820)
                                                            +.+.+.|.|+.|.+. ...+++.+-+|..||+++|+|...- 
T Consensus       351 --------------------------------------LGNIKtL~La~N~iE-~LSGL~KLYSLvnLDl~~N~Ie~lde  391 (490)
T KOG1259|consen  351 --------------------------------------LGNIKTLKLAQNKIE-TLSGLRKLYSLVNLDLSSNQIEELDE  391 (490)
T ss_pred             --------------------------------------hcCEeeeehhhhhHh-hhhhhHhhhhheeccccccchhhHHH
Confidence                                                  223378888888886 6667888888888999999887321 


Q ss_pred             cccccCCCCCCeEeCCCCcCccc
Q 045139          797 PSKIGGLTLLNSLDLSKNMLMRA  819 (820)
Q Consensus       797 p~~l~~l~~L~~LdLs~N~l~g~  819 (820)
                      -..+++++-|+.+-|.+|++++.
T Consensus       392 V~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  392 VNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hcccccccHHHHHhhcCCCcccc
Confidence            14578888889988999988764

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=1.5e-11  Score=125.84  Aligned_cols=193  Identities=24%  Similarity=0.229  Sum_probs=121.2

Q ss_pred             CCCCCcEEeCCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCC
Q 045139          162 NLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNS  241 (820)
Q Consensus       162 ~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~  241 (820)
                      ++.+|+...|.++.....+.-.....+++++.||++.|-+..+..+.+....+|+|+.|+++.|.+......   .....
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s---~~~~~  195 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS---NTTLL  195 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc---cchhh
Confidence            455555555554411111111344556666666666666666666677777888888888888877654442   22223


Q ss_pred             cCCccEEECcCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcc--hhhhccCCCc
Q 045139          242 SRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVP--KSFRNLCRLR  319 (820)
Q Consensus       242 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip--~~l~~l~~L~  319 (820)
                      .+.|+.|.++.|.++..--.++....|+|+.|+|..|...+ +.......+..|++|||++|.+-..+  ...+.++.|+
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~-~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL-IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN  274 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc-eecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence            37888888888888865555666666789999999885332 22222556778899999999888666  3477888888


Q ss_pred             EEEcCCCCCCCcc-hhhhhhcccCCcCCccEEEcCCCCCc
Q 045139          320 ALYQDSNNLTDLL-PNLFLKLSNCSRDTLEILQLNSNMLR  358 (820)
Q Consensus       320 ~L~L~~n~l~~~~-~~~~~~l~~~~~~~L~~L~L~~n~l~  358 (820)
                      .|+++.+.+..+. |+.=........++|+.|++..|++.
T Consensus       275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             hhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            8888888887642 22200000011226777777777764

>PLN03150 hypothetical protein; Provisional

Probab=99.12  E-value=1e-10  Score=134.80  Aligned_cols=112  Identities=30%  Similarity=0.430  Sum_probs=87.3

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      .++.|+|++|.++|.+|..+..+++|+.|+|++|++.|.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36778888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCccccccc
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGR  683 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~  683 (820)
                      +|+++|.+|..+.....++..+++.+|.....
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~  530 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCG  530 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccC
Confidence            88888888877763334566777777765433

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=2.7e-11  Score=124.14  Aligned_cols=218  Identities=23%  Similarity=0.225  Sum_probs=142.3

Q ss_pred             CCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchh-hhhhccCCCCcEEEccCCcccCCCCCCCCC
Q 045139          212 SQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVY-YWLFNSSSSLVYLDLSSNKLQGPIPDSAFP  290 (820)
Q Consensus       212 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~-~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~  290 (820)
                      .++.+|+++.|.++.+.....   ......+++++.|||+.|-+....+ ..+.+-.++|+.|+++.|++.-.+....-.
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~---~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~  194 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGI---EEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL  194 (505)
T ss_pred             hhHHhhhheeecCccccccch---hhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh
Confidence            344555555555554433221   1222223677777777776654322 234444558888888888876443333233


Q ss_pred             CCCCCCEEECCCCCCC--CcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccC--CCCcC
Q 045139          291 NPTSLSYLDLSNNQLV--SVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSL--PDITL  366 (820)
Q Consensus       291 ~l~~L~~L~Ls~n~l~--~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~--p~~~~  366 (820)
                      .+++|+.|.++.|.++  .+-.....+|+|+.|+|..|...........-+.     .|+.|+|++|++....  +..+.
T Consensus       195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~-----~L~~LdLs~N~li~~~~~~~~~~  269 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQ-----TLQELDLSNNNLIDFDQGYKVGT  269 (505)
T ss_pred             hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhh-----HHhhccccCCccccccccccccc
Confidence            5788999999999999  5655677899999999999964433333333444     7999999999987544  33888


Q ss_pred             cCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCcccc
Q 045139          367 FSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLIL  441 (820)
Q Consensus       367 l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~  441 (820)
                      ++.|+.|.++.+.+..+..-...    .-+-...+++|++|++..|++...-.-..+..+++|+.|.+..|.+..
T Consensus       270 l~~L~~Lnls~tgi~si~~~d~~----s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  270 LPGLNQLNLSSTGIASIAEPDVE----SLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             ccchhhhhccccCcchhcCCCcc----chhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            99999888887777654332211    111134578999999999999654333456667788888888887754

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.97  E-value=1.1e-10  Score=113.56  Aligned_cols=59  Identities=32%  Similarity=0.366  Sum_probs=31.1

Q ss_pred             CCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCC
Q 045139          269 SLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTD  330 (820)
Q Consensus       269 ~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~  330 (820)
                      .|+.+||++|.++ .|.++ ..-.+.++.|++++|.+..+.. +..+++|+.|+|++|.++.
T Consensus       285 ~LtelDLS~N~I~-~iDES-vKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~  343 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDES-VKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAE  343 (490)
T ss_pred             hhhhccccccchh-hhhhh-hhhccceeEEeccccceeeehh-hhhcccceEeecccchhHh
Confidence            4555555555555 44444 4445555555555555554433 4555555555555555543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.96  E-value=1.1e-10  Score=116.63  Aligned_cols=256  Identities=27%  Similarity=0.295  Sum_probs=127.5

Q ss_pred             ccccCCCCCCEEECcCCCCCCc---ccCccccCCCCCCEEeccCCCCCC----CCCc-------cCCCCCCCcEEeCCCC
Q 045139          109 SSLIGLQHLNYLNMKYNDFGGK---QIPAFIGSLKNIRHLDLSNAGFTG----RVPY-------QLGNLTSLQYLDLSFN  174 (820)
Q Consensus       109 ~~l~~l~~L~~L~Ls~n~l~~~---~~p~~i~~l~~L~~L~Ls~n~l~~----~~p~-------~l~~l~~L~~L~Ls~n  174 (820)
                      +.+.....+++++||+|.|...   .+...+.+.++|+.-++|.- ++|    .+|+       ++-.+++|++||||.|
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN  102 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN  102 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence            3455566777777777777542   13334556667777777653 333    3333       2334556666666666


Q ss_pred             ccccccch----hhccCCCCCCeeeCCCccCCCCc--cHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEE
Q 045139          175 FDMLSKKL----EWLSQLSFLEYVRLNQVNLGEAT--DWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHL  248 (820)
Q Consensus       175 ~~~~~~~~----~~l~~l~~L~~L~l~~n~l~~~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L  248 (820)
                      ... +..+    ..+..+..|++|+|.+|.+....  .+...+      .+|.  .+          ...... +.|+++
T Consensus       103 A~G-~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al------~~l~--~~----------kk~~~~-~~Lrv~  162 (382)
T KOG1909|consen  103 AFG-PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRAL------FELA--VN----------KKAASK-PKLRVF  162 (382)
T ss_pred             ccC-ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHH------HHHH--HH----------hccCCC-cceEEE
Confidence            221 1111    12344555555555555554320  011100      0000  00          011111 566777


Q ss_pred             ECcCCCCCCch---hhhhhccCCCCcEEEccCCcccCC---CCCCCCCCCCCCCEEECCCCCCC-----CcchhhhccCC
Q 045139          249 DLSLNDVSNSV---YYWLFNSSSSLVYLDLSSNKLQGP---IPDSAFPNPTSLSYLDLSNNQLV-----SVPKSFRNLCR  317 (820)
Q Consensus       249 ~Ls~n~l~~~~---~~~~~~~~~~L~~L~Ls~n~l~g~---ip~~~l~~l~~L~~L~Ls~n~l~-----~ip~~l~~l~~  317 (820)
                      ....|++...-   ....++..+.|+.+.++.|.+...   +-...|..+++|+.|||.+|-++     .+...+..+++
T Consensus       163 i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~  242 (382)
T KOG1909|consen  163 ICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH  242 (382)
T ss_pred             EeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch
Confidence            77666664322   122334445677777777765411   11112556667777777777666     23344566666


Q ss_pred             CcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCccccccccc
Q 045139          318 LRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKS  397 (820)
Q Consensus       318 L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~  397 (820)
                      |+++++++|.+......+|..--.-..++|+++.+.+|.++..-.                             ..+..+
T Consensus       243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~-----------------------------~~la~~  293 (382)
T KOG1909|consen  243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA-----------------------------LALAAC  293 (382)
T ss_pred             heeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH-----------------------------HHHHHH
Confidence            777777777666654444433211112244444444444331100                             022334


Q ss_pred             ccCCCCCCEEecCCCcC
Q 045139          398 IGQLSQLELLDVASNSL  414 (820)
Q Consensus       398 l~~l~~L~~L~L~~n~l  414 (820)
                      +...+.|+.|+|++|.+
T Consensus       294 ~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  294 MAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HhcchhhHHhcCCcccc
Confidence            55567788888888888

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.94  E-value=7.7e-10  Score=104.14  Aligned_cols=120  Identities=31%  Similarity=0.391  Sum_probs=34.4

Q ss_pred             cccEEEccCCccccccCcccc-cCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcch-hcCCCCCEEE
Q 045139          572 HFRYLDLSDNLLSGELPNCSK-NWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSV-KSFTQLTVLD  649 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~  649 (820)
                      .+++|+|.+|.|+. +. .++ .+.+|+.|++++|.|+. ++ .+..++.|++|++++|+|+.. +..+ ..+++|++|+
T Consensus        20 ~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred             cccccccccccccc-cc-chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEE
Confidence            45666666666652 22 333 35566666666666663 22 355566666666666666632 2233 3466666666


Q ss_pred             CCCCcCccccC-cchhcCCCCccEEEcCcccccccCCc----ccCCCCCCCEEe
Q 045139          650 LGHNKISGIIP-AWIGDSLPDLVVLSLRSNNFHGRVPV----QVCHLQRIQVLD  698 (820)
Q Consensus       650 Ls~N~l~~~~p-~~l~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~  698 (820)
                      +++|+|...-. ..+. .+++|++|+|.+|+++.. +.    .+..+|+|+.||
T Consensus        95 L~~N~I~~l~~l~~L~-~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   95 LSNNKISDLNELEPLS-SLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             -TTS---SCCCCGGGG-G-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEET
T ss_pred             CcCCcCCChHHhHHHH-cCCCcceeeccCCcccch-hhHHHHHHHHcChhheeC
Confidence            66666653221 2232 456666666666666532 21    234455565555

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.93  E-value=4.8e-10  Score=131.82  Aligned_cols=129  Identities=31%  Similarity=0.369  Sum_probs=91.8

Q ss_pred             cEEEEEcCCCCCCCC-cccccc-cccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCC
Q 045139           89 HVTMLNLQFRSYMPL-RGNISS-SLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSL  166 (820)
Q Consensus        89 ~v~~L~L~~~~~~~l-~g~i~~-~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  166 (820)
                      .+++|-+.+   +.. -..++. .|..++.|++|||++|.-.+. +|..|+.|-+||+|+|+++.++ .+|..+++|.+|
T Consensus       546 ~L~tLll~~---n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  546 KLRTLLLQR---NSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL  620 (889)
T ss_pred             ccceEEEee---cchhhhhcCHHHHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence            456666655   221 223443 477899999999999765554 9999999999999999999999 899999999999


Q ss_pred             cEEeCCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcC
Q 045139          167 QYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLR  223 (820)
Q Consensus       167 ~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls  223 (820)
                      .+|++.++.. ....+.....+++|++|.+..............+.++.+|+.+...
T Consensus       621 ~~Lnl~~~~~-l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  621 IYLNLEVTGR-LESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT  676 (889)
T ss_pred             heeccccccc-cccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence            9999998722 2222334555899999998776644433444455555555555553

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.93  E-value=1.3e-09  Score=102.59  Aligned_cols=105  Identities=32%  Similarity=0.467  Sum_probs=31.4

Q ss_pred             CccEEECcCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhh-hccCCCcEEE
Q 045139          244 SLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSF-RNLCRLRALY  322 (820)
Q Consensus       244 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l-~~l~~L~~L~  322 (820)
                      ++++|+|++|.|+. + +.+.....+|+.|++++|.++ .++.  +..++.|++|++++|+|+.+++.+ ..+++|++|+
T Consensus        20 ~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred             cccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-cccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence            44555555554442 1 122222226677777777776 4543  666777777777777777765544 3567777777


Q ss_pred             cCCCCCCCcch-hhhhhcccCCcCCccEEEcCCCCCc
Q 045139          323 QDSNNLTDLLP-NLFLKLSNCSRDTLEILQLNSNMLR  358 (820)
Q Consensus       323 L~~n~l~~~~~-~~~~~l~~~~~~~L~~L~L~~n~l~  358 (820)
                      +++|+|..... ..+..++     +|+.|++.+|+++
T Consensus        95 L~~N~I~~l~~l~~L~~l~-----~L~~L~L~~NPv~  126 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLP-----KLRVLSLEGNPVC  126 (175)
T ss_dssp             -TTS---SCCCCGGGGG-T-----T--EEE-TT-GGG
T ss_pred             CcCCcCCChHHhHHHHcCC-----CcceeeccCCccc
Confidence            77777765321 2333344     5666666666665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.89  E-value=4.5e-10  Score=112.29  Aligned_cols=139  Identities=21%  Similarity=0.270  Sum_probs=83.0

Q ss_pred             CCCCCCCEEECCCCCCCCc-----chhhhccCCCcEEEcCCCCCCCcc----hhhhhhcccCCcCCccEEEcCCCCCccc
Q 045139          290 PNPTSLSYLDLSNNQLVSV-----PKSFRNLCRLRALYQDSNNLTDLL----PNLFLKLSNCSRDTLEILQLNSNMLRGS  360 (820)
Q Consensus       290 ~~l~~L~~L~Ls~n~l~~i-----p~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~~~~~~L~~L~L~~n~l~~~  360 (820)
                      +.-+.|+++..++|++..-     ...|...+.|+.+.++.|.|....    ...|..++     +|++|||..|-++..
T Consensus       154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~-----~LevLdl~DNtft~e  228 (382)
T KOG1909|consen  154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCP-----HLEVLDLRDNTFTLE  228 (382)
T ss_pred             CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCC-----cceeeecccchhhhH
Confidence            3456777888887777632     344677778888888888775432    23344444     788888888777532


Q ss_pred             CCC-----CcCcCCCcEEecCCCcccEEEccCCcccccccccc-cCCCCCCEEecCCCcCccc---cCHHHhhcCCCCCE
Q 045139          361 LPD-----ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSI-GQLSQLELLDVASNSLKGM---ITEAHLSNLSRLTY  431 (820)
Q Consensus       361 ~p~-----~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~---~~~~~l~~l~~L~~  431 (820)
                      ...     +..+++|++|++++|.++     ... ...+...+ ...++|++|.+.+|.|+..   +-.......+.|+.
T Consensus       229 gs~~LakaL~s~~~L~El~l~dcll~-----~~G-a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~k  302 (382)
T KOG1909|consen  229 GSVALAKALSSWPHLRELNLGDCLLE-----NEG-AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEK  302 (382)
T ss_pred             HHHHHHHHhcccchheeecccccccc-----ccc-HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHH
Confidence            211     445666776666655443     110 00111112 2357888888888888742   11123455778888


Q ss_pred             EeCcCCcc
Q 045139          432 LDLSHNSL  439 (820)
Q Consensus       432 L~Ls~n~l  439 (820)
                      |+|++|.+
T Consensus       303 LnLngN~l  310 (382)
T KOG1909|consen  303 LNLNGNRL  310 (382)
T ss_pred             hcCCcccc
Confidence            88888877

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.87  E-value=3.2e-10  Score=125.20  Aligned_cols=214  Identities=26%  Similarity=0.285  Sum_probs=123.1

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      .++.+.+..|.+. .+-..+..+++|..|++.+|+|.. +...+..+++|++|++++|.|+...  .+..++.|+.|+++
T Consensus        73 ~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   73 SLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLS  148 (414)
T ss_pred             hHHhhccchhhhh-hhhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhheec
Confidence            5566667777766 233446677778888888888773 3333666777888888888887553  35666778888888


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccccCC-cccCCCCCCCEEeCcCCCCccccchhccccccccccccCCccccc
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVP-VQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRY  730 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~  730 (820)
                      +|.|+ .++. +. .++.|+.+++++|++...-+ . ...+.+++.+++.+|.+.....  +..+..+.......+.+  
T Consensus       149 ~N~i~-~~~~-~~-~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i--  220 (414)
T KOG0531|consen  149 GNLIS-DISG-LE-SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKI--  220 (414)
T ss_pred             cCcch-hccC-Cc-cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccc--
Confidence            88876 3332 22 47778888888888774433 2 4667777777888887752211  11111110000000000  


Q ss_pred             CCccccccCceeEEeeccccccccccC--ceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCC
Q 045139          731 PLRTDYYNDHALLVWKRKDSEYRNTLG--LVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLN  807 (820)
Q Consensus       731 ~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~  807 (820)
                                  ....     -...+.  +|+.+++++|++. .++ .+..+..+..|++++|++...  ..+...+.+.
T Consensus       221 ------------~~~~-----~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~  280 (414)
T KOG0531|consen  221 ------------SKLE-----GLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLS  280 (414)
T ss_pred             ------------eecc-----CcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHH
Confidence                        0000     000011  2466777777776 553 666666777777777776643  2234455555


Q ss_pred             eEeCCCCcCc
Q 045139          808 SLDLSKNMLM  817 (820)
Q Consensus       808 ~LdLs~N~l~  817 (820)
                      .+.++.|++.
T Consensus       281 ~~~~~~~~~~  290 (414)
T KOG0531|consen  281 ELWLNDNKLA  290 (414)
T ss_pred             HhccCcchhc
Confidence            6666666554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.73  E-value=6e-09  Score=80.49  Aligned_cols=60  Identities=40%  Similarity=0.486  Sum_probs=54.6

Q ss_pred             CceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCcC
Q 045139          757 GLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML  816 (820)
Q Consensus       757 ~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l  816 (820)
                      |+|+.|++++|+++...+ .|..+++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            457999999999995555 889999999999999999988888999999999999999986

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.71  E-value=1.3e-08  Score=78.68  Aligned_cols=58  Identities=33%  Similarity=0.449  Sum_probs=26.3

Q ss_pred             CcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCc
Q 045139          597 LTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNK  654 (820)
Q Consensus       597 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  654 (820)
                      |++|++++|+++...+..|..+++|++|++++|.+....|..|.++++|++|++++|+
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4444444444443333444444444444444444444444444444444444444443

...

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.66  E-value=2.9e-08  Score=69.94  Aligned_cols=41  Identities=49%  Similarity=0.946  Sum_probs=30.3

Q ss_pred             HHHHHHHHHhhccCC-CCCCCCCCCCCCCCCCCCcccCceEec
Q 045139           43 ERERQALLMFKQGLI-DEYGHLSSWGNEDDKKDCCKWRGVSCS   84 (820)
Q Consensus        43 ~~~~~~l~~~~~~~~-~~~~~~~~W~~~~~~~~~c~w~gv~c~   84 (820)
                      ++|++||++||+++. +|.+.+.+|... ...+||.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~-~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPS-SDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT---S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCc-CCCCCeeeccEEeC
Confidence            579999999999998 577899999841 12799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.66  E-value=4e-09  Score=116.45  Aligned_cols=199  Identities=31%  Similarity=0.371  Sum_probs=112.3

Q ss_pred             CCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCC
Q 045139          113 GLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLE  192 (820)
Q Consensus       113 ~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~  192 (820)
                      .+..++.+++..|.+..  +-..++.+++|++|++.+|.|. .+...+..+++|++|++++|   ....+..+..++.|+
T Consensus        70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N---~I~~i~~l~~l~~L~  143 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFN---KITKLEGLSTLTLLK  143 (414)
T ss_pred             HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchh-hcccchhhhhcchheecccc---ccccccchhhccchh
Confidence            44555555566665533  2233555666666666666666 33323555666666666666   334444555555566


Q ss_pred             eeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcE
Q 045139          193 YVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVY  272 (820)
Q Consensus       193 ~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~  272 (820)
                      .|++.+|.+....    .+..++.|+.+++++|.+....+.   ....+ .+++.+++.+|.+...-.....  . .+..
T Consensus       144 ~L~l~~N~i~~~~----~~~~l~~L~~l~l~~n~i~~ie~~---~~~~~-~~l~~l~l~~n~i~~i~~~~~~--~-~l~~  212 (414)
T KOG0531|consen  144 ELNLSGNLISDIS----GLESLKSLKLLDLSYNRIVDIEND---ELSEL-ISLEELDLGGNSIREIEGLDLL--K-KLVL  212 (414)
T ss_pred             hheeccCcchhcc----CCccchhhhcccCCcchhhhhhhh---hhhhc-cchHHHhccCCchhcccchHHH--H-HHHH
Confidence            6666666665532    233466677777777766554331   01233 6667777777766532221111  1 3444


Q ss_pred             EEccCCcccCCCCCCCCCCCCC--CCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCc
Q 045139          273 LDLSSNKLQGPIPDSAFPNPTS--LSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDL  331 (820)
Q Consensus       273 L~Ls~n~l~g~ip~~~l~~l~~--L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~  331 (820)
                      +++..|.++ .+..  +..+..  |+.+++++|.+..++..+..+..+..+++..|++...
T Consensus       213 ~~l~~n~i~-~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~  270 (414)
T KOG0531|consen  213 LSLLDNKIS-KLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNL  270 (414)
T ss_pred             hhcccccce-eccC--cccchhHHHHHHhcccCccccccccccccccccccchhhcccccc
Confidence            467777666 3322  223333  7777777777776666667777777777777777654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.56  E-value=1.8e-09  Score=117.16  Aligned_cols=179  Identities=25%  Similarity=0.317  Sum_probs=123.2

Q ss_pred             CcccccCCCCcEEEcCCCeeeecCCCCcccc-cCCcEEeccCCccc----------ccCCcchhcCCCCCEEECCCCcCc
Q 045139          588 PNCSKNWQKLTVLNLANNKFSGKIPDSMDFN-CMMLSLHLRNNSFI----------GELPSSVKSFTQLTVLDLGHNKIS  656 (820)
Q Consensus       588 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~----------~~~p~~l~~l~~L~~L~Ls~N~l~  656 (820)
                      |-.+..+.+|++|.+.++.+..  ...+..+ ..|+.|-. .|.+.          |.+..++. .-.|...+.++|++.
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L~  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSPV-WNKLATASFSYNRLV  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccchh-hhhHhhhhcchhhHH
Confidence            5567778889999999988763  1122222 22333322 22221          11111111 135788899999997


Q ss_pred             cccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccch-hccccccccccccCCcccccCCccc
Q 045139          657 GIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQ-CLNNLTAMTANKSSNAMIRYPLRTD  735 (820)
Q Consensus       657 ~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~~~~~~~~~~~~~~~~  735 (820)
                       ....++. -++.|+.|+|++|+++..  +.+..++.|+.|||++|.+. .+|. ....+. |                 
T Consensus       178 -~mD~SLq-ll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L-----------------  234 (1096)
T KOG1859|consen  178 -LMDESLQ-LLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-L-----------------  234 (1096)
T ss_pred             -hHHHHHH-HHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-h-----------------
Confidence             6666665 688999999999999854  37888999999999999987 4443 112221 3                 


Q ss_pred             cccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCccccCCc-ccccCCCCCCeEeCCCC
Q 045139          736 YYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIP-SKIGGLTLLNSLDLSKN  814 (820)
Q Consensus       736 ~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~~ip-~~l~~l~~L~~LdLs~N  814 (820)
                                              ..|.+++|.++ ..-++.++++|+.||+|+|-|.+.-- .-+..|..|+.|+|.+|
T Consensus       235 ------------------------~~L~lrnN~l~-tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN  289 (1096)
T KOG1859|consen  235 ------------------------QLLNLRNNALT-TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN  289 (1096)
T ss_pred             ------------------------eeeeecccHHH-hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence                                    78999999998 66688899999999999998875422 22456788899999999


Q ss_pred             cCcc
Q 045139          815 MLMR  818 (820)
Q Consensus       815 ~l~g  818 (820)
                      ++.+
T Consensus       290 Pl~c  293 (1096)
T KOG1859|consen  290 PLCC  293 (1096)
T ss_pred             cccc
Confidence            9854

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.53  E-value=3.3e-08  Score=96.64  Aligned_cols=195  Identities=24%  Similarity=0.296  Sum_probs=105.7

Q ss_pred             CCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhcc
Q 045139          187 QLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNS  266 (820)
Q Consensus       187 ~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~  266 (820)
                      ..+.++++|+.+|.++.+.++...+.++|.|++|+++.|.+...+....   ... .+|++|-|.+..+.-.        
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~-~nl~~lVLNgT~L~w~--------  136 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPL-KNLRVLVLNGTGLSWT--------  136 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccc-cceEEEEEcCCCCChh--------
Confidence            3567778888888999888888888999999999999999887655211   122 4455555544433321        


Q ss_pred             CCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCC
Q 045139          267 SSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDT  346 (820)
Q Consensus       267 ~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~  346 (820)
                                       -....+..++.+++|+++.|.+             +.+++..+.++...|... .+.  ..+.
T Consensus       137 -----------------~~~s~l~~lP~vtelHmS~N~~-------------rq~n~Dd~c~e~~s~~v~-tlh--~~~c  183 (418)
T KOG2982|consen  137 -----------------QSTSSLDDLPKVTELHMSDNSL-------------RQLNLDDNCIEDWSTEVL-TLH--QLPC  183 (418)
T ss_pred             -----------------hhhhhhhcchhhhhhhhccchh-------------hhhccccccccccchhhh-hhh--cCCc
Confidence                             1122234455555555555422             222223333322221100 000  0001


Q ss_pred             ccEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcC
Q 045139          347 LEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNL  426 (820)
Q Consensus       347 L~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l  426 (820)
                      +..+.++-|++..      .++++..+.+..+.++++  +.       .+....++.+..|+|+.|+|.....-..+..+
T Consensus       184 ~~~~w~~~~~l~r------~Fpnv~sv~v~e~PlK~~--s~-------ek~se~~p~~~~LnL~~~~idswasvD~Ln~f  248 (418)
T KOG2982|consen  184 LEQLWLNKNKLSR------IFPNVNSVFVCEGPLKTE--SS-------EKGSEPFPSLSCLNLGANNIDSWASVDALNGF  248 (418)
T ss_pred             HHHHHHHHHhHHh------hcccchheeeecCcccch--hh-------cccCCCCCcchhhhhcccccccHHHHHHHcCC
Confidence            1122222222222      234455554444444421  11       22344455666788888888776555668888


Q ss_pred             CCCCEEeCcCCcccc
Q 045139          427 SRLTYLDLSHNSLIL  441 (820)
Q Consensus       427 ~~L~~L~Ls~n~l~~  441 (820)
                      +.|..|.++++++..
T Consensus       249 ~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  249 PQLVDLRVSENPLSD  263 (418)
T ss_pred             chhheeeccCCcccc
Confidence            888888888888754

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.45  E-value=2.6e-07  Score=109.04  Aligned_cols=108  Identities=29%  Similarity=0.370  Sum_probs=66.4

Q ss_pred             CCccEEECcCCCC-CCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEE
Q 045139          243 RSLAHLDLSLNDV-SNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRAL  321 (820)
Q Consensus       243 ~~L~~L~Ls~n~l-~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L  321 (820)
                      +.|+.|-+..|.- ...++..++...+.|++|||++|.--+.+|.. ++.+-+|++|++++..++.+|.++++++.|.+|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDTGISHLPSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence            4566666666642 23444555555556777777766544566666 666777777777777777777777777777777


Q ss_pred             EcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCC
Q 045139          322 YQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNM  356 (820)
Q Consensus       322 ~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~  356 (820)
                      ++..+.-...+|.....+.     +|++|.+..-.
T Consensus       624 nl~~~~~l~~~~~i~~~L~-----~Lr~L~l~~s~  653 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQ-----SLRVLRLPRSA  653 (889)
T ss_pred             ccccccccccccchhhhcc-----cccEEEeeccc
Confidence            7666655544555555555     66666665543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=9.7e-09  Score=100.34  Aligned_cols=182  Identities=21%  Similarity=0.218  Sum_probs=97.4

Q ss_pred             CCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCeee
Q 045139          116 HLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVR  195 (820)
Q Consensus       116 ~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~  195 (820)
                      +|++||||+..++...+-.-+..+.+|+-|.|.++++...+-..+++-.+|+.|+++.+..+..-.              
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~--------------  251 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA--------------  251 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhH--------------
Confidence            477777777776554444455667777777777777777776677777777777777663222211              


Q ss_pred             CCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCC--CCCchhhhhhccCCCCcEE
Q 045139          196 LNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLND--VSNSVYYWLFNSSSSLVYL  273 (820)
Q Consensus       196 l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~~~~L~~L  273 (820)
                                 ..-.+.+++.|.+|++++|.+....-.  ..+....++|+.|++++..  +...-.+.+...+++|.+|
T Consensus       252 -----------~~ll~~scs~L~~LNlsWc~l~~~~Vt--v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L  318 (419)
T KOG2120|consen  252 -----------LQLLLSSCSRLDELNLSWCFLFTEKVT--VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL  318 (419)
T ss_pred             -----------HHHHHHhhhhHhhcCchHhhccchhhh--HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence                       223344555555555555544432211  1222333556666666542  2222223334444566666


Q ss_pred             EccCCc-ccCCCCCCCCCCCCCCCEEECCCCCCCCcch---hhhccCCCcEEEcCCC
Q 045139          274 DLSSNK-LQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK---SFRNLCRLRALYQDSN  326 (820)
Q Consensus       274 ~Ls~n~-l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~---~l~~l~~L~~L~L~~n  326 (820)
                      ||++|. ++...-.. |-+++.|++|.++.|..- +|.   .+...+.|.+|++.++
T Consensus       319 DLSD~v~l~~~~~~~-~~kf~~L~~lSlsRCY~i-~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  319 DLSDSVMLKNDCFQE-FFKFNYLQHLSLSRCYDI-IPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             ccccccccCchHHHH-HHhcchheeeehhhhcCC-ChHHeeeeccCcceEEEEeccc
Confidence            666654 22111111 445666666666666432 122   2556667777776554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.36  E-value=2.9e-08  Score=85.94  Aligned_cols=73  Identities=22%  Similarity=0.389  Sum_probs=42.4

Q ss_pred             CCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccc
Q 045139          643 TQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAM  718 (820)
Q Consensus       643 ~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  718 (820)
                      ..|+..+|++|.+. .+|..+....+.++.|++++|+++ .+|..+..++.|+.|+++.|++. ..|..+..+.++
T Consensus        53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l  125 (177)
T KOG4579|consen   53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKL  125 (177)
T ss_pred             ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhH
Confidence            44555566666665 455544444556666666666666 55666666666666666666665 445544445444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.26  E-value=4.1e-08  Score=106.91  Aligned_cols=179  Identities=30%  Similarity=0.270  Sum_probs=119.6

Q ss_pred             ccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEEEccCCc------c---cCCCCCCCCCCCCCCCEEECCCCCCC
Q 045139          236 VSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNK------L---QGPIPDSAFPNPTSLSYLDLSNNQLV  306 (820)
Q Consensus       236 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~------l---~g~ip~~~l~~l~~L~~L~Ls~n~l~  306 (820)
                      -.+... ++|++|.+.++.+..  ...+..+...|++|--++.-      +   .|.+..+ + ....|...+.++|.++
T Consensus       103 i~ifpF-~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns-~-~Wn~L~~a~fsyN~L~  177 (1096)
T KOG1859|consen  103 ISIFPF-RSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNS-P-VWNKLATASFSYNRLV  177 (1096)
T ss_pred             ceeccc-cceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccc-h-hhhhHhhhhcchhhHH
Confidence            345555 899999999998763  22222233345555333210      0   1222222 1 1235778888899998


Q ss_pred             CcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCCC--cCcCCCcEEecCCCcccEEE
Q 045139          307 SVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDI--TLFSSLKELHLYDNMLDVLY  384 (820)
Q Consensus       307 ~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~--~~l~~L~~L~l~~n~L~~L~  384 (820)
                      .+..++.-++.|+.|+|++|+++...  .+..++     +|++|||++|.+. .+|.+  ..+. |+.|.+++|.+++| 
T Consensus       178 ~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~-----~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL-  247 (1096)
T KOG1859|consen  178 LMDESLQLLPALESLNLSHNKFTKVD--NLRRLP-----KLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL-  247 (1096)
T ss_pred             hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcc-----cccccccccchhc-cccccchhhhh-heeeeecccHHHhh-
Confidence            88888888899999999999998754  566666     8999999999887 45542  2222 66665555554422 


Q ss_pred             ccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccc
Q 045139          385 LNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLI  440 (820)
Q Consensus       385 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~  440 (820)
                                 ..+.++.+|+.||++.|-+.+.-.-..+..+..|+.|.|.+|++-
T Consensus       248 -----------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  248 -----------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             -----------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence                       257788889999999998877544445677788888999999873

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=4.9e-08  Score=95.51  Aligned_cols=179  Identities=23%  Similarity=0.247  Sum_probs=113.9

Q ss_pred             CCccEEECcCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCC-CCC--cchhhhccCCCc
Q 045139          243 RSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQ-LVS--VPKSFRNLCRLR  319 (820)
Q Consensus       243 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~-l~~--ip~~l~~l~~L~  319 (820)
                      +.|+++||+...++..-...+...+.+|+.|.+.++++.+.|-.. ++.-.+|+.|+++.+. +++  +.--+.+++.|.
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-HhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence            568999999988886655555555568999999999998877766 7788899999998864 553  333478899999


Q ss_pred             EEEcCCCCCCCcchh-hhhhcccCCcCCccEEEcCCCCCc---ccCCC-CcCcCCCcEEecCCCcccEEEccCCcccccc
Q 045139          320 ALYQDSNNLTDLLPN-LFLKLSNCSRDTLEILQLNSNMLR---GSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTL  394 (820)
Q Consensus       320 ~L~L~~n~l~~~~~~-~~~~l~~~~~~~L~~L~L~~n~l~---~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~  394 (820)
                      .|+++.|.+....-. .+....    ++|..|+++++.-.   ..+.. ...+++|.+|+++++         +.++...
T Consensus       264 ~LNlsWc~l~~~~Vtv~V~his----e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~---------v~l~~~~  330 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAVAHIS----ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS---------VMLKNDC  330 (419)
T ss_pred             hcCchHhhccchhhhHHHhhhc----hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc---------cccCchH
Confidence            999998877654322 222333    27888888876421   11111 345566666655542         2233333


Q ss_pred             cccccCCCCCCEEecCCCcCccccCHH--HhhcCCCCCEEeCcCC
Q 045139          395 TKSIGQLSQLELLDVASNSLKGMITEA--HLSNLSRLTYLDLSHN  437 (820)
Q Consensus       395 ~~~l~~l~~L~~L~L~~n~l~~~~~~~--~l~~l~~L~~L~Ls~n  437 (820)
                      ...|..++.|++|.++.|..  .+|..  .+...|.|.+|++.++
T Consensus       331 ~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  331 FQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             HHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            34555666777777766653  23321  2345566666666554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.14  E-value=2.7e-07  Score=90.39  Aligned_cols=193  Identities=17%  Similarity=0.091  Sum_probs=102.1

Q ss_pred             cCCCCCCEEECcCCCCCCc-ccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCC
Q 045139          112 IGLQHLNYLNMKYNDFGGK-QIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSF  190 (820)
Q Consensus       112 ~~l~~L~~L~Ls~n~l~~~-~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~  190 (820)
                      ...++++.|||.+|.++.- .+-.-+.++++|++|+|+.|.+...|-..=..+.+|++|-|.+....-...-..+..++.
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            4567899999999998752 133445689999999999998885443211356788888887762222222234455666


Q ss_pred             CCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCch-hhhhhccCCC
Q 045139          191 LEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSV-YYWLFNSSSS  269 (820)
Q Consensus       191 L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~-~~~~~~~~~~  269 (820)
                      +++|+++.|.+...                .+..+.++.           ..+.++.+..-.|...--. -..+....++
T Consensus       148 vtelHmS~N~~rq~----------------n~Dd~c~e~-----------~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn  200 (418)
T KOG2982|consen  148 VTELHMSDNSLRQL----------------NLDDNCIED-----------WSTEVLTLHQLPCLEQLWLNKNKLSRIFPN  200 (418)
T ss_pred             hhhhhhccchhhhh----------------ccccccccc-----------cchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence            66666665532211                111111111           1122333333222111000 0011223345


Q ss_pred             CcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCc--chhhhccCCCcEEEcCCCCCCCc
Q 045139          270 LVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSV--PKSFRNLCRLRALYQDSNNLTDL  331 (820)
Q Consensus       270 L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~i--p~~l~~l~~L~~L~L~~n~l~~~  331 (820)
                      +..+-+..|.+...-....+..++.+..|+|+.++|.+.  -+.+.++++|..|.++++.+...
T Consensus       201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence            666666666554332222244555666677777766632  23466677777777777766543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.07  E-value=1.5e-07  Score=81.67  Aligned_cols=135  Identities=21%  Similarity=0.283  Sum_probs=85.7

Q ss_pred             cccEEEccCCccccccCccccc---CCCCcEEEcCCCeeeecCCCCc-ccccCCcEEeccCCcccccCCcchhcCCCCCE
Q 045139          572 HFRYLDLSDNLLSGELPNCSKN---WQKLTVLNLANNKFSGKIPDSM-DFNCMMLSLHLRNNSFIGELPSSVKSFTQLTV  647 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~---l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  647 (820)
                      .+..++|+.+.+- .+++....   ...|+..+|++|.+.. .|..| ...+.++.|++++|.|+ .+|..+..++.|+.
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS  104 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence            4556777777764 45544433   3456666888888874 44444 33457777778888777 56777777778888


Q ss_pred             EECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhc
Q 045139          648 LDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCL  712 (820)
Q Consensus       648 L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  712 (820)
                      |+++.|++. ..|..+. .+.++-+|+..+|.+. .+|..+.--+..-..++.++++.+.-|..+
T Consensus       105 lNl~~N~l~-~~p~vi~-~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~kl  166 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRVIA-PLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKL  166 (177)
T ss_pred             cccccCccc-cchHHHH-HHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccc
Confidence            888888776 6677776 4777777777777766 455443322333334556666666555433

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.01  E-value=1.4e-06  Score=84.45  Aligned_cols=204  Identities=19%  Similarity=0.214  Sum_probs=94.3

Q ss_pred             ccCCCCCCEEeccCCCCCCCCCc----cCCCCCCCcEEeCCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHh
Q 045139          136 IGSLKNIRHLDLSNAGFTGRVPY----QLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVV  211 (820)
Q Consensus       136 i~~l~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l  211 (820)
                      +..+..++.++||+|.|...-..    .|.+-.+|+..+++.-+.  ......+.               +...-+...+
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ft--gr~kde~~---------------~~L~~Ll~aL   88 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFT--GRDKDELY---------------SNLVMLLKAL   88 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhh--cccHHHHH---------------HHHHHHHHHH
Confidence            34466777777777777643332    233445566665554310  00000000               0000123455


Q ss_pred             CCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCC----chhhhhhc--------cCCCCcEEEccCCc
Q 045139          212 SQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSN----SVYYWLFN--------SSSSLVYLDLSSNK  279 (820)
Q Consensus       212 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~----~~~~~~~~--------~~~~L~~L~Ls~n~  279 (820)
                      .+||+|+..+||.|-+....|..+..+....+.|++|.+++|.+.-    .+...++.        ..|.|+......|+
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR  168 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR  168 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence            6666666666666666555443333322222566666666665431    12212211        11356666666665


Q ss_pred             ccCCCCCC----CCCCCCCCCEEECCCCCCC--Cc----chhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccE
Q 045139          280 LQGPIPDS----AFPNPTSLSYLDLSNNQLV--SV----PKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEI  349 (820)
Q Consensus       280 l~g~ip~~----~l~~l~~L~~L~Ls~n~l~--~i----p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~  349 (820)
                      +. ..|..    .+..-..|+++.+..|.|.  .+    -..+..+.+|+.|++.+|.++-.....++..- |.|+.|+.
T Consensus       169 le-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al-~~W~~lrE  246 (388)
T COG5238         169 LE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL-CEWNLLRE  246 (388)
T ss_pred             hc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHh-cccchhhh
Confidence            54 22211    1222245566666666555  11    11234555666666666666554443333322 33445555


Q ss_pred             EEcCCCCCc
Q 045139          350 LQLNSNMLR  358 (820)
Q Consensus       350 L~L~~n~l~  358 (820)
                      |.+..|-++
T Consensus       247 L~lnDClls  255 (388)
T COG5238         247 LRLNDCLLS  255 (388)
T ss_pred             ccccchhhc
Confidence            555555544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.95  E-value=3.8e-07  Score=93.70  Aligned_cols=85  Identities=26%  Similarity=0.232  Sum_probs=41.9

Q ss_pred             CCccEEECcCC-CCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCC-CCCCCCCEEECCCCCCC---CcchhhhccCC
Q 045139          243 RSLAHLDLSLN-DVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAF-PNPTSLSYLDLSNNQLV---SVPKSFRNLCR  317 (820)
Q Consensus       243 ~~L~~L~Ls~n-~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l-~~l~~L~~L~Ls~n~l~---~ip~~l~~l~~  317 (820)
                      ..|++++.+++ .+++..-..++...++|+.|.++.++--+..-...+ .+++.|+.+++..+...   ++-..=.+++.
T Consensus       294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~  373 (483)
T KOG4341|consen  294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR  373 (483)
T ss_pred             hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence            56666666654 333344445555555666666666652111111101 24556666666665443   12222235556


Q ss_pred             CcEEEcCCCC
Q 045139          318 LRALYQDSNN  327 (820)
Q Consensus       318 L~~L~L~~n~  327 (820)
                      |+++.++++.
T Consensus       374 lr~lslshce  383 (483)
T KOG4341|consen  374 LRVLSLSHCE  383 (483)
T ss_pred             hccCChhhhh
Confidence            6666666553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.88  E-value=1.7e-05  Score=55.93  Aligned_cols=38  Identities=39%  Similarity=0.580  Sum_probs=24.9

Q ss_pred             CCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCC
Q 045139          293 TSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTD  330 (820)
Q Consensus       293 ~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~  330 (820)
                      ++|++|++++|+|+.+|+.++++++|++|++++|+++.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence            35667777777777776667777777777777777664

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.86  E-value=9.9e-06  Score=57.10  Aligned_cols=35  Identities=37%  Similarity=0.673  Sum_probs=18.7

Q ss_pred             ceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccc
Q 045139          758 LVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLT  793 (820)
Q Consensus       758 ~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~  793 (820)
                      +|++|++++|+++ .+| .+++|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3455566666665 444 3555566666666666555

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.86  E-value=5.4e-06  Score=95.58  Aligned_cols=158  Identities=21%  Similarity=0.218  Sum_probs=92.9

Q ss_pred             CCCCEEECcCCCCCCcccCcccc-CCCCCCEEeccCCCCCCC-CCccCCCCCCCcEEeCCCCccccccchhhccCCCCCC
Q 045139          115 QHLNYLNMKYNDFGGKQIPAFIG-SLKNIRHLDLSNAGFTGR-VPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLE  192 (820)
Q Consensus       115 ~~L~~L~Ls~n~l~~~~~p~~i~-~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~  192 (820)
                      .+|++||+++...-....|..++ .|+.|+.|.+++-.+... .-....++++|.+||+|+.   -...+..++++++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T---nI~nl~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT---NISNLSGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC---CccCcHHHhccccHH
Confidence            46777777775443333444444 567777777776555422 2233456777777777766   233346677777777


Q ss_pred             eeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCC--ccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCC
Q 045139          193 YVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVI--ASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSL  270 (820)
Q Consensus       193 ~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L  270 (820)
                      .|.+.+-.+..... ...+.++++|++||+|........  ...+.+.+..+|+|+.||.|+..+.+.+-+.+.+..++|
T Consensus       199 ~L~mrnLe~e~~~~-l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L  277 (699)
T KOG3665|consen  199 VLSMRNLEFESYQD-LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL  277 (699)
T ss_pred             HHhccCCCCCchhh-HHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence            77777766665433 244566777777777765543322  111222233347788888887777776666665555566


Q ss_pred             cEEEcc
Q 045139          271 VYLDLS  276 (820)
Q Consensus       271 ~~L~Ls  276 (820)
                      +.+..-
T Consensus       278 ~~i~~~  283 (699)
T KOG3665|consen  278 QQIAAL  283 (699)
T ss_pred             hhhhhh
Confidence            555443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.72  E-value=2.4e-05  Score=76.09  Aligned_cols=140  Identities=21%  Similarity=0.225  Sum_probs=69.7

Q ss_pred             CCCCCeeeCCCccCCCC--ccHHHHhCCCCCCCEEEcCCCCCCC---CCccc----cccccCCcCCccEEECcCCCCCCc
Q 045139          188 LSFLEYVRLNQVNLGEA--TDWLQVVSQLPSLTELQLRGCNLPS---VIASS----SVSFSNSSRSLAHLDLSLNDVSNS  258 (820)
Q Consensus       188 l~~L~~L~l~~n~l~~~--~~~~~~l~~l~~L~~L~Ls~n~l~~---~~~~~----~~~l~~~~~~L~~L~Ls~n~l~~~  258 (820)
                      +..+..+++++|.+..-  ..+...+++-.+|+..+++.-....   .++..    ...+.++ +.|+..+||.|.|.-.
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkc-p~l~~v~LSDNAfg~~  107 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKC-PRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcC-CcceeeeccccccCcc
Confidence            44444444444454432  2344455556666666655432111   11111    1233444 7777777777777666


Q ss_pred             hhhhhhc---cCCCCcEEEccCCcccCCCCCCCC-------------CCCCCCCEEECCCCCCCCcch-----hhhccCC
Q 045139          259 VYYWLFN---SSSSLVYLDLSSNKLQGPIPDSAF-------------PNPTSLSYLDLSNNQLVSVPK-----SFRNLCR  317 (820)
Q Consensus       259 ~~~~~~~---~~~~L~~L~Ls~n~l~g~ip~~~l-------------~~l~~L~~L~Ls~n~l~~ip~-----~l~~l~~  317 (820)
                      .|+.+..   ....|++|.+++|.+. .+..+-+             .+-+.|+......|++...|.     .+..-..
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~  186 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN  186 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence            5554432   2236777777777664 3322212             133556666666666553332     1222245


Q ss_pred             CcEEEcCCCCCC
Q 045139          318 LRALYQDSNNLT  329 (820)
Q Consensus       318 L~~L~L~~n~l~  329 (820)
                      |+++.+..|.|.
T Consensus       187 lk~vki~qNgIr  198 (388)
T COG5238         187 LKEVKIQQNGIR  198 (388)
T ss_pred             ceeEEeeecCcC
Confidence            555555555554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.72  E-value=2.9e-06  Score=87.45  Aligned_cols=264  Identities=22%  Similarity=0.187  Sum_probs=120.6

Q ss_pred             HHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCC-CCCCchhhhhhccCCCCcEEEccCCc-ccCCC
Q 045139          207 WLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLN-DVSNSVYYWLFNSSSSLVYLDLSSNK-LQGPI  284 (820)
Q Consensus       207 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~~~~L~~L~Ls~n~-l~g~i  284 (820)
                      .-....++|++++|.+.+|.....  ..+..+++.+++|+++++..+ .++......+.+.+++|++|+++++. ++|.-
T Consensus       156 lrt~~~~CpnIehL~l~gc~~iTd--~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~g  233 (483)
T KOG4341|consen  156 LRTFASNCPNIEHLALYGCKKITD--SSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNG  233 (483)
T ss_pred             hhHHhhhCCchhhhhhhcceeccH--HHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCc
Confidence            333445566666666666642111  112445555577777777773 55555555566666678888877764 33311


Q ss_pred             CCCCCCCCCCCCEEECCCCCCCCc---chhhhccCCCcEEEcCCC-CCCCcchhhhhhcccCCcCCccEEEcCCCCCccc
Q 045139          285 PDSAFPNPTSLSYLDLSNNQLVSV---PKSFRNLCRLRALYQDSN-NLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGS  360 (820)
Q Consensus       285 p~~~l~~l~~L~~L~Ls~n~l~~i---p~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~  360 (820)
                      -...+.+++.++.+.+.+|.=...   -..=..+..+.++++..+ .++...-..+....    .+|+.++.+++...+.
T Consensus       234 v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c----~~lq~l~~s~~t~~~d  309 (483)
T KOG4341|consen  234 VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC----HALQVLCYSSCTDITD  309 (483)
T ss_pred             chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh----hHhhhhcccCCCCCch
Confidence            112244566666666665432211   111123334445554443 33332211111111    1566776666654322


Q ss_pred             CCC---CcCcCCCcEEecCCCcccEEEccCCcccccccccc-cCCCCCCEEecCCCcCccccCH-HHhhcCCCCCEEeCc
Q 045139          361 LPD---ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSI-GQLSQLELLDVASNSLKGMITE-AHLSNLSRLTYLDLS  435 (820)
Q Consensus       361 ~p~---~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~-~~l~~l~~L~~L~Ls  435 (820)
                      .+-   ..+..+|+.+.+..++-    ++...++     .+ .+++.|+.+++..+.....-.- ..-.+++.|+.+.++
T Consensus       310 ~~l~aLg~~~~~L~~l~l~~c~~----fsd~~ft-----~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lsls  380 (483)
T KOG4341|consen  310 EVLWALGQHCHNLQVLELSGCQQ----FSDRGFT-----MLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLS  380 (483)
T ss_pred             HHHHHHhcCCCceEEEeccccch----hhhhhhh-----hhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChh
Confidence            221   23455666665554431    1222222     11 2355666666666544321100 012345666666666


Q ss_pred             CCcccccc-----CCCCcCccccceeecccccCCC-CCchhhhcCCCccEEecCCC
Q 045139          436 HNSLILNF-----GSGWVPSFELNIIRLGACKQGP-QFPKWLQTQNKFSELDVSAA  485 (820)
Q Consensus       436 ~n~l~~~~-----~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~n  485 (820)
                      ++......     ...-.....++.+.+++|.... ..-..+..+++|+.+++.++
T Consensus       381 hce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  381 HCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             hhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence            66543221     1111222334444444443321 22233444455555555444

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.60  E-value=0.00024  Score=75.63  Aligned_cols=115  Identities=20%  Similarity=0.174  Sum_probs=66.7

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      +++.|++++|.++ .+|.   -.++|++|.++++.-...+|+.+  .++|++|++++|.....+|.      +|+.|+++
T Consensus        53 ~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~  120 (426)
T PRK15386         53 ASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEIK  120 (426)
T ss_pred             CCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEeC
Confidence            6788888888777 4452   12468888888755434566554  25788888888833334553      46777777


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCccc-cc-ccCCcccCCCCCCCEEeCcCCCCc
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNN-FH-GRVPVQVCHLQRIQVLDLSQNNIS  705 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~-l~-~~~p~~l~~l~~L~~L~Ls~N~l~  705 (820)
                      ++... .++.    -.++|+.|.+.+++ .. ..+|..  -.++|++|++++|...
T Consensus       121 ~n~~~-~L~~----LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i  169 (426)
T PRK15386        121 GSATD-SIKN----VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI  169 (426)
T ss_pred             CCCCc-cccc----CcchHhheeccccccccccccccc--cCCcccEEEecCCCcc
Confidence            66543 2211    12356667665433 11 011111  1257888888887754

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.58  E-value=0.00019  Score=76.35  Aligned_cols=76  Identities=17%  Similarity=0.266  Sum_probs=47.1

Q ss_pred             cccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCC-cCccccCcchhcCCCC
Q 045139          591 SKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHN-KISGIIPAWIGDSLPD  669 (820)
Q Consensus       591 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~~l~~  669 (820)
                      +..+.+++.|++++|.++ .+|.   -..+|++|.+++|.-...+|..+.  ++|+.|++++| .+. .+|.       +
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~-------s  113 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE-------S  113 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc-------c
Confidence            445678888888888777 4552   234588888877655456665442  46777777777 443 3332       3


Q ss_pred             ccEEEcCcccc
Q 045139          670 LVVLSLRSNNF  680 (820)
Q Consensus       670 L~~L~L~~N~l  680 (820)
                      |+.|+++.+..
T Consensus       114 Le~L~L~~n~~  124 (426)
T PRK15386        114 VRSLEIKGSAT  124 (426)
T ss_pred             cceEEeCCCCC
Confidence            55566655543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.54  E-value=3.4e-05  Score=89.09  Aligned_cols=160  Identities=18%  Similarity=0.181  Sum_probs=81.1

Q ss_pred             CCccEEECcCCC-CCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEE
Q 045139          243 RSLAHLDLSLND-VSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRAL  321 (820)
Q Consensus       243 ~~L~~L~Ls~n~-l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L  321 (820)
                      .+|++||+++.. +....|..++...|+|+.|.+++-.+...=-...+.++++|..||+|+.+++.+ .+++++++|++|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence            445555555542 233445555666666666666665443110111244566677777777766666 556666777666


Q ss_pred             EcCCCCCCC-cchhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccC
Q 045139          322 YQDSNNLTD-LLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQ  400 (820)
Q Consensus       322 ~L~~n~l~~-~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~  400 (820)
                      .+.+=.+.. ..-..+.+++     +|+.||+|..+.....                           .+....-+.-..
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~-----~L~vLDIS~~~~~~~~---------------------------~ii~qYlec~~~  248 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLK-----KLRVLDISRDKNNDDT---------------------------KIIEQYLECGMV  248 (699)
T ss_pred             hccCCCCCchhhHHHHhccc-----CCCeeeccccccccch---------------------------HHHHHHHHhccc
Confidence            665544433 1112233343     4555555444332110                           011111122234


Q ss_pred             CCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCc
Q 045139          401 LSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLS  435 (820)
Q Consensus       401 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls  435 (820)
                      +|.|+.||.++..+.+.+-+..+..-|+|+.+.+-
T Consensus       249 LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~  283 (699)
T KOG3665|consen  249 LPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL  283 (699)
T ss_pred             CccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence            66777787777777665544445555666555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.52  E-value=0.00018  Score=67.38  Aligned_cols=80  Identities=28%  Similarity=0.401  Sum_probs=35.7

Q ss_pred             CCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcc--cCCCCcCcCCCcE
Q 045139          295 LSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRG--SLPDITLFSSLKE  372 (820)
Q Consensus       295 L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~--~~p~~~~l~~L~~  372 (820)
                      ...+||++|.+..++. |..++.|.+|.+.+|+|+.+.|.--..++     +|+.|.|.+|.+..  .+..+..+|.|++
T Consensus        44 ~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p-----~l~~L~LtnNsi~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLP-----NLKTLILTNNSIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             cceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhcc-----ccceEEecCcchhhhhhcchhccCCccce
Confidence            3444444444443321 34444555555555555544443322333     45555555555442  1222444555555


Q ss_pred             EecCCCcc
Q 045139          373 LHLYDNML  380 (820)
Q Consensus       373 L~l~~n~L  380 (820)
                      |.+-+|..
T Consensus       118 Ltll~Npv  125 (233)
T KOG1644|consen  118 LTLLGNPV  125 (233)
T ss_pred             eeecCCch
Confidence            54444433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.27  E-value=0.00027  Score=66.14  Aligned_cols=85  Identities=22%  Similarity=0.172  Sum_probs=54.2

Q ss_pred             CCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCeee
Q 045139          116 HLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVR  195 (820)
Q Consensus       116 ~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~  195 (820)
                      ....+||++|.+..  + ..+..+.+|.+|.|++|.|+..-|.--.-+++|+.|.|.+|.....+.+..+..+++|++|.
T Consensus        43 ~~d~iDLtdNdl~~--l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhh--c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            45678888888754  2 34667888999999999998555543344677888888888333333344444455555555


Q ss_pred             CCCccCCC
Q 045139          196 LNQVNLGE  203 (820)
Q Consensus       196 l~~n~l~~  203 (820)
                      +-+|.+..
T Consensus       120 ll~Npv~~  127 (233)
T KOG1644|consen  120 LLGNPVEH  127 (233)
T ss_pred             ecCCchhc
Confidence            54444433

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.22  E-value=0.00021  Score=69.88  Aligned_cols=113  Identities=21%  Similarity=0.189  Sum_probs=66.1

Q ss_pred             ccccccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCC--CCCCCCCccCCCCCCCcEEeCCCCccccccchhh
Q 045139          107 ISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNA--GFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEW  184 (820)
Q Consensus       107 i~~~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~  184 (820)
                      +..-.-.+..|+.|++.+..++..   ..+-.|++|++|.+|.|  ++++.++.....+++|++|++++|..-....+..
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p  111 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP  111 (260)
T ss_pred             cccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch
Confidence            333333444555555555555432   23345678888888888  6666666666677888888888874333445555


Q ss_pred             ccCCCCCCeeeCCCccCCCCccH-HHHhCCCCCCCEEEc
Q 045139          185 LSQLSFLEYVRLNQVNLGEATDW-LQVVSQLPSLTELQL  222 (820)
Q Consensus       185 l~~l~~L~~L~l~~n~l~~~~~~-~~~l~~l~~L~~L~L  222 (820)
                      +..+.+|..|++..|........ -..+.-+++|+.|+-
T Consensus       112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            66666666777766665543222 234445566666543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.76  E-value=0.0053  Score=55.46  Aligned_cols=123  Identities=13%  Similarity=0.153  Sum_probs=56.9

Q ss_pred             cccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCC
Q 045139          589 NCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLP  668 (820)
Q Consensus       589 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~  668 (820)
                      .+|.++++|+.+.+.. .+...-..+|..+++|+.+.+.++ +.......|.++++++.+.+.. .+. .++...+..++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~   81 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCT   81 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccc
Confidence            3566666777777764 455455556777767777777664 5555556677776777777765 333 33333333577


Q ss_pred             CccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccc
Q 045139          669 DLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAM  718 (820)
Q Consensus       669 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  718 (820)
                      +|+.+++..+ +.......+.+. .|+.+.+.. .+...-..+|.+.++|
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            7777777655 443444556665 777777665 3333333455555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.70  E-value=9.2e-05  Score=72.43  Aligned_cols=103  Identities=22%  Similarity=0.195  Sum_probs=70.4

Q ss_pred             CCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCe
Q 045139          114 LQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEY  193 (820)
Q Consensus       114 l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~  193 (820)
                      +...++|+..++.+.++   ..+.+++.|++|.||-|.|+..-  .+..|++|++|+|..|.......+..+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            45667788888888764   23457888999999999888433  36788888888888885444556667778888888


Q ss_pred             eeCCCccCCCC---ccHHHHhCCCCCCCEEE
Q 045139          194 VRLNQVNLGEA---TDWLQVVSQLPSLTELQ  221 (820)
Q Consensus       194 L~l~~n~l~~~---~~~~~~l~~l~~L~~L~  221 (820)
                      |.|..|...+.   ..-...+..+|+|+.||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            88877765443   12233455566666554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.47  E-value=0.0017  Score=63.79  Aligned_cols=77  Identities=29%  Similarity=0.308  Sum_probs=36.3

Q ss_pred             CCccEEECcCC--CCCCchhhhhhccCCCCcEEEccCCcccC--CCCCCCCCCCCCCCEEECCCCCCCCcch----hhhc
Q 045139          243 RSLAHLDLSLN--DVSNSVYYWLFNSSSSLVYLDLSSNKLQG--PIPDSAFPNPTSLSYLDLSNNQLVSVPK----SFRN  314 (820)
Q Consensus       243 ~~L~~L~Ls~n--~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g--~ip~~~l~~l~~L~~L~Ls~n~l~~ip~----~l~~  314 (820)
                      ++|+.|.++.|  ++.+.++.-.-.. ++|++|++++|++..  .+++  +..+.+|..|++.+|..+.+-+    .|.-
T Consensus        65 p~LkkL~lsdn~~~~~~~l~vl~e~~-P~l~~l~ls~Nki~~lstl~p--l~~l~nL~~Ldl~n~~~~~l~dyre~vf~l  141 (260)
T KOG2739|consen   65 PKLKKLELSDNYRRVSGGLEVLAEKA-PNLKVLNLSGNKIKDLSTLRP--LKELENLKSLDLFNCSVTNLDDYREKVFLL  141 (260)
T ss_pred             chhhhhcccCCcccccccceehhhhC-CceeEEeecCCccccccccch--hhhhcchhhhhcccCCccccccHHHHHHHH
Confidence            55555666555  3333333222222 466666666666541  1111  3344555566666655553211    2444


Q ss_pred             cCCCcEEE
Q 045139          315 LCRLRALY  322 (820)
Q Consensus       315 l~~L~~L~  322 (820)
                      +++|++|+
T Consensus       142 l~~L~~LD  149 (260)
T KOG2739|consen  142 LPSLKYLD  149 (260)
T ss_pred             hhhhcccc
Confidence            45555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.46  E-value=0.0001  Score=72.10  Aligned_cols=57  Identities=23%  Similarity=0.188  Sum_probs=25.2

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCccc
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFI  632 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  632 (820)
                      +.+.|++.++.++..  .....++.|++|.||-|+|+..-  .+..|+.|++|+|..|.|.
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~   76 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE   76 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc
Confidence            344555555555422  12334455555555555554222  2344444444444444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.40  E-value=0.0085  Score=54.10  Aligned_cols=117  Identities=15%  Similarity=0.139  Sum_probs=67.1

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      +++.+.+.. .+......+|.++++|+.+.+.++ +......+|..+++++.+.+.+ .+.......|..+++|+.+++.
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~   89 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP   89 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred             CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence            688888875 566566778999999999999886 6656667888998999999976 5554556778889999999998


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCC
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQ  695 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  695 (820)
                      .+ +. .++.....+. .|+.+.+.. .+.......|.++++|+
T Consensus        90 ~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   90 SN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             TT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             cc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            76 55 4554444355 999999886 44445556777776663

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.89  E-value=0.0019  Score=73.45  Aligned_cols=137  Identities=25%  Similarity=0.196  Sum_probs=68.8

Q ss_pred             CCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCC-CCCCCCccccccccCCcCCccEEECcCCC-CCCchhhhhh
Q 045139          187 QLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGC-NLPSVIASSSVSFSNSSRSLAHLDLSLND-VSNSVYYWLF  264 (820)
Q Consensus       187 ~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~~~  264 (820)
                      .++.|+.+.+..+.-.....+......++.|++|+++++ ......+.....+...+++|+.++++... +++..-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            356666666665543332224455566777777777662 22221111111233333666777776665 5555555555


Q ss_pred             ccCCCCcEEEccCCc-ccCCCCCCCCCCCCCCCEEECCCCCCC---CcchhhhccCCCcEEEc
Q 045139          265 NSSSSLVYLDLSSNK-LQGPIPDSAFPNPTSLSYLDLSNNQLV---SVPKSFRNLCRLRALYQ  323 (820)
Q Consensus       265 ~~~~~L~~L~Ls~n~-l~g~ip~~~l~~l~~L~~L~Ls~n~l~---~ip~~l~~l~~L~~L~L  323 (820)
                      ..+++|++|.+.++. +++.--......++.|++|+++++...   .+.....++++++.|.+
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~  328 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL  328 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence            555567777766555 332211111334566677777666443   23333444555555443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.48  E-value=0.0045  Score=36.21  Aligned_cols=20  Identities=50%  Similarity=0.634  Sum_probs=12.4

Q ss_pred             CCEEeCCCCccccCCcccccC
Q 045139          782 LISLNLSKNSLTGPIPSKIGG  802 (820)
Q Consensus       782 L~~L~Ls~N~l~~~ip~~l~~  802 (820)
                      |++|||++|+++ .+|++|++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            566666666666 56655544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.12  E-value=0.0073  Score=35.30  Aligned_cols=17  Identities=65%  Similarity=0.950  Sum_probs=7.5

Q ss_pred             CcEEEccCCcccCCCCCC
Q 045139          270 LVYLDLSSNKLQGPIPDS  287 (820)
Q Consensus       270 L~~L~Ls~n~l~g~ip~~  287 (820)
                      |++||+++|+++ .+|.+
T Consensus         2 L~~Ldls~n~l~-~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSS   18 (22)
T ss_dssp             ESEEEETSSEES-EEGTT
T ss_pred             ccEEECCCCcCE-eCChh
Confidence            344444444444 44443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.74  E-value=0.00054  Score=75.87  Aligned_cols=23  Identities=30%  Similarity=0.393  Sum_probs=15.6

Q ss_pred             ccccccCCCCCCEEecCCCcCcc
Q 045139          394 LTKSIGQLSQLELLDVASNSLKG  416 (820)
Q Consensus       394 ~~~~l~~l~~L~~L~L~~n~l~~  416 (820)
                      +.+.+..++.++++.++.|.+..
T Consensus       282 L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  282 LAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHhhhHHHHHhhcccCcccc
Confidence            34455566778888888887764

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.47  E-value=0.013  Score=66.65  Aligned_cols=115  Identities=25%  Similarity=0.245  Sum_probs=73.6

Q ss_pred             CCCCCCEEECcCCCC-CCcccCccccCCCCCCEEeccCC-CCCCCCC----ccCCCCCCCcEEeCCCCccccccchhhcc
Q 045139          113 GLQHLNYLNMKYNDF-GGKQIPAFIGSLKNIRHLDLSNA-GFTGRVP----YQLGNLTSLQYLDLSFNFDMLSKKLEWLS  186 (820)
Q Consensus       113 ~l~~L~~L~Ls~n~l-~~~~~p~~i~~l~~L~~L~Ls~n-~l~~~~p----~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~  186 (820)
                      .++.|+.|.+.++.- ....+-+....+++|+.|+++++ ......+    .....+.+|++|+++++.......+..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            467888888877633 22112234567788888888873 2211111    23345688888888887434555555555


Q ss_pred             C-CCCCCeeeCCCcc-CCCCccHHHHhCCCCCCCEEEcCCCCCC
Q 045139          187 Q-LSFLEYVRLNQVN-LGEATDWLQVVSQLPSLTELQLRGCNLP  228 (820)
Q Consensus       187 ~-l~~L~~L~l~~n~-l~~~~~~~~~l~~l~~L~~L~Ls~n~l~  228 (820)
                      . +++|++|.+..+. +++ ..+.....+++.|++|++++|...
T Consensus       266 ~~c~~L~~L~l~~c~~lt~-~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTD-EGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hhCCCcceEccCCCCccch-hHHHHHHHhcCcccEEeeecCccc
Confidence            4 7888888877666 333 345666677888888888887654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.47  E-value=0.088  Score=28.47  Aligned_cols=14  Identities=64%  Similarity=0.807  Sum_probs=4.8

Q ss_pred             CCEEECCCCCCCCc
Q 045139          295 LSYLDLSNNQLVSV  308 (820)
Q Consensus       295 L~~L~Ls~n~l~~i  308 (820)
                      |+.|++++|+++++
T Consensus         3 L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    3 LRTLDLSNNRLTSL   16 (17)
T ss_dssp             -SEEEETSS--SSE
T ss_pred             cCEEECCCCCCCCC
Confidence            44444444444433

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.41  E-value=0.0089  Score=57.38  Aligned_cols=56  Identities=16%  Similarity=0.172  Sum_probs=41.5

Q ss_pred             EEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCcCc
Q 045139          760 KSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLM  817 (820)
Q Consensus       760 ~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~  817 (820)
                      ..||+|.|++. ..| .++++..+..+++..|..+ ..|.++++++.++++|+-+|+|.
T Consensus        68 ~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   68 VRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             HHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence            66777777776 666 7777777777777777776 66777777777777777777764

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.54  E-value=0.17  Score=27.38  Aligned_cols=13  Identities=38%  Similarity=0.759  Sum_probs=4.5

Q ss_pred             CCCEEECCCCcCc
Q 045139          644 QLTVLDLGHNKIS  656 (820)
Q Consensus       644 ~L~~L~Ls~N~l~  656 (820)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444443

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=88.55  E-value=0.0089  Score=66.38  Aligned_cols=37  Identities=35%  Similarity=0.436  Sum_probs=19.0

Q ss_pred             CcEEEccCCcccCCCCC---CCCCCCCCCCEEECCCCCCC
Q 045139          270 LVYLDLSSNKLQGPIPD---SAFPNPTSLSYLDLSNNQLV  306 (820)
Q Consensus       270 L~~L~Ls~n~l~g~ip~---~~l~~l~~L~~L~Ls~n~l~  306 (820)
                      +..|.|.+|.+......   .++.....|..|++++|.+.
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~  128 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG  128 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence            66677777766532111   11334455555555555555

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.94  E-value=0.44  Score=28.97  Aligned_cols=20  Identities=35%  Similarity=0.524  Sum_probs=12.0

Q ss_pred             CCCCEEECCCCcCccccCcch
Q 045139          643 TQLTVLDLGHNKISGIIPAWI  663 (820)
Q Consensus       643 ~~L~~L~Ls~N~l~~~~p~~l  663 (820)
                      ++|++|+|++|+|+ .+|...
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~   21 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHH
Confidence            45666666666666 555543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.94  E-value=0.44  Score=28.97  Aligned_cols=20  Identities=35%  Similarity=0.524  Sum_probs=12.0

Q ss_pred             CCCCEEECCCCcCccccCcch
Q 045139          643 TQLTVLDLGHNKISGIIPAWI  663 (820)
Q Consensus       643 ~~L~~L~Ls~N~l~~~~p~~l  663 (820)
                      ++|++|+|++|+|+ .+|...
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~   21 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHH
Confidence            45666666666666 555543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.57  E-value=0.56  Score=28.53  Aligned_cols=19  Identities=58%  Similarity=0.732  Sum_probs=10.9

Q ss_pred             CCCCEEECCCCCCCCcchh
Q 045139          293 TSLSYLDLSNNQLVSVPKS  311 (820)
Q Consensus       293 ~~L~~L~Ls~n~l~~ip~~  311 (820)
                      ++|++|+|++|+++.+|+.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4556666666666655543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.57  E-value=0.56  Score=28.53  Aligned_cols=19  Identities=58%  Similarity=0.732  Sum_probs=10.9

Q ss_pred             CCCCEEECCCCCCCCcchh
Q 045139          293 TSLSYLDLSNNQLVSVPKS  311 (820)
Q Consensus       293 ~~L~~L~Ls~n~l~~ip~~  311 (820)
                      ++|++|+|++|+++.+|+.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4556666666666655543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.92  E-value=0.023  Score=54.71  Aligned_cols=83  Identities=19%  Similarity=0.214  Sum_probs=45.1

Q ss_pred             cCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEe
Q 045139          619 CMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLD  698 (820)
Q Consensus       619 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  698 (820)
                      ...+.||++.|++. .....|+-++.|..||++.|++. ..|..++ ....+..+++..|..+ ..|.+++..+.+++++
T Consensus        42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~-q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAK-QQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHH-HHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            34444455544443 22334445555566666666655 5555555 3555555555555555 5566666666666666


Q ss_pred             CcCCCCc
Q 045139          699 LSQNNIS  705 (820)
Q Consensus       699 Ls~N~l~  705 (820)
                      +-.|.+.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            6666554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=82.52  E-value=0.44  Score=28.34  Aligned_cols=16  Identities=38%  Similarity=0.567  Sum_probs=7.2

Q ss_pred             CCCCEEECCCCcCccc
Q 045139          643 TQLTVLDLGHNKISGI  658 (820)
Q Consensus       643 ~~L~~L~Ls~N~l~~~  658 (820)
                      ++|++|+|++|+|++.
T Consensus         2 ~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    2 PNLETLDLSNNQITDE   17 (24)
T ss_dssp             TT-SEEE-TSSBEHHH
T ss_pred             CCCCEEEccCCcCCHH
Confidence            4455555555555443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.88  E-value=0.36  Score=45.94  Aligned_cols=81  Identities=23%  Similarity=0.208  Sum_probs=41.9

Q ss_pred             CCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCC-CCCccCC-CCCCCcEEeCCCCccccccchhhccCCCCCCee
Q 045139          117 LNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTG-RVPYQLG-NLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYV  194 (820)
Q Consensus       117 L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~-~~p~~l~-~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L  194 (820)
                      ++.+|-++..+..+ --+.+..++.++.|.+.+|.--+ .--+.++ -.++|+.|++++|..+.......+.++++|+.|
T Consensus       103 IeaVDAsds~I~~e-Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  103 IEAVDASDSSIMYE-GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             EEEEecCCchHHHH-HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            45566666655443 12234555556666666553221 0001111 235666666666666666666666666666666


Q ss_pred             eCCC
Q 045139          195 RLNQ  198 (820)
Q Consensus       195 ~l~~  198 (820)
                      .+++
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            5543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	820
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-33
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-20
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-33
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-20
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		9e-12
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-06
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		2e-07
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		2e-07
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		3e-06
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		4e-05
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		5e-04
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		5e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  140 bits (352), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 176/615 (28%), Positives = 271/615 (44%), Gaps = 101/615 (16%)
Query: 287 SAFPNPTSLSYLDLSNNQL---VSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCS 343
           S F    SL+ LDLS N L   V+   S  +   L+ L   SN L    P    K+S   
Sbjct: 91  SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPG---KVSGGL 145
Query: 344 R-DTLEILQLNSNMLRGS------LPDITLFSSLKELHLYDNM------------LDVLY 384
           + ++LE+L L++N + G+      L D      LK L +  N             L+ L 
Sbjct: 146 KLNSLEVLDLSANSISGANVVGWVLSDGC--GELKHLAISGNKISGDVDVSRCVNLEFLD 203
Query: 385 LNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFG 444
           +++N F+ T    +G  S L+ LD++ N L G  + A +S  + L  L++S N  +    
Sbjct: 204 VSSNNFS-TGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFV---- 257
Query: 445 SGWVPSFELNIIR---LGACKQGPQFPKWLQTQ-NKFSELDVSAAEISDTVPNWFWDLSP 500
            G +P   L  ++   L   K   + P +L    +  + LD+S       VP +F   S 
Sbjct: 258 -GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 316
Query: 501 ------------------------NLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANS 536
                                    L  L+LS N F+G LP+     +A    +DLS+N+
Sbjct: 317 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 376
Query: 537 FEGPIPP-----IPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCS 591
           F GPI P        T+  L L  N F+G +        E    L LS N LSG +P+  
Sbjct: 377 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE-LVSLHLSFNYLSGTIPSSL 435
Query: 592 KNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651
            +  KL  L L  N   G+IP  + +   + +L L  N   GE+PS + + T L  + L 
Sbjct: 436 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 495
Query: 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQC 711
           +N+++G IP WIG  L +L +L L +N+F G +P ++   + +  LDL+ N  +GT+P  
Sbjct: 496 NNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Query: 712 LNNLTA-MTANKSSNAMIRY----PLRTDYYNDHALLVWKRKDSEYRNTL---------- 756
           +   +  + AN  +     Y     ++ + +    LL ++   SE  N L          
Sbjct: 555 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 614
Query: 757 --------------GLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIG 801
                         G +  +D+S N L G IP E+ S+  L  LNL  N ++G IP ++G
Sbjct: 615 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 674
Query: 802 GLTLLNSLDLSKNML 816
            L  LN LDLS N L
Sbjct: 675 DLRGLNILDLSSNKL 689

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 97.1 bits (240), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 133/445 (29%), Positives = 204/445 (45%), Gaps = 85/445 (19%)
Query: 384 YLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITE-AHLSNLSRLTYLDLSHNSLILN 442
           +L+N+   G+++      + L  LD++ NSL G +T    L + S L +L++S N+L  +
Sbjct: 80  FLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--D 136
Query: 443 FGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDT-VPNWFW-DLSP 500
           F        +LN + +                     LD+SA  IS   V  W   D   
Sbjct: 137 FPGKVSGGLKLNSLEV---------------------LDLSANSISGANVVGWVLSDGCG 175
Query: 501 NLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSG 560
            L +L +S N  +G   D+          +D+S+N+F   IP               F G
Sbjct: 176 ELKHLAISGNKISG---DVDVSRCVNLEFLDVSSNNFSTGIP---------------FLG 217
Query: 561 SLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIP----DSMD 616
             S L        ++LD+S N LSG+         +L +LN+++N+F G IP     S+ 
Sbjct: 218 DCSAL--------QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQ 269
Query: 617 FNCMMLSLHLRNNSFIGELPSSVK-SFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSL 675
           +      L L  N F GE+P  +  +   LT LDL  N   G +P + G     L  L+L
Sbjct: 270 Y------LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS-LLESLAL 322
Query: 676 RSNNFHGRVPVQ-VCHLQRIQVLDLSQNNISGTVPQCLNNLTA--MTANKSSNAMIRYPL 732
            SNNF G +P+  +  ++ ++VLDLS N  SG +P+ L NL+A  +T + SSN     P+
Sbjct: 323 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF-SGPI 381
Query: 733 RTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTS-LVGLISLNLSKNS 791
             +   +             +NTL   + + L +N   G+IP   S    L+SL+LS N 
Sbjct: 382 LPNLCQNP------------KNTL---QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 426
Query: 792 LTGPIPSKIGGLTLLNSLDLSKNML 816
           L+G IPS +G L+ L  L L  NML
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNML 451

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  139 bits (350), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 176/615 (28%), Positives = 271/615 (44%), Gaps = 101/615 (16%)
Query: 287 SAFPNPTSLSYLDLSNNQL---VSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCS 343
           S F    SL+ LDLS N L   V+   S  +   L+ L   SN L    P    K+S   
Sbjct: 94  SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPG---KVSGGL 148
Query: 344 R-DTLEILQLNSNMLRGS------LPDITLFSSLKELHLYDNM------------LDVLY 384
           + ++LE+L L++N + G+      L D      LK L +  N             L+ L 
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGC--GELKHLAISGNKISGDVDVSRCVNLEFLD 206
Query: 385 LNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFG 444
           +++N F+ T    +G  S L+ LD++ N L G  + A +S  + L  L++S N  +    
Sbjct: 207 VSSNNFS-TGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFV---- 260
Query: 445 SGWVPSFELNIIR---LGACKQGPQFPKWLQTQ-NKFSELDVSAAEISDTVPNWFWDLSP 500
            G +P   L  ++   L   K   + P +L    +  + LD+S       VP +F   S 
Sbjct: 261 -GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319
Query: 501 ------------------------NLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANS 536
                                    L  L+LS N F+G LP+     +A    +DLS+N+
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379
Query: 537 FEGPIPP-----IPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCS 591
           F GPI P        T+  L L  N F+G +        E    L LS N LSG +P+  
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE-LVSLHLSFNYLSGTIPSSL 438
Query: 592 KNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651
            +  KL  L L  N   G+IP  + +   + +L L  N   GE+PS + + T L  + L 
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498
Query: 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQC 711
           +N+++G IP WIG  L +L +L L +N+F G +P ++   + +  LDL+ N  +GT+P  
Sbjct: 499 NNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Query: 712 LNNLTA-MTANKSSNAMIRY----PLRTDYYNDHALLVWKRKDSEYRNTL---------- 756
           +   +  + AN  +     Y     ++ + +    LL ++   SE  N L          
Sbjct: 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617
Query: 757 --------------GLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIG 801
                         G +  +D+S N L G IP E+ S+  L  LNL  N ++G IP ++G
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 677
Query: 802 GLTLLNSLDLSKNML 816
            L  LN LDLS N L
Sbjct: 678 DLRGLNILDLSSNKL 692

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 97.1 bits (240), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 133/445 (29%), Positives = 204/445 (45%), Gaps = 85/445 (19%)
Query: 384 YLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITE-AHLSNLSRLTYLDLSHNSLILN 442
           +L+N+   G+++      + L  LD++ NSL G +T    L + S L +L++S N+L  +
Sbjct: 83  FLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--D 139
Query: 443 FGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDT-VPNWFW-DLSP 500
           F        +LN + +                     LD+SA  IS   V  W   D   
Sbjct: 140 FPGKVSGGLKLNSLEV---------------------LDLSANSISGANVVGWVLSDGCG 178
Query: 501 NLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSG 560
            L +L +S N  +G   D+          +D+S+N+F   IP               F G
Sbjct: 179 ELKHLAISGNKISG---DVDVSRCVNLEFLDVSSNNFSTGIP---------------FLG 220
Query: 561 SLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIP----DSMD 616
             S L        ++LD+S N LSG+         +L +LN+++N+F G IP     S+ 
Sbjct: 221 DCSAL--------QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQ 272
Query: 617 FNCMMLSLHLRNNSFIGELPSSVK-SFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSL 675
           +      L L  N F GE+P  +  +   LT LDL  N   G +P + G     L  L+L
Sbjct: 273 Y------LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS-LLESLAL 325
Query: 676 RSNNFHGRVPVQ-VCHLQRIQVLDLSQNNISGTVPQCLNNLTA--MTANKSSNAMIRYPL 732
            SNNF G +P+  +  ++ ++VLDLS N  SG +P+ L NL+A  +T + SSN     P+
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF-SGPI 384
Query: 733 RTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTS-LVGLISLNLSKNS 791
             +   +             +NTL   + + L +N   G+IP   S    L+SL+LS N 
Sbjct: 385 LPNLCQNP------------KNTL---QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429
Query: 792 LTGPIPSKIGGLTLLNSLDLSKNML 816
           L+G IPS +G L+ L  L L  NML
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNML 454

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 68.9 bits (167), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 118/257 (45%), Gaps = 31/257 (12%)
Query: 562 LSFLCQISDEHFRY--LDLSDNLLSGE--LPNCSKNWQKLTVLNLAN-NKFSGKIPDSMD 616
           L  LC    + +R   LDLS   L     +P+   N   L  L +   N   G IP ++ 
Sbjct: 39  LGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA 98
Query: 617 FNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLR 676
               +  L++ + +  G +P  +     L  LD  +N +SG +P  I  SLP+LV ++  
Sbjct: 99  KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFD 157
Query: 677 SNNFHGRVPVQVCHLQRI-QVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTD 735
            N   G +P       ++   + +S+N ++G +P    NL     + S N +        
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML-------- 209
Query: 736 YYNDHALLVWKRKDSE----YRNTL-------GLVKSI---DLSSNRLYGEIPE-VTSLV 780
              D ++L    K+++     +N+L       GL K++   DL +NR+YG +P+ +T L 
Sbjct: 210 -EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268
Query: 781 GLISLNLSKNSLTGPIP 797
            L SLN+S N+L G IP
Sbjct: 269 FLHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 71/188 (37%), Gaps = 41/188 (21%)
Query: 629 NSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV 688
           N+ +G +P ++   TQL  L + H  +SG IP ++   +  LV L    N   G +P  +
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIKTLVTLDFSYNALSGTLPPSI 145
Query: 689 CHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRK 748
             L  +  +    N ISG +P                                       
Sbjct: 146 SSLPNLVGITFDGNRISGAIPD-------------------------------------- 167
Query: 749 DSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNS 808
              Y +   L  S+ +S NRL G+IP   + + L  ++LS+N L G      G       
Sbjct: 168 --SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225
Query: 809 LDLSKNML 816
           + L+KN L
Sbjct: 226 IHLAKNSL 233

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 86/191 (45%), Gaps = 29/191 (15%)
Query: 284 IPDSAFPNPTSLSYLDLSNN-QLVSV-PKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSN 341
           I  +AF     L  LDLS+N QL SV P +F  L RL  L+ D   L +L P LF  L+ 
Sbjct: 70  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA- 128
Query: 342 CSRDTLEILQLNSNMLRGSLPDITL--FSSLKELHLYDNM--------------LDVLYL 385
                L+ L L  N L+ +LPD T     +L  L L+ N               LD L L
Sbjct: 129 ----ALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 183
Query: 386 NNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGS 445
           + NR       +   L +L  L + +N+L  + TEA L+ L  L YL L+ N  + +  +
Sbjct: 184 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA-LAPLRALQYLRLNDNPWVCDCRA 242
Query: 446 ----GWVPSFE 452
                W+  F 
Sbjct: 243 RPLWAWLQKFR 253

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 86/191 (45%), Gaps = 29/191 (15%)
Query: 284 IPDSAFPNPTSLSYLDLSNN-QLVSV-PKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSN 341
           I  +AF     L  LDLS+N QL SV P +F  L RL  L+ D   L +L P LF  L+ 
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA- 129
Query: 342 CSRDTLEILQLNSNMLRGSLPDITL--FSSLKELHLYDNM--------------LDVLYL 385
                L+ L L  N L+ +LPD T     +L  L L+ N               LD L L
Sbjct: 130 ----ALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184
Query: 386 NNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGS 445
           + NR       +   L +L  L + +N+L  + TEA L+ L  L YL L+ N  + +  +
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA-LAPLRALQYLRLNDNPWVCDCRA 243
Query: 446 ----GWVPSFE 452
                W+  F 
Sbjct: 244 RPLWAWLQKFR 254

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 18/167 (10%)
Query: 246 AHLDLSLNDVSNSVYYWLFNXXXXXXXXXXXXNKLQGPIPDSAFPNPTSLSYLDLSNNQL 305
            +LDL  N +  S+   +F+            NKLQ  +P+  F   TSL+YL+LS NQL
Sbjct: 31  TYLDLETNSL-KSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQL 88
Query: 306 VSVPKS-FRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDI 364
            S+P   F  L +L+ L  ++N L  L   +F KL+      L+ L+L  N L+ S+PD 
Sbjct: 89  QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ-----LKDLRLYQNQLK-SVPDG 142
Query: 365 TL--FSSLKELHLYDNMLD-----VLYLNN--NRFTGTLTKSIGQLS 402
                +SL+ + L+DN  D     + YL+   N+ +G +  S G ++
Sbjct: 143 VFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVA 189

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 17/135 (12%)
Query: 278 NKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTDLLPNLF 336
           N+LQ  +PD  F   T+L+YL+L++NQL S+PK  F  L  L  L    N L  L   +F
Sbjct: 119 NQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177
Query: 337 LKLSNCSRDTLEILQLNSNMLRGSLPDITL--FSSLKELHLYDNMLD-----VLYLNN-- 387
            KL+      L+ L+L  N L+ S+PD      +SL+ + L+DN  D     + YL+   
Sbjct: 178 DKLTQ-----LKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWI 231
Query: 388 NRFTGTLTKSIGQLS 402
           N+ +G +  S G ++
Sbjct: 232 NKHSGVVRNSAGSVA 246

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 61/116 (52%), Gaps = 15/116 (12%)
Query: 278 NKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTDLLPNLF 336
           N+LQ  +PD  F   T+L+YL L +NQL S+PK  F  L  L  L  D+N L  L   +F
Sbjct: 119 NQLQS-LPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVF 177
Query: 337 LKLSNCSRDTLEILQLNSNMLRGSLPDITL--FSSLKELHLYDN-----MLDVLYL 385
            KL+      L+ L LN N L+ S+PD      +SL  + L +N       D+LYL
Sbjct: 178 DKLTQ-----LKQLSLNDNQLK-SVPDGVFDRLTSLTHIWLLNNPWDCACSDILYL 227

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 83/176 (47%), Gaps = 34/176 (19%)
Query: 287 SAFPN--PTSLSYLDLSNNQLVSVP-KSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCS 343
           +A P+  P     LDL +N+L S+P K+F  L +LR LY + N L  L   +F +L N  
Sbjct: 29  TAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN-- 86
Query: 344 RDTLEILQLNSNMLRGSLPDITLFS---SLKELHLYDNMLDVLYLNNNRFTGTLTK---- 396
              LE L +  N L+ +LP I +F    +L EL L  N L  L     R   +LTK    
Sbjct: 87  ---LETLWVTDNKLQ-ALP-IGVFDQLVNLAELRLDRNQLKSLP---PRVFDSLTKLTYL 138
Query: 397 SIG-------------QLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
           S+G             +L+ L+ L + +N LK  + E     L+ L  L L +N L
Sbjct: 139 SLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQL 193

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	820
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-161
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-100
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-92
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-71
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-73
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-60
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-45
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-44
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-64
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-51
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-45
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-60
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-59
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-59
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-56
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-53
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-43
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-57
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-57
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-54
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-52
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-48
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-46
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-36
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-50
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-47
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-35
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-45
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-45
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-40
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-36
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-34
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-28
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-44
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-36
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-36
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-42
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-26
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-31
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-31
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-31
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-28
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-28
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-28
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-28
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-27
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-24
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-26
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-22
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-18
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-17
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-21
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-21
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-21
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-19
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-20
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-19
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-17
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-20
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-15
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-18
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-16
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-14
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-17
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-14
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-14
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-13
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-13
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-11
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-12
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-11
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	7e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	8e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-10
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	4e-08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-07
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	4e-08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	6e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	9e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	6e-05

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  487 bits (1257), Expect = e-161
 Identities = 190/787 (24%), Positives = 306/787 (38%), Gaps = 138/787 (17%)

Query: 41  CIERERQALLMFKQGLIDEYGHLSSWGNEDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSY 100
            + RE   L+ FK  L D+   L  W +  +    C + GV+C +    VT ++L  +  
Sbjct: 9   SLYREIHQLISFKDVLPDK-NLLPDWSSNKN---PCTFDGVTCRD--DKVTSIDLSSKPL 62

Query: 101 MPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVP--Y 158
                 +SSSL+ L  L  L +  +   G  +  F     ++  LDLS    +G V    
Sbjct: 63  NVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGF-KCSASLTSLDLSRNSLSGPVTTLT 120

Query: 159 QLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNL-GEATDWLQVVSQLPSL 217
            LG+ + L++L++S N      K+    +L+ LE + L+  ++ G       +      L
Sbjct: 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL 180

Query: 218 TELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSS 277
             L + G  +     S  V  S                             +L +LD+SS
Sbjct: 181 KHLAISGNKI-----SGDVDVSRCV--------------------------NLEFLDVSS 209

Query: 278 NKLQGPIPDSAFPNPTSLSYLDLSNNQLV-SVPKSFRNLCRLRALYQDSNNLTDLLPNLF 336
           N     IP     + ++L +LD+S N+L     ++      L+ L   SN     +P   
Sbjct: 210 NNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-- 265

Query: 337 LKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTK 396
                     L+ L L  N   G +PD  L  +          L  L L+ N F G +  
Sbjct: 266 ---LPLKS--LQYLSLAENKFTGEIPD-FLSGACD-------TLTGLDLSGNHFYGAVPP 312

Query: 397 SIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNII 456
             G  S LE L ++SN+  G +    L  +  L  LDLS N                   
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF----------------- 355

Query: 457 RLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGML 516
                                          S  +P    +LS +L  L+LS N+F+G +
Sbjct: 356 -------------------------------SGELPESLTNLSASLLTLDLSSNNFSGPI 384

Query: 517 P-DLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRY 575
             +L Q       E+ L  N F G IPP                     L   S      
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPP--------------------TLSNCS--ELVS 422

Query: 576 LDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGEL 635
           L LS N LSG +P+   +  KL  L L  N   G+IP  + +   + +L L  N   GE+
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482

Query: 636 PSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQ 695
           PS + + T L  + L +N+++G IP WIG  L +L +L L +N+F G +P ++   + + 
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLI 541

Query: 696 VLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLR-----TDYYNDHALLVWKRKDS 750
            LDL+ N  +GT+P  +   +   A           ++      + +    LL ++   S
Sbjct: 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601

Query: 751 EYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSL 809
           E  N L      +++S    G       +   ++ L++S N L+G IP +IG +  L  L
Sbjct: 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661

Query: 810 DLSKNML 816
           +L  N +
Sbjct: 662 NLGHNDI 668

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  326 bits (839), Expect = e-100
 Identities = 163/735 (22%), Positives = 254/735 (34%), Gaps = 169/735 (22%)

Query: 99  SYMPLRGNIS-SSLIGLQHLNYLNMKYNDFGGKQIPAFI---GSLKNIRHLDLSNAGFTG 154
           S   L      S  + L  L  L++  N   G               ++HL +S    +G
Sbjct: 134 SSNTLDFPGKVSGGLKLNSLEVLDLSANSISG-ANVVGWVLSDGCGELKHLAISGNKISG 192

Query: 155 RVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNL-GEATDWLQVVSQ 213
            V   +    +L++LD+S N    S  + +L   S L+++ ++   L G+ +  +   S 
Sbjct: 193 DVD--VSRCVNLEFLDVSSN--NFSTGIPFLGDCSALQHLDISGNKLSGDFSRAI---ST 245

Query: 214 LPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYL 273
              L  L +             +       SL +L L+ N  +  +  +L  +  +L  L
Sbjct: 246 CTELKLLNISSNQF-----VGPIPPLPLK-SLQYLSLAENKFTGEIPDFLSGACDTLTGL 299

Query: 274 DLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLV-SVPK-SFRNLCRLRALYQDSNNLTDL 331
           DLS N   G +P   F + + L  L LS+N     +P  +   +  L+ L    N  +  
Sbjct: 300 DLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358

Query: 332 LPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFT 391
           LP     LS     +L  L L+SN   G +      +    L         LYL NN FT
Sbjct: 359 LPESLTNLSA----SLLTLDLSSNNFSGPILPNLCQNPKNTLQ-------ELYLQNNGFT 407

Query: 392 GTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSF 451
           G +  ++   S+L  L ++ N L G I  + L +LS+L  L L  N L            
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNML------------ 454

Query: 452 ELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNH 511
                                                  +P     +   L  L L  N 
Sbjct: 455 ------------------------------------EGEIPQELMYV-KTLETLILDFND 477

Query: 512 FTGMLPD-------LSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSF 564
            TG +P        L+         I LS N   G IP        +        G L  
Sbjct: 478 LTGEIPSGLSNCTNLNW--------ISLSNNRLTGEIPK------WI--------GRLEN 515

Query: 565 LCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSL 624
           L          L LS+N  SG +P    + + L  L+L  N F+G IP +M       S 
Sbjct: 516 L--------AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM----FKQSG 563

Query: 625 HLRNNSFIGELPSSVKSFTQLTVLDLGHN--KISGIIPAWIGDSLPDLVVLSLRSNNFHG 682
            +  N   G+    +K+           N  +  GI    +   L      ++ S  + G
Sbjct: 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN-RLSTRNPCNITSRVYGG 622

Query: 683 RVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHAL 742
                  +   +  LD+S N +SG +P+ + ++  +                        
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLF----------------------- 659

Query: 743 LVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIG 801
                              ++L  N + G IP EV  L GL  L+LS N L G IP  + 
Sbjct: 660 ------------------ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701

Query: 802 GLTLLNSLDLSKNML 816
            LT+L  +DLS N L
Sbjct: 702 ALTMLTEIDLSNNNL 716

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  306 bits (787), Expect = 1e-92
 Identities = 164/616 (26%), Positives = 253/616 (41%), Gaps = 64/616 (10%)

Query: 103 LRGNISSSLI---GLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQ 159
           + G      +   G   L +L +  N   G  +   +    N+  LD+S+  F+  +P  
Sbjct: 163 ISGANVVGWVLSDGCGELKHLAISGNKISG-DVD--VSRCVNLEFLDVSSNNFSTGIP-F 218

Query: 160 LGNLTSLQYLDLSFNFDMLSKKL-EWLSQLSFLEYVRLNQVNL-GEATDWLQVVSQLPSL 217
           LG+ ++LQ+LD+S N   LS      +S  + L+ + ++     G           L SL
Sbjct: 219 LGDCSALQHLDISGN--KLSGDFSRAISTCTELKLLNISSNQFVGPIPP-----LPLKSL 271

Query: 218 TELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSS 277
             L L        I       S +  +L  LDLS N    +V  +  + S  L  L LSS
Sbjct: 272 QYLSLAENKFTGEIPDF---LSGACDTLTGLDLSGNHFYGAVPPFFGSCSL-LESLALSS 327

Query: 278 NKLQGPIPDSAFPNPTSLSYLDLSNNQLV-SVPKSFRNLC-RLRALYQDSNNLTDLLPNL 335
           N   G +P         L  LDLS N+    +P+S  NL   L  L   SNN +  +   
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP- 386

Query: 336 FLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLT 395
              L    ++TL+ L L +N   G +P     S+          L  L+L+ N  +GT+ 
Sbjct: 387 --NLCQNPKNTLQELYLQNNGFTGKIPP--TLSNCS-------ELVSLHLSFNYLSGTIP 435

Query: 396 KSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNI 455
            S+G LS+L  L +  N L+G I +  L  +  L  L L  N L     +G +PS     
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQ-ELMYVKTLETLILDFNDL-----TGEIPSG---- 485

Query: 456 IRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGM 515
             L  C         L        + +S   ++  +P W   L  NL  L LS+N F+G 
Sbjct: 486 --LSNCTN-------LNW------ISLSNNRLTGEIPKWIGRL-ENLAILKLSNNSFSGN 529

Query: 516 LPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSL-SFLCQISDEHFR 574
           +P       +    +DL+ N F G IP   +   S  +  N  +G    ++     +   
Sbjct: 530 IPAELGDCRSLI-WLDLNTNLFNGTIPA-AMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587

Query: 575 YLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGE 634
           +   +     G               N+ +  + G    + D N  M+ L +  N   G 
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 647

Query: 635 LPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRI 694
           +P  + S   L +L+LGHN ISG IP  +G  L  L +L L SN   GR+P  +  L  +
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVG-DLRGLNILDLSSNKLDGRIPQAMSALTML 706

Query: 695 QVLDLSQNNISGTVPQ 710
             +DLS NN+SG +P+
Sbjct: 707 TEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  248 bits (636), Expect = 3e-71
 Identities = 145/533 (27%), Positives = 218/533 (40%), Gaps = 57/533 (10%)

Query: 103 LRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQL-G 161
           L G+ S ++     L  LN+  N F G  IP     LK++++L L+   FTG +P  L G
Sbjct: 235 LSGDFSRAISTCTELKLLNISSNQFVG-PIPPLP--LKSLQYLSLAENKFTGEIPDFLSG 291

Query: 162 NLTSLQYLDLSFNFDMLSKKL-EWLSQLSFLEYVRLNQVNL-GEATDWLQVVSQLPSLTE 219
              +L  LDLS N       +  +    S LE + L+  N  GE       + ++  L  
Sbjct: 292 ACDTLTGLDLSGNH--FYGAVPPFFGSCSLLESLALSSNNFSGELPMD--TLLKMRGLKV 347

Query: 220 LQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSS-SSLVYLDLSSN 278
           L L        +     S +N S SL  LDLS N+ S  +   L  +  ++L  L L +N
Sbjct: 348 LDLSFNEFSGEL---PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404

Query: 279 KLQGPIPDSAFPNPTSLSYLDLSNNQLV-SVPKSFRNLCRLRALYQDSNNLTDLLPNLFL 337
              G IP +   N + L  L LS N L  ++P S  +L +LR L    N L   +P   +
Sbjct: 405 GFTGKIPPT-LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463

Query: 338 KLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKS 397
            +       LE L L+ N L G +P     S L         L+ + L+NNR TG + K 
Sbjct: 464 YVKT-----LETLILDFNDLTGEIP-----SGLSNC----TNLNWISLSNNRLTGEIPKW 509

Query: 398 IGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPS-FELNII 456
           IG+L  L +L +++NS  G I    L +   L +LDL+ N       +G +P+       
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLF-----NGTIPAAMFKQSG 563

Query: 457 RLGACKQGPQFPKWLQTQNKFSELDVS--AAEISDTVPNWFWDLSPNLYYLNLSHNHFTG 514
           ++ A     +   +++      E   +    E           LS      N++   + G
Sbjct: 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS-TRNPCNITSRVYGG 622

Query: 515 MLPDLSQKFTAYPPEIDLSANSFEGPIPP-----IPLTVTSLILFKNMFSG----SLSFL 565
                     +    +D+S N   G IP        L    L L  N  SG     +  L
Sbjct: 623 HTSPTFDNNGSMM-FLDMSYNMLSGYIPKEIGSMPYLF--ILNLGHNDISGSIPDEVGDL 679

Query: 566 CQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFN 618
             ++      LDLS N L G +P        LT ++L+NN  SG IP+   F 
Sbjct: 680 RGLN-----ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 727

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  116 bits (293), Expect = 6e-27
 Identities = 66/278 (23%), Positives = 119/278 (42%), Gaps = 20/278 (7%)

Query: 103 LRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGN 162
           L G I S L    +LN++++  N   G+ IP +IG L+N+  L LSN  F+G +P +LG+
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGE-IPKWIGRLENLAILKLSNNSFSGNIPAELGD 536

Query: 163 LTSLQYLDLSFNFDMLSKKL-EWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQ 221
             SL +LDL+ N  + +  +   + + S    +  N +  G+   +++            
Sbjct: 537 CRSLIWLDLNTN--LFNGTIPAAMFKQSGK--IAANFIA-GKRYVYIKNDGMKKEC-HGA 590

Query: 222 LRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQ 281
                   + +      S    +    +++             N+ S +++LD+S N L 
Sbjct: 591 GNLLEFQGIRSEQLNRLS----TRNPCNITSRVYGGHTSPTFDNNGS-MMFLDMSYNMLS 645

Query: 282 GPIPDSAFPNPTSLSYLDLSNNQLV-SVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLS 340
           G IP     +   L  L+L +N +  S+P    +L  L  L   SN L   +P     L+
Sbjct: 646 GYIPKE-IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704

Query: 341 NCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDN 378
                 L  + L++N L G +P++  F +       +N
Sbjct: 705 M-----LTEIDLSNNNLSGPIPEMGQFETFPPAKFLNN 737

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  251 bits (643), Expect = 4e-73
 Identities = 133/705 (18%), Positives = 238/705 (33%), Gaps = 119/705 (16%)

Query: 117 LNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFD 176
               +  +      Q+P  +    NI  L+L++              + L  LD+ FN  
Sbjct: 6   HEVADCSHLKL--TQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-T 60

Query: 177 MLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSV 236
           +   + E   +L  L+ + L    L + +D  +  +   +LTEL L   ++  +  +   
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSD--KTFAFCTNLTELHLMSNSIQKIKNNP-- 116

Query: 237 SFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDS-AFPNPTSL 295
            F     +L  LDLS N +S S          +L  L LS+NK+Q    +       +SL
Sbjct: 117 -FVKQK-NLITLDLSHNGLS-STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173

Query: 296 SYLDLSNNQLVSV-PKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNS 354
             L+LS+NQ+    P  F  + RL  L+ ++  L   L          +   +  L L++
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS--IRNLSLSN 231

Query: 355 NMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSL 414
           + L  +      F  LK  +L      +L L+ N        S   L QLE   +  N++
Sbjct: 232 SQLSTTSNTT--FLGLKWTNL-----TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284

Query: 415 KGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQ 474
           +  +    L  L  + YL+L  +                                     
Sbjct: 285 QH-LFSHSLHGLFNVRYLNLKRS------------------------------------- 306

Query: 475 NKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSA 534
             F++  +S A +       F  L   L +LN+  N   G+  ++          + LS 
Sbjct: 307 --FTKQSISLASLPKIDDFSFQWL-KCLEHLNMEDNDIPGIKSNMFTGLINLK-YLSLSN 362

Query: 535 NSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNW 594
           +                  F ++    L             L+L+ N +S    +     
Sbjct: 363 SFTSLRTLTN-------ETFVSLAHSPL-----------HILNLTKNKISKIESDAFSWL 404

Query: 595 QKLTVLNLANNKFSGKIPDSMDFNCMML-SLHLRNNSFIGELPSSVKSFTQLTVLDLGHN 653
             L VL+L  N+   ++          +  ++L  N ++    +S      L  L L   
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 464

Query: 654 KISGI-IPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCL 712
            +  +         L +L +L L +NN        +  L+++++LDL  NN++       
Sbjct: 465 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA------- 517

Query: 713 NNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGE 772
             L            ++                          L  +  ++L SN     
Sbjct: 518 -RLWKHANPGGPIYFLKG-------------------------LSHLHILNLESNGFDEI 551

Query: 773 IPEV-TSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
             EV   L  L  ++L  N+L     S       L SL+L KN++
Sbjct: 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  225 bits (576), Expect = 1e-63
 Identities = 128/632 (20%), Positives = 213/632 (33%), Gaps = 95/632 (15%)

Query: 216 SLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDL 275
           S          L  V         +   ++  L+L+ N +   +    F   S L  LD+
Sbjct: 5   SHEVADCSHLKLTQVP-------DDLPTNITVLNLTHNQLR-RLPAANFTRYSQLTSLDV 56

Query: 276 SSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVP-KSFRNLCRLRALYQDSNNLTDLLPN 334
             N +   +          L  L+L +N+L  +  K+F     L  L+  SN++  +  N
Sbjct: 57  GFNTISK-LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115

Query: 335 LFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTL 394
            F+K  N     L  L L+ N L  +         L+ L         L L+NN+     
Sbjct: 116 PFVKQKN-----LITLDLSHNGLSSTKLG--TQVQLENLQ-------ELLLSNNKIQALK 161

Query: 395 TK--SIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFE 452
           ++   I   S L+ L+++SN +K          + RL  L L++  L  +          
Sbjct: 162 SEELDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRLFGLFLNNVQLGPSL--------- 211

Query: 453 LNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLS-PNLYYLNLSHNH 511
                        +             L +S +++S T    F  L   NL  L+LS+N+
Sbjct: 212 ------------TEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 512 FTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPI--PLT-VTSLILFKNMFSGSLSF--LC 566
              +  D             L  N+ +         L  V  L L ++    S+S   L 
Sbjct: 260 LNVVGNDSFAWLP-QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318

Query: 567 QISDEHF------RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCM 620
           +I D  F       +L++ DN + G   N       L  L+L+N+  S +   +  F  +
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL 378

Query: 621 MLS----LHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLR 676
             S    L+L  N        +      L VLDLG N+I   +       L ++  + L 
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438

Query: 677 SNNFHGRVPVQVCHLQRIQVLDLSQNNISG--TVPQCLNNLTAMTA-NKSSNAMIRYPLR 733
            N +          +  +Q L L +  +    + P     L  +T  + S+N +      
Sbjct: 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI------ 492

Query: 734 TDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRL---------YGEIPEVTSLVGLIS 784
                          + +    L  ++ +DL  N L          G I  +  L  L  
Sbjct: 493 ------------ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540

Query: 785 LNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
           LNL  N            L  L  +DL  N L
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNL 572

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  216 bits (553), Expect = 2e-60
 Identities = 119/647 (18%), Positives = 211/647 (32%), Gaps = 113/647 (17%)

Query: 93  LNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGF 152
           LNL    +  L      +     +L  L++  N              KN+  LDLS+ G 
Sbjct: 78  LNL---QHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGL 133

Query: 153 TGRVPYQLGNLTSLQYLDLSFN-FDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVV 211
           +         L +LQ L LS N    L  +   +   S L+ + L+   + E +      
Sbjct: 134 SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP--GCF 191

Query: 212 SQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFN-SSSSL 270
             +  L  L L    L   +         ++ S+ +L LS + +S +          ++L
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANT-SIRNLSLSNSQLSTTSNTTFLGLKWTNL 250

Query: 271 VYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSV-PKSFRNLCRLRALYQDSN--- 326
             LDLS N L   + + +F     L Y  L  N +  +   S   L  +R L    +   
Sbjct: 251 TMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309

Query: 327 ------NLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDI-TLFSSLKELHLYDNM 379
                 +L  +    F  L       LE L +  N + G   ++ T   +LK L L ++ 
Sbjct: 310 QSISLASLPKIDDFSFQWLKC-----LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364

Query: 380 ------------------LDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEA 421
                             L +L L  N+ +   + +   L  LE+LD+  N +   +T  
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

Query: 422 HLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELD 481
               L  +  + LS+N  +    + +     L  + L               +     +D
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR--------------RVALKNVD 470

Query: 482 VSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPI 541
            S        P+ F  L  NL  L+LS+N+   +  D+ +        +DL  N+    +
Sbjct: 471 SS--------PSPFQPL-RNLTILDLSNNNIANINDDMLEGLEKLE-ILDLQHNNLAR-L 519

Query: 542 PPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLN 601
                    +   K +              H   L+L  N          K+  +L +++
Sbjct: 520 WKHANPGGPIYFLKGL-------------SHLHILNLESNGFDEIPVEVFKDLFELKIID 566

Query: 602 LANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPA 661
           L  N  +       +                        +   L  L+L  N I+ +   
Sbjct: 567 LGLNNLNTLPASVFN------------------------NQVSLKSLNLQKNLITSVEKK 602

Query: 662 WIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQR--IQVLDLSQNNISG 706
             G +  +L  L +R N F        C      +  ++ +  NI  
Sbjct: 603 VFGPAFRNLTELDMRFNPFDC-----TCESIAWFVNWINETHTNIPE 644

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  173 bits (440), Expect = 2e-45
 Identities = 95/556 (17%), Positives = 159/556 (28%), Gaps = 125/556 (22%)

Query: 293 TSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQL 352
            S    D S+ +L  VP        +  L    N L  L    F + S      L  L +
Sbjct: 4   VSHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQ-----LTSLDV 56

Query: 353 NSNMLRGSLPD-ITLFSSLKELHLYDN--------------MLDVLYLNNNRFTGTLTKS 397
             N +    P+       LK L+L  N               L  L+L +N         
Sbjct: 57  GFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP 116

Query: 398 IGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIR 457
             +   L  LD++ N L           L  L  L LS+N +          + +   + 
Sbjct: 117 FVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQ---------ALKSEELD 166

Query: 458 LGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLP 517
           + A                  +L++S+ +I +  P  F  +   L+ L L++      L 
Sbjct: 167 IFANSS-------------LKKLELSSNQIKEFSPGCFHAI-GRLFGLFLNNVQLGPSLT 212

Query: 518 DLSQKFTAYPP--EIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRY 575
           +      A      + LS +                  F  +   +L             
Sbjct: 213 EKLCLELANTSIRNLSLSNSQLSTTSNTT---------FLGLKWTNL-----------TM 252

Query: 576 LDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGEL 635
           LDLS N L+    +      +L    L  N        S+     +  L+L+ +     +
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312

Query: 636 ---------PSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPV 686
                      S +    L  L++  N I GI        L +L  LSL ++    R   
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT-GLINLKYLSLSNSFTSLRTLT 371

Query: 687 ----QVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHAL 742
                      + +L+L++N IS       + L  +                        
Sbjct: 372 NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE----------------------- 408

Query: 743 LVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP--EVTSLVGLISLNLSKNSLTGPIPSKI 800
                              +DL  N +  E+   E   L  +  + LS N       +  
Sbjct: 409 ------------------VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450

Query: 801 GGLTLLNSLDLSKNML 816
             +  L  L L +  L
Sbjct: 451 ALVPSLQRLMLRRVAL 466

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  167 bits (426), Expect = 9e-44
 Identities = 103/566 (18%), Positives = 194/566 (34%), Gaps = 82/566 (14%)

Query: 103 LRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAF-IGSLKNIRHLDLSNAGFTGRVPYQLG 161
           L      + + L++L  L +  N     +     I +  +++ L+LS+       P    
Sbjct: 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192

Query: 162 NLTSLQYLDLSFNF--DMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTE 219
            +  L  L L+       L++KL      + +  + L+   L   ++   +  +  +LT 
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252

Query: 220 LQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNK 279
           L L   NL  V   S   F+     L +  L  N++ +   +   +   ++ YL+L  + 
Sbjct: 253 LDLSYNNLNVVGNDS---FAWLP-QLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNLKRSF 307

Query: 280 LQGP--------IPDSAFPNPTSLSYLDLSNNQLVSV-PKSFRNLCRLRALYQDSN--NL 328
            +          I D +F     L +L++ +N +  +    F  L  L+ L   ++  +L
Sbjct: 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367

Query: 329 TDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPD-ITLFSSLKELHLYDNM-------- 379
             L    F+ L++     L IL L  N +     D  +    L+ L L  N         
Sbjct: 368 RTLTNETFVSLAHSP---LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

Query: 380 -------LDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAH-LSNLSRLTY 431
                  +  +YL+ N++      S   +  L+ L +   +LK + +       L  LT 
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484

Query: 432 LDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQ-TQNKFSELDVSAAEISDT 490
           LDLS+N++     +         + +L          + L    N  + L   A      
Sbjct: 485 LDLSNNNI-----ANINDDMLEGLEKL----------EILDLQHNNLARLWKHA--NPGG 527

Query: 491 VPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTS 550
              +   LS +L+ LNL  N F  +  ++ +        IDL  N+       +     S
Sbjct: 528 PIYFLKGLS-HLHILNLESNGFDEIPVEVFKDLFELK-IIDLGLNNLNTLPASVFNNQVS 585

Query: 551 LILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPN-CSKNWQKLTVLNLANNKFSG 609
           L                      + L+L  NL++          ++ LT L++  N F  
Sbjct: 586 L----------------------KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

Query: 610 KIPDSMDFNCMMLSLHLRNNSFIGEL 635
                  F   +   H          
Sbjct: 624 TCESIAWFVNWINETHTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  112 bits (282), Expect = 9e-26
 Identities = 72/444 (16%), Positives = 120/444 (27%), Gaps = 146/444 (32%)

Query: 380 LDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
            +V   ++ + T  +   +   + + +L++  N L+  +  A+ +  S+LT LD+  N+ 
Sbjct: 6   HEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNT- 60

Query: 440 ILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLS 499
                                                          IS   P     L 
Sbjct: 61  -----------------------------------------------ISKLEPELCQKL- 72

Query: 500 PNLYYLNLSHNHFTGMLPDLSQKFTAYPP---EIDLSANSFEGPIPPIPLTVTSLILFKN 556
           P L  LNL HN  + +                E+ L +NS +  I   P           
Sbjct: 73  PMLKVLNLQHNELSQLSDKTFAF----CTNLTELHLMSNSIQK-IKNNPF---------- 117

Query: 557 MFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMD 616
                   L          LDLS N LS          + L  L L+NNK      + +D
Sbjct: 118 ---VKQKNL--------ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD 166

Query: 617 FNCMM--LSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLS 674
                    L L +N      P    +  +L  L L + ++   +   +   L       
Sbjct: 167 IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL------- 219

Query: 675 LRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRT 734
                              I+ L LS + +S T       L                   
Sbjct: 220 ---------------ANTSIRNLSLSNSQLSTTSNTTFLGLKWTN--------------- 249

Query: 735 DYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEV-TSLVGLISLNLSKNSLT 793
                                   +  +DLS N L     +    L  L    L  N++ 
Sbjct: 250 ------------------------LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285

Query: 794 GPIPSKIGGLTLLNSLDLSKNMLM 817
                 + GL  +  L+L ++   
Sbjct: 286 HLFSHSLHGLFNVRYLNLKRSFTK 309

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  110 bits (278), Expect = 3e-25
 Identities = 59/304 (19%), Positives = 96/304 (31%), Gaps = 49/304 (16%)

Query: 93  LNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGF 152
           LNL   +   +    S +   L HL  L++  N+ G +        L+NI  + LS   +
Sbjct: 386 LNL---TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442

Query: 153 TGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVS 212
                     + SLQ L L                             L           
Sbjct: 443 LQLTRNSFALVPSLQRLMLRRV-------------------------ALKNVDSSPSPFQ 477

Query: 213 QLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLN-------DVSNSVYYWLFN 265
            L +LT L L   N+ ++              L  LDL  N         +     +   
Sbjct: 478 PLRNLTILDLSNNNIANINDD---MLEGLE-KLEILDLQHNNLARLWKHANPGGPIYFLK 533

Query: 266 SSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSV-PKSFRNLCRLRALYQD 324
             S L  L+L SN     IP   F +   L  +DL  N L ++    F N   L++L   
Sbjct: 534 GLSHLHILNLESNGFDE-IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ 592

Query: 325 SNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLY 384
            N +T +   +F          L  L +  N    +   I  F +     + +   ++  
Sbjct: 593 KNLITSVEKKVFGPAFR----NLTELDMRFNPFDCTCESIAWFVNW----INETHTNIPE 644

Query: 385 LNNN 388
           L+++
Sbjct: 645 LSSH 648

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  225 bits (575), Expect = 6e-64
 Identities = 105/778 (13%), Positives = 220/778 (28%), Gaps = 185/778 (23%)

Query: 47  QALLMFKQGLIDEYGHLSSWGNEDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGN 106
              L      I +Y  L    +  + K+    +G                          
Sbjct: 19  PIKLSRTAEYIKDYLALKEIWDALNGKNW-SQQGFGTQ---------------------- 55

Query: 107 ISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSL 166
                      N+   K  D  G Q    + S   +  L L   G +GRVP  +G LT L
Sbjct: 56  --------PGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTEL 107

Query: 167 QYLDLSFNFDMLSKKLEW---LSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLR 223
           + L L  + + ++++L     +S     E  +  +++  +             L +  + 
Sbjct: 108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCIN 167

Query: 224 GCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGP 283
                  I  SS      +     +    N+++  V   +   +  L    + ++     
Sbjct: 168 SDPQQKSIKKSS----RITLKDTQIGQLSNNIT-FVSKAVMRLTK-LRQFYMGNSPFVAE 221

Query: 284 IPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCS 343
                     +  Y      Q  +    + NL  L  +   +      LP     L    
Sbjct: 222 NICE-AWENENSEY----AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE-- 274

Query: 344 RDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFT-GTLTKSIGQLS 402
              ++++ +  N           + +L +  + +  + ++Y+  N      +  S+ ++ 
Sbjct: 275 ---MQLINVACNRGISGEQLKDDWQALADAPVGEK-IQIIYIGYNNLKTFPVETSLQKMK 330

Query: 403 QLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACK 462
           +L +L+   N L+G +      +  +L  L+L++N +                       
Sbjct: 331 KLGMLECLYNQLEGKLPA--FGSEIKLASLNLAYNQI----------------------- 365

Query: 463 QGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQK 522
                                       +P  F   +  +  L+ +HN    +      K
Sbjct: 366 --------------------------TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK 399

Query: 523 FTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNL 582
             +    ID S N                      F        +    +   ++LS+N 
Sbjct: 400 SVSVMSAIDFSYNEIGSVDG-------------KNFDPLDPTPFKGI--NVSSINLSNNQ 444

Query: 583 LSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSF 642
           +S            L+ +NL  N  +  IP +                 + +   + K+ 
Sbjct: 445 ISKFPKELFSTGSPLSSINLMGNMLTE-IPKNS----------------LKDENENFKNT 487

Query: 643 TQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVL----- 697
             LT +DL  NK++ +   +   +LP LV + L  N+F    P Q  +   ++       
Sbjct: 488 YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ 546

Query: 698 -DLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTL 756
            D   N      P+ +    ++T                                     
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLT------------------------------------- 569

Query: 757 GLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKN 814
                + + SN +  ++ E      +  L++  N       S +          L  +
Sbjct: 570 ----QLQIGSNDI-RKVNE-KITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  189 bits (481), Expect = 4e-51
 Identities = 81/634 (12%), Positives = 163/634 (25%), Gaps = 155/634 (24%)

Query: 88  GHVTMLNLQFRSYMPLRGNISSSLIGLQHLN-YLNMKYNDFGGKQIPAFIGSLKNIRHLD 146
                   + +  M  +             +   +   +D   K I            + 
Sbjct: 130 SANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIG 189

Query: 147 LSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATD 206
             +   T  V   +  LT L+   +  +           +     E          +  D
Sbjct: 190 QLSNNITF-VSKAVMRLTKLRQFYMGNS------PFVAENICEAWENENSEYAQQYKTED 242

Query: 207 WLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLN-------DVSNSV 259
                  L  LT++++  C   + + +           +  ++++ N          +  
Sbjct: 243 --LKWDNLKDLTDVEVYNCPNLTKLPTF---LKALP-EMQLINVACNRGISGEQLKDDWQ 296

Query: 260 YYWLFNSSSSLVYLDLSSNKLQ-GPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRL 318
                     +  + +  N L+  P+  S       L  L+   NQL     +F +  +L
Sbjct: 297 ALADAPVGEKIQIIYIGYNNLKTFPVETS-LQKMKKLGMLECLYNQLEGKLPAFGSEIKL 355

Query: 319 RALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDN 378
            +L    N +T++  N            +E L    N L+  +P+I    S+  +     
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQ-----VENLSFAHNKLK-YIPNIFDAKSVSVMS---- 405

Query: 379 MLDVLYLNNNRFTG-------TLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTY 431
               +  + N            L  +  +   +  +++++N +     E   S  S L+ 
Sbjct: 406 ---AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL-FSTGSPLSS 461

Query: 432 LDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTV 491
           ++L  N L                                      +E+           
Sbjct: 462 INLMGNML--------------------------------------TEIP---KNSLKDE 480

Query: 492 PNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSL 551
              F +    L  ++L  N  T +             +                      
Sbjct: 481 NENFKNT-YLLTSIDLRFNKLTKL-----------SDDFRA------------------- 509

Query: 552 ILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKI 611
                    +L +L          +DLS N  S   P    N   L    + N       
Sbjct: 510 --------TTLPYL--------VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ------ 546

Query: 612 PDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLV 671
                          + N  + E P  +     LT L +G N I  +         P++ 
Sbjct: 547 ------------RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK----ITPNIS 590

Query: 672 VLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNIS 705
           VL ++ N         VC      +  L  +   
Sbjct: 591 VLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  170 bits (433), Expect = 8e-45
 Identities = 74/573 (12%), Positives = 162/573 (28%), Gaps = 119/573 (20%)

Query: 264 FNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSF--RNLCRLRAL 321
            NS+  +  L L      G +PD+     T L  L L ++      + F  + +    + 
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDA-IGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 322 YQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLP-DITLFSSLKELHLYDNML 380
            Q                       L    +NS+  + S+     +     ++    N +
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 381 DVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEA-----HLSNLSRLTYLDLS 435
                        ++K++ +L++L    + ++              +     +    DL 
Sbjct: 196 -----------TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK 244

Query: 436 HNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWF 495
            ++L                                      ++++V        +P + 
Sbjct: 245 WDNL-----------------------------------KDLTDVEVYNCPNLTKLPTFL 269

Query: 496 WDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFK 555
             L P +  +N++ N                                 +     +L    
Sbjct: 270 KAL-PEMQLINVACNRGIS--------------------------GEQLKDDWQALADAP 302

Query: 556 NMFSGSLSFLCQISDEHFRYLDLSDN-LLSGELPNCSKNWQKLTVLNLANNKFSGKIPDS 614
                          E  + + +  N L +  +    +  +KL +L    N+  G    +
Sbjct: 303 VG-------------EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPA 348

Query: 615 MDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLS 674
                 + SL+L  N       +      Q+  L   HNK+  I   +   S+  +  + 
Sbjct: 349 FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAID 408

Query: 675 LRSNNFHG-------RVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTA-NKSSNA 726
              N            +         +  ++LS N IS    +  +  + +++ N   N 
Sbjct: 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM 468

Query: 727 MIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPE--VTSLVGLIS 784
           +   P  +    +                   + SIDL  N+L     +   T+L  L+ 
Sbjct: 469 LTEIPKNSLKDENENFKNTYL-----------LTSIDLRFNKLTKLSDDFRATTLPYLVG 517

Query: 785 LNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLM 817
           ++LS NS +   P++    + L    +      
Sbjct: 518 IDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDA 549

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  127 bits (320), Expect = 2e-30
 Identities = 47/372 (12%), Positives = 105/372 (28%), Gaps = 65/372 (17%)

Query: 461 CKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLS 520
              G Q    L +  + + L +     S  VP+    L+  L  L L  +          
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLT-ELEVLALGSHGEKVNERLFG 125

Query: 521 QK---FTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFL----CQISDEHF 573
            K         +       ++              L K+  +                  
Sbjct: 126 PKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185

Query: 574 RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIG 633
             +    N ++  +        KL    + N+ F  +            + +        
Sbjct: 186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEA-----WENENSEYAQQYK 239

Query: 634 ELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFH--------GRVP 685
                  +   LT +++ +      +P ++  +LP++ ++++  N            +  
Sbjct: 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQAL 298

Query: 686 VQVCHLQRIQVLDLSQNNI-SGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLV 744
                 ++IQ++ +  NN+ +  V   L  +  +                          
Sbjct: 299 ADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLG------------------------- 333

Query: 745 WKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLT 804
                            ++   N+L G++P   S + L SLNL+ N +T    +  G   
Sbjct: 334 ----------------MLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTE 377

Query: 805 LLNSLDLSKNML 816
            + +L  + N L
Sbjct: 378 QVENLSFAHNKL 389

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  115 bits (290), Expect = 9e-27
 Identities = 47/434 (10%), Positives = 126/434 (29%), Gaps = 109/434 (25%)

Query: 397 SIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNII 456
           S+    ++  L +      G + +A +  L+ L  L L  +   +N              
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDA-IGQLTELEVLALGSHGEKVN-------------- 120

Query: 457 RLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGML 516
                 +    PK +       +          T      D  P   + +L  +      
Sbjct: 121 ------ERLFGPKGISANMSDEQKQKMRMHYQKTFV----DYDPREDFSDLIKD------ 164

Query: 517 PDLSQKFTAYPPEIDLSANSFEGPIPP---IPLTVTSLILFKNMFSGSLSFLCQISDEHF 573
                          ++++  +  I     I L  T +    N  +     + +++    
Sbjct: 165 --------------CINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLT--KL 208

Query: 574 RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIG 633
           R   + ++    E        +     N    +         D    +  + + N   + 
Sbjct: 209 RQFYMGNSPFVAENIC-----EAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT 263

Query: 634 ELPSSVKSFTQLTVLDLGHNKISGI--------IPAWIGDSLPDLVVLSLRSNNF-HGRV 684
           +LP+ +K+  ++ ++++  N+              A        + ++ +  NN     V
Sbjct: 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAP-VGEKIQIIYIGYNNLKTFPV 322

Query: 685 PVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLV 744
              +  ++++ +L+   N + G +P    +   +                          
Sbjct: 323 ETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA------------------------- 356

Query: 745 WKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTS-LVGLISLNLSKNSLTG-PIPSKIGG 802
                           S++L+ N++             + +L+ + N L   P       
Sbjct: 357 ----------------SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKS 400

Query: 803 LTLLNSLDLSKNML 816
           +++++++D S N +
Sbjct: 401 VSVMSAIDFSYNEI 414

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 92.8 bits (231), Expect = 1e-19
 Identities = 40/252 (15%), Positives = 80/252 (31%), Gaps = 28/252 (11%)

Query: 107 ISSSLIGLQHLNYLNMKYNDFGG------KQIPAFIGSLKNIRHLDLSNAGFTGRVPYQL 160
                  +  ++ ++  YN+ G         +        N+  ++LSN   +       
Sbjct: 394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF 453

Query: 161 GNLTSLQYLDLSFN------FDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQL 214
              + L  ++L  N       + L  + E       L  + L    L + +D  +  + L
Sbjct: 454 STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA-TTL 512

Query: 215 PSLTELQLRGCNL---PSVIASSS--VSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSS 269
           P L  + L   +    P+   +SS    F   +      D   N         +    S 
Sbjct: 513 PYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRN----QRDAQGNRTLREWPEGITLCPS- 567

Query: 270 LVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVP-KSFRNLCRLRALYQDSNNL 328
           L  L + SN ++  + +   PN   +S LD+ +N  +S+                  +  
Sbjct: 568 LTQLQIGSNDIRK-VNEKITPN---ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

Query: 329 TDLLPNLFLKLS 340
            D+     L + 
Sbjct: 624 QDIRGCDALDIK 635

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 30/212 (14%), Positives = 54/212 (25%), Gaps = 45/212 (21%)

Query: 608 SGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSL 667
           +  I D +    +  +L+ +N S  G       ++     LD+      G  P    +S 
Sbjct: 26  AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDM-----WGAQPGVSLNSN 80

Query: 668 PDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAM 727
             +  LSL      GRVP  +  L  ++VL L  +       + L     ++AN S    
Sbjct: 81  GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKV--NERLFGPKGISANMSDE-- 136

Query: 728 IRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPE---VTSLVGLIS 784
                                                          +         LI 
Sbjct: 137 ---------------------------------QKQKMRMHYQKTFVDYDPREDFSDLIK 163

Query: 785 LNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
             ++ +     I            +    N +
Sbjct: 164 DCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  215 bits (549), Expect = 1e-60
 Identities = 112/610 (18%), Positives = 191/610 (31%), Gaps = 90/610 (14%)

Query: 215 PSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLD 274
            S   L L    L  + + S  SF      L  LDLS  ++        + S S L  L 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPE----LQVLDLSRCEIQTIEDG-AYQSLSHLSTLI 82

Query: 275 LSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSV-PKSFRNLCRLRALYQDSNNLTDL-L 332
           L+ N +Q  +   AF   +SL  L      L S+      +L  L+ L    N +    L
Sbjct: 83  LTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 333 PNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTG 392
           P  F  L+N     LE L L+SN ++           L ++ L +  LD   L+ N    
Sbjct: 142 PEYFSNLTN-----LEHLDLSSNKIQSIYCT--DLRVLHQMPLLNLSLD---LSLNPMNF 191

Query: 393 TLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFE 452
            +     +  +L  L + +N     + +  +  L+ L    L                  
Sbjct: 192 -IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 453 LNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHF 512
           L                    + + + LD    +I     + F  L  N+   +L     
Sbjct: 251 L-----------EGLCNLTIEEFRLAYLDYYLDDI----IDLFNCL-TNVSSFSLVSVTI 294

Query: 513 TGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEH 572
             +       +      ++L    F         ++  L    N    + S    +    
Sbjct: 295 ERVKDF---SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE---VDLPS 348

Query: 573 FRYLDLSDNLLS--GELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNS 630
             +LDLS N LS  G           L  L+L+ N     +  +      +  L  ++++
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSN 407

Query: 631 FIGELPSSV-KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV- 688
                  SV  S   L  LD+ H              L  L VL +  N+F       + 
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIF 466

Query: 689 CHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRK 748
             L+ +  LDLSQ  +    P   N+L+++                              
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSL------------------------------ 496

Query: 749 DSEYRNTLGLVKSIDLSSNRLYGEIPEV-TSLVGLISLNLSKNSLTGPIPSKIGGL-TLL 806
                      + +++S N  +         L  L  L+ S N +      ++    + L
Sbjct: 497 -----------QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 545

Query: 807 NSLDLSKNML 816
             L+L++N  
Sbjct: 546 AFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  212 bits (542), Expect = 1e-59
 Identities = 107/605 (17%), Positives = 195/605 (32%), Gaps = 88/605 (14%)

Query: 116 HLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNF 175
               L++ +N        +F  S   ++ LDLS             +L+ L  L L+ N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN- 86

Query: 176 DMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSS 235
                 ++ L+  +F                     S L SL +L     NL S+     
Sbjct: 87  -----PIQSLALGAF---------------------SGLSSLQKLVAVETNLASLENF-- 118

Query: 236 VSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSL 295
               +  ++L  L+++ N + +      F++ ++L +LDLSSNK+Q             +
Sbjct: 119 -PIGH-LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQM 175

Query: 296 SY----LDLSNNQLVSVPKSFRNLCRLRALYQDSNNLT-DLLPNLFLKLSNCSRDTLEIL 350
                 LDLS N +  +        RL  L   +N  + +++      L+      LE+ 
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAG-----LEVH 230

Query: 351 QLNSNMLRG----SLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLEL 406
           +L     R        D +    L  L + +  L       + +   +      L+ +  
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL----AYLDYYLDDIIDLFNCLTNVSS 286

Query: 407 LDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQ 466
             + S +++ +   ++      L  ++                   L  +   + K G  
Sbjct: 287 FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS------LKRLTFTSNKGGNA 340

Query: 467 FPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAY 526
           F +      +F +L  +            +    +L YL+LS N        +S  F   
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-TSLKYLDLSFNGVIT----MSSNFLGL 395

Query: 527 PP--EIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLS 584
                +D   ++ +                      SL  L         YLD+S     
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVF-------------LSLRNL--------IYLDISHTHTR 434

Query: 585 GELPNCSKNWQKLTVLNLANNKFSGKI-PDSMDFNCMMLSLHLRNNSFIGELPSSVKSFT 643
                       L VL +A N F     PD       +  L L         P++  S +
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 644 QLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQR-IQVLDLSQN 702
            L VL++ HN    +        L  L VL    N+       ++ H    +  L+L+QN
Sbjct: 495 SLQVLNMSHNNFFSLDTFPYKC-LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

Query: 703 NISGT 707
           + + T
Sbjct: 554 DFACT 558

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  210 bits (536), Expect = 9e-59
 Identities = 111/646 (17%), Positives = 188/646 (29%), Gaps = 101/646 (15%)

Query: 89  HVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLS 148
               L+L   S+ PLR   S S      L  L++   +           SL ++  L L+
Sbjct: 29  STKNLDL---SFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILT 84

Query: 149 NAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWL 208
                         L+SLQ L       + S +   +  L  L+ + +   NL ++    
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAH-NLIQSFKLP 142

Query: 209 QVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSS 268
           +  S L +L  L L    + S+  +              LDLSLN ++            
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEI 200

Query: 269 SLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-------SFRNLCRLRAL 321
            L  L L +N     +  +       L    L   +  +          +   LC L   
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 322 YQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNML- 380
                 L   L ++    +  +   +    L S  +   + D +     + L L +    
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTN--VSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFG 317

Query: 381 --------DVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGM-ITEAHLSNLSRLTY 431
                    +  L      G    S   L  LE LD++ N L             + L Y
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 432 LDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTV 491
           LDLS N +I    S ++   +L  +                              +    
Sbjct: 378 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN------------------------LKQMS 412

Query: 492 PNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSL 551
               +    NL YL++SH H       +    ++    + ++ NSF+    P        
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE-VLKMAGNSFQENFLP-------- 463

Query: 552 ILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKI 611
                      + L  +      +LDLS   L    P    +   L VLN+++N F    
Sbjct: 464 --------DIFTELRNL-----TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 510

Query: 612 PDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLV 671
                                       K    L VLD   N I       +      L 
Sbjct: 511 TFPY------------------------KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 546

Query: 672 VLSLRSNNFHGRVPVQ--VCHLQRIQVLDLSQNNISGTVPQCLNNL 715
            L+L  N+F      Q  +  ++  + L +    +    P     +
Sbjct: 547 FLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM 592

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  202 bits (517), Expect = 3e-56
 Identities = 124/699 (17%), Positives = 224/699 (32%), Gaps = 136/699 (19%)

Query: 131 QIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSF 190
           +IP  +    + ++LDLS         Y   +   LQ LDLS   ++ + +      LS 
Sbjct: 21  KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSH 77

Query: 191 LEYVRLNQVNL-GEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLD 249
           L  + L    +   A       S L SL +L     NL S+         +  ++L  L+
Sbjct: 78  LSTLILTGNPIQSLALGAF---SGLSSLQKLVAVETNLASLENFP---IGHL-KTLKELN 130

Query: 250 LSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSY----LDLSNNQL 305
           ++ N + +      F++ ++L +LDLSSNK+Q             +      LDLS N +
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLSLNPM 189

Query: 306 VSVPKSFRNLCRLRALYQDSNNLT-DLLPNLFLKLSNCSRDTLEILQLNSNMLRG----S 360
             +        RL  L   +N  + +++      L+      LE+ +L     R      
Sbjct: 190 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAG-----LEVHRLVLGEFRNEGNLE 244

Query: 361 LPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITE 420
             D +    L  L + +  L       + +   +      L+ +    + S +++ +   
Sbjct: 245 KFDKSALEGLCNLTIEEFRL----AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK-- 298

Query: 421 AHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSEL 480
              S      +L+L +         G  P+ +L                          L
Sbjct: 299 -DFSYNFGWQHLELVNCKF------GQFPTLKLK---------------------SLKRL 330

Query: 481 DVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPP--EIDLSANSFE 538
             +             DL P+L +L+LS N  +      SQ          +DLS N   
Sbjct: 331 TFT--SNKGGNAFSEVDL-PSLEFLDLSRNGLS-FKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 539 GPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELP-NCSKNWQKL 597
             +    L +  L                       +LD   + L      +   + + L
Sbjct: 387 T-MSSNFLGLEQL----------------------EHLDFQHSNLKQMSEFSVFLSLRNL 423

Query: 598 TVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSV-KSFTQLTVLDLGHNKIS 656
             L++++           +    +  L +  NSF       +      LT LDL   ++ 
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 657 GIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLT 716
            + P     SL  L VL++  NNF          L  +QVLD S N+I  +  Q L +  
Sbjct: 484 QLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF- 541

Query: 717 AMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPE- 775
                                                     +  ++L+ N         
Sbjct: 542 ---------------------------------------PSSLAFLNLTQNDFACTCEHQ 562

Query: 776 --VTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLS 812
             +  +     L +    +    PS   G+ +L SL+++
Sbjct: 563 SFLQWIKDQRQLLVEVERMECATPSDKQGMPVL-SLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  193 bits (493), Expect = 6e-53
 Identities = 121/591 (20%), Positives = 196/591 (33%), Gaps = 97/591 (16%)

Query: 239 SNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYL 298
            N   S  +LDLS N +   +  + F S   L  LDLS  ++Q  I D A+ + + LS L
Sbjct: 24  DNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTL 81

Query: 299 DLSNNQLVSV-PKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNML 357
            L+ N + S+   +F  L  L+ L     NL  L       L       L+ L +  N++
Sbjct: 82  ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT-----LKELNVAHNLI 136

Query: 358 RGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLEL----LDVASNS 413
           + S      FS+L  L         L L++N+        +  L Q+ L    LD++ N 
Sbjct: 137 Q-SFKLPEYFSNLTNLE-------HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 414 LKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFE-LNIIRLGACKQGPQFPKWLQ 472
           +  +   A      RL  L L +N   LN     +     L + RL   +   +      
Sbjct: 189 MNFIQPGA--FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 473 TQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYP--PEI 530
            ++    L                    NL        +    L D+   F         
Sbjct: 247 DKSALEGL-------------------CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287

Query: 531 DLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNC 590
            L + + E                        S+         ++L+L +          
Sbjct: 288 SLVSVTIERVKD-------------------FSYNFGW-----QHLELVNCKFGQFPTLK 323

Query: 591 SKNWQKLTVLNLANNKFSGKIPDSMDFNCMML-SLHLRNN--SFIGELPSSVKSFTQLTV 647
            K+ ++LT  +        ++      +   L  L L  N  SF G    S    T L  
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEV------DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 648 LDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV-CHLQRIQVLDLSQNNISG 706
           LDL  N +  +   ++G  L  L  L  + +N        V   L+ +  LD+S  +   
Sbjct: 378 LDLSFNGVITMSSNFLG--LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 707 TVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSS 766
                 N L+++   K +    +     D + +                L  +  +DLS 
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE----------------LRNLTFLDLSQ 479

Query: 767 NRLYGEIPEV-TSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
            +L    P    SL  L  LN+S N+           L  L  LD S N +
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  166 bits (422), Expect = 2e-43
 Identities = 104/548 (18%), Positives = 160/548 (29%), Gaps = 108/548 (19%)

Query: 274 DLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSV-PKSFRNLCRLRALYQDSNNLTDLL 332
                     IPD+    P S   LDLS N L  +   SF +   L+ L      +  + 
Sbjct: 13  QCMELNFYK-IPDN---LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 333 PNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTG 392
              +  LS+     L  L L  N ++        FS L  L         L         
Sbjct: 69  DGAYQSLSH-----LSTLILTGNPIQSLALG--AFSGLSSLQ-------KLVAVETNLAS 114

Query: 393 TLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFE 452
                IG L  L+ L+VA N ++      + SNL+ L +LDLS N +          +  
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-----QSIYCT-- 167

Query: 453 LNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHF 512
                              Q       LD+S   ++   P  F ++   L+ L L +N  
Sbjct: 168 -------------DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI--RLHKLTLRNNFD 212

Query: 513 TGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEH 572
           +  +     +  A      L    F                       +L  LC ++ E 
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD-----------KSALEGLCNLTIEE 261

Query: 573 FRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFI 632
           FR   L  +    ++ +       ++  +L +         S  +N     L L N  F 
Sbjct: 262 FRLAYL--DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKF- 316

Query: 633 GELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSN--NFHGRVPVQVCH 690
           G+ P+       L  L    NK            LP L  L L  N  +F G        
Sbjct: 317 GQFPTL--KLKSLKRLTFTSNKGGNAFSEV---DLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 691 LQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDS 750
              ++ LDLS N +       L                                      
Sbjct: 372 TTSLKYLDLSFNGVITMSSNFLG------------------------------------- 394

Query: 751 EYRNTLGLVKSIDLSSNRLYGEIPEVT--SLVGLISLNLSKNSLTGPIPSKIGGLTLLNS 808
                L  ++ +D   + L          SL  LI L++S             GL+ L  
Sbjct: 395 -----LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449

Query: 809 LDLSKNML 816
           L ++ N  
Sbjct: 450 LKMAGNSF 457

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.4 bits (178), Expect = 3e-13
 Identities = 37/203 (18%), Positives = 55/203 (27%), Gaps = 54/203 (26%)

Query: 617 FNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLR 676
           + CM L+           LP S         LDL  N +  +       S P+L VL L 
Sbjct: 12  YQCMELNF----YKIPDNLPFS------TKNLDLSFNPLRHLGSYSFF-SFPELQVLDLS 60

Query: 677 SNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDY 736
                         L  +  L L+ N I        + L+++                  
Sbjct: 61  RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL------------------ 102

Query: 737 YNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEV-TSLVGLISLNLSKNSLTG- 794
                                  + +      L          L  L  LN++ N +   
Sbjct: 103 -----------------------QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 795 PIPSKIGGLTLLNSLDLSKNMLM 817
            +P     LT L  LDLS N + 
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQ 162

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.8 bits (148), Expect = 1e-09
 Identities = 24/172 (13%), Positives = 42/172 (24%), Gaps = 46/172 (26%)

Query: 646 TVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNIS 705
                       I      +       L L  N               +QVLDLS+  I 
Sbjct: 10  ITYQCMELNFYKIPD----NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 706 GTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLS 765
                   +L+ +                                          ++ L+
Sbjct: 66  TIEDGAYQSLSHL-----------------------------------------STLILT 84

Query: 766 SNRLYGEIPEV-TSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
            N +        + L  L  L   + +L       IG L  L  L+++ N++
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  210 bits (536), Expect = 2e-57
 Identities = 98/676 (14%), Positives = 195/676 (28%), Gaps = 121/676 (17%)

Query: 52  FKQGLIDEYGHLSSWGNEDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSL 111
           +  G I+   H  +W    +        GV   N  G VT L+L   +    +G +  ++
Sbjct: 288 YYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSL---AGFGAKGRVPDAI 343

Query: 112 IGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDL 171
             L  L  L+   +             L      +  +          L     L   DL
Sbjct: 344 GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL 403

Query: 172 SFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWL-QVVSQLPSLTELQLRGCNLPSV 230
             +    + +++ + + S +        NL     ++ + + +L  L  +          
Sbjct: 404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYD 463

Query: 231 IASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFP 290
             +               +        +     +++   L  ++L +      +PD    
Sbjct: 464 NIAVD---------WEDANSDYAKQYENEE-LSWSNLKDLTDVELYNCPNMTQLPDF-LY 512

Query: 291 NPTSLSYLDLSNNQLVSV----------PKSFRNLCRLRALYQDSNNLTDLLPNLFL-KL 339
           +   L  L+++ N+ +S                   +++  Y   NNL +   +  L K+
Sbjct: 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKM 572

Query: 340 SNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIG 399
                  L +L    N +R  L        L +L L  N ++            + +   
Sbjct: 573 VK-----LGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-----------EIPEDFC 615

Query: 400 Q-LSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRL 458
               Q+E L  + N LK +    +  ++  +  +D S+N +     +      +   I  
Sbjct: 616 AFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675

Query: 459 GACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPD 518
                              S + +S  EI       F   S  +  + LS+N  T     
Sbjct: 676 -------------------STVTLSYNEIQKFPTELFATGS-PISTIILSNNLMT----- 710

Query: 519 LSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDL 578
                        +  NS +                      +   L          +DL
Sbjct: 711 ------------SIPENSLKPKDGNY---------------KNTYLL--------TTIDL 735

Query: 579 SDNLLSGELPN--CSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLS-------LHLRNN 629
             N L+  L +   +     L+ ++++ N FS   P     N   L             N
Sbjct: 736 RFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQP-LNSSQLKAFGIRHQRDAEGN 792

Query: 630 SFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVC 689
             + + P+ + +   L  L +G N I  +         P L +L +  N         VC
Sbjct: 793 RILRQWPTGITTCPSLIQLQIGSNDIRKVDE----KLTPQLYILDIADNPNISIDVTSVC 848

Query: 690 HLQRIQVLDLSQNNIS 705
                 +  L  +   
Sbjct: 849 PYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  209 bits (533), Expect = 7e-57
 Identities = 94/699 (13%), Positives = 197/699 (28%), Gaps = 152/699 (21%)

Query: 129 GKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQL 188
           G Q    + +   +  L L+  G  GRVP  +G LT L+ L    +    +         
Sbjct: 312 GDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH--SETVSGRLFGDE 369

Query: 189 SFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHL 248
                +   + +          +     L    L    +      +        +  + +
Sbjct: 370 ELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAI------NRNPEMKPIKKDSRI 423

Query: 249 DLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSV 308
            L                      +   +N++   I  +     T L  +  +N+     
Sbjct: 424 SLKDT------------------QIGNLTNRITF-ISKA-IQRLTKLQIIYFANSPFTYD 463

Query: 309 PKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPD-ITLF 367
             +            D     +     +  L +     L  ++L +      LPD +   
Sbjct: 464 NIAVD----WEDANSDYAKQYENEELSWSNLKD-----LTDVELYNCPNMTQLPDFLYDL 514

Query: 368 SSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLS 427
             L+ L++  N           +T  L        ++++  +  N+L+     A L  + 
Sbjct: 515 PELQSLNIACNRGISAAQLKADWT-RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMV 573

Query: 428 RLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEI 487
           +L  LD  HN +        + +F  N+                    K ++L +   +I
Sbjct: 574 KLGLLDCVHNKVRH------LEAFGTNV--------------------KLTDLKLDYNQI 607

Query: 488 SDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLT 547
              +P  F   +  +  L  SHN    +    + K       +D S N        I  +
Sbjct: 608 E-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666

Query: 548 VTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKF 607
           +                       +   + LS N +             ++ + L+NN  
Sbjct: 667 MDDYKGI-----------------NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709

Query: 608 SGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSL 667
           +  IP++                 +     + K+   LT +DL  NK++ +   +   +L
Sbjct: 710 T-SIPENS----------------LKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTL 752

Query: 668 PDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQ------NNISGTVPQCLNNLTAMTAN 721
           P L  + +  N F    P Q  +  +++   +        N I    P  +    ++   
Sbjct: 753 PYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL--- 808

Query: 722 KSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVG 781
                                                   + + SN +  ++ E      
Sbjct: 809 --------------------------------------IQLQIGSNDI-RKVDE-KLTPQ 828

Query: 782 LISLNLSKNSLT-GPIPSKIGGLTL-LNSLDLSKNMLMR 818
           L  L+++ N      + S    +   +  L   K   +R
Sbjct: 829 LYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIR 867

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  116 bits (292), Expect = 7e-27
 Identities = 50/374 (13%), Positives = 103/374 (27%), Gaps = 69/374 (18%)

Query: 461 CKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLS 520
              G Q    L    + + L ++       VP+    L+  L  L+   +  T     L 
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLT-ELKVLSFGTHSETV-SGRLF 366

Query: 521 QKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISD-EHFRYLDLS 579
                 P   +   +        + L     +   ++   +++   ++   +    + L 
Sbjct: 367 GDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLK 426

Query: 580 DNLLSG------ELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIG 633
           D  +         +    +   KL ++  AN+ F+                +        
Sbjct: 427 DTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVD-----WEDANSDYAKQYE 481

Query: 634 ELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHG---------RV 684
               S  +   LT ++L +      +P ++ D LP+L  L++  N             R+
Sbjct: 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRL 540

Query: 685 PVQVCHLQRIQVLDLSQNNISG-TVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALL 743
                   +IQ+  +  NN+        L  +  +                         
Sbjct: 541 ADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLG------------------------ 576

Query: 744 VWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIG-G 802
                             +D   N++   +    + V L  L L  N +   IP      
Sbjct: 577 -----------------LLDCVHNKV-RHLEAFGTNVKLTDLKLDYNQIEE-IPEDFCAF 617

Query: 803 LTLLNSLDLSKNML 816
              +  L  S N L
Sbjct: 618 TDQVEGLGFSHNKL 631

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.9 bits (119), Expect = 3e-06
 Identities = 22/212 (10%), Positives = 58/212 (27%), Gaps = 36/212 (16%)

Query: 605 NKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIG 664
            + +  I D      +  +L  +N  +     ++          +   +         + 
Sbjct: 262 KETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWN-FNKELDMWGDQPGVDL- 319

Query: 665 DSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSS 724
           D+   +  LSL      GRVP  +  L  ++VL    ++ + +     +       ++  
Sbjct: 320 DNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379

Query: 725 NAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLIS 784
                                                I +   +++ +  +  +L  L+ 
Sbjct: 380 K----------------------------------HRIRMHYKKMFLDYDQRLNLSDLLQ 405

Query: 785 LNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
             +++N    PI            +    N +
Sbjct: 406 DAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  196 bits (500), Expect = 6e-54
 Identities = 113/610 (18%), Positives = 208/610 (34%), Gaps = 93/610 (15%)

Query: 214 LPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYL 273
             S   L+     LP++  ++   FS    +L  LDL+   +   ++   F S   L  L
Sbjct: 32  PNSTECLEFSFNVLPTIQNTT---FSRLI-NLTFLDLTRCQIY-WIHEDTFQSQHRLDTL 86

Query: 274 DLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSV-PKSFRNLCRLRALYQDSNNLTDLL 332
            L++N L   + ++A   P +L +L      + S+      N   L +LY  SN+++ + 
Sbjct: 87  VLTANPLIF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK 145

Query: 333 PNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTG 392
                         L++L   +N +     +    SSL++          L LN N    
Sbjct: 146 LPKGFPTEK-----LKVLDFQNNAIHYLSKE--DMSSLQQATNLS-----LNLNGNDIA- 192

Query: 393 TLTKSIGQLSQLELLDVASNSLKGMITEA-HLSNLSRLTYLDLSHNSLILNFGSGWVPSF 451
            +       +  + L+        +I +    S +  L               + +    
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252

Query: 452 ELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNH 511
           E+++                        +++      +   N F   S  L  L+L+  H
Sbjct: 253 EMSVE----------------------SINLQKHYFFNISSNTFHCFS-GLQELDLTATH 289

Query: 512 FTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDE 571
            + +   L    T    ++ LSAN FE                    S     L      
Sbjct: 290 LSELPSGLVGLSTLK--KLVLSANKFENLCQ-------------ISASN-FPSL------ 327

Query: 572 HFRYLDLSDNLLSGEL-PNCSKNWQKLTVLNLANNKFSGKIPDSMDF-NCMML-SLHLRN 628
              +L +  N    EL   C +N + L  L+L+++        ++   N   L SL+L  
Sbjct: 328 --THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385

Query: 629 NSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV 688
           N  +     + K   QL +LDL   ++          +L  L VL+L  +          
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445

Query: 689 CHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANK----SSNAMIRYPLRTDYYNDHALLV 744
             L  +Q L+L  N+      Q  N+L  +   +    S    +    +  + +   +  
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFTSLKMM-- 502

Query: 745 WKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLT 804
                            +DLS NRL     E  S +  I LNL+ N ++  +PS +  L+
Sbjct: 503 ---------------NHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILS 547

Query: 805 LLNSLDLSKN 814
              +++L +N
Sbjct: 548 QQRTINLRQN 557

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  192 bits (489), Expect = 2e-52
 Identities = 101/614 (16%), Positives = 191/614 (31%), Gaps = 107/614 (17%)

Query: 116 HLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNF 175
               L   +N     Q   F   L N+  LDL+             +   L  L L+ N 
Sbjct: 34  STECLEFSFNVLPTIQNTTF-SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN- 91

Query: 176 DMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSS 235
                 L ++++ +                      S   +L  L      + S+     
Sbjct: 92  -----PLIFMAETAL---------------------SGPKALKHLFFIQTGISSIDFIP- 124

Query: 236 VSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSL 295
               N   +L  L L  N +S S+       +  L  LD  +N +   +      +    
Sbjct: 125 --LHNQK-TLESLYLGSNHIS-SIKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQA 179

Query: 296 S--YLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLN 353
           +   L+L+ N +  +     +    ++L         ++       +  S        ++
Sbjct: 180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD 239

Query: 354 SNMLRGSLPDITLFSSLKELHLYDN--------------MLDVLYLNNNRFTGTLTKSIG 399
              +  ++ +     S++ ++L  +               L  L L     +  L   + 
Sbjct: 240 DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV 298

Query: 400 QLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFE-LNIIRL 458
            LS L+ L +++N  + +   +  SN   LT+L +  N+  L  G+G + + E L  + L
Sbjct: 299 GLSTLKKLVLSANKFENLCQIS-ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357

Query: 459 GACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPD 518
                           +     D               +L  +L  LNLS+N    +  +
Sbjct: 358 S--------------HDDIETSDCC--------NLQLRNL-SHLQSLNLSYNEPLSLKTE 394

Query: 519 LSQKFTAYPP--EIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYL 576
               F   P    +DL+    +      P               +L  L        + L
Sbjct: 395 A---FKECPQLELLDLAFTRLKVKDAQSPF-------------QNLHLL--------KVL 430

Query: 577 DLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDF--NCMML-SLHLRNNSFIG 633
           +LS +LL             L  LNL  N F        +       L  L L       
Sbjct: 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490

Query: 634 ELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQR 693
               +  S   +  +DL HN+++      +       + L+L SN+    +P  +  L +
Sbjct: 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL--KGIYLNLASNHISIILPSLLPILSQ 548

Query: 694 IQVLDLSQNNISGT 707
            + ++L QN +  T
Sbjct: 549 QRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  179 bits (456), Expect = 5e-48
 Identities = 102/565 (18%), Positives = 192/565 (33%), Gaps = 97/565 (17%)

Query: 267 SSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSV-PKSFRNLCRLRALYQDS 325
            +S   L+ S N L   I ++ F    +L++LDL+  Q+  +   +F++  RL  L   +
Sbjct: 32  PNSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 326 NNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYL 385
           N L  +               L+ L      +           + K L         LYL
Sbjct: 91  NPLIFMAETALSGPKA-----LKHLFFIQTGISSIDFI--PLHNQKTLE-------SLYL 136

Query: 386 NNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLT--YLDLSHNSLILNF 443
            +N  +           +L++LD  +N++   +++  +S+L + T   L+L+ N  I   
Sbjct: 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNGND-IAGI 194

Query: 444 GSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFS--ELDVSAAEISDTVPNWFWDLSP- 500
             G   S     +  G  +      K L+     S         +  D  P  F  L   
Sbjct: 195 EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM 254

Query: 501 NLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSG 560
           ++  +NL  ++F  +  +    F+    E+DL+A      +P   + +++L         
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQ-ELDLTATHLSE-LPSGLVGLSTL--------- 303

Query: 561 SLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCM 620
                        + L LS N         + N+  LT L++  N    ++      N  
Sbjct: 304 -------------KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350

Query: 621 ML-SLHLRNN--SFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRS 677
            L  L L ++           +++ + L  L+L +N+   +         P L +L L  
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-ECPQLELLDLAF 409

Query: 678 NNFHGRVPVQV-CHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDY 736
                +       +L  ++VL+LS + +  +  Q  + L A+                  
Sbjct: 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL------------------ 451

Query: 737 YNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTS----LVGLISLNLSKNSL 792
                                  + ++L  N       + T+    L  L  L LS   L
Sbjct: 452 -----------------------QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488

Query: 793 TGPIPSKIGGLTLLNSLDLSKNMLM 817
           +         L ++N +DLS N L 
Sbjct: 489 SSIDQHAFTSLKMMNHVDLSHNRLT 513

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  172 bits (439), Expect = 9e-46
 Identities = 94/557 (16%), Positives = 171/557 (30%), Gaps = 114/557 (20%)

Query: 103 LRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGN 162
           +       L   + L  L +  N     ++P      + ++ LD  N          + +
Sbjct: 117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP-TEKLKVLDFQNNAIHYLSKEDMSS 175

Query: 163 LTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQL 222
           L     L L+ N + ++         +  + +                 S + SL     
Sbjct: 176 LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTF 235

Query: 223 RGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQG 282
              +   +  +          S+  ++L  +    ++    F+  S L  LDL++  L  
Sbjct: 236 EDMDDEDISPAVFEGLCEM--SVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLSE 292

Query: 283 PIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRALYQDSNNL-TDLLPNLFLKLS 340
            +P       ++L  L LS N+  ++ + S  N   L  L    N    +L       L 
Sbjct: 293 -LPS-GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350

Query: 341 NCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQ 400
           N     L  L L+ + +  S        +L  L         L L+ N      T++  +
Sbjct: 351 N-----LRELDLSHDDIETSDCCNLQLRNLSHLQ-------SLNLSYNEPLSLKTEAFKE 398

Query: 401 LSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGA 460
             QLELLD+A   LK    ++   NL  L  L+LSH+ L                     
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL--------------------- 437

Query: 461 CKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLS 520
                                       D      +D  P L +LNL  NHF        
Sbjct: 438 ----------------------------DISSEQLFDGLPALQHLNLQGNHFPKG----- 464

Query: 521 QKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSD 580
                         NS +         +  L                        L LS 
Sbjct: 465 ---------NIQKTNSLQT--------LGRL----------------------EILVLSF 485

Query: 581 NLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVK 640
             LS    +   + + +  ++L++N+ +    +++  +   + L+L +N     LPS + 
Sbjct: 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS-HLKGIYLNLASNHISIILPSLLP 544

Query: 641 SFTQLTVLDLGHNKISG 657
             +Q   ++L  N +  
Sbjct: 545 ILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  161 bits (409), Expect = 8e-42
 Identities = 88/551 (15%), Positives = 151/551 (27%), Gaps = 113/551 (20%)

Query: 273 LDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRALYQDSNNLTDL 331
            +  +  L   IP +    P S   L+ S N L ++   +F  L  L  L      +  +
Sbjct: 17  YNCENLGLNE-IPGT---LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 332 LPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFT 391
             + F          L+ L L +N L          S  K L         L+      +
Sbjct: 73  HEDTFQSQHR-----LDTLVLTANPLIFMAET--ALSGPKALK-------HLFFIQTGIS 118

Query: 392 GTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSF 451
                 +     LE L + SN +  +          +L  LD  +N++            
Sbjct: 119 SIDFIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177

Query: 452 ELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNH 511
           +   +                       L+++  +I+   P  F   S     LN     
Sbjct: 178 QATNL----------------------SLNLNGNDIAGIEPGAF--DSAVFQSLNFGGTQ 213

Query: 512 FTGM-LPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISD 570
              +    L                  E   P +   +  +                   
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM------------------- 254

Query: 571 EHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMML-SLHLRNN 629
                ++L  +       N    +  L  L+L     S ++P  +      L  L L  N
Sbjct: 255 -SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSAN 311

Query: 630 SFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFH--GRVPVQ 687
            F      S  +F  LT L +  N     +     ++L +L  L L  ++        +Q
Sbjct: 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371

Query: 688 VCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKR 747
           + +L  +Q L+LS N       +       +                             
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE---------------------------- 403

Query: 748 KDSEYRNTLGLVKSIDLSSNRLYGEIPEV--TSLVGLISLNLSKNSLTGPIPSKIGGLTL 805
                         +DL+  RL  +  +    +L  L  LNLS + L         GL  
Sbjct: 404 -------------LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450

Query: 806 LNSLDLSKNML 816
           L  L+L  N  
Sbjct: 451 LQHLNLQGNHF 461

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  145 bits (367), Expect = 2e-36
 Identities = 68/352 (19%), Positives = 117/352 (33%), Gaps = 29/352 (8%)

Query: 89  HVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLS 148
            V  +NL            S++      L  L++        ++P+ +  L  ++ L LS
Sbjct: 255 SVESINL---QKHYFFNISSNTFHCFSGLQELDLTATHL--SELPSGLVGLSTLKKLVLS 309

Query: 149 NAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWL 208
              F         N  SL +L +  N   L      L  L  L  + L+  ++  +    
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369

Query: 209 QVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSS 268
             +  L  L  L L      S+      +F      L  LDL+   +        F +  
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTE---AFKECP-QLELLDLAFTRLKVKDAQSPFQNLH 425

Query: 269 SLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSV----PKSFRNLCRLRALYQD 324
            L  L+LS + L     +  F    +L +L+L  N           S + L RL  L   
Sbjct: 426 LLKVLNLSHSLLDI-SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484

Query: 325 SNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLY 384
             +L+ +  + F  L       +  + L+ N L  S  +    S LK +         L 
Sbjct: 485 FCDLSSIDQHAFTSLKM-----MNHVDLSHNRLTSSSIEA--LSHLKGI--------YLN 529

Query: 385 LNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSH 436
           L +N  +  L   +  LSQ   +++  N L    +  +     +     L  
Sbjct: 530 LASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLED 581

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  119 bits (301), Expect = 3e-28
 Identities = 60/445 (13%), Positives = 117/445 (26%), Gaps = 99/445 (22%)

Query: 382 VLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLIL 441
            L  + N        +  +L  L  LD+    +  +  +    +  RL  L L+ N LI 
Sbjct: 37  CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT-FQSQHRLDTLVLTANPLI- 94

Query: 442 NFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPN 501
                        +               L        L      IS        +    
Sbjct: 95  ------------FMA-----------ETALSGPKALKHLFFIQTGISSIDFIPLHNQ-KT 130

Query: 502 LYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGS 561
           L  L L  NH + +              +D   N+                         
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLK-VLDFQNNAIHYLSK-----------------ED 172

Query: 562 LSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCM- 620
           +S L Q +      L+L+ N ++  +   + +      LN    +    I   +  + + 
Sbjct: 173 MSSLQQAT---NLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ 228

Query: 621 -MLSLHLRNNSFIGELPSSVKSF--TQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRS 677
            +      +       P+  +      +  ++L  +    I           L  L L +
Sbjct: 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF-HCFSGLQELDLTA 287

Query: 678 NNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYY 737
            +    +P  +  L  ++ L LS N          +N  ++                   
Sbjct: 288 THLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL------------------- 327

Query: 738 NDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVT--SLVGLISLNLSKNSLT-- 793
                                   + +  N    E+      +L  L  L+LS + +   
Sbjct: 328 ----------------------THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365

Query: 794 GPIPSKIGGLTLLNSLDLSKNMLMR 818
                ++  L+ L SL+LS N  + 
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLS 390

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.1 bits (128), Expect = 3e-07
 Identities = 18/173 (10%), Positives = 37/173 (21%), Gaps = 46/173 (26%)

Query: 647 VLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISG 706
             +  +  ++ I              L    N            L  +  LDL++  I  
Sbjct: 16  TYNCENLGLNEIPG----TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 707 TVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSS 766
                  +                                            + ++ L++
Sbjct: 72  IHEDTFQSQHR-----------------------------------------LDTLVLTA 90

Query: 767 NRLYGEIPEV-TSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLMR 818
           N L        +    L  L   +  ++      +     L SL L  N +  
Sbjct: 91  NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS 143

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  192 bits (489), Expect = 2e-52
 Identities = 106/608 (17%), Positives = 178/608 (29%), Gaps = 112/608 (18%)

Query: 215 PSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLD 274
            S   + L    L  + + S  +FS     L  LDLS  ++        ++    L  L 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSE----LQWLDLSRCEIETIEDK-AWHGLHHLSNLI 86

Query: 275 LSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRALYQDSNNLTDL-L 332
           L+ N +Q      +F   TSL  L     +L S+       L  L+ L    N +    L
Sbjct: 87  LTGNPIQS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKL 145

Query: 333 PNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTG 392
           P  F  L+N     L  + L+ N ++    +      L+E      +   L ++ N    
Sbjct: 146 PAYFSNLTN-----LVHVDLSYNYIQTITVND--LQFLRENP---QVNLSLDMSLNPID- 194

Query: 393 TLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFE 452
            +     Q  +L  L +  N     I +  L NL+ L    L                  
Sbjct: 195 FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254

Query: 453 LNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHF 512
           +  +                      E  ++           F  L+ N+  ++L+    
Sbjct: 255 MEGL----------------CDVTIDEFRLTYTNDFSDDIVKFHCLA-NVSAMSLAGVSI 297

Query: 513 TGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEH 572
              L D+ + F      + +     +   P + L                          
Sbjct: 298 KY-LEDVPKHFKWQ--SLSIIRCQLKQ-FPTLDLP------------------------F 329

Query: 573 FRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMM--LSLHLRNNS 630
            + L L+ N  S            L+ L+L+ N  S     S           L L  N 
Sbjct: 330 LKSLTLTMNKGSISFKKV--ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387

Query: 631 FIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCH 690
               + ++     +L  LD  H+ +  +       SL  L+ L +   N           
Sbjct: 388 -AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446

Query: 691 LQRIQVLDLSQNNISGTVPQC-LNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKD 749
           L  +  L ++ N+           N T +T                              
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLT------------------------------ 476

Query: 750 SEYRNTLGLVKSIDLSSNRLYGEIPEV-TSLVGLISLNLSKNSLTGPIPSKIGGLTLLNS 808
                       +DLS  +L      V  +L  L  LN+S N+L     S    L  L++
Sbjct: 477 -----------FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525

Query: 809 LDLSKNML 816
           LD S N +
Sbjct: 526 LDCSFNRI 533

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  186 bits (475), Expect = 2e-50
 Identities = 98/640 (15%), Positives = 179/640 (27%), Gaps = 137/640 (21%)

Query: 89  HVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLS 148
               ++L   S+ PL+   S S      L +L++   +    +  A+   L ++ +L L+
Sbjct: 33  STKNIDL---SFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW-HGLHHLSNLILT 88

Query: 149 NAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSK-KLEWLSQLSFLEYVRLNQVNLGEATDW 207
                   P     LTSL+ L        L+  +   + QL  L+ + +    +      
Sbjct: 89  GNPIQSFSPGSFSGLTSLENLVAVETK--LASLESFPIGQLITLKKLNVAHNFIHSCKL- 145

Query: 208 LQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSS 267
               S L +L  + L    + ++  +       + +    LD+SLN +   +    F   
Sbjct: 146 PAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI 204

Query: 268 SSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSV-------PKSFRNLCRLRA 320
             L  L L  N     I  +   N   L    L   +           P     LC +  
Sbjct: 205 K-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263

Query: 321 --LYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDN 378
                   N        F  L+N     +  + L    ++  L D+      + L +   
Sbjct: 264 DEFRLTYTNDFSDDIVKFHCLAN-----VSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRC 317

Query: 379 -----------MLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEA-HLSNL 426
                       L  L L  N+ + +       L  L  LD++ N+L      +      
Sbjct: 318 QLKQFPTLDLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGT 375

Query: 427 SRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAE 486
           + L +LDLS N  I                                              
Sbjct: 376 NSLRHLDLSFNGAI---------------------------------------------- 389

Query: 487 ISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPL 546
               +   F  L   L +L+  H+    +                               
Sbjct: 390 ---IMSANFMGL-EELQHLDFQHSTLKRVTE----------------------------- 416

Query: 547 TVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNK 606
                  F ++             E   YLD+S      +          L  L +A N 
Sbjct: 417 ----FSAFLSL-------------EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459

Query: 607 FSGKIPDSMDFNCMML-SLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGD 665
           F      ++  N   L  L L              +  +L +L++ HN +  +  +    
Sbjct: 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519

Query: 666 SLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNIS 705
            L  L  L    N       +     + +   +L+ N+++
Sbjct: 520 -LYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  163 bits (414), Expect = 1e-42
 Identities = 104/557 (18%), Positives = 175/557 (31%), Gaps = 88/557 (15%)

Query: 267 SSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRALYQDS 325
               +       KL   +PD     P+S   +DLS N L  +   SF N   L+ L    
Sbjct: 10  VVPNITYQCMDQKLSK-VPDDI---PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSR 65

Query: 326 NNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYL 385
             +  +    +  L +     L  L L  N ++   P    FS L  L         L  
Sbjct: 66  CEIETIEDKAWHGLHH-----LSNLILTGNPIQSFSPG--SFSGLTSLE-------NLVA 111

Query: 386 NNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGS 445
              +     +  IGQL  L+ L+VA N +      A+ SNL+ L ++DLS+N +      
Sbjct: 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI------ 165

Query: 446 GWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYL 505
                     I +   +   + P+   +      LD+S   I       F  +   L+ L
Sbjct: 166 --------QTITVNDLQFLRENPQVNLS------LDMSLNPIDFIQDQAFQGI--KLHEL 209

Query: 506 NLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFL 565
            L  N  +  +     +  A      L    F                 +      +  L
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF-----------KDERNLEIFEPSIMEGL 258

Query: 566 CQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLH 625
           C ++ +      L+      +          ++ ++LA         + +  +    SL 
Sbjct: 259 CDVTIDE---FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLS 313

Query: 626 LRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVP 685
           +     + + P+       L  L L  NK S         +LP L  L L S N      
Sbjct: 314 IIRCQ-LKQFPTL--DLPFLKSLTLTMNKGSISFKKV---ALPSLSYLDL-SRNALSFSG 366

Query: 686 VQVCH---LQRIQVLDLSQNNISGTVPQCLNNLTAMTA-NKSSNAMIRYPLRTDYYNDHA 741
                      ++ LDLS N     +      L  +   +   + + R    + + +   
Sbjct: 367 CCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425

Query: 742 LLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEV-TSLVGLISLNLSKNSLTGPIPSKI 800
           L                   +D+S      +   +   L  L +L ++ NS      S +
Sbjct: 426 L-----------------LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

Query: 801 -GGLTLLNSLDLSKNML 816
               T L  LDLSK  L
Sbjct: 469 FANTTNLTFLDLSKCQL 485

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 89.3 bits (222), Expect = 1e-18
 Identities = 50/233 (21%), Positives = 91/233 (39%), Gaps = 20/233 (8%)

Query: 105 GNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQ-LGNL 163
           G  S S +G   L +L++ +N      + A    L+ ++HLD  ++       +    +L
Sbjct: 366 GCCSYSDLGTNSLRHLDLSFNGA--IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423

Query: 164 TSLQYLDLSFN-FDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQL 222
             L YLD+S+    +          L+ L  +++   N  +      V +   +LT L L
Sbjct: 424 EKLLYLDISYTNTKIDFD--GIFLGLTSLNTLKMAG-NSFKDNTLSNVFANTTNLTFLDL 480

Query: 223 RGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQG 282
             C L  +       F      L  L++S N++   +    +N   SL  LD S N+++ 
Sbjct: 481 SKCQLEQISWGV---FDTLH-RLQLLNMSHNNLL-FLDSSHYNQLYSLSTLDCSFNRIET 535

Query: 283 PIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNL 335
                    P SL++ +L+NN +  +       C  +   Q        L N+
Sbjct: 536 -SKGILQHFPKSLAFFNLTNNSVACI-------CEHQKFLQWVKEQKQFLVNV 580

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.4 bits (134), Expect = 5e-08
 Identities = 28/185 (15%), Positives = 51/185 (27%), Gaps = 47/185 (25%)

Query: 633 GELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQ 692
           G L   ++    +T       K+S +      D       + L  N           +  
Sbjct: 2   GSLNPCIEVVPNITY-QCMDQKLSKVPD----DIPSSTKNIDLSFNPLKILKSYSFSNFS 56

Query: 693 RIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEY 752
            +Q LDLS+  I     +  + L  +                                  
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHL---------------------------------- 82

Query: 753 RNTLGLVKSIDLSSNRLYGEIPEV-TSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDL 811
                   ++ L+ N +    P   + L  L +L   +  L       IG L  L  L++
Sbjct: 83  -------SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135

Query: 812 SKNML 816
           + N +
Sbjct: 136 AHNFI 140

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  169 bits (430), Expect = 5e-47
 Identities = 61/295 (20%), Positives = 103/295 (34%), Gaps = 49/295 (16%)

Query: 528 PEIDLSANSFEGPIPPI---PLTVTSLILFKNMFSGSLSFLCQISD-EHFRYLDLSD-NL 582
           P  D    ++ G +         V +L L              +++  +  +L +   N 
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 583 LSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMML-SLHLRNNSFIGELPSSVKS 641
           L G +P       +L  L + +   SG IPD +      L +L    N+  G LP S+ S
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSGTLPPSISS 147

Query: 642 FTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQ 701
              L  +    N+ISG IP   G        +++  N   G++P    +L  +  +DLS+
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSR 206

Query: 702 NNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKS 761
           N + G       +                                               
Sbjct: 207 NMLEGDASVLFGSDKNTQ-----------------------------------------K 225

Query: 762 IDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
           I L+ N L  ++ +V     L  L+L  N + G +P  +  L  L+SL++S N L
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  165 bits (419), Expect = 2e-45
 Identities = 100/406 (24%), Positives = 149/406 (36%), Gaps = 114/406 (28%)

Query: 41  CIERERQALLMFKQGLIDEYGHLSSWGNEDDKKDCC--KWRGVSCSN--QTGHVTMLNLQ 96
           C  +++QALL  K+ L +    LSSW       DCC   W GV C    QT  V  L+L 
Sbjct: 3   CNPQDKQALLQIKKDLGNPT-TLSSW---LPTTDCCNRTWLGVLCDTDTQTYRVNNLDL- 57

Query: 97  FRSYMPLRG--NISSSLIGLQHLNYLNM-KYNDFGGKQIPAFIGSLKNIRHLDLSNAGFT 153
             S + L     I SSL  L +LN+L +   N+  G  IP  I  L  + +L +++   +
Sbjct: 58  --SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVS 114

Query: 154 GRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQ 213
           G +P  L  + +L  LD S+N                                       
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYN--------------------------------------- 135

Query: 214 LPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYL 273
                   L G  LP  I+S          +L  +    N +S ++     + S     +
Sbjct: 136 -------ALSG-TLPPSISSLP--------NLVGITFDGNRISGAIPDSYGSFSKLFTSM 179

Query: 274 DLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLV-SVPKSFRNLCRLRALYQDSNNLTDLL 332
            +S N+L G IP + F N  +L+++DLS N L       F +                  
Sbjct: 180 TISRNRLTGKIPPT-FAN-LNLAFVDLSRNMLEGDASVLFGSD----------------- 220

Query: 333 PNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTG 392
                          + + L  N L   L  + L  +L            L L NNR  G
Sbjct: 221 ------------KNTQKIHLAKNSLAFDLGKVGLSKNLNG----------LDLRNNRIYG 258

Query: 393 TLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNS 438
           TL + + QL  L  L+V+ N+L G I +    NL R      ++N 
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  142 bits (360), Expect = 1e-37
 Identities = 73/320 (22%), Positives = 112/320 (35%), Gaps = 77/320 (24%)

Query: 499 SPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEI---------DLS-ANSFEGPIPP----- 543
           +  +  L+LS  +     P         P  +          +   N+  GPIPP     
Sbjct: 49  TYRVNNLDLSGLNLPKPYP--------IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL 100

Query: 544 IPLTVTSLILFKNMFSGSL-SFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNL 602
             L    L +     SG++  FL QI       LD S N LSG LP    +   L  +  
Sbjct: 101 TQLHY--LYITHTNVSGAIPDFLSQIK--TLVTLDFSYNALSGTLPPSISSLPNLVGITF 156

Query: 603 ANNKFSGKIPDSMDFNCMMLS--LHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIP 660
             N+ SG IPDS   +   L   + +  N   G++P +  +   L  +DL  N + G   
Sbjct: 157 DGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS 214

Query: 661 AWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTA 720
              G S  +   + L  N+    +  +V   + +  LDL  N I GT+PQ L  L  +  
Sbjct: 215 VLFG-SDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH- 271

Query: 721 NKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLV 780
                                                   S+++S N L GEIP+  +L 
Sbjct: 272 ----------------------------------------SLNVSFNNLCGEIPQGGNLQ 291

Query: 781 GLISLNLSKNSLT--GPIPS 798
                  + N      P+P+
Sbjct: 292 RFDVSAYANNKCLCGSPLPA 311

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  140 bits (356), Expect = 5e-37
 Identities = 67/339 (19%), Positives = 124/339 (36%), Gaps = 86/339 (25%)

Query: 387 NNRFTGTLTKSIGQLSQLELLDVASNSLKGMIT-EAHLSNLSRLTYLDLSHNSLILNFGS 445
           N  + G L  +  Q  ++  LD++  +L       + L+NL  L +L +   + +     
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL----V 90

Query: 446 GWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYL 505
           G +P        +                                           L+YL
Sbjct: 91  GPIPPA------IAKLT--------------------------------------QLHYL 106

Query: 506 NLSHNHFTGMLPD----LSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGS 561
            ++H + +G +PD    +          +D S N+  G +PP      S+         S
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLV-----TLDFSYNALSGTLPP------SI--------SS 147

Query: 562 LSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKL-TVLNLANNKFSGKIPDSMDFNCM 620
           L  L          +    N +SG +P+   ++ KL T + ++ N+ +GKIP +   N  
Sbjct: 148 LPNL--------VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF-ANLN 198

Query: 621 MLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNF 680
           +  + L  N   G+      S      + L  N ++  +   +G    +L  L LR+N  
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VG-LSKNLNGLDLRNNRI 256

Query: 681 HGRVPVQVCHLQRIQVLDLSQNNISGTVPQ--CLNNLTA 717
           +G +P  +  L+ +  L++S NN+ G +PQ   L     
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDV 295

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  134 bits (339), Expect = 8e-35
 Identities = 72/359 (20%), Positives = 117/359 (32%), Gaps = 87/359 (24%)

Query: 287 SAFPNPTSLS----YLDLSNNQLVSV-PKSFRNLCRLRALYQDSNNL--TDLLPNLFLKL 339
               NPT+LS      D  N   + V   +     R+  L     NL     +P+    L
Sbjct: 16  KDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANL 75

Query: 340 SNCSRDTLEILQL-NSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSI 398
                  L  L +   N L G +P      ++ +L      L  LY+ +   +G +   +
Sbjct: 76  PY-----LNFLYIGGINNLVGPIP-----PAIAKLT----QLHYLYITHTNVSGAIPDFL 121

Query: 399 GQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRL 458
            Q+  L  LD + N+L G +  + +S+L  L  +    N +                   
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRI------------------- 161

Query: 459 GACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPD 518
                                        S  +P+ +   S     + +S N  TG +P 
Sbjct: 162 -----------------------------SGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192

Query: 519 ----LSQKFTAYPPEIDLSANSFEGPIPPI---PLTVTSLILFKNMFSGSLSFLCQISDE 571
               L+  F      +DLS N  EG    +         + L KN  +  L  +      
Sbjct: 193 TFANLNLAF------VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK-- 244

Query: 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNS 630
           +   LDL +N + G LP      + L  LN++ N   G+IP   +           NN 
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ-RFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 741 ALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTG--PIP 797
           ALL  K+           + + D  +    G +    T    + +L+LS  +L    PIP
Sbjct: 10  ALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP 69

Query: 798 SKIGGLTLLNSLDLSKN 814
           S +  L  LN L +   
Sbjct: 70  SSLANLPYLNFLYIGGI 86

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  174 bits (443), Expect = 2e-45
 Identities = 117/585 (20%), Positives = 203/585 (34%), Gaps = 53/585 (9%)

Query: 143 RHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLG 202
           R         T +VP     L + + L LSFN       +  ++  SF    +L  + LG
Sbjct: 7   RIAFYRFCNLT-QVP---QVLNTTERLLLSFN------YIRTVTASSFPFLEQLQLLELG 56

Query: 203 ----EATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSN- 257
                 T   +    LP+L  L L    +  +      +F      L  L L    +S+ 
Sbjct: 57  SQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD---AFQGLF-HLFELRLYFCGLSDA 112

Query: 258 SVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNL- 315
            +    F +  +L  LDLS N+++      +F    SL  +D S+NQ+  V +     L 
Sbjct: 113 VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172

Query: 316 -CRLRALYQDSNNLTDLLPNLFLKLSNCSRD-TLEILQLNSNMLRGSLPDI--TLFSSLK 371
              L      +N+L   +   + K  N  R+  LEIL ++ N     +        S  +
Sbjct: 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232

Query: 372 ELHL-YDNMLDVLYLNNNRFTGTLTKSIGQL--SQLELLDVASNSLKGMITEAHLSNLSR 428
              L   + +       +        +   L  S +  LD++   +   +       L  
Sbjct: 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKD 291

Query: 429 LTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEIS 488
           L  L+L++N +       +     L ++ L     G  +        K + +D+    I+
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351

Query: 489 DTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTV 548
                 F  L   L  L+L  N  T  +  +        P+I LS N     +P I LT 
Sbjct: 352 IIQDQTFKFL-EKLQTLDLRDNALT-TIHFIPS-----IPDIFLSGNKLVT-LPKINLTA 403

Query: 549 TSLILFKNMFSG--SLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNW-QKLTVLNLANN 605
             + L +N       L FL ++   H + L L+ N  S    + + +    L  L L  N
Sbjct: 404 NLIHLSENRLENLDILYFLLRVP--HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461

Query: 606 KFSGKIPDSMD---FNCM--MLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIP 660
                    +    F  +  +  L+L +N      P      T L  L L  N+++ +  
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH 521

Query: 661 AWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNIS 705
             +     +L +L +  N               + VLD++ N   
Sbjct: 522 NDL---PANLEILDISRNQLLA---PNPDVFVSLSVLDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  173 bits (440), Expect = 5e-45
 Identities = 127/615 (20%), Positives = 206/615 (33%), Gaps = 83/615 (13%)

Query: 118 NYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDM 177
                ++ +    Q+P     L     L LS              L  LQ L+L   +  
Sbjct: 7   RIAFYRFCNL--TQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP 61

Query: 178 LSKKLEWLSQLSFLEYVRLNQVNLGE-ATDWLQVVSQLPSLTELQLRGCNLPSVIASSSV 236
           L+   E    L  L  + L    +     D  Q    L  L EL+L  C L   +     
Sbjct: 62  LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ---GLFHLFELRLYFCGLSDAVLKDG- 117

Query: 237 SFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPN--PTS 294
            F N   +L  LDLS N + +   +  F   +SL  +D SSN++   + +         +
Sbjct: 118 YFRNLK-ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL-VCEHELEPLQGKT 175

Query: 295 LSYLDLSNNQLVSVP--------KSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDT 346
           LS+  L+ N L S            FRN+  L  L    N  T  +   F    + S+  
Sbjct: 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNM-VLEILDVSGNGWTVDITGNFSNAISKSQAF 234

Query: 347 LEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLEL 406
             IL  +         +I          L  + +  L L++       ++    L  L++
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294

Query: 407 LDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQ 466
           L++A N +   I +     L  L  L+LS+N L   +                       
Sbjct: 295 LNLAYNKINK-IADEAFYGLDNLQVLNLSYNLLGELY----------------------- 330

Query: 467 FPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAY 526
                    K + +D+    I+      F  L   L  L+L  N  T  +  +       
Sbjct: 331 -SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL-EKLQTLDLRDNALT-TIHFIPS----- 382

Query: 527 PPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSG--SLSFLCQISDEHFRYLDLSDNLLS 584
            P+I LS N     +P I LT   + L +N       L FL ++   H + L L+ N  S
Sbjct: 383 IPDIFLSGNKLVT-LPKINLTANLIHLSENRLENLDILYFLLRVP--HLQILILNQNRFS 439

Query: 585 GELPNCSKNW-QKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFT 643
               + + +    L  L L  N         +                        +  +
Sbjct: 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELC-------------------WDVFEGLS 480

Query: 644 QLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNN 703
            L VL L HN ++ + P  +   L  L  LSL SN               +++LD+S+N 
Sbjct: 481 HLQVLYLNHNYLNSL-PPGVFSHLTALRGLSLNSNRLTVLSHND--LPANLEILDISRNQ 537

Query: 704 ISGTVPQCLNNLTAM 718
           +    P    +L+ +
Sbjct: 538 LLAPNPDVFVSLSVL 552

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  158 bits (400), Expect = 5e-40
 Identities = 114/602 (18%), Positives = 199/602 (33%), Gaps = 94/602 (15%)

Query: 243 RSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSN 302
            +   L LS N +  +V    F     L  L+L S      I   AF N  +L  LDL +
Sbjct: 24  NTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 303 NQLVSVP-KSFRNLCRLRALYQDSNNLTD--LLPNLFLKLSNCSRDTLEILQLNSNMLRG 359
           +++  +   +F+ L  L  L      L+D  L    F  L       L  L L+ N +R 
Sbjct: 83  SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA-----LTRLDLSKNQIR- 136

Query: 360 SLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQ--LELLDVASNSLKGM 417
           SL     F  L  L         +  ++N+        +  L    L    +A+NSL   
Sbjct: 137 SLYLHPSFGKLNSLK-------SIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR 189

Query: 418 ITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKF 477
           ++      ++    + L    +  N  +  +     N I              L   +  
Sbjct: 190 VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ-------AFSLILAHHI 242

Query: 478 SELDVSAAEISDTVPNWFWDL-SPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANS 536
                    I D   N F  L   ++ +L+LSH     +   + +        ++L+ N 
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK-DLKVLNLAYNK 301

Query: 537 FEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQK 596
                           +    F G L  L        + L+LS NLL     +      K
Sbjct: 302 INK-------------IADEAFYG-LDNL--------QVLNLSYNLLGELYSSNFYGLPK 339

Query: 597 LTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNN--SFIGELPS------------SVKSF 642
           +  ++L  N  +     +  F   + +L LR+N  + I  +PS            ++   
Sbjct: 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKI 399

Query: 643 T-QLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCH-LQRIQVLDLS 700
                ++ L  N++  +   +    +P L +L L  N F      Q       ++ L L 
Sbjct: 400 NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459

Query: 701 QNNISGTVPQCLN-----NLTAMTA-NKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRN 754
           +N +       L       L+ +     + N +   P                      +
Sbjct: 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLP------------------PGVFS 501

Query: 755 TLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKN 814
            L  ++ + L+SNRL   +        L  L++S+N L  P P        L+ LD++ N
Sbjct: 502 HLTALRGLSLNSNRL-TVLSHNDLPANLEILDISRNQLLAPNPDV---FVSLSVLDITHN 557

Query: 815 ML 816
             
Sbjct: 558 KF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  144 bits (366), Expect = 7e-36
 Identities = 91/481 (18%), Positives = 172/481 (35%), Gaps = 65/481 (13%)

Query: 108 SSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLT--S 165
                 L+ L  L++  N      +    G L +++ +D S+        ++L  L   +
Sbjct: 116 DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175

Query: 166 LQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGE-------------ATDWLQVVS 212
           L +  L+ N       ++W   ++    + L  +++               A    Q  S
Sbjct: 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS 235

Query: 213 --QLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSL 270
                 +        N+     ++    + S  S+ HLDLS   V  S+   +F +   L
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARS--SVRHLDLSHGFVF-SLNSRVFETLKDL 292

Query: 271 VYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRALYQDSNNLT 329
             L+L+ NK+   I D AF    +L  L+LS N L  +   +F  L ++  +    N++ 
Sbjct: 293 KVLNLAYNKINK-IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351

Query: 330 DLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNML--------- 380
            +    F  L       L+ L L  N    +L  I    S+ ++ L  N L         
Sbjct: 352 IIQDQTFKFLEK-----LQTLDLRDN----ALTTIHFIPSIPDIFLSGNKLVTLPKINLT 402

Query: 381 -DVLYLNNNRFTG-TLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNS 438
            ++++L+ NR     +   + ++  L++L +  N       +   S    L  L L  N 
Sbjct: 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462

Query: 439 LILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDL 498
           L L + +         +  L                     L ++   ++   P  F  L
Sbjct: 463 LQLAWETELCWDVFEGLSHL-------------------QVLYLNHNYLNSLPPGVFSHL 503

Query: 499 SPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMF 558
              L  L+L+ N  T +  +      A    +D+S N    P P + ++++ L +  N F
Sbjct: 504 -TALRGLSLNSNRLTVLSHND---LPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKF 559

Query: 559 S 559
            
Sbjct: 560 I 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  139 bits (352), Expect = 4e-34
 Identities = 111/561 (19%), Positives = 177/561 (31%), Gaps = 87/561 (15%)

Query: 294 SLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLN 353
                      L  VP+          L    N +  +  + F  L       L++L+L 
Sbjct: 5   DGRIAFYRFCNLTQVPQVLNT---TERLLLSFNYIRTVTASSFPFLEQ-----LQLLELG 56

Query: 354 SNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNS 413
           S     ++     F +L  L        +L L +++       +   L  L  L +    
Sbjct: 57  SQYTPLTIDK-EAFRNLPNLR-------ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG 108

Query: 414 LK-GMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQ 472
           L   ++ + +  NL  LT LDLS N +                       +         
Sbjct: 109 LSDAVLKDGYFRNLKALTRLDLSKNQI-----------------------RSLYLHPSFG 145

Query: 473 TQNKFSELDVSAAEISDTVPNWFWDLS-PNLYYLNLSHNHFTGMLPDLSQKFTAYPPEI- 530
             N    +D S+ +I     +    L    L + +L+ N     +     K       + 
Sbjct: 146 KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205

Query: 531 ----DLSANSFEGPIPPI------PLTVTSLILFKNMFSGSLSF--LCQISDEHF----- 573
               D+S N +   I              SLIL  ++      F  +       F     
Sbjct: 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR 265

Query: 574 ---RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMML-SLHLRNN 629
              R+LDLS   +        +  + L VLNLA NK + KI D   +    L  L+L  N
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYN 324

Query: 630 SFIGELPSSV-KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV 688
             +GEL SS      ++  +DL  N I+ II       L  L  L LR N         +
Sbjct: 325 L-LGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALT-----TI 377

Query: 689 CHLQRIQVLDLSQNNISG--TVPQCLNNL----TAMTANKSSNAMIRYP-LRTDYYNDHA 741
             +  I  + LS N +     +    N +      +        ++R P L+    N + 
Sbjct: 378 HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR 437

Query: 742 LLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEV------TSLVGLISLNLSKNSLTGP 795
                    +  +    ++ + L  N L               L  L  L L+ N L   
Sbjct: 438 F--SSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495

Query: 796 IPSKIGGLTLLNSLDLSKNML 816
            P     LT L  L L+ N L
Sbjct: 496 PPGVFSHLTALRGLSLNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  121 bits (306), Expect = 2e-28
 Identities = 75/337 (22%), Positives = 117/337 (34%), Gaps = 42/337 (12%)

Query: 108 SSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQ 167
           S     L+ L  LN+ YN        AF G L N++ L+LS              L  + 
Sbjct: 283 SRVFETLKDLKVLNLAYNKINKIADEAFYG-LDNLQVLNLSYNLLGELYSSNFYGLPKVA 341

Query: 168 YLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNL 227
           Y+DL  N  +   + +    L  L+ + L    L         +  +PS+ ++ L G  L
Sbjct: 342 YIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNALTT-------IHFIPSIPDIFLSGNKL 393

Query: 228 PSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDS 287
                   V+    + +   + LS N + N    +       L  L L+ N+      D 
Sbjct: 394 --------VTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445

Query: 288 AFPNPTSLSYLDLSNNQLVSVPKS------FRNLCRLRALYQDSNNLTDLLPNLFLKLSN 341
                 SL  L L  N L    ++      F  L  L+ LY + N L  L P +F  L+ 
Sbjct: 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505

Query: 342 CSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQL 401
                L  L LNSN L   L    L ++L+ L +  N L                +    
Sbjct: 506 -----LRGLSLNSNRLT-VLSHNDLPANLEILDISRNQLLAP-------------NPDVF 546

Query: 402 SQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNS 438
             L +LD+  N        +   N    T + ++   
Sbjct: 547 VSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPP 583

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.4 bits (149), Expect = 1e-09
 Identities = 42/240 (17%), Positives = 69/240 (28%), Gaps = 42/240 (17%)

Query: 106 NISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRV-----PYQL 160
           +I   L+ + HL  L +  N F             ++  L L                  
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

Query: 161 GNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTEL 220
             L+ LQ L L+ N       L  L    F                     S L +L  L
Sbjct: 477 EGLSHLQVLYLNHN------YLNSLPPGVF---------------------SHLTALRGL 509

Query: 221 QLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKL 280
            L    L      + +S ++   +L  LD+S N +             SL  LD++ NK 
Sbjct: 510 SLNSNRL------TVLSHNDLPANLEILDISRNQLLAPNPDVF----VSLSVLDITHNKF 559

Query: 281 QGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLS 340
                 S F N  + + + ++            +   +      +    +      LK S
Sbjct: 560 ICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFS 619

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  168 bits (428), Expect = 1e-44
 Identities = 111/587 (18%), Positives = 183/587 (31%), Gaps = 93/587 (15%)

Query: 239 SNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYL 298
            N   S  +LDLS N +   +  + F S   L  LDLS  ++Q  I D A+ + + LS L
Sbjct: 24  DNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTL 81

Query: 299 DLSNNQLVSVPK-SFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNML 357
            L+ N + S+   +F  L  L+ L     NL  L       L       L+ L +  N++
Sbjct: 82  ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT-----LKELNVAHNLI 136

Query: 358 RGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLEL----LDVASNS 413
           + S      FS+L  L         L L++N+        +  L Q+ L    LD++ N 
Sbjct: 137 Q-SFKLPEYFSNLTNLE-------HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 414 LKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQT 473
           +  +   A    +  L  L L +N   LN     +                      L+ 
Sbjct: 189 MNFIQPGA-FKEIR-LHKLTLRNNFDSLNVMKTCIQGL-----------------AGLEV 229

Query: 474 QNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYP--PEID 531
                    +   +     +    L  NL        +    L D+   F          
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGL-CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288

Query: 532 LSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCS 591
           L + + E  +           L   + +        +  +  + L  + N          
Sbjct: 289 LVSVTIER-VKDFSYNFGWQHL--ELVNCKFGQFPTLKLKSLKRLTFTSNKGGN--AFSE 343

Query: 592 KNWQKLTVLNLANNKFSGKIPDSMDFNCMM--LSLHLRNNSFIGELPSSVKSFTQLTVLD 649
            +   L  L+L+ N  S K   S           L L  N  +  + S+     QL  LD
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLD 402

Query: 650 LGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVP 709
             H+ +  +    +  SL +L+ L +   +           L  ++VL ++ N+      
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 710 Q-CLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNR 768
                 L  +T                                          +DLS  +
Sbjct: 463 PDIFTELRNLT-----------------------------------------FLDLSQCQ 481

Query: 769 LYGEIPEV-TSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKN 814
           L    P    SL  L  LN++ N L          LT L  + L  N
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  158 bits (402), Expect = 3e-41
 Identities = 110/591 (18%), Positives = 205/591 (34%), Gaps = 92/591 (15%)

Query: 131 QIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSF 190
           +IP  +    + ++LDLS         Y   +   LQ LDLS        +++ +   ++
Sbjct: 21  KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC------EIQTIEDGAY 72

Query: 191 LEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDL 250
                                  L  L+ L L G  + S+   +   FS  S SL  L  
Sbjct: 73  ---------------------QSLSHLSTLILTGNPIQSLALGA---FSGLS-SLQKLVA 107

Query: 251 SLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK 310
              +++ S+  +      +L  L+++ N +Q       F N T+L +LDLS+N++ S+  
Sbjct: 108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

Query: 311 -SFRNLCRLRA----LYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDIT 365
              R L ++      L    N +  + P  F ++       L  L L +N    ++   T
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR------LHKLTLRNNFDSLNVMK-T 219

Query: 366 LFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLEL--LDVASNSLKGMITEAHL 423
               L  L ++  +L   + N          ++  L  L +    +A             
Sbjct: 220 CIQGLAGLEVHRLVLG-EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278

Query: 424 SNLSRLTYLDLSHNSL-ILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDV 482
           + L+ ++   L   ++  +   S       L ++     +      K L+       L  
Sbjct: 279 NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK------RLTF 332

Query: 483 SAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPP--EIDLSANSFEGP 540
           ++ +  +       DL P+L +L+LS N  +      SQ          +DLS N     
Sbjct: 333 TSNKGGNAFS--EVDL-PSLEFLDLSRNGLS-FKGCCSQSDFGTTSLKYLDLSFNGVIT- 387

Query: 541 IPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCS--KNWQKLT 598
           +    L +  L                       +LD   + L  ++   S   + + L 
Sbjct: 388 MSSNFLGLEQL----------------------EHLDFQHSNLK-QMSEFSVFLSLRNLI 424

Query: 599 VLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSV-KSFTQLTVLDLGHNKISG 657
            L++++           +    +  L +  NSF       +      LT LDL   ++  
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484

Query: 658 IIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV-CHLQRIQVLDLSQNNISGT 707
           + P    +SL  L VL++ SN     VP  +   L  +Q + L  N    +
Sbjct: 485 LSPTAF-NSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  142 bits (361), Expect = 7e-36
 Identities = 110/604 (18%), Positives = 186/604 (30%), Gaps = 112/604 (18%)

Query: 89  HVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLS 148
               L+L   S+ PLR   S S      L  L++   +    +  A+  SL ++  L L+
Sbjct: 29  STKNLDL---SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY-QSLSHLSTLILT 84

Query: 149 NAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWL 208
                         L+SLQ L       + S +   +  L  L+ + +    +       
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSF-KLP 142

Query: 209 QVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSS 268
           +  S L +L  L L    + S+  +              LDLSLN + N +    F    
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAF-KEI 200

Query: 269 SLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDL------SNNQLVSVPKS-FRNLCRLRAL 321
            L  L L +N     +  +       L    L      +   L    KS    LC L   
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 322 YQDSNNLT---DLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDN 378
                 L    D + +LF  L+N S  +L  + +        + D +     + L L + 
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE------RVKDFSYNFGWQHLELVNC 314

Query: 379 MLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNS 438
                                +L  L+ L   SN      +E  L +   L +LDLS N 
Sbjct: 315 KFGQF-------------PTLKLKSLKRLTFTSNKGGNAFSEVDLPS---LEFLDLSRN- 357

Query: 439 LILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDL 498
                         L+     +             +     LD+S   +  T+ + F  L
Sbjct: 358 -------------GLSFKGCCSQ----SDFGTTSLK----YLDLSFNGVI-TMSSNFLGL 395

Query: 499 SPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMF 558
              L +L+  H++   M              +D+S          I   ++SL       
Sbjct: 396 -EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL------- 447

Query: 559 SGSLSFLCQISDEHFRYLDLSDNLLSGEL-PNCSKNWQKLTVLNLANNKFSGKIPDSMDF 617
                            L ++ N       P+     + LT L+L+  +           
Sbjct: 448 ---------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE--------- 483

Query: 618 NCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRS 677
                   L   +F         S + L VL++  N++   +P  I D L  L  + L +
Sbjct: 484 -------QLSPTAF--------NSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHT 527

Query: 678 NNFH 681
           N + 
Sbjct: 528 NPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  142 bits (360), Expect = 8e-36
 Identities = 109/551 (19%), Positives = 171/551 (31%), Gaps = 89/551 (16%)

Query: 274 DLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRALYQDSNNLTDLL 332
                     IPD+    P S   LDLS N L  +   SF +   L+ L      +  + 
Sbjct: 13  QCMELNFYK-IPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 333 PNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTG 392
              +  LS+     L  L L  N ++ SL     FS L  L         L         
Sbjct: 69  DGAYQSLSH-----LSTLILTGNPIQ-SLAL-GAFSGLSSLQ-------KLVAVETNLAS 114

Query: 393 TLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFE 452
                IG L  L+ L+VA N ++      + SNL+ L +LDLS N +             
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI------------- 161

Query: 453 LNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHF 512
                              Q       LD+S   ++   P  F ++   L+ L L +N  
Sbjct: 162 -------QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI--RLHKLTLRNNFD 212

Query: 513 TGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEH 572
           +  +     +  A      L    F            +    +     +L  LC ++ E 
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFR-----------NEGNLEKFDKSALEGLCNLTIEE 261

Query: 573 FR--YLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNS 630
           FR  YLD   + +             ++  +L +     ++ D   +N     L L N  
Sbjct: 262 FRLAYLDYYLDDIIDLFNCL----TNVSSFSLVSVTIE-RVKDFS-YNFGWQHLELVNCK 315

Query: 631 FIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFH--GRVPVQV 688
             G+ P+       L  L    NK            LP L  L L  N     G      
Sbjct: 316 -FGQFPTL--KLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 689 CHLQRIQVLDLSQNNISGTVPQCLNNLTAMTA-NKSSNAMIRYPLRTDYYNDHALLVWKR 747
                ++ LDLS N +  T+      L  +   +   + + +    + + +   L     
Sbjct: 370 FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL----- 423

Query: 748 KDSEYRNTLGLVKSIDLSSNRLYGEIPEV-TSLVGLISLNLSKNSLTGPIPSKI-GGLTL 805
                         +D+S          +   L  L  L ++ NS        I   L  
Sbjct: 424 ------------IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471

Query: 806 LNSLDLSKNML 816
           L  LDLS+  L
Sbjct: 472 LTFLDLSQCQL 482

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  108 bits (271), Expect = 1e-24
 Identities = 68/262 (25%), Positives = 110/262 (41%), Gaps = 23/262 (8%)

Query: 109 SSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQY 168
           S   G QHL  +N K+  F           LK+++ L  ++    G   +   +L SL++
Sbjct: 301 SYNFGWQHLELVNCKFGQFPT-------LKLKSLKRLTFTS--NKGGNAFSEVDLPSLEF 351

Query: 169 LDLSFN-FDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNL 227
           LDLS N         +     + L+Y+ L+   +            L  L  L  +  NL
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV---ITMSSNFLGLEQLEHLDFQHSNL 408

Query: 228 PSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDS 287
             +   S  S   S R+L +LD+S        +  +FN  SSL  L ++ N  Q      
Sbjct: 409 KQM---SEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

Query: 288 AFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDT 346
            F    +L++LDLS  QL  +  + F +L  L+ L   SN L  +   +F +L++     
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS----- 519

Query: 347 LEILQLNSNMLRGSLPDITLFS 368
           L+ + L++N    S P I   S
Sbjct: 520 LQKIWLHTNPWDCSCPRIDYLS 541

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 69.7 bits (171), Expect = 2e-12
 Identities = 51/302 (16%), Positives = 90/302 (29%), Gaps = 32/302 (10%)

Query: 531 DLSANSFEGPIPPIPLTVTSLILFKNMFS----GSLSFLCQISDEHFRYLDLSDNLLSGE 586
                +F      +P +  +L L  N        S     ++     + LDLS   +   
Sbjct: 13  QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPEL-----QVLDLSRCEIQTI 67

Query: 587 LPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLT 646
                ++   L+ L L  N        +      +  L     +        +     L 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 647 VLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQV----LDLSQN 702
            L++ HN I          +L +L  L L SN         +  L ++ +    LDLS N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 703 NISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSI 762
            ++   P     +        +N      ++T       L               LV   
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGL-----------EVHRLVLGE 236

Query: 763 DLSSNRLYGEIPEVTSLVGLISLNLSKNSLTG------PIPSKIGGLTLLNSLDLSKNML 816
             +   L  E  + ++L GL +L + +  L         I      LT ++S  L    +
Sbjct: 237 FRNEGNL--EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

Query: 817 MR 818
            R
Sbjct: 295 ER 296

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  161 bits (408), Expect = 4e-42
 Identities = 107/607 (17%), Positives = 208/607 (34%), Gaps = 111/607 (18%)

Query: 215 PSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLD 274
            +      R  +  S+        S  + ++  LDLS N ++  + +    + ++L  L 
Sbjct: 5   DASGVCDGRSRSFTSI-------PSGLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLI 56

Query: 275 LSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTDL-L 332
           L S+++   I   AF +  SL +LDLS+N L S+  S F  L  L+ L    N    L +
Sbjct: 57  LKSSRINT-IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGV 115

Query: 333 PNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTG 392
            +LF  L+N     L+ L++ +      +  I  F+ L  L+        L +       
Sbjct: 116 TSLFPNLTN-----LQTLRIGNVETFSEIRRID-FAGLTSLN-------ELEIKALSLRN 162

Query: 393 TLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFE 452
             ++S+  +  +  L +  +     + E     LS + YL+L   +L     S       
Sbjct: 163 YQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEV 221

Query: 453 LNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHF 512
            + ++  A +        + T   F+EL      I +     F D +  L  L   +   
Sbjct: 222 SSPMKKLAFRGS------VLTDESFNELLKLLRYILELSEVEFDDCT--LNGLGDFNPSE 273

Query: 513 TGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEH 572
           + ++ +L +  T     + +                        ++S           E 
Sbjct: 274 SDVVSELGKVETVTIRRLHIPQFYLFY-------------DLSTVYSLL---------EK 311

Query: 573 FRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSL---HLRNN 629
            + + + ++ +     + S++ + L  L+L+ N    +   +        SL    L  N
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 630 --SFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQ 687
               + +    + +   LT LD+  N    +  +        +  L+L S        V+
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQW--PEKMRFLNLSSTGIRV---VK 426

Query: 688 VCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKR 747
            C  Q ++VLD+S NN+  +    L  L                                
Sbjct: 427 TCIPQTLEVLDVSNNNLD-SFSLFLPRLQ------------------------------- 454

Query: 748 KDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLN 807
                         + +S N+L   +P+ +    L+ + +S+N L          LT L 
Sbjct: 455 -------------ELYISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500

Query: 808 SLDLSKN 814
            + L  N
Sbjct: 501 KIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  148 bits (376), Expect = 6e-38
 Identities = 112/567 (19%), Positives = 195/567 (34%), Gaps = 74/567 (13%)

Query: 145 LDLSNAGFTGRVPYQLGNLTSLQYLDLSFN-FDMLSKKLEWLSQLSFLEYVRLNQVNLGE 203
            D  +  FT  +P  L    +++ LDLSFN    +      L   + L+ + L    +  
Sbjct: 10  CDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGH--GDLRACANLQVLILKSSRINT 64

Query: 204 ATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWL 263
                     L SL  L L   +L S+   SS  F   S SL +L+L  N         L
Sbjct: 65  IEG--DAFYSLGSLEHLDLSDNHLSSL---SSSWFGPLS-SLKYLNLMGNPYQTLGVTSL 118

Query: 264 FNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRALY 322
           F + ++L  L + + +    I    F   TSL+ L++    L +    S +++  +  L 
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178

Query: 323 QDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDV 382
              +    LL      LS+     L    L        LP   + S +K+L    ++L  
Sbjct: 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQF-SPLPVDEVSSPMKKLAFRGSVLTD 237

Query: 383 LYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILN 442
              N       L + I +LS++E  D                 L+ L   + S + ++  
Sbjct: 238 ESFNELL---KLLRYILELSEVEFDDC---------------TLNGLGDFNPSESDVVSE 279

Query: 443 FGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNL 502
            G   V +  +  + +                 K   + V  +++   VP  F     +L
Sbjct: 280 LGK--VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSL 336

Query: 503 YYLNLSHNHFTGMLPDLSQKFTAYPP--EIDLSANSFEGPIPPIPLTVTSLILFKNMFSG 560
            +L+LS N         S    A+P    + LS N              S+     +   
Sbjct: 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL-----------RSMQKTGEILLT 385

Query: 561 SLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCM 620
            L  L          LD+S N     +P+  +  +K+  LNL++          +   C+
Sbjct: 386 -LKNL--------TSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI------RVVKTCI 429

Query: 621 MLS---LHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRS 677
             +   L + NN+ +           +L  L +  NK+  +  A +    P L+V+ +  
Sbjct: 430 PQTLEVLDVSNNN-LDSFSL---FLPRLQELYISRNKLKTLPDASL---FPVLLVMKISR 482

Query: 678 NNFHGRVPVQVCHLQRIQVLDLSQNNI 704
           N            L  +Q + L  N  
Sbjct: 483 NQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  143 bits (362), Expect = 3e-36
 Identities = 93/550 (16%), Positives = 182/550 (33%), Gaps = 75/550 (13%)

Query: 141 NIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFN-FDMLSKKLEWLSQLSFLEYVRLNQV 199
            ++ LDLS    T      L    +LQ L L  +  + +         L  LE++ L+  
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA--FYSLGSLEHLDLSDN 84

Query: 200 NLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSV 259
           +L   +        L SL  L L G    ++  +S   F N + +L  L +   +  + +
Sbjct: 85  HLSSLSS--SWFGPLSSLKYLNLMGNPYQTLGVTSL--FPNLT-NLQTLRIGNVETFSEI 139

Query: 260 YYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRL 318
               F   +SL  L++ +  L+      +  +   + +L L  ++   + +     L  +
Sbjct: 140 RRIDFAGLTSLNELEIKALSLRN-YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSV 198

Query: 319 RALYQDSNNLTDLLPNLFLK---LSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHL 375
           R L     NL     +        S   +       L        L  +     L E+  
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258

Query: 376 YDNML-DVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDL 434
            D  L  +   N +           +   +  L +    L   ++    S L ++  + +
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV-YSLLEKVKRITV 317

Query: 435 SHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQ-TQNKFSELDVSAAEISDTVPN 493
            ++ + L              +     +      ++L  ++N   E  +          +
Sbjct: 318 ENSKVFL--------------VPCSFSQHLKSL-EFLDLSENLMVEEYLK--------NS 354

Query: 494 WFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPP--EIDLSANSFEGPIPPIPLTVTSL 551
                 P+L  L LS NH    +    +          +D+S N+F  P+P        +
Sbjct: 355 ACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM 412

Query: 552 ILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKI 611
                                 R+L+LS   +   +  C    Q L VL+++NN      
Sbjct: 413 ----------------------RFLNLSSTGIR-VVKTC--IPQTLEVLDVSNNNLD-SF 446

Query: 612 PDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLV 671
              +     +  L++  N  +  LP +   F  L V+ +  N++   +P  I D L  L 
Sbjct: 447 SLFLPR---LQELYISRNK-LKTLPDAS-LFPVLLVMKISRNQLK-SVPDGIFDRLTSLQ 500

Query: 672 VLSLRSNNFH 681
            + L +N + 
Sbjct: 501 KIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  122 bits (308), Expect = 2e-29
 Identities = 92/559 (16%), Positives = 165/559 (29%), Gaps = 126/559 (22%)

Query: 266 SSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRALYQD 324
           S  +    D  S      IP        ++  LDLS N++  +     R    L+ L   
Sbjct: 3   SCDASGVCDGRSRSFTS-IPSG---LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILK 58

Query: 325 SNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITL--FSSLKELHLYDNMLDV 382
           S+ +  +  + F  L +     LE L L+ N L  SL        SSLK L+L  N    
Sbjct: 59  SSRINTIEGDAFYSLGS-----LEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQT 112

Query: 383 LYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILN 442
           L          +T     L+ L+ L + +      I     + L+ L  L++   SL   
Sbjct: 113 L---------GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL--- 160

Query: 443 FGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNL 502
                  +++                + L++      L +  +E +  +  +   L  ++
Sbjct: 161 ------RNYQ---------------SQSLKSIRDIHHLTLHLSESAFLLEIFADIL-SSV 198

Query: 503 YYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSL 562
            YL L   +                P   L+                S++  ++      
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG-------------SVLTDESFNELLK 245

Query: 563 SFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMML 622
                +      + D + N L    P+ S    +L  +     +                
Sbjct: 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR---------------- 289

Query: 623 SLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHG 682
            LH+       +L +      ++  + + ++K+  + P      L  L  L L  N    
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV-PCSFSQHLKSLEFLDLSENLMVE 348

Query: 683 RVPVQ---VCHLQRIQVLDLSQNNIS--GTVPQCLNNLTAMTANKSSNAMIRYPLRTDYY 737
                         +Q L LSQN++       + L  L  +T                  
Sbjct: 349 EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT------------------ 390

Query: 738 NDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIP 797
                                  S+D+S N  +           +  LNLS   +   + 
Sbjct: 391 -----------------------SLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV-VK 426

Query: 798 SKIGGLTLLNSLDLSKNML 816
           + I     L  LD+S N L
Sbjct: 427 TCI--PQTLEVLDVSNNNL 443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  114 bits (288), Expect = 8e-27
 Identities = 72/449 (16%), Positives = 151/449 (33%), Gaps = 49/449 (10%)

Query: 108 SSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQ-LGNLTSL 166
           SS    L  L YLN+  N +    + +   +L N++ L + N      +       LTSL
Sbjct: 91  SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 150

Query: 167 QYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCN 226
             L++     + + + + L  +  + ++ L+        +       L S+  L+LR  N
Sbjct: 151 NELEIKALS-LRNYQSQSLKSIRDIHHLTLHLSESAFLLE--IFADILSSVRYLELRDTN 207

Query: 227 LPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWL---FNSSSSLVYLDLSSNKLQG- 282
           L +    S +     S  +  L    + +++  +  L         L  ++     L G 
Sbjct: 208 L-ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL 266

Query: 283 ---------PIPDSAFPNPTSLSYLDLSNNQLVSVP-KSFRNLCRLRALYQDSNNLTDLL 332
                     + +       ++  L +    L       +  L +++ +  +++ +  + 
Sbjct: 267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP 326

Query: 333 PNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLF----SSLKELHLYDNMLDVLYLNNN 388
            +    L +     LE L L+ N++       +       SL+ L L  N L  +     
Sbjct: 327 CSFSQHLKS-----LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381

Query: 389 RFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWV 448
                       L  L  LD++ N+   M          ++ +L+LS   +     +   
Sbjct: 382 ILLT--------LKNLTSLDISRNTFHPM--PDSCQWPEKMRFLNLSSTGI-RVVKTCIP 430

Query: 449 PSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLS 508
            + E+  +          F   LQ      EL +S  ++            P L  + +S
Sbjct: 431 QTLEVLDVSNNNLDSFSLFLPRLQ------ELYISRNKLKTLPDASL---FPVLLVMKIS 481

Query: 509 HNHFTGMLPDLSQKFTAYPPEIDLSANSF 537
            N    +   +  + T+   +I L  N +
Sbjct: 482 RNQLKSVPDGIFDRLTSL-QKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  114 bits (288), Expect = 9e-27
 Identities = 79/383 (20%), Positives = 136/383 (35%), Gaps = 63/383 (16%)

Query: 108 SSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQ 167
                GL  LN L +K       Q  +   S+++I HL L  +     +      L+S++
Sbjct: 141 RIDFAGLTSLNELEIKALSLRNYQSQSL-KSIRDIHHLTLHLSESAFLLEIFADILSSVR 199

Query: 168 YLDLSFN---------------------------------FDMLSKKLEWLSQLSFLEYV 194
           YL+L                                    F+ L K L ++ +LS +E+ 
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259

Query: 195 RLNQVNLGE-ATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSS-RSLAHLDLSL 252
                 LG+       VVS+L  +  + +R  ++P       +S   S    +  + +  
Sbjct: 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319

Query: 253 NDVSNSVYYWLFNSSSSLVYLDLSSNKLQ--GPIPDSAFPNPTSLSYLDLSNNQLVSVPK 310
           + V   V         SL +LDLS N +        +      SL  L LS N L S+ K
Sbjct: 320 SKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378

Query: 311 ---SFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLF 367
                  L  L +L    N    + P+            +  L L+S  +R  +    + 
Sbjct: 379 TGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEK-----MRFLNLSSTGIR-VVKT-CIP 430

Query: 368 SSLKELHLYDNMLD----------VLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGM 417
            +L+ L + +N LD           LY++ N+   TL  +      L ++ ++ N LK  
Sbjct: 431 QTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLK-S 487

Query: 418 ITEAHLSNLSRLTYLDLSHNSLI 440
           + +     L+ L  + L  N   
Sbjct: 488 VPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 76.3 bits (188), Expect = 1e-14
 Identities = 60/355 (16%), Positives = 119/355 (33%), Gaps = 49/355 (13%)

Query: 500 PNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLT----VTSLILFK 555
                 +     FT +   L+         +DLS N     I    L     +  LIL  
Sbjct: 5   DASGVCDGRSRSFTSIPSGLTAAMK----SLDLSFNKITY-IGHGDLRACANLQVLILKS 59

Query: 556 NMFS----GSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKI 611
           +  +     +   L         +LDLSDN LS    +       L  LNL  N +   +
Sbjct: 60  SRINTIEGDAFYSL-----GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TL 113

Query: 612 PDSMDFNCM--MLSLHLRNNSFIGELPSSV-KSFTQLTVLDLGHNKISGIIPAWIGDSLP 668
             +  F  +  + +L + N     E+        T L  L++    +       +  S+ 
Sbjct: 114 GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL-KSIR 172

Query: 669 DLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISG---------TVPQCLNNLTAMT 719
           D+  L+L  +     + +    L  ++ L+L   N++           V   +  L    
Sbjct: 173 DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232

Query: 720 ANKSSNAMIRYPLRTDYYNDH-----------ALLVWKRKDSEYRNTLGLVKSI-----D 763
           +  +  +         Y  +             L  +   +S+  + LG V+++      
Sbjct: 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292

Query: 764 LSSNRLYGEIPEV-TSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLM 817
           +    L+ ++  V + L  +  + +  + +     S    L  L  LDLS+N+++
Sbjct: 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 72.8 bits (179), Expect = 2e-13
 Identities = 45/225 (20%), Positives = 75/225 (33%), Gaps = 25/225 (11%)

Query: 99  SYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPY 158
               L  ++S+    L+ +  + ++ +             LK++  LDLS          
Sbjct: 294 PQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQH-LKSLEFLDLSENLMVEEYLK 352

Query: 159 Q---LGNLTSLQYLDLSFN-FDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQL 214
                G   SLQ L LS N    + K  E L  L  L  + +++       D        
Sbjct: 353 NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD---SCQWP 409

Query: 215 PSLTELQLRGCNLPSVIAS-------------SSVSFSNSSRSLAHLDLSLNDVSNSVYY 261
             +  L L    +  V                +  SFS     L  L +S N +  ++  
Sbjct: 410 EKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD 468

Query: 262 WLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLV 306
                   L+ + +S N+L+  +PD  F   TSL  + L  N   
Sbjct: 469 ASL--FPVLLVMKISRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.8 bits (166), Expect = 6e-12
 Identities = 31/247 (12%), Positives = 68/247 (27%), Gaps = 43/247 (17%)

Query: 574 RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIG 633
           + LDLS N ++       +    L VL L +++ +    D+      +  L L +N    
Sbjct: 29  KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS 88

Query: 634 ELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV-CHLQ 692
              S     + L  L+L  N    +    +  +L +L  L + +      +       L 
Sbjct: 89  LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148

Query: 693 RIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEY 752
            +  L++   ++     Q L ++  +                                  
Sbjct: 149 SLNELEIKALSLRNYQSQSLKSIRDI---------------------------------- 174

Query: 753 RNTLGLVKSIDLSSNRLYGEIPEV-TSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDL 811
                    + L  +     +      L  +  L L   +L     S +    + + +  
Sbjct: 175 -------HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227

Query: 812 SKNMLMR 818
                  
Sbjct: 228 LAFRGSV 234

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.9 bits (135), Expect = 3e-08
 Identities = 41/224 (18%), Positives = 71/224 (31%), Gaps = 22/224 (9%)

Query: 597 LTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKIS 656
             V +  +  F+  IP  +     M SL L  N         +++   L VL L  ++I+
Sbjct: 7   SGVCDGRSRSFT-SIPSGLTAA--MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63

Query: 657 GIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISG-TVPQCLNNL 715
            I       SL  L  L L  N+           L  ++ L+L  N      V     NL
Sbjct: 64  TI-EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122

Query: 716 TAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPE 775
           T +             LR       + +            L  +  +++ +  L     +
Sbjct: 123 TNLQT-----------LRIGNVETFSEI-----RRIDFAGLTSLNELEIKALSLRNYQSQ 166

Query: 776 V-TSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLMR 818
              S+  +  L L  +     +      L+ +  L+L    L R
Sbjct: 167 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  133 bits (337), Expect = 3e-33
 Identities = 97/495 (19%), Positives = 183/495 (36%), Gaps = 71/495 (14%)

Query: 136 IGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVR 195
             +L       L     T  V     +L  +  L          K ++ +  L+ L  + 
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRL---GIKSIDGVEYLNNLTQIN 74

Query: 196 LNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDV 255
            +   L +    +  +  L  L ++ +    +  +   ++++      +L  L L  N +
Sbjct: 75  FSNNQLTD----ITPLKNLTKLVDILMNNNQIADITPLANLT------NLTGLTLFNNQI 124

Query: 256 SNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNL 315
           ++        + ++L  L+LSSN +      SA    TSL  L   N   V+  K   NL
Sbjct: 125 TDIDP---LKNLTNLNRLELSSNTISDI---SALSGLTSLQQLSFGNQ--VTDLKPLANL 176

Query: 316 CRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHL 375
             L  L   SN ++D+      KL+N     LE L   +N +   +  + + ++L EL L
Sbjct: 177 TTLERLDISSNKVSDISV--LAKLTN-----LESLIATNNQIS-DITPLGILTNLDELSL 228

Query: 376 YDNM------------LDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHL 423
             N             L  L L NN+ +      +  L++L  L + +N +  +     L
Sbjct: 229 NGNQLKDIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP---L 283

Query: 424 SNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVS 483
           + L+ LT L+L+ N L        + +  L  + L         P  + +  K   L   
Sbjct: 284 AGLTALTNLELNENQLEDISPISNLKN--LTYLTLYFNNISDISP--VSSLTKLQRLFFY 339

Query: 484 AAEISDTVPNWFWDLSPNLYYLNLSHNHFT-----GMLPDLSQKFTAYPPEIDLSANSFE 538
             ++SD   +   +L  N+ +L+  HN  +       L  ++        ++ L+  ++ 
Sbjct: 340 NNKVSD--VSSLANL-TNINWLSAGHNQISDLTPLANLTRIT--------QLGLNDQAWT 388

Query: 539 GPIPPIPLTVTSLILFKNMFSGSLSFLCQISD-EHFRYLDLSDNLLSGELPNCSKNWQKL 597
                    V+     KN+ +G+L     ISD   +   D++ NL S      S  + + 
Sbjct: 389 NAPVNYKANVSIPNTVKNV-TGALIAPATISDGGSYTEPDITWNLPS-YTNEVSYTFSQP 446

Query: 598 TVLNLANNKFSGKIP 612
             +      FSG + 
Sbjct: 447 VTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  122 bits (308), Expect = 1e-29
 Identities = 107/559 (19%), Positives = 197/559 (35%), Gaps = 124/559 (22%)

Query: 160 LGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTE 219
              L       L              + L  +  ++ +++ +      +  V  L +LT+
Sbjct: 20  DTALAEKMKTVLGKT---NVTDTVSQTDLDQVTTLQADRLGIKS----IDGVEYLNNLTQ 72

Query: 220 LQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNK 279
           +      L      + ++   +   L  + ++ N +++        + ++L  L L +N+
Sbjct: 73  INFSNNQL------TDITPLKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQ 123

Query: 280 LQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKL 339
           +    P     N T+L+ L+LS+N +  +  +   L  L+ L    N +TDL P     L
Sbjct: 124 ITDIDP---LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLS-FGNQVTDLKP-----L 173

Query: 340 SNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIG 399
           +N +   LE L ++SN +     DI++ + L  L         L   NN+ +      +G
Sbjct: 174 ANLTT--LERLDISSNKVS----DISVLAKLTNLE-------SLIATNNQISDI--TPLG 218

Query: 400 QLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLG 459
            L+ L+ L +  N LK + T   L++L+ LT LDL++N +              N+  L 
Sbjct: 219 ILTNLDELSLNGNQLKDIGT---LASLTNLTDLDLANNQIS-------------NLAPLS 262

Query: 460 ACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFT-----G 514
              +       L       EL + A +IS+  P     L   L  L L+ N         
Sbjct: 263 GLTK-------LT------ELKLGANQISNISP--LAGL-TALTNLELNENQLEDISPIS 306

Query: 515 MLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLT-VTSLILFKNMFSG--SLSFLCQISDE 571
            L +L+         + L  N+     P   LT +  L  + N  S   SL+ L  I   
Sbjct: 307 NLKNLT--------YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNI--- 355

Query: 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSF 631
              +L    N +S   P    N  ++T L L +  ++    +      + +   ++N + 
Sbjct: 356 --NWLSAGHNQISDLTPL--ANLTRITQLGLNDQAWTNAPVNY--KANVSIPNTVKNVTG 409

Query: 632 IGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHL 691
               P+++      T  D+  N  S                                   
Sbjct: 410 ALIAPATISDGGSYTEPDITWNLPSYT--------------------------NEVSYTF 443

Query: 692 QRIQVLDLSQNNISGTVPQ 710
            +   +       SGTV Q
Sbjct: 444 SQPVTIGKGTTTFSGTVTQ 462

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  117 bits (295), Expect = 6e-28
 Identities = 103/508 (20%), Positives = 180/508 (35%), Gaps = 104/508 (20%)

Query: 243 RSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSN 302
                  L   +V+++V          +  L      ++            +L+ ++ SN
Sbjct: 24  AEKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGIKSI---DGVEYLNNLTQINFSN 77

Query: 303 NQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLP 362
           NQL  +    +NL +L  +  ++N + D+ P     L+N +   L  L L +N +   + 
Sbjct: 78  NQLTDIT-PLKNLTKLVDILMNNNQIADITP-----LANLT--NLTGLTLFNNQIT-DID 128

Query: 363 DITLFSSLKELHLYDNM------------LDVLYLNNNRFTGTLTKSIGQLSQLELLDVA 410
            +   ++L  L L  N             L  L   N     T  K +  L+ LE LD++
Sbjct: 129 PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV---TDLKPLANLTTLERLDIS 185

Query: 411 SNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKW 470
           SN +  +     L+ L+ L  L  ++N +              +I  LG           
Sbjct: 186 SNKVSDISV---LAKLTNLESLIATNNQIS-------------DITPLGILTN------- 222

Query: 471 LQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEI 530
           L       EL ++  ++ D        L  NL  L+L++N  +  L  LS        E+
Sbjct: 223 LD------ELSLNGNQLKDIGT--LASL-TNLTDLDLANNQISN-LAPLSGLTKLT--EL 270

Query: 531 DLSANSFEGPIPPIPLT-VTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPN 589
            L AN      P   LT +T+L L +N     +S +  +   +  YL L  N +S   P 
Sbjct: 271 KLGANQISNISPLAGLTALTNLELNENQLE-DISPISNLK--NLTYLTLYFNNISDISP- 326

Query: 590 CSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLD 649
              +  KL  L   NNK S                            SS+ + T +  L 
Sbjct: 327 -VSSLTKLQRLFFYNNKVSD--------------------------VSSLANLTNINWLS 359

Query: 650 LGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTV- 708
            GHN+IS + P     +L  +  L L    +       V +   + + +  +N     + 
Sbjct: 360 AGHNQISDLTPL---ANLTRITQLGLNDQAWTN---APVNYKANVSIPNTVKNVTGALIA 413

Query: 709 PQCLNNLTAMTANKSSNAMIRYPLRTDY 736
           P  +++  + T    +  +  Y     Y
Sbjct: 414 PATISDGGSYTEPDITWNLPSYTNEVSY 441

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  113 bits (284), Expect = 1e-26
 Identities = 102/555 (18%), Positives = 179/555 (32%), Gaps = 151/555 (27%)

Query: 268 SSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNN 327
           +  +   L    +   +  +   +   ++ L      + S+      L  L  +   +N 
Sbjct: 24  AEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQ 79

Query: 328 LTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNN 387
           LTD+ P     L N ++  L  + +N+N +   +  +   ++L  L L++N +  +    
Sbjct: 80  LTDITP-----LKNLTK--LVDILMNNNQIA-DITPLANLTNLTGLTLFNNQITDI---- 127

Query: 388 NRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGW 447
                     +  L+ L  L+++SN++  +     LS L+ L  L   +           
Sbjct: 128 --------DPLKNLTNLNRLELSSNTISDISA---LSGLTSLQQLSFGNQVT-------- 168

Query: 448 VPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNL 507
                 ++  L            L+       LD+S+ ++SD   +    L  NL  L  
Sbjct: 169 ------DLKPLANLTT-------LE------RLDISSNKVSD--ISVLAKL-TNLESLIA 206

Query: 508 SHNHFTGM-----LPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSL 562
           ++N  + +     L +L         E+ L+ N  +  I  +                SL
Sbjct: 207 TNNQISDITPLGILTNLD--------ELSLNGNQLKD-IGTL---------------ASL 242

Query: 563 SFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMML 622
           + L          LDL++N +S  L   S    KLT L L  N+ S   P +       L
Sbjct: 243 TNL--------TDLDLANNQISN-LAPLS-GLTKLTELKLGANQISNISPLA---GLTAL 289

Query: 623 -SLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFH 681
            +L L  N       S + +   LT L L  N IS I P     SL  L  L   +N   
Sbjct: 290 TNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISPV---SSLTKLQRLFFYNNKVS 344

Query: 682 GRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHA 741
                 + +L  I  L    N IS   P  L NLT +T                      
Sbjct: 345 D--VSSLANLTNINWLSAGHNQISDLTP--LANLTRIT---------------------- 378

Query: 742 LLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIG 801
                               + L+            + V + +   +        P+ I 
Sbjct: 379 -------------------QLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIA-PATIS 418

Query: 802 GLTLLNSLDLSKNML 816
                   D++ N+ 
Sbjct: 419 DGGSYTEPDITWNLP 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  106 bits (268), Expect = 2e-24
 Identities = 91/548 (16%), Positives = 171/548 (31%), Gaps = 151/548 (27%)

Query: 275 LSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPN 334
                +     D+A           L    +     S  +L ++  L  D   +  +   
Sbjct: 9   TQDTPINQIFTDTALAE---KMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSIDG- 63

Query: 335 LFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTL 394
               +   +   L  +  ++N L   +  +   + L ++ + +N +  +           
Sbjct: 64  ----VEYLN--NLTQINFSNNQLT-DITPLKNLTKLVDILMNNNQIADI----------- 105

Query: 395 TKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELN 454
              +  L+ L  L + +N +  +     L NL+ L  L+LS N++              +
Sbjct: 106 -TPLANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTIS-------------D 148

Query: 455 IIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTG 514
           I  L          + L   N+ ++L                +L   L  L++S N  + 
Sbjct: 149 ISALSGLTS----LQQLSFGNQVTDLKP------------LANL-TTLERLDISSNKVSD 191

Query: 515 M-----LPDLSQKFTAYPPEIDLSANSFEGPIPPIPLT-VTSLILFKNMFSGSLSFLCQI 568
           +     L +L          +  + N      P   LT +  L L  N     +  L  +
Sbjct: 192 ISVLAKLTNLE--------SLIATNNQISDITPLGILTNLDELSLNGNQLK-DIGTLASL 242

Query: 569 SDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRN 628
           +  +   LDL++N +S  L   S    KLT L L  N+ S                    
Sbjct: 243 T--NLTDLDLANNQISN-LAPLS-GLTKLTELKLGANQISN------------------- 279

Query: 629 NSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV 688
                   S +   T LT L+L  N++  I P     +L +L  L+L  NN     PV  
Sbjct: 280 -------ISPLAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDISPVS- 328

Query: 689 CHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRK 748
             L ++Q L    N +S      L NLT +                              
Sbjct: 329 -SLTKLQRLFFYNNKVSD--VSSLANLTNIN----------------------------- 356

Query: 749 DSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNS 808
                        +    N++   +  + +L  +  L L+  + T    +    +++ N+
Sbjct: 357 ------------WLSAGHNQISD-LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNT 403

Query: 809 LDLSKNML 816
           +      L
Sbjct: 404 VKNVTGAL 411

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 83.9 bits (208), Expect = 5e-17
 Identities = 59/290 (20%), Positives = 111/290 (38%), Gaps = 40/290 (13%)

Query: 109 SSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQY 168
           + L  L +L+ L++  N    K I     SL N+  LDL+N   +   P  L  LT L  
Sbjct: 215 TPLGILTNLDELSLNGNQL--KDIGTL-ASLTNLTDLDLANNQISNLAP--LSGLTKLTE 269

Query: 169 LDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLP 228
           L L  N   +S  +  L+ L+ L  + LN+  L +    +  +S L +LT L L   N+ 
Sbjct: 270 LKLGAN--QISN-ISPLAGLTALTNLELNENQLED----ISPISNLKNLTYLTLYFNNIS 322

Query: 229 SVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSA 288
            +   SS++       L  L    N VS+        + +++ +L    N++    P   
Sbjct: 323 DISPVSSLT------KLQRLFFYNNKVSDVSS---LANLTNINWLSAGHNQISDLTP--- 370

Query: 289 FPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLE 348
             N T ++ L L++    + P +++    +    ++      + P       +       
Sbjct: 371 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL-IAPATISDGGS-----YT 424

Query: 349 ILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSI 398
              +  N+           S   E+    +    +      F+GT+T+ +
Sbjct: 425 EPDITWNLP----------SYTNEVSYTFSQPVTIGKGTTTFSGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.7 bits (135), Expect = 3e-08
 Identities = 33/194 (17%), Positives = 67/194 (34%), Gaps = 30/194 (15%)

Query: 623 SLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHG 682
           S  +  ++ I ++  +  +  +     LG   ++  +       L  +  L         
Sbjct: 5   SATITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVSQ---TDLDQVTTLQADRLGIKS 60

Query: 683 RVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHAL 742
              V+  +L  +  ++ S N ++   P  L NLT +     +N  I              
Sbjct: 61  IDGVE--YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI-------------- 102

Query: 743 LVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGG 802
                 D      L  +  + L +N++  +I  + +L  L  L LS N+++      + G
Sbjct: 103 -----ADITPLANLTNLTGLTLFNNQI-TDIDPLKNLTNLNRLELSSNTISDISA--LSG 154

Query: 803 LTLLNSLDLSKNML 816
           LT L  L     + 
Sbjct: 155 LTSLQQLSFGNQVT 168

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  128 bits (323), Expect = 2e-31
 Identities = 62/315 (19%), Positives = 111/315 (35%), Gaps = 55/315 (17%)

Query: 141 NIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVN 200
             R LDL           +  +   L+ L+L+ N             +S +E        
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN------------IVSAVEP------- 73

Query: 201 LGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVY 260
                      + L +L  L LR   L  +       F+  S +L  LD+S N +   + 
Sbjct: 74  --------GAFNNLFNLRTLGLRSNRLKLI---PLGVFTGLS-NLTKLDISENKIV-ILL 120

Query: 261 YWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLR 319
            ++F    +L  L++  N L   I   AF    SL  L L    L S+P  +  +L  L 
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLVY-ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI 179

Query: 320 ALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLF-SSLKELHLYDN 378
            L     N+  +    F +L       L++L+++      ++    L+  +L  L +   
Sbjct: 180 VLRLRHLNINAIRDYSFKRLYR-----LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234

Query: 379 --------------MLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLS 424
                          L  L L+ N  +      + +L +L+ + +    L  ++      
Sbjct: 235 NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFR 293

Query: 425 NLSRLTYLDLSHNSL 439
            L+ L  L++S N L
Sbjct: 294 GLNYLRVLNVSGNQL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  127 bits (322), Expect = 2e-31
 Identities = 74/340 (21%), Positives = 130/340 (38%), Gaps = 56/340 (16%)

Query: 215 PSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLD 274
                L L    + ++   +   F++    L  L+L+ N VS +V    FN+  +L  L 
Sbjct: 32  TETRLLDLGKNRIKTL---NQDEFASF-PHLEELELNENIVS-AVEPGAFNNLFNLRTLG 86

Query: 275 LSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVP-KSFRNLCRLRALYQDSNNLTDLLP 333
           L SN+L+  IP   F   ++L+ LD+S N++V +    F++L  L++L    N+L  +  
Sbjct: 87  LRSNRLKL-IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH 145

Query: 334 NLFLKLSNCSRDTLEILQLNSNMLRGSLPDITL--FSSLKELHLYDNM------------ 379
             F  L++     LE L L    L  S+P   L     L  L L                
Sbjct: 146 RAFSGLNS-----LEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL 199

Query: 380 --LDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHN 437
             L VL +++  +  T+T +      L  L +   +L   +    + +L  L +L+LS+N
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYN 258

Query: 438 SLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWD 497
                          ++ I              L    +  E+ +   +++   P  F  
Sbjct: 259 --------------PISTIEGSM----------LHELLRLQEIQLVGGQLAVVEPYAFRG 294

Query: 498 LSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSF 537
           L   L  LN+S N  T +   +          + L +N  
Sbjct: 295 L-NYLRVLNVSGNQLTTLEESVFHSVGNL-ETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  115 bits (291), Expect = 2e-27
 Identities = 73/443 (16%), Positives = 130/443 (29%), Gaps = 144/443 (32%)

Query: 267 SSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSV-PKSFRNLCRLRALYQDS 325
            +    LDL  N+++  +    F +   L  L+L+ N + +V P +F NL  LR L   S
Sbjct: 31  PTETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89

Query: 326 NNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYL 385
           N L  +   +F  LSN     L  L ++ N +   L D  +F  L  L         L +
Sbjct: 90  NRLKLIPLGVFTGLSN-----LTKLDISENKIV-ILLD-YMFQDLYNLK-------SLEV 135

Query: 386 NNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGS 445
            +N                             I+    S L+ L  L L   +       
Sbjct: 136 GDNDLV-------------------------YISHRAFSGLNSLEQLTLEKCN------- 163

Query: 446 GWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYL 505
                                                    ++         L   L  L
Sbjct: 164 -----------------------------------------LTSIPTEALSHL-HGLIVL 181

Query: 506 NLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFL 565
            L H +                    +   SF+                       L  L
Sbjct: 182 RLRHLNIN-----------------AIRDYSFKR----------------------LYRL 202

Query: 566 CQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMML-SL 624
                   + L++S       +         LT L++ +   +  +P     + + L  L
Sbjct: 203 --------KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFL 253

Query: 625 HLRNNSFIGELPSSV-KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGR 683
           +L  N  I  +  S+     +L  + L   +++ ++  +    L  L VL++  N     
Sbjct: 254 NLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-T 310

Query: 684 VPVQVCH-LQRIQVLDLSQNNIS 705
           +   V H +  ++ L L  N ++
Sbjct: 311 LEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 97.1 bits (242), Expect = 3e-21
 Identities = 65/411 (15%), Positives = 123/411 (29%), Gaps = 120/411 (29%)

Query: 298 LDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNML 357
           +     + V+VP+        R L    N +  L  + F    +     LE L+LN N++
Sbjct: 16  VLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPH-----LEELELNENIV 68

Query: 358 RGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGM 417
             ++     F++L  L         L L +NR           LS L  LD++ N +  +
Sbjct: 69  S-AVEPGA-FNNLFNLR-------TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-I 118

Query: 418 ITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKF 477
           + +    +L  L  L++                                        N  
Sbjct: 119 LLDYMFQDLYNLKSLEVGD--------------------------------------NDL 140

Query: 478 SELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSF 537
             +              F  L  +L  L L   + T                  +   + 
Sbjct: 141 VYIS----------HRAFSGL-NSLEQLTLEKCNLT-----------------SIPTEAL 172

Query: 538 EGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCS-KNWQK 596
                                   L  L          L L    ++  + + S K   +
Sbjct: 173 SH----------------------LHGL--------IVLRLRHLNIN-AIRDYSFKRLYR 201

Query: 597 LTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSV-KSFTQLTVLDLGHNKI 655
           L VL +++  +   +  +  +   + SL + + + +  +P    +    L  L+L +N I
Sbjct: 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPI 260

Query: 656 SGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV-CHLQRIQVLDLSQNNIS 705
           S  I   +   L  L  + L        V       L  ++VL++S N ++
Sbjct: 261 S-TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 88.2 bits (219), Expect = 2e-18
 Identities = 63/297 (21%), Positives = 97/297 (32%), Gaps = 36/297 (12%)

Query: 529 EIDLSANSFEGPIPPIPLTVTSLILFKNMFS----GSLSFLCQISDEHFRYLDLSDNLLS 584
            +      F      IP     L L KN          +    +       L+L++N++S
Sbjct: 15  AVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHL-----EELELNENIVS 69

Query: 585 GELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMML-SLHLRNNSFIGELPSSV-KSF 642
              P    N   L  L L +N+    IP  +      L  L +  N  I  L   + +  
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDL 127

Query: 643 TQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV-CHLQRIQVLDLSQ 701
             L  L++G N +  I        L  L  L+L   N    +P +   HL  + VL L  
Sbjct: 128 YNLKSLEVGDNDLVYISHRAF-SGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRH 185

Query: 702 NNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKS 761
            NI+         L                L+    +    L     +  Y   L    S
Sbjct: 186 LNINAIRDYSFKRLYR--------------LKVLEISHWPYLDTMTPNCLYGLNL---TS 228

Query: 762 IDLSSNRLYGEIPEVT--SLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
           + ++   L   +P +    LV L  LNLS N ++    S +  L  L  + L    L
Sbjct: 229 LSITHCNL-TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 85.2 bits (211), Expect = 2e-17
 Identities = 61/335 (18%), Positives = 108/335 (32%), Gaps = 50/335 (14%)

Query: 497 DLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPP--EIDLSANSFEGPIPPIPLT----VTS 550
            +      L+L  N    +  D    F ++P   E++L+ N     + P        + +
Sbjct: 29  GIPTETRLLDLGKNRIKTLNQDE---FASFPHLEELELNENIVSA-VEPGAFNNLFNLRT 84

Query: 551 LILFKNMFSGSLSFLCQISDEHF------RYLDLSDNLLSGELPNCSKNWQKLTVLNLAN 604
           L L  N           I    F        LD+S+N +   L    ++   L  L + +
Sbjct: 85  LGLRSNRLK-------LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137

Query: 605 NKFSGKIPDSMDFNCM--MLSLHLRNNSFIGELPSSV-KSFTQLTVLDLGHNKISGIIPA 661
           N     I     F+ +  +  L L   + +  +P+        L VL L H  I+ I   
Sbjct: 138 NDLV-YISHRA-FSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAI-RD 193

Query: 662 WIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTAN 721
           +    L  L VL +    +   +     +   +  L ++  N++      + +L  +   
Sbjct: 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL 253

Query: 722 KSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVT--SL 779
             S   I     +  +    L                 + I L   +L   +       L
Sbjct: 254 NLSYNPISTIEGSMLHELLRL-----------------QEIQLVGGQL-AVVEPYAFRGL 295

Query: 780 VGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKN 814
             L  LN+S N LT    S    +  L +L L  N
Sbjct: 296 NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 32/151 (21%), Positives = 56/151 (37%), Gaps = 18/151 (11%)

Query: 108 SSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQ 167
             S   L  L  L + +  +     P  +  L N+  L +++   T      + +L  L+
Sbjct: 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLR 251

Query: 168 YLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQ-----LPSLTELQL 222
           +L+LS+N       +  +      E +RL ++ L      L VV       L  L  L +
Sbjct: 252 FLNLSYN------PISTIEGSMLHELLRLQEIQLVGGQ--LAVVEPYAFRGLNYLRVLNV 303

Query: 223 RGCNLPSVIASSSVSFSNSSRSLAHLDLSLN 253
            G  L ++       F +   +L  L L  N
Sbjct: 304 SGNQLTTL---EESVFHSVG-NLETLILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 32/179 (17%), Positives = 56/179 (31%), Gaps = 48/179 (26%)

Query: 642 FTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQ 701
             Q   +     +   + P  I     +  +L L  N        +      ++ L+L++
Sbjct: 10  SAQDRAVLCHRKRFVAV-PEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNE 65

Query: 702 NNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKS 761
           N +S   P   NNL                                           +++
Sbjct: 66  NIVSAVEPGAFNNLFN-----------------------------------------LRT 84

Query: 762 IDLSSNRLYGEIPEVT--SLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLMR 818
           + L SNRL   IP      L  L  L++S+N +   +      L  L SL++  N L+ 
Sbjct: 85  LGLRSNRL-KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY 142

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  126 bits (318), Expect = 5e-31
 Identities = 97/445 (21%), Positives = 161/445 (36%), Gaps = 77/445 (17%)

Query: 268 SSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSV--PKSFRNLCRLRALYQDS 325
           + + Y+DLS N +   + +++F     L +L +       V    +FR L  L  L  D 
Sbjct: 30  AHVNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 326 NNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYL 385
           N    L    F  L+N     LE+L L    L G++     F  L  L       ++L L
Sbjct: 89  NQFLQLETGAFNGLAN-----LEVLTLTQCNLDGAVLSGNFFKPLTSL-------EMLVL 136

Query: 386 NNNRFTGTLTKSI-GQLSQLELLDVASNSLKGMITEAHLSNL--SRLTYLDLSHNSLILN 442
            +N        S    + +  +LD+  N +K  I E  L N      T L LS  +L   
Sbjct: 137 RDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQ-- 193

Query: 443 FGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNL 502
                +  + L   + G                  + LD+S     +++   F+D     
Sbjct: 194 ----DMNEYWLGWEKCGN----------PFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239

Query: 503 YYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSL 562
              +L  ++   M           P        +F+G      L  + +           
Sbjct: 240 KIQSLILSNSYNMGSSFGHTNFKDPDN-----FTFKG------LEASGV----------- 277

Query: 563 SFLCQISDEHFRYLDLSDNLLSGELPNCS-KNWQKLTVLNLANNKFSGKIPDSMDFNCMM 621
                      +  DLS + +   L      ++  L  L LA N+ + KI D+  +    
Sbjct: 278 -----------KTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTH 324

Query: 622 L-SLHLRNNSFIGELPSSV-KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNN 679
           L  L+L  N F+G + S + ++  +L VLDL +N I   +       LP+L  L+L +N 
Sbjct: 325 LLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQ 382

Query: 680 FHGRVPVQV-CHLQRIQVLDLSQNN 703
               VP  +   L  +Q + L  N 
Sbjct: 383 LK-SVPDGIFDRLTSLQKIWLHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  107 bits (268), Expect = 1e-24
 Identities = 69/341 (20%), Positives = 119/341 (34%), Gaps = 48/341 (14%)

Query: 113 GLQHLNYLNMKYNDFGGKQIPAFI-GSLKNIRHLDLSNAGFTGRVPYQL-GNLTSLQYLD 170
           GL +L  L +   +  G  +       L ++  L L +       P     N+     LD
Sbjct: 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160

Query: 171 LSFN---------FDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQ 221
           L+FN               K   L +LS +    +N+  LG          +  S+T L 
Sbjct: 161 LTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC--GNPFKNTSITTLD 218

Query: 222 LRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQ 281
           L G      +A                    + ++ +    L  S+S  +         +
Sbjct: 219 LSGNGFKESMA----------------KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262

Query: 282 GPIPDSAFPN--PTSLSYLDLSNNQLVSVPK-SFRNLCRLRALYQDSNNLTDLLPNLFLK 338
            P  +  F     + +   DLS +++ ++ K  F +   L  L    N +  +  N F  
Sbjct: 263 DP-DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG 321

Query: 339 LSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSI 398
           L++     L  L L+ N L GS+    +F +L +L        VL L+ N       +S 
Sbjct: 322 LTH-----LLKLNLSQNFL-GSIDS-RMFENLDKLE-------VLDLSYNHIRALGDQSF 367

Query: 399 GQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
             L  L+ L + +N LK  + +     L+ L  + L  N  
Sbjct: 368 LGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 99.0 bits (247), Expect = 4e-22
 Identities = 73/367 (19%), Positives = 114/367 (31%), Gaps = 65/367 (17%)

Query: 108 SSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQ 167
            +S   LQ L +L ++    G          L ++  L L    F          L +L+
Sbjct: 47  ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106

Query: 168 YLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNL 227
            L L+                       L+   L            L SL  L LR  N+
Sbjct: 107 VLTLTQC--------------------NLDGAVLSGN-----FFKPLTSLEMLVLRDNNI 141

Query: 228 PSVIASSSVSFSNSSRSLAHLDLSLNDVSNS-VYYWLFNSSSSLVYLDLSSNKLQ----- 281
             +      SF  + R    LDL+ N V +      L         L LSS  LQ     
Sbjct: 142 KKI---QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY 198

Query: 282 --GPIPDSAFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRAL-----YQDSNNLTDLLP 333
             G          TS++ LDLS N         F +      +         N  +    
Sbjct: 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258

Query: 334 NLFLKLSNCS-----RDTLEILQLNSNMLRGSLPDITL--FSSLKELHLYDN-------- 378
             F    N +        ++   L+ + +  +L       F+ L++L L  N        
Sbjct: 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDN 317

Query: 379 ------MLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYL 432
                  L  L L+ N      ++    L +LE+LD++ N ++  + +     L  L  L
Sbjct: 318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKEL 376

Query: 433 DLSHNSL 439
            L  N L
Sbjct: 377 ALDTNQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 97.5 bits (243), Expect = 2e-21
 Identities = 55/311 (17%), Positives = 105/311 (33%), Gaps = 42/311 (13%)

Query: 141 NIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVN 200
           ++ ++DLS              L  LQ+L +      L  +      LS L  ++L+   
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 201 LGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVY 260
             +        + L +L  L L  CNL   + S +                         
Sbjct: 91  FLQLET--GAFNGLANLEVLTLTQCNLDGAVLSGNF------------------------ 124

Query: 261 YWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNL--CR 317
              F   +SL  L L  N ++   P S F N      LDL+ N++ S+ +    N     
Sbjct: 125 ---FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKH 181

Query: 318 LRALYQDSNNLTDLLPNLFLKLSNCSRD---TLEILQLNSNMLRGSLPDITL----FSSL 370
              L   S  L D+           +     ++  L L+ N  + S+          + +
Sbjct: 182 FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241

Query: 371 KELHLYDNMLDVLYLNNNRFTGTLTKSIGQL--SQLELLDVASNSLKGMITEAHLSNLSR 428
           + L L ++        +  F      +   L  S ++  D++ + +   + ++  S+ + 
Sbjct: 242 QSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTD 300

Query: 429 LTYLDLSHNSL 439
           L  L L+ N +
Sbjct: 301 LEQLTLAQNEI 311

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 83.3 bits (206), Expect = 6e-17
 Identities = 86/522 (16%), Positives = 149/522 (28%), Gaps = 138/522 (26%)

Query: 299 DLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLR 358
              N  L  VP+   ++     +    N++ +L    F +L +     L+ L++      
Sbjct: 16  ICINRGLHQVPELPAHV---NYVDLSLNSIAELNETSFSRLQD-----LQFLKVEQQTPG 67

Query: 359 GSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKG-M 417
             + + T F  L  L        +L L+ N+F    T +   L+ LE+L +   +L G +
Sbjct: 68  LVIRNNT-FRGLSSL-------IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV 119

Query: 418 ITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKF 477
           ++      L+ L  L L  N                                        
Sbjct: 120 LSGNFFKPLTSLEMLVLRDN---------------------------------------- 139

Query: 478 SELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYP-PEIDLSANS 536
                    I    P  F+      + L+L+ N    +  +    F       + LS+ +
Sbjct: 140 --------NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT 191

Query: 537 FEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQK 596
            +  +    L            S                LDLS N     +     +   
Sbjct: 192 LQD-MNEYWLGWEKCGNPFKNTS-------------ITTLDLSGNGFKESMAKRFFDAIA 237

Query: 597 LTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKIS 656
            T +       S  +  S             N +F G         + +   DL  +KI 
Sbjct: 238 GTKIQSLILSNSYNMGSSFGHTNF---KDPDNFTFKG------LEASGVKTCDLSKSKIF 288

Query: 657 GIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVC-HLQRIQVLDLSQNNISGTVPQCLNNL 715
             +   +     DL  L+L  N  + ++       L  +  L+LSQN +     +   NL
Sbjct: 289 -ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL 346

Query: 716 TAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPE 775
             +                                           +DLS N +   + +
Sbjct: 347 DKLE-----------------------------------------VLDLSYNHI-RALGD 364

Query: 776 VT--SLVGLISLNLSKNSLTGPIPSKI-GGLTLLNSLDLSKN 814
            +   L  L  L L  N L   +P  I   LT L  + L  N
Sbjct: 365 QSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 75.2 bits (185), Expect = 3e-14
 Identities = 59/319 (18%), Positives = 108/319 (33%), Gaps = 51/319 (15%)

Query: 541 IPPIPLTVTSLILFKNMFS----GSLSFLCQISDEHFRYLDLSDNLLSGELP-NCSKNWQ 595
           +P +P  V  + L  N  +     S S L  +     ++L +        +  N  +   
Sbjct: 25  VPELPAHVNYVDLSLNSIAELNETSFSRLQDL-----QFLKVEQQTPGLVIRNNTFRGLS 79

Query: 596 KLTVLNLANNKFSGKIPDSMDFNCMML-SLHLRNNSFIG-ELPSSV-KSFTQLTVLDLGH 652
            L +L L  N+F  ++          L  L L   +  G  L  +  K  T L +L L  
Sbjct: 80  SLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138

Query: 653 NKISGIIPAWIGDSLPDLVVLSLRSNNFH----------GRVPVQVCHLQRIQVLDLSQN 702
           N I  I PA    ++    VL L  N                   +  L  I + D+++ 
Sbjct: 139 NNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY 198

Query: 703 NISGTVPQCL-------------NNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKD 749
            +                     N      A +  +A+    +++   ++   +      
Sbjct: 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258

Query: 750 SEYRN---------TLGLVKSIDLSSNRLYGEIPEVT--SLVGLISLNLSKNSLTGPIPS 798
           + +++             VK+ DLS +++   + +        L  L L++N +   I  
Sbjct: 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKI-FALLKSVFSHFTDLEQLTLAQNEIN-KIDD 316

Query: 799 KI-GGLTLLNSLDLSKNML 816
               GLT L  L+LS+N L
Sbjct: 317 NAFWGLTHLLKLNLSQNFL 335

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 71.7 bits (176), Expect = 3e-13
 Identities = 76/482 (15%), Positives = 129/482 (26%), Gaps = 136/482 (28%)

Query: 346 TLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSI-GQLSQL 404
            +  + L+ N +   L + T FS L++L         L +        +  +    LS L
Sbjct: 31  HVNYVDLSLNSIA-ELNE-TSFSRLQDLQ-------FLKVEQQTPGLVIRNNTFRGLSSL 81

Query: 405 ELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQG 464
            +L +  N     +     + L+ L  L L+  +L            +  ++        
Sbjct: 82  IILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNL------------DGAVLSGNF---- 124

Query: 465 PQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFT 524
             F      +     L +    I    P  F+      + L+L+ N    +  +    F 
Sbjct: 125 --FKPLTSLE----MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ 178

Query: 525 AYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLS 584
                                   T L L                       D+++  L 
Sbjct: 179 G--------------------KHFTLLRLSSI-----------------TLQDMNEYWLG 201

Query: 585 GELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNC---MMLSLHLRNNSFIGELPSSVKS 641
            E          +T L+L+ N F   +            + SL L N+            
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS------------ 249

Query: 642 FTQLTVLDLGHNKISGIIP-AWIGDSLPDLVVLSLRSNNFHGRVPVQVC-HLQRIQVLDL 699
                    GH          + G     +    L S +    +   V  H   ++ L L
Sbjct: 250 --YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL-SKSKIFALLKSVFSHFTDLEQLTL 306

Query: 700 SQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLV 759
           +QN I+         LT +                                         
Sbjct: 307 AQNEINKIDDNAFWGLTHLL---------------------------------------- 326

Query: 760 KSIDLSSNRLYGEIPEVT--SLVGLISLNLSKNSLTGPIPSKI-GGLTLLNSLDLSKNML 816
             ++LS N L G I      +L  L  L+LS N +   +  +   GL  L  L L  N L
Sbjct: 327 -KLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQL 383

Query: 817 MR 818
             
Sbjct: 384 KS 385

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  123 bits (310), Expect = 1e-30
 Identities = 68/370 (18%), Positives = 130/370 (35%), Gaps = 71/370 (19%)

Query: 160 LGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTE 219
             +L       L          +    +L  +  + +    +      +Q +  L +L  
Sbjct: 18  DADLAEGIRAVLQKA---SVTDVVTQEELESITKLVVAGEKVAS----IQGIEYLTNLEY 70

Query: 220 LQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNK 279
           L L G  +  +   S++        L +L +  N +++        + ++L  L L+ + 
Sbjct: 71  LNLNGNQITDISPLSNLV------KLTNLYIGTNKITDISA---LQNLTNLRELYLNEDN 121

Query: 280 LQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKL 339
           +    P     N T +  L+L  N  +S      N+  L  L    + + D+ P     +
Sbjct: 122 ISDISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-----I 173

Query: 340 SNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDN------------MLDVLYLNN 387
           +N +   L  L LN N +   +  +   +SL     Y N             L+ L + N
Sbjct: 174 ANLTD--LYSLSLNYNQIE-DISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGN 230

Query: 388 NRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGW 447
           N+ T      +  LSQL  L++ +N +  +     + +L++L  L++  N +        
Sbjct: 231 NKITD--LSPLANLSQLTWLEIGTNQISDINA---VKDLTKLKMLNVGSNQIS------- 278

Query: 448 VPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNL 507
                 +I  L    Q       L        L ++  ++ +        L  NL  L L
Sbjct: 279 ------DISVLNNLSQ-------LN------SLFLNNNQLGNEDMEVIGGL-TNLTTLFL 318

Query: 508 SHNHFTGMLP 517
           S NH T + P
Sbjct: 319 SQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  111 bits (280), Expect = 8e-27
 Identities = 73/450 (16%), Positives = 148/450 (32%), Gaps = 127/450 (28%)

Query: 212 SQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLV 271
           + L       L+  ++  V+    +       S+  L ++   V++          ++L 
Sbjct: 19  ADLAEGIRAVLQKASVTDVVTQEELE------SITKLVVAGEKVASIQG---IEYLTNLE 69

Query: 272 YLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDL 331
           YL+L+ N++    P     N   L+ L +  N++  +  + +NL  LR LY + +N++D+
Sbjct: 70  YLNLNGNQITDISP---LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDI 125

Query: 332 LPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFT 391
            P     L+      +  L L +N     L  ++  + L  L + ++ +  +        
Sbjct: 126 SP--LANLTK-----MYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV-------- 170

Query: 392 GTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSF 451
                 I  L+ L  L +  N ++ +     L++L+ L Y     N +            
Sbjct: 171 ----TPIANLTDLYSLSLNYNQIEDIS---PLASLTSLHYFTAYVNQIT----------- 212

Query: 452 ELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNH 511
             +I  +    +       L        L +   +I+D  P    +L   L +L +  N 
Sbjct: 213 --DITPVANMTR-------LN------SLKIGNNKITDLSP--LANL-SQLTWLEIGTNQ 254

Query: 512 FTGM-----LPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLC 566
            + +     L  L          +++ +N     I  +                +LS L 
Sbjct: 255 ISDINAVKDLTKLK--------MLNVGSNQISD-ISVL---------------NNLSQL- 289

Query: 567 QISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHL 626
                    L L++N L  E          LT L L+ N  +   P              
Sbjct: 290 -------NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-------------- 328

Query: 627 RNNSFIGELPSSVKSFTQLTVLDLGHNKIS 656
                       + S +++   D  +  I 
Sbjct: 329 ------------LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  110 bits (278), Expect = 2e-26
 Identities = 74/413 (17%), Positives = 137/413 (33%), Gaps = 79/413 (19%)

Query: 273 LDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLL 332
           L      +    PD+            L    +  V  +   L  +  L      +  + 
Sbjct: 5   LATLPAPINQIFPDADLAE---GIRAVLQKASVTDVV-TQEELESITKLVVAGEKVASIQ 60

Query: 333 PNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTG 392
                 +   +   LE L LN N +   +  ++    L  L++  N +  +         
Sbjct: 61  G-----IEYLTN--LEYLNLNGNQIT-DISPLSNLVKLTNLYIGTNKITDI--------- 103

Query: 393 TLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFE 452
               ++  L+ L  L +  +++  +     L+NL+++  L+L  N  +            
Sbjct: 104 ---SALQNLTNLRELYLNEDNISDIS---PLANLTKMYSLNLGANHNL------------ 145

Query: 453 LNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHF 512
                             L      + L V+ +++ D  P    +L  +LY L+L++N  
Sbjct: 146 -------------SDLSPLSNMTGLNYLTVTESKVKDVTP--IANL-TDLYSLSLNYNQI 189

Query: 513 TGM-----LPDLSQKFTAYPPEIDLSANSFEGPIPPIPLT-VTSLILFKNMFSGSLSFLC 566
             +     L  L               N      P   +T + SL +  N  +  LS L 
Sbjct: 190 EDISPLASLTSLH--------YFTAYVNQITDITPVANMTRLNSLKIGNNKIT-DLSPLA 240

Query: 567 QISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHL 626
            +S     +L++  N +S  +        KL +LN+ +N+ S      ++    + SL L
Sbjct: 241 NLS--QLTWLEIGTNQISD-INAVKDL-TKLKMLNVGSNQISD--ISVLNNLSQLNSLFL 294

Query: 627 RNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNN 679
            NN    E    +   T LT L L  N I+ I P     SL  +      +  
Sbjct: 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPL---ASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 88.0 bits (219), Expect = 7e-19
 Identities = 80/453 (17%), Positives = 147/453 (32%), Gaps = 137/453 (30%)

Query: 370 LKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRL 429
              L      ++ +                 L++     +   S+  ++T      L  +
Sbjct: 2   AATLATLPAPINQI------------FPDADLAEGIRAVLQKASVTDVVT---QEELESI 46

Query: 430 TYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISD 489
           T L ++   +              +I  +            L+       L+++  +I+D
Sbjct: 47  TKLVVAGEKV-------------ASIQGIEYLTN-------LE------YLNLNGNQITD 80

Query: 490 TVPNWFWDLSPNLYYLNLSHNHFT-----GMLPDLSQKFTAYPPEIDLSANSFEGPIPPI 544
             P    +L   L  L +  N  T       L +L         E+ L+ ++    I P+
Sbjct: 81  ISP--LSNL-VKLTNLYIGTNKITDISALQNLTNLR--------ELYLNEDNISD-ISPL 128

Query: 545 PLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLAN 604
                           +L+ +          L+L  N    +L   S     L  L +  
Sbjct: 129 ---------------ANLTKM--------YSLNLGANHNLSDLSPLSNM-TGLNYLTVTE 164

Query: 605 NKFSGKIPDSMDFNCMML-SLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWI 663
           +K     P +   N   L SL L  N  I ++ S + S T L       N+I+ I P   
Sbjct: 165 SKVKDVTPIA---NLTDLYSLSLNYNQ-IEDI-SPLASLTSLHYFTAYVNQITDITP--- 216

Query: 664 GDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKS 723
             ++  L  L + +N      P+   +L ++  L++  N IS      + +LT +     
Sbjct: 217 VANMTRLNSLKIGNNKITDLSPL--ANLSQLTWLEIGTNQISD--INAVKDLTKLK---- 268

Query: 724 SNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLI 783
                                                 +++ SN++  +I  + +L  L 
Sbjct: 269 -------------------------------------MLNVGSNQI-SDISVLNNLSQLN 290

Query: 784 SLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
           SL L+ N L       IGGLT L +L LS+N +
Sbjct: 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 83.0 bits (206), Expect = 4e-17
 Identities = 84/479 (17%), Positives = 152/479 (31%), Gaps = 137/479 (28%)

Query: 318 LRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYD 377
              L      +  + P+  L              L    +   +       S+ +L +  
Sbjct: 2   AATLATLPAPINQIFPDADLA-------EGIRAVLQKASVTD-VVTQEELESITKLVVAG 53

Query: 378 NMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHN 437
             +  +            + I  L+ LE L++  N +  +     LSNL +LT L +  N
Sbjct: 54  EKVASI------------QGIEYLTNLEYLNLNGNQITDIS---PLSNLVKLTNLYIGTN 98

Query: 438 SLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWD 497
            +              +I  L            L+      EL ++   ISD  P    +
Sbjct: 99  KIT-------------DISALQNLTN-------LR------ELYLNEDNISDISP--LAN 130

Query: 498 LSPNLYYLNLSHNHFTGMLPDLSQ--KFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFK 555
           L   +Y LNL  NH    L  LS           + ++ +  +  + PI           
Sbjct: 131 L-TKMYSLNLGANHNLSDLSPLSNMTGLN----YLTVTESKVKD-VTPI----------- 173

Query: 556 NMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSM 615
                +L+ L          L L+ N +   +   + +   L       N+ +   P + 
Sbjct: 174 ----ANLTDL--------YSLSLNYNQIED-ISPLA-SLTSLHYFTAYVNQITDITPVA- 218

Query: 616 DFNCMML-SLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLS 674
             N   L SL + NN       S + + +QLT L++G N+IS I        L  L +L+
Sbjct: 219 --NMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISDINAV---KDLTKLKMLN 271

Query: 675 LRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRT 734
           + SN       +   +L ++  L L+ N +     + +  LT +T               
Sbjct: 272 VGSNQISDISVLN--NLSQLNSLFLNNNQLGNEDMEVIGGLTNLT--------------- 314

Query: 735 DYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLT 793
                                     ++ LS N +   I  + SL  + S + +   + 
Sbjct: 315 --------------------------TLFLSQNHITD-IRPLASLSKMDSADFANQVIK 346

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  124 bits (313), Expect = 2e-30
 Identities = 94/508 (18%), Positives = 167/508 (32%), Gaps = 120/508 (23%)

Query: 211 VSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSL 270
              + S TE               +             +++++ + +             
Sbjct: 30  AENVKSKTEYYNAWSEWERNAPPGN---------GEQREMAVSRLRD-------CLDRQA 73

Query: 271 VYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTD 330
             L+L++  L   +P+     P  L  L  S N L  +P+  ++L  L     +   L+D
Sbjct: 74  HELELNNLGLS-SLPEL----PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD 128

Query: 331 LLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRF 390
           L P             LE L +++N L   LP++   S LK + + +N L  L       
Sbjct: 129 LPPL------------LEYLGVSNNQLE-KLPELQNSSFLKIIDVDNNSLKKL------- 168

Query: 391 TGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPS 450
                        LE +   +N L+ +     L NL  LT +   +NSL           
Sbjct: 169 -------PDLPPSLEFIAAGNNQLEELPE---LQNLPFLTAIYADNNSL----------- 207

Query: 451 FELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHN 510
                          + P           +      + +       +L P L  +   +N
Sbjct: 208 --------------KKLPDLPL---SLESIVAGNNILEE--LPELQNL-PFLTTIYADNN 247

Query: 511 HFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISD 570
                LPDL          +++  N     +P +P ++T L + +N+FSG       +  
Sbjct: 248 LLK-TLPDLPPSLE----ALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPNL-- 299

Query: 571 EHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNS 630
               YL+ S N +   L +       L  LN++NNK   ++P        +  L    N 
Sbjct: 300 ---YYLNASSNEIR-SLCD---LPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNH 348

Query: 631 FIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLV--VLSLRSNNFHGRVPVQV 688
            + E+P        L  L + +N +            PD+   V  LR N+    VP   
Sbjct: 349 -LAEVPE---LPQNLKQLHVEYNPLR---------EFPDIPESVEDLRMNSHLAEVPELP 395

Query: 689 CHLQRIQVLDLSQNNISGTVPQCLNNLT 716
            +L   + L +  N +    P    ++ 
Sbjct: 396 QNL---KQLHVETNPLR-EFPDIPESVE 419

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  113 bits (286), Expect = 7e-27
 Identities = 105/558 (18%), Positives = 181/558 (32%), Gaps = 125/558 (22%)

Query: 112 IGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDL 171
           +    L       ++    ++P    ++K+      + + +    P   G    +    L
Sbjct: 8   VSNTFLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 172 SFNFDMLSKKLEWL-----------SQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTEL 220
               D L ++   L                LE +  +  +L E  +  Q    L SL   
Sbjct: 66  R---DCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQ---SLKSLLVD 119

Query: 221 QLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWL--FNSSSSLVYLDLSSN 278
                 L  +              L +L +S N +       L    +SS L  +D+ +N
Sbjct: 120 NNNLKALSDLPP-----------LLEYLGVSNNQLEK-----LPELQNSSFLKIIDVDNN 163

Query: 279 KLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLK 338
            L+  +PD     P SL ++   NNQL  +P   +NL  L A+Y D+N+L  L       
Sbjct: 164 SLKK-LPDL----PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPL-- 215

Query: 339 LSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSI 398
                  +LE +   +N+L   LP++     L  ++  +N+L            TL    
Sbjct: 216 -------SLESIVAGNNILE-ELPELQNLPFLTTIYADNNLL-----------KTLPDLP 256

Query: 399 GQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRL 458
             L  L + D     L              LT+LD+S N                     
Sbjct: 257 PSLEALNVRDNYLTDLP--------ELPQSLTFLDVSENIF------------------- 289

Query: 459 GACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPD 518
                  + P  L        L+ S+ EI            P+L  LN+S+N     LP 
Sbjct: 290 ---SGLSELPPNLYY------LNASSNEIRSLCDLP-----PSLEELNVSNNKLI-ELPA 334

Query: 519 LSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDL 578
           L  +       +  S N     +P +P  +  L +  N          +  D      DL
Sbjct: 335 LPPRLE----RLIASFNHLAE-VPELPQNLKQLHVEYNPLR-------EFPDIPESVEDL 382

Query: 579 SDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSS 638
             N    E+P   +N   L  L++  N    + PD  +    +  L + +   +     +
Sbjct: 383 RMNSHLAEVPELPQN---LKQLHVETNPLR-EFPDIPE---SVEDLRMNSERVVDPYEFA 435

Query: 639 VKSFTQLTVLDLGHNKIS 656
            ++  +L      H+   
Sbjct: 436 HETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 85.0 bits (211), Expect = 2e-17
 Identities = 80/485 (16%), Positives = 150/485 (30%), Gaps = 119/485 (24%)

Query: 335 LFLKLSNCSRDTLEILQLNSNMLRGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGT 393
           +F+   N S   L+    +S+ L   +P       S  E           Y   + +   
Sbjct: 1   MFINPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTE----------YYNAWSEWERN 49

Query: 394 LTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFEL 453
                G+  ++ +  +     +            +   L+L++  L              
Sbjct: 50  APPGNGEQREMAVSRLRDCLDR------------QAHELELNNLGL-------------- 83

Query: 454 NIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFT 513
                      P+ P  L+       L  S   ++  +P     L  +L   N +    +
Sbjct: 84  --------SSLPELPPHLE------SLVASCNSLT-ELPELPQSLK-SLLVDNNNLKALS 127

Query: 514 GMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPL--TVTSLILFKNMFSGSLSFLCQISDE 571
            + P L          + +S N  E  +P +     +  + +  N           +   
Sbjct: 128 DLPPLLE--------YLGVSNNQLEK-LPELQNSSFLKIIDVDNNSLKKLPDLPPSL--- 175

Query: 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSF 631
              ++   +N L  ELP    N   LT +   NN    K+PD       + S+   NN  
Sbjct: 176 --EFIAAGNNQLE-ELPELQ-NLPFLTAIYADNNSLK-KLPDLP---LSLESIVAGNNIL 227

Query: 632 IGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHL 691
             E    +++   LT +   +N +       + D  P L  L++R N     +P     L
Sbjct: 228 --EELPELQNLPFLTTIYADNNLLK-----TLPDLPPSLEALNVRDNYLT-DLPELPQSL 279

Query: 692 QRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSE 751
             + V +   + +     +   NL  + A  SSN +                        
Sbjct: 280 TFLDVSENIFSGL----SELPPNLYYLNA--SSNEIRSLC-------------------- 313

Query: 752 YRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDL 811
             +    ++ +++S+N+L  E+P       L  L  S N L   +P     L     L +
Sbjct: 314 --DLPPSLEELNVSNNKLI-ELPA--LPPRLERLIASFNHLAE-VPELPQNLK---QLHV 364

Query: 812 SKNML 816
             N L
Sbjct: 365 EYNPL 369

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 64.6 bits (158), Expect = 5e-11
 Identities = 41/286 (14%), Positives = 67/286 (23%), Gaps = 61/286 (21%)

Query: 110 SLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYL 169
            L  L  L  +    N      +        ++  +   N         +L NL  L  +
Sbjct: 190 ELQNLPFLTAIYADNN-----SLKKLPDLPLSLESIVAGNNILE--ELPELQNLPFLTTI 242

Query: 170 DLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQ-----------VVSQLPSLT 218
               N   L    +    L  L        +L E    L            +    P+L 
Sbjct: 243 YADNNL--LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLY 300

Query: 219 ELQLRGCNLPSVIASSS------------VSFSNSSRSLAHLDLSLNDVSNSVYYWLFNS 266
            L      + S+                 +        L  L  S N ++      +   
Sbjct: 301 YLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAE-----VPEL 355

Query: 267 SSSLVYLDLSSNKLQGPIPD---------------SAFPNPTSLSYLDLSNNQLVSVPKS 311
             +L  L +  N L+   PD                    P +L  L +  N L   P  
Sbjct: 356 PQNLKQLHVEYNPLRE-FPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDI 414

Query: 312 FRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNML 357
                 +  L  +S  + D                LE      +  
Sbjct: 415 ---PESVEDLRMNSERVVDPYEFAHETTDK-----LEDDVFEHHHH 452

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  122 bits (308), Expect = 4e-30
 Identities = 72/327 (22%), Positives = 125/327 (38%), Gaps = 64/327 (19%)

Query: 138 SLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLN 197
           +L N + +   N+         L +   ++ L+L+        ++E +   +F       
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL------QIEEIDTYAF------- 89

Query: 198 QVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSN 257
                         +   ++ +L +    +  +       F N    L  L L  ND+S 
Sbjct: 90  --------------AYAHTIQKLYMGFNAIRYL---PPHVFQN-VPLLTVLVLERNDLS- 130

Query: 258 SVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCR 317
           S+   +F+++  L  L +S+N L+  I D  F   TSL  L LS+N+L  V      +  
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPS 187

Query: 318 LRALYQDSNNLTDLLPNLFLK---LSNCSRDT--------LEILQLNSNMLRGSLPDITL 366
           L       N L+ L   + ++    S+ S +         L IL+L  N L      +  
Sbjct: 188 LFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT-DTAWLLN 246

Query: 367 FSSLKELHLYDNM--------------LDVLYLNNNRFTGTLTKSIGQLSQLELLDVASN 412
           +  L E+ L  N               L+ LY++NNR    L      +  L++LD++ N
Sbjct: 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHN 305

Query: 413 SLKGMITEAHLSNLSRLTYLDLSHNSL 439
            L  +  E +     RL  L L HNS+
Sbjct: 306 HLLHV--ERNQPQFDRLENLYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  119 bits (301), Expect = 3e-29
 Identities = 77/372 (20%), Positives = 125/372 (33%), Gaps = 48/372 (12%)

Query: 108 SSSLIGLQHLNYLNMKYNDFGGKQIPAFI-GSLKNIRHLDLSNAGFTGRVPYQLGNLTSL 166
           ++ L   + +  LN+       ++I  +       I+ L +         P+   N+  L
Sbjct: 62  AALLDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119

Query: 167 QYLDLSFN-FDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGC 225
             L L  N    L + +        L  + ++  NL    D         SL  LQL   
Sbjct: 120 TVLVLERNDLSSLPRGI--FHNTPKLTTLSMSNNNLERIED--DTFQATTSLQNLQLSSN 175

Query: 226 NLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIP 285
            L      + V  S    SL H ++S N +S            ++  LD S N +   + 
Sbjct: 176 RL------THVDLSLIP-SLFHANVSYNLLST------LAIPIAVEELDASHNSINV-VR 221

Query: 286 DSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRD 345
                    L+ L L +N L        N   L  +    N L  ++ + F+K+      
Sbjct: 222 GPVNVE---LTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQR---- 273

Query: 346 TLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLE 405
            LE L +++N L  +L        +  L        VL L++N     + ++  Q  +LE
Sbjct: 274 -LERLYISNNRLV-ALNLY--GQPIPTLK-------VLDLSHNHLL-HVERNQPQFDRLE 321

Query: 406 LLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLG--ACKQ 463
            L +  NS    I    LS    L  L LSHN    N       +     +      CK 
Sbjct: 322 NLYLDHNS----IVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKI 377

Query: 464 GPQFPKWLQTQN 475
             Q    L  + 
Sbjct: 378 DYQLEHGLCCKE 389

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  118 bits (298), Expect = 7e-29
 Identities = 77/445 (17%), Positives = 145/445 (32%), Gaps = 109/445 (24%)

Query: 239 SNSSRSLAHLDLSLNDVSNSVYYWLFNSS-SSLVYLDLSSNKLQGPIPDSAFPNPTSLSY 297
           SN        D+ ++  +  VY+   + + ++   +   ++ ++  +P +   +   +  
Sbjct: 15  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFRQVEL 73

Query: 298 LDLSNNQLVSVPK-SFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNM 356
           L+L++ Q+  +   +F     ++ LY   N +  L P++F  +       L +L L  N 
Sbjct: 74  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL-----LTVLVLERND 128

Query: 357 LRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKG 416
           L  SLP   +F +  +L         L ++NN        +    + L+ L ++SN    
Sbjct: 129 LS-SLPR-GIFHNTPKLT-------TLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--- 176

Query: 417 MITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNK 476
            +T   LS +  L + ++S+N L                               L     
Sbjct: 177 -LTHVDLSLIPSLFHANVSYNLL-----------------------------STLAIPIA 206

Query: 477 FSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANS 536
             ELD S   I+             L  L L HN+ T                       
Sbjct: 207 VEELDASHNSINVVRGPVN----VELTILKLQHNNLT-------------------DTAW 243

Query: 537 FEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQK 596
                                       L          +DLS N L   + +     Q+
Sbjct: 244 LLN----------------------YPGL--------VEVDLSYNELEKIMYHPFVKMQR 273

Query: 597 LTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKIS 656
           L  L ++NN+    +         +  L L +N  +  +  +   F +L  L L HN I 
Sbjct: 274 LERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIV 331

Query: 657 GIIPAWIGDSLPDLVVLSLRSNNFH 681
            +       +   L  L+L  N++ 
Sbjct: 332 TLKL----STHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 92.4 bits (230), Expect = 4e-20
 Identities = 66/423 (15%), Positives = 135/423 (31%), Gaps = 93/423 (21%)

Query: 301 SNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGS 360
              +   +  + +  C          ++     +++    + + +  +I+   ++ +R  
Sbjct: 6   RQPEYKCIDSNLQYDCVFY-----DVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-K 59

Query: 361 LPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITE 420
           LP   L  S +++        +L LN+ +     T +      ++ L +  N+++  +  
Sbjct: 60  LPA-ALLDSFRQVE-------LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPP 110

Query: 421 AHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSEL 480
               N+  LT L L  N L              + +  G     P+    L        L
Sbjct: 111 HVFQNVPLLTVLVLERNDL--------------SSLPRGIFHNTPK----LT------TL 146

Query: 481 DVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFT----GMLPDLSQKFTAYPPEIDLSANS 536
            +S   +     + F     +L  L LS N  T     ++P L           ++S N 
Sbjct: 147 SMSNNNLERIEDDTFQAT-TSLQNLQLSSNRLTHVDLSLIPSLF--------HANVSYNL 197

Query: 537 FEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHF---RYLDLSDNLLSGELPNCSKN 593
                  IP+ V  L    N  +        +          L L  N L+ +      N
Sbjct: 198 LS--TLAIPIAVEELDASHNSIN-------VVRGPVNVELTILKLQHNNLT-DTAWLL-N 246

Query: 594 WQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHN 653
           +  L  ++L+ N+                   +  + F+           +L  L + +N
Sbjct: 247 YPGLVEVDLSYNELE----------------KIMYHPFVK--------MQRLERLYISNN 282

Query: 654 KISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLN 713
           ++   +  +    +P L VL L  N+    V        R++ L L  N+I        +
Sbjct: 283 RLV-ALNLYGQP-IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHH 339

Query: 714 NLT 716
            L 
Sbjct: 340 TLK 342

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 78.9 bits (195), Expect = 1e-15
 Identities = 61/459 (13%), Positives = 132/459 (28%), Gaps = 129/459 (28%)

Query: 359 GSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMI 418
              P    +  +     YD +   ++++              L+  +++   +++++  +
Sbjct: 2   NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KL 60

Query: 419 TEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFS 478
             A L +  ++  L+L+                ++  I   A              +   
Sbjct: 61  PAALLDSFRQVELLNLNDL--------------QIEEIDTYA----------FAYAHTIQ 96

Query: 479 ELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFE 538
           +L +    I    P+ F ++ P L  L L  N  +                  L    F 
Sbjct: 97  KLYMGFNAIRYLPPHVFQNV-PLLTVLVLERNDLS-----------------SLPRGIFH 138

Query: 539 GPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLT 598
                                     L          L +S+N L     +  +    L 
Sbjct: 139 N----------------------TPKL--------TTLSMSNNNLERIEDDTFQATTSLQ 168

Query: 599 VLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGI 658
            L L++N+ +  +  S+  +  +   ++  N       S++     +  LD  HN I+ +
Sbjct: 169 NLQLSSNRLT-HVDLSLIPS--LFHANVSYNLL-----STLAIPIAVEELDASHNSINVV 220

Query: 659 IPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAM 718
                     +L +L L+ NN        + +   +  +DLS N +   +      +  +
Sbjct: 221 RG----PVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274

Query: 719 TANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTS 778
                                                    + + +S+NRL         
Sbjct: 275 -----------------------------------------ERLYISNNRLVALNLYGQP 293

Query: 779 LVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLM 817
           +  L  L+LS N L   +         L +L L  N ++
Sbjct: 294 IPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV 331

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  118 bits (297), Expect = 2e-28
 Identities = 61/241 (25%), Positives = 97/241 (40%), Gaps = 29/241 (12%)

Query: 215 PSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLD 274
            +   L L    +  +      SF +  R L  L LS N +  ++    FN  ++L  L+
Sbjct: 64  TNTRLLNLHENQIQII---KVNSFKHL-RHLEILQLSRNHIR-TIEIGAFNGLANLNTLE 118

Query: 275 LSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRALY-QDSNNLTDLL 332
           L  N+L   IP+ AF   + L  L L NN + S+P  +F  +  LR L   +   L+ + 
Sbjct: 119 LFDNRLTT-IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS 177

Query: 333 PNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNM------------- 379
              F  LSN     L  L L    LR  +P++T    L EL L  N              
Sbjct: 178 EGAFEGLSN-----LRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLM 231

Query: 380 -LDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNS 438
            L  L++  ++       +   L  L  +++A N+L  ++     + L  L  + L HN 
Sbjct: 232 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNP 290

Query: 439 L 439
            
Sbjct: 291 W 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  102 bits (256), Expect = 3e-23
 Identities = 64/249 (25%), Positives = 98/249 (39%), Gaps = 29/249 (11%)

Query: 141 NIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSK-KLEWLSQLSFLEYVRLNQV 199
           N R L+L              +L  L+ L LS N   +   ++   + L+ L  + L   
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN--HIRTIEIGAFNGLANLNTLELFDN 122

Query: 200 NLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLS----LNDV 255
            L    +       L  L EL LR   + S+    S +F+    SL  LDL     L+ +
Sbjct: 123 RLTTIPN--GAFVYLSKLKELWLRNNPIESI---PSYAFNRIP-SLRRLDLGELKRLSYI 176

Query: 256 SNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRN 314
           S       F   S+L YL+L+   L+  IP         L  LDLS N L ++   SF+ 
Sbjct: 177 SEGA----FEGLSNLRYLNLAMCNLRE-IP--NLTPLIKLDELDLSGNHLSAIRPGSFQG 229

Query: 315 LCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITL--FSSLKE 372
           L  L+ L+   + +  +  N F  L +     L  + L  N L   LP         L+ 
Sbjct: 230 LMHLQKLWMIQSQIQVIERNAFDNLQS-----LVEINLAHNNLT-LLPHDLFTPLHHLER 283

Query: 373 LHLYDNMLD 381
           +HL+ N  +
Sbjct: 284 IHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.9 bits (205), Expect = 8e-17
 Identities = 70/416 (16%), Positives = 117/416 (28%), Gaps = 166/416 (39%)

Query: 267 SSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVP-KSFRNLCRLRALYQDS 325
           S+    +      L+  +PD      T+   L+L  NQ+  +   SF++L  L  L    
Sbjct: 42  SNQFSKVICVRKNLRE-VPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSR 97

Query: 326 NNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYL 385
           N++  +    F  L+N                            L  L L+DN L    +
Sbjct: 98  NHIRTIEIGAFNGLAN----------------------------LNTLELFDNRLT--TI 127

Query: 386 NNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGS 445
            N  F          LS+L+ L + +N ++  I     + +  L  LDL           
Sbjct: 128 PNGAFVY--------LSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGEL-------- 170

Query: 446 GWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYL 505
                                         + S +              F  L  NL YL
Sbjct: 171 -----------------------------KRLSYIS----------EGAFEGL-SNLRYL 190

Query: 506 NLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFL 565
           NL+  +    +P+L+                                         L  L
Sbjct: 191 NLAMCNLR-EIPNLT----------------------------------------PLIKL 209

Query: 566 CQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLH 625
                     LDLS N LS   P   +    L  L +  ++                   
Sbjct: 210 --------DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ----------------V 245

Query: 626 LRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFH 681
           +  N+F             L  ++L HN ++ ++P  +   L  L  + L  N ++
Sbjct: 246 IERNAFDN--------LQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 68.2 bits (167), Expect = 3e-12
 Identities = 60/286 (20%), Positives = 93/286 (32%), Gaps = 62/286 (21%)

Query: 541 IPP-IPLTVTSLILFKNMFS----GSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQ 595
           +P  I      L L +N        S   L  +       L LS N +            
Sbjct: 58  VPDGISTNTRLLNLHENQIQIIKVNSFKHLRHL-----EILQLSRNHIRTIEIGAFNGLA 112

Query: 596 KLTVLNLANNKFSGKIPDSMDFNCMML-SLHLRNNSFIGELPSSV-KSFTQLTVLDLGH- 652
            L  L L +N+ +  IP+        L  L LRNN  I  +PS        L  LDLG  
Sbjct: 113 NLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGEL 170

Query: 653 NKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCL 712
            ++S I      + L +L  L+L   N    +P  +  L ++  LDLS N++S   P   
Sbjct: 171 KRLSYI-SEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSF 227

Query: 713 NNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGE 772
             L  +                                         + + +  +++   
Sbjct: 228 QGLMHL-----------------------------------------QKLWMIQSQI-QV 245

Query: 773 IPEVT--SLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
           I      +L  L+ +NL+ N+LT         L  L  + L  N  
Sbjct: 246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.8 bits (158), Expect = 5e-11
 Identities = 52/237 (21%), Positives = 85/237 (35%), Gaps = 38/237 (16%)

Query: 588 PNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSV-KSFTQLT 646
             CS + Q   V          ++PD +  N  +L+LH  N   I  +  +  K    L 
Sbjct: 37  SVCSCSNQFSKV-ICVRKNLR-EVPDGISTNTRLLNLH-ENQ--IQIIKVNSFKHLRHLE 91

Query: 647 VLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV-CHLQRIQVLDLSQNNIS 705
           +L L  N I   I     + L +L  L L  N     +P     +L +++ L L  N I 
Sbjct: 92  ILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE 149

Query: 706 GTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYN------DHALLVWKRKDSEYRNTLGLV 759
                  N + ++             L            + A              L  +
Sbjct: 150 SIPSYAFNRIPSLRR-----------LDLGELKRLSYISEGAF-----------EGLSNL 187

Query: 760 KSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
           + ++L+   L  EIP +T L+ L  L+LS N L+   P    GL  L  L + ++ +
Sbjct: 188 RYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.0 bits (156), Expect = 7e-11
 Identities = 50/225 (22%), Positives = 70/225 (31%), Gaps = 33/225 (14%)

Query: 497 DLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPP--EIDLSANSFEGPIPPIPLTVTSLILF 554
            +S N   LNL  N    +  +    F        + LS N     I  I          
Sbjct: 61  GISTNTRLLNLHENQIQIIKVNS---FKHLRHLEILQLSRNH----IRTIE--------- 104

Query: 555 KNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDS 614
              F+G L+ L          L+L DN L+           KL  L L NN     IP  
Sbjct: 105 IGAFNG-LANL--------NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSY 154

Query: 615 MDFNCMML-SLHLRNNSFIGELPSSV-KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVV 672
                  L  L L     +  +     +  + L  L+L    +   IP      L  L  
Sbjct: 155 AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPNL--TPLIKLDE 211

Query: 673 LSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTA 717
           L L  N+     P     L  +Q L + Q+ I        +NL +
Sbjct: 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  115 bits (289), Expect = 3e-28
 Identities = 72/301 (23%), Positives = 111/301 (36%), Gaps = 54/301 (17%)

Query: 143 RHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLG 202
             +  ++ G T  VP  +   +S   L+L  N      KL+ L    F            
Sbjct: 10  TEIRCNSKGLT-SVPTGI--PSSATRLELESN------KLQSLPHGVF------------ 48

Query: 203 EATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYW 262
                     +L  LT+L L    L S     S S   ++ SL +LDLS N V       
Sbjct: 49  ---------DKLTQLTKLSLSSNGL-SFKGCCSQSDFGTT-SLKYLDLSFNGVITMSS-- 95

Query: 263 LFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRAL 321
            F     L +LD   + L+     S F +  +L YLD+S+          F  L  L  L
Sbjct: 96  NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155

Query: 322 YQDSNN-LTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLF--SSLKELHLYDN 378
               N+   + LP++F +L N     L  L L+   L   L        SSL+ L++  N
Sbjct: 156 KMAGNSFQENFLPDIFTELRN-----LTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHN 209

Query: 379 MLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNS 438
                 L+   +          L+ L++LD + N +     +      S L +L+L+ N 
Sbjct: 210 NF--FSLDTFPYKC--------LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259

Query: 439 L 439
            
Sbjct: 260 F 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  113 bits (286), Expect = 6e-28
 Identities = 59/257 (22%), Positives = 96/257 (37%), Gaps = 20/257 (7%)

Query: 130 KQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFN-FDMLSKKLEWLSQL 188
             +P  I    +   L+L +             LT L  L LS N         +     
Sbjct: 20  TSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77

Query: 189 SFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHL 248
           + L+Y+ L+   +   +        L  L  L  +  NL  +   S   F +  R+L +L
Sbjct: 78  TSLKYLDLSFNGVITMSSNF---LGLEQLEHLDFQHSNLKQMSEFSV--FLSL-RNLIYL 131

Query: 249 DLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSV 308
           D+S        +  +FN  SSL  L ++ N  Q       F    +L++LDLS  QL  +
Sbjct: 132 DISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190

Query: 309 PK-SFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDIT-- 365
              +F +L  L+ L    NN   L    +  L++     L++L  + N +  +       
Sbjct: 191 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS-----LQVLDYSLNHIM-TSKKQELQ 244

Query: 366 -LFSSLKELHLYDNMLD 381
              SSL  L+L  N   
Sbjct: 245 HFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  109 bits (275), Expect = 2e-26
 Identities = 66/277 (23%), Positives = 108/277 (38%), Gaps = 43/277 (15%)

Query: 239 SNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQ-GPIPDSAFPNPTSLSY 297
           +    S   L+L  N +  S+ + +F+  + L  L LSSN L        +    TSL Y
Sbjct: 24  TGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82

Query: 298 LDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLP-NLFLKLSNCSRDTLEILQLNSNM 356
           LDLS N ++++  +F  L +L  L    +NL  +   ++FL L N     L  L ++   
Sbjct: 83  LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN-----LIYLDISHTH 137

Query: 357 LRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSI-GQLSQLELLDVASNSLK 415
            R    +  +F+ L  L        VL +  N F       I  +L  L  LD++   L+
Sbjct: 138 TR-VAFN-GIFNGLSSLE-------VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

Query: 416 GMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQN 475
             ++    ++LS L  L++SHN+                 +               +  N
Sbjct: 189 -QLSPTAFNSLSSLQVLNMSHNN--------------FFSLDTFP----------YKCLN 223

Query: 476 KFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHF 512
               LD S   I  +          +L +LNL+ N F
Sbjct: 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 48/252 (19%), Positives = 87/252 (34%), Gaps = 62/252 (24%)

Query: 108 SSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQ 167
           S S  G   L YL++ +N                +  +    + F G        L  L+
Sbjct: 71  SQSDFGTTSLKYLDLSFN---------------GVITMS---SNFLG--------LEQLE 104

Query: 168 YLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNL 227
           +LD   +       L+ +S+ S                        L +L  L +   + 
Sbjct: 105 HLDFQHS------NLKQMSEFSVF--------------------LSLRNLIYLDISHTHT 138

Query: 228 PSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDS 287
                  +  F+  S SL  L ++ N    +    +F    +L +LDLS  +L+  +  +
Sbjct: 139 RVA---FNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPT 193

Query: 288 AFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDT 346
           AF + +SL  L++S+N   S+    ++ L  L+ L    N++                 +
Sbjct: 194 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP----SS 249

Query: 347 LEILQLNSNMLR 358
           L  L L  N   
Sbjct: 250 LAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 76.2 bits (188), Expect = 3e-15
 Identities = 49/249 (19%), Positives = 80/249 (32%), Gaps = 50/249 (20%)

Query: 574 RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCM--MLSLHLRNNSF 631
             L+L  N L            +LT L+L++N  S K   S        +  L L  N  
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG- 89

Query: 632 IGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVC-H 690
           +  + S+     QL  LD  H+ +  +    +  SL +L+ L +   +        +   
Sbjct: 90  VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNG 148

Query: 691 LQRIQVLDLSQNNISGTV-PQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKD 749
           L  ++VL ++ N+      P     L  +T                              
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLT------------------------------ 178

Query: 750 SEYRNTLGLVKSIDLSSNRLYGEIPEVT--SLVGLISLNLSKNSLTGPIPSKIGGLTLLN 807
                       +DLS  +L  ++      SL  L  LN+S N+           L  L 
Sbjct: 179 -----------FLDLSQCQL-EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226

Query: 808 SLDLSKNML 816
            LD S N +
Sbjct: 227 VLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 68/388 (17%), Positives = 105/388 (27%), Gaps = 134/388 (34%)

Query: 294 SLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLN 353
           S + +  ++  L SVP           L  +SN L  L   +F KL+             
Sbjct: 8   SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQ------------ 53

Query: 354 SNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNS 413
                           L +L L  N L      +    G         + L+ LD++ N 
Sbjct: 54  ----------------LTKLSLSSNGLSFKGCCSQSDFG--------TTSLKYLDLSFNG 89

Query: 414 LKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQT 473
           +  M   ++   L +L +LD  H++L               +               L  
Sbjct: 90  VITM--SSNFLGLEQLEHLDFQHSNL-------------KQMSEFSVFLSLRN----LI- 129

Query: 474 QNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLS 533
                 LD+S           F  L  +L  L ++ N F                     
Sbjct: 130 -----YLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQENFLP--------------- 168

Query: 534 ANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKN 593
                                 ++F+  L  L         +LDLS   L    P    +
Sbjct: 169 ----------------------DIFTE-LRNL--------TFLDLSQCQLEQLSPTAFNS 197

Query: 594 WQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHN 653
              L VLN+++N F                  L    +        K    L VLD   N
Sbjct: 198 LSSLQVLNMSHNNFF----------------SLDTFPY--------KCLNSLQVLDYSLN 233

Query: 654 KISGIIPAWIGDSLPDLVVLSLRSNNFH 681
            I       +      L  L+L  N+F 
Sbjct: 234 HIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 56/303 (18%), Positives = 98/303 (32%), Gaps = 66/303 (21%)

Query: 526 YPPEIDLSANSFEGPIPP-IPLTVTSLILFKNMFS----GSLSFLCQISDEHFRYLDLSD 580
              EI  ++      +P  IP + T L L  N       G    L Q+       L LS 
Sbjct: 8   SGTEIRCNSKGLTS-VPTGIPSSATRLELESNKLQSLPHGVFDKLTQL-----TKLSLSS 61

Query: 581 NLLS--GELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSS 638
           N LS  G           L  L+L+ N     +  +      +  L  ++++ + ++   
Sbjct: 62  NGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN-LKQMSEF 119

Query: 639 V--KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV-CHLQRIQ 695
               S   L  LD+ H     +    I + L  L VL +  N+F       +   L+ + 
Sbjct: 120 SVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178

Query: 696 VLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNT 755
            LDLSQ  +    P   N+L+++                                     
Sbjct: 179 FLDLSQCQLEQLSPTAFNSLSSL------------------------------------- 201

Query: 756 LGLVKSIDLSSNRLYGEIPEVT--SLVGLISLNLSKNSLTGPIPSKI--GGLTLLNSLDL 811
               + +++S N     +       L  L  L+ S N +      +      + L  L+L
Sbjct: 202 ----QVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMT-SKKQELQHFPSSLAFLNL 255

Query: 812 SKN 814
           ++N
Sbjct: 256 TQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 69.3 bits (170), Expect = 7e-13
 Identities = 38/229 (16%), Positives = 76/229 (33%), Gaps = 33/229 (14%)

Query: 497 DLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPP--EIDLSANSFEGPIPPIPLTVTSLILF 554
            +  +   L L  N    +   +   F       ++ LS+N                + F
Sbjct: 25  GIPSSATRLELESNKLQSLPHGV---FDKLTQLTKLSLSSNG---------------LSF 66

Query: 555 KNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDS 614
           K   S S      +     +YLDLS N +   + +     ++L  L+  ++    ++ + 
Sbjct: 67  KGCCSQSDFGTTSL-----KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEF 119

Query: 615 MDFNCM--MLSLHLRNNSFIGELPSSV-KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLV 671
             F  +  ++ L + +        + +    + L VL +  N         I   L +L 
Sbjct: 120 SVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178

Query: 672 VLSLRSNNFHGRVPVQV-CHLQRIQVLDLSQNNISGTVPQCLNNLTAMT 719
            L L       ++       L  +QVL++S NN           L ++ 
Sbjct: 179 FLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.7 bits (114), Expect = 9e-06
 Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 54/202 (26%)

Query: 619 CMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSN 678
           C    +   +      +P+ +   +  T L+L  NK+   +P  + D L  L  LSL SN
Sbjct: 7   CSGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSN 62

Query: 679 N--FHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDY 736
              F G           ++ LDLS N +  T+      L  +                  
Sbjct: 63  GLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE----------------- 104

Query: 737 YNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEV---TSLVGLISLNLSKNSLT 793
                                    +D   + L  ++ E     SL  LI L++S     
Sbjct: 105 ------------------------HLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTR 139

Query: 794 GPIPSKI-GGLTLLNSLDLSKN 814
               + I  GL+ L  L ++ N
Sbjct: 140 V-AFNGIFNGLSSLEVLKMAGN 160

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  118 bits (296), Expect = 4e-28
 Identities = 59/424 (13%), Positives = 132/424 (31%), Gaps = 43/424 (10%)

Query: 132 IPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFN-FDMLSKKLEWLSQLSF 190
           I     +    +   ++++     +     +  +++ LDLS N    +S     L+  + 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISA--ADLAPFTK 59

Query: 191 LEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDL 250
           LE + L+   L E       +  L +L  L L    +  ++            S+  L  
Sbjct: 60  LELLNLSSNVLYE----TLDLESLSTLRTLDLNNNYVQELLVGP---------SIETLHA 106

Query: 251 SLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK 310
           +    +N++     +       + L++NK+   + D      + + YLDL  N++ +V  
Sbjct: 107 A----NNNISRVSCSRGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 311 S--FRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFS 368
           +    +   L  L    N + D+   +           L+ L L+SN L    P+    +
Sbjct: 162 AELAASSDTLEHLNLQYNFIYDVKGQVVFA-------KLKTLDLSSNKLAFMGPEFQSAA 214

Query: 369 SLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSR 428
            +  + L +N L             + K++     LE  D+  N           S   R
Sbjct: 215 GVTWISLRNNKLV-----------LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 429 LTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGP-QFPKWLQTQNKFSELDVSAAEI 487
           +  +       +            L       C+  P  F   L    +     +S    
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGS 323

Query: 488 SDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLT 547
                    +       ++     +  ++  ++ +  A    ++    + +  +      
Sbjct: 324 ETERLECERENQARQREIDALKEQYRTVIDQVTLRKQA-KITLEQKKKALDEQVSNGRRA 382

Query: 548 VTSL 551
              L
Sbjct: 383 HAEL 386

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  116 bits (293), Expect = 1e-27
 Identities = 65/462 (14%), Positives = 149/462 (32%), Gaps = 40/462 (8%)

Query: 263 LFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSV-PKSFRNLCRLRAL 321
           +  + +      ++ + L+     S   +  ++  LDLS N L  +         +L  L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 322 YQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDN--- 378
              SN L + L      LS      L  L LN+N ++    ++ +  S++ LH  +N   
Sbjct: 64  NLSSNVLYETLD--LESLST-----LRTLDLNNNYVQ----ELLVGPSIETLHAANNNIS 112

Query: 379 --------MLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLT 430
                       +YL NN+ T       G  S+++ LD+  N +  +      ++   L 
Sbjct: 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 431 YLDLSHNSL-ILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISD 489
           +L+L +N +  +     +    +L  + L +  +        Q+    + + +   ++  
Sbjct: 173 HLNLQYNFIYDVKGQVVFA---KLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLV- 227

Query: 490 TVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVT 549
            +         NL + +L  N F                 +                TV 
Sbjct: 228 LIEKALRFS-QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 550 SL-----ILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLAN 604
           +L        +++ +     L  +  +    L    +     L    +N  +   ++   
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE-RLECERENQARQREIDALK 345

Query: 605 NKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIG 664
            ++   I          ++L  +  +   ++ +  ++  +L         +  I      
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQ--QAVGQIELQHAT 403

Query: 665 DSLPDLVVLSLRSNNF-HGRVPVQVCHLQRIQVLDLSQNNIS 705
           +    L +L      +    V  Q      I+  D+ Q+  +
Sbjct: 404 EEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  114 bits (288), Expect = 4e-27
 Identities = 64/424 (15%), Positives = 124/424 (29%), Gaps = 61/424 (14%)

Query: 114 LQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSF 173
                   +  +            S  N++ LDLS    +      L   T L+ L+LS 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLR-QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 174 NFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIAS 233
           N  +L +    L  LS L  + LN  N       +Q +   PS+  L     N+  V  S
Sbjct: 68  N--VLYE-TLDLESLSTLRTLDLNN-NY------VQELLVGPSIETLHAANNNISRVSCS 117

Query: 234 SSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPT 293
                    +   ++ L+ N ++  +        S + YLDL  N++          +  
Sbjct: 118 RG-------QGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 294 SLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLN 353
           +L +L+L  N +  V        +L+ L   SN L   +   F   +      +  + L 
Sbjct: 170 TLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAG-----VTWISLR 222

Query: 354 SNMLRGSLPDITLFSSLKELHLYDNMLD-------------VLYLNNNRFTGTLTKSIGQ 400
           +N L      +    +L+   L  N                V  +          ++  +
Sbjct: 223 NNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282

Query: 401 LSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGA 460
            +   L    +   +  +       L  L   + +  S   +                  
Sbjct: 283 CTVPTLGHYGAYCCE-DLPAPFADRLIALKRKEHALLSGQGS------------------ 323

Query: 461 CKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLS 520
             +  +     + Q +  E+D    +   TV +           L          + +  
Sbjct: 324 --ETERLECERENQARQREIDALKEQYR-TVIDQVTLRKQAKITLEQKKKALDEQVSNGR 380

Query: 521 QKFT 524
           +   
Sbjct: 381 RAHA 384

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 99.2 bits (247), Expect = 7e-22
 Identities = 62/509 (12%), Positives = 142/509 (27%), Gaps = 116/509 (22%)

Query: 307 SVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITL 366
           ++ +  +N  R +      ++L   L +L     N     ++ L L+ N L         
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWN-----VKELDLSGNPLSQISAA--D 53

Query: 367 FSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNL 426
            +   +L        +L L++N    TL   +  LS L  LD+ +N ++       L   
Sbjct: 54  LAPFTKLE-------LLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQ------ELLVG 98

Query: 427 SRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAE 486
             +  L  ++N+              ++ +     +         +       + ++  +
Sbjct: 99  PSIETLHAANNN--------------ISRVSCSRGQG-------KK------NIYLANNK 131

Query: 487 ISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPL 546
           I+             + YL+L  N                                    
Sbjct: 132 ITMLRDLDEGCR-SRVQYLDLKLNEIDT-------------------------------- 158

Query: 547 TVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNK 606
                 +     + S   L         +L+L  N +  ++      + KL  L+L++NK
Sbjct: 159 ------VNFAELAASSDTL--------EHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNK 202

Query: 607 FSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDS 666
            +  +         +  + LRNN  +  +  +++    L   DL  N             
Sbjct: 203 LA-FMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 667 LPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNA 726
              +  ++ ++         + C +    +                + L A+   + +  
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTV--PTLGHYGAYCCEDLPAPFADRLIALKRKEHALL 318

Query: 727 MIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEV-TSLVGLISL 785
                         +       + E +      + ID    +    I +V       I+L
Sbjct: 319 ----------SGQGSETERLECERENQARQ---REIDALKEQYRTVIDQVTLRKQAKITL 365

Query: 786 NLSKNSLTGPIPSKIGGLTLLNSLDLSKN 814
              K +L   + +       L+       
Sbjct: 366 EQKKKALDEQVSNGRRAHAELDGTLQQAV 394

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 98.0 bits (244), Expect = 1e-21
 Identities = 61/462 (13%), Positives = 133/462 (28%), Gaps = 104/462 (22%)

Query: 369 SLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSR 428
           ++ E+    N   +  + ++     L         ++ LD++ N L  +     L+  ++
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTK 59

Query: 429 LTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEIS 488
           L  L+LS N L                                              E  
Sbjct: 60  LELLNLSSNVL---------------------------------------------YETL 74

Query: 489 DTVPNWFWDLSPNLYYLNLSHNHFT--GMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPL 546
           D        LS  L  L+L++N+     + P +          +  + N+         +
Sbjct: 75  D-----LESLS-TLRTLDLNNNYVQELLVGPSIE--------TLHAANNN---------I 111

Query: 547 TVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNK 606
           +  S    +                  + + L++N ++           ++  L+L  N+
Sbjct: 112 SRVSCSRGQGK----------------KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155

Query: 607 FSGKIPDSMDFNCMML-SLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGD 665
                   +  +   L  L+L+ N  I ++   V  F +L  LDL  NK++ + P +   
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQV-VFAKLKTLDLSSNKLAFMGPEF--Q 211

Query: 666 SLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQC----LNNLTAMTAN 721
           S   +  +SLR+N     +   +   Q ++  DL  N       +        +  +   
Sbjct: 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

Query: 722 KSSN--AMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKS-----IDLSSNRLYGEIP 774
                               +     +   + + + L  +K      +    +       
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLEC 330

Query: 775 EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
           E  +      ++  K      I           +L+  K  L
Sbjct: 331 ERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKAL 372

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 92.2 bits (229), Expect = 9e-20
 Identities = 59/545 (10%), Positives = 141/545 (25%), Gaps = 142/545 (26%)

Query: 289 FPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTL 347
             N        ++++ L     S  ++   ++ L    N L+ +        +      L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK-----L 60

Query: 348 EILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELL 407
           E+L L+SN+L     D+   S+L+ L L +N +                           
Sbjct: 61  ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYV--------------------------- 92

Query: 408 DVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQF 467
                          L     +  L  ++N++              + +     +     
Sbjct: 93  -------------QELLVGPSIETLHAANNNI--------------SRVSCSRGQG---- 121

Query: 468 PKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYP 527
               +       + ++  +I+             + YL+L  N                 
Sbjct: 122 ---KK------NIYLANNKITMLRDLDEGCR-SRVQYLDLKLNEIDT------------- 158

Query: 528 PEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGEL 587
                                    +     + S   L         +L+L  N +  ++
Sbjct: 159 -------------------------VNFAELAASSDTL--------EHLNLQYNFIY-DV 184

Query: 588 PNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTV 647
                 + KL  L+L++NK +  +         +  + LRNN  +  +  +++    L  
Sbjct: 185 KGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEH 241

Query: 648 LDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGT 707
            DL  N                +  ++ ++         + C +    +           
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV--PTLGHYGAYCCEDL 299

Query: 708 VPQCLNNLTAMTANKSSNAMIRY----PLRTDYYNDHALLVWKRKDSEYRN-------TL 756
                + L A+   + +    +      L  +  N            +YR          
Sbjct: 300 PAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRK 359

Query: 757 GLVKSIDLSSNRLYGEIPEV----TSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLS 812
               +++     L  ++         L G +   + +  L      +     L   +   
Sbjct: 360 QAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRY 419

Query: 813 KNMLM 817
           + M +
Sbjct: 420 EEMYV 424

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 90.7 bits (225), Expect = 3e-19
 Identities = 43/354 (12%), Positives = 97/354 (27%), Gaps = 38/354 (10%)

Query: 103 LRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGN 162
           L  N    L+    +  L+   N+    ++       +  +++ L+N   T       G 
Sbjct: 87  LNNNYVQELLVGPSIETLHAANNNI--SRVSC--SRGQGKKNIYLANNKITMLRDLDEGC 142

Query: 163 LTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQL 222
            + +QYLDL  N        E  +    LE++ L    + +    ++       L  L L
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD----VKGQVVFAKLKTLDL 198

Query: 223 RGCNLPSVIASSSVSFSNSSRSLAHLDLS---LNDVSNSVYYWLFNSSSSLVYLDLSSNK 279
               L  +       F +++  +  + L    L  +  +        S +L + DL  N 
Sbjct: 199 SSNKLAFM----GPEFQSAA-GVTWISLRNNKLVLIEKA-----LRFSQNLEHFDLRGNG 248

Query: 280 LQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKL 339
                    F     +  +     + ++  ++          +  +    DL      +L
Sbjct: 249 FHCGTLRDFFSKNQRVQTVAKQTVKKLT-GQNEEECTVPTLGHYGAYCCEDLPAPFADRL 307

Query: 340 SNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDN--------------MLDVLYL 385
               R    +L    +       +    +  +E+                       L  
Sbjct: 308 IALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQ 367

Query: 386 NNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
                   ++      ++L+     +     +  +      S L  L       
Sbjct: 368 KKKALDEQVSNGRRAHAELDGTLQQAVGQIEL--QHATEEQSPLQLLRAIVKRY 419

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 81.8 bits (202), Expect = 2e-16
 Identities = 43/362 (11%), Positives = 93/362 (25%), Gaps = 36/362 (9%)

Query: 108 SSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTG------------- 154
                    + YL++K N+           S   + HL+L                    
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTL 196

Query: 155 --------RVPYQLGNLTSLQYLDLSFN-FDMLSKKLEWLSQLSFLEYVRLNQVNLGEAT 205
                    +  +  +   + ++ L  N   ++ K L +   L     +R N  + G   
Sbjct: 197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHF-DLRGNGFHCGTLR 255

Query: 206 DWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFN 265
           D+     ++ ++             +   +           +      D+       L  
Sbjct: 256 DFFSKNQRVQTVA------KQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIA 309

Query: 266 -SSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRALYQ 323
                   L    ++ +  +      N      +D    Q  +V             L Q
Sbjct: 310 LKRKEHALLSGQGSETER-LECERE-NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQ 367

Query: 324 DSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELH-LYDNMLDV 382
               L + + N     +       + +      L+ +  + +    L+ +   Y+ M   
Sbjct: 368 KKKALDEQVSNGRRAHAELDGTLQQAVGQIE--LQHATEEQSPLQLLRAIVKRYEEMYVE 425

Query: 383 LYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILN 442
                N           + +QL   +     L G    A  S  + L  L +   +L   
Sbjct: 426 QQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLASQ 485

Query: 443 FG 444
            G
Sbjct: 486 LG 487

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  117 bits (295), Expect = 5e-28
 Identities = 58/241 (24%), Positives = 95/241 (39%), Gaps = 29/241 (12%)

Query: 215 PSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLD 274
            +   L L   N+  +    + +F +    L  L L  N +   +    FN  +SL  L+
Sbjct: 75  SNTRYLNLMENNIQMI---QADTFRHL-HHLEVLQLGRNSIR-QIEVGAFNGLASLNTLE 129

Query: 275 LSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRALY-QDSNNLTDLL 332
           L  N L   IP  AF   + L  L L NN + S+P  +F  +  L  L   +   L  + 
Sbjct: 130 LFDNWLTV-IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188

Query: 333 PNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNM------------- 379
              F  L N     L+ L L    ++  +P++T    L+EL +  N              
Sbjct: 189 EGAFEGLFN-----LKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLS 242

Query: 380 -LDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNS 438
            L  L++ N++ +     +   L+ L  L++A N+L   +     + L  L  L L HN 
Sbjct: 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNP 301

Query: 439 L 439
            
Sbjct: 302 W 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  102 bits (256), Expect = 4e-23
 Identities = 61/254 (24%), Positives = 97/254 (38%), Gaps = 39/254 (15%)

Query: 141 NIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVN 200
           N R+L+L              +L  L+ L L  N       +  +   +F     LN + 
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN------SIRQIEVGAFNGLASLNTLE 129

Query: 201 LGE------ATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLS--- 251
           L +       +   +    L  L EL LR   + S+    S +F+    SL  LDL    
Sbjct: 130 LFDNWLTVIPSGAFE---YLSKLRELWLRNNPIESI---PSYAFNRV-PSLMRLDLGELK 182

Query: 252 -LNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK 310
            L  +S       F    +L YL+L    ++  +P+        L  L++S N    +  
Sbjct: 183 KLEYISEGA----FEGLFNLKYLNLGMCNIKD-MPN--LTPLVGLEELEMSGNHFPEIRP 235

Query: 311 -SFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITL--F 367
            SF  L  L+ L+  ++ ++ +  N F  L++     L  L L  N L  SLP       
Sbjct: 236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS-----LVELNLAHNNLS-SLPHDLFTPL 289

Query: 368 SSLKELHLYDNMLD 381
             L ELHL+ N  +
Sbjct: 290 RYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.3 bits (227), Expect = 1e-19
 Identities = 63/340 (18%), Positives = 114/340 (33%), Gaps = 93/340 (27%)

Query: 267 SSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVP-KSFRNLCRLRALYQDS 325
           S+    +  +   L   +P      P++  YL+L  N +  +   +FR+L  L  L    
Sbjct: 53  SNQFSKVVCTRRGLSE-VPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR 108

Query: 326 NNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYL 385
           N++  +    F  L++     L  L+L  N L   +P    F  L +L         L+L
Sbjct: 109 NSIRQIEVGAFNGLAS-----LNTLELFDNWLT-VIPS-GAFEYLSKLR-------ELWL 154

Query: 386 NNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGS 445
            NN      + +  ++  L  LD+        I+E     L  L YL+L   ++      
Sbjct: 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD---- 210

Query: 446 GWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYL 505
             +P+    ++ L                    EL++S     +  P  F  L  +L  L
Sbjct: 211 --MPNLT-PLVGL-------------------EELEMSGNHFPEIRPGSFHGL-SSLKKL 247

Query: 506 NLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFL 565
            + ++  +                  +  N+F+G                      L+ L
Sbjct: 248 WVMNSQVS-----------------LIERNAFDG----------------------LASL 268

Query: 566 CQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANN 605
                     L+L+ N LS    +     + L  L+L +N
Sbjct: 269 --------VELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 69.8 bits (171), Expect = 1e-12
 Identities = 54/196 (27%), Positives = 78/196 (39%), Gaps = 15/196 (7%)

Query: 113 GLQHLNYLNMKYNDFGGKQIP--AFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLD 170
           GL  LN L +  N      IP  AF   L  +R L L N        Y    + SL  LD
Sbjct: 121 GLASLNTLELFDNWL--TVIPSGAFEY-LSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177

Query: 171 LSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSV 230
           L     +          L  L+Y+ L   N+ +    +  ++ L  L EL++ G + P +
Sbjct: 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD----MPNLTPLVGLEELEMSGNHFPEI 233

Query: 231 IASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFP 290
              S   F   S SL  L +  + VS  +    F+  +SLV L+L+ N L   +P   F 
Sbjct: 234 RPGS---FHGLS-SLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSS-LPHDLFT 287

Query: 291 NPTSLSYLDLSNNQLV 306
               L  L L +N   
Sbjct: 288 PLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.8 bits (166), Expect = 5e-12
 Identities = 59/302 (19%), Positives = 95/302 (31%), Gaps = 67/302 (22%)

Query: 527 PPEIDLSANSFEGPIPP-IPLTVTSLILFKNMFSGSLSFLCQISDEHF------RYLDLS 579
             ++  +       +P  IP     L L +N        +  I  + F        L L 
Sbjct: 56  FSKVVCTRRGLSE-VPQGIPSNTRYLNLMEN-------NIQMIQADTFRHLHHLEVLQLG 107

Query: 580 DNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMML-SLHLRNNSFIGELPSS 638
            N +             L  L L +N  +  IP         L  L LRNN  I  +PS 
Sbjct: 108 RNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNP-IESIPSY 165

Query: 639 V-KSFTQLTVLDLGH-NKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQV 696
                  L  LDLG   K+  I      + L +L  L+L   N    +P  +  L  ++ 
Sbjct: 166 AFNRVPSLMRLDLGELKKLEYI-SEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEE 222

Query: 697 LDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTL 756
           L++S N+     P   + L+++                                      
Sbjct: 223 LEMSGNHFPEIRPGSFHGLSSL-------------------------------------- 244

Query: 757 GLVKSIDLSSNRLYGEIPEVT--SLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKN 814
              K + + ++++   I       L  L+ LNL+ N+L+         L  L  L L  N
Sbjct: 245 ---KKLWVMNSQV-SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

Query: 815 ML 816
             
Sbjct: 301 PW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.5 bits (165), Expect = 8e-12
 Identities = 51/250 (20%), Positives = 91/250 (36%), Gaps = 54/250 (21%)

Query: 574 RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCM--MLSLHLRNNSF 631
           RYL+L +N +     +  ++   L VL L  N    +I     FN +  + +L L +N  
Sbjct: 78  RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGA-FNGLASLNTLELFDNW- 134

Query: 632 IGELPSSV-KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV-C 689
           +  +PS   +  ++L  L L +N I   IP++  + +P L+ L L        +      
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193

Query: 690 HLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKD 749
            L  ++ L+L   NI   +P  L  L                                  
Sbjct: 194 GLFNLKYLNLGMCNIK-DMPN-LTPLVG-------------------------------- 219

Query: 750 SEYRNTLGLVKSIDLSSNRLYGEIPEVT--SLVGLISLNLSKNSLTGPIPSKIGGLTLLN 807
                    ++ +++S N    EI   +   L  L  L +  + ++    +   GL  L 
Sbjct: 220 ---------LEELEMSGNHF-PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269

Query: 808 SLDLSKNMLM 817
            L+L+ N L 
Sbjct: 270 ELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 51/237 (21%), Positives = 81/237 (34%), Gaps = 38/237 (16%)

Query: 588 PNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSV-KSFTQLT 646
             CS + Q   V        S ++P  +  N   L+L   NN  I  + +   +    L 
Sbjct: 48  SVCSCSNQFSKV-VCTRRGLS-EVPQGIPSNTRYLNLM-ENN--IQMIQADTFRHLHHLE 102

Query: 647 VLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV-CHLQRIQVLDLSQNNIS 705
           VL LG N I   I     + L  L  L L  N     +P     +L +++ L L  N I 
Sbjct: 103 VLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE 160

Query: 706 GTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYN------DHALLVWKRKDSEYRNTLGLV 759
                  N + ++             L            + A              L  +
Sbjct: 161 SIPSYAFNRVPSLMR-----------LDLGELKKLEYISEGAF-----------EGLFNL 198

Query: 760 KSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
           K ++L    +  ++P +T LVGL  L +S N      P    GL+ L  L +  + +
Sbjct: 199 KYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.5 bits (147), Expect = 1e-09
 Identities = 48/250 (19%), Positives = 72/250 (28%), Gaps = 55/250 (22%)

Query: 497 DLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPP--EIDLSANSFEGPIPPIPLTVTSLILF 554
            +  N  YLNL  N+   +  D    F        + L  NS    I  I          
Sbjct: 72  GIPSNTRYLNLMENNIQMIQADT---FRHLHHLEVLQLGRNS----IRQIE--------- 115

Query: 555 KNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDS 614
              F+G L+ L          L+L DN L+       +   KL  L L NN     IP  
Sbjct: 116 VGAFNG-LASL--------NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSY 165

Query: 615 MDFNCMML-SLHLRNNSFIGELP--------------------SSVKSF---TQLTVLDL 650
                  L  L L     +  +                       + +      L  L++
Sbjct: 166 AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEM 225

Query: 651 GHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV-CHLQRIQVLDLSQNNISGTVP 709
             N    I P      L  L  L + ++     +       L  +  L+L+ NN+S    
Sbjct: 226 SGNHFPEIRPGSF-HGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPH 283

Query: 710 QCLNNLTAMT 719
                L  + 
Sbjct: 284 DLFTPLRYLV 293

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  118 bits (296), Expect = 1e-27
 Identities = 72/327 (22%), Positives = 125/327 (38%), Gaps = 64/327 (19%)

Query: 138 SLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLN 197
           +L N + +   N+         L +   ++ L+L+        ++E +   +F       
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL------QIEEIDTYAF------- 95

Query: 198 QVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSN 257
                         +   ++ +L +    +  +       F N    L  L L  ND+S 
Sbjct: 96  --------------AYAHTIQKLYMGFNAIRYLPPH---VFQNVP-LLTVLVLERNDLS- 136

Query: 258 SVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCR 317
           S+   +F+++  L  L +S+N L+  I D  F   TSL  L LS+N+L  V      +  
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPS 193

Query: 318 LRALYQDSNNLTDLLPNLFLK---LSNCSRDT--------LEILQLNSNMLRGSLPDITL 366
           L       N L+ L   + ++    S+ S +         L IL+L  N L      +  
Sbjct: 194 LFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT-DTAWLLN 252

Query: 367 FSSLKELHLYDNM--------------LDVLYLNNNRFTGTLTKSIGQLSQLELLDVASN 412
           +  L E+ L  N               L+ LY++NNR    L      +  L++LD++ N
Sbjct: 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHN 311

Query: 413 SLKGMITEAHLSNLSRLTYLDLSHNSL 439
            L  +  E +     RL  L L HNS+
Sbjct: 312 HLLHV--ERNQPQFDRLENLYLDHNSI 336

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  103 bits (258), Expect = 5e-23
 Identities = 61/275 (22%), Positives = 105/275 (38%), Gaps = 33/275 (12%)

Query: 108 SSSLIGLQHLNYLNMKYNDFGGKQIPAFI-GSLKNIRHLDLSNAGFTGRVPYQLGNLTSL 166
                 +  L  L ++ ND     +P  I  +   +  L +SN              TSL
Sbjct: 116 PHVFQNVPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173

Query: 167 QYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCN 226
           Q L LS N          L+ +       L   N+  + + L  ++   ++ EL     +
Sbjct: 174 QNLQLSSNR---------LTHVDLSLIPSLFHANV--SYNLLSTLAIPIAVEELDASHNS 222

Query: 227 LPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPD 286
           +  V           +  L  L L  N+++++       +   LV +DLS N+L+  I  
Sbjct: 223 INVV-------RGPVNVELTILKLQHNNLTDTA---WLLNYPGLVEVDLSYNELEK-IMY 271

Query: 287 SAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDT 346
             F     L  L +SNN+LV++    + +  L+ L    N+L  +  N   +        
Sbjct: 272 HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQP-QFDR----- 325

Query: 347 LEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLD 381
           LE L L+ N +  +L  ++   +LK L L  N  D
Sbjct: 326 LENLYLDHNSIV-TLK-LSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  103 bits (257), Expect = 6e-23
 Identities = 73/473 (15%), Positives = 146/473 (30%), Gaps = 141/473 (29%)

Query: 239 SNSSRSLAHLDLSLNDVSNSVYYWLFNSS-SSLVYLDLSSNKLQGPIPDSAFPNPTSLSY 297
           SN        D+ ++  +  VY+   + + ++   +   ++ ++  +P +   +   +  
Sbjct: 21  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFRQVEL 79

Query: 298 LDLSNNQLVSVPK-SFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNM 356
           L+L++ Q+  +   +F     ++ LY   N +  L P++F  +                 
Sbjct: 80  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL--------------- 124

Query: 357 LRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKG 416
                                  L VL L  N  +           +L  L +++N+L+ 
Sbjct: 125 -----------------------LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE- 160

Query: 417 MITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNK 476
            I +      + L  L LS                                       N+
Sbjct: 161 RIEDDTFQATTSLQNLQLSS--------------------------------------NR 182

Query: 477 FSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANS 536
            + +D           +      P+L++ N+S+N  + +                     
Sbjct: 183 LTHVD----------LSLI----PSLFHANVSYNLLSTL--------------------- 207

Query: 537 FEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHF---RYLDLSDNLLSGELPNCSKN 593
                  IP+ V  L    N  +        +          L L  N L+ +      N
Sbjct: 208 ------AIPIAVEELDASHNSIN-------VVRGPVNVELTILKLQHNNLT-DTAWLL-N 252

Query: 594 WQKLTVLNLANNKFSGKIPDSMDFNCMML-SLHLRNNSFIGELPSSVKSFTQLTVLDLGH 652
           +  L  ++L+ N+   KI          L  L++ NN  +  L    +    L VLDL H
Sbjct: 253 YPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSH 310

Query: 653 NKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNIS 705
           N +  +           L  L L  N+    V +++     ++ L LS N+  
Sbjct: 311 NHLLHVERNQPQ--FDRLENLYLDHNSI---VTLKLSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 82.3 bits (203), Expect = 2e-16
 Identities = 70/463 (15%), Positives = 141/463 (30%), Gaps = 108/463 (23%)

Query: 352 LNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVAS 411
           +         P    +  +     YD +   ++++              L+  +++   +
Sbjct: 1   VGGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN 60

Query: 412 NSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWL 471
           ++++  +  A L +  ++  L+L+                ++  I   A           
Sbjct: 61  STMR-KLPAALLDSFRQVELLNLNDL--------------QIEEIDTYA----------F 95

Query: 472 QTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEID 531
              +   +L +    I    P+ F ++ P L  L L  N  + +   +          + 
Sbjct: 96  AYAHTIQKLYMGFNAIRYLPPHVFQNV-PLLTVLVLERNDLSSLPRGIFHNTPKLT-TLS 153

Query: 532 LSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCS 591
           +S N+ E              +  + F    + L        + L LS N L+  +    
Sbjct: 154 MSNNNLE-------------RIEDDTFQA-TTSL--------QNLQLSSNRLT-HVD--L 188

Query: 592 KNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651
                L   N++ N  S     ++     +  L   +NS I  +   V    +LT+L L 
Sbjct: 189 SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNS-INVVRGPV--NVELTILKLQ 240

Query: 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQC 711
           HN ++      +    P LV + L  N     +      +QR++ L +S N +   +   
Sbjct: 241 HNNLTDT-AWLLN--YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLY 296

Query: 712 LNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYG 771
              +  +                                         K +DLS N L  
Sbjct: 297 GQPIPTL-----------------------------------------KVLDLSHNHLLH 315

Query: 772 EIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKN 814
                     L +L L  NS+   +   +     L +L LS N
Sbjct: 316 VERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHN 355

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 74.2 bits (182), Expect = 8e-14
 Identities = 49/277 (17%), Positives = 106/277 (38%), Gaps = 22/277 (7%)

Query: 544 IPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLA 603
           + + + +  ++      +L+          + +   ++ +         +++++ +LNL 
Sbjct: 32  VHIDMQTQDVYFGFEDITLNNQ--------KIVTFKNSTMRKLPAALLDSFRQVELLNLN 83

Query: 604 NNKFSGKIPDSMDFNCMML-SLHLRNNSFIGELPSSV-KSFTQLTVLDLGHNKISGIIPA 661
           + +   +I          +  L++  N+ I  LP  V ++   LTVL L  N +S  +P 
Sbjct: 84  DLQIE-EIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLS-SLPR 140

Query: 662 WIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTA--MT 719
            I  + P L  LS+ +NN              +Q L LS N ++      + +L    ++
Sbjct: 141 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVS 200

Query: 720 ANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSL 779
            N  S   I   +     + +++      +         +  + L  N L  +   + + 
Sbjct: 201 YNLLSTLAIPIAVEELDASHNSI------NVVRGPVNVELTILKLQHNNL-TDTAWLLNY 253

Query: 780 VGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
            GL+ ++LS N L   +      +  L  L +S N L
Sbjct: 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 71.9 bits (176), Expect = 4e-13
 Identities = 59/321 (18%), Positives = 105/321 (32%), Gaps = 62/321 (19%)

Query: 500 PNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFS 559
            N   +   ++    +   L   F      ++L+    E  I                F+
Sbjct: 51  NNQKIVTFKNSTMRKLPAALLDSFRQVE-LLNLNDLQIEE-IDT------------YAFA 96

Query: 560 GSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNC 619
                +        + L +  N +    P+  +N   LTVL L  N  S  +P  +  N 
Sbjct: 97  Y-AHTI--------QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNT 146

Query: 620 MML-SLHLRNNSFIGELPSSV-KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRS 677
             L +L + NN+ +  +     ++ T L  L L  N+++ +  +     +P L   ++  
Sbjct: 147 PKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVDLSL----IPSLFHANVSY 201

Query: 678 NNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYY 737
           N         +     ++ LD S N+I+         LT +      N +       +Y 
Sbjct: 202 NLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELTIL--KLQHNNLTDTAWLLNYP 254

Query: 738 NDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVT--SLVGLISLNLSKNSLTGP 795
                                +  +DLS N L  +I       +  L  L +S N L   
Sbjct: 255 G--------------------LVEVDLSYNEL-EKIMYHPFVKMQRLERLYISNNRLVA- 292

Query: 796 IPSKIGGLTLLNSLDLSKNML 816
           +      +  L  LDLS N L
Sbjct: 293 LNLYGQPIPTLKVLDLSHNHL 313

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 71.9 bits (176), Expect = 4e-13
 Identities = 51/260 (19%), Positives = 96/260 (36%), Gaps = 19/260 (7%)

Query: 561 SLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCM 620
           +L + C   D H   +D+    +     +         ++   N+    K+P ++  +  
Sbjct: 22  NLQYDCVFYDVH---IDMQTQDVYFGFEDI--TLNNQKIVTFKNSTMR-KLPAALLDSFR 75

Query: 621 ML-SLHLRNNSFIGELPSSV-KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSN 678
            +  L+L +   I E+ +        +  L +G N I   +P  +  ++P L VL L  N
Sbjct: 76  QVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERN 133

Query: 679 NFHGRVPVQV-CHLQRIQVLDLSQNNISGTVPQCLNNLTAMTA-NKSSNAMIRYPLRTDY 736
           +    +P  +  +  ++  L +S NN+           T++     SSN +    L    
Sbjct: 134 DLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL-I 191

Query: 737 YNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPI 796
            +     V     S     + + + +D S N +   +      V L  L L  N+LT   
Sbjct: 192 PSLFHANVSYNLLSTLAIPIAV-EELDASHNSI-NVVRG-PVNVELTILKLQHNNLT-DT 247

Query: 797 PSKIGGLTLLNSLDLSKNML 816
              +     L  +DLS N L
Sbjct: 248 AW-LLNYPGLVEVDLSYNEL 266

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  113 bits (284), Expect = 1e-27
 Identities = 55/349 (15%), Positives = 101/349 (28%), Gaps = 65/349 (18%)

Query: 132 IPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFL 191
           I     +    +   ++++     +     +  +++ LDLS N       L  +S     
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN------PLSQISAADL- 54

Query: 192 EYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLS 251
                               +    L  L L    L   +   S+S      +L  LDL+
Sbjct: 55  --------------------APFTKLELLNLSSNVLYETLDLESLS------TLRTLDLN 88

Query: 252 LNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK- 310
            N V             S+  L  ++N +   +  S          + L+NN++  +   
Sbjct: 89  NNYVQE------LLVGPSIETLHAANNNISR-VSCSRGQG---KKNIYLANNKITMLRDL 138

Query: 311 SFRNLCRLRALYQDSNNLTDL-LPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSS 369
                 R++ L    N +  +    L           LE L L  N +   +    +F+ 
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDT-----LEHLNLQYNFIY-DVKGQVVFAK 192

Query: 370 LKELHLYDN-------------MLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKG 416
           LK L L  N              +  + L NN+    + K++     LE  D+  N    
Sbjct: 193 LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251

Query: 417 MITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGP 465
                  S   R+  +       +            L       C+  P
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  101 bits (255), Expect = 1e-23
 Identities = 61/407 (14%), Positives = 125/407 (30%), Gaps = 108/407 (26%)

Query: 263 LFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVP-KSFRNLCRLRAL 321
           +  + +      ++ + L+     S   +  ++  LDLS N L  +         +L  L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 322 YQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNM-- 379
              SN L + L      LS      L  L LN+N ++    ++ +  S++ LH  +N   
Sbjct: 64  NLSSNVLYETLD--LESLST-----LRTLDLNNNYVQ----ELLVGPSIETLHAANNNIS 112

Query: 380 ---------LDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLT 430
                       +YL NN+ T       G  S+++ LD+  N +  +      ++   L 
Sbjct: 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 431 YLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDT 490
           +L+L +N +                               +        LD+S+ +++  
Sbjct: 173 HLNLQYNFIY-------------------------DVKGQVVFAK-LKTLDLSSNKLA-F 205

Query: 491 VPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTS 550
           +   F      + +++L +N    +              +                    
Sbjct: 206 MGPEFQSA-AGVTWISLRNNKLVLI-----------EKAL-------------------- 233

Query: 551 LILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLS-GELPNCSKNWQKLTVLNLANNKFSG 609
                         L         + DL  N    G L +     Q++  +     K   
Sbjct: 234 ---------RFSQNL--------EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK--- 273

Query: 610 KIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKIS 656
           K+    +  C + +L         +LP+         ++ LGH+   
Sbjct: 274 KLTGQNEEECTVPTLGHYGAYCCEDLPAP----FADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 91.2 bits (227), Expect = 4e-20
 Identities = 50/311 (16%), Positives = 104/311 (33%), Gaps = 53/311 (17%)

Query: 91  TMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPA-FIGSLKNIRHLDLSN 149
            +  +   +   L+  ++S      ++  L++  N     QI A  +     +  L+LS+
Sbjct: 13  KIEKV---TDSSLKQALASLRQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSS 67

Query: 150 AGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQ 209
                     L +L++L+ LDL+ N       ++ L     +E +     N+   +    
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNN------YVQELLVGPSIETLHAANNNISRVSC--- 116

Query: 210 VVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSS 269
             S+      + L    +  +        S     + +LDL LN++    +  L  SS +
Sbjct: 117 --SRGQGKKNIYLANNKITMLRDLDEGCRSR----VQYLDLKLNEIDTVNFAELAASSDT 170

Query: 270 LVYLDLSSNKLQGPIP---------------------DSAFPNPTSLSYLDLSNNQLVSV 308
           L +L+L  N +   +                         F +   ++++ L NN+LV +
Sbjct: 171 LEHLNLQYNFIYD-VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI 229

Query: 309 PKSFRNLCRLRALYQDSNNLT-DLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLF 367
            K+ R    L       N      L + F K          +  +    ++         
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN-------QRVQTVAKQTVKKLTGQNEEE 282

Query: 368 SSLKELHLYDN 378
            ++  L  Y  
Sbjct: 283 CTVPTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 87.0 bits (216), Expect = 1e-18
 Identities = 53/340 (15%), Positives = 109/340 (32%), Gaps = 93/340 (27%)

Query: 369 SLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSR 428
           ++ E+    N   +  + ++     L         ++ LD++ N L  +     L+  ++
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTK 59

Query: 429 LTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEIS 488
           L  L+LS N L                                              E  
Sbjct: 60  LELLNLSSNVL---------------------------------------------YETL 74

Query: 489 DTVPNWFWDLSPNLYYLNLSHNHFT--GMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPL 546
           D        LS  L  L+L++N+     + P +          +  + N+         +
Sbjct: 75  D-----LESLS-TLRTLDLNNNYVQELLVGPSIE--------TLHAANNN---------I 111

Query: 547 TVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNK 606
           +  S    +                  + + L++N ++           ++  L+L  N+
Sbjct: 112 SRVSCSRGQGK----------------KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155

Query: 607 FSGKIPDSMDFNCMML-SLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGD 665
                   +  +   L  L+L+ N  I ++   V  F +L  LDL  NK++ + P +   
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQV-VFAKLKTLDLSSNKLAFMGPEF--Q 211

Query: 666 SLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNIS 705
           S   +  +SLR+N     +   +   Q ++  DL  N   
Sbjct: 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 84.3 bits (209), Expect = 8e-18
 Identities = 41/244 (16%), Positives = 85/244 (34%), Gaps = 31/244 (12%)

Query: 574 RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIG 633
           +   ++D+ L   L +  ++   +  L+L+ N  S      +     +  L+L +N  + 
Sbjct: 13  KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LY 71

Query: 634 ELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQR 693
           E    ++S + L  LDL +N +  +         P +  L   +NN   RV       Q 
Sbjct: 72  ETLD-LESLSTLRTLDLNNNYVQEL------LVGPSIETLHAANNNIS-RVSCSR--GQG 121

Query: 694 IQVLDLSQNNISGTVPQCLNNLTAMTA-NKSSNAMIRYPLRTDYYNDHALLVWKRKDSEY 752
            + + L+ N I+          + +   +   N +          +   L          
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL---------- 171

Query: 753 RNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLS 812
                  + ++L  N +Y ++        L +L+LS N L   +  +      +  + L 
Sbjct: 172 -------EHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLR 222

Query: 813 KNML 816
            N L
Sbjct: 223 NNKL 226

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 82.3 bits (204), Expect = 4e-17
 Identities = 59/354 (16%), Positives = 107/354 (30%), Gaps = 79/354 (22%)

Query: 307 SVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPD-IT 365
           ++ +  +N  R +      ++L   L +L     N     ++ L L+ N L       + 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWN-----VKELDLSGNPLSQISAADLA 55

Query: 366 LFSSLKELHLYDN------------MLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNS 413
            F+ L+ L+L  N             L  L LNNN         +     +E L  A+N+
Sbjct: 56  PFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNN 110

Query: 414 LKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQT 473
               I+    S       + L++N +     +      E    R+               
Sbjct: 111 ----ISRVSCSRGQGKKNIYLANNKI-----TMLRDLDEGCRSRV--------------- 146

Query: 474 QNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLS 533
                 LD+   EI           S  L +LNL +N     +        A    +DLS
Sbjct: 147 ----QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV--VFAKLKTLDLS 199

Query: 534 ANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKN 593
           +N     + P   +   +                       ++ L +N L   +    + 
Sbjct: 200 SNKLAF-MGPEFQSAAGV----------------------TWISLRNNKLV-LIEKALRF 235

Query: 594 WQKLTVLNLANNKFS-GKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLT 646
            Q L   +L  N F  G + D    N  + ++  +    +        +   L 
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 78.1 bits (193), Expect = 9e-16
 Identities = 52/245 (21%), Positives = 82/245 (33%), Gaps = 34/245 (13%)

Query: 574 RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIG 633
           + LDLS N LS         + KL +LNL++N    +  D    +  + +L L NN    
Sbjct: 37  KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLDLESLS-TLRTLDLNNNYV-- 92

Query: 634 ELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQR 693
                +     +  L   +N IS +              + L +N       +      R
Sbjct: 93  ---QELLVGPSIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSR 145

Query: 694 IQVLDLSQNNISG-TVPQCLNNLTAMTA-NKSSNAMIRYPLRTDYYNDHALLVWKRKDSE 751
           +Q LDL  N I      +   +   +   N   N +     +                  
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV----------------- 188

Query: 752 YRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDL 811
                  +K++DLSSN+L    PE  S  G+  ++L  N L   I   +     L   DL
Sbjct: 189 ---VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDL 244

Query: 812 SKNML 816
             N  
Sbjct: 245 RGNGF 249

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 44/247 (17%), Positives = 82/247 (33%), Gaps = 18/247 (7%)

Query: 475 NKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSA 534
           N++    V+ + +   + +       N+  L+LS N  + +       FT     ++LS+
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSA-WNVKELDLSGNPLSQISAADLAPFTKLE-LLNLSS 67

Query: 535 NSFEGPIPPIPLT-VTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKN 593
           N     +    L+ + +L L  N     L     I       L  ++N +S  +      
Sbjct: 68  NVLYETLDLESLSTLRTLDLNNNYVQ-ELLVGPSI-----ETLHAANNNIS-RVS--CSR 118

Query: 594 WQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIG-ELPSSVKSFTQLTVLDLGH 652
            Q    + LANNK +            +  L L+ N            S   L  L+L +
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 653 NKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCL 712
           N I   +   +      L  L L SN     +  +      +  + L  N +   + + L
Sbjct: 179 NFIY-DVKGQV--VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKAL 233

Query: 713 NNLTAMT 719
                + 
Sbjct: 234 RFSQNLE 240

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.8 bits (122), Expect = 9e-07
 Identities = 19/182 (10%), Positives = 59/182 (32%), Gaps = 51/182 (28%)

Query: 635 LPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRI 694
           +    ++  +  +  +  + +     A +  S  ++  L L  N         +    ++
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 695 QVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRN 754
           ++L+LS N +       L +L+ +                                    
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTL------------------------------------ 82

Query: 755 TLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKN 814
                +++DL++N     + E+     + +L+ + N+++  +           ++ L+ N
Sbjct: 83  -----RTLDLNNNY----VQELLVGPSIETLHAANNNISR-VSCSR--GQGKKNIYLANN 130

Query: 815 ML 816
            +
Sbjct: 131 KI 132

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  116 bits (292), Expect = 2e-27
 Identities = 94/475 (19%), Positives = 172/475 (36%), Gaps = 41/475 (8%)

Query: 265 NSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQ 323
           + S     L++S N +   +  S   + + L  L +S+N++  +  S F+    L  L  
Sbjct: 18  DLSQKTTILNISQNYISE-LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76

Query: 324 DSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVL 383
             N L  +         N     L+ L L+ N    +LP    F ++ +L         L
Sbjct: 77  SHNKLVKIS---CHPTVN-----LKHLDLSFNAFD-ALPICKEFGNMSQLK-------FL 120

Query: 384 YLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLS----RLTYLDLSHNSL 439
            L+      +    I  L+  ++L V   +         L + +     + +        
Sbjct: 121 GLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHF 180

Query: 440 ILNFGSGWVPSFELNIIRL----GACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWF 495
           IL+     V + EL+ I+       C         LQT  K S L ++  E +       
Sbjct: 181 ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI 240

Query: 496 WDL--SPNLYYLNLSHNHFTGML----PDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVT 549
             L     ++Y ++S+    G L     D S           + ++ F  P   I    +
Sbjct: 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS 300

Query: 550 SLILFKNMFSG--SLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKF 607
           ++ +     SG   +  LC      F +LD S+NLL+  +     +  +L  L L  N+ 
Sbjct: 301 NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360

Query: 608 SGKIPDSMDFNCM--MLSLHLRNNSFIGELPSSVKSF-TQLTVLDLGHNKISGIIPAWIG 664
                 +     M  +  L +  NS   +      S+   L  L++  N ++  I   + 
Sbjct: 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL- 419

Query: 665 DSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMT 719
              P + VL L SN     +P QV  L+ +Q L+++ N +        + LT++ 
Sbjct: 420 --PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQ 471

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  114 bits (286), Expect = 1e-26
 Identities = 83/545 (15%), Positives = 170/545 (31%), Gaps = 74/545 (13%)

Query: 273 LDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSV-PKSFRNLCRLRALYQDSNNLTDL 331
           +D S N L   +P          + L++S N +  +      +L +LR L    N +  L
Sbjct: 5   VDRSKNGLIH-VPKDL---SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL 60

Query: 332 LPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFT 391
             ++F          LE L L+ N L   +       +LK L L  N  D L        
Sbjct: 61  DISVFKFNQE-----LEYLDLSHNKLV-KISCHPT-VNLKHLDLSFNAFDAL-------- 105

Query: 392 GTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSF 451
             + K  G +SQL+ L +++  L+   +   +++L+    L +   +         +  F
Sbjct: 106 -PICKEFGNMSQLKFLGLSTTHLEK-SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF 163

Query: 452 ELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNH 511
               + +           ++   +  +  ++  + I         D   + +   L+   
Sbjct: 164 NTESLHIVFPTNKE--FHFILDVSVKTVANLELSNIK----CVLEDNKCSYFLSILAKLQ 217

Query: 512 FTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDE 571
               L +L+           +              +++++ L   +      +    S +
Sbjct: 218 TNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT-SLK 276

Query: 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSF 631
                 +  ++         + +  + + N   +                L L   NN  
Sbjct: 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336

Query: 632 IGELPSSVKSFTQLTVLDLGHNKISGI-IPAWIGDSLPDLVVLSLRSNNFHGRVPVQVC- 689
              +  +    T+L  L L  N++  +   A +   +  L  L +  N+         C 
Sbjct: 337 TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396

Query: 690 HLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKD 749
             + +  L++S N ++ T+ +CL                                     
Sbjct: 397 WTKSLLSLNMSSNILTDTIFRCL------------------------------------- 419

Query: 750 SEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSL 809
                    +K +DL SN++     +V  L  L  LN++ N L          LT L  +
Sbjct: 420 ------PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKI 473

Query: 810 DLSKN 814
            L  N
Sbjct: 474 WLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  108 bits (272), Expect = 5e-25
 Identities = 97/545 (17%), Positives = 180/545 (33%), Gaps = 76/545 (13%)

Query: 145 LDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEA 204
           +D S  G    VP  L        L++S N             +S L             
Sbjct: 5   VDRSKNGLI-HVPKDLS--QKTTILNISQN------------YISELWT----------- 38

Query: 205 TDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLF 264
                 +  L  L  L +    +  +  S    F   ++ L +LDLS N +         
Sbjct: 39  ----SDILSLSKLRILIISHNRIQYLDISV---FK-FNQELEYLDLSHNKLVKI----SC 86

Query: 265 NSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVP-KSFRNLCRLRALYQ 323
           + + +L +LDLS N          F N + L +L LS   L         +L   + L  
Sbjct: 87  HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLV 146

Query: 324 DSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVL 383
                          L + + ++L I+   +      L       +  EL     +L+  
Sbjct: 147 LGETY--GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN 204

Query: 384 YLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNF 443
             +         ++  +LS L L ++   +    I    L   + + Y  +S+  L    
Sbjct: 205 KCSYFLSILAKLQTNPKLSNLTLNNI-ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQL 263

Query: 444 GSGWVPSFELNIIRLGACKQGPQFPKWLQT--QNKFSELDVSAAEISD--TVPNWFWDLS 499
                     ++  L   +       + Q+     FS +++    +S    V        
Sbjct: 264 DFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKI 323

Query: 500 PNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFS 559
               +L+ S+N  T  + +     T                       + +LIL  N   
Sbjct: 324 SPFLHLDFSNNLLTDTVFENCGHLT----------------------ELETLILQMNQLK 361

Query: 560 GSLSFLCQISDEHF--RYLDLSDNLLSGELPNCSKNW-QKLTVLNLANNKFSGKIPDSMD 616
             LS + +++ +    + LD+S N +S +      +W + L  LN+++N  +  I   + 
Sbjct: 362 -ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP 420

Query: 617 FNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLR 676
               +  L L +N  I  +P  V     L  L++  N++   +P  I D L  L  + L 
Sbjct: 421 PR--IKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLH 476

Query: 677 SNNFH 681
           +N + 
Sbjct: 477 TNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  108 bits (271), Expect = 9e-25
 Identities = 58/361 (16%), Positives = 129/361 (35%), Gaps = 38/361 (10%)

Query: 108 SSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDL-----SNAGFTGRVPYQLGN 162
            SS++ + HLN   +                L++     L     +N  F   +   +  
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKT 188

Query: 163 LTSLQYLDLSFN-----FDMLSKKLEWLSQLSFLEYVRLNQVNL-GEATDWLQVVSQLPS 216
           + +L+  ++               L  L     L  + LN +     +   +  +    +
Sbjct: 189 VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT 248

Query: 217 LTELQLRGCNLPSVIASSSVSFSNSS-RSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDL 275
           +    +    L   +      +S +S ++L+   +  +        +++   S++   + 
Sbjct: 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFP-QSYIYEIFSNMNIKNF 307

Query: 276 SSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVP-KSFRNLCRLRALYQDSNNLTDL--L 332
           + +  +  +        +   +LD SNN L     ++  +L  L  L    N L +L  +
Sbjct: 308 TVSGTRM-VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366

Query: 333 PNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFS--SLKELHLYDNMLD--------- 381
             +  ++ +     L+ L ++ N +             SL  L++  N+L          
Sbjct: 367 AEMTTQMKS-----LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP 421

Query: 382 ---VLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNS 438
              VL L++N+   ++ K + +L  L+ L+VASN LK  + +     L+ L  + L  N 
Sbjct: 422 RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNP 479

Query: 439 L 439
            
Sbjct: 480 W 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 93.8 bits (233), Expect = 4e-20
 Identities = 53/339 (15%), Positives = 117/339 (34%), Gaps = 27/339 (7%)

Query: 113 GLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLS 172
              +L +L++ +N F    I    G++  ++ L LS           + +L   + L + 
Sbjct: 88  PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVL 147

Query: 173 FNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIA 232
                  +  E L   +      +   N          V  + +L    ++     +  +
Sbjct: 148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS 207

Query: 233 SSSVSFSNSSRSLAHLDLSLNDVSNSVYYWL----FNSSSSLVYLDLSSNKLQGPI---- 284
                 +    +    +L+LN++  +   ++        +++ Y  +S+ KLQG +    
Sbjct: 208 YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRD 267

Query: 285 PDSAFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTDLLPNLFLKLSNCS 343
            D +  +  +LS   + ++         +     +       +    +      K+S   
Sbjct: 268 FDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISP-- 325

Query: 344 RDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIG---Q 400
                 L  ++N+L  ++ +      L EL         L L  N+    L+K      Q
Sbjct: 326 ---FLHLDFSNNLLTDTVFEN--CGHLTELE-------TLILQMNQLK-ELSKIAEMTTQ 372

Query: 401 LSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
           +  L+ LD++ NS+     +   S    L  L++S N L
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 85.3 bits (211), Expect = 2e-17
 Identities = 79/498 (15%), Positives = 158/498 (31%), Gaps = 87/498 (17%)

Query: 113 GLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTG-RVPYQLGNLTSLQYLDL 171
             Q L YL++ +N     +I        N++HLDLS   F    +  + GN++ L++L L
Sbjct: 67  FNQELEYLDLSHNKL--VKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGL 122

Query: 172 SFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLP-SLTELQLRGCNLPSV 230
           S            L + S L    LN   +           + P  L +      ++   
Sbjct: 123 STTH---------LEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173

Query: 231 IASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFP 290
                    + S      +L L+++   +     +   S++    ++ KL          
Sbjct: 174 TNKEFHFILDVS-VKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL------- 225

Query: 291 NPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEIL 350
              +L+ ++ + N  + + +       +      +  L   L       S  S   L I 
Sbjct: 226 ---TLNNIETTWNSFIRILQ-LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH 281

Query: 351 QLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVA 410
           Q+ S++     P   ++            +++     +           ++S    LD +
Sbjct: 282 QVVSDVF--GFPQSYIYEIFSN-------MNIKNFTVSGTRMVHMLCPSKISPFLHLDFS 332

Query: 411 SNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKW 470
           +N L   + E    +L+ L  L L  N L                      K+  +  + 
Sbjct: 333 NNLLTDTVFEN-CGHLTELETLILQMNQL----------------------KELSKIAEM 369

Query: 471 LQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEI 530
                   +LD+S   +S          + +L  LN+S N  T  +             +
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR---CLPPRIKVL 426

Query: 531 DLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNC 590
           DL +N  +  IP   + + +L                      + L+++ N L   +P+ 
Sbjct: 427 DLHSNKIKS-IPKQVVKLEAL----------------------QELNVASNQLK-SVPDG 462

Query: 591 S-KNWQKLTVLNLANNKF 607
                  L  + L  N +
Sbjct: 463 IFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 83.4 bits (206), Expect = 7e-17
 Identities = 55/301 (18%), Positives = 102/301 (33%), Gaps = 31/301 (10%)

Query: 94  NLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIG--SLKNIRHLDLSNAG 151
            +   +      +I + L     L+ L +   +         +       + +  +SN  
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258

Query: 152 FTG-----RVPYQLGNLTSLQYLDLSFN--FDMLSKKLEWLSQLSFLEYVRLNQVNLGEA 204
             G        Y   +L +L    +  +      S   E  S ++      ++   +   
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK-NFTVSGTRMVHM 317

Query: 205 TDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSN-SVYYWL 263
                  S++     L      L   +  +    +     L  L L +N +   S    +
Sbjct: 318 L----CPSKISPFLHLDFSNNLLTDTVFENCGHLTE----LETLILQMNQLKELSKIAEM 369

Query: 264 FNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCR-LRALY 322
                SL  LD+S N +             SL  L++S+N L      FR L   ++ L 
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI--FRCLPPRIKVLD 427

Query: 323 QDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITL--FSSLKELHLYDNML 380
             SN +   +P   +KL       L+ L + SN L+ S+PD      +SL+++ L+ N  
Sbjct: 428 LHSNKIKS-IPKQVVKLEA-----LQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

Query: 381 D 381
           D
Sbjct: 481 D 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 61.8 bits (150), Expect = 5e-10
 Identities = 71/454 (15%), Positives = 128/454 (28%), Gaps = 107/454 (23%)

Query: 380 LDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
             +L ++ N  +   T  I  LS+L +L ++ N ++ +           L YLDLSHN L
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISV-FKFNQELEYLDLSHNKL 81

Query: 440 -ILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDL 498
             ++      P+  L  + L                N F  L +            F ++
Sbjct: 82  VKISCH----PTVNLKHLDLS--------------FNAFDALPICKE---------FGNM 114

Query: 499 SPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMF 558
              L +L LS  H                    L  +S           V  ++      
Sbjct: 115 -SQLKFLGLSTTH--------------------LEKSSVLPIAHLNISKVLLVLGETYGE 153

Query: 559 SGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDF- 617
                 L   + E    +  ++      L    K    L + N+       K    +   
Sbjct: 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL 213

Query: 618 -----NCMMLSLHLRNNSFIGELPSSVKSF---TQLTVLDLGHNKISGII----PAWIGD 665
                N  + +L L N          +      T +    + + K+ G +      + G 
Sbjct: 214 AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT 273

Query: 666 SLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSN 725
           SL  L +  + S+ F             + + + + +        C + ++         
Sbjct: 274 SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISP-------- 325

Query: 726 AMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEV-TSLVGLIS 784
                                               +D S+N L   + E    L  L +
Sbjct: 326 ---------------------------------FLHLDFSNNLLTDTVFENCGHLTELET 352

Query: 785 LNLSKNSLT--GPIPSKIGGLTLLNSLDLSKNML 816
           L L  N L     I      +  L  LD+S+N +
Sbjct: 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  110 bits (276), Expect = 8e-27
 Identities = 60/226 (26%), Positives = 87/226 (38%), Gaps = 21/226 (9%)

Query: 215 PSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLD 274
            +   + L G  +  V A+S   F    R+L  L L  N ++  +    F   + L  LD
Sbjct: 32  AASQRIFLHGNRISHVPAAS---FRAC-RNLTILWLHSNVLA-RIDAAAFTGLALLEQLD 86

Query: 275 LSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRALYQDSNNLTDLLP 333
           LS N     +  + F     L  L L    L  +    FR L  L+ LY   N L  L  
Sbjct: 87  LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146

Query: 334 NLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGT 393
           + F  L N     L  L L+ N +  S+P+   F  L  L         L L+ NR    
Sbjct: 147 DTFRDLGN-----LTHLFLHGNRIS-SVPE-RAFRGLHSLD-------RLLLHQNRVAHV 192

Query: 394 LTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
              +   L +L  L + +N+L   +    L+ L  L YL L+ N  
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  103 bits (259), Expect = 2e-24
 Identities = 57/244 (23%), Positives = 88/244 (36%), Gaps = 41/244 (16%)

Query: 141 NIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVN 200
             + + L     +           +L  L L  N       L  +   +F          
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSN------VLARIDAAAF---------- 76

Query: 201 LGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVY 260
                      + L  L +L L        +  ++  F    R L  L L    +   + 
Sbjct: 77  -----------TGLALLEQLDLSDNAQLRSVDPAT--FHGLGR-LHTLHLDRCGLQ-ELG 121

Query: 261 YWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLR 319
             LF   ++L YL L  N LQ  +PD  F +  +L++L L  N++ SVP+ +FR L  L 
Sbjct: 122 PGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180

Query: 320 ALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITL--FSSLKELHLYD 377
            L    N +  + P+ F  L       L  L L +N L  +LP   L    +L+ L L D
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGR-----LMTLYLFANNLS-ALPTEALAPLRALQYLRLND 234

Query: 378 NMLD 381
           N   
Sbjct: 235 NPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.5 bits (168), Expect = 9e-13
 Identities = 56/201 (27%), Positives = 76/201 (37%), Gaps = 13/201 (6%)

Query: 108 SSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLS-NAGFTGRVPYQLGNLTSL 166
           ++S    ++L  L +  N        AF G L  +  LDLS NA      P     L  L
Sbjct: 49  AASFRACRNLTILWLHSNVLARIDAAAFTG-LALLEQLDLSDNAQLRSVDPATFHGLGRL 107

Query: 167 QYLDLSFN-FDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGC 225
             L L       L         L+ L+Y+ L    L    D       L +LT L L G 
Sbjct: 108 HTLHLDRCGLQELGP--GLFRGLAALQYLYLQDNALQALPD--DTFRDLGNLTHLFLHGN 163

Query: 226 NLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIP 285
            + SV      +F     SL  L L  N V+  V+   F     L+ L L +N L   +P
Sbjct: 164 RISSV---PERAFRGLH-SLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSA-LP 217

Query: 286 DSAFPNPTSLSYLDLSNNQLV 306
             A     +L YL L++N  V
Sbjct: 218 TEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 44/247 (17%), Positives = 81/247 (32%), Gaps = 52/247 (21%)

Query: 574 RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMML-SLHLRNNSFI 632
           + + L  N +S       +  + LT+L L +N  + +I  +      +L  L L +N+ +
Sbjct: 35  QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQL 93

Query: 633 GELPSSV-KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV-CH 690
             +  +      +L  L L    +   +   +   L  L  L L+ N     +P      
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRD 151

Query: 691 LQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDS 750
           L  +  L L  N IS    +    L ++                                
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLD------------------------------- 180

Query: 751 EYRNTLGLVKSIDLSSNRLYGEIPEVT--SLVGLISLNLSKNSLTGPIPSKI-GGLTLLN 807
                      + L  NR+   +       L  L++L L  N+L+  +P++    L  L 
Sbjct: 181 ----------RLLLHQNRV-AHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQ 228

Query: 808 SLDLSKN 814
            L L+ N
Sbjct: 229 YLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 59/305 (19%), Positives = 90/305 (29%), Gaps = 103/305 (33%)

Query: 380 LDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
              ++L+ NR +     S      L +L + SN L   I  A  + L+ L  LDLS N+ 
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQ 92

Query: 440 ILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLS 499
           +                                       +D          P  F  L 
Sbjct: 93  L-------------------------------------RSVD----------PATFHGL- 104

Query: 500 PNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFS 559
             L+ L+L                       +L    F G        + +L        
Sbjct: 105 GRLHTLHLDRCGLQ-----------------ELGPGLFRG--------LAAL-------- 131

Query: 560 GSLSFLCQISDEHFRYLDLSDNLLSGELPNCS-KNWQKLTVLNLANNKFSGKIPDSMDFN 618
                         +YL L DN L   LP+ + ++   LT L L  N+ S  +P+     
Sbjct: 132 --------------QYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRG 175

Query: 619 CMML-SLHLRNNSFIGELPSSV-KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLR 676
              L  L L  N  +  +     +   +L  L L  N +S  +P      L  L  L L 
Sbjct: 176 LHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLN 233

Query: 677 SNNFH 681
            N + 
Sbjct: 234 DNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.5 bits (155), Expect = 5e-11
 Identities = 50/228 (21%), Positives = 77/228 (33%), Gaps = 33/228 (14%)

Query: 497 DLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPP--EIDLSANSFEGPIPPIPLTVTSLILF 554
            +      + L  N  + +       F A      + L +N     I             
Sbjct: 29  GIPAASQRIFLHGNRISHVPAAS---FRACRNLTILWLHSNVLAR-IDA----------- 73

Query: 555 KNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCS-KNWQKLTVLNLANNKFSGKIPD 613
              F+G L+ L          LDLSDN     +   +     +L  L+L       ++  
Sbjct: 74  -AAFTG-LALL--------EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGP 122

Query: 614 SMDFNCMML-SLHLRNNSFIGELPSSV-KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLV 671
            +      L  L+L++N+ +  LP    +    LT L L  N+IS  +P      L  L 
Sbjct: 123 GLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLD 180

Query: 672 VLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMT 719
            L L  N      P     L R+  L L  NN+S    + L  L A+ 
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 40/187 (21%), Positives = 62/187 (33%), Gaps = 20/187 (10%)

Query: 541 IPP-IPLTVTSLILFKNMFSGSLSFLCQISDEHF------RYLDLSDNLLSGELPNCSKN 593
           +P  IP     + L  N  S        +    F        L L  N+L+         
Sbjct: 26  VPVGIPAASQRIFLHGNRIS-------HVPAASFRACRNLTILWLHSNVLARIDAAAFTG 78

Query: 594 WQKLTVLNLANNKFSGKIPDSMDFNCMML-SLHLRNNSFIGELPSSV-KSFTQLTVLDLG 651
              L  L+L++N     +  +       L +LHL     + EL   + +    L  L L 
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQ 137

Query: 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV-CHLQRIQVLDLSQNNISGTVPQ 710
            N +   +P      L +L  L L  N     VP +    L  +  L L QN ++   P 
Sbjct: 138 DNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 711 CLNNLTA 717
              +L  
Sbjct: 196 AFRDLGR 202

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 46/201 (22%), Positives = 68/201 (33%), Gaps = 28/201 (13%)

Query: 623 SLHLRNNSFIGELPSSV-KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFH 681
            + L  N  I  +P++  ++   LT+L L  N ++ I  A     L  L  L L  N   
Sbjct: 36  RIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAF-TGLALLEQLDLSDNAQL 93

Query: 682 GRVPVQV-CHLQRIQVLDLSQNNISGTVPQCLNNLTAMTA-NKSSNAMIRYPLRTDYYND 739
             V       L R+  L L +  +    P     L A+       NA+   P       D
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP-------D 146

Query: 740 HALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVT--SLVGLISLNLSKNSLTGPIP 797
                           LG +  + L  NR+   +PE     L  L  L L +N +   + 
Sbjct: 147 DTF-----------RDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAH-VH 193

Query: 798 SKI-GGLTLLNSLDLSKNMLM 817
                 L  L +L L  N L 
Sbjct: 194 PHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 50/235 (21%), Positives = 75/235 (31%), Gaps = 46/235 (19%)

Query: 479 ELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFE 538
            + +    IS      F     NL  L L  N                     + A +F 
Sbjct: 36  RIFLHGNRISHVPAASFRAC-RNLTILWLHSNVLA-----------------RIDAAAFT 77

Query: 539 GPIPPIPLT-VTSLILFKNMFSGSLSFLCQISDEHF------RYLDLSDNLLSGELPNCS 591
           G      L  +  L L  N      + L  +    F        L L    L  EL    
Sbjct: 78  G------LALLEQLDLSDN------AQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGL 124

Query: 592 -KNWQKLTVLNLANNKFSGKIPDSMDFNCMMLS-LHLRNNSFIGELPSSV-KSFTQLTVL 648
            +    L  L L +N     +PD    +   L+ L L  N  I  +P    +    L  L
Sbjct: 125 FRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRL 182

Query: 649 DLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV-CHLQRIQVLDLSQN 702
            L  N+++  +       L  L+ L L +NN    +P +    L+ +Q L L+ N
Sbjct: 183 LLHQNRVAH-VHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 36/188 (19%), Positives = 56/188 (29%), Gaps = 52/188 (27%)

Query: 634 ELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV-CHLQ 692
            +P  +        + L  N+IS  +PA    +  +L +L L SN    R+       L 
Sbjct: 25  AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLA 80

Query: 693 RIQVLDLSQNNISGTVP-QCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSE 751
            ++ LDLS N    +V     + L  +                                 
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGRLH-------------------------------- 108

Query: 752 YRNTLGLVKSIDLSSNRLYGEIPEVT--SLVGLISLNLSKNSLTGPIPSKI-GGLTLLNS 808
                    ++ L    L  E+       L  L  L L  N+L   +P      L  L  
Sbjct: 109 ---------TLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTH 157

Query: 809 LDLSKNML 816
           L L  N +
Sbjct: 158 LFLHGNRI 165

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  110 bits (278), Expect = 2e-26
 Identities = 62/300 (20%), Positives = 101/300 (33%), Gaps = 40/300 (13%)

Query: 141 NIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVN 200
            ++ LDLSN   T      L    +LQ L L+ N             ++ +E        
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN------------GINTIEE------- 93

Query: 201 LGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVY 260
                      S L SL  L L    L ++   SS  F   S SL  L+L  N       
Sbjct: 94  --------DSFSSLGSLEHLDLSYNYLSNL---SSSWFKPLS-SLTFLNLLGNPYKTLGE 141

Query: 261 YWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLR 319
             LF+  + L  L + +      I    F   T L  L++  + L S    S +++  + 
Sbjct: 142 TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS 201

Query: 320 ALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNM 379
            L         LL       S+     L    L++      L      S +K+    +  
Sbjct: 202 HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS-ELSTGETNSLIKKFTFRN-- 258

Query: 380 LDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
              + + +      + K + Q+S L  L+ + N LK  + +     L+ L  + L  N  
Sbjct: 259 ---VKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 50/261 (19%), Positives = 98/261 (37%), Gaps = 20/261 (7%)

Query: 574 RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIG 633
           + LDLS+N ++    +  +    L  L L +N  +    DS      +  L L  N  + 
Sbjct: 55  KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LS 113

Query: 634 ELPSSV-KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV-CHL 691
            L SS  K  + LT L+L  N    +    +   L  L +L + + +   ++  +    L
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173

Query: 692 QRIQVLDLSQNNISGTVPQCLNNLTAMTA-NKSSNAMIRYP---------LRTDYYNDHA 741
             ++ L++  +++    P+ L ++  ++         I            +      D  
Sbjct: 174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233

Query: 742 LLVWKRKDSEYRNTLGLVKS-----IDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPI 796
           L  +   +     T  L+K      + ++   L+  +  +  + GL+ L  S+N L   +
Sbjct: 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-V 292

Query: 797 PSKI-GGLTLLNSLDLSKNML 816
           P  I   LT L  + L  N  
Sbjct: 293 PDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 67.5 bits (165), Expect = 4e-12
 Identities = 57/391 (14%), Positives = 109/391 (27%), Gaps = 121/391 (30%)

Query: 299 DLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLR 358
             S+  L S+P        +++L   +N +T +  +   +  N     L+ L L SN + 
Sbjct: 37  KGSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVN-----LQALVLTSNGIN 89

Query: 359 GSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMI 418
            ++ +   FSSL  L         L L+ N  +                          +
Sbjct: 90  -TIEE-DSFSSLGSLE-------HLDLSYNYLS-------------------------NL 115

Query: 419 TEAHLSNLSRLTYLDLSHNSL-ILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKF 477
           + +    LS LT+L+L  N    L   S +    +L I+R+G                  
Sbjct: 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT-------------- 161

Query: 478 SELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSF 537
                     +      F  L   L  L +  +                         S 
Sbjct: 162 ---------FTKIQRKDFAGL-TFLEELEIDASDLQ-----------------SYEPKSL 194

Query: 538 EGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKL 597
           +         + ++                       +L L        L         +
Sbjct: 195 KS--------IQNV----------------------SHLILHMKQHILLLEIFVDVTSSV 224

Query: 598 TVLNLANNKFSGKIPDSM---DFNCMMLSLHLRNNSF----IGELPSSVKSFTQLTVLDL 650
             L L +          +   + N ++     RN       + ++   +   + L  L+ 
Sbjct: 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEF 284

Query: 651 GHNKISGIIPAWIGDSLPDLVVLSLRSNNFH 681
             N++   +P  I D L  L  + L +N + 
Sbjct: 285 SRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 42/260 (16%), Positives = 77/260 (29%), Gaps = 54/260 (20%)

Query: 479 ELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFE 538
            LD+S   I+    +       NL  L L+ N                     +  +SF 
Sbjct: 56  SLDLSNNRITYISNSDLQRC-VNLQALVLTSNGIN-----------------TIEEDSFS 97

Query: 539 GPIPPIPLT-VTSLILFKNMFSGSLSFLCQISDEHF------RYLDLSDNLLSGELPNCS 591
                  L  +  L L  N        L  +S   F       +L+L  N     L   S
Sbjct: 98  S------LGSLEHLDLSYNY-------LSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETS 143

Query: 592 --KNWQKLTVLNLANNKFSGKIPDSMDFNCMML-SLHLRNNSFIGELPSSV-KSFTQLTV 647
              +  KL +L + N     KI          L  L +  +  +        KS   ++ 
Sbjct: 144 LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSLKSIQNVSH 202

Query: 648 LDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVC--------HLQRIQVLDL 699
           L L   +   ++     D    +  L LR  +       ++              + + +
Sbjct: 203 LILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261

Query: 700 SQNNISGTVPQCLNNLTAMT 719
           +  ++   V + LN ++ + 
Sbjct: 262 TDESLF-QVMKLLNQISGLL 280

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  106 bits (267), Expect = 3e-25
 Identities = 53/284 (18%), Positives = 105/284 (36%), Gaps = 24/284 (8%)

Query: 108 SSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQ 167
                 L++L+ L +  N        AF   L  +  L LS       +P ++    +LQ
Sbjct: 69  DGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLYLSKNQLK-ELPEKM--PKTLQ 124

Query: 168 YLDLSFN-FDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCN 226
            L +  N    + K +   + L+ +  V L    L  +         +  L+ +++   N
Sbjct: 125 ELRVHENEITKVRKSV--FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182

Query: 227 LPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPD 286
           + ++         +    L  L L  N ++  V        ++L  L LS N +   + +
Sbjct: 183 ITTI---PQGLPPS----LTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISA-VDN 233

Query: 287 SAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDT 346
            +  N   L  L L+NN+LV VP    +   ++ +Y  +NN++ +  N F      ++  
Sbjct: 234 GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293

Query: 347 -LEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNR 389
               + L SN ++      + F  +            + L N +
Sbjct: 294 SYSGVSLFSNPVQYWEIQPSTFRCVYVRA-------AVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  101 bits (254), Expect = 1e-23
 Identities = 75/397 (18%), Positives = 136/397 (34%), Gaps = 109/397 (27%)

Query: 269 SLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRALYQDSNN 327
            L  +  S   L+  +P      P   + LDL NN++  +    F+NL  L  L   +N 
Sbjct: 32  HLRVVQCSDLGLEK-VPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 328 LTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNN 387
           ++ + P  F  L       LE L L+ N L+  LP+  +  +L+EL +++N +  +    
Sbjct: 88  ISKISPGAFAPLVK-----LERLYLSKNQLK-ELPE-KMPKTLQELRVHENEITKV--RK 138

Query: 388 NRFTGTLTKSIGQLSQLELLDVASNSLK-GMITEAHLSNLSRLTYLDLSHNSLILNFGSG 446
           + F G        L+Q+ ++++ +N LK   I       + +L+Y+ ++  ++       
Sbjct: 139 SVFNG--------LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI------T 184

Query: 447 WVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLN 506
            +P                  P  L       EL +   +I+         L  NL  L 
Sbjct: 185 TIP---------------QGLPPSLT------ELHLDGNKITKVDAASLKGL-NNLAKLG 222

Query: 507 LSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLC 566
           LS N  +                  +   S                            L 
Sbjct: 223 LSFNSIS-----------------AVDNGSLAN----------------------TPHL- 242

Query: 567 QISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLS--- 623
                  R L L++N L  ++P    + + + V+ L NN  S  I  +        +   
Sbjct: 243 -------RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKA 293

Query: 624 ----LHLRNNSF-IGELPSSV-KSFTQLTVLDLGHNK 654
               + L +N     E+  S  +       + LG+ K
Sbjct: 294 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 72.3 bits (178), Expect = 9e-14
 Identities = 49/249 (19%), Positives = 93/249 (37%), Gaps = 34/249 (13%)

Query: 574 RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCM--MLSLHLRNNSF 631
             LDL +N ++       KN + L  L L NNK S KI     F  +  +  L+L  N  
Sbjct: 55  ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGA-FAPLVKLERLYLSKNQ- 111

Query: 632 IGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFH-GRVPVQV-C 689
           + ELP  +     L  L +  N+I+  +   + + L  ++V+ L +N      +      
Sbjct: 112 LKELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 690 HLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKD 749
            ++++  + ++  NI+        +LT               L  D      +      D
Sbjct: 169 GMKKLSYIRIADTNITTIPQGLPPSLTE--------------LHLDGNKITKV------D 208

Query: 750 SEYRNTLGLVKSIDLSSNRLYGEIPEVT--SLVGLISLNLSKNSLTGPIPSKIGGLTLLN 807
           +     L  +  + LS N +   +   +  +   L  L+L+ N L   +P  +     + 
Sbjct: 209 AASLKGLNNLAKLGLSFNSI-SAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQ 266

Query: 808 SLDLSKNML 816
            + L  N +
Sbjct: 267 VVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 72.0 bits (177), Expect = 1e-13
 Identities = 65/329 (19%), Positives = 109/329 (33%), Gaps = 88/329 (26%)

Query: 380 LDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
           L V+  ++      + K +       LLD+ +N +   I +    NL  L  L L +N  
Sbjct: 33  LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINN-- 86

Query: 440 ILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLS 499
                                                         +IS   P  F  L 
Sbjct: 87  ----------------------------------------------KISKISPGAFAPL- 99

Query: 500 PNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFS 559
             L  L LS N    +   + +       E+ +  N                 + K++F+
Sbjct: 100 VKLERLYLSKNQLKELPEKMPKTLQ----ELRVHENEIT-------------KVRKSVFN 142

Query: 560 GSLSFLCQISDEHFRYLDLSDNLLSGEL--PNCSKNWQKLTVLNLANNKFSGKIPDSMDF 617
           G L+ +          ++L  N L          +  +KL+ + +A+   +  IP  +  
Sbjct: 143 G-LNQM--------IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPP 192

Query: 618 NCMMLSLHLRNNSFIGELPSSV-KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLR 676
           +     LHL  N  I ++ ++  K    L  L L  N IS +       + P L  L L 
Sbjct: 193 SLT--ELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAV-DNGSLANTPHLRELHLN 248

Query: 677 SNNFHGRVPVQVCHLQRIQVLDLSQNNIS 705
           +N    +VP  +   + IQV+ L  NNIS
Sbjct: 249 NNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 69.3 bits (170), Expect = 9e-13
 Identities = 53/293 (18%), Positives = 99/293 (33%), Gaps = 50/293 (17%)

Query: 541 IPP-IPLTVTSLILFKNMFSGSLSFLCQISDEHF------RYLDLSDNLLSGELPNCSKN 593
           +P  +P     L L  N  +       +I D  F        L L +N +S   P     
Sbjct: 46  VPKDLPPDTALLDLQNNKIT-------EIKDGDFKNLKNLHTLILINNKISKISPGAFAP 98

Query: 594 WQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSV-KSFTQLTVLDLGH 652
             KL  L L+ N+   ++P+ M        L +  N  I ++  SV     Q+ V++LG 
Sbjct: 99  LVKLERLYLSKNQLK-ELPEKMPKTLQ--ELRVHENE-ITKVRKSVFNGLNQMIVVELGT 154

Query: 653 NKI-SGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQC 711
           N + S  I       +  L  + +   N    +P  +     +  L L  N I+      
Sbjct: 155 NPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAAS 211

Query: 712 LNNLTAMTA-NKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLY 770
           L  L  +     S N++           + +L                ++ + L++N+L 
Sbjct: 212 LKGLNNLAKLGLSFNSISAVD-------NGSL-----------ANTPHLRELHLNNNKLV 253

Query: 771 GEIPEV-TSLVGLISLNLSKNSLTG------PIPSKIGGLTLLNSLDLSKNML 816
            ++P        +  + L  N+++         P         + + L  N +
Sbjct: 254 -KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 57/338 (16%), Positives = 107/338 (31%), Gaps = 77/338 (22%)

Query: 497 DLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPP--EIDLSANSFEGPIPP---IPLT-VTS 550
           DL P+   L+L +N  T  + D    F        + L  N     I P    PL  +  
Sbjct: 49  DLPPDTALLDLQNNKIT-EIKDGD--FKNLKNLHTLILINNKISK-ISPGAFAPLVKLER 104

Query: 551 LILFKNMFSGSLSFLCQISDEHF---RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKF 607
           L L KN        L ++ ++     + L + +N ++    +      ++ V+ L  N  
Sbjct: 105 LYLSKNQ-------LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 157

Query: 608 -SGKIPDSMDFNCMMLS-LHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGD 665
            S  I +        LS + + + + I  +P  +     LT L L  NKI+  + A    
Sbjct: 158 KSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGL--PPSLTELHLDGNKIT-KVDAASLK 213

Query: 666 SLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSN 725
            L +L  L L  N+        + +   ++ L L+ N +   VP  L +   +       
Sbjct: 214 GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI------- 265

Query: 726 AMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRL-------YGEIPEVTS 778
                                             + + L +N +       +      T 
Sbjct: 266 ----------------------------------QVVYLHNNNISAIGSNDFCPPGYNTK 291

Query: 779 LVGLISLNLSKNSLT-GPIPSKI-GGLTLLNSLDLSKN 814
                 ++L  N +    I       + +  ++ L   
Sbjct: 292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 51/222 (22%), Positives = 84/222 (37%), Gaps = 28/222 (12%)

Query: 597 LTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSV-KSFTQLTVLDLGHNKI 655
           L V+  ++     K+P  +  +     L L+NN  I E+     K+   L  L L +NKI
Sbjct: 33  LRVVQCSDLGLE-KVPKDLPPDTA--LLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKI 88

Query: 656 SGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNL 715
           S  I       L  L  L L  N     +P ++   + +Q L + +N I+       N L
Sbjct: 89  S-KISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGL 144

Query: 716 TAMTA-NKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP 774
             M      +N     PL++    + A              +  +  I ++   +   IP
Sbjct: 145 NQMIVVELGTN-----PLKSSGIENGAF-----------QGMKKLSYIRIADTNI-TTIP 187

Query: 775 EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
           +      L  L+L  N +T    + + GL  L  L LS N +
Sbjct: 188 QGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  102 bits (257), Expect = 6e-24
 Identities = 54/287 (18%), Positives = 101/287 (35%), Gaps = 31/287 (10%)

Query: 108 SSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQ 167
                GLQHL  L +  N        AF   L+ ++ L +S       +P  L   +SL 
Sbjct: 71  KDDFKGLQHLYALVLVNNKISKIHEKAFSP-LRKLQKLYISKNHLV-EIPPNL--PSSLV 126

Query: 168 YLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGE---ATDWLQVVS-QLPSLTELQLR 223
            L +  N      ++  + +  F     +N + +G         +  +     L  L++ 
Sbjct: 127 ELRIHDN------RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRIS 180

Query: 224 GCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGP 283
              L  +         +   +L  L L  N +  ++        S L  L L  N+++  
Sbjct: 181 EAKLTGI-------PKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRM- 231

Query: 284 IPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCS 343
           I + +     +L  L L NN+L  VP    +L  L+ +Y  +NN+T +  N F  +    
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV 291

Query: 344 RDT-LEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNR 389
           +      + L +N +         F  + +          +   N +
Sbjct: 292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRL-------AIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  100 bits (251), Expect = 3e-23
 Identities = 64/360 (17%), Positives = 115/360 (31%), Gaps = 101/360 (28%)

Query: 267 SSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSV-PKSFRNLCRLRALYQDS 325
           S     LDL +N +   +    F     L  L L NN++  +  K+F  L +L+ LY   
Sbjct: 53  SPDTTLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111

Query: 326 NNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITL--FSSLKELHLYDN----- 378
           N+L ++ PNL          +L  L+++ N +R  +P        ++  + +  N     
Sbjct: 112 NHLVEIPPNLP--------SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENS 162

Query: 379 ----------MLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSR 428
                      L+ L ++  + T            L  L +  N ++  I    L   S+
Sbjct: 163 GFEPGAFDGLKLNYLRISEAKLT---GIPKDLPETLNELHLDHNKIQ-AIELEDLLRYSK 218

Query: 429 LTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEIS 488
           L  L L HN              ++ +I  G+    P     L+      EL +   ++S
Sbjct: 219 LYRLGLGHN--------------QIRMIENGSLSFLPT----LR------ELHLDNNKLS 254

Query: 489 DTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTV 548
             VP    DL   L  + L  N+ T                  +  N F      +    
Sbjct: 255 -RVPAGLPDL-KLLQVVYLHTNNIT-----------------KVGVNDFCPVGFGVKRA- 294

Query: 549 TSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLS-GELPNCS-KNWQKLTVLNLANNK 606
                                  ++  + L +N +   E+   + +       +   N K
Sbjct: 295 -----------------------YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 97.4 bits (243), Expect = 4e-22
 Identities = 76/396 (19%), Positives = 126/396 (31%), Gaps = 108/396 (27%)

Query: 269 SLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRALYQDSNN 327
            L  +  S   L+  +P          + LDL NN +  + K  F+ L  L AL   +N 
Sbjct: 34  HLRVVQCSDLGLKA-VPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK 89

Query: 328 LTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNN 387
           ++ +    F  L       L+ L ++ N L   +P   L SSL EL ++DN +  +    
Sbjct: 90  ISKIHEKAFSPLRK-----LQKLYISKNHLV-EIPP-NLPSSLVELRIHDNRIRKV--PK 140

Query: 388 NRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGW 447
             F+G        L  +  +++  N L+    E    +  +L YL +S   L        
Sbjct: 141 GVFSG--------LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG------ 186

Query: 448 VPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNL 507
           +P                  P+ L       EL +   +I              LY L L
Sbjct: 187 IP---------------KDLPETLN------ELHLDHNKIQAIELEDLLRY-SKLYRLGL 224

Query: 508 SHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQ 567
            HN                     +   S           + +L                
Sbjct: 225 GHNQIR-----------------MIENGSLSF--------LPTL---------------- 243

Query: 568 ISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDS----MDFNCMMLS 623
                 R L L +N LS  +P    + + L V+ L  N  + K+  +    + F      
Sbjct: 244 ------RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAY 295

Query: 624 L---HLRNN--SFIGELPSSVKSFTQLTVLDLGHNK 654
                L NN   +    P++ +  T    +  G+ K
Sbjct: 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 74.7 bits (184), Expect = 2e-14
 Identities = 69/328 (21%), Positives = 114/328 (34%), Gaps = 87/328 (26%)

Query: 380 LDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
           L V+  ++      + K I       LLD+ +N +   + +     L  L  L L +N  
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNN-- 88

Query: 440 ILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLS 499
                       +++ I   A                FS L                   
Sbjct: 89  ------------KISKIHEKA----------------FSPL------------------- 101

Query: 500 PNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFS 559
             L  L +S NH   + P+L         E+ +  N                 + K +FS
Sbjct: 102 RKLQKLYISKNHLVEIPPNLPSSLV----ELRIHDNRIR-------------KVPKGVFS 144

Query: 560 GSLSFLCQISDEHFRYLDLSDNLL-SGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFN 618
           G L  +          +++  N L +      + +  KL  L ++  K +  IP  +   
Sbjct: 145 G-LRNM--------NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPET 194

Query: 619 CMMLSLHLRNNSFIGELPSSV-KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRS 677
             +  LHL +N  I  +       +++L  L LGHN+I  +I       LP L  L L +
Sbjct: 195 --LNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDN 250

Query: 678 NNFHGRVPVQVCHLQRIQVLDLSQNNIS 705
           N    RVP  +  L+ +QV+ L  NNI+
Sbjct: 251 NKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 49/247 (19%), Positives = 89/247 (36%), Gaps = 31/247 (12%)

Query: 574 RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMML-SLHLRNNSFI 632
             LDL +N +S    +  K  Q L  L L NNK S KI +        L  L++  N  +
Sbjct: 57  TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNH-L 114

Query: 633 GELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNF-HGRVPVQVCHL 691
            E+P ++   + L  L +  N+I   +P  +   L ++  + +  N   +          
Sbjct: 115 VEIPPNL--PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171

Query: 692 QRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSE 751
            ++  L +S+  ++G        L  +      N +              L         
Sbjct: 172 LKLNYLRISEAKLTGIPKDLPETLNELHL--DHNKIQAIE-------LEDL--------- 213

Query: 752 YRNTLGLVKSIDLSSNRLYGEIPEVT--SLVGLISLNLSKNSLTGPIPSKIGGLTLLNSL 809
                  +  + L  N++   I   +   L  L  L+L  N L+  +P+ +  L LL  +
Sbjct: 214 --LRYSKLYRLGLGHNQI-RMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVV 269

Query: 810 DLSKNML 816
            L  N +
Sbjct: 270 YLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 66.2 bits (162), Expect = 9e-12
 Identities = 51/339 (15%), Positives = 94/339 (27%), Gaps = 80/339 (23%)

Query: 497 DLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPP--EIDLSANSFEGPIPP---IPLT-VTS 550
           ++SP+   L+L +N  +  L      F        + L  N     I      PL  +  
Sbjct: 51  EISPDTTLLDLQNNDIS-ELRKDD--FKGLQHLYALVLVNNKISK-IHEKAFSPLRKLQK 106

Query: 551 LILFKNMFSGSLSFLCQISDEHF---RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKF 607
           L + KN        L +I          L + DN +           + +  + +  N  
Sbjct: 107 LYISKNH-------LVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159

Query: 608 SGKIPDSMDFNCMMLS-LHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDS 666
                +   F+ + L+ L +     +  +P  +     L  L L HNKI   I       
Sbjct: 160 ENSGFEPGAFDGLKLNYLRISEAK-LTGIPKDL--PETLNELHLDHNKIQ-AIELEDLLR 215

Query: 667 LPDLVVLSLRSNNFHGRVPVQVC-HLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSN 725
              L  L L  N     +       L  ++ L L  N +S  VP  L +L  +       
Sbjct: 216 YSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLL------- 266

Query: 726 AMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPE--------VT 777
                                             + + L +N +  ++            
Sbjct: 267 ----------------------------------QVVYLHTNNI-TKVGVNDFCPVGFGV 291

Query: 778 SLVGLISLNLSKNSLT-GPIPSKI-GGLTLLNSLDLSKN 814
                  ++L  N +    +       +T   ++     
Sbjct: 292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 43/222 (19%), Positives = 70/222 (31%), Gaps = 29/222 (13%)

Query: 597 LTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSV-KSFTQLTVLDLGHNKI 655
           L V+  ++      +P  +  +     L L+NN  I EL     K    L  L L +NKI
Sbjct: 35  LRVVQCSDLGLK-AVPKEISPDTT--LLDLQNND-ISELRKDDFKGLQHLYALVLVNNKI 90

Query: 656 SGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNL 715
           S  I       L  L  L +  N+    +P  +     +  L +  N I        + L
Sbjct: 91  S-KIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGL 146

Query: 716 TAMTA-NKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP 774
             M       N +         ++   L                   + +S  +L   IP
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLKL-----------------NYLRISEAKL-TGIP 188

Query: 775 EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
           +      L  L+L  N +       +   + L  L L  N +
Sbjct: 189 K-DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  104 bits (260), Expect = 3e-23
 Identities = 93/558 (16%), Positives = 182/558 (32%), Gaps = 88/558 (15%)

Query: 266 SSSSLVYLDLSSNKLQGPIPDSAFPN-PTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQ 323
           S+     +D S+  L          + P     L LS N +  +       L  LR L  
Sbjct: 29  SNELESMVDYSNRNLT-----HVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRL 83

Query: 324 DSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVL 383
             N +  L  ++FL   +     LE L ++ N L+ ++    + +SL+ L L  N  DVL
Sbjct: 84  SHNRIRSLDFHVFLFNQD-----LEYLDVSHNRLQ-NISCCPM-ASLRHLDLSFNDFDVL 136

Query: 384 YLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNF 443
                     + K  G L++L  L +++   +    +  L  ++ L    +  + +  + 
Sbjct: 137 ---------PVCKEFGNLTKLTFLGLSAAKFR----QLDLLPVAHLHLSCILLDLVSYHI 183

Query: 444 GSGWVPSFE---LNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSP 500
             G   S +     ++ L          +   + N    L +S  +++D           
Sbjct: 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS 243

Query: 501 NLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSG 560
            L       N     +    +               +        L + +L + + +   
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY--------LNIYNLTITERIDRE 295

Query: 561 SLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCM 620
             ++  + + +      + + +           + ++ +  L+ +  +  I      +  
Sbjct: 296 EFTY-SETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD-TPFIHMVCPPSPS 353

Query: 621 ML-SLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGI-IPAWIGDSLPDLVVLSLRSN 678
               L+   N F   +     +  +L  L L  N +      A +  ++  L  L +  N
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413

Query: 679 NFHGRVPVQVCHLQR-IQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYY 737
           + +     + C     I VL+LS N ++G+V +CL                         
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP------------------------ 449

Query: 738 NDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPE-VTSLVGLISLNLSKNSLTGPI 796
                                VK +DL +NR+   IP+ VT L  L  LN++ N L    
Sbjct: 450 -------------------PKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKSVP 489

Query: 797 PSKIGGLTLLNSLDLSKN 814
                 LT L  + L  N
Sbjct: 490 DGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 98.4 bits (245), Expect = 1e-21
 Identities = 92/545 (16%), Positives = 174/545 (31%), Gaps = 78/545 (14%)

Query: 145 LDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEA 204
           +D SN   T  VP         + L LS N             +S L             
Sbjct: 36  VDYSNRNLT-HVP--KDLPPRTKALSLSQN------------SISELRM----------- 69

Query: 205 TDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLF 264
                 +S L  L  L+L    + S+     +   +    L +LD+S N + N     + 
Sbjct: 70  ----PDISFLSELRVLRLSHNRIRSLDFHVFLFNQD----LEYLDVSHNRLQNISCCPM- 120

Query: 265 NSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQD 324
              +SL +LDLS N          F N T L++L LS  +   +      +  L      
Sbjct: 121 ---ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD--LLPVAHLHLSCIL 175

Query: 325 SNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLY 384
            + ++  +     +       T+  L  + N L     ++   ++L  L L +  L+   
Sbjct: 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM-SVNALGHLQLSNIKLNDEN 234

Query: 385 LNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFG 444
                   +       L  + L  +   + K  +          + YL++ + ++     
Sbjct: 235 CQRLMTFLSELTRGPTLLNVTLQHI-ETTWKCSVKLFQFFWPRPVEYLNIYNLTITER-- 291

Query: 445 SGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYY 504
                                +F              V       +    +   +  +  
Sbjct: 292 -----------------IDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA-EMNI 333

Query: 505 LNLSHN--HFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSL 562
             LS +   F  M+   S     +   ++ + N F   +     T+  L     +    L
Sbjct: 334 KMLSISDTPFIHMVCPPSPSSFTF---LNFTQNVFTDSVFQGCSTLKRLQTL-ILQRNGL 389

Query: 563 SFLCQISD-----EHFRYLDLSDNLLSGELPNCSKNW-QKLTVLNLANNKFSGKIPDSMD 616
               +++           LD+S N L+    + +  W + + VLNL++N  +G +   + 
Sbjct: 390 KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP 449

Query: 617 FNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLR 676
               +  L L NN  I  +P  V     L  L++  N++   +P  + D L  L  + L 
Sbjct: 450 PK--VKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLH 505

Query: 677 SNNFH 681
            N + 
Sbjct: 506 DNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 87.6 bits (217), Expect = 4e-18
 Identities = 63/300 (21%), Positives = 113/300 (37%), Gaps = 20/300 (6%)

Query: 62  HLSSWGNEDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQH--LNY 119
           HL     + + ++C +          G  T+LN+  +                    + Y
Sbjct: 222 HLQLSNIKLNDENCQRLMTFLSELTRG-PTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY 280

Query: 120 LNMKYNDFGGKQIPAFIG----SLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNF 175
           LN+       +           +LK++    + N  F             +    LS + 
Sbjct: 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS- 339

Query: 176 DMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSS 235
           D     +      S   ++   Q N+   +   Q  S L  L  L L+   L +      
Sbjct: 340 DTPFIHMVCPPSPSSFTFLNFTQ-NVFTDS-VFQGCSTLKRLQTLILQRNGLKNF--FKV 395

Query: 236 VSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSL 295
              + +  SL  LD+SLN +++  Y      + S++ L+LSSN L G +       P  +
Sbjct: 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL---PPKV 452

Query: 296 SYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSN 355
             LDL NN+++S+PK   +L  L+ L   SN L  +   +F +L++     L+ + L+ N
Sbjct: 453 KVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTS-----LQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 36/191 (18%), Positives = 59/191 (30%), Gaps = 25/191 (13%)

Query: 547 TVTSLILFKNMFSGSLSFLCQISDE---------------------HFRYLDLSDNLLSG 585
            +     F    +  +  +   S+E                       + L LS N +S 
Sbjct: 7   PIVGSFHFVCALALIVGSMTPFSNELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISE 66

Query: 586 ELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQL 645
                     +L VL L++N+          FN  +  L + +N  +  +         L
Sbjct: 67  LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCCP--MASL 123

Query: 646 TVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQV-LDLSQNNI 704
             LDL  N    +       +L  L  L L +  F     + V HL    + LDL   +I
Sbjct: 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHI 183

Query: 705 SGTVPQCLNNL 715
            G   + L   
Sbjct: 184 KGGETESLQIP 194

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 99.6 bits (249), Expect = 8e-23
 Identities = 58/358 (16%), Positives = 103/358 (28%), Gaps = 92/358 (25%)

Query: 96  QFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGG-KQIPAFIGSLK--NIRHLDLSNAGF 152
           Q++ +     N   S     + N   ++       K     +          L+L +   
Sbjct: 34  QWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPL 93

Query: 153 TGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVS 212
             + P Q   L+ LQ++ +          L  L                         + 
Sbjct: 94  P-QFPDQAFRLSHLQHMTIDAA------GLMELPD----------------------TMQ 124

Query: 213 QLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVY 272
           Q   L  L L    L ++             S+A L                   + L  
Sbjct: 125 QFAGLETLTLARNPLRAL-----------PASIASL-------------------NRLRE 154

Query: 273 LDLSSNKLQGPIPDS--------AFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQD 324
           L + +      +P+               +L  L L    + S+P S  NL  L++L   
Sbjct: 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIR 214

Query: 325 SNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPD-ITLFSSLKELHLYDNMLDVL 383
           ++ L+  L      L       LE L L       + P      + LK L L D      
Sbjct: 215 NSPLSA-LGPAIHHLPK-----LEELDLRGCTALRNYPPIFGGRAPLKRLILKD------ 262

Query: 384 YLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITE--AHLSNLSRLTYLDLSHNSL 439
               +    TL   I +L+QLE LD+        ++   + ++ L     + +  +  
Sbjct: 263 ---CSNLL-TLPLDIHRLTQLEKLDLRGCV---NLSRLPSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 99.2 bits (248), Expect = 9e-23
 Identities = 55/324 (16%), Positives = 91/324 (28%), Gaps = 58/324 (17%)

Query: 135 FIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYV 194
                    +L    +         L         D +             +  +  +  
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRN-----RWHSAWRQANSNNPQIE 61

Query: 195 RLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLND 254
                 L    D L+  +  P    L+LR   LP                   L      
Sbjct: 62  TRTGRALKATADLLE-DATQPGRVALELRSVPLPQF-----------PDQAFRL------ 103

Query: 255 VSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRN 314
                        S L ++ + +  L   +PD+       L  L L+ N L ++P S  +
Sbjct: 104 -------------SHLQHMTIDAAGLME-LPDT-MQQFAGLETLTLARNPLRALPASIAS 148

Query: 315 LCRLRALYQDSNNLTDLLPNLFLKLSNCSRDT----LEILQLNSNMLRGSLPD-ITLFSS 369
           L RLR L   +      LP                 L+ L+L    +R SLP  I    +
Sbjct: 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQN 207

Query: 370 LKELHLYDN-------------MLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKG 416
           LK L + ++              L+ L L             G  + L+ L +   S   
Sbjct: 208 LKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267

Query: 417 MITEAHLSNLSRLTYLDLSHNSLI 440
            +    +  L++L  LDL     +
Sbjct: 268 TLPLD-IHRLTQLEKLDLRGCVNL 290

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 96.6 bits (241), Expect = 6e-22
 Identities = 57/400 (14%), Positives = 104/400 (26%), Gaps = 98/400 (24%)

Query: 267 SSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSN 326
           SS    L    +    P  D      +       ++           N    +   +   
Sbjct: 11  SSGRENLYFQGSTALRPYHDVL----SQWQRHYNADRNRWHSAWRQANSNNPQIETRTGR 66

Query: 327 NLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPD-ITLFSSLKELHLYDNMLDVLYL 385
            L      L     + ++     L+L S  L    PD     S L+ + +    L     
Sbjct: 67  ALKATADLL----EDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM---- 117

Query: 386 NNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLI----L 441
                   L  ++ Q + LE L +A N L+ +     +++L+RL  L +     +     
Sbjct: 118 -------ELPDTMQQFAGLETLTLARNPLRALPAS--IASLNRLRELSIRACPELTELPE 168

Query: 442 NFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPN 501
              S         ++ L                     L +    I  ++P    +L  N
Sbjct: 169 PLASTDASGEHQGLVNL-------------------QSLRLEWTGIR-SLPASIANLQ-N 207

Query: 502 LYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGS 561
           L  L + ++  + +            P I                               
Sbjct: 208 LKSLKIRNSPLSAL-----------GPAI-----------------------------HH 227

Query: 562 LSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMM 621
           L  L          LDL         P        L  L L +      +P  +      
Sbjct: 228 LPKL--------EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH-RLTQ 278

Query: 622 L-SLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIP 660
           L  L LR    +  LPS +       ++ +  +  + +  
Sbjct: 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 90.0 bits (224), Expect = 1e-19
 Identities = 54/390 (13%), Positives = 106/390 (27%), Gaps = 90/390 (23%)

Query: 291 NPTSLSYLDLSN-NQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEI 349
           + +    L       L           R     ++  +      N          +  +I
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS---------NNPQI 60

Query: 350 LQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDV 409
                  L+ +   +   +              L L +            +LS L+ + +
Sbjct: 61  ETRTGRALKATADLLEDATQPG--------RVALELRSVPLP-QFPDQAFRLSHLQHMTI 111

Query: 410 ASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPK 469
            +  L  +     +   + L  L L+ N L        +P+       + +  +  +   
Sbjct: 112 DAAGLMELPDT--MQQFAGLETLTLARNPLRA------LPAS------IASLNRLREL-- 155

Query: 470 WLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPE 529
            ++   + +EL      ++ T  +       NL  L L                 + P  
Sbjct: 156 SIRACPELTELP---EPLASTDASGEHQGLVNLQSLRLEWT-----------GIRSLPAS 201

Query: 530 IDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPN 589
           I                              +L  L        + L + ++ LS  L  
Sbjct: 202 I-----------------------------ANLQNL--------KSLKIRNSPLS-ALGP 223

Query: 590 CSKNWQKLTVLNLANNKFSGKIPDSMDFNCMML-SLHLRNNSFIGELPSSVKSFTQLTVL 648
              +  KL  L+L         P         L  L L++ S +  LP  +   TQL  L
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIF-GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282

Query: 649 DLGHNKISGIIPAWIGDSLPDLVVLSLRSN 678
           DL        +P+ I   LP   ++ +  +
Sbjct: 283 DLRGCVNLSRLPSLIA-QLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.5 bits (215), Expect = 2e-18
 Identities = 57/373 (15%), Positives = 99/373 (26%), Gaps = 71/373 (19%)

Query: 346 TLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLE 405
             E L    +       D      L +           Y  +     +  +     +  +
Sbjct: 13  GRENLYFQGSTALRPYHD-----VLSQWQR-------HYNADRNRWHSAWR-QANSNNPQ 59

Query: 406 LLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGP 465
           +      +LK        +       L+L    L                          
Sbjct: 60  IETRTGRALKATADLLEDATQPGRVALELRSVPLP------------------------- 94

Query: 466 QFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFT------GMLPDL 519
           QFP      +    + + AA +   +P+     +  L  L L+ N           L  L
Sbjct: 95  QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA-GLETLTLARNPLRALPASIASLNRL 152

Query: 520 SQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLS 579
                    E+ + A      +P          L     SG    L  +     + L L 
Sbjct: 153 R--------ELSIRACPELTELPEP--------LASTDASGEHQGLVNL-----QSLRLE 191

Query: 580 DNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSV 639
              +   LP    N Q L  L + N+  S  +  ++     +  L LR  + +   P   
Sbjct: 192 WTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIF 249

Query: 640 KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDL 699
                L  L L        +P  I   L  L  L LR      R+P  +  L    ++ +
Sbjct: 250 GGRAPLKRLILKDCSNLLTLPLDIH-RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308

Query: 700 SQNNISGTVPQCL 712
              ++   + Q  
Sbjct: 309 P-PHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 77.7 bits (192), Expect = 2e-15
 Identities = 47/257 (18%), Positives = 82/257 (31%), Gaps = 58/257 (22%)

Query: 571 EHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMML-SLHLRNN 629
            H +++ +    L  ELP+  + +  L  L LA N     +P S+  +   L  L +R  
Sbjct: 104 SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNRLRELSIRAC 160

Query: 630 SFIGELPSSVKSF---------TQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNF 680
             + ELP  + S            L  L L    I  + PA I  +L +L  L +R++  
Sbjct: 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-PASIA-NLQNLKSLKIRNSPL 218

Query: 681 HGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDH 740
              +   + HL +++ LDL         P        +                      
Sbjct: 219 SA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL---------------------- 255

Query: 741 ALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSK 799
                              K + L        +P ++  L  L  L+L        +PS 
Sbjct: 256 -------------------KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296

Query: 800 IGGLTLLNSLDLSKNML 816
           I  L     + +  ++ 
Sbjct: 297 IAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 76.1 bits (188), Expect = 5e-15
 Identities = 38/238 (15%), Positives = 68/238 (28%), Gaps = 36/238 (15%)

Query: 114 LQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSF 173
           L HL ++ +        ++P  +     +  L L+       +P  + +L  L+ L +  
Sbjct: 103 LSHLQHMTIDAAGL--MELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159

Query: 174 NFDMLS--------KKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGC 225
             ++                  L  L+ +RL    +      +   + L +L  L++R  
Sbjct: 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASI---ANLQNLKSLKIRNS 216

Query: 226 N---LPSVIASSSVSFSNSSRSLAHLDLS----LNDVSNSVYYWLFNSSSSLVYLDLSSN 278
               L   I             L  LDL     L +             + L  L L   
Sbjct: 217 PLSALGPAIHHLP--------KLEELDLRGCTALRNYPPIFGGR-----APLKRLILKDC 263

Query: 279 KLQGPIPDSAFPNPTSLSYLDLSNN-QLVSVPKSFRNLCRLRALYQDSNNLTDLLPNL 335
                +P       T L  LDL     L  +P     L     +    +    L  + 
Sbjct: 264 SNLLTLPLD-IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 73.4 bits (181), Expect = 3e-14
 Identities = 38/263 (14%), Positives = 75/263 (28%), Gaps = 60/263 (22%)

Query: 574 RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDS-----MDFNCMML------ 622
             L    +       +    WQ+    +      + +  +S            L      
Sbjct: 15  ENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADL 74

Query: 623 ----------SLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVV 672
                     +L LR+   + + P      + L  + +    +   +P  +      L  
Sbjct: 75  LEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-QFAGLET 131

Query: 673 LSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPL 732
           L+L  N     +P  +  L R++ L +        +P+ L +  A               
Sbjct: 132 LTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDA--------------- 175

Query: 733 RTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNS 791
                            S     L  ++S+ L    +   +P  + +L  L SL +  + 
Sbjct: 176 -----------------SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP 217

Query: 792 LTGPIPSKIGGLTLLNSLDLSKN 814
           L+  +   I  L  L  LDL   
Sbjct: 218 LSA-LGPAIHHLPKLEELDLRGC 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.5 bits (176), Expect = 1e-13
 Identities = 48/298 (16%), Positives = 89/298 (29%), Gaps = 62/298 (20%)

Query: 529 EIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELP 588
            +    ++    + P    ++      N          + ++ +   ++           
Sbjct: 16  NLYFQGST---ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATA 72

Query: 589 NCSKNWQ--KLTVLNLANNKFSGKIPDSMDFNCMML-SLHLRNNSFIGELPSSVKSFTQL 645
           +  ++        L L +     + PD   F    L  + +     + ELP +++ F  L
Sbjct: 73  DLLEDATQPGRVALELRSVPLP-QFPDQA-FRLSHLQHMTIDAAG-LMELPDTMQQFAGL 129

Query: 646 TVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVP---------VQVCHLQRIQV 696
             L L  N +   +PA I  SL  L  LS+R+      +P          +   L  +Q 
Sbjct: 130 ETLTLARNPLR-ALPASIA-SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187

Query: 697 LDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTL 756
           L L    I  ++P  + NL  +                                      
Sbjct: 188 LRLEWTGIR-SLPASIANLQNL-------------------------------------- 208

Query: 757 GLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKN 814
              KS+ + ++ L    P +  L  L  L+L   +     P   GG   L  L L   
Sbjct: 209 ---KSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 27/230 (11%), Positives = 53/230 (23%), Gaps = 58/230 (25%)

Query: 597 LTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKIS 656
              L    +       D +         H   +           +     +       + 
Sbjct: 14  RENLYFQGSTALRPYHDVLS----QWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALK 69

Query: 657 GIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLT 716
                    + P  V L LRS     + P Q   L  +Q + +    +   +P  +    
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA 127

Query: 717 AMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-E 775
            +                                         +++ L+ N L   +P  
Sbjct: 128 GL-----------------------------------------ETLTLARNPL-RALPAS 145

Query: 776 VTSLVGLISLNLSKNSLTGPIPSKIGGLTL---------LNSLDLSKNML 816
           + SL  L  L++        +P  +              L SL L    +
Sbjct: 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI 195

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 96.2 bits (240), Expect = 4e-22
 Identities = 59/191 (30%), Positives = 87/191 (45%), Gaps = 18/191 (9%)

Query: 248 LDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVS 307
           LDL  N +S S+    F+  + L  L L+ NKLQ  +P   F    +L  L +++N+L +
Sbjct: 42  LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQA 99

Query: 308 VPKS-FRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITL 366
           +P   F  L  L  L  D N L  L P +F  L+      L  L L  N L+ SLP   +
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK-----LTYLSLGYNELQ-SLPK-GV 152

Query: 367 FSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNL 426
           F  L         L  L L NN+       +  +L++L+ L + +N LK  + E    +L
Sbjct: 153 FDKLTS-------LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSL 204

Query: 427 SRLTYLDLSHN 437
            +L  L L  N
Sbjct: 205 EKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 85.0 bits (211), Expect = 2e-18
 Identities = 58/264 (21%), Positives = 96/264 (36%), Gaps = 77/264 (29%)

Query: 132 IPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFL 191
           IPA      + + LDL +   +         LT L+ L L+ N            +L  L
Sbjct: 35  IPA------DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN------------KLQTL 76

Query: 192 EYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLS 251
                             +  +L +L  L +    L ++                     
Sbjct: 77  P---------------AGIFKELKNLETLWVTDNKLQALPIG------------------ 103

Query: 252 LNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK- 310
                      +F+   +L  L L  N+L+  +P   F + T L+YL L  N+L S+PK 
Sbjct: 104 -----------VFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKG 151

Query: 311 SFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITL--FS 368
            F  L  L+ L   +N L  +    F KL+      L+ L+L++N L+  +P+       
Sbjct: 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTE-----LKTLKLDNNQLK-RVPEGAFDSLE 205

Query: 369 SLKELHLYDNMLD-----VLYLNN 387
            LK L L +N  D     ++Y+  
Sbjct: 206 KLKMLQLQENPWDCTCNGIIYMAK 229

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 81.6 bits (202), Expect = 3e-17
 Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 17/171 (9%)

Query: 243 RSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSN 302
             L  L L+ N +  ++   +F    +L  L ++ NKLQ  +P   F    +L+ L L  
Sbjct: 61  TKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDR 118

Query: 303 NQLVSVPKS-FRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSL 361
           NQL S+P   F +L +L  L    N L  L   +F KL++     L+ L+L +N L+  +
Sbjct: 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS-----LKELRLYNNQLK-RV 172

Query: 362 PDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASN 412
           P+   F  L E       L  L L+NN+       +   L +L++L +  N
Sbjct: 173 PE-GAFDKLTE-------LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 57/190 (30%), Positives = 82/190 (43%), Gaps = 28/190 (14%)

Query: 267 SSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVP-KSFRNLCRLRALYQDS 325
           +++   +D SS KL   IP +    P     LDL +N+L S+P K+F  L +LR LY + 
Sbjct: 15  NNNKNSVDCSSKKLTA-IPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND 70

Query: 326 NNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPD--ITLFSSLKELHLYDN----- 378
           N L  L   +F +L N     LE L +  N L+ +LP        +L EL L  N     
Sbjct: 71  NKLQTLPAGIFKELKN-----LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSL 124

Query: 379 ---------MLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRL 429
                     L  L L  N           +L+ L+ L + +N LK +   A    L+ L
Sbjct: 125 PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGA-FDKLTEL 183

Query: 430 TYLDLSHNSL 439
             L L +N L
Sbjct: 184 KTLKLDNNQL 193

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 54/197 (27%), Positives = 77/197 (39%), Gaps = 10/197 (5%)

Query: 527 PPEIDLSANSFEGPIPP-IPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSG 585
              +D S+      IP  IP     L L  N  S SL           R L L+DN L  
Sbjct: 18  KNSVDCSSKKLTA-IPSNIPADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQT 75

Query: 586 ELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMML-SLHLRNNSFIGELPSSV-KSFT 643
                 K  + L  L + +NK    +P  +    + L  L L  N  +  LP  V  S T
Sbjct: 76  LPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLT 133

Query: 644 QLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCH-LQRIQVLDLSQN 702
           +LT L LG+N++   +P  + D L  L  L L +N    RVP      L  ++ L L  N
Sbjct: 134 KLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNN 191

Query: 703 NISGTVPQCLNNLTAMT 719
            +        ++L  + 
Sbjct: 192 QLKRVPEGAFDSLEKLK 208

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 46/198 (23%), Positives = 68/198 (34%), Gaps = 49/198 (24%)

Query: 623 SLHLRNNSFIGELPSSV-KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFH 681
            L L++N  +  LPS      T+L +L L  NK+   +PA I   L +L  L +  N   
Sbjct: 41  KLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQ 98

Query: 682 GRVPVQV-CHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDH 740
             +P+ V   L  +  L L +N +    P+  ++LT +T                     
Sbjct: 99  -ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT--------------------- 136

Query: 741 ALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPE--VTSLVGLISLNLSKNSLTGPIPS 798
                                + L  N L   +P+     L  L  L L  N L      
Sbjct: 137 --------------------YLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175

Query: 799 KIGGLTLLNSLDLSKNML 816
               LT L +L L  N L
Sbjct: 176 AFDKLTELKTLKLDNNQL 193

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 41/192 (21%), Positives = 63/192 (32%), Gaps = 60/192 (31%)

Query: 113 GLQHLNYLNMKYNDFGGKQIPAFI-GSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDL 171
            L++L  L +  N    + +P  +   L N+  L L         P    +LT L YL L
Sbjct: 83  ELKNLETLWVTDNKL--QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL 140

Query: 172 SFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVI 231
            +N      +L+ L +  F                      +L SL EL+L    L  V 
Sbjct: 141 GYN------ELQSLPKGVF---------------------DKLTSLKELRLYNNQLKRVP 173

Query: 232 ASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPN 291
                                           F+  + L  L L +N+L+  +P+ AF +
Sbjct: 174 EG-----------------------------AFDKLTELKTLKLDNNQLKR-VPEGAFDS 203

Query: 292 PTSLSYLDLSNN 303
              L  L L  N
Sbjct: 204 LEKLKMLQLQEN 215

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  100 bits (250), Expect = 6e-22
 Identities = 77/412 (18%), Positives = 136/412 (33%), Gaps = 78/412 (18%)

Query: 334 NLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLD----------VL 383
            +  K+  C  +   +L +  + L  +LPD  L + +  L + DN L            L
Sbjct: 29  AVVQKMRACLNNGNAVLNVGESGLT-TLPD-CLPAHITTLVIPDNNLTSLPALPPELRTL 86

Query: 384 YLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNF 443
            ++ N+ T +L      L +L +       L         +  S L  L +  N L    
Sbjct: 87  EVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP--------ALPSGLCKLWIFGNQL---- 133

Query: 444 GSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLY 503
                                P  P  LQ      EL VS  +++ ++P         L 
Sbjct: 134 ------------------TSLPVLPPGLQ------ELSVSDNQLA-SLPALP----SELC 164

Query: 504 YLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLS 563
            L   +N  T  LP L         E+ +S N     +P +P  +  L  + N  +   +
Sbjct: 165 KLWAYNNQLT-SLPMLPSGLQ----ELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPA 218

Query: 564 FLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLS 623
               +     + L +S N L+  LP        L  L ++ N+ +  +P        +LS
Sbjct: 219 LPSGL-----KELIVSGNRLT-SLPVLPSE---LKELMVSGNRLT-SLPMLP---SGLLS 265

Query: 624 LHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGD--SLPDLVVLSLRSNNFH 681
           L +  N  +  LP S+   +  T ++L  N +S      + +  S P      +R +   
Sbjct: 266 LSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAG 324

Query: 682 GRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLR 733
              P +   L       L         P   +         +++A   +  R
Sbjct: 325 ASAPRETRALHLAAADWLVPAREGEPAP--ADRWHMFGQEDNADAFSLFLDR 374

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 98.8 bits (246), Expect = 2e-21
 Identities = 73/414 (17%), Positives = 124/414 (29%), Gaps = 100/414 (24%)

Query: 243 RSLAHLDLS---LNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLD 299
              A L++    L  + + +        + +  L +  N L   +P      P  L  L+
Sbjct: 40  NGNAVLNVGESGLTTLPDCL-------PAHITTLVIPDNNLTS-LPAL----PPELRTLE 87

Query: 300 LSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNL-FLKLSNCSRDT-------LEILQ 351
           +S NQL S+P     L  L        +L  L   L  L +      +       L+ L 
Sbjct: 88  VSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELS 147

Query: 352 LNSNMLRGSLPDITLFSSLKELHLYDNMLD----------VLYLNNNRFTGTLTKSIGQL 401
           ++ N L  SLP   L S L +L  Y+N L            L +++N+   +L     +L
Sbjct: 148 VSDNQLA-SLPA--LPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA-SLPTLPSEL 203

Query: 402 SQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGAC 461
            +L   +    SL         +  S L  L +S N L             L        
Sbjct: 204 YKLWAYNNRLTSLP--------ALPSGLKELIVSGNRLT-----------SL-------- 236

Query: 462 KQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFT------GM 515
              P  P  L+      EL VS   ++ ++P         L  L++  N  T        
Sbjct: 237 ---PVLPSELK------ELMVSGNRLT-SLPMLP----SGLLSLSVYRNQLTRLPESLIH 282

Query: 516 LPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRY 575
           L   +         ++L  N            +TS   +                E    
Sbjct: 283 LSSET--------TVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRAL 334

Query: 576 LDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNN 629
              + + L            +  +         G+  ++  F+  +  L    N
Sbjct: 335 HLAAADWLVPAREGEPAPADRWHMF--------GQEDNADAFSLFLDRLSETEN 380

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 96.9 bits (241), Expect = 6e-21
 Identities = 70/345 (20%), Positives = 109/345 (31%), Gaps = 56/345 (16%)

Query: 114 LQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSF 173
             H+  L +  N+     +PA    L+    L++S    T  +P     L  L       
Sbjct: 60  PAHITTLVIPDNNL--TSLPALPPELRT---LEVSGNQLT-SLPVLPPGLLELSIFSNPL 113

Query: 174 NFDMLSKKL-EWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIA 232
                   L    S L  L ++  NQ+          +    P L EL +    L     
Sbjct: 114 T------HLPALPSGLCKL-WIFGNQLT--------SLPVLPPGLQELSVSDNQL----- 153

Query: 233 SSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNP 292
               S       L  L    N +++     L    S L  L +S N+L   +P      P
Sbjct: 154 ---ASLPALPSELCKLWAYNNQLTS-----LPMLPSGLQELSVSDNQLAS-LPTL----P 200

Query: 293 TSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDL---LPNL-FLKLSNC------ 342
           + L  L   NN+L S+P        L+ L    N LT L      L  L +S        
Sbjct: 201 SELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLP 257

Query: 343 -SRDTLEILQLNSNMLRGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQ 400
                L  L +  N L   LP+ +   SS   ++L  N L    L   R   +     G 
Sbjct: 258 MLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGP 316

Query: 401 LSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGS 445
           + + ++   ++      +  A    L      + +       FG 
Sbjct: 317 IIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQ 361

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 95.7 bits (238), Expect = 1e-20
 Identities = 67/313 (21%), Positives = 102/313 (32%), Gaps = 68/313 (21%)

Query: 163 LTSLQYLDLSFNFDMLSKKLEWLSQ--LSFLEYVRLNQVNLGEATDWLQVVSQLPSLTEL 220
                 L++  +       L  L     + +  + +   NL        + +  P L  L
Sbjct: 39  NNGNAVLNVGES------GLTTLPDCLPAHITTLVIPDNNLTS------LPALPPELRTL 86

Query: 221 QLRGCNL---PSVIAS---------SSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSS 268
           ++ G  L   P +                       L  L +  N +++     L     
Sbjct: 87  EVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTS-----LPVLPP 141

Query: 269 SLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNL 328
            L  L +S N+L   +P      P+ L  L   NNQL S+P     L  L       N L
Sbjct: 142 GLQELSVSDNQLAS-LPAL----PSELCKLWAYNNQLTSLPMLPSGLQELSV---SDNQL 193

Query: 329 TDL---LPNL-FLKLSNC-------SRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYD 377
             L      L  L   N            L+ L ++ N L  SLP   L S LKEL +  
Sbjct: 194 ASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPV--LPSELKELMVSG 250

Query: 378 NMLD----------VLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLS 427
           N L            L +  N+ T  L +S+  LS    +++  N L    +E  L  L 
Sbjct: 251 NRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL----SERTLQALR 305

Query: 428 RLTYLDLSHNSLI 440
            +T        +I
Sbjct: 306 EITSAPGYSGPII 318

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 84.2 bits (208), Expect = 6e-17
 Identities = 72/370 (19%), Positives = 116/370 (31%), Gaps = 77/370 (20%)

Query: 292 PTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQ 351
               + L++  + L ++P        +  L    NNLT L               L  L+
Sbjct: 39  NNGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLTSLPALP---------PELRTLE 87

Query: 352 LNSNMLRGSLPD-ITLFSSLKELHLYDNMLD-------VLYLNNNRFTGTLTKSIGQLSQ 403
           ++ N L  SLP        L         L         L++  N+ T +L      L +
Sbjct: 88  VSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLPVLPPGLQE 145

Query: 404 LELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQ 463
           L + D    SL  +         S L  L   +N L          S  +    L     
Sbjct: 146 LSVSDNQLASLPALP--------SELCKLWAYNNQLT---------SLPMLPSGL----- 183

Query: 464 GPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKF 523
                          EL VS  +++ ++P     L   LY L   +N  T  LP L    
Sbjct: 184 --------------QELSVSDNQLA-SLP----TLPSELYKLWAYNNRLT-SLPALPSGL 223

Query: 524 TAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLL 583
                E+ +S N     +P +P  +  L++  N  + SL  L          L +  N L
Sbjct: 224 K----ELIVSGNRLTS-LPVLPSELKELMVSGNRLT-SLPMLPS----GLLSLSVYRNQL 273

Query: 584 SGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFT 643
           +  LP    +    T +NL  N  S     ++     + S    +   I    +   +  
Sbjct: 274 T-RLPESLIHLSSETTVNLEGNPLS---ERTLQALREITSAPGYSGPIIRFDMAGASAPR 329

Query: 644 QLTVLDLGHN 653
           +   L L   
Sbjct: 330 ETRALHLAAA 339

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 83.0 bits (205), Expect = 1e-16
 Identities = 55/322 (17%), Positives = 108/322 (33%), Gaps = 66/322 (20%)

Query: 498 LSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNM 557
           L+     LN+  +  T +   L    T     + +  N+    +P +P  + +L +  N 
Sbjct: 38  LNNGNAVLNVGESGLTTLPDCLPAHIT----TLVIPDNNLTS-LPALPPELRTLEVSGNQ 92

Query: 558 FS---GSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDS 614
            +        L                 L             L  L +  N+ +  +P  
Sbjct: 93  LTSLPVLPPGL-----LELSIFSNPLTHLPALPSG-------LCKLWIFGNQLT-SLPVL 139

Query: 615 MDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLS 674
                 +  L + +N  +  LP+     ++L  L   +N+++ +           L  LS
Sbjct: 140 PPG---LQELSVSDNQ-LASLPAL---PSELCKLWAYNNQLTSL-----PMLPSGLQELS 187

Query: 675 LRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRT 734
           +  N     +P     L +   L    N ++ ++P   + L  +    S N +   P   
Sbjct: 188 VSDNQLA-SLPTLPSELYK---LWAYNNRLT-SLPALPSGLKELIV--SGNRLTSLP--- 237

Query: 735 DYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTG 794
                                   +K + +S NRL   +P      GL+SL++ +N LT 
Sbjct: 238 -------------------VLPSELKELMVSGNRL-TSLPM--LPSGLLSLSVYRNQLTR 275

Query: 795 PIPSKIGGLTLLNSLDLSKNML 816
            +P  +  L+   +++L  N L
Sbjct: 276 -LPESLIHLSSETTVNLEGNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 79.9 bits (197), Expect = 1e-15
 Identities = 51/266 (19%), Positives = 90/266 (33%), Gaps = 49/266 (18%)

Query: 88  GHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDL 147
             +  L +   S   L  ++     GL  L+  +          +PA    L     L +
Sbjct: 81  PELRTLEV---SGNQLT-SLPVLPPGLLELSIFSNPLT-----HLPALPSGL---CKLWI 128

Query: 148 SNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDW 207
                T  +P     L  L    +S N   L+      S+L  L +   NQ+        
Sbjct: 129 FGNQLT-SLPVLPPGLQEL---SVSDNQ--LASLPALPSELCKL-WAYNNQLT------- 174

Query: 208 LQVVSQLPSLTELQLRGCNL---PSVIAS---------SSVSFSNSSRSLAHLDLSLNDV 255
             +      L EL +    L   P++ +             S       L  L +S N +
Sbjct: 175 -SLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRL 233

Query: 256 SNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNL 315
           ++     L    S L  L +S N+L   +P      P+ L  L +  NQL  +P+S  +L
Sbjct: 234 TS-----LPVLPSELKELMVSGNRLTS-LPML----PSGLLSLSVYRNQLTRLPESLIHL 283

Query: 316 CRLRALYQDSNNLTDLLPNLFLKLSN 341
                +  + N L++       ++++
Sbjct: 284 SSETTVNLEGNPLSERTLQALREITS 309

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 76.9 bits (189), Expect = 1e-14
 Identities = 62/341 (18%), Positives = 122/341 (35%), Gaps = 63/341 (18%)

Query: 475 NKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSA 534
           N  + L+V  + ++ T+P+    L  ++  L +  N+ T  LP L  +       +++S 
Sbjct: 40  NGNAVLNVGESGLT-TLPD---CLPAHITTLVIPDNNLTS-LPALPPELR----TLEVSG 90

Query: 535 NSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNW 594
           N     +P +P  +  L +F N  +  L  L          L +  N L+  LP      
Sbjct: 91  NQLTS-LPVLPPGLLELSIFSNPLT-HLPALP----SGLCKLWIFGNQLT-SLPVLPPG- 142

Query: 595 QKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNK 654
             L  L++++N+ +  +P        +  L   NN  +  LP      + L  L +  N+
Sbjct: 143 --LQELSVSDNQLA-SLPALP---SELCKLWAYNNQ-LTSLP---MLPSGLQELSVSDNQ 192

Query: 655 ISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNN 714
           ++  +P        +L  L   +N     +P     L+    L +S N ++ ++P   + 
Sbjct: 193 LA-SLP----TLPSELYKLWAYNNRLT-SLPALPSGLKE---LIVSGNRLT-SLPVLPSE 242

Query: 715 LTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP 774
           L  +    S N +   P                           + S+ +  N+L   +P
Sbjct: 243 LKELMV--SGNRLTSLP----------------------MLPSGLLSLSVYRNQL-TRLP 277

Query: 775 -EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKN 814
             +  L    ++NL  N L+      +  +T          
Sbjct: 278 ESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPII 318

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 68.0 bits (166), Expect = 8e-12
 Identities = 40/231 (17%), Positives = 85/231 (36%), Gaps = 47/231 (20%)

Query: 586 ELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQL 645
           ++  C  N     VLN+  +  +  +PD +  +  + +L + +N+ +  LP+      +L
Sbjct: 33  KMRACLNN--GNAVLNVGESGLT-TLPDCLPAH--ITTLVIPDNN-LTSLPAL---PPEL 83

Query: 646 TVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNIS 705
             L++  N+++  +P      L +L + S    +     P     L +   L +  N ++
Sbjct: 84  RTLEVSGNQLT-SLPVLPP-GLLELSIFSNPLTHL----PALPSGLCK---LWIFGNQLT 134

Query: 706 GTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLS 765
            ++P     L  ++   S N +   P                           +  +   
Sbjct: 135 -SLPVLPPGLQELSV--SDNQLASLP----------------------ALPSELCKLWAY 169

Query: 766 SNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
           +N+L   +P      GL  L++S N L   +P+    L  L + +     L
Sbjct: 170 NNQL-TSLPM--LPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSL 216

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 95.0 bits (237), Expect = 1e-21
 Identities = 60/259 (23%), Positives = 106/259 (40%), Gaps = 51/259 (19%)

Query: 141 NIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVN 200
           + ++LDLS         Y   +   LQ LDLS              ++  +E        
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC------------EIQTIED------- 69

Query: 201 LGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVY 260
                        L  L+ L L G  + S+   +  +FS  S SL  L     +++ S+ 
Sbjct: 70  --------GAYQSLSHLSTLILTGNPIQSL---ALGAFSGLS-SLQKLVAVETNLA-SLE 116

Query: 261 YWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVP-KSFRNLCRLR 319
            +      +L  L+++ N +Q       F N T+L +LDLS+N++ S+     R L ++ 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 320 A----LYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITL--FSSLKEL 373
                L    N +  + P  F ++       L+ L L++N L+ S+PD      +SL+++
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIR------LKELALDTNQLK-SVPDGIFDRLTSLQKI 229

Query: 374 HLYDNMLD-----VLYLNN 387
            L+ N  D     + YL+ 
Sbjct: 230 WLHTNPWDCSCPRIDYLSR 248

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 85.4 bits (212), Expect = 2e-18
 Identities = 58/245 (23%), Positives = 83/245 (33%), Gaps = 38/245 (15%)

Query: 292 PTSLSYLDLSNNQLVSV-PKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEIL 350
           P S   LDLS N L  +   SF +   L+ L      +  +    +  LS+     L  L
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH-----LSTL 81

Query: 351 QLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVA 410
            L  N ++ SL     FS L  L         L              IG L  L+ L+VA
Sbjct: 82  ILTGNPIQ-SLAL-GAFSGLSSLQK-------LVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 411 SNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKW 470
            N ++      + SNL+ L +LDLS N              ++  I              
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSN--------------KIQSIYCTD------LRVL 172

Query: 471 LQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEI 530
            Q       LD+S   ++   P  F ++   L  L L  N     +PD          +I
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEI--RLKELALDTNQLK-SVPDGIFDRLTSLQKI 229

Query: 531 DLSAN 535
            L  N
Sbjct: 230 WLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 37/199 (18%), Positives = 62/199 (31%), Gaps = 24/199 (12%)

Query: 541 IPP-IPLTVTSLILFKNMFSGSLSFLCQISDEHF------RYLDLSDNLLSGELPNCSKN 593
           IP  +P +  +L L  N           +    F      + LDLS   +        ++
Sbjct: 22  IPDNLPFSTKNLDLSFNPLR-------HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74

Query: 594 WQKLTVLNLANNKFSGKIPDSMDFNCMML-SLHLRNNSFIGELPSSV-KSFTQLTVLDLG 651
              L+ L L  N     +          L  L     + +  L +        L  L++ 
Sbjct: 75  LSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVA 132

Query: 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV-CHLQRIQV----LDLSQNNISG 706
           HN I          +L +L  L L SN     +       L ++ +    LDLS N ++ 
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

Query: 707 TVPQCLNNLTAMTANKSSN 725
             P     +        +N
Sbjct: 192 IQPGAFKEIRLKELALDTN 210

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 53/285 (18%), Positives = 86/285 (30%), Gaps = 84/285 (29%)

Query: 404 LELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQ 463
            + LD++ N L+  +      +   L  LDLS                E+  I  GA + 
Sbjct: 30  TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRC--------------EIQTIEDGAYQS 74

Query: 464 GPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKF 523
                  L T      L ++   I       F  LS +L  L     +            
Sbjct: 75  LSH----LST------LILTGNPIQSLALGAFSGLS-SLQKLVAVETNLA---------- 113

Query: 524 TAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDN-L 582
                   L                 +L                      + L+++ N +
Sbjct: 114 -------SLENFPIGHL--------KTL----------------------KELNVAHNLI 136

Query: 583 LSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFN------CMMLSLHLRNNSFIGELP 636
            S +LP    N   L  L+L++NK    I  + D         + LSL L  N  +  + 
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCT-DLRVLHQMPLLNLSLDLSLNP-MNFIQ 193

Query: 637 SSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFH 681
                  +L  L L  N++   +P  I D L  L  + L +N + 
Sbjct: 194 PGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 41/202 (20%), Positives = 69/202 (34%), Gaps = 52/202 (25%)

Query: 623 SLHLRNNSFIGELPSSV-KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFH 681
           +L L  N  +  L S    SF +L VLDL   +I   I      SL  L  L L  N   
Sbjct: 32  NLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 682 GRVPVQV-CHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDH 740
             + +     L  +Q L   + N++      + +L  +                      
Sbjct: 90  -SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK--------------------- 127

Query: 741 ALLVWKRKDSEYRNTLGLVKSIDLSSNRL-YGEIPEV-TSLVGLISLNLSKNSLTGPIPS 798
                                ++++ N +   ++PE  ++L  L  L+LS N +     +
Sbjct: 128 --------------------ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167

Query: 799 KIGGLTLL----NSLDLSKNML 816
            +  L  +     SLDLS N +
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPM 189

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 92.9 bits (231), Expect = 7e-21
 Identities = 57/230 (24%), Positives = 83/230 (36%), Gaps = 35/230 (15%)

Query: 212 SQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLV 271
           S++ S  E+     NL ++         +  +    L LS N +  +         + L 
Sbjct: 7   SKVASHLEVNCDKRNLTAL-------PPDLPKDTTILHLSENLLY-TFSLATLMPYTRLT 58

Query: 272 YLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDL 331
            L+L   +L              L  LDLS+NQL S+P   + L  L  L    N LT L
Sbjct: 59  QLNLDRAELTKL---QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115

Query: 332 LPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFT 391
                  L       L+ L L  N L+ +LP   L +   +       L+ L L NN  T
Sbjct: 116 PLGALRGLGE-----LQELYLKGNELK-TLPP-GLLTPTPK-------LEKLSLANNNLT 161

Query: 392 ----GTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHN 437
               G L      L  L+ L +  NSL   I +    +   L +  L  N
Sbjct: 162 ELPAGLLNG----LENLDTLLLQENSLY-TIPKGFFGSHL-LPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 85.5 bits (212), Expect = 2e-18
 Identities = 56/254 (22%), Positives = 77/254 (30%), Gaps = 74/254 (29%)

Query: 141 NIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVN 200
           +   L LS           L   T L  L+L               +L+           
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA------------ELTK---------- 69

Query: 201 LGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVY 260
                  LQV   LP L  L L    L S+                              
Sbjct: 70  -------LQVDGTLPVLGTLDLSHNQLQSLPL---------------------------- 94

Query: 261 YWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLR 319
             L  +  +L  LD+S N+L   +P  A      L  L L  N+L ++P        +L 
Sbjct: 95  --LGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151

Query: 320 ALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLF--SSLKELHLYD 377
            L   +NNLT+L   L   L N     L+ L L  N L  ++P    F    L    L+ 
Sbjct: 152 KLSLANNNLTELPAGLLNGLEN-----LDTLLLQENSLY-TIPK-GFFGSHLLPFAFLHG 204

Query: 378 NMLD----VLYLNN 387
           N       +LY   
Sbjct: 205 NPWLCNCEILYFRR 218

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 78.6 bits (194), Expect = 5e-16
 Identities = 45/177 (25%), Positives = 71/177 (40%), Gaps = 23/177 (12%)

Query: 264 FNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALY 322
            +  +S + ++     L   +P      P   + L LS N L +   +      RL  L 
Sbjct: 6   VSKVASHLEVNCDKRNLTA-LPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 323 QDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDV 382
            D   LT L   +   L       L  L L+ N L+ SLP   L  +L  L        V
Sbjct: 62  LDRAELTKL--QVDGTLPV-----LGTLDLSHNQLQ-SLP--LLGQTLPALT-------V 104

Query: 383 LYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
           L ++ NR T     ++  L +L+ L +  N LK  +    L+   +L  L L++N+L
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL 160

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 41/184 (22%), Positives = 76/184 (41%), Gaps = 12/184 (6%)

Query: 529 EIDLSANSFEGPIPP-IPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGEL 587
           E++    +    +PP +P   T L L +N+   + S    +       L+L    L+ +L
Sbjct: 14  EVNCDKRNLTA-LPPDLPKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT-KL 70

Query: 588 PNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSV-KSFTQLT 646
                    L  L+L++N+    +P        +  L +  N  +  LP    +   +L 
Sbjct: 71  Q-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQ 127

Query: 647 VLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVC-HLQRIQVLDLSQNNIS 705
            L L  N++   +P  +    P L  LSL +NN    +P  +   L+ +  L L +N++ 
Sbjct: 128 ELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY 185

Query: 706 GTVP 709
            T+P
Sbjct: 186 -TIP 188

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 6/147 (4%)

Query: 574 RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIG 633
             L LS+NLL          + +LT LNL   + + K+        ++ +L L +N  + 
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQ-LQ 90

Query: 634 ELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVC-HLQ 692
            LP   ++   LTVLD+  N+++  +P      L +L  L L+ N     +P  +     
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELK-TLPPGLLTPTP 148

Query: 693 RIQVLDLSQNNISGTVPQCLNNLTAMT 719
           +++ L L+ NN++      LN L  + 
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLD 175

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.9 bits (122), Expect = 7e-07
 Identities = 27/156 (17%), Positives = 38/156 (24%), Gaps = 46/156 (29%)

Query: 285 PDSAFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTDLLPNLFLKLSNCS 343
           P        S   ++     L ++P    ++      L+   N L        +  +   
Sbjct: 2   PICEVSKVASHLEVNCDKRNLTALPPDLPKDT---TILHLSENLLYTFSLATLMPYTR-- 56

Query: 344 RDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQ 403
              L  L L+   L   L        L  L L  N                     QL  
Sbjct: 57  ---LTQLNLDRAELT-KLQVDGTLPVLGTLDLSHN---------------------QLQS 91

Query: 404 LELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
           L                     L  LT LD+S N L
Sbjct: 92  LP---------------LLGQTLPALTVLDVSFNRL 112

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 42/196 (21%), Positives = 72/196 (36%), Gaps = 50/196 (25%)

Query: 624 LHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGR 683
           LHL  N       +++  +T+LT L+L   +++ +    +  +LP L  L L  N     
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL---QVDGTLPVLGTLDLSHNQLQ-S 91

Query: 684 VPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALL 743
           +P+    L  + VLD+S N ++      L  L  +                         
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ------------------------ 127

Query: 744 VWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVT--SLVGLISLNLSKNSLTGPIPSKI- 800
                             + L  N L   +P         L  L+L+ N+LT  +P+ + 
Sbjct: 128 -----------------ELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLL 168

Query: 801 GGLTLLNSLDLSKNML 816
            GL  L++L L +N L
Sbjct: 169 NGLENLDTLLLQENSL 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 39/191 (20%), Positives = 56/191 (29%), Gaps = 60/191 (31%)

Query: 113 GLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLS 172
            L  L  L++ +N    + +P    +L  +  LD+S    T      L  L  LQ L L 
Sbjct: 75  TLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132

Query: 173 FNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIA 232
            N            +L  L                  +++  P L +L L   NL  + A
Sbjct: 133 GN------------ELKTLP---------------PGLLTPTPKLEKLSLANNNLTELPA 165

Query: 233 SSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNP 292
                                         L N   +L  L L  N L   IP   F + 
Sbjct: 166 G-----------------------------LLNGLENLDTLLLQENSLYT-IPKGFFGSH 195

Query: 293 TSLSYLDLSNN 303
             L +  L  N
Sbjct: 196 -LLPFAFLHGN 205

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 93.7 bits (233), Expect = 9e-21
 Identities = 35/224 (15%), Positives = 71/224 (31%), Gaps = 26/224 (11%)

Query: 239 SNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYL 298
           S+  R+   L   L  +   +    F+    L  +++S N +   I    F N   L  +
Sbjct: 26  SDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI 84

Query: 299 DLSN-NQLVSVPKS-FRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNM 356
            +   N L+ +    F+NL  L+ L   +  +  L     +           +L +  N+
Sbjct: 85  RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ-----KVLLDIQDNI 139

Query: 357 LRGSLPDIT---LFSSLKELHLYDN--------------MLDVLYLNNNRFTGTLTKSIG 399
              ++   +   L      L L  N              + ++   +NN           
Sbjct: 140 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFH 199

Query: 400 QLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNF 443
             S   +LD++   +   +    L NL +L      +   +   
Sbjct: 200 GASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLPTL 242

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 89.9 bits (223), Expect = 2e-19
 Identities = 53/242 (21%), Positives = 91/242 (37%), Gaps = 32/242 (13%)

Query: 215 PSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLD 274
            +  EL+     L  +      +FS     L  +++S NDV   +   +F++   L  + 
Sbjct: 30  RNAIELRFVLTKLRVI---QKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85

Query: 275 LS-SNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRALYQDSNN-LTDL 331
           +  +N L   I   AF N  +L YL +SN  +  +P     +  +   L    N  +  +
Sbjct: 86  IEKANNLLY-INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI 144

Query: 332 LPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDN------------- 378
             N F+ LS        IL LN N ++         + L EL+L DN             
Sbjct: 145 ERNSFVGLSF----ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHG 200

Query: 379 --MLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSH 436
                +L ++  R     +  +  L +L      + +LK + T   L  L  L    L++
Sbjct: 201 ASGPVILDISRTRIHSLPSYGLENLKKLRARS--TYNLKKLPT---LEKLVALMEASLTY 255

Query: 437 NS 438
            S
Sbjct: 256 PS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.1 bits (169), Expect = 1e-12
 Identities = 46/245 (18%), Positives = 84/245 (34%), Gaps = 46/245 (18%)

Query: 131 QIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSF 190
           +IP+ +   +N   L                    L+ +++S N  +   + +  S L  
Sbjct: 23  EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 191 LEYVRLNQVNLGEATDWLQVVS-----QLPSLTELQLRGCNLPSV--------------- 230
           L  +R+ + N       L  ++      LP+L  L +    +  +               
Sbjct: 81  LHEIRIEKAN------NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD 134

Query: 231 ------IAS-SSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGP 283
                 I +    SF   S     L L+ N +   ++   FN +         +N L+  
Sbjct: 135 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEE- 192

Query: 284 IPDSAFPNPTSLSYLDLSNNQLVSVP-KSFRNLCRLRALYQDSNNLTDL-----LPNL-F 336
           +P+  F   +    LD+S  ++ S+P     NL +LRA    + NL  L     L  L  
Sbjct: 193 LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR--STYNLKKLPTLEKLVALME 250

Query: 337 LKLSN 341
             L+ 
Sbjct: 251 ASLTY 255

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 46/238 (19%), Positives = 76/238 (31%), Gaps = 38/238 (15%)

Query: 497 DLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPP--EIDLSANSFEGPIPPIPLTVTSLILF 554
           DL  N   L         +       F+ +    +I++S N     I             
Sbjct: 27  DLPRNAIELRFVLTKLRVIQKGA---FSGFGDLEKIEISQNDVLEVIEA----------- 72

Query: 555 KNMFSGSLSFLCQISDEHFRYLDLSD-NLLSGELPNCSKNWQKLTVLNLANNKFSGKIPD 613
            ++FS  L  L          + +   N L    P   +N   L  L ++N      +PD
Sbjct: 73  -DVFSN-LPKL--------HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPD 121

Query: 614 SMDFNCMML-SLHLRNNSFIGELPSSVKSFTQLTV----LDLGHNKISGIIPAWIGDSLP 668
               + +    L +++N  I  +     SF  L+     L L  N I   I     +   
Sbjct: 122 VHKIHSLQKVLLDIQDNINIHTIER--NSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQ 178

Query: 669 DLVVLSLRSNNFHGRVPVQVC-HLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSN 725
              +    +NN    +P  V        +LD+S+  I       L NL  + A  + N
Sbjct: 179 LDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 235

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 48.3 bits (115), Expect = 5e-06
 Identities = 57/361 (15%), Positives = 102/361 (28%), Gaps = 113/361 (31%)

Query: 342 CSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQL 401
           CS           + +   +P   L  +  EL      L V+      F+G         
Sbjct: 9   CSNRVF---LCQESKVT-EIPS-DLPRNAIELRFVLTKLRVI--QKGAFSG--------F 53

Query: 402 SQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGAC 461
             LE ++++ N +  +I     SNL +L  + +                           
Sbjct: 54  GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA------------------------ 89

Query: 462 KQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQ 521
                        N    ++          P  F +L PNL YL +S+      LPD+ +
Sbjct: 90  -------------NNLLYIN----------PEAFQNL-PNLQYLLISNTGIK-HLPDVHK 124

Query: 522 KFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDN 581
             +     +D+  N     I              N F G               L L+ N
Sbjct: 125 IHSLQKVLLDIQDNINIHTIER------------NSFVGLSFES--------VILWLNKN 164

Query: 582 LLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKS 641
            +     +     Q   +    NN                    L N+ F G        
Sbjct: 165 GIQEIHNSAFNGTQLDELNLSDNNNLE----------------ELPNDVFHG-------- 200

Query: 642 FTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQ 701
            +   +LD+   +I   +P++  ++L  L   S  +     ++P  +  L  +    L+ 
Sbjct: 201 ASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLPT-LEKLVALMEASLTY 255

Query: 702 N 702
            
Sbjct: 256 P 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 34/207 (16%), Positives = 69/207 (33%), Gaps = 19/207 (9%)

Query: 623 SLHLRNNSFIGELPSSV-KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFH 681
            L       +  +       F  L  +++  N +  +I A +  +LP L  + +   N  
Sbjct: 34  ELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92

Query: 682 GRVPVQVC-HLQRIQVLDLSQNNISGTVPQ--CLNNLTAMTANKSSNAMIRYPLRTDYYN 738
             +  +   +L  +Q L +S   I   +P    +++L  +  +   N  I    R  +  
Sbjct: 93  LYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151

Query: 739 DHALLVW--------KRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVT--SLVGLISLNLS 788
                V         +   +   N   L +     +N L  E+P        G + L++S
Sbjct: 152 LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDIS 210

Query: 789 KNSLTGPIPSKI-GGLTLLNSLDLSKN 814
           +  +   +PS     L  L +      
Sbjct: 211 RTRIH-SLPSYGLENLKKLRARSTYNL 236

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 93.4 bits (232), Expect = 1e-20
 Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 13/172 (7%)

Query: 239 SNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYL 298
            +     A LDLS N++S     W     ++L  L LS N L   I   AF    +L YL
Sbjct: 35  QSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYL 93

Query: 299 DLSNNQLVSVPK-SFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNML 357
           DLS+N L ++ +  F +L  L  L   +N++  +  N F  ++      L+ L L+ N +
Sbjct: 94  DLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ-----LQKLYLSQNQI 148

Query: 358 RGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDV 409
               P   L     +L      L +L L++N+        + +L       +
Sbjct: 149 S-RFPV-ELIKDGNKLP----KLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 90.3 bits (224), Expect = 1e-19
 Identities = 52/180 (28%), Positives = 75/180 (41%), Gaps = 23/180 (12%)

Query: 267 SSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRALYQDS 325
            S    LDLS N L     +      T+L  L LS+N L  +   +F  +  LR L   S
Sbjct: 38  PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97

Query: 326 NNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYL 385
           N+L  L   LF  L       LE+L L +N +   +     F  + +L         LYL
Sbjct: 98  NHLHTLDEFLFSDLQA-----LEVLLLYNNHIV-VVDR-NAFEDMAQLQK-------LYL 143

Query: 386 NNNRFT----GTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLT--YLDLSHNSL 439
           + N+ +      + K   +L +L LLD++SN LK  +    L  L       L L +N L
Sbjct: 144 SQNQISRFPVELI-KDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 83.4 bits (206), Expect = 3e-17
 Identities = 51/229 (22%), Positives = 81/229 (35%), Gaps = 66/229 (28%)

Query: 164 TSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLR 223
           +    LDLS N       L  L                          ++L +L  L L 
Sbjct: 39  SYTALLDLSHN------NLSRLRAEWTP--------------------TRLTNLHSLLLS 72

Query: 224 GCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGP 283
             +L  +          SS +   +                    +L YLDLSSN L   
Sbjct: 73  HNHLNFI----------SSEAFVPV-------------------PNLRYLDLSSNHLHT- 102

Query: 284 IPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRALYQDSNNLTDLLPNLFLKLSNC 342
           + +  F +  +L  L L NN +V V + +F ++ +L+ LY   N ++     L    +  
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKL 162

Query: 343 SRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFT 391
            +  L +L L+SN L+  LP       L        + + LYL+NN   
Sbjct: 163 PK--LMLLDLSSNKLK-KLPLTD-LQKLPAW-----VKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.0 bits (148), Expect = 5e-10
 Identities = 40/155 (25%), Positives = 58/155 (37%), Gaps = 11/155 (7%)

Query: 574 RYLDLSDNLLSGELPNCS-KNWQKLTVLNLANNKFSGKIPDSMDFNCMML-SLHLRNNSF 631
             LDLS N LS      +      L  L L++N  +  I          L  L L +N  
Sbjct: 42  ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH- 99

Query: 632 IGELPSSV-KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV-- 688
           +  L   +      L VL L +N I  ++     + +  L  L L  N    R PV++  
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIK 157

Query: 689 --CHLQRIQVLDLSQNNISGTVPQCLNNLTAMTAN 721
               L ++ +LDLS N +       L  L A   N
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 43/217 (19%), Positives = 68/217 (31%), Gaps = 63/217 (29%)

Query: 119 YLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDML 178
            L++ +N+    +       L N+  L LS+             + +L+YLDLS N    
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN---- 98

Query: 179 SKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSF 238
              L  L +  F                     S L +L  L L   ++  V  ++    
Sbjct: 99  --HLHTLDEFLF---------------------SDLQALEVLLLYNNHIVVVDRNA---- 131

Query: 239 SNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNP---TSL 295
                                    F   + L  L LS N++    P     +      L
Sbjct: 132 -------------------------FEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKL 165

Query: 296 SYLDLSNNQLVSVPK-SFRNLCRL--RALYQDSNNLT 329
             LDLS+N+L  +P    + L       LY  +N L 
Sbjct: 166 MLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 35/182 (19%), Positives = 60/182 (32%), Gaps = 51/182 (28%)

Query: 642 FTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV-CHLQRIQVLDLS 700
            +   +LDL HN +S +   W    L +L  L L  N+ +  +  +    +  ++ LDLS
Sbjct: 38  PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96

Query: 701 QNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVK 760
            N++        ++L A+                                          
Sbjct: 97  SNHLHTLDEFLFSDLQALE----------------------------------------- 115

Query: 761 SIDLSSNRLYGEIPEVT--SLVGLISLNLSKNSLTGPIP----SKIGGLTLLNSLDLSKN 814
            + L +N +   +       +  L  L LS+N ++   P         L  L  LDLS N
Sbjct: 116 VLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSN 173

Query: 815 ML 816
            L
Sbjct: 174 KL 175

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.4 bits (105), Expect = 9e-05
 Identities = 48/213 (22%), Positives = 67/213 (31%), Gaps = 55/213 (25%)

Query: 497 DLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPP--EIDLSANSFEGPIPPIPLTVTSLILF 554
            L      L+LSHN+ + +  + +   T       + LS N     +  I          
Sbjct: 36  SLPSYTALLDLSHNNLSRLRAEWT--PTRLTNLHSLLLSHNH----LNFIS--------- 80

Query: 555 KNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCS-KNWQKLTVLNLANNKFSGKIPD 613
               S +   +  +     RYLDLS N L   L      + Q L VL L NN        
Sbjct: 81  ----SEAFVPVPNL-----RYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV----- 125

Query: 614 SMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIP-AWIG-DSLPDLV 671
                       +  N+F            QL  L L  N+IS          + LP L+
Sbjct: 126 -----------VVDRNAFED--------MAQLQKLYLSQNQISRFPVELIKDGNKLPKLM 166

Query: 672 VLSLRSNNFHGRVPVQVCHLQRIQVLDLS-QNN 703
           +L L SN         +  L       L   NN
Sbjct: 167 LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 88.2 bits (219), Expect = 7e-20
 Identities = 34/147 (23%), Positives = 67/147 (45%), Gaps = 14/147 (9%)

Query: 248 LDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVS 307
           L L+ N+ +      +F     L  ++ S+NK+   I + AF   + ++ + L++N+L +
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNEILLTSNRLEN 95

Query: 308 VPKS-FRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITL 366
           V    F+ L  L+ L   SN +T +  + F+ LS+     + +L L  N +  ++     
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS-----VRLLSLYDNQIT-TVAPGAF 149

Query: 367 --FSSLKELHLYDNMLD----VLYLNN 387
               SL  L+L  N  +    + +L  
Sbjct: 150 DTLHSLSTLNLLANPFNCNCYLAWLGE 176

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 73.2 bits (180), Expect = 9e-15
 Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 15/141 (10%)

Query: 273 LDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVP-KSFRNLCRLRALYQDSNNLTDL 331
           L L++N+         F     L  ++ SNN++  +   +F     +  +   SN L ++
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96

Query: 332 LPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFT 391
              +F  L +     L+ L L SN +   + +   F  L  + L       L L +N+ T
Sbjct: 97  QHKMFKGLES-----LKTLMLRSNRIT-CVGN-DSFIGLSSVRL-------LSLYDNQIT 142

Query: 392 GTLTKSIGQLSQLELLDVASN 412
                +   L  L  L++ +N
Sbjct: 143 TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 41/150 (27%)

Query: 292 PTSLSYLDLSNNQLVSVPKS--FRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEI 349
           P   + L L+NN+   +  +  F+ L +LR +   +N +TD+    F   S      +  
Sbjct: 31  PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG-----VNE 85

Query: 350 LQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDV 409
           + L SN L  ++    +F  L+ L         L L +N           +++ +     
Sbjct: 86  ILLTSNRLE-NVQH-KMFKGLESLKT-------LMLRSN-----------RITCVG---- 121

Query: 410 ASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
                           LS +  L L  N +
Sbjct: 122 -----NDS-----FIGLSSVRLLSLYDNQI 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 10/132 (7%)

Query: 576 LDLSDNLLSGELPNCS-KNWQKLTVLNLANNKFSGKIPDSMDFNCM--MLSLHLRNNSFI 632
           L L++N  +        K   +L  +N +NNK +  I +   F     +  + L +N  +
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGA-FEGASGVNEILLTSNR-L 93

Query: 633 GELPSSV-KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV-CH 690
             +   + K    L  L L  N+I+  +       L  + +LSL  N     V       
Sbjct: 94  ENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDT 151

Query: 691 LQRIQVLDLSQN 702
           L  +  L+L  N
Sbjct: 152 LHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 8/126 (6%)

Query: 598 TVLNLANNKFSGKIPDSMDFNCM--MLSLHLRNNSFIGELPSSV-KSFTQLTVLDLGHNK 654
             L L NN+F+  +  +  F  +  +  ++  NN  I ++     +  + +  + L  N+
Sbjct: 35  AELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNR 92

Query: 655 ISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV-CHLQRIQVLDLSQNNISGTVPQCLN 713
           +  +    +   L  L  L LRSN     V       L  +++L L  N I+   P   +
Sbjct: 93  LENV-QHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150

Query: 714 NLTAMT 719
            L +++
Sbjct: 151 TLHSLS 156

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 33/186 (17%), Positives = 54/186 (29%), Gaps = 57/186 (30%)

Query: 120 LNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLS 179
           L +  N+F   +       L  +R ++ SN   T          + +  + L+ N     
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN----- 91

Query: 180 KKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFS 239
                  +L  ++                ++   L SL  L LR   +  V   S     
Sbjct: 92  -------RLENVQ---------------HKMFKGLESLKTLMLRSNRITCVGNDS----- 124

Query: 240 NSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLD 299
                                   F   SS+  L L  N++   +   AF    SLS L+
Sbjct: 125 ------------------------FIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLN 159

Query: 300 LSNNQL 305
           L  N  
Sbjct: 160 LLANPF 165

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 90.4 bits (225), Expect = 3e-19
 Identities = 61/382 (15%), Positives = 118/382 (30%), Gaps = 59/382 (15%)

Query: 115 QHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGR----VPYQLGNLTSLQYLD 170
             +  L+++  +    +    +  L+  + + L + G T      +   L    +L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 171 LSFNF------DMLSKKLEWLSQLSFLEYVRLNQVNLGE--ATDWLQVVSQLPSLTELQL 222
           L  N         + + L+  +    ++ + L    L           +  LP+L EL L
Sbjct: 63  LRSNELGDVGVHCVLQGLQ--TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 223 RGCNL-PSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFN---SSSSLVYLDLSSN 278
               L  + +        +    L  L L    +S +    L +   +      L +S+N
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 279 KLQGP----IPDSAFPNPTSLSYLDLSNNQL-----VSVPKSFRNLCRLRALYQDSNNLT 329
            +       +      +P  L  L L +  +       +     +   LR L   SN L 
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 330 DLLPNLFLKLSNCSRDTLEILQLNSNMLRGS-----LPDITLFSSLKELHLYDNM----- 379
           D+               L  L +    +           +    SLKEL L  N      
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300

Query: 380 --------------LDVLYLNNNRFTGT----LTKSIGQLSQLELLDVASNSLKG----M 417
                         L+ L++ +  FT       +  + Q   L  L +++N L+      
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360

Query: 418 ITEAHLSNLSRLTYLDLSHNSL 439
           + +      S L  L L+   +
Sbjct: 361 LCQGLGQPGSVLRVLWLADCDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 80.0 bits (198), Expect = 8e-16
 Identities = 86/375 (22%), Positives = 130/375 (34%), Gaps = 54/375 (14%)

Query: 107 ISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKN----IRHLDLSNAGFTGR----VPY 158
           ISS+L     L  LN++ N+ G   +   +  L+     I+ L L N   TG     +  
Sbjct: 48  ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107

Query: 159 QLGNLTSLQYLDLSFN------FDMLSKKLEWLSQLSFLEYVRLNQVNLGE--ATDWLQV 210
            L  L +LQ L LS N        +L + L  L     LE ++L   +L          V
Sbjct: 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGL--LDPQCRLEKLQLEYCSLSAASCEPLASV 165

Query: 211 VSQLPSLTELQLRGCNL-PSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFN---S 266
           +   P   EL +   ++  + +        +S   L  L L    V++     L     S
Sbjct: 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS 225

Query: 267 SSSLVYLDLSSNKLQGP----IPDSAFPNPTSLSYLDLSNNQL-----VSVPKSFRNLCR 317
            +SL  L L SNKL       +        + L  L +    +       + +  R    
Sbjct: 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES 285

Query: 318 LRALYQDSNNLTD----LLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKEL 373
           L+ L    N L D    LL    L    C    LE L + S     +       S L + 
Sbjct: 286 LKELSLAGNELGDEGARLLCET-LLEPGC---QLESLWVKSCSF-TAACCSHFSSVLAQN 340

Query: 374 HLYDNMLDVLYLNNNRFTGTLTKSIGQL-----SQLELLDVASNSLK----GMITEAHLS 424
                 L  L ++NNR      + + Q      S L +L +A   +       +    L 
Sbjct: 341 R----FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT-LL 395

Query: 425 NLSRLTYLDLSHNSL 439
               L  LDLS+N L
Sbjct: 396 ANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 73.1 bits (180), Expect = 1e-13
 Identities = 98/546 (17%), Positives = 158/546 (28%), Gaps = 141/546 (25%)

Query: 191 LEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDL 250
           ++ + +    L +A  W +++  L     ++L  C L         S    + +LA L+L
Sbjct: 5   IQSLDIQCEELSDA-RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 251 SLNDVSNS----VYYWLFNSSSSLVYLDLSSNKLQGPIPD-------SAFPNPTSLSYLD 299
             N++ +     V   L   S  +  L L +      +         S      +L  L 
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC----LTGAGCGVLSSTLRTLPTLQELH 119

Query: 300 LSNNQLVSV------PKSFRNLCRLRALYQDSNNLTDL-LPNLFLKLSNCSRDTLEILQL 352
           LS+N L                CRL  L  +  +L+      L   L        + L +
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP--DFKELTV 177

Query: 353 NSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFT----GTLTKSIGQLSQLELLD 408
           ++N +        L   LK+       L+ L L +   T      L   +   + L  L 
Sbjct: 178 SNNDI-NEAGVRVLCQGLKDSPC---QLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233

Query: 409 VASNSLKG----MITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQG 464
           + SN L       +    L   SRL  L +    +                      K  
Sbjct: 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI--------------------TAKGC 273

Query: 465 PQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDL----SPNLYYLNLSHNHFTGM-LPDL 519
               + L+ +    EL ++  E+ D       +        L  L +    FT       
Sbjct: 274 GDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF 333

Query: 520 SQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLS 579
           S           L+ N            +  L +  N          ++ D   R   L 
Sbjct: 334 SSV---------LAQNR----------FLLELQISNN----------RLEDAGVRE--LC 362

Query: 580 DNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSV 639
             L     P        L VL LA+   S       D +C  L+  L  N          
Sbjct: 363 QGLGQ---PGS-----VLRVLWLADCDVS-------DSSCSSLAATLLAN---------- 397

Query: 640 KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDL 699
                L  LDL +N         +GD+    +V S+R            C L   + L L
Sbjct: 398 ---HSLRELDLSNNC--------LGDAGILQLVESVRQPG---------CLL---EQLVL 434

Query: 700 SQNNIS 705
                S
Sbjct: 435 YDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 70.0 bits (172), Expect = 1e-12
 Identities = 69/369 (18%), Positives = 117/369 (31%), Gaps = 70/369 (18%)

Query: 107 ISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKN----IRHLDLSNAGFTGRVPYQLG- 161
           +SS+L  L  L  L++  N  G   +      L +    +  L L     +      L  
Sbjct: 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164

Query: 162 ---NLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLT 218
                   + L +S N D+    +  L Q        L                    L 
Sbjct: 165 VLRAKPDFKELTVSNN-DINEAGVRVLCQG-------LKDSPC--------------QLE 202

Query: 219 ELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNS----VYYWLFNSSSSLVYLD 274
            L+L  C + S           S  SL  L L  N + +     +   L + SS L  L 
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262

Query: 275 LSSNKLQGPIPD------SAFPNPTSLSYLDLSNNQL-----VSVPKSFRN-LCRLRALY 322
           +    +                   SL  L L+ N+L       + ++     C+L +L+
Sbjct: 263 IWECGIT---AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319

Query: 323 QDSNNLTDL-LPNLFLKLSNCSRDTLEILQLNSNMLRGSLPD---ITLFSSLKELHLYDN 378
             S + T     +    L+      L  LQ+++N L     D     L   L +     +
Sbjct: 320 VKSCSFTAACCSHFSSVLAQNR--FLLELQISNNRLE----DAGVRELCQGLGQPG---S 370

Query: 379 MLDVLYLNNNRFT----GTLTKSIGQLSQLELLDVASNSLKG----MITEAHLSNLSRLT 430
           +L VL+L +   +     +L  ++     L  LD+++N L       + E+       L 
Sbjct: 371 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 430

Query: 431 YLDLSHNSL 439
            L L     
Sbjct: 431 QLVLYDIYW 439

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 89.0 bits (221), Expect = 1e-18
 Identities = 71/330 (21%), Positives = 113/330 (34%), Gaps = 63/330 (19%)

Query: 136 IGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFN----FDMLS-KKLEWL----- 185
              L  +  LD  N+  T      +  LT L  L  + N     D+     L +L     
Sbjct: 38  EEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSN 95

Query: 186 -------SQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSF 238
                  + L+ L Y+  +   L +       VSQ P LT L      L      + +  
Sbjct: 96  KLTNLDVTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTL------TEIDV 144

Query: 239 SNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYL 298
           S+++  L  LD  LN     +        + L  LD S NK+     +        L+ L
Sbjct: 145 SHNT-QLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKIT----ELDVSQNKLLNRL 196

Query: 299 DLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLR 358
           +   N +  +        +L  L   SN LT+      + ++  ++  L     + N L 
Sbjct: 197 NCDTNNITKLD--LNQNIQLTFLDCSSNKLTE------IDVTPLTQ--LTYFDCSVNPL- 245

Query: 359 GSLPDITLFSSLKELHLYDNMLDVL---------YLNNNRFTGTLTKSIGQLSQLELLDV 409
            +  D++  S L  LH     L  +         Y             +   +QL LLD 
Sbjct: 246 -TELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDC 304

Query: 410 ASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
            +      ITE  LS   +L YL L++  L
Sbjct: 305 QAAG----ITELDLSQNPKLVYLYLNNTEL 330

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 83.6 bits (207), Expect = 6e-17
 Identities = 62/352 (17%), Positives = 115/352 (32%), Gaps = 58/352 (16%)

Query: 110 SLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYL 169
            +  L  L YLN   N     ++   +     + +L+ +    T      + + T L  L
Sbjct: 101 DVTPLTKLTYLNCDTNKL--TKLD--VSQNPLLTYLNCARNTLT---EIDVSHNTQLTEL 153

Query: 170 DLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPS 229
           D   N  +    +   +QL+ L     N++   +       VSQ   L  L     N+  
Sbjct: 154 DCHLNKKITKLDVTPQTQLTTL-DCSFNKITELD-------VSQNKLLNRLNCDTNNI-- 203

Query: 230 VIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAF 289
               + +  + +   L  LD S N ++           + L Y D S N L   +  S  
Sbjct: 204 ----TKLDLNQNI-QLTFLDCSSNKLTEI----DVTPLTQLTYFDCSVNPLT-ELDVSTL 253

Query: 290 PNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEI 349
                L+ L      L+ +  +  +  +L     +       L      +++ ++  L +
Sbjct: 254 SK---LTTLHCIQTDLLEIDLT--HNTQLIYFQAEGCRKIKELD-----VTHNTQ--LYL 301

Query: 350 LQLNSNMLRGSLPDITLFSSLKELHLYDNM-----------LDVLYLNNNRFTGTLTKSI 398
           L   +  +   L D++    L  L+L +             L  L   N       + S+
Sbjct: 302 LDCQAAGIT-EL-DLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQ-DFS-SV 357

Query: 399 GQLSQLELLDVASNSL----KGMITEAHLSNLSRLTYLDLSHNSLILNFGSG 446
           G++  L     A        K  +T   L+       LD   N + +  G G
Sbjct: 358 GKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDG 409

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 80.9 bits (200), Expect = 4e-16
 Identities = 76/437 (17%), Positives = 140/437 (32%), Gaps = 93/437 (21%)

Query: 250 LSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVP 309
           ++      +         ++L  LD  ++ +      +     T L+ L  ++N + ++ 
Sbjct: 24  VAAAFEMQATDTISEEQLATLTSLDCHNSSITDM---TGIEKLTGLTKLICTSNNITTLD 80

Query: 310 KSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSS 369
                   L  L  DSN LT+L       ++  ++  L  L  ++N L     D++    
Sbjct: 81  --LSQNTNLTYLACDSNKLTNL------DVTPLTK--LTYLNCDTNKLTKL--DVSQNPL 128

Query: 370 LKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRL 429
           L  L+   N L  +              +   +QL  LD   N     IT+  ++  ++L
Sbjct: 129 LTYLNCARNTLTEI-------------DVSHNTQLTELDCHLNKK---ITKLDVTPQTQL 172

Query: 430 TYLDLSHNSLI-LNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEIS 488
           T LD S N +  L+       +  LN +                  N  ++LD++     
Sbjct: 173 TTLDCSFNKITELDVSQ----NKLLNRLNCD--------------TNNITKLDLNQ---- 210

Query: 489 DTVPNWFWDLSPNLYYLNLSHNHFT----GMLPDLSQKFTAYPPEIDLSANSFEGPIPPI 544
                     +  L +L+ S N  T      L  L+          D S N         
Sbjct: 211 ----------NIQLTFLDCSSNKLTEIDVTPLTQLT--------YFDCSVNPLTELDVST 252

Query: 545 PLTVTSLILFKNMFSG-SLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLA 603
              +T+L   +       L+   Q+      Y          EL     +  +L +L+  
Sbjct: 253 LSKLTTLHCIQTDLLEIDLTHNTQL-----IYFQAEGCRKIKELD--VTHNTQLYLLDCQ 305

Query: 604 NNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWI 663
               + ++  S   N  ++ L+L N   + EL   V   T+L  L   +  I        
Sbjct: 306 AAGIT-ELDLS--QNPKLVYLYLNNTE-LTELD--VSHNTKLKSLSCVNAHIQDFSSV-- 357

Query: 664 GDSLPDLVVLSLRSNNF 680
              +P L          
Sbjct: 358 -GKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 79.7 bits (197), Expect = 8e-16
 Identities = 53/312 (16%), Positives = 101/312 (32%), Gaps = 52/312 (16%)

Query: 140 KNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQV 199
            N      +              L +L  LD   +   ++  +  + +L+ L  +     
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNS--SIT-DMTGIEKLTGLTKLICTSN 74

Query: 200 NLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSV 259
           N+         +SQ  +LT L      L      +++  +  +  L +L+   N ++   
Sbjct: 75  NITTLD-----LSQNTNLTYLACDSNKL------TNLDVTPLT-KLTYLNCDTNKLTKLD 122

Query: 260 YYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLR 319
                + +  L YL+ + N L     +    + T L+ LD   N+ ++         +L 
Sbjct: 123 ----VSQNPLLTYLNCARNTLT----EIDVSHNTQLTELDCHLNKKITKL-DVTPQTQLT 173

Query: 320 ALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDN- 378
            L    N +T+      L +S      L  L  ++N +  +  D+     L  L    N 
Sbjct: 174 TLDCSFNKITE------LDVSQNKL--LNRLNCDTNNI--TKLDLNQNIQLTFLDCSSNK 223

Query: 379 ----------MLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSR 428
                      L     + N  T      +  LS+L  L      L     E  L++ ++
Sbjct: 224 LTEIDVTPLTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTDL----LEIDLTHNTQ 276

Query: 429 LTYLDLSHNSLI 440
           L Y        I
Sbjct: 277 LIYFQAEGCRKI 288

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 78.2 bits (193), Expect = 2e-15
 Identities = 90/432 (20%), Positives = 142/432 (32%), Gaps = 109/432 (25%)

Query: 289 FPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLE 348
           FP+    S +  +     +   S   L  L +L   ++++TD+      KL+      L 
Sbjct: 15  FPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTG-----LT 67

Query: 349 ILQLNSNMLRGSLPDITLFSSLKELHLYDN-----------MLDVLYLNNNRFTGTLTKS 397
            L   SN +     D++  ++L  L    N            L  L  + N+ T      
Sbjct: 68  KLICTSNNITT--LDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLT---KLD 122

Query: 398 IGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIR 457
           + Q   L  L+ A N+    +TE  +S+ ++LT LD   N  I            L  + 
Sbjct: 123 VSQNPLLTYLNCARNT----LTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQ--LTTLD 176

Query: 458 LGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLP 517
                            NK +ELDVS               +  L  LN   N+ T    
Sbjct: 177 CS--------------FNKITELDVSQ--------------NKLLNRLNCDTNNIT---- 204

Query: 518 DLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFS----GSLSFLCQISDEHF 573
                      ++DL+ N            +T L    N  +      L+ L        
Sbjct: 205 -----------KLDLNQNI----------QLTFLDCSSNKLTEIDVTPLTQL-------- 235

Query: 574 RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIG 633
            Y D S N L+ EL        KLT L+        +I  +   N  ++         I 
Sbjct: 236 TYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLL-EIDLT--HNTQLIYFQAEGCRKIK 289

Query: 634 ELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQR 693
           EL   V   TQL +LD     I+ +  +      P LV L L +        + V H  +
Sbjct: 290 ELD--VTHNTQLYLLDCQAAGITELDLS----QNPKLVYLYLNNTELTE---LDVSHNTK 340

Query: 694 IQVLDLSQNNIS 705
           ++ L     +I 
Sbjct: 341 LKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 68.2 bits (167), Expect = 4e-12
 Identities = 46/287 (16%), Positives = 98/287 (34%), Gaps = 39/287 (13%)

Query: 108 SSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQ 167
              +     L  L+  +N     ++   +   K +  L+      T ++   L     L 
Sbjct: 163 KLDVTPQTQLTTLDCSFNKI--TELD--VSQNKLLNRLNCDTNNIT-KLD--LNQNIQLT 215

Query: 168 YLDLSFNFDMLSKKLEWL--SQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGC 225
           +LD S N      KL  +  + L+ L Y   +   L E       VS L  LT L     
Sbjct: 216 FLDCSSN------KLTEIDVTPLTQLTYFDCSVNPLTELD-----VSTLSKLTTLHCIQT 264

Query: 226 NLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIP 285
           +L        +  ++++  L +           +       ++ L  LD  +  +     
Sbjct: 265 DL------LEIDLTHNT-QLIYFQAEGC---RKIKELDVTHNTQLYLLDCQAAGIT---- 310

Query: 286 DSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFL-KLSNCSR 344
           +        L YL L+N +L  +     +  +L++L   + ++ D      +  L+N   
Sbjct: 311 ELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFE 368

Query: 345 DTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFT 391
              + + +    L  +   +T+  S   L  + N +++   +   + 
Sbjct: 369 AEGQTITMPKETL--TNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYD 413

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 75/443 (16%), Positives = 129/443 (29%), Gaps = 111/443 (25%)

Query: 377 DNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSH 436
           D+              T T S  QL+ L  LD  ++S+  M     +  L+ LT L  + 
Sbjct: 17  DDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM---TGIEKLTGLTKLICTS 73

Query: 437 NSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFW 496
           N++                                      + LD+S             
Sbjct: 74  NNI--------------------------------------TTLDLSQN----------- 84

Query: 497 DLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTV-TSLILFK 555
               NL YL    N  T +      K T     ++   N     +      + T L   +
Sbjct: 85  ---TNLTYLACDSNKLTNLDVTPLTKLT----YLNCDTNKLT-KLDVSQNPLLTYLNCAR 136

Query: 556 NMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSM 615
           N  +  +             LD   N    +L        +LT L+ + NK +      +
Sbjct: 137 NTLT-EIDVSHNTQ---LTELDCHLNKKITKLDVT--PQTQLTTLDCSFNKIT-----EL 185

Query: 616 DF--NCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVL 673
           D   N ++  L+   N+ I +L   +    QLT LD   NK++ I        L  L   
Sbjct: 186 DVSQNKLLNRLNCDTNN-ITKLD--LNQNIQLTFLDCSSNKLTEIDVT----PLTQLTYF 238

Query: 674 SLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLR 733
               N       + V  L ++  L   Q ++                + + N  + Y   
Sbjct: 239 DCSVNPLT---ELDVSTLSKLTTLHCIQTDLL-------------EIDLTHNTQLIYFQA 282

Query: 734 TDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLT 793
                   L V              +  +D  +  +     +++    L+ L L+   LT
Sbjct: 283 EGCRKIKELDVTH---------NTQLYLLDCQAAGI--TELDLSQNPKLVYLYLNNTELT 331

Query: 794 GPIPSKIGGLTLLNSLDLSKNML 816
             +   +   T L SL      +
Sbjct: 332 E-LD--VSHNTKLKSLSCVNAHI 351

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 84.9 bits (210), Expect = 4e-18
 Identities = 54/301 (17%), Positives = 90/301 (29%), Gaps = 48/301 (15%)

Query: 94  NLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPA-------FIGSLKNIRHLD 146
                  +      +        +  L++K       +IP+        +  +  ++ L 
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101

Query: 147 LSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSF-----LEYVRLNQVNL 201
           L N   TG  P  L   T      L+      + +  WL++L       L+ + + Q + 
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161

Query: 202 GEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVS--NSV 259
              +   + V   P+L+ L L            S        +L  L L    +   + V
Sbjct: 162 LNFS--CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219

Query: 260 YYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLR 319
              L  +   L  LDLS N L+      +   P+ L+ L+LS   L  VPK         
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK--------- 270

Query: 320 ALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNM 379
                                      L +L L+ N L    P       +  L L  N 
Sbjct: 271 ----------------------GLPAKLSVLDLSYNRLD-RNPSPDELPQVGNLSLKGNP 307

Query: 380 L 380
            
Sbjct: 308 F 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.2 bits (195), Expect = 4e-16
 Identities = 54/319 (16%), Positives = 89/319 (27%), Gaps = 41/319 (12%)

Query: 251 SLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQL----V 306
           S  +   +    L+    SL YL    +        +      SL  L +   ++    +
Sbjct: 26  SAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRIL 85

Query: 307 SVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITL 366
                   +  L+ L  ++  +T   P   L+ +      L IL L +         +  
Sbjct: 86  FGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPD---LNILNLRNVSWATRDAWLAE 142

Query: 367 FSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAH---L 423
                +  L      VL +          + +     L  LD++ N   G          
Sbjct: 143 LQQWLKPGLK-----VLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197

Query: 424 SNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVS 483
                L  L L +  +    G                             + +   LD+S
Sbjct: 198 LKFPTLQVLALRNAGMETPSG---------------------VCSALAAARVQLQGLDLS 236

Query: 484 AAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPP 543
              + D       D    L  LNLS      +   L  K +     +DLS N  +    P
Sbjct: 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLS----VLDLSYNRLDRNPSP 292

Query: 544 IPLT-VTSLILFKNMFSGS 561
             L  V +L L  N F  S
Sbjct: 293 DELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.2 bits (195), Expect = 4e-16
 Identities = 40/209 (19%), Positives = 68/209 (32%), Gaps = 25/209 (11%)

Query: 244 SLAHLDLSLNDVSNSVYYWL--FNSSSSLVYLDLSSNKLQGPIPDSAFPN-PTSLSYLDL 300
           SL  L +    + + + +        S L  L L + ++ G  P          L+ L+L
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 301 SNNQLVSVPKSFRNLC-----RLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSN 355
            N    +       L       L+ L     +  +                L  L L+ N
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA-----LSTLDLSDN 183

Query: 356 MLRGSLPDITL-----FSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVA 410
              G    I+      F +L+ L L +  +          +G  +       QL+ LD++
Sbjct: 184 PELGERGLISALCPLKFPTLQVLALRNAGM-------ETPSGVCSALAAARVQLQGLDLS 236

Query: 411 SNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
            NSL+           S+L  L+LS   L
Sbjct: 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.2 bits (195), Expect = 4e-16
 Identities = 40/223 (17%), Positives = 72/223 (32%), Gaps = 20/223 (8%)

Query: 501 NLYYLNLSHNHFTGMLPDLSQKFTAYPP--EIDLSANSFEGPIPP-----IPLTVTSLIL 553
           +L  L +        +   + +        E+ L      G  PP         +  L L
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 554 FKNMFSGSLSFLCQISD---EHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGK 610
               ++   ++L ++        + L ++            + +  L+ L+L++N   G+
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 611 IPDSMDFNCMMLS----LHLRNN---SFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWI 663
                    +       L LRN    +  G   +   +  QL  LDL HN +     A  
Sbjct: 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248

Query: 664 GDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISG 706
            D    L  L+L          V      ++ VLDLS N +  
Sbjct: 249 CDWPSQLNSLNLSFTGLKQ---VPKGLPAKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 72.6 bits (178), Expect = 6e-14
 Identities = 63/325 (19%), Positives = 108/325 (33%), Gaps = 53/325 (16%)

Query: 366 LFSSLKELHLYDNMLDVLYLNNNRFTGTLT-KSIGQLSQLELLDVASNSLKGMITEAHLS 424
           L ++  EL+     L+ L    +          I +   L+ L V +  +   I    L 
Sbjct: 31  LGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALR 90

Query: 425 --NLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDV 482
              +S L  L L +  +    G+   P  E     L                N  +  +V
Sbjct: 91  VLGISGLQELTLENLEVT---GTAPPPLLEATGPDL----------------NILNLRNV 131

Query: 483 SAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIP 542
           S A     +      L P L  L+++  H      +  + F A    +DLS N   G   
Sbjct: 132 SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS-TLDLSDNPELGERG 190

Query: 543 PIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNL---LSGELPNCSKNWQKLTV 599
            I                    LC +     + L L +      SG     +    +L  
Sbjct: 191 LIS------------------ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQG 232

Query: 600 LNLANNKFSGKIPDSMDFNCM--MLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISG 657
           L+L++N        +   +    + SL+L     + ++P  +    +L+VLDL +N++  
Sbjct: 233 LDLSHNSLRD-AAGAPSCDWPSQLNSLNLSFTG-LKQVPKGL--PAKLSVLDLSYNRLDR 288

Query: 658 IIPAWIGDSLPDLVVLSLRSNNFHG 682
                    LP +  LSL+ N F  
Sbjct: 289 NPSPD---ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 71.1 bits (174), Expect = 2e-13
 Identities = 53/284 (18%), Positives = 93/284 (32%), Gaps = 42/284 (14%)

Query: 530 IDLSANSFEGPIPPIPLTVTSLILFKNMFSGSL--SFLCQISDEHFRYLDLSDNLLSGEL 587
           +D  A+  +       L++  L +        +    L  +     + L L +  ++G  
Sbjct: 52  VDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTA 111

Query: 588 PN--CSKNWQKLTVLNLANNKFSGKIPDSMDFNCMML----SLHLRNNSFIGELPSSVKS 641
           P          L +LNL N  ++ +     +    +      L +     +      V+ 
Sbjct: 112 PPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171

Query: 642 FTQLTVLDLGHNKISG---IIPAWIGDSLPDLVVLSLRSNNFH---GRVPVQVCHLQRIQ 695
           F  L+ LDL  N   G   +I A      P L VL+LR+       G          ++Q
Sbjct: 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ 231

Query: 696 VLDLSQNNISGTVP----QCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSE 751
            LDLS N++            + L ++  N S   + + P                    
Sbjct: 232 GLDLSHNSLRDAAGAPSCDWPSQLNSL--NLSFTGLKQVP-------------------- 269

Query: 752 YRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGP 795
            +     +  +DLS NRL    P    L  + +L+L  N     
Sbjct: 270 -KGLPAKLSVLDLSYNRL-DRNPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 52/294 (17%), Positives = 75/294 (25%), Gaps = 57/294 (19%)

Query: 536 SFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQ 595
           +F  P P        L        G    L          L   D               
Sbjct: 16  NFSDPKPDWSSAFNCLGAADVELYGGGRSL-------EYLLKRVDTEADLGQFTDIIKSL 68

Query: 596 KLTVLNLANNKFSGKIPDSMDFNCMM---LSLHLRNNSFIGELPSSVKSFT--QLTVLDL 650
            L  L +   +   +I         +     L L N    G  P  +   T   L +L+L
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 651 GHNKISGI---IPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGT 707
            +   +     +        P L VLS+   +       QV     +  LDLS N   G 
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 708 VP----QCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSID 763
                  C      +      NA +                               ++  
Sbjct: 189 RGLISALCPLKFPTLQVLALRNAGM-------------------------------ETPS 217

Query: 764 LSSNRLYGEIPEVTSLVGLISLNLSKNSLTG-PIPSKIGGLTLLNSLDLSKNML 816
              + L        + V L  L+LS NSL            + LNSL+LS   L
Sbjct: 218 GVCSAL------AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 82.4 bits (204), Expect = 6e-18
 Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 15/147 (10%)

Query: 248 LDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVS 307
           + L  N +   +    F+    L  +DLS+N++   +   AF    SL+ L L  N++  
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKITE 94

Query: 308 VPKS-FRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITL 366
           +PKS F  L  L+ L  ++N +  L  + F  L N     L +L L  N L+ ++   T 
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN-----LNLLSLYDNKLQ-TIAKGTF 148

Query: 367 --FSSLKELHLYDNMLD----VLYLNN 387
               +++ +HL  N       + +L +
Sbjct: 149 SPLRAIQTMHLAQNPFICDCHLKWLAD 175

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 78.9 bits (195), Expect = 1e-16
 Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 16/141 (11%)

Query: 273 LDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRALYQDSNNLTDL 331
           + L  N ++  IP  AF     L  +DLSNNQ+  +   +F+ L  L +L    N +T+L
Sbjct: 37  IRLEQNTIKV-IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 332 LPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFT 391
             +LF  L +     L++L LN+N +   L     F  L  L+L       L L +N+  
Sbjct: 96  PKSLFEGLFS-----LQLLLLNANKIN-CLRV-DAFQDLHNLNL-------LSLYDNKLQ 141

Query: 392 GTLTKSIGQLSQLELLDVASN 412
                +   L  ++ + +A N
Sbjct: 142 TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 70.4 bits (173), Expect = 7e-14
 Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 16/147 (10%)

Query: 292 PTSLSYLDLSNNQLVSVP-KSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEIL 350
           P +++ + L  N +  +P  +F    +LR +   +N +++L P+ F  L +     L  L
Sbjct: 31  PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS-----LNSL 85

Query: 351 QLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVA 410
            L  N +   LP  +LF  L  L L       L LN N+       +   L  L LL + 
Sbjct: 86  VLYGNKIT-ELPK-SLFEGLFSLQL-------LLLNANKINCLRVDAFQDLHNLNLLSLY 136

Query: 411 SNSLKGMITEAHLSNLSRLTYLDLSHN 437
            N L+  I +   S L  +  + L+ N
Sbjct: 137 DNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 3/130 (2%)

Query: 574 RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIG 633
             + L  N +    P     ++KL  ++L+NN+ S   PD+      + SL L  N  I 
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-IT 93

Query: 634 ELPSSV-KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQ 692
           ELP S+ +    L +L L  NKI+  +       L +L +LSL  N            L+
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152

Query: 693 RIQVLDLSQN 702
            IQ + L+QN
Sbjct: 153 AIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 37/187 (19%), Positives = 59/187 (31%), Gaps = 58/187 (31%)

Query: 141 NIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVN 200
            I  + L         P        L+ +DLS N            Q+S L         
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN------------QISELAP------- 73

Query: 201 LGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVY 260
                        L SL  L L G  +  +  S                           
Sbjct: 74  --------DAFQGLRSLNSLVLYGNKITELPKS--------------------------- 98

Query: 261 YWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLR 319
             LF    SL  L L++NK+   +   AF +  +L+ L L +N+L ++ K +F  L  ++
Sbjct: 99  --LFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155

Query: 320 ALYQDSN 326
            ++   N
Sbjct: 156 TMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 9/126 (7%)

Query: 598 TVLNLANNKFSGKIPDSMDFNCM--MLSLHLRNNSFIGELPSSV-KSFTQLTVLDLGHNK 654
           T + L  N     IP    F+    +  + L NN  I EL     +    L  L L  NK
Sbjct: 35  TEIRLEQNTIK-VIP-PGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNK 91

Query: 655 ISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV-CHLQRIQVLDLSQNNISGTVPQCLN 713
           I+ + P  + + L  L +L L +N  +  + V     L  + +L L  N +        +
Sbjct: 92  ITEL-PKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149

Query: 714 NLTAMT 719
            L A+ 
Sbjct: 150 PLRAIQ 155

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 81.6 bits (202), Expect = 2e-17
 Identities = 43/240 (17%), Positives = 78/240 (32%), Gaps = 37/240 (15%)

Query: 141 NIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVN 200
           + + L L          +   NL ++  + +S +       L+ L   SF          
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSID-----VTLQQLESHSF---------- 76

Query: 201 LGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVY 260
                        L  +T +++R     + I   +         L  L +    +     
Sbjct: 77  -----------YNLSKVTHIEIRNTRNLTYIDPDA--LKELPL-LKFLGIFNTGLKMFPD 122

Query: 261 YWLFNSSSSLVYLDLSSNKLQGPIPDSAFPN-PTSLSYLDLSNNQLVSVPKSFRNLCRLR 319
                S+     L+++ N     IP +AF         L L NN   SV     N  +L 
Sbjct: 123 LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLD 182

Query: 320 ALYQDSNN-LTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDN 378
           A+Y + N  LT +  + F  + +       +L ++   +  +LP       LKEL   + 
Sbjct: 183 AVYLNKNKYLTVIDKDAFGGVYS----GPSLLDVSQTSVT-ALPS-KGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 37/235 (15%), Positives = 77/235 (32%), Gaps = 40/235 (17%)

Query: 497 DLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPP--EIDLSANSFEGPIPPIPLTVTSLILF 554
            L P+   L L   H    +P  +  F+  P    I +S +     +             
Sbjct: 28  SLPPSTQTLKLIETHLR-TIPSHA--FSNLPNISRIYVSIDVTLQQLES----------- 73

Query: 555 KNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCS-KNWQKLTVLNLANNKFSGKIPD 613
            + F   LS +         ++++ +      +   + K    L  L + N       PD
Sbjct: 74  -HSFYN-LSKV--------THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD 122

Query: 614 SMDFNCM--MLSLHLRNNSFIGELPSSVKSFTQLT----VLDLGHNKISGIIPAWIGDSL 667
                       L + +N ++  +P +  +F  L      L L +N  +  +  +  +  
Sbjct: 123 LTKVYSTDIFFILEITDNPYMTSIPVN--AFQGLCNETLTLKLYNNGFT-SVQGYAFNGT 179

Query: 668 PDLVVLSLRSNNFHGRVPVQVCH--LQRIQVLDLSQNNISGTVPQCLNNLTAMTA 720
             L  + L  N +   +             +LD+SQ +++    + L +L  + A
Sbjct: 180 K-LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIA 233

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 100/300 (33%)

Query: 380 LDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
              L L         + +   L  +  + V+ +     +      NLS++T++++ +   
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT-- 90

Query: 440 ILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLS 499
                                                 + +D          P+   +L 
Sbjct: 91  -----------------------------------RNLTYID----------PDALKEL- 104

Query: 500 PNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFS 559
           P L +L + +     M PDL+                                       
Sbjct: 105 PLLKFLGIFNTGLK-MFPDLT-------------------------------------KV 126

Query: 560 GSLSFLCQISDEHFRYLDLSDNLLSGELPN--CSKNWQKLTVLNLANNKFSGKIPDSMDF 617
            S              L+++DN     +P         +   L L NN F+  +      
Sbjct: 127 YSTDIF--------FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFN 177

Query: 618 NCMMLSLHLRNNSFIGELPSSV--KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSL 675
              + +++L  N ++  +        ++  ++LD+    ++  +P+   + L +L+  + 
Sbjct: 178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 22/199 (11%), Positives = 65/199 (32%), Gaps = 21/199 (10%)

Query: 623 SLHLRNNSFIGELPSSV-KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFH 681
           +L L     +  +PS    +   ++ + +  +     + +    +L  +  + +R+    
Sbjct: 35  TLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL 93

Query: 682 GRVPVQVC-HLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDH 740
             +       L  ++ L +    +             +T   S++             D+
Sbjct: 94  TYIDPDALKELPLLKFLGIFNTGLK--------MFPDLTKVYSTDI-----FFILEITDN 140

Query: 741 ALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVT-SLVGLISLNLSKNSLTGPIPSK 799
             +     ++ ++       ++ L +N     +     +   L ++ L+KN     I   
Sbjct: 141 PYMTSIPVNA-FQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKD 198

Query: 800 I--GGLTLLNSLDLSKNML 816
              G  +  + LD+S+  +
Sbjct: 199 AFGGVYSGPSLLDVSQTSV 217

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 81.3 bits (201), Expect = 8e-17
 Identities = 51/292 (17%), Positives = 105/292 (35%), Gaps = 43/292 (14%)

Query: 160 LGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTE 219
              L +   +    +           + L  +  +      +      ++ V  L +L  
Sbjct: 15  DPALANAIKIAAGKS---NVTDTVTQADLDGITTLSAFGTGVTT----IEGVQYLNNLIG 67

Query: 220 LQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNK 279
           L+L+   +      + ++   +   +  L+LS N + N           S+  LDL+S +
Sbjct: 68  LELKDNQI------TDLAPLKNLTKITELELSGNPLKNVSA---IAGLQSIKTLDLTSTQ 118

Query: 280 LQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKL 339
           +    P       ++L  L L  NQ+ ++      L  L+ L   +  ++DL P     L
Sbjct: 119 ITDVTP---LAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDLTP-----L 169

Query: 340 SNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNM------------LDVLYLNN 387
           +N S+  L  L+ + N +   +  +    +L E+HL +N             L ++ L N
Sbjct: 170 ANLSK--LTTLKADDNKIS-DISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN 226

Query: 388 NRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
              T    + +   + L + +V        I  A +S+       +L+ N  
Sbjct: 227 QTIT---NQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLT 275

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.5 bits (173), Expect = 3e-13
 Identities = 45/231 (19%), Positives = 84/231 (36%), Gaps = 25/231 (10%)

Query: 109 SSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQY 168
            +   L  +  L+          I   +  L N+  L+L +   T   P  L NLT +  
Sbjct: 35  VTQADLDGITTLSAFGTGV--TTIEG-VQYLNNLIGLELKDNQITDLAP--LKNLTKITE 89

Query: 169 LDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLP 228
           L+LS N     K +  ++ L  ++ + L    + +    +  ++ L +L  L L    + 
Sbjct: 90  LELSGN---PLKNVSAIAGLQSIKTLDLTSTQITD----VTPLAGLSNLQVLYLDLNQI- 141

Query: 229 SVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSA 288
                +++S      +L +L +    VS+        + S L  L    NK+      S 
Sbjct: 142 -----TNISPLAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKISDI---SP 190

Query: 289 FPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKL 339
             +  +L  + L NNQ+  V     N   L  +   +  +T+        L
Sbjct: 191 LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQPVFYNNNL 240

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 55/350 (15%), Positives = 107/350 (30%), Gaps = 64/350 (18%)

Query: 275 LSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPN 334
                +    PD A  N      +    + +     +  +L  +  L      +T +   
Sbjct: 4   TQPTAINVIFPDPALAN---AIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIEG- 58

Query: 335 LFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTL 394
               +   +   L  L+L  N +   L  +   + + EL L  N L  +           
Sbjct: 59  ----VQYLN--NLIGLELKDNQIT-DLAPLKNLTKITELELSGNPLKNV----------- 100

Query: 395 TKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFE-- 452
             +I  L  ++ LD+ S  +  +     L+ LS L  L L  N +        +      
Sbjct: 101 -SAIAGLQSIKTLDLTSTQITDVTP---LAGLSNLQVLYLDLNQITN------ISPLAGL 150

Query: 453 --LNIIRLGACK----QGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLN 506
             L  + +G  +            L   +K + L     +ISD  P       PNL  ++
Sbjct: 151 TNLQYLSIGNAQVSDLTP------LANLSKLTTLKADDNKISDISP---LASLPNLIEVH 201

Query: 507 LSHNHFT-----GMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGS 561
           L +N  +         +L          + L+  +           +    + K      
Sbjct: 202 LKNNQISDVSPLANTSNLF--------IVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

Query: 562 LSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKI 611
           ++      +  +   +L+ NL S  + N S  + +          FSG +
Sbjct: 254 IAPATISDNGTYASPNLTWNLTS-FINNVSYTFNQSVTFKNTTVPFSGTV 302

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.9 bits (130), Expect = 8e-08
 Identities = 47/291 (16%), Positives = 101/291 (34%), Gaps = 61/291 (20%)

Query: 529 EIDLSANSFEGPIPPIPLT-VTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGEL 587
           +I    ++    +    L  +T+L  F    + ++  +  ++  +   L+L DN ++ +L
Sbjct: 23  KIAAGKSNVTDTVTQADLDGITTLSAFGTGVT-TIEGVQYLN--NLIGLELKDNQIT-DL 78

Query: 588 PNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMML-SLHLRNNSFIGELPSSVKSFTQLT 646
                N  K+T L L+ N        +       + +L L +   I ++ + +   + L 
Sbjct: 79  APLK-NLTKITELELSGNPLKNVSAIA---GLQSIKTLDLTSTQ-ITDV-TPLAGLSNLQ 132

Query: 647 VLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISG 706
           VL L  N+I+ I P      L +L  LS+ +       P+   +L ++  L    N IS 
Sbjct: 133 VLYLDLNQITNISPL---AGLTNLQYLSIGNAQVSDLTPLA--NLSKLTTLKADDNKISD 187

Query: 707 TVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSS 766
             P  L +L  +                                           + L +
Sbjct: 188 ISP--LASLPNLI-----------------------------------------EVHLKN 204

Query: 767 NRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLM 817
           N++  ++  + +   L  + L+  ++T         L + N +       +
Sbjct: 205 NQI-SDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.5 bits (129), Expect = 9e-08
 Identities = 42/250 (16%), Positives = 92/250 (36%), Gaps = 43/250 (17%)

Query: 571 EHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSL---HLR 627
            +   +    + ++  +     +   +T L+      +     +++    + +L    L+
Sbjct: 19  ANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVT-----TIEGVQYLNNLIGLELK 71

Query: 628 NNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQ 687
           +N  I +L + +K+ T++T L+L  N +  +        L  +  L L S       P+ 
Sbjct: 72  DNQ-ITDL-APLKNLTKITELELSGNPLKNVSAI---AGLQSIKTLDLTSTQITDVTPLA 126

Query: 688 VCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTA-NKSSNAMIRYPLRTDYYNDHALLVWK 746
              L  +QVL L  N I+   P  L  LT +   +  +                     +
Sbjct: 127 --GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNA--------------------Q 162

Query: 747 RKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLL 806
             D      L  + ++    N++  +I  + SL  LI ++L  N ++   P  +   + L
Sbjct: 163 VSDLTPLANLSKLTTLKADDNKI-SDISPLASLPNLIEVHLKNNQISDVSP--LANTSNL 219

Query: 807 NSLDLSKNML 816
             + L+   +
Sbjct: 220 FIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 35/178 (19%), Positives = 61/178 (34%), Gaps = 29/178 (16%)

Query: 637 SSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQV 696
               +      +  G + ++  +       L  +  LS           VQ  +L  +  
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVTQ---ADLDGITTLSAFGTGVTTIEGVQ--YLNNLIG 67

Query: 697 LDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTL 756
           L+L  N I  T    L NLT               +     + + L     K+      L
Sbjct: 68  LELKDNQI--TDLAPLKNLTK--------------ITELELSGNPL-----KNVSAIAGL 106

Query: 757 GLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKN 814
             +K++DL+S ++  ++  +  L  L  L L  N +T   P  + GLT L  L +   
Sbjct: 107 QSIKTLDLTSTQI-TDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNA 161

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 33/225 (14%), Positives = 68/225 (30%), Gaps = 55/225 (24%)

Query: 592 KNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651
                   +    +  +  +  +      + +L       +  +   V+    L  L+L 
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQADLDG--ITTLSAFGTG-VTTI-EGVQYLNNLIGLELK 71

Query: 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQC 711
            N+I+ + P     +L  +  L L  N    +    +  LQ I+ LDL+   I+   P  
Sbjct: 72  DNQITDLAPL---KNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP-- 124

Query: 712 LNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYG 771
           L  L+ +                                           + L  N++  
Sbjct: 125 LAGLSNLQ-----------------------------------------VLYLDLNQI-T 142

Query: 772 EIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
            I  +  L  L  L++    ++   P  +  L+ L +L    N +
Sbjct: 143 NISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 33/245 (13%)

Query: 479 ELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFT-----GMLPDLSQKFTAYPPEIDLS 533
           ++    + ++DTV     DL   +  L+      T       L +L          ++L 
Sbjct: 23  KIAAGKSNVTDTVT--QADL-DGITTLSAFGTGVTTIEGVQYLNNLI--------GLELK 71

Query: 534 ANSFEGPIPPIPLT-VTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSK 592
            N      P   LT +T L L  N    ++S +  +     + LDL+   ++ ++   + 
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLK-NVSAIAGLQ--SIKTLDLTSTQIT-DVTPLAG 127

Query: 593 NWQKLTVLNLANNKFSGKIPDSMDFNCMML-SLHLRNNSFIGELPSSVKSFTQLTVLDLG 651
               L VL L  N+ +   P +       L  L + N   + +L + + + ++LT L   
Sbjct: 128 L-SNLQVLYLDLNQITNISPLA---GLTNLQYLSIGNAQ-VSDL-TPLANLSKLTTLKAD 181

Query: 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQC 711
            NKIS I P     SLP+L+ + L++N      P+   +   + ++ L+   I+      
Sbjct: 182 DNKISDISPL---ASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLTNQTITNQPVFY 236

Query: 712 LNNLT 716
            NNL 
Sbjct: 237 NNNLV 241

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 83.6 bits (206), Expect = 8e-17
 Identities = 52/352 (14%), Positives = 119/352 (33%), Gaps = 45/352 (12%)

Query: 243 RSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPD-SAFPNPTSLSYLDLS 301
                 +L    V+++V     N  +S+  +  +++     I          +++ L L+
Sbjct: 21  AETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSD----IKSVQGIQYLPNVTKLFLN 73

Query: 302 NNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSL 361
            N+L  + K   NL  L  L+ D N + DL       L +  +  L+ L L  N +   +
Sbjct: 74  GNKLTDI-KPLTNLKNLGWLFLDENKIKDLSS-----LKDLKK--LKSLSLEHNGIS-DI 124

Query: 362 PDITLFSSLKELHLYDNM------------LDVLYLNNNRFTGTLTKSIGQLSQLELLDV 409
             +     L+ L+L +N             LD L L +N+ +  +   +  L++L+ L +
Sbjct: 125 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYL 182

Query: 410 ASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPK 469
           + N +  +     L+ L  L  L+L     +    +        N ++          P+
Sbjct: 183 SKNHISDL---RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS--LVTPE 237

Query: 470 WLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPE 529
            +     + + +     +   +P +  ++S    ++                + T    E
Sbjct: 238 IISDDGDYEKPN-----VKWHLPEFTNEVS----FIFYQPVTIGKAKARFHGRVTQPLKE 288

Query: 530 IDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDN 581
           +   +   +G +    +   + I      +           E     + + N
Sbjct: 289 VYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTEKNGGHEWNFN 340

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.0 bits (194), Expect = 3e-15
 Identities = 42/282 (14%), Positives = 87/282 (30%), Gaps = 37/282 (13%)

Query: 109 SSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQY 168
                       N+K               L +I  +  +N+         +  L ++  
Sbjct: 15  FPDDAFAETIKDNLKKKSV--TDAV-TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTK 69

Query: 169 LDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLP 228
           L L+ N       ++ L+ L  L ++ L++  + +    L  +  L  L  L L    + 
Sbjct: 70  LFLNGN---KLTDIKPLTNLKNLGWLFLDENKIKD----LSSLKDLKKLKSLSLEHNGI- 121

Query: 229 SVIASSSVSFSNSSRSLAHLDLSLN---DVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIP 285
                S ++       L  L L  N   D++        +  + L  L L  N++     
Sbjct: 122 -----SDINGLVHLPQLESLYLGNNKITDITV------LSRLTKLDTLSLEDNQISDI-- 168

Query: 286 DSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRD 345
                  T L  L LS N +  + ++   L  L  L   S    +   N    L      
Sbjct: 169 -VPLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVV---- 222

Query: 346 TLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNN 387
               ++     L  +   I+     ++ ++  ++ +     +
Sbjct: 223 -PNTVKNTDGSLV-TPEIISDDGDYEKPNVKWHLPEFTNEVS 262

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.1 bits (176), Expect = 4e-13
 Identities = 62/353 (17%), Positives = 109/353 (30%), Gaps = 70/353 (19%)

Query: 273 LDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLL 332
               S  ++   PD AF         +L    +     +   L  +  +  +++++  + 
Sbjct: 4   TITVSTPIKQIFPDDAFAE---TIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ 59

Query: 333 PNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTG 392
                 +       +  L LN N L     DI   ++LK L         L+L+ N+   
Sbjct: 60  G-----IQYLPN--VTKLFLNGNKLT----DIKPLTNLKNLG-------WLFLDENKIKD 101

Query: 393 TLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFE 452
               S+  L +L+ L +  N +  +     L +L +L  L L +N +             
Sbjct: 102 L--SSLKDLKKLKSLSLEHNGISDI---NGLVHLPQLESLYLGNNKIT------------ 144

Query: 453 LNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHF 512
            +I  L                 K   L +   +ISD VP         L  L LS NH 
Sbjct: 145 -DITVLSRLT-------------KLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHI 187

Query: 513 T-----GMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQ 567
           +       L +L          ++L +             +      KN   GSL     
Sbjct: 188 SDLRALAGLKNLD--------VLELFSQECLNKPINHQSNLVVPNTVKN-TDGSLVTPEI 238

Query: 568 ISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCM 620
           ISD+           L       S  + +   +  A  +F G++   +     
Sbjct: 239 ISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYT 291

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.9 bits (147), Expect = 1e-09
 Identities = 40/248 (16%), Positives = 79/248 (31%), Gaps = 35/248 (14%)

Query: 571 EHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNS 630
                 +L    ++  +         +  +   N+     +   + +   +  L L  N 
Sbjct: 21  AETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNK 76

Query: 631 FIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCH 690
            + ++   + +   L  L L  NKI  +        L  L  LSL  N       +   H
Sbjct: 77  -LTDI-KPLTNLKNLGWLFLDENKIKDLSSL---KDLKKLKSLSLEHNGISDINGLV--H 129

Query: 691 LQRIQVLDLSQNNISGTVPQCLNNLTAMTA-NKSSNAMIRYPLRTDYYNDHALLVWKRKD 749
           L +++ L L  N I  T    L+ LT +   +   N +                     D
Sbjct: 130 LPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQI--------------------SD 167

Query: 750 SEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSL 809
                 L  ++++ LS N +  ++  +  L  L  L L          +    L + N++
Sbjct: 168 IVPLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226

Query: 810 DLSKNMLM 817
             +   L+
Sbjct: 227 KNTDGSLV 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.7 bits (144), Expect = 2e-09
 Identities = 44/225 (19%), Positives = 83/225 (36%), Gaps = 33/225 (14%)

Query: 592 KNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651
             + +    NL     +  +  +   +   +     NNS I  +   ++    +T L L 
Sbjct: 18  DAFAETIKDNLKKKSVTDAVTQNELNSIDQIIA---NNSDIKSV-QGIQYLPNVTKLFLN 73

Query: 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQC 711
            NK++ I P     +L +L  L L  N       ++   L++++ L L  N I  +    
Sbjct: 74  GNKLTDIKPL---TNLKNLGWLFLDENKIKDLSSLK--DLKKLKSLSLEHNGI--SDING 126

Query: 712 LNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYG 771
           L +L  + +    N  I                    D    + L  + ++ L  N++  
Sbjct: 127 LVHLPQLESLYLGNNKI-------------------TDITVLSRLTKLDTLSLEDNQIS- 166

Query: 772 EIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
           +I  +  L  L +L LSKN ++      + GL  L+ L+L     
Sbjct: 167 DIVPLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQEC 209

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 57.0 bits (137), Expect = 2e-08
 Identities = 49/190 (25%), Positives = 78/190 (41%), Gaps = 16/190 (8%)

Query: 529 EIDLSANSFEGPIPPIPLT-VTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGEL 587
           + +L   S    +    L  +  +I   +    S+  +  +   +   L L+ N L+ ++
Sbjct: 25  KDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQGIQYLP--NVTKLFLNGNKLT-DI 80

Query: 588 PNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTV 647
                N + L  L L  NK    +    D   +  SL L +N  I ++ + +    QL  
Sbjct: 81  KP-LTNLKNLGWLFLDENKIK-DLSSLKDLKKLK-SLSLEHNG-ISDI-NGLVHLPQLES 135

Query: 648 LDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGT 707
           L LG+NKI+ I        L  L  LSL  N     VP+    L ++Q L LS+N+IS  
Sbjct: 136 LYLGNNKITDITVL---SRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHISDL 190

Query: 708 VP-QCLNNLT 716
                L NL 
Sbjct: 191 RALAGLKNLD 200

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 55.5 bits (133), Expect = 4e-08
 Identities = 34/180 (18%), Positives = 67/180 (37%), Gaps = 29/180 (16%)

Query: 637 SSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQV 696
               +F +    +L    ++  +     + L  +  +   +++      +Q  +L  +  
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSVQGIQ--YLPNVTK 69

Query: 697 LDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTL 756
           L L+ N ++   P  L NL                L   + +++ +     KD      L
Sbjct: 70  LFLNGNKLTDIKP--LTNLKN--------------LGWLFLDENKI-----KDLSSLKDL 108

Query: 757 GLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
             +KS+ L  N +  +I  +  L  L SL L  N +T      +  LT L++L L  N +
Sbjct: 109 KKLKSLSLEHNGI-SDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQI 165

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 53.6 bits (128), Expect = 2e-07
 Identities = 47/326 (14%), Positives = 92/326 (28%), Gaps = 91/326 (27%)

Query: 318 LRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYD 377
           +      S  +  + P         +        L    +          +S+ ++   +
Sbjct: 1   MGETITVSTPIKQIFP-----DDAFAE--TIKDNLKKKSVT-DAVTQNELNSIDQIIANN 52

Query: 378 NMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHN 437
           + +  +            + I  L  +  L +  N L  +     L+NL  L +L L  N
Sbjct: 53  SDIKSV------------QGIQYLPNVTKLFLNGNKLTDI---KPLTNLKNLGWLFLDEN 97

Query: 438 SLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWD 497
            +              ++  L   K+       L+       L +    ISD        
Sbjct: 98  KIK-------------DLSSLKDLKK-------LK------SLSLEHNGISDING--LVH 129

Query: 498 LSPNLYYLNLSHNHFTGM-----LPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLI 552
           L P L  L L +N  T +     L  L          + L  N            ++ ++
Sbjct: 130 L-PQLESLYLGNNKITDITVLSRLTKLD--------TLSLEDNQ-----------ISDIV 169

Query: 553 LFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIP 612
               +                + L LS N +S +L       + L VL L + +   K  
Sbjct: 170 PLAGL-------------TKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPI 214

Query: 613 DSMDFNCMMLSLHLRNNSFIGELPSS 638
           +      +  ++   + S +     S
Sbjct: 215 NHQSNLVVPNTVKNTDGSLVTPEIIS 240

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 80.4 bits (198), Expect = 8e-16
 Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 27/228 (11%)

Query: 501 NLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSG 560
               L L+  + + +  +L  + T     ++++ N+    +P +P ++  L    N  S 
Sbjct: 60  QFSELQLNRLNLSSLPDNLPPQIT----VLEITQNALI-SLPELPASLEYLDACDNRLST 114

Query: 561 SLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCM 620
                  +     ++LD+ +N L+  LP        L  +N  NN+ +  +P+       
Sbjct: 115 LPELPASL-----KHLDVDNNQLT-MLPEL---PALLEYINADNNQLT-MLPELP---TS 161

Query: 621 MLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGD---SLPDLVVLSLRS 677
           +  L +RNN  +  LP   +S   L  LD+  N +  + PA       S    +    R 
Sbjct: 162 LEVLSVRNNQ-LTFLPELPES---LEALDVSTNLLESL-PAVPVRNHHSEETEIFFRCRE 216

Query: 678 NNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSN 725
           N     +P  +  L     + L  N +S  + + L+  TA        
Sbjct: 217 NRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPR 263

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 78.1 bits (192), Expect = 4e-15
 Identities = 44/318 (13%), Positives = 93/318 (29%), Gaps = 49/318 (15%)

Query: 103 LRGNISSSL--IGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQL 160
            R    S L    +   + L +   +     +P  +     I  L+++       +P   
Sbjct: 45  NRNEAVSLLKECLINQFSELQLNRLNL--SSLPDNLP--PQITVLEITQNALI-SLPELP 99

Query: 161 GNLTSLQYLDLSFNFDMLSKKLEWL-SQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTE 219
            +L   +YLD   N      +L  L    + L+++ ++   L        +      L  
Sbjct: 100 ASL---EYLDACDN------RLSTLPELPASLKHLDVDNNQLTM------LPELPALLEY 144

Query: 220 LQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNK 279
           +      L                SL  L +  N ++      L     SL  LD+S+N 
Sbjct: 145 INADNNQL--------TMLPELPTSLEVLSVRNNQLTF-----LPELPESLEALDVSTNL 191

Query: 280 LQGPIPDSAFPN---PTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLF 336
           L+  +P     N     +  +     N++  +P++  +L     +  + N L+  +    
Sbjct: 192 LES-LPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESL 250

Query: 337 LKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTK 396
            + +          Q + +  R          +     L D +      N       +  
Sbjct: 251 SQQT---------AQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWH 301

Query: 397 SIGQLSQLELLDVASNSL 414
           +              + L
Sbjct: 302 AFEHEEHANTFSAFLDRL 319

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 76.5 bits (188), Expect = 1e-14
 Identities = 59/345 (17%), Positives = 108/345 (31%), Gaps = 91/345 (26%)

Query: 291 NPTSLSYLDLSNNQLVSVPKSF----RNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDT 346
           N  SLS  +   N +      +        +     ++ N    LL    +         
Sbjct: 9   NNFSLS-QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN-------Q 60

Query: 347 LEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLEL 406
              LQLN   L  SLPD  L   +  L +  N L            +L +    L  L+ 
Sbjct: 61  FSELQLNRLNLS-SLPD-NLPPQITVLEITQNALI-----------SLPELPASLEYLDA 107

Query: 407 LDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQ 466
            D   ++L            + L +LD+ +N L                         P+
Sbjct: 108 CDNRLSTL--------PELPASLKHLDVDNNQL----------------------TMLPE 137

Query: 467 FPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAY 526
            P  L+       ++    +++  +P    +L  +L  L++ +N  T  LP+L +     
Sbjct: 138 LPALLE------YINADNNQLT-MLP----ELPTSLEVLSVRNNQLTF-LPELPESLE-- 183

Query: 527 PPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGE 586
              +D+S N  E  +P +P+                        E   +    +N ++  
Sbjct: 184 --ALDVSTNLLES-LPAVPVRNHHSE------------------ETEIFFRCRENRIT-H 221

Query: 587 LPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSF 631
           +P    +      + L +N  S +I +S+         H     F
Sbjct: 222 IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 74.2 bits (182), Expect = 6e-14
 Identities = 53/296 (17%), Positives = 97/296 (32%), Gaps = 47/296 (15%)

Query: 530 IDLSANSFEGPIPPIPLTV-------TSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNL 582
             LS NSF   I                  L     + ++S L +     F  L L+   
Sbjct: 11  FSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLN 70

Query: 583 LSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSF 642
           LS  LP+      ++TVL +  N     +P+       +  L   +N  +  LP      
Sbjct: 71  LS-SLPDNL--PPQITVLEITQNALI-SLPELP---ASLEYLDACDNR-LSTLPEL---P 119

Query: 643 TQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQN 702
             L  LD+ +N+++      + +    L  ++  +N     +P     L+    L +  N
Sbjct: 120 ASLKHLDVDNNQLT-----MLPELPALLEYINADNNQLT-MLPELPTSLEV---LSVRNN 170

Query: 703 NISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSI 762
            ++  +P+   +L A+    S+N +   P                      ++       
Sbjct: 171 QLT-FLPELPESLEALDV--STNLLESLP------AVPVRNH---------HSEETEIFF 212

Query: 763 DLSSNRLYGEIPE-VTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLM 817
               NR+   IPE + SL    ++ L  N L+  I   +   T        +    
Sbjct: 213 RCRENRI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 71.5 bits (175), Expect = 6e-13
 Identities = 42/262 (16%), Positives = 89/262 (33%), Gaps = 50/262 (19%)

Query: 562 LSFLCQISDEHFRYLDLSDNLLSG---ELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFN 618
           +S +  I++      +   N +SG   +  +    W+K  +     N+    + + +   
Sbjct: 1   MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ 60

Query: 619 CMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSN 678
                L L   + +  LP ++    Q+TVL++  N +   +P         L  L    N
Sbjct: 61  --FSELQLNRLN-LSSLPDNL--PPQITVLEITQNALI-SLPELPAS----LEYLDACDN 110

Query: 679 NFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYN 738
                +P     L+    LD+  N ++  +P+    L  +  N  +N +   P       
Sbjct: 111 RLS-TLPELPASLKH---LDVDNNQLT-MLPELPALLEYI--NADNNQLTMLP------- 156

Query: 739 DHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPS 798
                               ++ + + +N+L   +PE      L +L++S N L   +P+
Sbjct: 157 ---------------ELPTSLEVLSVRNNQL-TFLPE--LPESLEALDVSTNLLES-LPA 197

Query: 799 KIGGLT----LLNSLDLSKNML 816
                             +N +
Sbjct: 198 VPVRNHHSEETEIFFRCRENRI 219

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 16/165 (9%)

Query: 231 IASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFP 290
           +A+ S +       L  L+L  N +  ++   +F+  + L  L L++N+L   +P   F 
Sbjct: 47  LATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLAS-LPLGVFD 104

Query: 291 NPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEI 349
           + T L  L L  NQL S+P   F  L +L+ L  ++N L  +    F KL+N     L+ 
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN-----LQT 159

Query: 350 LQLNSNMLRGSLPDITL--FSSLKELHLYDNMLD-----VLYLNN 387
           L L++N L+ S+P         L+ + L+ N  D     +LYL+ 
Sbjct: 160 LSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQ 203

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 62.4 bits (152), Expect = 6e-11
 Identities = 47/168 (27%), Positives = 64/168 (38%), Gaps = 41/168 (24%)

Query: 273 LDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTDL 331
           LDL S  L   + D+ F   T L++L+L  NQL ++    F +L  L  L   +N L  L
Sbjct: 40  LDLQSTGLAT-LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98

Query: 332 LPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFT 391
              +F  L+      L+ L L  N L+ SLP   +F  L +L         L LN N   
Sbjct: 99  PLGVFDHLTQ-----LDKLYLGGNQLK-SLPS-GVFDRLTKLKE-------LRLNTN--- 141

Query: 392 GTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
                   QL  +                     L+ L  L LS N L
Sbjct: 142 --------QLQSIP--------------AGAFDKLTNLQTLSLSTNQL 167

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 48/212 (22%), Positives = 67/212 (31%), Gaps = 63/212 (29%)

Query: 145 LDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEA 204
           LDL + G           LT L +L+L +N            QL  L             
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYN------------QLQTLS------------ 75

Query: 205 TDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLF 264
                V   L  L  L L    L S+                                +F
Sbjct: 76  ---AGVFDDLTELGTLGLANNQLASLPLG-----------------------------VF 103

Query: 265 NSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQ 323
           +  + L  L L  N+L+  +P   F   T L  L L+ NQL S+P   F  L  L+ L  
Sbjct: 104 DHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162

Query: 324 DSNNLTDLLPNLFLKLSNCSRDTLEILQLNSN 355
            +N L  +    F +L       L+ + L  N
Sbjct: 163 STNQLQSVPHGAFDRLGK-----LQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 41/146 (28%), Positives = 58/146 (39%), Gaps = 5/146 (3%)

Query: 576 LDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGEL 635
           LDL    L+       +   KLT LNL  N+         D    + +L L NN  +  L
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASL 98

Query: 636 PSSV-KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVC-HLQR 693
           P  V    TQL  L LG N++   +P+ + D L  L  L L +N     +P      L  
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTN 156

Query: 694 IQVLDLSQNNISGTVPQCLNNLTAMT 719
           +Q L LS N +        + L  + 
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRLGKLQ 182

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 623 SLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHG 682
            L L++        ++ +  T+LT L+L +N++   + A + D L +L  L L +N    
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLA- 96

Query: 683 RVPVQV-CHLQRIQVLDLSQNNI 704
            +P+ V  HL ++  L L  N +
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQL 119

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 72.4 bits (178), Expect = 4e-14
 Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 19/176 (10%)

Query: 264 FNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQ 323
            N  +S+  +  +++ ++            ++ YL L  N+L  +  + + L  L  L  
Sbjct: 37  QNELNSIDQIIANNSDIKSV---QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLIL 92

Query: 324 DSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVL 383
             N L  L   +F KL+N     L+ L L  N L+ SLPD  +F  L  L         L
Sbjct: 93  TGNQLQSLPNGVFDKLTN-----LKELVLVENQLQ-SLPD-GVFDKLTNL-------TYL 138

Query: 384 YLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
            L +N+          +L+ L  LD++ N L+  + E     L++L  L L  N L
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 53/173 (30%), Positives = 80/173 (46%), Gaps = 23/173 (13%)

Query: 213 QLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSN-SVYYWLFNSSSSLV 271
           +L S+ ++     ++ SV             ++ +L L  N + + S         ++L 
Sbjct: 39  ELNSIDQIIANNSDIKSVQGI------QYLPNVRYLALGGNKLHDISA----LKELTNLT 88

Query: 272 YLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTD 330
           YL L+ N+LQ  +P+  F   T+L  L L  NQL S+P   F  L  L  L    N L  
Sbjct: 89  YLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS 147

Query: 331 LLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLF---SSLKELHLYDNML 380
           L   +F KL+N     L  L L+ N L+ SLP+  +F   + LK+L LY N L
Sbjct: 148 LPKGVFDKLTN-----LTELDLSYNQLQ-SLPE-GVFDKLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 42/173 (24%), Positives = 70/173 (40%), Gaps = 21/173 (12%)

Query: 267 SSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSN 326
            +  +  +L    +             S+  +  +N+ + SV    + L  +R L    N
Sbjct: 18  FAETIKANLKKKSVTDA---VTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGN 73

Query: 327 NLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLN 386
            L D+  +   +L+N     L  L L  N L+ SLP+  +F  L         L  L L 
Sbjct: 74  KLHDI--SALKELTN-----LTYLILTGNQLQ-SLPN-GVFDKLTN-------LKELVLV 117

Query: 387 NNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
            N+          +L+ L  L++A N L+  + +     L+ LT LDLS+N L
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQL 169

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 57/241 (23%), Positives = 88/241 (36%), Gaps = 56/241 (23%)

Query: 80  GVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSL 139
                         NL+ +S          +   L  ++ +    +D   K +      L
Sbjct: 16  DAFAETIK-----ANLKKKSVTDA-----VTQNELNSIDQIIANNSDI--KSVQGI-QYL 62

Query: 140 KNIRHLDLSNAGFTGRVPYQLG---NLTSLQYLDLSFN---------FDMLSKKLEWLSQ 187
            N+R+L L            +     LT+L YL L+ N         FD L+  L+ L  
Sbjct: 63  PNVRYLALGGNKLH-----DISALKELTNLTYLILTGNQLQSLPNGVFDKLTN-LKELV- 115

Query: 188 LSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCN----LPSVIASSSVSFSNSSR 243
              L   +L  +  G       V  +L +LT L L   N    LP  +     +      
Sbjct: 116 ---LVENQLQSLPDG-------VFDKLTNLTYLNLAH-NQLQSLPKGVFDKLTN------ 158

Query: 244 SLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNN 303
            L  LDLS N +  S+   +F+  + L  L L  N+L+  +PD  F   TSL Y+ L +N
Sbjct: 159 -LTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 215

Query: 304 Q 304
            
Sbjct: 216 P 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 30/106 (28%), Positives = 41/106 (38%), Gaps = 3/106 (2%)

Query: 574 RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIG 633
            YL L+ N L             L  L L  N+         D    +  L+L +N  + 
Sbjct: 88  TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQ 146

Query: 634 ELPSSV-KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSN 678
            LP  V    T LT LDL +N++   +P  + D L  L  L L  N
Sbjct: 147 SLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQN 191

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 74.0 bits (181), Expect = 9e-14
 Identities = 49/373 (13%), Positives = 97/373 (26%), Gaps = 39/373 (10%)

Query: 45  ERQALLMFKQGLIDEYGHLSSWG------NEDDKKDCCKWRGVSCSNQTGHVTMLNLQFR 98
             Q+   + + L+                 E     C        S     + M++    
Sbjct: 224 NDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPL 283

Query: 99  SYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPY 158
           S      +  +    +   +      ND   +     I +  + +   +           
Sbjct: 284 SVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCR 343

Query: 159 QLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLT 218
                  L   +LS     + +               L ++        L ++  + +L 
Sbjct: 344 DSATDEQLFRCELSVEKSTVLQSE-------LESCKELQELEPENKWCLLTIILLMRALD 396

Query: 219 ELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSN 278
            L      L       +V    ++         L + S     +          L L+  
Sbjct: 397 PLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVR-----VLHLAHK 451

Query: 279 KLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLK 338
            L              +++LDLS+N+L ++P +   L  L  L    N L ++       
Sbjct: 452 DLTVLCHLEQLLL---VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG--VAN 506

Query: 339 LSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGT---LT 395
           L       L+ L L +N L+     I    S   L        +L L  N          
Sbjct: 507 LPR-----LQELLLCNNRLQ-QSAAIQPLVSCPRLV-------LLNLQGNSLCQEEGIQE 553

Query: 396 KSIGQLSQLELLD 408
           +    L  +  + 
Sbjct: 554 RLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 62.5 bits (151), Expect = 3e-10
 Identities = 46/308 (14%), Positives = 86/308 (27%), Gaps = 60/308 (19%)

Query: 187 QLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLA 246
            +    +V   +  L         V        L +    L     +       S   L 
Sbjct: 243 DVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLC 302

Query: 247 HLDLSL--NDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQ 304
            L  +   + +    +  ++  S S     L  ++ +    DSA      L   +LS  +
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSA--TDEQLFRCELSVEK 360

Query: 305 LVSVPKSFRNLCRLRALYQDS---------------------------NNLTDLLP---- 333
              +     +   L+ L  ++                           + L  + P    
Sbjct: 361 STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 420

Query: 334 ---------NLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDN------ 378
                     L   +       + +L L    L   L  +     +  L L  N      
Sbjct: 421 YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRALP 479

Query: 379 -------MLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTY 431
                   L+VL  ++N     +   +  L +L+ L + +N L+       L +  RL  
Sbjct: 480 PALAALRCLEVLQASDNALE-NV-DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 537

Query: 432 LDLSHNSL 439
           L+L  NSL
Sbjct: 538 LNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 48.6 bits (115), Expect = 7e-06
 Identities = 24/114 (21%), Positives = 50/114 (43%), Gaps = 5/114 (4%)

Query: 565 LCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSL 624
           + ++     R L L+   L+  L +       +T L+L++N+    +P ++     +  L
Sbjct: 435 VLKMEYADVRVLHLAHKDLT-VLCHLE-QLLLVTHLDLSHNRLR-ALPPALAALRCLEVL 491

Query: 625 HLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSN 678
              +N  +  +   V +  +L  L L +N++          S P LV+L+L+ N
Sbjct: 492 QASDN-ALENVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.1 bits (106), Expect = 8e-05
 Identities = 36/273 (13%), Positives = 75/273 (27%), Gaps = 12/273 (4%)

Query: 549 TSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFS 608
             L +  +      S +  +           +          S  W         N++  
Sbjct: 255 ACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLP 314

Query: 609 GKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLP 668
                 +          +              +  QL   +L   K + ++ + +  S  
Sbjct: 315 QHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELE-SCK 372

Query: 669 DLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVP-QCLNNLTAMTANKSSNAM 727
           +L  L   +          +  ++ +  L   +  +      + ++ + A   +   +  
Sbjct: 373 ELQELEPENKWCL---LTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 429

Query: 728 IRYPLRTDYYNDHALLVWKRKDS----EYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLI 783
           +              ++           +   L LV  +DLS NRL    P + +L  L 
Sbjct: 430 LLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLE 489

Query: 784 SLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
            L  S N+L       +  L  L  L L  N L
Sbjct: 490 VLQASDNALE--NVDGVANLPRLQELLLCNNRL 520

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.4 bits (104), Expect = 1e-04
 Identities = 47/361 (13%), Positives = 96/361 (26%), Gaps = 59/361 (16%)

Query: 466 QFPKWL----QTQNKFSELDVSAAEISDTVP-NWFWDLSPNLYYLNLSHNHFTGMLPDLS 520
            + +WL    +  +    + VS  E   +V  +    +   +  L L  +     +   +
Sbjct: 230 FYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRT 289

Query: 521 QKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSD 580
                 P  + L           +P     +I   +        L    +   R     +
Sbjct: 290 PDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDE 349

Query: 581 NLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVK 640
            L        S     +    L + K   ++     +  + + L +R    +     +++
Sbjct: 350 QLFR---CELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ 406

Query: 641 SFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLR------SNNFHGRVPVQVCHLQRI 694
            F+ L  +D         + +        L +          ++     +   +  L  +
Sbjct: 407 YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC-HLEQLLLV 465

Query: 695 QVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRN 754
             LDLS N +   +P  L  L                                       
Sbjct: 466 THLDLSHNRLR-ALPPALAALRC------------------------------------- 487

Query: 755 TLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTG-PIPSKIGGLTLLNSLDLSK 813
               ++ +  S N L   +  V +L  L  L L  N L        +     L  L+L  
Sbjct: 488 ----LEVLQASDNALE-NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542

Query: 814 N 814
           N
Sbjct: 543 N 543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 42/226 (18%), Positives = 89/226 (39%), Gaps = 32/226 (14%)

Query: 245 LAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQ 304
               +L    V+++V     N  +S+  +  +++ ++            +++ L L+ N+
Sbjct: 26  TIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLNGNK 79

Query: 305 LVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDI 364
           L  + K   NL  L  L+ D N + DL       L +  +  L+ L L  N +   +  +
Sbjct: 80  LTDI-KPLANLKNLGWLFLDENKVKDLSS-----LKDLKK--LKSLSLEHNGIS-DINGL 130

Query: 365 TLFSSLKELHLYDNM------------LDVLYLNNNRFTGTLTKSIGQLSQLELLDVASN 412
                L+ L+L +N             LD L L +N+ +  +   +  L++L+ L ++ N
Sbjct: 131 VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKN 188

Query: 413 SLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRL 458
            +  +     L+ L  L  L+L     +    +        N ++ 
Sbjct: 189 HISDL---RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 231

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.2 bits (167), Expect = 1e-12
 Identities = 50/283 (17%), Positives = 101/283 (35%), Gaps = 41/283 (14%)

Query: 160 LGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTE 219
                     +L              ++L+ ++ +  N  ++      +Q +  LP++T+
Sbjct: 20  DDAFAETIKDNLKKK---SVTDAVTQNELNSIDQIIANNSDIKS----VQGIQYLPNVTK 72

Query: 220 LQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNK 279
           L L G  L      + +    + ++L  L L  N V +            L  L L  N 
Sbjct: 73  LFLNGNKL------TDIKPLANLKNLGWLFLDENKVKDLSS---LKDLKKLKSLSLEHNG 123

Query: 280 LQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKL 339
           +      +   +   L  L L NN++  +      L +L  L  + N ++D++P     L
Sbjct: 124 ISDI---NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-----L 174

Query: 340 SNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIG 399
           +  ++  L+ L L+ N +     D+   + LK L        VL L +        K I 
Sbjct: 175 AGLTK--LQNLYLSKNHIS----DLRALAGLKNLD-------VLELFSQECL---NKPIN 218

Query: 400 QLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILN 442
             S L + +   N+   ++T   +S+       ++  +     
Sbjct: 219 HQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 46/244 (18%), Positives = 85/244 (34%), Gaps = 30/244 (12%)

Query: 138 SLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLN 197
           +       +L     T  V      L S+  +  + +     K ++ +  L  +  + LN
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD---IKSVQGIQYLPNVTKLFLN 76

Query: 198 QVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSN 257
              L +    ++ ++ L +L  L L    +        +S     + L  L L  N +S+
Sbjct: 77  GNKLTD----IKPLANLKNLGWLFLDENKV------KDLSSLKDLKKLKSLSLEHNGISD 126

Query: 258 SVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCR 317
                       L  L L +NK+      +     T L  L L +NQ+  +      L +
Sbjct: 127 ING---LVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIV-PLAGLTK 179

Query: 318 LRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRG-SLPDITLFSSLKELHLY 376
           L+ LY   N+++DL       L N     L++L+L S       +   +       +   
Sbjct: 180 LQNLYLSKNHISDLRA--LAGLKN-----LDVLELFSQECLNKPINHQSNLVVPNTVKNT 232

Query: 377 DNML 380
           D  L
Sbjct: 233 DGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.1 bits (146), Expect = 7e-10
 Identities = 48/225 (21%), Positives = 82/225 (36%), Gaps = 27/225 (12%)

Query: 109 SSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQY 168
            +   L  ++ +    +D   K +   I  L N+  L L+    T   P  L NL +L +
Sbjct: 40  VTQNELNSIDQIIANNSDI--KSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGW 94

Query: 169 LDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLP 228
           L L  N     K L  L  L  L+ + L    + +    +  +  LP L  L L    + 
Sbjct: 95  LFLDEN---KVKDLSSLKDLKKLKSLSLEHNGISD----INGLVHLPQLESLYLGNNKI- 146

Query: 229 SVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPD-S 287
                + ++  +    L  L L  N +S+          + L  L LS N     I D  
Sbjct: 147 -----TDITVLSRLTKLDTLSLEDNQISD---IVPLAGLTKLQNLYLSKNH----ISDLR 194

Query: 288 AFPNPTSLSYLDLSNNQLVSVPKSFR-NLCRLRALYQDSNNLTDL 331
           A     +L  L+L + + ++ P + + NL     +     +L   
Sbjct: 195 ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.8 bits (122), Expect = 7e-07
 Identities = 42/225 (18%), Positives = 83/225 (36%), Gaps = 33/225 (14%)

Query: 592 KNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651
             + +    NL     +  +  +   +  +  +   N+  I  +   ++    +T L L 
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQNELNS--IDQIIANNSD-IKSV-QGIQYLPNVTKLFLN 76

Query: 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQC 711
            NK++ I P     +L +L  L L  N       ++   L++++ L L  N I  +    
Sbjct: 77  GNKLTDIKPL---ANLKNLGWLFLDENKVKDLSSLK--DLKKLKSLSLEHNGI--SDING 129

Query: 712 LNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYG 771
           L +L  + +    N  I                    D    + L  + ++ L  N++  
Sbjct: 130 LVHLPQLESLYLGNNKI-------------------TDITVLSRLTKLDTLSLEDNQIS- 169

Query: 772 EIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
           +I  +  L  L +L LSKN ++      + GL  L+ L+L     
Sbjct: 170 DIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQEC 212

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 34/180 (18%), Positives = 64/180 (35%), Gaps = 29/180 (16%)

Query: 637 SSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQV 696
            S  +F +    +L    ++  +     + L  +  +   +++      +Q  +L  +  
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSVQGIQ--YLPNVTK 72

Query: 697 LDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTL 756
           L L+ N ++   P  L NL  +         +                   KD      L
Sbjct: 73  LFLNGNKLTDIKP--LANLKNLGWLFLDENKV-------------------KDLSSLKDL 111

Query: 757 GLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
             +KS+ L  N +  +I  +  L  L SL L  N +T      +  LT L++L L  N +
Sbjct: 112 KKLKSLSLEHNGI-SDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQI 168

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 39/247 (15%), Positives = 78/247 (31%), Gaps = 35/247 (14%)

Query: 571 EHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNS 630
                 +L    ++  +         +  +   N+     +   + +   +  L L  N 
Sbjct: 24  AETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNK 79

Query: 631 FIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCH 690
            + ++   + +   L  L L  NK+  +        L  L  LSL  N       +   H
Sbjct: 80  -LTDI-KPLANLKNLGWLFLDENKVKDLSSL---KDLKKLKSLSLEHNGISDINGLV--H 132

Query: 691 LQRIQVLDLSQNNISGTVPQCLNNLTAMTA-NKSSNAMIRYPLRTDYYNDHALLVWKRKD 749
           L +++ L L  N I  T    L+ LT +   +   N +                     D
Sbjct: 133 LPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQI--------------------SD 170

Query: 750 SEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSL 809
                 L  ++++ LS N +  ++  +  L  L  L L          +    L + N++
Sbjct: 171 IVPLAGLTKLQNLYLSKNHI-SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 229

Query: 810 DLSKNML 816
             +   L
Sbjct: 230 KNTDGSL 236

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.3 bits (165), Expect = 6e-13
 Identities = 24/170 (14%), Positives = 60/170 (35%), Gaps = 22/170 (12%)

Query: 268 SSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNN 327
           +SL Y+ L++  +          N   +  L ++N    +       L  L  L     +
Sbjct: 44  NSLTYITLANINVTDLTGIEYAHN---IKDLTINNIHATNY-NPISGLSNLERLRIMGKD 99

Query: 328 LTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNN 387
           +T         L++     L +L ++ +    S   +T  ++L ++       + + L+ 
Sbjct: 100 VTSDKIPNLSGLTS-----LTLLDISHSAHDDS--ILTKINTLPKV-------NSIDLSY 145

Query: 388 NRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHN 437
           N     +   +  L +L+ L++  + +        + +  +L  L     
Sbjct: 146 NGAITDI-MPLKTLPELKSLNIQFDGVHDY---RGIEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 24/157 (15%)

Query: 284 IPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCS 343
           IPDS F       YL+    Q  +   +   +  L  +   + N+TDL       +    
Sbjct: 17  IPDSTFKA-----YLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG-----IEYAH 66

Query: 344 RDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQ 403
              ++ L +N+        +    S L  L         L +     T     ++  L+ 
Sbjct: 67  N--IKDLTINNIHAT----NYNPISGLSNLE-------RLRIMGKDVTSDKIPNLSGLTS 113

Query: 404 LELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLI 440
           L LLD++ ++    I    ++ L ++  +DLS+N  I
Sbjct: 114 LTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNGAI 149

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.9 bits (151), Expect = 4e-11
 Identities = 31/194 (15%), Positives = 68/194 (35%), Gaps = 18/194 (9%)

Query: 138 SLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLN 197
           + K   +  L  +            + SL Y+ L+         L  +     ++ + +N
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANIN---VTDLTGIEYAHNIKDLTIN 74

Query: 198 QVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSN 257
            ++          +S L +L  L++ G ++ S    +    ++    L  LD+S +   +
Sbjct: 75  NIHATN----YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTS----LTLLDISHSAHDD 126

Query: 258 SVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCR 317
           S+     N+   +  +DLS N     I          L  L++  + +    +   +  +
Sbjct: 127 SIL-TKINTLPKVNSIDLSYNGAITDI--MPLKTLPELKSLNIQFDGVHDY-RGIEDFPK 182

Query: 318 LRALYQDSNNLTDL 331
           L  LY  S  +   
Sbjct: 183 LNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.5 bits (150), Expect = 6e-11
 Identities = 28/147 (19%), Positives = 59/147 (40%), Gaps = 19/147 (12%)

Query: 293 TSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQL 352
            SL+Y+ L+N  +  +         ++ L  ++ + T+  P     LSN     LE L++
Sbjct: 44  NSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSN-----LERLRI 95

Query: 353 NSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASN 412
               +  +   I   S L  L        +L ++++    ++   I  L ++  +D++ N
Sbjct: 96  MGKDV--TSDKIPNLSGLTSLT-------LLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

Query: 413 SLKGMITEAHLSNLSRLTYLDLSHNSL 439
                I    L  L  L  L++  + +
Sbjct: 147 GAITDIMP--LKTLPELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 30/192 (15%), Positives = 59/192 (30%), Gaps = 48/192 (25%)

Query: 623 SLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHG 682
            + L N + + +L + ++    +  L + +   +   P      L +L  L +   +   
Sbjct: 48  YITLANIN-VTDL-TGIEYAHNIKDLTINNIHATNYNPI---SGLSNLERLRIMGKDVTS 102

Query: 683 RVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHAL 742
                +  L  + +LD+S +    ++   +N L  +                        
Sbjct: 103 DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN----------------------- 139

Query: 743 LVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGG 802
                             SIDLS N    +I  + +L  L SLN+  + +       I  
Sbjct: 140 ------------------SIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG--IED 179

Query: 803 LTLLNSLDLSKN 814
              LN L     
Sbjct: 180 FPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 29/170 (17%), Positives = 65/170 (38%), Gaps = 16/170 (9%)

Query: 136 IGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVR 195
              + ++ ++ L+N   T      +    +++ L ++      +     +S LS LE +R
Sbjct: 40  EAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNI---HATNYNPISGLSNLERLR 94

Query: 196 LNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDV 255
           +   ++   +D +  +S L SLT L +           S ++  N+   +  +DLS N  
Sbjct: 95  IMGKDVT--SDKIPNLSGLTSLTLLDISHSA----HDDSILTKINTLPKVNSIDLSYNGA 148

Query: 256 SNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQL 305
              +      +   L  L++  + +        FP    L+ L   +  +
Sbjct: 149 ITDIMP--LKTLPELKSLNIQFDGVHDYRGIEDFPK---LNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 29/182 (15%), Positives = 63/182 (34%), Gaps = 28/182 (15%)

Query: 212 SQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLV 271
           +Q+ SLT + L   N+      + ++    + ++  L ++    +N       +  S+L 
Sbjct: 41  AQMNSLTYITLANINV------TDLTGIEYAHNIKDLTINNIHATNYNP---ISGLSNLE 91

Query: 272 YLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQL-VSVPKSFRNLCRLRALYQDSNNLTD 330
            L +    +            TSL+ LD+S++    S+      L ++ ++    N    
Sbjct: 92  RLRIMGKDVTSDKI-PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 331 LLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRF 390
            +  L   L       L+ L +  + +     D        +L       + LY  +   
Sbjct: 151 DIMPLK-TLPE-----LKSLNIQFDGVH----DYRGIEDFPKL-------NQLYAFSQTI 193

Query: 391 TG 392
            G
Sbjct: 194 GG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 11/124 (8%)

Query: 109 SSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQY 168
           + + GL +L  L +   D    +IP  +  L ++  LD+S++     +  ++  L  +  
Sbjct: 82  NPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140

Query: 169 LDLSFNFDMLSKKLEWLSQLSFLEYVRL--NQVNLGEATDWLQVVSQLPSLTELQLRGCN 226
           +DLS+N       +  L  L  L+ + +  + V      D  + +   P L +L      
Sbjct: 141 IDLSYN--GAITDIMPLKTLPELKSLNIQFDGV-----HD-YRGIEDFPKLNQLYAFSQT 192

Query: 227 LPSV 230
           +   
Sbjct: 193 IGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 19/134 (14%), Positives = 53/134 (39%), Gaps = 8/134 (5%)

Query: 574 RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIG 633
           + L +++   +      S     L  L +     +     ++     +  L + +++   
Sbjct: 69  KDLTINNIHAT-NYNPISGL-SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 634 ELPSSVKSFTQLTVLDLGHN-KISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQ 692
            + + + +  ++  +DL +N  I+ I+P     +LP+L  L+++ +  H    ++     
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIMPL---KTLPELKSLNIQFDGVHDYRGIE--DFP 181

Query: 693 RIQVLDLSQNNISG 706
           ++  L      I G
Sbjct: 182 KLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 28/178 (15%), Positives = 60/178 (33%), Gaps = 50/178 (28%)

Query: 640 KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDL 699
            +F       LG +  + I  A     +  L  ++L + N      ++  +   I+ L +
Sbjct: 20  STFKAYLNGLLGQSSTANITEA----QMNSLTYITLANINVTDLTGIE--YAHNIKDLTI 73

Query: 700 SQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLV 759
           +  + +   P  ++ L+ +                                         
Sbjct: 74  NNIHATNYNP--ISGLSNLE---------------------------------------- 91

Query: 760 KSIDLSSNRLYGE-IPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
             + +    +  + IP ++ L  L  L++S ++    I +KI  L  +NS+DLS N  
Sbjct: 92  -RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 66.9 bits (164), Expect = 7e-13
 Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 15/124 (12%)

Query: 272 YLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVP-KSFRNLCRLRALYQDSNNLTD 330
            L L+ N+L     D  F     L  L+L  NQL  +   +F     ++ L    N + +
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92

Query: 331 LLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLF---SSLKELHLYDNMLD----VL 383
           +   +FL L       L+ L L  N +   +   + F   +SL  L+L  N  +    + 
Sbjct: 93  ISNKMFLGLHQ-----LKTLNLYDNQIS-CVMPGS-FEHLNSLTSLNLASNPFNCNCHLA 145

Query: 384 YLNN 387
           +   
Sbjct: 146 WFAE 149

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 7/109 (6%)

Query: 248 LDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVS 307
           L L+ N++       LF     LV L+L  N+L G I  +AF   + +  L L  N++  
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKIKE 92

Query: 308 VPK-SFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSN 355
           +    F  L +L+ L    N ++ ++P  F  L++     L  L L SN
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS-----LTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 12/94 (12%)

Query: 292 PTSLSYLDLSNNQLVSVPKS--FRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEI 349
           P   + L L++N+L  +     F  L  L  L    N LT + PN F   S+     ++ 
Sbjct: 28  PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH-----IQE 82

Query: 350 LQLNSNMLRGSLPDITLF---SSLKELHLYDNML 380
           LQL  N ++  + +  +F     LK L+LYDN +
Sbjct: 83  LQLGENKIK-EISN-KMFLGLHQLKTLNLYDNQI 114

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 598 TVLNLANNKFSGKIPDSMDFNCM--MLSLHLRNNSFIGELPSSV-KSFTQLTVLDLGHNK 654
           T L L +N+   +I     F  +  ++ L L+ N  +  +  +  +  + +  L LG NK
Sbjct: 32  TELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENK 89

Query: 655 ISGIIPAWIGDSLPDLVVLSLRSN 678
           I   I   +   L  L  L+L  N
Sbjct: 90  IKE-ISNKMFLGLHQLKTLNLYDN 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 69.0 bits (168), Expect = 1e-12
 Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 7/96 (7%)

Query: 264 FNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRALY 322
              + +L  L + + +    +          L  L +  + L  V   +F    RL  L 
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86

Query: 323 QDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLR 358
              N L  L       LS      L+ L L+ N L 
Sbjct: 87  LSFNALESLSWKTVQGLS------LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 62.4 bits (151), Expect = 2e-10
 Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 7/97 (7%)

Query: 287 SAFPNPTSLSYLDLSNNQLVSV--PKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSR 344
              P   +L+ L + N Q +     +  R L  LR L    + L  + P+ F        
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR--- 81

Query: 345 DTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLD 381
             L  L L+ N L           SL+EL L  N L 
Sbjct: 82  --LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.5 bits (133), Expect = 3e-08
 Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 1/87 (1%)

Query: 243 RSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSN 302
            +L  L +        +          L  L +  + L+  +   AF     LS L+LS 
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSF 89

Query: 303 NQLVSVPKSFRNLCRLRALYQDSNNLT 329
           N L S+         L+ L    N L 
Sbjct: 90  NALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 26/151 (17%), Positives = 48/151 (31%), Gaps = 39/151 (25%)

Query: 292 PTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQ 351
           P   S L  + +  +           L  LY ++                       +  
Sbjct: 7   PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQ--------------------HLQH 46

Query: 352 LNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVAS 411
           L    LRG          L+ L +  + L   ++  + F            +L  L+++ 
Sbjct: 47  LELRDLRG-------LGELRNLTIVKSGLR--FVAPDAFHF--------TPRLSRLNLSF 89

Query: 412 NSLKGMITEAHLSNLSRLTYLDLSHNSLILN 442
           N+L+  ++   +  LS L  L LS N L  +
Sbjct: 90  NALE-SLSWKTVQGLS-LQELVLSGNPLHCS 118

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.0 bits (103), Expect = 1e-04
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 2/93 (2%)

Query: 634 ELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV-CHLQ 692
           +    +     LT L + + +    +       L +L  L++  +     V         
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 693 RIQVLDLSQNNISGTVPQCLNNLTAMTANKSSN 725
           R+  L+LS N +     + +  L+      S N
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%)

Query: 273 LDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRALYQDSNNLTDL 331
           L L  N+    +      N   L+ +DLSNN++ ++   SF N+ +L  L    N L  +
Sbjct: 36  LYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 332 LPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLF---SSLKELHLYDNMLD----VLY 384
            P  F  L +     L +L L+ N +   +P+   F   S+L  L +  N L     + +
Sbjct: 94  PPRTFDGLKS-----LRLLSLHGNDIS-VVPEGA-FNDLSALSHLAIGANPLYCDCNMQW 146

Query: 385 LNN 387
           L++
Sbjct: 147 LSD 149

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 10/92 (10%)

Query: 292 PTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQ 351
           P  ++ L L  NQ   VPK   N   L  +   +N ++ L    F  ++      L  L 
Sbjct: 30  PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ-----LLTLI 84

Query: 352 LNSNMLRGSLPDITLF---SSLKELHLYDNML 380
           L+ N LR  +P    F    SL+ L L+ N +
Sbjct: 85  LSYNRLR-CIPP-RTFDGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 3/85 (3%)

Query: 243 RSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSN 302
           + L  +DLS N +S ++    F++ + L+ L LS N+L+  IP   F    SL  L L  
Sbjct: 54  KHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKSLRLLSLHG 111

Query: 303 NQLVSVPK-SFRNLCRLRALYQDSN 326
           N +  VP+ +F +L  L  L   +N
Sbjct: 112 NDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 6/99 (6%)

Query: 623 SLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHG 682
            L+L  N F   +P  + ++  LT++DL +N+IS  +      ++  L+ L L  N    
Sbjct: 35  ELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR- 91

Query: 683 RVPVQVCH-LQRIQVLDLSQNNISGTVPQ-CLNNLTAMT 719
            +P +    L+ +++L L  N+IS  VP+   N+L+A++
Sbjct: 92  CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALS 129

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 38/174 (21%), Positives = 56/174 (32%), Gaps = 60/174 (34%)

Query: 132 IPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFL 191
           +P  I    ++  L L    FT  VP +L N   L  +DLS N            ++S L
Sbjct: 25  LPKGIPR--DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNN------------RISTL 69

Query: 192 EYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLS 251
                            Q  S +  L  L L                 N  R +      
Sbjct: 70  S---------------NQSFSNMTQLLTLILSY---------------NRLRCIPPR--- 96

Query: 252 LNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQL 305
                       F+   SL  L L  N +   +P+ AF + ++LS+L +  N L
Sbjct: 97  -----------TFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANPL 138

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 44/315 (13%), Positives = 94/315 (29%), Gaps = 54/315 (17%)

Query: 117 LNYLNMKYNDFGGKQIPAFIGSLK---NIRHLDLSNAGFT-------GRVPYQLGNLTSL 166
           +   ++K +    +   +    L    +++ + LS                  + +   L
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN---IASKKDL 62

Query: 167 QYLDLSFNF------------DMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQL 214
           +  + S  F             +L + L    +L  +  +  N          +  +S+ 
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV-RLSDNAFGPTAQEPLIDFLSKH 121

Query: 215 PSLTELQLRGCNL---------PSVIASSSVSFSNSSRSLAHLDLSLNDVSN-SVYYW-- 262
             L  L L    L          ++   +    + ++  L  +    N + N S+  W  
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181

Query: 263 LFNSSSSLVYLDLSSNKLQ----GPIPDSAFPNPTSLSYLDLSNNQL-----VSVPKSFR 313
            F S   L  + +  N ++      +          L  LDL +N        ++  + +
Sbjct: 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241

Query: 314 NLCRLRALYQDSNNLTDL-LPNLFLKLSNCSRDTLEILQLNSNMLRG----SLPDI--TL 366
           +   LR L  +   L+      +    S      L+ L+L  N +      +L  +    
Sbjct: 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 301

Query: 367 FSSLKELHLYDNMLD 381
              L  L L  N   
Sbjct: 302 MPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 51/317 (16%), Positives = 95/317 (29%), Gaps = 64/317 (20%)

Query: 185 LSQLSFLE-YVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSR 243
           +++ S     ++L+ +   +      V+ +  S+ E+ L G  + +  A        S +
Sbjct: 1   MARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60

Query: 244 SLAHLDLSLNDVSNSVYYWLFNSSS---------SLVYLDLSSNKL--QGPIP-DSAFPN 291
            L   + S                           L  + LS N        P       
Sbjct: 61  DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120

Query: 292 PTSLSYLDLSNNQL--------------VSVPKSFRNLCRLRALYQDSNNLTDL-LPNLF 336
            T L +L L NN L              ++V K  +N   LR++    N L +  +    
Sbjct: 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180

Query: 337 LKLSNCSRDTLEILQLNSNMLR--GSLPDITLF----SSLKELHLYDNM----------- 379
               +     L  +++  N +R  G    +         LK L L DN            
Sbjct: 181 KTFQSHR--LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238

Query: 380 -------LDVLYLNNNRFTGTLTKSIGQL------SQLELLDVASNSLKG----MITEAH 422
                  L  L LN+   +     ++           L+ L +  N ++      +    
Sbjct: 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298

Query: 423 LSNLSRLTYLDLSHNSL 439
              +  L +L+L+ N  
Sbjct: 299 DEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 36/230 (15%), Positives = 75/230 (32%), Gaps = 31/230 (13%)

Query: 107 ISSSLIGLQHLNYLNMKYNDF---GGKQIPAFIGSLKNIRHLDLSNAGFT---------- 153
           +  +L+    L+ + +  N F     + +  F+     + HL L N G            
Sbjct: 86  LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA 145

Query: 154 ---GRVPYQLGNLTSLQYLDLSFNF--DMLSKKL-EWLSQLSFLEYVRLNQVNLGE--AT 205
                V  +  N   L+ +    N   +   K+  +       L  V++ Q  +      
Sbjct: 146 LQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE 205

Query: 206 DWL-QVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWL- 263
             L + ++    L  L L+      + +S+      S  +L  L L+   +S      + 
Sbjct: 206 HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265

Query: 264 ----FNSSSSLVYLDLSSNKLQGP----IPDSAFPNPTSLSYLDLSNNQL 305
                  +  L  L L  N+++      +          L +L+L+ N+ 
Sbjct: 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 50/361 (13%), Positives = 97/361 (26%), Gaps = 99/361 (27%)

Query: 369 SLKELHLYDNMLD------------------VLYLNNNRFTGTLTKSIGQL----SQLEL 406
           S++   L  + +                    + L+ N       + + +       LE+
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 407 LDVASNSLKGMITEAH---------LSNLSRLTYLDLSHNSLILNFGSGWVPSFELN--- 454
            + +      +  E           L    +L  + LS N+         +     +   
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 455 -IIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFT 513
             + L     GPQ    +            A  + +   N     +P L  +    N   
Sbjct: 125 EHLYLHNNGLGPQAGAKI------------ARALQELAVNKKAKNAPPLRSIICGRNRLE 172

Query: 514 --GMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFS--GSLSFLCQI- 568
              M  + ++            ++            + ++ + +N     G    L +  
Sbjct: 173 NGSMK-EWAKT---------FQSHR----------LLHTVKMVQNGIRPEGIEHLLLEGL 212

Query: 569 -SDEHFRYLDLSDNLLSGE----LPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLS 623
              +  + LDL DN  +      L    K+W  L  L L +   S             + 
Sbjct: 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS-------ARGAAAVV 265

Query: 624 LHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISG----IIPAWIGDSLPDLVVLSLRSNN 679
                                L  L L +N+I       +   I + +PDL+ L L  N 
Sbjct: 266 DAFSKL-----------ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314

Query: 680 F 680
           F
Sbjct: 315 F 315

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 43/199 (21%), Positives = 80/199 (40%), Gaps = 31/199 (15%)

Query: 244 SLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNN 303
           +    +L    V++ V        S +   +  ++ +Q     +     T+L  L LS+N
Sbjct: 20  NAVKQNLGKQSVTDLVS---QKELSGVQNFNGDNSNIQSL---AGMQFFTNLKELHLSHN 73

Query: 304 QLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPD 363
           Q+  +    ++L +L  L  + N L +L        +      L  L L++N LR    D
Sbjct: 74  QISDL-SPLKDLTKLEELSVNRNRLKNL--------NGIPSACLSRLFLDNNELR----D 120

Query: 364 ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHL 423
                 LK L        +L + NN+        +G LS+LE+LD+  N +        L
Sbjct: 121 TDSLIHLKNLE-------ILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT---GGL 168

Query: 424 SNLSRLTYLDLSHNSLILN 442
           + L ++ ++DL+    +  
Sbjct: 169 TRLKKVNWIDLTGQKCVNE 187

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 28/172 (16%)

Query: 268 SSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNN 327
           ++ V  +L    +   +          +   +  N+ + S+    +    L+ L+   N 
Sbjct: 19  ANAVKQNLGKQSVTDLVSQKELSG---VQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQ 74

Query: 328 LTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNN 387
           ++DL P     L + ++  LE L +N N L+    ++    S          L  L+L+N
Sbjct: 75  ISDLSP-----LKDLTK--LEELSVNRNRLK----NLNGIPSAC--------LSRLFLDN 115

Query: 388 NRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
           N    T   S+  L  LE+L + +N LK +     L  LS+L  LDL  N +
Sbjct: 116 NELRDT--DSLIHLKNLEILSIRNNKLKSI---VMLGFLSKLEVLDLHGNEI 162

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 34/207 (16%), Positives = 68/207 (32%), Gaps = 29/207 (14%)

Query: 136 IGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVR 195
              L N    +L     T  V      L+ +Q  +   +     + L  +   + L+ + 
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNS---NIQSLAGMQFFTNLKELH 69

Query: 196 LNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLN-- 253
           L+   + +    L  +  L  L EL +    L       +++   S+  L+ L L  N  
Sbjct: 70  LSHNQISD----LSPLKDLTKLEELSVNRNRL------KNLNGIPSA-CLSRLFLDNNEL 118

Query: 254 -DVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSF 312
            D  +           +L  L + +NKL+           + L  LDL  N++ +     
Sbjct: 119 RDTDS------LIHLKNLEILSIRNNKLKSI---VMLGFLSKLEVLDLHGNEITNT-GGL 168

Query: 313 RNLCRLRALYQDSNNLTDLLPNLFLKL 339
             L ++  +        +       +L
Sbjct: 169 TRLKKVNWIDLTGQKCVNEPVKYQPEL 195

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 37/220 (16%), Positives = 71/220 (32%), Gaps = 30/220 (13%)

Query: 160 LGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTE 219
              L +    +L          L    +LS ++    +  N+      L  +    +L E
Sbjct: 15  DPGLANAVKQNLGKQSV---TDLVSQKELSGVQNFNGDNSNIQS----LAGMQFFTNLKE 67

Query: 220 LQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNK 279
           L L    +      S +S       L  L ++ N + N         S+ L  L L +N+
Sbjct: 68  LHLSHNQI------SDLSPLKDLTKLEELSVNRNRLKN----LNGIPSACLSRLFLDNNE 117

Query: 280 LQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKL 339
           L+      +  +  +L  L + NN+L S+      L +L  L    N +T+        L
Sbjct: 118 LRDT---DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNTGG-----L 168

Query: 340 SNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNM 379
           +   +  +  + L           +     L   +   + 
Sbjct: 169 TRLKK--VNWIDLTGQKC--VNEPVKYQPELYITNTVKDP 204

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 30/165 (18%), Positives = 57/165 (34%), Gaps = 28/165 (16%)

Query: 275 LSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPN 334
                +    PD    N       +L    +  +  S + L  ++    D++N+  L   
Sbjct: 4   QRPTPINQVFPDPGLAN---AVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSLAG- 58

Query: 335 LFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTL 394
               +   +   L+ L L+ N +     D++    L +L         L +N NR     
Sbjct: 59  ----MQFFTN--LKELHLSHNQIS----DLSPLKDLTKLE-------ELSVNRNRLK--- 98

Query: 395 TKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
             +    + L  L + +N L+       L +L  L  L + +N L
Sbjct: 99  NLNGIPSACLSRLFLDNNELRDT---DSLIHLKNLEILSIRNNKL 140

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 30/143 (20%), Positives = 54/143 (37%), Gaps = 12/143 (8%)

Query: 574 RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIG 633
           + L LS N +S +L     +  KL  L++  N+           +  +  L L NN  + 
Sbjct: 66  KELHLSHNQIS-DLSPLK-DLTKLEELSVNRNRLKNLNGIP---SACLSRLFLDNNE-LR 119

Query: 634 ELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQR 693
           +   S+     L +L + +NK+  I+       L  L VL L  N       +    L++
Sbjct: 120 DT-DSLIHLKNLEILSIRNNKLKSIVML---GFLSKLEVLDLHGNEITNTGGLT--RLKK 173

Query: 694 IQVLDLSQNNISGTVPQCLNNLT 716
           +  +DL+         +    L 
Sbjct: 174 VNWIDLTGQKCVNEPVKYQPELY 196

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 38/201 (18%), Positives = 73/201 (36%), Gaps = 27/201 (13%)

Query: 109 SSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQY 168
            S   L  +   N   ++   + +   +    N++ L LS+   +   P  L +LT L+ 
Sbjct: 35  VSQKELSGVQNFNGDNSNI--QSLAG-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEE 89

Query: 169 LDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLG--EATDWLQVVSQLPSLTELQLRGCN 226
           L ++ N          L  L+ +    L+++ L   E  D    +  L +L  L +R   
Sbjct: 90  LSVNRNR---------LKNLNGIPSACLSRLFLDNNELRD-TDSLIHLKNLEILSIRNNK 139

Query: 227 LPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPD 286
           L       S+        L  LDL  N+++N            + ++DL+  K     P 
Sbjct: 140 L------KSIVMLGFLSKLEVLDLHGNEITN---TGGLTRLKKVNWIDLTGQKCVNE-PV 189

Query: 287 SAFPNPTSLSYLDLSNNQLVS 307
              P     + +   + + +S
Sbjct: 190 KYQPELYITNTVKDPDGRWIS 210

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 33/181 (18%), Positives = 62/181 (34%), Gaps = 32/181 (17%)

Query: 637 SSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQV 696
                       +LG   ++ ++       L  +   +  ++N      +Q      ++ 
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQ---KELSGVQNFNGDNSNIQSLAGMQ--FFTNLKE 67

Query: 697 LDLSQNNISGTVPQCLNNLTAMTA-NKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNT 755
           L LS N IS   P  L +LT +   + + N                    + K+     +
Sbjct: 68  LHLSHNQISDLSP--LKDLTKLEELSVNRN--------------------RLKNLNGIPS 105

Query: 756 LGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNM 815
             L   + L +N L  +   +  L  L  L++  N L   +   +G L+ L  LDL  N 
Sbjct: 106 ACL-SRLFLDNNELR-DTDSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNE 161

Query: 816 L 816
           +
Sbjct: 162 I 162

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 39/223 (17%), Positives = 64/223 (28%), Gaps = 56/223 (25%)

Query: 592 KNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG 651
                    NL     +  +           +    N   +    + ++ FT L  L L 
Sbjct: 16  PGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSL----AGMQFFTNLKELHLS 71

Query: 652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQC 711
           HN+IS + P      L  L  LS+  N       +    L R   L L  N +  T    
Sbjct: 72  HNQISDLSPL---KDLTKLEELSVNRNRLKNLNGIPSACLSR---LFLDNNELRDTDS-- 123

Query: 712 LNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYG 771
           L +L  +                                           + + +N+L  
Sbjct: 124 LIHLKNLE-----------------------------------------ILSIRNNKL-K 141

Query: 772 EIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKN 814
            I  +  L  L  L+L  N +T      +  L  +N +DL+  
Sbjct: 142 SIVMLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQ 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 37/239 (15%), Positives = 74/239 (30%), Gaps = 56/239 (23%)

Query: 571 EHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNS 630
            +    +L    ++  +    K    +   N  N+     +   M F   +  LHL +N 
Sbjct: 19  ANAVKQNLGKQSVTDLVSQ--KELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHLSHNQ 74

Query: 631 FIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCH 690
            I +L S +K  T+L  L +  N++  +           L  L L +N       +   H
Sbjct: 75  -ISDL-SPLKDLTKLEELSVNRNRLKNLNG----IPSACLSRLFLDNNELRDTDSLI--H 126

Query: 691 LQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDS 750
           L+ +++L +  N +   V   L  L+ +                                
Sbjct: 127 LKNLEILSIRNNKLKSIVM--LGFLSKLE------------------------------- 153

Query: 751 EYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSL 809
                      +DL  N +      +T L  +  ++L+              L + N++
Sbjct: 154 ----------VLDLHGNEIT-NTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 66.7 bits (163), Expect = 8e-12
 Identities = 65/362 (17%), Positives = 119/362 (32%), Gaps = 52/362 (14%)

Query: 122 MKYN---DFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLG-----NLTSLQYLDLSF 173
           M Y      G   +  F      +  LDLS          +L         S+  L+LS 
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60

Query: 174 NF------DMLSKKLEWLSQLSFLEYVRLNQVNLGEAT-----DWLQVVSQLPSLTELQL 222
           N       D L + L   +  + +  + L+   L   +       L  +    ++T L L
Sbjct: 61  NSLGFKNSDELVQILA--AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPF--TITVLDL 116

Query: 223 RGCNLPSVIASS-SVSFSNSSRSLAHLDLSLNDVSN----SVYYWLFNSSSSLVYLDLSS 277
              +  S  +S    +FSN   S+  L+L  ND+       +   L    +++  L+L  
Sbjct: 117 GWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176

Query: 278 NKLQGP----IPDSAFPNPTSLSYLDLSNNQL-----VSVPKSFR-NLCRLRALYQDSNN 327
           N L       +       P S++ LDLS N L       +   F      + +L    N 
Sbjct: 177 NNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236

Query: 328 LTDL-LPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLN 386
           L    L NL L   +     L+ + L+ ++++    +     +L         + ++  N
Sbjct: 237 LHGPSLENLKLLKDSLK--HLQTVYLDYDIVKNMSKE--QCKALGAAFPNIQKIILVDKN 292

Query: 387 NNRFTGTLTKSIGQLSQ-----LELLDVASNSL----KGMITEAHLSNLSRLTYLDLSHN 437
                 + +  I  L +      ++  + +  L    K       L+    L     +  
Sbjct: 293 GKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCK 352

Query: 438 SL 439
            L
Sbjct: 353 PL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 48/283 (16%), Positives = 86/283 (30%), Gaps = 56/283 (19%)

Query: 116 HLNYLNMKYNDFGGKQIPAFIGSLKN----IRHLDLSNAGFTGRVPYQLGNL-----TSL 166
            +  L++ +NDF  K    F  +  N    I  L+L       +   +L  +      ++
Sbjct: 110 TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV 169

Query: 167 QYLDLSFNF------DMLSKKLEWLSQLSFLEYVRLNQVNLGE--ATDWLQVVSQLP-SL 217
             L+L  N         L+K L   S  + +  + L+   LG     +   + S +P  +
Sbjct: 170 NSLNLRGNNLASKNCAELAKFLA--SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227

Query: 218 TELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSS 277
             L L    L      +     +S + L  + L  + V N        S      L    
Sbjct: 228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNM-------SKEQCKAL---- 276

Query: 278 NKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFL 337
                    +AFPN   +  +D +  ++   P     +     + + S            
Sbjct: 277 --------GAAFPNIQKIILVDKNGKEI--HPSHSIPIS--NLIRELSGKADV------P 318

Query: 338 KLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNML 380
            L N      +  Q N   L        +   L+E       L
Sbjct: 319 SLLNQCLIFAQKHQTNIEDLN-------IPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 50/321 (15%), Positives = 98/321 (30%), Gaps = 73/321 (22%)

Query: 385 LNNNRFTGTLTKSIGQL----SQLELLDVASNSL--KGM--ITEAHLSNLSRLTYLDLSH 436
           +N        +  + +       +  LD++ N+L       + +A  +  + +T L+LS 
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60

Query: 437 NSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQN-KFSELDVSAAEISDT----V 491
           NS                 +      +     + L       + L++S   +S      +
Sbjct: 61  NS-----------------LGFKNSDE---LVQILAAIPANVTSLNLSGNFLSYKSSDEL 100

Query: 492 PNWFWDLSPNLYYLNLSHNHFT--------GMLPDLSQKFTAYPPEIDLSANSFEGP--- 540
                 +   +  L+L  N F+            +L    T     ++L  N        
Sbjct: 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT----SLNLRGNDLGIKSSD 156

Query: 541 -----IPPIPLTVTSLILFKNMFS----GSLSFLCQISDEHFRYLDLSDNLLSGE----- 586
                +  IP  V SL L  N  +      L+            LDLS NLL  +     
Sbjct: 157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAEL 216

Query: 587 LPNCSKNWQKLTVLNLANNKFSGK----IPDSMDFNCMMLSLHLRNNSF-------IGEL 635
               S     +  LNL  N   G     +    D    + +++L  +            L
Sbjct: 217 AYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL 276

Query: 636 PSSVKSFTQLTVLDLGHNKIS 656
            ++  +  ++ ++D    +I 
Sbjct: 277 GAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 58/272 (21%), Positives = 87/272 (31%), Gaps = 53/272 (19%)

Query: 499 SPNLYYLNLSHNHFT--------GMLPDLSQKFTAYPPEIDLSANSFEGP--------IP 542
              +  L+LS N+              +     T     ++LS NS            + 
Sbjct: 21  PHGVTSLDLSLNNLYSISTVELIQAFANTPASVT----SLNLSGNSLGFKNSDELVQILA 76

Query: 543 PIPLTVTSLILFKNMFS-GSLSFLCQI---SDEHFRYLDLSDNLLSGE--------LPNC 590
            IP  VTSL L  N  S  S   L +           LDL  N  S +          N 
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 591 SKNWQKLTVLNLANNKFSGK----IPDSM-DFNCMMLSLHLRNNSF----IGELPSSVKS 641
             +   +T LNL  N    K    +   +      + SL+LR N+       EL   + S
Sbjct: 137 PAS---ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLAS 193

Query: 642 F-TQLTVLDLGHNKISGIIPAWIGDSLPD----LVVLSLRSNNFHGRVPVQVC----HLQ 692
               +T LDL  N +     A +          +V L+L  N  HG     +      L+
Sbjct: 194 IPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK 253

Query: 693 RIQVLDLSQNNISGTVPQCLNNLTAMTANKSS 724
            +Q + L  + +     +    L A   N   
Sbjct: 254 HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK 285

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 9/111 (8%)

Query: 272 YLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTD 330
            L L  N++   +    F +  +L  L L +NQL ++P   F +L +L  L   +N LT 
Sbjct: 44  ILYLHDNQITK-LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 331 LLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPD-ITLFSSLKELHLYDNML 380
           L   +F +L +     L+ L +  N L   LP  I   + L  L L  N L
Sbjct: 103 LPSAVFDRLVH-----LKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 45/147 (30%), Positives = 65/147 (44%), Gaps = 17/147 (11%)

Query: 292 PTSLSYLDLSNNQLVSVP-KSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEIL 350
           PT+   L L +NQ+  +    F +L  L+ LY  SN L  L   +F  L+      L +L
Sbjct: 39  PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ-----LTVL 93

Query: 351 QLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVA 410
            L +N L   LP   +F  L         L  L++  N+ T  L + I +L+ L  L + 
Sbjct: 94  DLGTNQLT-VLPS-AVFDRLVH-------LKELFMCCNKLT-ELPRGIERLTHLTHLALD 143

Query: 411 SNSLKGMITEAHLSNLSRLTYLDLSHN 437
            N LK +   A    LS LT+  L  N
Sbjct: 144 QNQLKSIPHGA-FDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 56.6 bits (137), Expect = 5e-09
 Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 7/111 (6%)

Query: 245 LAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQ 304
           L  L L  N +  ++   +F+S + L  LDL +N+L   +P + F     L  L +  N+
Sbjct: 66  LKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNK 123

Query: 305 LVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSN 355
           L  +P+    L  L  L  D N L  +    F +LS+     L    L  N
Sbjct: 124 LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS-----LTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 28/147 (19%)

Query: 574 RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIG 633
           + L L DN ++   P    +   L  L L +N+                           
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG------------------------- 77

Query: 634 ELPSSV-KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQ 692
            LP  V  S TQLTVLDLG N+++  +P+ + D L  L  L +  N     +P  +  L 
Sbjct: 78  ALPVGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLT 135

Query: 693 RIQVLDLSQNNISGTVPQCLNNLTAMT 719
            +  L L QN +        + L+++T
Sbjct: 136 HLTHLALDQNQLKSIPHGAFDRLSSLT 162

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 61.9 bits (151), Expect = 3e-11
 Identities = 44/124 (35%), Positives = 64/124 (51%), Gaps = 15/124 (12%)

Query: 272 YLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTD 330
            L+L SNKLQ  +P   F   T L+ L LS NQ+ S+P   F  L +L  LY   N L  
Sbjct: 32  RLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 331 LLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITL--FSSLKELHLYDNMLD-----VL 383
           L   +F KL+      L+ L L++N L+ S+PD      +SL+++ L+ N  D     + 
Sbjct: 91  LPNGVFDKLTQ-----LKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 144

Query: 384 YLNN 387
           YL+ 
Sbjct: 145 YLSR 148

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 7/93 (7%)

Query: 264 FNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALY 322
           F+  + L  L LS N++Q  +PD  F   T L+ L L  N+L S+P   F  L +L+ L 
Sbjct: 48  FDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106

Query: 323 QDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSN 355
            D+N L  +   +F +L++     L+ + L++N
Sbjct: 107 LDTNQLKSVPDGIFDRLTS-----LQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 51.9 bits (125), Expect = 8e-08
 Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 245 LAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQ 304
           L  L LS N +  S+   +F+  + L  L L  NKLQ  +P+  F   T L  L L  NQ
Sbjct: 54  LTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQS-LPNGVFDKLTQLKELALDTNQ 111

Query: 305 LVSVPK-SFRNLCRLRALYQDSN 326
           L SVP   F  L  L+ ++  +N
Sbjct: 112 LKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 11/93 (11%)

Query: 292 PTSLSYLDLSNNQLVSVP-KSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEIL 350
           P+S + L+L +N+L S+P   F  L +L  L    N +  L   +F KL+      L IL
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK-----LTIL 81

Query: 351 QLNSNMLRGSLPDITLF---SSLKELHLYDNML 380
            L+ N L+ SLP+  +F   + LKEL L  N L
Sbjct: 82  YLHENKLQ-SLPN-GVFDKLTQLKELALDTNQL 112

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 62.4 bits (152), Expect = 4e-11
 Identities = 45/113 (39%), Positives = 61/113 (53%), Gaps = 12/113 (10%)

Query: 272 YLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTD 330
           YLDL +N L+  +P+  F   TSL+ L L  N+L S+P   F  L  L  L   +N L  
Sbjct: 32  YLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 331 LLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLF---SSLKELHLYDNML 380
           L   +F KL+      L+ L LN+N L+ SLPD  +F   + LK+L LY N L
Sbjct: 91  LPNGVFDKLTQ-----LKELALNTNQLQ-SLPD-GVFDKLTQLKDLRLYQNQL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 47/147 (31%), Positives = 67/147 (45%), Gaps = 16/147 (10%)

Query: 292 PTSLSYLDLSNNQLVSVP-KSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEIL 350
           P   +YLDL  N L S+P   F  L  L  LY   N L  L   +F KL++     L  L
Sbjct: 27  PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS-----LTYL 81

Query: 351 QLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVA 410
            L++N L+ SLP+  +F  L +       L  L LN N+          +L+QL+ L + 
Sbjct: 82  NLSTNQLQ-SLPN-GVFDKLTQ-------LKELALNTNQLQSLPDGVFDKLTQLKDLRLY 132

Query: 411 SNSLKGMITEAHLSNLSRLTYLDLSHN 437
            N LK  + +     L+ L Y+ L  N
Sbjct: 133 QNQLKS-VPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 42/118 (35%), Positives = 59/118 (50%), Gaps = 7/118 (5%)

Query: 210 VVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSS 269
           V  +L SLT+L L G  L S+         N   SL +L+LS N +  S+   +F+  + 
Sbjct: 47  VFDELTSLTQLYLGGNKLQSL----PNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQ 101

Query: 270 LVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRALYQDSN 326
           L  L L++N+LQ  +PD  F   T L  L L  NQL SVP   F  L  L+ ++   N
Sbjct: 102 LKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 31/106 (29%), Positives = 40/106 (37%), Gaps = 3/106 (2%)

Query: 574 RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIG 633
            YLDL  N L             LT L L  NK         +    +  L+L  N  + 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQ 89

Query: 634 ELPSSV-KSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSN 678
            LP+ V    TQL  L L  N++   +P  + D L  L  L L  N
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQN 134

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.7 bits (154), Expect = 2e-10
 Identities = 80/548 (14%), Positives = 154/548 (28%), Gaps = 182/548 (33%)

Query: 241 SSRSLAHLDLSLNDVSNSVYY--WLFNSSSSLVYLDLSSNKLQGPIPDSAF--------- 289
           S   + H+ +   D  +      W   S    +        L+    +  F         
Sbjct: 47  SKEEIDHI-IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR---INYKFLMSPIKTEQ 102

Query: 290 --PNPTSLSYLDLSNNQLVSVPKSF--RNLCR------LR-ALYQDSNN----------- 327
             P+  +  Y++   ++L +  + F   N+ R      LR AL +               
Sbjct: 103 RQPSMMTRMYIE-QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161

Query: 328 --------------LTDLLPN-LF-LKLSNCSRDT--LEILQ-----LNSNMLRGSLPDI 364
                         +   +   +F L L NC+     LE+LQ     ++ N    S    
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221

Query: 365 TLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSL--------KG 416
            +   +  +      L    L +  +   L         L LL+V +           K 
Sbjct: 222 NIKLRIHSIQAELRRL----LKSKPYENCL---------LVLLNVQNAKAWNAFNLSCKI 268

Query: 417 MITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNK 476
           ++T         L+    +H SL  +      P    ++             K+L    +
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLD-HHSMTLTPDEVKSL-----------LLKYLDC--R 314

Query: 477 FSELDVSAAEIS--------DTVPNWF--WDLSPNLYYLNLSHNHFTGML--------PD 518
             +L       +        +++ +    WD      + +++ +  T ++        P 
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWD-----NWKHVNCDKLTTIIESSLNVLEPA 369

Query: 519 LSQK----FTAYPPEIDLSANSFEGPIPPIPLTV--------TSLILFKNMFSGSL---- 562
             +K     + +PP            IP I L++          +++   +   SL    
Sbjct: 370 EYRKMFDRLSVFPPSA---------HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420

Query: 563 --SFLCQISDEHFRYLDLSDNLLSG--------ELPNCSKNWQKLTVLNLANNKFSGKIP 612
                  I   +       +N  +          +P    +                 IP
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD--------------DLIP 466

Query: 613 DSMD---FNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG--HNKISGIIPAW--IGD 665
             +D   ++   +  HL+N     E P  +  F  +  LD      KI     AW   G 
Sbjct: 467 PYLDQYFYS--HIGHHLKN----IEHPERMTLFRMV-FLDFRFLEQKIRHDSTAWNASGS 519

Query: 666 SLPDLVVL 673
            L  L  L
Sbjct: 520 ILNTLQQL 527

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 32/225 (14%), Positives = 64/225 (28%), Gaps = 68/225 (30%)

Query: 66  WGN------EDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNIS--SSLIGLQHL 117
           W +              K+  V    +   +++ ++     + L    +   S++     
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD---- 451

Query: 118 NYLNMKYNDFGGKQIPA-------FIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLD 170
           +Y   K  D      P         IG      HL   N         +   L  + +LD
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIG-----HHL--KNIE-----HPERMTLFRMVFLD 499

Query: 171 LSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQL------RG 224
             F    L +K+                    ++T W    S L +L +L+         
Sbjct: 500 FRF----LEQKIR------------------HDSTAWNASGSILNTLQQLKFYKPYICDN 537

Query: 225 CNLPSVIASSSVSF-----SNSSRSLAHLDL---SLNDVSNSVYY 261
                 + ++ + F      N   S  + DL   +L     +++ 
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICS-KYTDLLRIALMAEDEAIFE 581

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 60.3 bits (146), Expect = 8e-10
 Identities = 43/285 (15%), Positives = 92/285 (32%), Gaps = 53/285 (18%)

Query: 89  HVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLS 148
            ++   + FR          +       + ++++  +      +   +     +++L L 
Sbjct: 67  LLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126

Query: 149 NAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWL 208
               +  +   L   ++L  L+LS             S+ +                   
Sbjct: 127 GLRLSDPIVNTLAKNSNLVRLNLSG--------CSGFSEFAL-----------------Q 161

Query: 209 QVVSQLPSLTELQLRGCNLPSVIASSSVS--FSNSSRSLAHLDLS--LNDVSNSVYYWLF 264
            ++S    L EL L  C          V    ++ S ++  L+LS    ++  S    L 
Sbjct: 162 TLLSSCSRLDELNLSWCFD---FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 218

Query: 265 NSSSSLVYLDLSSNKLQGPIPDSAFP---NPTSLSYLDLSNNQLVSVPKSFRNLCRLRAL 321
               +LV+LDLS + +   + +  F        L +L LS    +  P++   L  +  L
Sbjct: 219 RRCPNLVHLDLSDSVM---LKNDCFQEFFQLNYLQHLSLSRCYDII-PETLLELGEIPTL 274

Query: 322 YQDSNNLTDLLPNLFLKLSNCSRDT-LEILQLNSNMLRGSLPDIT 365
                          L++     D  L++L+     L+ +    T
Sbjct: 275 -------------KTLQVFGIVPDGTLQLLKEALPHLQINCSHFT 306

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 44/231 (19%), Positives = 83/231 (35%), Gaps = 21/231 (9%)

Query: 214 LPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYL 273
              L    +     P       ++   S   + H+DLS + +  S  + + +  S L  L
Sbjct: 64  TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123

Query: 274 DLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVS---VPKSFRNLCRLRALY-QDSNNLT 329
            L   +L  PI ++   N  +L  L+LS     S   +     +  RL  L      + T
Sbjct: 124 SLEGLRLSDPIVNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 182

Query: 330 DLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNR 389
           +   ++ + +++ S  T+  L L+     G   ++   S L  L      L  L L+++ 
Sbjct: 183 E--KHVQVAVAHVSE-TITQLNLS-----GYRKNLQ-KSDLSTLVRRCPNLVHLDLSDSV 233

Query: 390 F-TGTLTKSIGQLSQLELLDVASNSLKGMITEA---HLSNLSRLTYLDLSH 436
                  +   QL+ L+ L ++       I       L  +  L  L +  
Sbjct: 234 MLKNDCFQEFFQLNYLQHLSLSRCYD---IIPETLLELGEIPTLKTLQVFG 281

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 59.2 bits (143), Expect = 4e-09
 Identities = 50/382 (13%), Positives = 117/382 (30%), Gaps = 39/382 (10%)

Query: 106 NISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTS 165
            ++     L+ LN+   ++     K +     + +++  + + +      V +      +
Sbjct: 186 ELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF-FKAAAN 244

Query: 166 LQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGC 225
           L+        + +    ++++ +   +  RL    +G     + +      + +L L   
Sbjct: 245 LEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI-LFPFAAQIRKLDLLYA 303

Query: 226 NLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIP 285
            L         +      +L  L+   N + +     L      L  L +     +  + 
Sbjct: 304 LL---ETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGME 359

Query: 286 DSAFP-----------NPTSLSYLDLSNNQ-----LVSVPKSFRNLCRLRALY-QDSNNL 328
           D                   L Y+ +  +      L S+    +NLC  R +       +
Sbjct: 360 DEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI 419

Query: 329 TDLLPNLFLK--LSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLN 386
           TDL  +  ++  L  C +  L          +G L D      L  +  Y   +  + L 
Sbjct: 420 TDLPLDNGVRSLLIGCKK--LRRFAFYLR--QGGLTD----LGLSYIGQYSPNVRWMLLG 471

Query: 387 NNRFTGT-LTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGS 445
               +   L +       L+ L++           A ++ L  L YL +      +  G 
Sbjct: 472 YVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT-GQ 530

Query: 446 GWV----PSFELNIIRLGACKQ 463
             +    P + + +I      +
Sbjct: 531 DLMQMARPYWNIELIPSRRVPE 552

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 54.9 bits (132), Expect = 8e-08
 Identities = 53/317 (16%), Positives = 100/317 (31%), Gaps = 37/317 (11%)

Query: 162 NLTSLQYLDLSFNFDMLSKKLEWLSQ--LSFLEYVRLNQVNLGEATDWLQVVSQLPSLTE 219
           NL  L+ +       +    L+ L++     LE ++L++ +       L +V+    +  
Sbjct: 110 NLRQLKSVHFR-RMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKT 168

Query: 220 LQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLND---VSNSVYYWLFNSSSSLVYLDLS 276
           L +   +            +  + SL  L+  + +   +S      +  +  SLV + + 
Sbjct: 169 LLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG 228

Query: 277 S-NKLQGPIPDSAFPNPTSLSYLDLSNN----QLVSVPKSFRNLCRLRALYQDSNNLTDL 331
               L+      A  N        L+ +    +        R LCRL   Y   N +  L
Sbjct: 229 DFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL 288

Query: 332 LPNL----FLKLSNCSRDTLEILQLNSNM-------LRGSLPDITLFS------SLKELH 374
            P       L L     +T +   L            R  + D  L         LK L 
Sbjct: 289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR 348

Query: 375 LYD-NMLDVLYLNNNRFTGTLTKSIGQ-LSQLELLDVA-----SNSLKGMITEAHLSNLS 427
           +        +       +     ++ Q   +LE + V      + SL+ + T  +L NL 
Sbjct: 349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT--YLKNLC 406

Query: 428 RLTYLDLSHNSLILNFG 444
               + L     I +  
Sbjct: 407 DFRLVLLDREERITDLP 423

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 68/542 (12%), Positives = 133/542 (24%), Gaps = 125/542 (23%)

Query: 210 VVSQLPSLTELQLRGC-----------NLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNS 258
           +  + P+L  L+L+G            N    +       SN+ R L  +      VS+ 
Sbjct: 68  LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDL 127

Query: 259 VYYWLFNSS-SSLVYLDLSS-NKLQGPIPDSAFPNPTSLSYLDLSNNQ--------LVSV 308
               L  +    L  L L   +        S   +   +  L +  +         L  +
Sbjct: 128 DLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187

Query: 309 PKSFRNLCRLRALYQDSNNLTDL--------LPNL-FLKLSNCSRDTLEILQLNSNMLRG 359
            +   +L  L     +   ++            +L  +K+ +     L      +  L  
Sbjct: 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLE- 246

Query: 360 SLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMIT 419
                                    LN +        ++    +L  L ++      M  
Sbjct: 247 -------------------EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM-- 285

Query: 420 EAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSE 479
                  +++  LDL +  L                  +  C         L+       
Sbjct: 286 PILFPFAAQIRKLDLLYALLETEDH----------CTLIQKCPN-------LEV------ 322

Query: 480 LDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEG 539
           L+     I D            L  L +                           +    
Sbjct: 323 LETRN-VIGDRGLEVLAQYCKQLKRLRIERGA-----------------------DEQGM 358

Query: 540 PIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGE-LPNCSKNWQKLT 598
                 ++   LI        +L+  CQ       Y+ +  + ++ E L +     + L 
Sbjct: 359 EDEEGLVSQRGLI--------ALAQGCQ----ELEYMAVYVSDITNESLESIGTYLKNLC 406

Query: 599 VLNLANNKFSGKIPD-SMDFNCMMLSLHLRNNSFIGELPSSV-----------KSFTQLT 646
              L       +I D  +D     L +  +                       +    + 
Sbjct: 407 DFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVR 466

Query: 647 VLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVC-HLQRIQVLDLSQNNIS 705
            + LG+   S           P+L  L +R   F  R        L  ++ L +     S
Sbjct: 467 WMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526

Query: 706 GT 707
            T
Sbjct: 527 MT 528

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 32/291 (10%), Positives = 82/291 (28%), Gaps = 23/291 (7%)

Query: 106 NISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTS 165
            +         +  L++ Y     +     I    N+  L+  N      +         
Sbjct: 284 EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343

Query: 166 LQYLDLSF--NFDMLSKKLEWLSQLSF---------LEYVRLNQVNLGEATDWLQVVSQL 214
           L+ L +    +   +  +   +SQ            LEY+ +   ++   +    + + L
Sbjct: 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESL-ESIGTYL 402

Query: 215 PSLTELQLRGCNLPSVIASSSV-----SFSNSSRSLAHLDLSLN--DVSNSVYYWLFNSS 267
            +L + +L   +    I    +     S     + L      L    +++    ++   S
Sbjct: 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS 462

Query: 268 SSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQL--VSVPKSFRNLCRLRALYQDS 325
            ++ ++ L                  +L  L++        ++  +   L  LR L+   
Sbjct: 463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG 522

Query: 326 NNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLY 376
              +    +L           +E++            +I        +  Y
Sbjct: 523 YRASMTGQDLMQMARPYW--NIELIPSRRVPEVNQQGEIREMEHPAHILAY 571

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 52.6 bits (127), Expect = 4e-08
 Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 16/105 (15%)

Query: 292 PTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEIL 350
           PT    L L+NNQ+  +    F +L  L+ LY +SN LT +   +F KL+      L  L
Sbjct: 32  PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ-----LTQL 86

Query: 351 QLNSNMLRGSLPDITLFSSLKEL---HLYDNM-----LDVLYLNN 387
            LN N L+ S+P    F +LK L   +LY+N       D++YL N
Sbjct: 87  DLNDNHLK-SIPR-GAFDNLKSLTHIYLYNNPWDCECRDIMYLRN 129

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 264 FNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRALY 322
           F+   +L  L  +SNKL   IP   F   T L+ LDL++N L S+P+ +F NL  L  +Y
Sbjct: 53  FDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111

Query: 323 QDSN 326
             +N
Sbjct: 112 LYNN 115

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 52.6 bits (127), Expect = 4e-08
 Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 16/105 (15%)

Query: 292 PTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEIL 350
           PT+   L L +NQ+  +    F  L +L  L  D+N LT L   +F KL+      L  L
Sbjct: 29  PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ-----LTQL 83

Query: 351 QLNSNMLRGSLPDITLFSSLKEL---HLYDNM-----LDVLYLNN 387
            LN N L+ S+P    F +LK L    L +N       D+LYL+ 
Sbjct: 84  SLNDNQLK-SIPR-GAFDNLKSLTHIWLLNNPWDCACSDILYLSR 126

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 264 FNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRALY 322
           F+  + L  LDL +N+L   +P   F   T L+ L L++NQL S+P+ +F NL  L  ++
Sbjct: 50  FDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108

Query: 323 QDSN 326
             +N
Sbjct: 109 LLNN 112

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 31/140 (22%), Positives = 50/140 (35%), Gaps = 18/140 (12%)

Query: 298 LDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNML 357
           + L+   +      + N  R R L      +  +  NL   L        + +  + N +
Sbjct: 2   VKLTAELIEQAA-QYTNAVRDRELDLRGYKIPVI-ENLGATLDQ-----FDAIDFSDNEI 54

Query: 358 RGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGM 417
           R     +  F  L+ L         L +NNNR           L  L  L + +NSL  +
Sbjct: 55  R----KLDGFPLLRRLK-------TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103

Query: 418 ITEAHLSNLSRLTYLDLSHN 437
                L++L  LTYL +  N
Sbjct: 104 GDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 11/122 (9%)

Query: 212 SQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLV 271
           +      EL LRG  +P +      +   +      +D S N++        F     L 
Sbjct: 16  TNAVRDRELDLRGYKIPVIE-----NLGATLDQFDAIDFSDNEIRKLDG---FPLLRRLK 67

Query: 272 YLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVP--KSFRNLCRLRALYQDSNNLT 329
            L +++N++   I +        L+ L L+NN LV +       +L  L  L    N +T
Sbjct: 68  TLLVNNNRICR-IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

Query: 330 DL 331
           + 
Sbjct: 127 NK 128

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 7/88 (7%)

Query: 572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMML-SLHLRNNS 630
            F  +D SDN +  +L       ++L  L + NN+   +I + +D     L  L L NN 
Sbjct: 43  QFDAIDFSDNEIR-KLDGFPLL-RRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNN- 98

Query: 631 FIGELP--SSVKSFTQLTVLDLGHNKIS 656
            + EL     + S   LT L +  N ++
Sbjct: 99  SLVELGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 4/82 (4%)

Query: 624 LHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGR 683
           L LR    I  + +   +  Q   +D   N+I  +        L  L  L + +N     
Sbjct: 24  LDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKLDGF---PLLRRLKTLLVNNNRICRI 79

Query: 684 VPVQVCHLQRIQVLDLSQNNIS 705
                  L  +  L L+ N++ 
Sbjct: 80  GEGLDQALPDLTELILTNNSLV 101

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 35/146 (23%), Positives = 53/146 (36%), Gaps = 17/146 (11%)

Query: 266 SSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDS 325
           + +++  L L + K      +       +L +L L N  L+SV  +   L +L+ L    
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSE 80

Query: 326 NNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYL 385
           N +   L  L  KL N     L  L L+ N L+  +  +     L+ L         L L
Sbjct: 81  NRIFGGLDMLAEKLPN-----LTHLNLSGNKLK-DISTLEPLKKLECLK-------SLDL 127

Query: 386 NNNRFT---GTLTKSIGQLSQLELLD 408
            N   T            L QL  LD
Sbjct: 128 FNCEVTNLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 17/126 (13%)

Query: 313 RNLCRLRALYQDSNNLTDL-LPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLK 371
           R    +R L  D+    D  +  L  +  N     LE L L +  L      ++    L 
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVN-----LEFLSLINVGLI----SVSNLPKLP 71

Query: 372 ELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTY 431
           +L         L L+ NR  G L     +L  L  L+++ N LK + T   L  L  L  
Sbjct: 72  KLK-------KLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS 124

Query: 432 LDLSHN 437
           LDL + 
Sbjct: 125 LDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 8e-06
 Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 4/85 (4%)

Query: 621 MLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNF 680
            L L    ++  G++      F  L  L L +  +  +        LP L  L L  N  
Sbjct: 28  ELVLDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLISVSNL---PKLPKLKKLELSENRI 83

Query: 681 HGRVPVQVCHLQRIQVLDLSQNNIS 705
            G + +    L  +  L+LS N + 
Sbjct: 84  FGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 27/131 (20%), Positives = 45/131 (34%), Gaps = 12/131 (9%)

Query: 574 RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIG 633
             LD   +   G++   +  +  L  L+L N      +  ++     +  L L  N   G
Sbjct: 29  LVLDNCKSND-GKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFG 85

Query: 634 ELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSN------NFHGRVPVQ 687
            L    +    LT L+L  NK+  I        L  L  L L +       ++   V   
Sbjct: 86  GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESV--- 142

Query: 688 VCHLQRIQVLD 698
              L ++  LD
Sbjct: 143 FKLLPQLTYLD 153

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 52.2 bits (125), Expect = 5e-07
 Identities = 64/438 (14%), Positives = 122/438 (27%), Gaps = 74/438 (16%)

Query: 110 SLIGLQHLNYLNMKYNDFGGKQIP---AFIGSLKNIRHLDLSNAGFTGRVPYQLG-NLTS 165
            L G  H    N+  + +GG   P   A   S   +  + L     T      +  +  +
Sbjct: 72  ELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKN 131

Query: 166 LQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGC 225
            + L LS                S                    + +   +L EL LR  
Sbjct: 132 FKVLVLS-----------SCEGFS--------------TDGLAAIAATCRNLKELDLRES 166

Query: 226 NLPSVIASSSVSFSNSSRSLAHLDLSL--NDVSNSVYYWLFNSSSSLVYLDLSSNKLQGP 283
           ++  V       F ++  SL  L++S   ++VS S    L     +L  L L+       
Sbjct: 167 DVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK 226

Query: 284 IPDSAFPNPTSLSYLDLS-------NNQLVSVPKSFRNLCRLRALYQDSN-------NLT 329
           +  +       L  L           +    +  +      LR L    +        + 
Sbjct: 227 LA-TLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVY 285

Query: 330 DLLPNL-FLKLSNCSRDTLEILQLNSNM-------LRGSLPDITLFS------SLKELHL 375
            +   L  L LS  +  + ++++L           +   + D  L         L+EL +
Sbjct: 286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRV 345

Query: 376 YDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLS 435
           + +   V+  N       L        +LE +      +          N   +T   L 
Sbjct: 346 FPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405

Query: 436 HNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWF 495
                        P        +  CK                 L +S   ++D V  + 
Sbjct: 406 IIEPKAPDYLTLEPLDIGFGAIVEHCK-------------DLRRLSLSGL-LTDKVFEYI 451

Query: 496 WDLSPNLYYLNLSHNHFT 513
              +  +  L+++    +
Sbjct: 452 GTYAKKMEMLSVAFAGDS 469

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 76/529 (14%), Positives = 155/529 (29%), Gaps = 103/529 (19%)

Query: 210 VVSQLPSLTELQLRGC-----------NLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNS 258
           V+ + P +  ++L+G                 +     + S+S   L  + L    V++ 
Sbjct: 61  VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDD 120

Query: 259 VYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRL 318
               +  S  +   L LSS +                     S + L ++  + RNL  L
Sbjct: 121 CLELIAKSFKNFKVLVLSSCE-------------------GFSTDGLAAIAATCRNLKEL 161

Query: 319 RALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDN 378
                D ++++         LS+       ++ LN + L   +      S+L+ L     
Sbjct: 162 DLRESDVDDVSGHW------LSHFPDTYTSLVSLNISCLASEVSF----SALERLVTRCP 211

Query: 379 MLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNS 438
            L  L LN       L   + +  QLE L     + +         +++     +L   S
Sbjct: 212 NLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS 271

Query: 439 LILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDL 498
              +    ++P+          C +       L        L++S A +           
Sbjct: 272 GFWDAVPAYLPAV------YSVCSR-------LT------TLNLSYATVQSYDLVKLLCQ 312

Query: 499 SPNLYYLNLSHN-------HFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSL 551
            P L  L +                 DL         E+ +  +      P + LT   L
Sbjct: 313 CPKLQRLWVLDYIEDAGLEVLASTCKDLR--------ELRVFPSEPFVMEPNVALTEQGL 364

Query: 552 ILFKNMFSG---SLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFS 608
           +            L F  Q+++     +              ++N   +T   L   +  
Sbjct: 365 VSVSMGCPKLESVLYFCRQMTNAALITI--------------ARNRPNMTRFRLCIIEPK 410

Query: 609 GKIPDSMDF----------NCMML-SLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISG 657
                +++           +C  L  L L                 ++ +L +     S 
Sbjct: 411 APDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSD 470

Query: 658 IIPAWIGDSLPDLVVLSLRSNNFHGR-VPVQVCHLQRIQVLDLSQNNIS 705
           +    +      L  L +R   F  + +      L+ ++ L +S  ++S
Sbjct: 471 LGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 19/140 (13%)

Query: 298 LDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNML 357
           L      +  +  +   L   + L   +NN+  +       LS      L IL L  N++
Sbjct: 30  LHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-----LSGMEN--LRILSLGRNLI 82

Query: 358 RGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGM 417
                       ++ L    + L+ L+++ N+   +L   I +L  L +L +++N +   
Sbjct: 83  ----------KKIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNW 130

Query: 418 ITEAHLSNLSRLTYLDLSHN 437
                L+ L +L  L L+ N
Sbjct: 131 GEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 622 LSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFH 681
           + LH      I ++ +++ +      L L  N I  I        + +L +LSL  N   
Sbjct: 28  VELHGMIPP-IEKMDATLSTLKACKHLALSTNNIEKISSL---SGMENLRILSLGRNLIK 83

Query: 682 GRVPVQVCHLQRIQVLDLSQNNIS 705
            ++         ++ L +S N I+
Sbjct: 84  -KIENLDAVADTLEELWISYNQIA 106

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 14/144 (9%)

Query: 268 SSLVYLDLSSNKLQGPIPD-SAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSN 326
            +  +L LS+N     I   S+     +L  L L  N +  +         L  L+   N
Sbjct: 48  KACKHLALSTNN----IEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN 103

Query: 327 NLTDLLPNLFLKLSNCSRDTLEILQLNSNMLR--GSLPDITLFSSLKELHLYDNMLDVLY 384
            +  L       +       L +L +++N +   G +  +     L++L L  N L   Y
Sbjct: 104 QIASLSG-----IEKLV--NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156

Query: 385 LNNNRFTGTLTKSIGQLSQLELLD 408
             NN  +    + + +L  L+ LD
Sbjct: 157 KENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 15/110 (13%)

Query: 574 RYLDLSDNLLS-----GELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRN 628
           ++L LS N +        + N       L +L+L  N    KI +       +  L +  
Sbjct: 51  KHLALSTNNIEKISSLSGMEN-------LRILSLGRNLIK-KIENLDAVADTLEELWISY 102

Query: 629 NSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSN 678
           N  I  L S ++    L VL + +NKI+         +L  L  L L  N
Sbjct: 103 N-QIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 21/119 (17%)

Query: 321 LYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNML 380
           L+     +  +   L    S       + L L++N        I   SSL  +      L
Sbjct: 30  LHGMIPPIEKMDATL----STLK--ACKHLALSTNN-------IEKISSLSGME----NL 72

Query: 381 DVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
            +L L  N     +         LE L ++ N +  +   + +  L  L  L +S+N +
Sbjct: 73  RILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL---SGIEKLVNLRVLYMSNNKI 127

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 17/126 (13%)

Query: 313 RNLCRLRALYQDSNNLTDL-LPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLK 371
           R    ++ L  D++   +  L  L  +        LE L   +  L      I     L 
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEE-----LEFLSTINVGLT----SIANLPKLN 64

Query: 372 ELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTY 431
           +L         L L++NR +G L     +   L  L+++ N +K + T   L  L  L  
Sbjct: 65  KLK-------KLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117

Query: 432 LDLSHN 437
           LDL + 
Sbjct: 118 LDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 8/86 (9%)

Query: 622 LSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGI--IPAWIGDSLPDLVVLSLRSNN 679
           L L    ++  G+L      F +L  L   +  ++ I  +P      L  L  L L  N 
Sbjct: 22  LVLDNSRSN-EGKLEGLTDEFEELEFLSTINVGLTSIANLP-----KLNKLKKLELSDNR 75

Query: 680 FHGRVPVQVCHLQRIQVLDLSQNNIS 705
             G + V       +  L+LS N I 
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 11/140 (7%)

Query: 138 SLKNIRHLDLSNAGFT-GRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRL 196
           +  +++ L L N+    G++         L++L            +  L +L+ L+ + L
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV---GLTSIANLPKLNKLKKLEL 71

Query: 197 NQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVS 256
           +   +    + L    + P+LT L L G  +  +   S++       +L  LDL   +V+
Sbjct: 72  SDNRVSGGLEVL--AEKCPNLTHLNLSGNKIKDL---STIEPLKKLENLKSLDLFNCEVT 126

Query: 257 NSVYY--WLFNSSSSLVYLD 274
           N   Y   +F     L YLD
Sbjct: 127 NLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 12/131 (9%)

Query: 574 RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIG 633
             LD S +   G+L   +  +++L  L+  N   +  I + +     +  L L +N   G
Sbjct: 22  LVLDNSRSNE-GKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSDNRVSG 78

Query: 634 ELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSN------NFHGRVPVQ 687
            L    +    LT L+L  NKI  +        L +L  L L +       ++   V   
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENV--- 135

Query: 688 VCHLQRIQVLD 698
              L ++  LD
Sbjct: 136 FKLLPQLTYLD 146

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 47/308 (15%), Positives = 99/308 (32%), Gaps = 60/308 (19%)

Query: 163 LTSLQYLDLSFN------FDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPS 216
           L+SL+ L+L+          +++  L   S    L+ V L    L  A     ++     
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAVL--GSGRHALDEVNLASCQLDPA-GLRTLLPVFLR 127

Query: 217 LTELQLRGCNL--PSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFN---SSSSLV 271
             +L L+  +L   +      +   +    +  L LS N ++ +    L      ++S+ 
Sbjct: 128 ARKLGLQLNSLGPEACKDLRDLLLHDQC-QITTLRLSNNPLTAAGVAVLMEGLAGNTSVT 186

Query: 272 YLDLSSNKLQGPIPD-------SAFPNPTSLSYLDLSNNQL-----VSVPKSFRNLCRLR 319
           +L L    L     D       +       L  L+++ N       +++ ++ R    L 
Sbjct: 187 HLSLLHTGLG----DEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLE 242

Query: 320 ALYQDSNNLTD----LLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHL 375
            L+   N L+     +L +L       +R  + + +  +     S+        L E+  
Sbjct: 243 LLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSV-------ILSEVQR 295

Query: 376 YDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGM----ITEAHLSNLSRLTY 431
             N  D   +  +              +L L D+  +    +      +  L     +  
Sbjct: 296 NLNSWDRARVQRH-------------LELLLRDLEDSRGATLNPWRKAQL-LRVEGEVRA 341

Query: 432 LDLSHNSL 439
           L     S 
Sbjct: 342 LLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 45/335 (13%), Positives = 81/335 (24%), Gaps = 94/335 (28%)

Query: 105 GNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLK----NIRHLDLSNAGFTGRVPYQL 160
            N   S   L  L  LN+        +       L      +  ++L++         QL
Sbjct: 62  QNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLAS--------CQL 113

Query: 161 GN---------LTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVV 211
                          + L L  N                         +LG      + +
Sbjct: 114 DPAGLRTLLPVFLRARKLGLQLN-------------------------SLGPEA--CKDL 146

Query: 212 SQL-----PSLTELQLRGCNL--PSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLF 264
             L       +T L+L    L    V         N   S+ HL L    + +     L 
Sbjct: 147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGN--TSVTHLSLLHTGLGDEGLELLA 204

Query: 265 N---SSSSLVYLDLSSNKLQGPIPD-------SAFPNPTSLSYLDLSNNQ--------LV 306
                +  L  L+++ N       D        A     SL  L L  N+        L 
Sbjct: 205 AQLDRNRQLQELNVAYN----GAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260

Query: 307 SVPKSFRNLCRLRALYQDSNNLTD----------LLPNLFLKLSNCSRDTLEILQLNSNM 356
            +  +     R+     +   +++             N + +        L +  L  + 
Sbjct: 261 DLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSR 320

Query: 357 LRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFT 391
              +L        L+     +  +  L        
Sbjct: 321 G-ATLNPWRKAQLLRV----EGEVRALLEQLGSSG 350

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 41.6 bits (98), Expect = 9e-04
 Identities = 36/253 (14%), Positives = 68/253 (26%), Gaps = 41/253 (16%)

Query: 116 HLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLG-----NLTSLQYLD 170
            L+ +N+         +   +      R L L            L      +   +  L 
Sbjct: 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLR 161

Query: 171 LSFNF------DMLSKKLEWLSQLSFLEYVRLNQVNLGE--ATDWLQVVSQLPSLTELQL 222
           LS N        +L + L   + ++ L    L    LG+         + +   L EL +
Sbjct: 162 LSNNPLTAAGVAVLMEGLAGNTSVTHL---SLLHTGLGDEGLELLAAQLDRNRQLQELNV 218

Query: 223 RGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLF-----NSSSSLVYLDLSS 277
                    A +    +    SL  L L  N++S+     L          + V + L+ 
Sbjct: 219 AYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTE 278

Query: 278 NKLQGP---------------IPDSAFPNPTSLSYLDLSNNQL-----VSVPKSFRNLCR 317
                                   +       L   DL +++          +  R    
Sbjct: 279 GTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGE 338

Query: 318 LRALYQDSNNLTD 330
           +RAL +   +   
Sbjct: 339 VRALLEQLGSSGS 351

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.3 bits (111), Expect = 1e-05
 Identities = 26/184 (14%), Positives = 59/184 (32%), Gaps = 17/184 (9%)

Query: 162 NLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQ 221
           +   L + D+ F    +S   +            LN + +    +        P+L  L+
Sbjct: 140 HFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLE 199

Query: 222 LRGCNLPSVIASSSVSFSNSSRSLAHLDLSLND--------VSNSVYYWLFNSSSSLVYL 273
           +    LP  +    +  S+   +L  L L +          ++     +  +   +L +L
Sbjct: 200 IISGGLPDSVVED-ILGSDLP-NLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWL 257

Query: 274 DLSSNKLQGPIPD--SAFPNPTSLSYLDLSNNQL-----VSVPKSFRNLCRLRALYQDSN 326
            +   + Q  + +          L  +D+S   L       +      +  L+ +    N
Sbjct: 258 GIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317

Query: 327 NLTD 330
            L+D
Sbjct: 318 YLSD 321

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.9 bits (110), Expect = 2e-05
 Identities = 31/211 (14%), Positives = 66/211 (31%), Gaps = 40/211 (18%)

Query: 261 YWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRA 320
           +       S +   +  NK +    +  F         ++S  + V +      +  L  
Sbjct: 117 WGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNN 176

Query: 321 LYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNML-RGSLPDIT--LFSSLKELHLYD 377
                     +     L +    R  L+ L++ S  L    + DI      +L++L LY 
Sbjct: 177 --------LKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV 228

Query: 378 N-----------------------MLDVLYLNNNRFTGTLTKSIGQ---LSQLELLDVAS 411
                                    L  L + +      + +   +   L QLE +D+++
Sbjct: 229 GVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288

Query: 412 NSLKGMITEA---HLSNLSRLTYLDLSHNSL 439
             L          H+  +  L ++++ +N L
Sbjct: 289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.6 bits (99), Expect = 4e-04
 Identities = 13/92 (14%), Positives = 32/92 (34%), Gaps = 7/92 (7%)

Query: 590 CSKNWQKLTVLNLANNKFSGKIPDSM---DFNCMMLSLHLRNNSFIGE----LPSSVKSF 642
               +  L  L + + +    + +     D    + ++ +       E    L   V   
Sbjct: 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKI 306

Query: 643 TQLTVLDLGHNKISGIIPAWIGDSLPDLVVLS 674
             L  +++ +N +S  +   +  SLP  + +S
Sbjct: 307 KHLKFINMKYNYLSDEMKKELQKSLPMKIDVS 338

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 43.7 bits (103), Expect = 6e-05
 Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 6/116 (5%)

Query: 141 NIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEY--VRLNQ 198
            I+ +D +++         +  L  ++ + L     +    LE LSQL  L+   + +  
Sbjct: 62  KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121

Query: 199 VNLGEATDW-LQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLN 253
           ++ G  TD  +  +    +L  L L        +            SL  L+L L+
Sbjct: 122 ISCGNVTDKGIIALHHFRNLKYLFLSDL---PGVKEKEKIVQAFKTSLPSLELKLD 174

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	820
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.75
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.6
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.58
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.56
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.53
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.51
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.48
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.45
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.41
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.39
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.36
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.35
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.33
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.33
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.31
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.29
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.28
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.17
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.1
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.02
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.99
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.8
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.78
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.54
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.46
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.39
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.29
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.28
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.28
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.97
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.86
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.93
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.9
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.86
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.16

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.1e-86  Score=792.63  Aligned_cols=674  Identities=28%  Similarity=0.402  Sum_probs=468.2

Q ss_pred             cCCHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCcccCceEecCCCCcEEEEEcCCCCCCCCccc---ccccccCCCC
Q 045139           40 KCIERERQALLMFKQGLIDEYGHLSSWGNEDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGN---ISSSLIGLQH  116 (820)
Q Consensus        40 ~~~~~~~~~l~~~~~~~~~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~l~g~---i~~~l~~l~~  116 (820)
                      .+.++|++||++||+++.||. .+++|.   .+.+||.|.||+|+  +|||++|+|++   .++.|.   +|++++++++
T Consensus         8 ~~~~~~~~all~~k~~~~~~~-~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~---~~l~g~~~~l~~~l~~L~~   78 (768)
T 3rgz_A            8 QSLYREIHQLISFKDVLPDKN-LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSS---KPLNVGFSAVSSSLLSLTG   78 (768)
T ss_dssp             CCHHHHHHHHHHHHTTCSCTT-SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTT---SCCCEEHHHHHHHTTTCTT
T ss_pred             cCCHHHHHHHHHHHhhCCCcc-cccCCC---CCCCCcCCcceEEC--CCcEEEEECCC---CCcCCccCccChhHhccCc
Confidence            356789999999999999988 899997   47899999999998  68999999999   889998   9999999999


Q ss_pred             CCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCc--cCCCCCCCcEEeCCCCccccccchh-hccCCCCCCe
Q 045139          117 LNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPY--QLGNLTSLQYLDLSFNFDMLSKKLE-WLSQLSFLEY  193 (820)
Q Consensus       117 L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~~~~~~~~~-~l~~l~~L~~  193 (820)
                      |+.++++.+.+..  +|+.++++++|++|+|++|.++|.+|.  .++++++|++|++++|. .....+. .+.++++|++
T Consensus        79 L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~  155 (768)
T 3rgz_A           79 LESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEV  155 (768)
T ss_dssp             CCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSE-EECCSSCCSCCCCTTCSE
T ss_pred             ccccCCcCCCcCC--CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCc-cCCcCCHHHhccCCCCCE
Confidence            9999999998743  778999999999999999999999998  99999999999999993 2222222 3367888888


Q ss_pred             eeCCCccCCCCccHHHH---hCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCC
Q 045139          194 VRLNQVNLGEATDWLQV---VSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSL  270 (820)
Q Consensus       194 L~l~~n~l~~~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L  270 (820)
                      |++++|.+.+.  .+..   +.++++|++|++++|.+++..+     +..+ ++|++|++++|.+++.+|. +.... +|
T Consensus       156 L~Ls~n~l~~~--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~l-~~L~~L~Ls~n~l~~~~~~-l~~l~-~L  225 (768)
T 3rgz_A          156 LDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVD-----VSRC-VNLEFLDVSSNNFSTGIPF-LGDCS-AL  225 (768)
T ss_dssp             EECCSSCCEEE--THHHHHHTTCCTTCCEEECCSSEEESCCB-----CTTC-TTCCEEECCSSCCCSCCCB-CTTCC-SC
T ss_pred             EECCCCccCCc--CChhhhhhccCCCCCEEECCCCcccccCC-----cccC-CcCCEEECcCCcCCCCCcc-cccCC-CC
Confidence            88888887763  3333   6778888888888887776654     2344 6777777777777666655 44444 67


Q ss_pred             cEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCC-CcchhhhccCCCcEEEcCCCCCCCcchhhhhhc-ccCCcCCcc
Q 045139          271 VYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLV-SVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKL-SNCSRDTLE  348 (820)
Q Consensus       271 ~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~-~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~~~~~~L~  348 (820)
                      ++|++++|.+++.+|.. ++.+++|++|++++|+++ .+|..  .+++|++|++++|++++.+|..+... +     +|+
T Consensus       226 ~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~-----~L~  297 (768)
T 3rgz_A          226 QHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD-----TLT  297 (768)
T ss_dssp             CEEECCSSCCCSCHHHH-TTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCT-----TCS
T ss_pred             CEEECcCCcCCCcccHH-HhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcC-----cCC
Confidence            77777777776666655 666777777777777666 34432  56667777777776666666655543 4     666


Q ss_pred             EEEcCCCCCcccCCC-CcCcCCCcEEecCCCcccEEEccCCccccccccc-ccCCCCCCEEecCCCcCccccCHHHhhcC
Q 045139          349 ILQLNSNMLRGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKS-IGQLSQLELLDVASNSLKGMITEAHLSNL  426 (820)
Q Consensus       349 ~L~L~~n~l~~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~l~~l  426 (820)
                      +|++++|.+.+.+|. ++.+++|++|+          +++|.++|.+|.. +.++++|++|++++|.+++.+|. .+.++
T Consensus       298 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~----------L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l  366 (768)
T 3rgz_A          298 GLDLSGNHFYGAVPPFFGSCSLLESLA----------LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE-SLTNL  366 (768)
T ss_dssp             EEECCSSEEEECCCGGGGGCTTCCEEE----------CCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT-THHHH
T ss_pred             EEECcCCcCCCccchHHhcCCCccEEE----------CCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH-HHHhh
Confidence            777777766666665 66666666543          3345555555544 66666666777766666665665 45555


Q ss_pred             C-CCCEEeCcCCccccccCCCCcC--ccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcE
Q 045139          427 S-RLTYLDLSHNSLILNFGSGWVP--SFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLY  503 (820)
Q Consensus       427 ~-~L~~L~Ls~n~l~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~  503 (820)
                      + +|++|++++|.+.+..+..+..  ...|+.|++++|.+.+.+|.++..+++|++|++++|.+++.+|..+..+ ++|+
T Consensus       367 ~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~  445 (768)
T 3rgz_A          367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL-SKLR  445 (768)
T ss_dssp             TTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC-TTCC
T ss_pred             hcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcC-CCCC
Confidence            4 6666666666666666655544  4556666666666666666666666666666666666666666665554 4666


Q ss_pred             EEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCcc
Q 045139          504 YLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLL  583 (820)
Q Consensus       504 ~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l  583 (820)
                      +|++++|++++.+|..+..++.+ +.+++++|+++|.+|..+..+.                      +|++|++++|++
T Consensus       446 ~L~L~~n~l~~~~p~~~~~l~~L-~~L~L~~N~l~~~~p~~l~~l~----------------------~L~~L~L~~N~l  502 (768)
T 3rgz_A          446 DLKLWLNMLEGEIPQELMYVKTL-ETLILDFNDLTGEIPSGLSNCT----------------------NLNWISLSNNRL  502 (768)
T ss_dssp             EEECCSSCCCSCCCGGGGGCTTC-CEEECCSSCCCSCCCGGGGGCT----------------------TCCEEECCSSCC
T ss_pred             EEECCCCcccCcCCHHHcCCCCc-eEEEecCCcccCcCCHHHhcCC----------------------CCCEEEccCCcc
Confidence            66666666666666655555555 5666666666655554433332                      566666666666


Q ss_pred             ccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCC----------
Q 045139          584 SGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHN----------  653 (820)
Q Consensus       584 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N----------  653 (820)
                      ++.+|..++.+++|++|++++|++++.+|..++.+++|++|++++|+++|.+|..+..+..+..+++..+          
T Consensus       503 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~  582 (768)
T 3rgz_A          503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG  582 (768)
T ss_dssp             CSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCS
T ss_pred             CCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccc
Confidence            6666666666666666666666666666666666666666666666666666665555444443333221          


Q ss_pred             ------------cCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhcccccccccc
Q 045139          654 ------------KISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTAN  721 (820)
Q Consensus       654 ------------~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~  721 (820)
                                  .+.|..|..+. .++.++.++++.|.+.|.+|..+..+++|+.||+++|+++|.+|.++++++.|   
T Consensus       583 ~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L---  658 (768)
T 3rgz_A          583 MKKECHGAGNLLEFQGIRSEQLN-RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL---  658 (768)
T ss_dssp             CCTTCCSSEEEEECTTCCGGGGG-GGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC---
T ss_pred             ccccccccccccccccccchhhh-ccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccC---
Confidence                        12223333333 34445555666677777777777777888888888888888888777777766   


Q ss_pred             ccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccc
Q 045139          722 KSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKI  800 (820)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l  800 (820)
                                                            +.|||++|+++|.|| .++++++|++||||+|+++|.+|..+
T Consensus       659 --------------------------------------~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l  700 (768)
T 3rgz_A          659 --------------------------------------FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM  700 (768)
T ss_dssp             --------------------------------------CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGG
T ss_pred             --------------------------------------CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHH
Confidence                                                  678888888887888 77788888888888888888888878


Q ss_pred             cCCCCCCeEeCCCCcCcccC
Q 045139          801 GGLTLLNSLDLSKNMLMRAT  820 (820)
Q Consensus       801 ~~l~~L~~LdLs~N~l~g~i  820 (820)
                      +++++|++||+|+|+|+|+|
T Consensus       701 ~~l~~L~~L~ls~N~l~g~i  720 (768)
T 3rgz_A          701 SALTMLTEIDLSNNNLSGPI  720 (768)
T ss_dssp             GGCCCCSEEECCSSEEEEEC
T ss_pred             hCCCCCCEEECcCCcccccC
Confidence            77888888888888887765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.9e-72  Score=670.57  Aligned_cols=651  Identities=25%  Similarity=0.348  Sum_probs=568.5

Q ss_pred             CCCCCCCCCCCCCCCcccCceEecCCC-----C-------------cEEEEEcCCCCCCCCcccccccccCCCCCCEEEC
Q 045139           61 GHLSSWGNEDDKKDCCKWRGVSCSNQT-----G-------------HVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNM  122 (820)
Q Consensus        61 ~~~~~W~~~~~~~~~c~w~gv~c~~~~-----~-------------~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~L  122 (820)
                      ..+|+|.    |+.|- ...|+.-+..     |             +++.++++.   +++. .+|+.++++++|++|||
T Consensus        37 ~~~C~w~----gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~---~~~~-~l~~~~~~l~~L~~L~L  107 (768)
T 3rgz_A           37 KNPCTFD----GVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSN---SHIN-GSVSGFKCSASLTSLDL  107 (768)
T ss_dssp             SCGGGST----TEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTT---SCEE-ECCCCCCCCTTCCEEEC
T ss_pred             CCCcCCc----ceEEC-CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcC---CCcC-CCchhhccCCCCCEEEC
Confidence            3579996    77764 3446543221     1             234444444   3332 24589999999999999


Q ss_pred             cCCCCCCcccCc--cccCCCCCCEEeccCCCCCCCCCccC-CCCCCCcEEeCCCCccccccchhh---ccCCCCCCeeeC
Q 045139          123 KYNDFGGKQIPA--FIGSLKNIRHLDLSNAGFTGRVPYQL-GNLTSLQYLDLSFNFDMLSKKLEW---LSQLSFLEYVRL  196 (820)
Q Consensus       123 s~n~l~~~~~p~--~i~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~~~~~~~~~---l~~l~~L~~L~l  196 (820)
                      ++|.+.+. +|.  .++++++|++|+|++|.+.+.+|..+ +++++|++|++++| .+....+..   +.++++|++|++
T Consensus       108 s~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~L  185 (768)
T 3rgz_A          108 SRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAI  185 (768)
T ss_dssp             CSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHHHTTCCTTCCEEEC
T ss_pred             CCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhhhhhccCCCCCEEEC
Confidence            99999986 888  89999999999999999999999877 89999999999999 333333333   789999999999


Q ss_pred             CCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEEEcc
Q 045139          197 NQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLS  276 (820)
Q Consensus       197 ~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls  276 (820)
                      ++|.+.+...    +.++++|++|++++|.+++.+|   . ++++ ++|++|++++|.+++.+|..+.... +|++|+++
T Consensus       186 s~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~---~-l~~l-~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~Ls  255 (768)
T 3rgz_A          186 SGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIP---F-LGDC-SALQHLDISGNKLSGDFSRAISTCT-ELKLLNIS  255 (768)
T ss_dssp             CSSEEESCCB----CTTCTTCCEEECCSSCCCSCCC---B-CTTC-CSCCEEECCSSCCCSCHHHHTTTCS-SCCEEECC
T ss_pred             CCCcccccCC----cccCCcCCEEECcCCcCCCCCc---c-cccC-CCCCEEECcCCcCCCcccHHHhcCC-CCCEEECC
Confidence            9999987532    3789999999999999999887   3 6777 9999999999999999999988877 99999999


Q ss_pred             CCcccCCCCCCCCCCCCCCCEEECCCCCCC-Ccchhhhcc-CCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCC
Q 045139          277 SNKLQGPIPDSAFPNPTSLSYLDLSNNQLV-SVPKSFRNL-CRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNS  354 (820)
Q Consensus       277 ~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~-~ip~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~  354 (820)
                      +|.+++.+|..   .+++|++|++++|+++ .+|..+... ++|++|++++|++++.+|..|..++     +|++|++++
T Consensus       256 ~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~-----~L~~L~L~~  327 (768)
T 3rgz_A          256 SNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS-----LLESLALSS  327 (768)
T ss_dssp             SSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCT-----TCCEEECCS
T ss_pred             CCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCC-----CccEEECCC
Confidence            99999888863   8999999999999999 889887765 9999999999999999999999998     999999999


Q ss_pred             CCCcccCCC--CcCcCCCcEEecCCCcccEEEccCCcccccccccccCCC-CCCEEecCCCcCccccCHHHhhc--CCCC
Q 045139          355 NMLRGSLPD--ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLS-QLELLDVASNSLKGMITEAHLSN--LSRL  429 (820)
Q Consensus       355 n~l~~~~p~--~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~l~~--l~~L  429 (820)
                      |.+.+.+|.  +..+++|++|          ++++|.+++.+|..+..++ +|++|++++|.+++.+|. .+..  +++|
T Consensus       328 n~l~~~ip~~~l~~l~~L~~L----------~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~-~~~~~~~~~L  396 (768)
T 3rgz_A          328 NNFSGELPMDTLLKMRGLKVL----------DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP-NLCQNPKNTL  396 (768)
T ss_dssp             SEEEEECCHHHHTTCTTCCEE----------ECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT-TTTCSTTCCC
T ss_pred             CcccCcCCHHHHhcCCCCCEE----------eCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcCh-hhhhcccCCc
Confidence            999988886  8888998876          4557777888999999987 999999999999988877 4555  7899


Q ss_pred             CEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcCC
Q 045139          430 TYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSH  509 (820)
Q Consensus       430 ~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~  509 (820)
                      ++|++++|.+++.+|..+..+.+|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+... ++|++|++++
T Consensus       397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~  475 (768)
T 3rgz_A          397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV-KTLETLILDF  475 (768)
T ss_dssp             CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCS
T ss_pred             cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCC-CCceEEEecC
Confidence            999999999999999999999999999999999999999999999999999999999999999988775 7999999999


Q ss_pred             CcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccCc
Q 045139          510 NHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPN  589 (820)
Q Consensus       510 n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~  589 (820)
                      |++++.+|..+..++.+ +.+++++|++++.+|..+..+.                      +|++|++++|+++|.+|.
T Consensus       476 N~l~~~~p~~l~~l~~L-~~L~L~~N~l~~~~p~~~~~l~----------------------~L~~L~L~~N~l~~~~p~  532 (768)
T 3rgz_A          476 NDLTGEIPSGLSNCTNL-NWISLSNNRLTGEIPKWIGRLE----------------------NLAILKLSNNSFSGNIPA  532 (768)
T ss_dssp             SCCCSCCCGGGGGCTTC-CEEECCSSCCCSCCCGGGGGCT----------------------TCCEEECCSSCCEEECCG
T ss_pred             CcccCcCCHHHhcCCCC-CEEEccCCccCCcCChHHhcCC----------------------CCCEEECCCCcccCcCCH
Confidence            99999999988888888 9999999999999887766555                      899999999999999999


Q ss_pred             ccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCC----------------------cccccCCcchhcCCCCCE
Q 045139          590 CSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNN----------------------SFIGELPSSVKSFTQLTV  647 (820)
Q Consensus       590 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N----------------------~l~~~~p~~l~~l~~L~~  647 (820)
                      .+..+++|++|++++|+++|.+|..+.....+..+++..+                      .+.+..+..+..++.++.
T Consensus       533 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  612 (768)
T 3rgz_A          533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP  612 (768)
T ss_dssp             GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCC
T ss_pred             HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccc
Confidence            9999999999999999999999999888776665554431                      245566777888888999


Q ss_pred             EECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcc
Q 045139          648 LDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAM  727 (820)
Q Consensus       648 L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~  727 (820)
                      ++++.|.+.|.+|..+. .+++|++|+|++|+++|.+|..++.+++|+.|+|++|+++|.+|..+++++.|         
T Consensus       613 ~~l~~~~~~g~~~~~~~-~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L---------  682 (768)
T 3rgz_A          613 CNITSRVYGGHTSPTFD-NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL---------  682 (768)
T ss_dssp             SCTTSCEEEEECCCSCS-SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC---------
T ss_pred             cccccceecccCchhhh-ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCC---------
Confidence            99999999999999987 79999999999999999999999999999999999999999999999999888         


Q ss_pred             cccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCC
Q 045139          728 IRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLL  806 (820)
Q Consensus       728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L  806 (820)
                                                      +.||||+|+++|.|| .++.+++|++||+|+|+++|.||+. +.+..+
T Consensus       683 --------------------------------~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~  729 (768)
T 3rgz_A          683 --------------------------------NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETF  729 (768)
T ss_dssp             --------------------------------CEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGS
T ss_pred             --------------------------------CEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccC
Confidence                                            899999999999999 9999999999999999999999975 556666


Q ss_pred             CeEeCCCCc-Ccc
Q 045139          807 NSLDLSKNM-LMR  818 (820)
Q Consensus       807 ~~LdLs~N~-l~g  818 (820)
                      ....+.+|+ +.|
T Consensus       730 ~~~~~~gN~~Lcg  742 (768)
T 3rgz_A          730 PPAKFLNNPGLCG  742 (768)
T ss_dssp             CGGGGCSCTEEES
T ss_pred             CHHHhcCCchhcC
Confidence            777778886 444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=6.6e-58  Score=541.93  Aligned_cols=580  Identities=23%  Similarity=0.266  Sum_probs=398.1

Q ss_pred             cccccccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhc
Q 045139          106 NISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWL  185 (820)
Q Consensus       106 ~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l  185 (820)
                      .+|..+.  +++++|++++|.+++. .+..|+++++|++|+|++|.+++..|..++++++|++|++++|           
T Consensus        18 ~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-----------   83 (680)
T 1ziw_A           18 QVPDDLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-----------   83 (680)
T ss_dssp             SCCSCSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-----------
T ss_pred             ccccccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-----------
Confidence            3555544  6788888888888764 4556788888888888888888777777777777777777766           


Q ss_pred             cCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhc
Q 045139          186 SQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFN  265 (820)
Q Consensus       186 ~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~  265 (820)
                                    .+...  .+..++++++|++|++++|.+++..+   ..+.++ ++|++|++++|.+++..|..+..
T Consensus        84 --------------~l~~l--~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~  143 (680)
T 1ziw_A           84 --------------ELSQL--SDKTFAFCTNLTELHLMSNSIQKIKN---NPFVKQ-KNLITLDLSHNGLSSTKLGTQVQ  143 (680)
T ss_dssp             --------------CCCCC--CTTTTTTCTTCSEEECCSSCCCCCCS---CTTTTC-TTCCEEECCSSCCSCCCCCSSSC
T ss_pred             --------------ccCcc--ChhhhccCCCCCEEECCCCccCccCh---hHcccc-CCCCEEECCCCcccccCchhhcc
Confidence                          33331  11356778888888888888777666   445555 67777777777766655555544


Q ss_pred             cCCCCcEEEccCCcccCCCCCCCCC--CCCCCCEEECCCCCCCCc-chhhhccCCCcEEEcCCCCCCCcchhhhhhcccC
Q 045139          266 SSSSLVYLDLSSNKLQGPIPDSAFP--NPTSLSYLDLSNNQLVSV-PKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNC  342 (820)
Q Consensus       266 ~~~~L~~L~Ls~n~l~g~ip~~~l~--~l~~L~~L~Ls~n~l~~i-p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~  342 (820)
                      +. +|++|++++|.+++..+.. +.  .+++|++|++++|+++.+ |..+..+++|+.++++++.+.+.....+....  
T Consensus       144 l~-~L~~L~L~~n~l~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l--  219 (680)
T 1ziw_A          144 LE-NLQELLLSNNKIQALKSEE-LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL--  219 (680)
T ss_dssp             CT-TCCEEECCSSCCCCBCHHH-HGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH--
T ss_pred             cc-cCCEEEccCCcccccCHHH-hhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh--
Confidence            44 6666666666666433322 22  346666666666666644 33466666666666666665533222221100  


Q ss_pred             CcCCccEEEcCCCCCcccCCC-CcCcCC--CcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccC
Q 045139          343 SRDTLEILQLNSNMLRGSLPD-ITLFSS--LKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMIT  419 (820)
Q Consensus       343 ~~~~L~~L~L~~n~l~~~~p~-~~~l~~--L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  419 (820)
                      ...+|+.|++++|.+.+..|. +..++.  |++|          ++++|.+++..|..++.+++|++|++++|.+++..|
T Consensus       220 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L----------~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  289 (680)
T 1ziw_A          220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML----------DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS  289 (680)
T ss_dssp             TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEE----------ECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECT
T ss_pred             hhccccEEEccCCcccccChhHhhccCcCCCCEE----------ECCCCCcCccCcccccCcccccEeeCCCCccCccCh
Confidence            001566666666666665555 444432  4443          334444444555566666666666666666665444


Q ss_pred             HHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCc----hhhhcCCCccEEecCCCCccCCCCchh
Q 045139          420 EAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFP----KWLQTQNKFSELDVSAAEISDTVPNWF  495 (820)
Q Consensus       420 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~n~i~~~~p~~~  495 (820)
                      . .+.++++|++|++++|...+.++.                   ..+|    ..+..+++|++|++++|.+.+..|..+
T Consensus       290 ~-~~~~l~~L~~L~L~~~~~~~~~~~-------------------~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  349 (680)
T 1ziw_A          290 H-SLHGLFNVRYLNLKRSFTKQSISL-------------------ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF  349 (680)
T ss_dssp             T-TTTTCTTCCEEECTTCBCCC-------------------------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT
T ss_pred             h-hhcCCCCccEEeccchhhhccccc-------------------ccccccChhhcccCCCCCEEECCCCccCCCChhHh
Confidence            3 466666666666665543221110                   0122    256677778888888887777666655


Q ss_pred             hccCCCcEEEEcCCCcCCCCCC--cccccc--cCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccc
Q 045139          496 WDLSPNLYYLNLSHNHFTGMLP--DLSQKF--TAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDE  571 (820)
Q Consensus       496 ~~~~~~L~~L~ls~n~l~~~~p--~~~~~~--~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~  571 (820)
                      ..+ ++|++|++++|.+.....  ..+...  ..+ +.+++++|++++..|..+..+.                      
T Consensus       350 ~~l-~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L-~~L~L~~n~l~~~~~~~~~~l~----------------------  405 (680)
T 1ziw_A          350 TGL-INLKYLSLSNSFTSLRTLTNETFVSLAHSPL-HILNLTKNKISKIESDAFSWLG----------------------  405 (680)
T ss_dssp             TTC-TTCCEEECTTCBSCCCEECTTTTGGGTTSCC-CEEECTTSCCCEECTTTTTTCT----------------------
T ss_pred             ccc-cCCcEEECCCCchhhhhcchhhhcccccCcC-ceEECCCCCCCeEChhhhhCCC----------------------
Confidence            543 678888888776543211  111111  234 6677777777666555554443                      


Q ss_pred             cccEEEccCCccccccC-cccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCccc--ccCCcchhcCCCCCEE
Q 045139          572 HFRYLDLSDNLLSGELP-NCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFI--GELPSSVKSFTQLTVL  648 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L  648 (820)
                      +|++|++++|.+++.+| ..+.++++|++|++++|++.+..+..|..+++|++|++++|.+.  +.+|..+.++++|++|
T Consensus       406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L  485 (680)
T 1ziw_A          406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL  485 (680)
T ss_dssp             TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred             CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence            88999999999987766 68889999999999999999888889999999999999999987  5788899999999999


Q ss_pred             ECCCCcCccccCcchhcCCCCccEEEcCcccccccCC--------cccCCCCCCCEEeCcCCCCccccchhccccccccc
Q 045139          649 DLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVP--------VQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTA  720 (820)
Q Consensus       649 ~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p--------~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  720 (820)
                      ++++|++++..|..+. .+++|++|++++|++++..+        ..+..+++|++|++++|+++...+..|.+++.|  
T Consensus       486 ~Ls~N~l~~i~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L--  562 (680)
T 1ziw_A          486 DLSNNNIANINDDMLE-GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL--  562 (680)
T ss_dssp             ECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--
T ss_pred             ECCCCCCCcCChhhhc-cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCc--
Confidence            9999999966666666 79999999999999986422        237889999999999999984333467887777  


Q ss_pred             cccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCccc
Q 045139          721 NKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSK  799 (820)
Q Consensus       721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~  799 (820)
                                                             +.|||++|++++..+ .+..+++|+.|+|++|++++..|..
T Consensus       563 ---------------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~  603 (680)
T 1ziw_A          563 ---------------------------------------KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV  603 (680)
T ss_dssp             ---------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHH
T ss_pred             ---------------------------------------ceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhH
Confidence                                                   899999999995555 6789999999999999999988888


Q ss_pred             cc-CCCCCCeEeCCCCcCccc
Q 045139          800 IG-GLTLLNSLDLSKNMLMRA  819 (820)
Q Consensus       800 l~-~l~~L~~LdLs~N~l~g~  819 (820)
                      ++ .+++|+.||+++|++.+.
T Consensus       604 ~~~~~~~L~~l~l~~N~~~c~  624 (680)
T 1ziw_A          604 FGPAFRNLTELDMRFNPFDCT  624 (680)
T ss_dssp             HHHHHTTCSEEECTTCCCCBC
T ss_pred             hcccccccCEEEccCCCcccC
Confidence            87 789999999999999874

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.3e-56  Score=531.00  Aligned_cols=572  Identities=22%  Similarity=0.206  Sum_probs=353.4

Q ss_pred             CCcEEEEEcCCCCCCCCcccccccccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCC
Q 045139           87 TGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSL  166 (820)
Q Consensus        87 ~~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  166 (820)
                      ..++++|+|++   +.+++..+..|+++++|++|++++|.+.+. .|..++++++|++|+|++|.+++..+..|+++++|
T Consensus        24 ~~~l~~L~Ls~---n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L   99 (680)
T 1ziw_A           24 PTNITVLNLTH---NQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL   99 (680)
T ss_dssp             CTTCSEEECCS---SCCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCcEEECCC---CCCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence            35799999998   888887778899999999999999999986 78889999999999999999996555579999999


Q ss_pred             cEEeCCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCcc
Q 045139          167 QYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLA  246 (820)
Q Consensus       167 ~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~  246 (820)
                      ++|++++| .+....+                          ..++++++|++|++++|.+++..+   ..+.++ ++|+
T Consensus       100 ~~L~L~~n-~l~~~~~--------------------------~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l-~~L~  148 (680)
T 1ziw_A          100 TELHLMSN-SIQKIKN--------------------------NPFVKQKNLITLDLSHNGLSSTKL---GTQVQL-ENLQ  148 (680)
T ss_dssp             SEEECCSS-CCCCCCS--------------------------CTTTTCTTCCEEECCSSCCSCCCC---CSSSCC-TTCC
T ss_pred             CEEECCCC-ccCccCh--------------------------hHccccCCCCEEECCCCcccccCc---hhhccc-ccCC
Confidence            99999988 2221111                          234555555555555555555544   334444 6666


Q ss_pred             EEECcCCCCCCchhhhhhc-cCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCC-Ccchhh---hccCCCcEE
Q 045139          247 HLDLSLNDVSNSVYYWLFN-SSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLV-SVPKSF---RNLCRLRAL  321 (820)
Q Consensus       247 ~L~Ls~n~l~~~~~~~~~~-~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~-~ip~~l---~~l~~L~~L  321 (820)
                      +|++++|.+++..+..+.. ..++|++|++++|.+++..|.. +..+++|+.|+++++.+. .....+   ...++|++|
T Consensus       149 ~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L  227 (680)
T 1ziw_A          149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL  227 (680)
T ss_dssp             EEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTG-GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEE
T ss_pred             EEEccCCcccccCHHHhhccccccccEEECCCCcccccChhh-hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEE
Confidence            6666666666554444322 1136677777777666433333 666667777777666655 111111   123567777


Q ss_pred             EcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCC-CcCcCCCcEEecCCCcccEEEccCCcccccccccccC
Q 045139          322 YQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQ  400 (820)
Q Consensus       322 ~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~  400 (820)
                      ++++|.+++..|..|..+..   ++|+.|++++|.+.+..|. ++.+++|++|++          ++|.+++..|..+..
T Consensus       228 ~L~~n~l~~~~~~~~~~l~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L----------~~n~l~~~~~~~~~~  294 (680)
T 1ziw_A          228 SLSNSQLSTTSNTTFLGLKW---TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL----------EYNNIQHLFSHSLHG  294 (680)
T ss_dssp             ECTTSCCCEECTTTTGGGGG---SCCCEEECTTSCCCEECTTTTTTCTTCCEEEC----------CSCCBSEECTTTTTT
T ss_pred             EccCCcccccChhHhhccCc---CCCCEEECCCCCcCccCcccccCcccccEeeC----------CCCccCccChhhhcC
Confidence            77777777766666665540   1377777777777666655 666666665543          344555556666777


Q ss_pred             CCCCCEEecCCCcCcccc--------CHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhh
Q 045139          401 LSQLELLDVASNSLKGMI--------TEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQ  472 (820)
Q Consensus       401 l~~L~~L~L~~n~l~~~~--------~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~  472 (820)
                      +++|+.|++++|...+.+        +...+..+++|++|++++|.+.+..+..+..                       
T Consensus       295 l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------------------  351 (680)
T 1ziw_A          295 LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG-----------------------  351 (680)
T ss_dssp             CTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTT-----------------------
T ss_pred             CCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhcc-----------------------
Confidence            777777777765444321        1123555666666666666655433333333                       


Q ss_pred             cCCCccEEecCCCCccCC-CCc-hhhcc-CCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCC-CCCcc
Q 045139          473 TQNKFSELDVSAAEISDT-VPN-WFWDL-SPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPP-IPLTV  548 (820)
Q Consensus       473 ~~~~L~~L~l~~n~i~~~-~p~-~~~~~-~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~-~~~~l  548 (820)
                       +++|++|++++|.+... ++. .+... .++|+.|++++|++++..|..+..++.+ +.+++++|.+++.+|. .+..+
T Consensus       352 -l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~~l  429 (680)
T 1ziw_A          352 -LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL-EVLDLGLNEIGQELTGQEWRGL  429 (680)
T ss_dssp             -CTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTC-CEEECCSSCCEEECCSGGGTTC
T ss_pred             -ccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCC-CEEeCCCCcCccccCcccccCc
Confidence             33333333333332111 010 01100 1245555555555554444444444444 4455555544443332 12221


Q ss_pred             eEEeccCcccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeee--ecCCCCcccccCCcEEec
Q 045139          549 TSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFS--GKIPDSMDFNCMMLSLHL  626 (820)
Q Consensus       549 ~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L  626 (820)
                      .                      +|++|++++|++++..+..+..+++|++|++++|.+.  +.+|..++.+++|++|++
T Consensus       430 ~----------------------~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L  487 (680)
T 1ziw_A          430 E----------------------NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL  487 (680)
T ss_dssp             T----------------------TCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred             c----------------------cccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEEC
Confidence            1                      6677777777777666677777777777777777765  456677777777777777


Q ss_pred             cCCcccccCCcchhcCCCCCEEECCCCcCccccCc--------chhcCCCCccEEEcCcccccccCCcccCCCCCCCEEe
Q 045139          627 RNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPA--------WIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLD  698 (820)
Q Consensus       627 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--------~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  698 (820)
                      ++|++++..+..+.++++|++|++++|++++..+.        .+. .+++|++|+|++|+++...+..|..+++|+.|+
T Consensus       488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~  566 (680)
T 1ziw_A          488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK-GLSHLHILNLESNGFDEIPVEVFKDLFELKIID  566 (680)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhc-CCCCCCEEECCCCCCCCCCHHHcccccCcceeE
Confidence            77777766666677777777777777777643211        133 567777777777777744344567777777777


Q ss_pred             CcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-Ccc
Q 045139          699 LSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVT  777 (820)
Q Consensus       699 Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~  777 (820)
                      +++|++++..+..|.+++.|                                         +.|||++|++++.+| .+.
T Consensus       567 Ls~N~l~~l~~~~~~~l~~L-----------------------------------------~~L~L~~N~l~~~~~~~~~  605 (680)
T 1ziw_A          567 LGLNNLNTLPASVFNNQVSL-----------------------------------------KSLNLQKNLITSVEKKVFG  605 (680)
T ss_dssp             CCSSCCCCCCTTTTTTCTTC-----------------------------------------CEEECTTSCCCBCCHHHHH
T ss_pred             CCCCCCCcCCHhHhCCCCCC-----------------------------------------CEEECCCCcCCccChhHhc
Confidence            77777775444555666655                                         677777777775555 455


Q ss_pred             -cccCCCEEeCCCCccccCC
Q 045139          778 -SLVGLISLNLSKNSLTGPI  796 (820)
Q Consensus       778 -~l~~L~~L~Ls~N~l~~~i  796 (820)
                       .+++|+.|++++|.+...-
T Consensus       606 ~~~~~L~~l~l~~N~~~c~c  625 (680)
T 1ziw_A          606 PAFRNLTELDMRFNPFDCTC  625 (680)
T ss_dssp             HHHTTCSEEECTTCCCCBCC
T ss_pred             ccccccCEEEccCCCcccCC
Confidence             5677777777777776543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.1e-54  Score=501.76  Aligned_cols=526  Identities=20%  Similarity=0.206  Sum_probs=352.5

Q ss_pred             cccccccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhc
Q 045139          106 NISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWL  185 (820)
Q Consensus       106 ~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l  185 (820)
                      .+|..+..  ++++||+++|.+++. .|..|+++++|++|+|++|.+++..|..|+++++|++|++++|           
T Consensus        26 ~iP~~l~~--~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-----------   91 (606)
T 3t6q_A           26 EIPGTLPN--STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-----------   91 (606)
T ss_dssp             SCCTTSCT--TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-----------
T ss_pred             cCcCCCCC--cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-----------
Confidence            45554432  688999999998875 6778889999999999999888777888888888888888777           


Q ss_pred             cCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhc
Q 045139          186 SQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFN  265 (820)
Q Consensus       186 ~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~  265 (820)
                                    .+.+  ..+..++++++|++|++++|.+++..+                            ..+..
T Consensus        92 --------------~l~~--~~~~~~~~l~~L~~L~L~~n~i~~l~~----------------------------~~~~~  127 (606)
T 3t6q_A           92 --------------PLIF--MAETALSGPKALKHLFFIQTGISSIDF----------------------------IPLHN  127 (606)
T ss_dssp             --------------CCSE--ECTTTTSSCTTCCEEECTTSCCSCGGG----------------------------SCCTT
T ss_pred             --------------cccc--cChhhhcccccccEeeccccCcccCCc----------------------------chhcc
Confidence                          2221  123445566666666666666655433                            22223


Q ss_pred             cCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCc-chhhhccCCCc--EEEcCCCCCCCcchhhhhhcccC
Q 045139          266 SSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSV-PKSFRNLCRLR--ALYQDSNNLTDLLPNLFLKLSNC  342 (820)
Q Consensus       266 ~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~i-p~~l~~l~~L~--~L~L~~n~l~~~~~~~~~~l~~~  342 (820)
                      .. +|++|++++|.+++ ++...+..+++|++|++++|+++.+ |..++.+++|+  +|++++|.+++..|..|...   
T Consensus       128 l~-~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~---  202 (606)
T 3t6q_A          128 QK-TLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA---  202 (606)
T ss_dssp             CT-TCCEEECCSSCCCC-CCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTC---
T ss_pred             CC-cccEEECCCCcccc-cCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhc---
Confidence            33 66666666666663 2211144467777777777777755 44567777777  67777777777666665542   


Q ss_pred             CcCCccEEEcCCCCCcccCCC-CcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHH
Q 045139          343 SRDTLEILQLNSNMLRGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEA  421 (820)
Q Consensus       343 ~~~~L~~L~L~~n~l~~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  421 (820)
                         +|+.|++++|...   +. +..+..++...+....+.  ++....+.......+..+ +|+.|++++|.+++..+ .
T Consensus       203 ---~L~~L~l~~~~~~---~~~~~~l~~~~l~~l~~~~~~--~~~~~~i~~~~~~~l~~~-~L~~L~l~~n~l~~~~~-~  272 (606)
T 3t6q_A          203 ---VFQSLNFGGTQNL---LVIFKGLKNSTIQSLWLGTFE--DMDDEDISPAVFEGLCEM-SVESINLQKHYFFNISS-N  272 (606)
T ss_dssp             ---EEEEEECTTCSCH---HHHHHHTTTCEEEEEECCCCT--TSCCCCCCGGGGGGGGGS-EEEEEECTTCCCSSCCT-T
T ss_pred             ---cccccccCCchhH---HHHhhhccccchhheechhhc--cccccccChhHhchhhcC-ceeEEEeecCccCccCH-H
Confidence               4777777776521   11 222333222221111111  011111221222222222 67777777777776433 3


Q ss_pred             HhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCC
Q 045139          422 HLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPN  501 (820)
Q Consensus       422 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~  501 (820)
                      .|+.+++|++|++++|.++                         .+|.++..+++|++|++++|.+.+..|..+..+ ++
T Consensus       273 ~~~~l~~L~~L~l~~n~l~-------------------------~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~  326 (606)
T 3t6q_A          273 TFHCFSGLQELDLTATHLS-------------------------ELPSGLVGLSTLKKLVLSANKFENLCQISASNF-PS  326 (606)
T ss_dssp             TTTTCTTCSEEECTTSCCS-------------------------CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC-TT
T ss_pred             HhccccCCCEEeccCCccC-------------------------CCChhhcccccCCEEECccCCcCcCchhhhhcc-Cc
Confidence            5777777777777777664                         344455556666666666666665555444443 46


Q ss_pred             cEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCC
Q 045139          502 LYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDN  581 (820)
Q Consensus       502 L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n  581 (820)
                      |++|++++|.+.+.+|..                        .+..+.                      +|++|++++|
T Consensus       327 L~~L~l~~n~~~~~~~~~------------------------~~~~l~----------------------~L~~L~l~~n  360 (606)
T 3t6q_A          327 LTHLSIKGNTKRLELGTG------------------------CLENLE----------------------NLRELDLSHD  360 (606)
T ss_dssp             CSEEECCSCSSCCBCCSS------------------------TTTTCT----------------------TCCEEECCSS
T ss_pred             CCEEECCCCCcccccchh------------------------hhhccC----------------------cCCEEECCCC
Confidence            666666666555444331                        011111                      6777777777


Q ss_pred             cccccc--CcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcc-hhcCCCCCEEECCCCcCccc
Q 045139          582 LLSGEL--PNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSS-VKSFTQLTVLDLGHNKISGI  658 (820)
Q Consensus       582 ~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~  658 (820)
                      .+++..  |..+..+++|++|++++|++.+..|..++.+++|++|++++|++.+..|.. +..+++|++|++++|.+++.
T Consensus       361 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~  440 (606)
T 3t6q_A          361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS  440 (606)
T ss_dssp             CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTT
T ss_pred             ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCc
Confidence            777655  667788888888888888888888888888888888888888888776544 78888888888888888877


Q ss_pred             cCcchhcCCCCccEEEcCccccccc---CCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccc
Q 045139          659 IPAWIGDSLPDLVVLSLRSNNFHGR---VPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTD  735 (820)
Q Consensus       659 ~p~~l~~~l~~L~~L~L~~N~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~  735 (820)
                      .|..+. .+++|++|++++|++++.   .+..+..+++|++|++++|++++..|..+.+++.|                 
T Consensus       441 ~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-----------------  502 (606)
T 3t6q_A          441 SEQLFD-GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM-----------------  502 (606)
T ss_dssp             CTTTTT-TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC-----------------
T ss_pred             CHHHHh-CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC-----------------
Confidence            777776 688888888888888762   23567888888888888888888778888877777                 


Q ss_pred             cccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCC
Q 045139          736 YYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKN  814 (820)
Q Consensus       736 ~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N  814 (820)
                                              +.|||++|++++.+| .+..++.| .|++++|++++.+|..++.+++|+.||+++|
T Consensus       503 ------------------------~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  557 (606)
T 3t6q_A          503 ------------------------NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN  557 (606)
T ss_dssp             ------------------------CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTC
T ss_pred             ------------------------CEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCC
Confidence                                    788888888888888 88888888 8888888888888888888888888888888


Q ss_pred             cCccc
Q 045139          815 MLMRA  819 (820)
Q Consensus       815 ~l~g~  819 (820)
                      +++|.
T Consensus       558 ~~~c~  562 (606)
T 3t6q_A          558 PLDCT  562 (606)
T ss_dssp             CEECS
T ss_pred             Ccccc
Confidence            88764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=7.3e-52  Score=483.52  Aligned_cols=503  Identities=21%  Similarity=0.226  Sum_probs=339.8

Q ss_pred             CcEEEEEcCCCCCCCCcccccccccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCc
Q 045139           88 GHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQ  167 (820)
Q Consensus        88 ~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  167 (820)
                      ..++.|+|++   +.+++..|.+|+++++|++|+|++|.+.+. .|..|+++++|++|+|++|.+++..|..++++++|+
T Consensus        33 ~~l~~L~Ls~---n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  108 (606)
T 3t6q_A           33 NSTECLEFSF---NVLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK  108 (606)
T ss_dssp             TTCCEEECTT---CCCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCC
T ss_pred             CcCcEEEccC---CccCcCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhccccccc
Confidence            4789999999   899988889999999999999999999885 789999999999999999999988899999999999


Q ss_pred             EEeCCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccE
Q 045139          168 YLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAH  247 (820)
Q Consensus       168 ~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~  247 (820)
                      +|++++|                         .+.+.  .+..++++++|++|++++|.+++...   ..+..+ ++|++
T Consensus       109 ~L~L~~n-------------------------~i~~l--~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l-~~L~~  157 (606)
T 3t6q_A          109 HLFFIQT-------------------------GISSI--DFIPLHNQKTLESLYLGSNHISSIKL---PKGFPT-EKLKV  157 (606)
T ss_dssp             EEECTTS-------------------------CCSCG--GGSCCTTCTTCCEEECCSSCCCCCCC---CTTCCC-TTCCE
T ss_pred             Eeecccc-------------------------CcccC--CcchhccCCcccEEECCCCcccccCc---ccccCC-cccCE
Confidence            9999988                         22221  12345667777777777777776433   233334 88888


Q ss_pred             EECcCCCCCCchhhhhhccCCCCc--EEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCC
Q 045139          248 LDLSLNDVSNSVYYWLFNSSSSLV--YLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDS  325 (820)
Q Consensus       248 L~Ls~n~l~~~~~~~~~~~~~~L~--~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~  325 (820)
                      |++++|.+++..+..+.... +|+  +|++++|.+++..|.. +. ..+|++|++++|.  .++..+..+.+++...+..
T Consensus       158 L~L~~n~l~~~~~~~~~~l~-~L~~l~L~l~~n~l~~~~~~~-~~-~~~L~~L~l~~~~--~~~~~~~~l~~~~l~~l~~  232 (606)
T 3t6q_A          158 LDFQNNAIHYLSKEDMSSLQ-QATNLSLNLNGNDIAGIEPGA-FD-SAVFQSLNFGGTQ--NLLVIFKGLKNSTIQSLWL  232 (606)
T ss_dssp             EECCSSCCCEECHHHHHTTT-TCCSEEEECTTCCCCEECTTT-TT-TCEEEEEECTTCS--CHHHHHHHTTTCEEEEEEC
T ss_pred             EEcccCcccccChhhhhhhc-ccceeEEecCCCccCccChhH-hh-hccccccccCCch--hHHHHhhhccccchhheec
Confidence            88888888876677666666 888  8899999988544433 44 4688999998886  5566666676665554433


Q ss_pred             CCCC-----CcchhhhhhcccCCcCCccEEEcCCCCCcccCCC-CcCcCCCcEEecCCCcccEEEccCCccccccccccc
Q 045139          326 NNLT-----DLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIG  399 (820)
Q Consensus       326 n~l~-----~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~  399 (820)
                      ..+.     ...+..|..+..   .+|+.|++++|.+.+..+. ++.+++|++|++++|.+          + .+|..+.
T Consensus       233 ~~~~~~~~~~i~~~~~~~l~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l----------~-~lp~~l~  298 (606)
T 3t6q_A          233 GTFEDMDDEDISPAVFEGLCE---MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL----------S-ELPSGLV  298 (606)
T ss_dssp             CCCTTSCCCCCCGGGGGGGGG---SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC----------S-CCCSSCC
T ss_pred             hhhccccccccChhHhchhhc---CceeEEEeecCccCccCHHHhccccCCCEEeccCCcc----------C-CCChhhc
Confidence            3222     223344444431   1588888888888877666 77888888776554443          3 5677788


Q ss_pred             CCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccE
Q 045139          400 QLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSE  479 (820)
Q Consensus       400 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  479 (820)
                      .+++|++|++++|.+++..|. .+..+++|++|++++|.+.+.++..                       .+..+++|++
T Consensus       299 ~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~-----------------------~~~~l~~L~~  354 (606)
T 3t6q_A          299 GLSTLKKLVLSANKFENLCQI-SASNFPSLTHLSIKGNTKRLELGTG-----------------------CLENLENLRE  354 (606)
T ss_dssp             SCTTCCEEECTTCCCSBGGGG-CGGGCTTCSEEECCSCSSCCBCCSS-----------------------TTTTCTTCCE
T ss_pred             ccccCCEEECccCCcCcCchh-hhhccCcCCEEECCCCCcccccchh-----------------------hhhccCcCCE
Confidence            888888888888888875554 6788888888888888776443332                       3455666666


Q ss_pred             EecCCCCccCCC--CchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcc
Q 045139          480 LDVSAAEISDTV--PNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNM  557 (820)
Q Consensus       480 L~l~~n~i~~~~--p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~  557 (820)
                      |++++|.+.+..  |..+..+ ++|++|++++|++.+..|..+..++                                 
T Consensus       355 L~l~~n~l~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~---------------------------------  400 (606)
T 3t6q_A          355 LDLSHDDIETSDCCNLQLRNL-SHLQSLNLSYNEPLSLKTEAFKECP---------------------------------  400 (606)
T ss_dssp             EECCSSCCCEEEESTTTTTTC-TTCCEEECCSCSCEEECTTTTTTCT---------------------------------
T ss_pred             EECCCCccccccCcchhcccC-CCCCEEECCCCcCCcCCHHHhcCCc---------------------------------
Confidence            666666665543  3334332 5666666666666554444332222                                 


Q ss_pred             cccccchhhccccccccEEEccCCccccccCc-ccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCccccc--
Q 045139          558 FSGSLSFLCQISDEHFRYLDLSDNLLSGELPN-CSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGE--  634 (820)
Q Consensus       558 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--  634 (820)
                                    +|++|++++|++++..|. .+..+++|++|++++|++.+..|..++.+++|++|++++|++.+.  
T Consensus       401 --------------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  466 (606)
T 3t6q_A          401 --------------QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI  466 (606)
T ss_dssp             --------------TCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEE
T ss_pred             --------------cCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccc
Confidence                          455555555555544433 255566666666666666655555666666666666666666542  


Q ss_pred             -CCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhcc
Q 045139          635 -LPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLN  713 (820)
Q Consensus       635 -~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  713 (820)
                       .+..+..+++|++|++++|++++..|..+. .+++|++|++++|++++..|..+..++.| .|++++|++++..|..+.
T Consensus       467 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~  544 (606)
T 3t6q_A          467 QKTNSLQTLGRLEILVLSFCDLSSIDQHAFT-SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLP  544 (606)
T ss_dssp             CSSCGGGGCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHH
T ss_pred             ccchhhccCCCccEEECCCCccCccChhhhc-cccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcc
Confidence             224456666666666666666655555555 56666666666666666666666666666 666666666655555555


Q ss_pred             ccccc
Q 045139          714 NLTAM  718 (820)
Q Consensus       714 ~l~~L  718 (820)
                      .++.|
T Consensus       545 ~l~~L  549 (606)
T 3t6q_A          545 ILSQQ  549 (606)
T ss_dssp             HHHTS
T ss_pred             cCCCC
Confidence            55555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.6e-52  Score=489.13  Aligned_cols=530  Identities=20%  Similarity=0.189  Sum_probs=300.2

Q ss_pred             EEcCCCCCCCCcccccccccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCC
Q 045139           93 LNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLS  172 (820)
Q Consensus        93 L~L~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  172 (820)
                      ++.++   .+++ .+|..+.  +++++|++++|.+++. .|..|+++++|++|+|++|.+++..|..|+++++|++|+++
T Consensus        16 ~~c~~---~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls   88 (606)
T 3vq2_A           16 YQCMD---QKLS-KVPDDIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT   88 (606)
T ss_dssp             EECTT---SCCS-SCCTTSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             eEccC---CCcc-cCCCCCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence            44444   4443 4565554  7899999999999875 66689999999999999999998888889999999999999


Q ss_pred             CCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCC-CCccccccccCCcCCccEEECc
Q 045139          173 FNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPS-VIASSSVSFSNSSRSLAHLDLS  251 (820)
Q Consensus       173 ~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~~~~~L~~L~Ls  251 (820)
                      +| .+....+..++++++|++|++++|.+.+..  +..++++++|++|++++|.+.+ .+|   ..++++ ++|++|+++
T Consensus        89 ~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~lp---~~~~~l-~~L~~L~Ls  161 (606)
T 3vq2_A           89 GN-PIQSFSPGSFSGLTSLENLVAVETKLASLE--SFPIGQLITLKKLNVAHNFIHSCKLP---AYFSNL-TNLVHVDLS  161 (606)
T ss_dssp             TC-CCCCCCTTSSTTCTTCCEEECTTSCCCCSS--SSCCTTCTTCCEEECCSSCCCCCCCC---GGGGTC-TTCCEEECC
T ss_pred             CC-cccccChhhcCCcccCCEEEccCCcccccc--ccccCCCCCCCEEeCCCCcccceech---HhHhhc-CCCCEEEcc
Confidence            88 233333455666666666666666665532  1235556666666666665554 234   344444 555555555


Q ss_pred             CCCCCCchhhhhhccCCC----CcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCC--CcchhhhccCCCcEEEcCC
Q 045139          252 LNDVSNSVYYWLFNSSSS----LVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLV--SVPKSFRNLCRLRALYQDS  325 (820)
Q Consensus       252 ~n~l~~~~~~~~~~~~~~----L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~--~ip~~l~~l~~L~~L~L~~  325 (820)
                      +|.+++..+..+.... +    +++|++++|.++ .++...+... +|++|++++|.++  .+|..+.+++.|+.+++..
T Consensus       162 ~n~l~~~~~~~~~~l~-~L~~~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~  238 (606)
T 3vq2_A          162 YNYIQTITVNDLQFLR-ENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL  238 (606)
T ss_dssp             SSCCCEECTTTTHHHH-HCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEE
T ss_pred             CCcceecChhhhhhhh-ccccccceeeccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccc
Confidence            5555544444333322 2    235555555555 3443323332 4555555555554  3344455555555444433


Q ss_pred             CCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEc-cCCcccccccccccCCCCC
Q 045139          326 NNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYL-NNNRFTGTLTKSIGQLSQL  404 (820)
Q Consensus       326 n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L-~~n~l~~~~~~~l~~l~~L  404 (820)
                      +.+.+..             .+          . .++ ...+..+..+     .++.+++ ..+.+.+.+|. +..+++|
T Consensus       239 ~~~~~~~-------------~l----------~-~~~-~~~~~~l~~l-----~l~~l~l~~~~~~~~~~~~-~~~l~~L  287 (606)
T 3vq2_A          239 GEFKDER-------------NL----------E-IFE-PSIMEGLCDV-----TIDEFRLTYTNDFSDDIVK-FHCLANV  287 (606)
T ss_dssp             ECCTTSC-------------CC----------S-CCC-GGGGTTGGGS-----EEEEEEECCCTTCCGGGGS-CGGGTTC
T ss_pred             cccccCC-------------cc----------c-ccC-hHHhhhhhhc-----cHhheeccccccccccccc-cccCCCC
Confidence            2222110             00          0 000 0011111111     1123333 34455555554 5555666


Q ss_pred             CEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCC
Q 045139          405 ELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSA  484 (820)
Q Consensus       405 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  484 (820)
                      +.|++++|.+.. +|  .+..+++|++|++++|.+                                             
T Consensus       288 ~~L~l~~~~~~~-l~--~l~~~~~L~~L~l~~n~l---------------------------------------------  319 (606)
T 3vq2_A          288 SAMSLAGVSIKY-LE--DVPKHFKWQSLSIIRCQL---------------------------------------------  319 (606)
T ss_dssp             SEEEEESCCCCC-CC--CCCTTCCCSEEEEESCCC---------------------------------------------
T ss_pred             CEEEecCccchh-hh--hccccccCCEEEcccccC---------------------------------------------
Confidence            666666665543 33  344555555555555544                                             


Q ss_pred             CCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccch
Q 045139          485 AEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSF  564 (820)
Q Consensus       485 n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~  564 (820)
                          +.+|..   ..++|+.|++++|+..+..+  +..++                                        
T Consensus       320 ----~~lp~~---~l~~L~~L~l~~n~~~~~~~--~~~l~----------------------------------------  350 (606)
T 3vq2_A          320 ----KQFPTL---DLPFLKSLTLTMNKGSISFK--KVALP----------------------------------------  350 (606)
T ss_dssp             ----SSCCCC---CCSSCCEEEEESCSSCEECC--CCCCT----------------------------------------
T ss_pred             ----cccccC---CCCccceeeccCCcCccchh--hccCC----------------------------------------
Confidence                233321   12445555555543222110  00000                                        


Q ss_pred             hhccccccccEEEccCCccccc--cCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCC-cchhc
Q 045139          565 LCQISDEHFRYLDLSDNLLSGE--LPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELP-SSVKS  641 (820)
Q Consensus       565 ~~~~~~~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~  641 (820)
                             +|++|++++|.+++.  +|..+..+++|++|++++|++++ +|..+..+++|++|++++|++.+..| ..+..
T Consensus       351 -------~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  422 (606)
T 3vq2_A          351 -------SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLS  422 (606)
T ss_dssp             -------TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTT
T ss_pred             -------CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhc
Confidence                   555666666655544  25566666666666666666653 44566666666666666666666555 45666


Q ss_pred             CCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccc-cCCcccCCCCCCCEEeCcCCCCccccchhccccccccc
Q 045139          642 FTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHG-RVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTA  720 (820)
Q Consensus       642 l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  720 (820)
                      +++|++|++++|++++..|..+. .+++|++|++++|++++ .+|..+..+++|+.|++++|++++..|..+.+++.|  
T Consensus       423 l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--  499 (606)
T 3vq2_A          423 LEKLLYLDISYTNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL--  499 (606)
T ss_dssp             CTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC--
T ss_pred             cccCCEEECcCCCCCccchhhhc-CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC--
Confidence            66666666666666666666555 56666666666666665 356666666666666666666666666666665555  


Q ss_pred             cccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCccc
Q 045139          721 NKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSK  799 (820)
Q Consensus       721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~  799 (820)
                                                             +.|+|++|++++.+| .++.+++|++|++++|+++ .+|..
T Consensus       500 ---------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~  539 (606)
T 3vq2_A          500 ---------------------------------------QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGI  539 (606)
T ss_dssp             ---------------------------------------CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESC
T ss_pred             ---------------------------------------CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHh
Confidence                                                   566666666666656 6666666666666666666 45555


Q ss_pred             ccCCC-CCCeEeCCCCcCcc
Q 045139          800 IGGLT-LLNSLDLSKNMLMR  818 (820)
Q Consensus       800 l~~l~-~L~~LdLs~N~l~g  818 (820)
                      +..++ +|++||+++|++++
T Consensus       540 ~~~l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          540 LQHFPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             GGGSCTTCCEEECCSCCCCC
T ss_pred             HhhhcccCcEEEccCCCccc
Confidence            66665 46666666666655

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.7e-54  Score=502.39  Aligned_cols=496  Identities=19%  Similarity=0.268  Sum_probs=308.7

Q ss_pred             CcCCHHHHHHHHHhhccCCCCC--------CCCCCCCCCCCCCCCccc---CceEecCCCCcEEEEEcCCCCCCCCcccc
Q 045139           39 IKCIERERQALLMFKQGLIDEY--------GHLSSWGNEDDKKDCCKW---RGVSCSNQTGHVTMLNLQFRSYMPLRGNI  107 (820)
Q Consensus        39 ~~~~~~~~~~l~~~~~~~~~~~--------~~~~~W~~~~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~~~~l~g~i  107 (820)
                      ......|+.||.++++++.++.        ...++|.   .+.+||.|   .||+|+.. |||+.|+|++   +++.|.+
T Consensus        25 ~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~---~~l~g~l   97 (636)
T 4eco_A           25 TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNSN-GRVTGLSLEG---FGASGRV   97 (636)
T ss_dssp             CCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECTT-CCEEEEECTT---SCCEEEE
T ss_pred             hhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcCC-CCEEEEEecC---cccCCcC
Confidence            3355679999999999886432        2345897   47899999   99999754 8999999999   9999999


Q ss_pred             cccccCCCCCCEEECcCCCCCCc-----------ccCccccCCCCCCEEeccCCCCCCCCCccCCCC-CCCcEEeCCCCc
Q 045139          108 SSSLIGLQHLNYLNMKYNDFGGK-----------QIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNL-TSLQYLDLSFNF  175 (820)
Q Consensus       108 ~~~l~~l~~L~~L~Ls~n~l~~~-----------~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~n~  175 (820)
                      |++++++++|++|||++|.+...           .+|...  +.+|+ ++++++.+.+.+|..++.+ ..+..+++... 
T Consensus        98 p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~-  173 (636)
T 4eco_A           98 PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQK-  173 (636)
T ss_dssp             CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSC-
T ss_pred             ChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccc-
Confidence            99999999999999999976210           133333  45566 7777777776666555421 11112221111 


Q ss_pred             cccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEEC--cCC
Q 045139          176 DMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDL--SLN  253 (820)
Q Consensus       176 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~L--s~n  253 (820)
                                              .+..        ...                            ..++.+.+  ..|
T Consensus       174 ------------------------~~~~--------~~~----------------------------~~l~~l~l~~~~n  193 (636)
T 4eco_A          174 ------------------------SIKK--------SSR----------------------------ITLKDTQIGQLSN  193 (636)
T ss_dssp             ------------------------CCCC--------CCC----------------------------CCCCTTTTTCCSC
T ss_pred             ------------------------cccc--------ccc----------------------------cchhhhhhccccC
Confidence                                    0000        000                            11111111  234


Q ss_pred             CCCCchhhhhhccCCCCcEEEccCCcccCC-----------------CCCCCCC--CCCCCCEEECCCCCCC-Ccchhhh
Q 045139          254 DVSNSVYYWLFNSSSSLVYLDLSSNKLQGP-----------------IPDSAFP--NPTSLSYLDLSNNQLV-SVPKSFR  313 (820)
Q Consensus       254 ~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~-----------------ip~~~l~--~l~~L~~L~Ls~n~l~-~ip~~l~  313 (820)
                      .+++ +|..+.++. +|++|++++|.++|.                 +|.. ++  ++++|++|++++|++. .+|..|+
T Consensus       194 ~l~~-ip~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~  270 (636)
T 4eco_A          194 NITF-VSKAVMRLT-KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLK  270 (636)
T ss_dssp             EEEE-ECGGGGGCT-TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred             CCcc-CCHHHhccc-CCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHh
Confidence            5555 565555555 666666666666653                 6665 66  6666777777666655 5666666


Q ss_pred             ccCCCcEEEcCCCC-CCC-cchhhhhhc------ccCCcCCccEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEc
Q 045139          314 NLCRLRALYQDSNN-LTD-LLPNLFLKL------SNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYL  385 (820)
Q Consensus       314 ~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L  385 (820)
                      ++++|++|++++|+ +++ .+|..+..+      +     +|++|++++|.++                           
T Consensus       271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~-----~L~~L~L~~n~l~---------------------------  318 (636)
T 4eco_A          271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGE-----KIQIIYIGYNNLK---------------------------  318 (636)
T ss_dssp             TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG-----TCCEEECCSSCCS---------------------------
T ss_pred             cCCCCCEEECcCCCCCccccchHHHHhhhccccCC-----CCCEEECCCCcCC---------------------------
Confidence            77777777777776 666 666666554      2     3444444443333                           


Q ss_pred             cCCcccccccc--cccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccC
Q 045139          386 NNNRFTGTLTK--SIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQ  463 (820)
Q Consensus       386 ~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~  463 (820)
                             .+|.  .++++++|++|++++|+++|.+|  .++.+++|++|++++|.+.                       
T Consensus       319 -------~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~-----------------------  366 (636)
T 4eco_A          319 -------TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT-----------------------  366 (636)
T ss_dssp             -------SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-----------------------
T ss_pred             -------ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-----------------------
Confidence                   3333  45555555555555555554444  3444444444444444432                       


Q ss_pred             CCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCC-cEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCC
Q 045139          464 GPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPN-LYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIP  542 (820)
Q Consensus       464 ~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~-L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p  542 (820)
                                                .+|.++..+ ++ |++|++++|+++ .+|..+....                  
T Consensus       367 --------------------------~lp~~l~~l-~~~L~~L~Ls~N~l~-~lp~~~~~~~------------------  400 (636)
T 4eco_A          367 --------------------------EIPANFCGF-TEQVENLSFAHNKLK-YIPNIFDAKS------------------  400 (636)
T ss_dssp             --------------------------ECCTTSEEE-CTTCCEEECCSSCCS-SCCSCCCTTC------------------
T ss_pred             --------------------------cccHhhhhh-cccCcEEEccCCcCc-ccchhhhhcc------------------
Confidence                                      222222222 23 555555555444 2332111100                  


Q ss_pred             CCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccCcccc-------cCCCCcEEEcCCCeeeecCCC-C
Q 045139          543 PIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSK-------NWQKLTVLNLANNKFSGKIPD-S  614 (820)
Q Consensus       543 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~-~  614 (820)
                           +                      .+|++|++++|.+++.+|..+.       .+++|++|++++|++++ +|. .
T Consensus       401 -----l----------------------~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~  452 (636)
T 4eco_A          401 -----V----------------------SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKEL  452 (636)
T ss_dssp             -----S----------------------SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHH
T ss_pred             -----c----------------------CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc-CCHHH
Confidence                 0                      0678888888888888888777       77788888888888884 444 3


Q ss_pred             cccccCCcEEeccCCcccccCCcch-hcC-------CCCCEEECCCCcCccccCcchh-cCCCCccEEEcCcccccccCC
Q 045139          615 MDFNCMMLSLHLRNNSFIGELPSSV-KSF-------TQLTVLDLGHNKISGIIPAWIG-DSLPDLVVLSLRSNNFHGRVP  685 (820)
Q Consensus       615 l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l-------~~L~~L~Ls~N~l~~~~p~~l~-~~l~~L~~L~L~~N~l~~~~p  685 (820)
                      +..+++|++|++++|+++ .+|... ...       ++|++|++++|+++ .+|..++ ..+++|+.|+|++|++++ +|
T Consensus       453 ~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip  529 (636)
T 4eco_A          453 FSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FP  529 (636)
T ss_dssp             HHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CC
T ss_pred             HccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cC
Confidence            455788888888888887 444433 322       27888888888887 6776664 357788888888888886 77


Q ss_pred             cccCCCCCCCEEeC------cCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeeccccccccccCce
Q 045139          686 VQVCHLQRIQVLDL------SQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLV  759 (820)
Q Consensus       686 ~~l~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  759 (820)
                      ..+..+++|+.|++      ++|++.+.+|..+.+++.|                                         
T Consensus       530 ~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L-----------------------------------------  568 (636)
T 4eco_A          530 TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL-----------------------------------------  568 (636)
T ss_dssp             CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSC-----------------------------------------
T ss_pred             hhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCC-----------------------------------------
Confidence            77778888888888      4466667777777766666                                         


Q ss_pred             EEEECCCCcCeecCC-CcccccCCCEEeCCCCccc
Q 045139          760 KSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLT  793 (820)
Q Consensus       760 ~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~  793 (820)
                      +.|||++|++ +.|| .+.  ++|+.|++++|++.
T Consensus       569 ~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          569 TQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             CEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred             CEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence            6777777777 4677 544  67777777777655

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=6.8e-51  Score=475.34  Aligned_cols=509  Identities=19%  Similarity=0.176  Sum_probs=348.8

Q ss_pred             CCcEEEEEcCCCCCCCCcccccccccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCC
Q 045139           87 TGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSL  166 (820)
Q Consensus        87 ~~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  166 (820)
                      ..+++.|+|++   +.+++..+..|.++++|++|++++|.+++. .|..|+++++|++|+|++|.+++..|..|+++++|
T Consensus        31 ~~~l~~L~Ls~---n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  106 (606)
T 3vq2_A           31 PSSTKNIDLSF---NPLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL  106 (606)
T ss_dssp             CTTCCEEECTT---SCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred             CCCcCEEECCC---CCcCEeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCCcccC
Confidence            35799999999   889988888999999999999999999885 68889999999999999999998889999999999


Q ss_pred             cEEeCCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCcc
Q 045139          167 QYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLA  246 (820)
Q Consensus       167 ~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~  246 (820)
                      ++|++++| ......+..++++++|++|++++|.+.+. .+|..++++++|++|++++|.+++..+..+..+.++...++
T Consensus       107 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~  184 (606)
T 3vq2_A          107 ENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSC-KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL  184 (606)
T ss_dssp             CEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSCCCCC-CCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCC
T ss_pred             CEEEccCC-ccccccccccCCCCCCCEEeCCCCcccce-echHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccc
Confidence            99999999 33344445689999999999999999764 35778999999999999999999988854444444422366


Q ss_pred             EEECcCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCC
Q 045139          247 HLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSN  326 (820)
Q Consensus       247 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n  326 (820)
                      +|++++|.++ .++...+... +|++|++++|.+++......+++++.|+.+++..+.+....       .+        
T Consensus       185 ~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-------~l--------  247 (606)
T 3vq2_A          185 SLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER-------NL--------  247 (606)
T ss_dssp             EEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC-------CC--------
T ss_pred             eeeccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCC-------cc--------
Confidence            9999999998 4556666666 89999999999875443344889999999988655443110       00        


Q ss_pred             CCCCcchhhhhhcccCCcCCccEEEc-CCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCC
Q 045139          327 NLTDLLPNLFLKLSNCSRDTLEILQL-NSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLE  405 (820)
Q Consensus       327 ~l~~~~~~~~~~l~~~~~~~L~~L~L-~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~  405 (820)
                        ....+..+..+...   .++.+++ ..|.+.+.+|.+..+++|+.|++++|.          +. .+| .+..+++|+
T Consensus       248 --~~~~~~~~~~l~~l---~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~----------~~-~l~-~l~~~~~L~  310 (606)
T 3vq2_A          248 --EIFEPSIMEGLCDV---TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS----------IK-YLE-DVPKHFKWQ  310 (606)
T ss_dssp             --SCCCGGGGTTGGGS---EEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCC----------CC-CCC-CCCTTCCCS
T ss_pred             --cccChHHhhhhhhc---cHhheeccccccccccccccccCCCCCEEEecCcc----------ch-hhh-hccccccCC
Confidence              01111111111100   3455555 455555555555555666655443333          22 233 566667777


Q ss_pred             EEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCC
Q 045139          406 LLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAA  485 (820)
Q Consensus       406 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n  485 (820)
                      .|++++|.+ +.+|.  + .+++|++|++++|+.....                          .+..+++|++|++++|
T Consensus       311 ~L~l~~n~l-~~lp~--~-~l~~L~~L~l~~n~~~~~~--------------------------~~~~l~~L~~L~ls~n  360 (606)
T 3vq2_A          311 SLSIIRCQL-KQFPT--L-DLPFLKSLTLTMNKGSISF--------------------------KKVALPSLSYLDLSRN  360 (606)
T ss_dssp             EEEEESCCC-SSCCC--C-CCSSCCEEEEESCSSCEEC--------------------------CCCCCTTCCEEECCSS
T ss_pred             EEEcccccC-ccccc--C-CCCccceeeccCCcCccch--------------------------hhccCCCCCEEECcCC
Confidence            777777777 44553  3 6677777777776442211                          1223444555555555


Q ss_pred             CccCC--CCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccc
Q 045139          486 EISDT--VPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLS  563 (820)
Q Consensus       486 ~i~~~--~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~  563 (820)
                      .+++.  +|..+... ++|++|++++|.+++.. .                         .+..+.              
T Consensus       361 ~l~~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~-~-------------------------~~~~l~--------------  399 (606)
T 3vq2_A          361 ALSFSGCCSYSDLGT-NSLRHLDLSFNGAIIMS-A-------------------------NFMGLE--------------  399 (606)
T ss_dssp             CEEEEEECCHHHHCC-SCCCEEECCSCSEEEEC-C-------------------------CCTTCT--------------
T ss_pred             ccCCCcchhhhhccC-CcccEeECCCCccccch-h-------------------------hccCCC--------------
Confidence            44433  23333332 34555555555443211 1                         111111              


Q ss_pred             hhhccccccccEEEccCCccccccC-cccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccc-cCCcchhc
Q 045139          564 FLCQISDEHFRYLDLSDNLLSGELP-NCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIG-ELPSSVKS  641 (820)
Q Consensus       564 ~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~  641 (820)
                              +|+.|++++|++++..| ..+..+++|++|++++|++.+..|..++.+++|++|++++|++++ .+|..+..
T Consensus       400 --------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  471 (606)
T 3vq2_A          400 --------ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN  471 (606)
T ss_dssp             --------TCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred             --------CCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc
Confidence                    66777777777776666 567777777777777777777777777777777777777777776 36777777


Q ss_pred             CCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccc
Q 045139          642 FTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLT  716 (820)
Q Consensus       642 l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  716 (820)
                      +++|++|++++|++++..|..+. .+++|++|++++|++++..|..+..+++|+.|++++|+++ .+|..+..++
T Consensus       472 l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~  544 (606)
T 3vq2_A          472 TTNLTFLDLSKCQLEQISWGVFD-TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFP  544 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSC
T ss_pred             CCCCCEEECCCCcCCccChhhhc-ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhc
Confidence            77777777777777766666665 6777777777777777777777777777777777777776 5666555554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.4e-51  Score=487.41  Aligned_cols=489  Identities=18%  Similarity=0.223  Sum_probs=316.2

Q ss_pred             CCCcCCHHHHHHHHHhhccCCCCCCCCCCCCCCC--CCCCC--ccc------------CceEecCCCCcEEEEEcCCCCC
Q 045139           37 ADIKCIERERQALLMFKQGLIDEYGHLSSWGNED--DKKDC--CKW------------RGVSCSNQTGHVTMLNLQFRSY  100 (820)
Q Consensus        37 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~W~~~~--~~~~~--c~w------------~gv~c~~~~~~v~~L~L~~~~~  100 (820)
                      ..+.+..+|++||++||+++.+|     +|+...  ...+|  |.|            .||+|+. .+||+.|+|++   
T Consensus       262 ~~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~---  332 (876)
T 4ecn_A          262 KETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG---  332 (876)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT---
T ss_pred             cccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc---
Confidence            34456788999999999999876     886411  01345  999            9999975 68999999999   


Q ss_pred             CCCcccccccccCCCCCCEEEC-cCCCCCCcccCcccc------------------------------------------
Q 045139          101 MPLRGNISSSLIGLQHLNYLNM-KYNDFGGKQIPAFIG------------------------------------------  137 (820)
Q Consensus       101 ~~l~g~i~~~l~~l~~L~~L~L-s~n~l~~~~~p~~i~------------------------------------------  137 (820)
                      +++.|.+|++|++|++|++||| ++|.+.|. .|....                                          
T Consensus       333 ~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~  411 (876)
T 4ecn_A          333 FGAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN  411 (876)
T ss_dssp             TCCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTC
T ss_pred             CCCCCcCchHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhC
Confidence            9999999999999999999999 88877664 221110                                          


Q ss_pred             ---------CCCCCCEEeccC--CCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCeeeCCCccCCCC--
Q 045139          138 ---------SLKNIRHLDLSN--AGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEA--  204 (820)
Q Consensus       138 ---------~l~~L~~L~Ls~--n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--  204 (820)
                               ....++.+.+..  |.+++ +|..++++++|++|+|++                         |.+++.  
T Consensus       412 ~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~-------------------------N~Lsg~~i  465 (876)
T 4ecn_A          412 PEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFAN-------------------------SPFTYDNI  465 (876)
T ss_dssp             TTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEES-------------------------CCCCGGGB
T ss_pred             ccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcC-------------------------CcCCCCcc
Confidence                     111122222222  44443 454555555555555554                         454440  


Q ss_pred             -------------ccHHHHhC--CCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCC-CCC-chhhhhhccC
Q 045139          205 -------------TDWLQVVS--QLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLND-VSN-SVYYWLFNSS  267 (820)
Q Consensus       205 -------------~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~-l~~-~~~~~~~~~~  267 (820)
                                   ..+|..++  ++++|++|+|++|.+.+.+|   ..+.++ ++|++|++++|. +++ .+|..+..+.
T Consensus       466 ~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP---~~l~~L-~~L~~L~Ls~N~~lsg~~iP~~i~~L~  541 (876)
T 4ecn_A          466 AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP---DFLYDL-PELQSLNIACNRGISAAQLKADWTRLA  541 (876)
T ss_dssp             SSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC---GGGGGC-SSCCEEECTTCTTSCHHHHHHHHHHHH
T ss_pred             cccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh---HHHhCC-CCCCEEECcCCCCcccccchHHHHhhh
Confidence                         02566666  88888888888888888888   566777 888888888887 877 7777665432


Q ss_pred             ------CCCcEEEccCCcccCCCCC--CCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhc
Q 045139          268 ------SSLVYLDLSSNKLQGPIPD--SAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKL  339 (820)
Q Consensus       268 ------~~L~~L~Ls~n~l~g~ip~--~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l  339 (820)
                            ++|++|++++|.++ .+|.  . ++++++|++|++++|+++.+| .|+.+++|++|++++|+++ .+|..+..+
T Consensus       542 ~~~~~l~~L~~L~Ls~N~L~-~ip~~~~-l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l  617 (876)
T 4ecn_A          542 DDEDTGPKIQIFYMGYNNLE-EFPASAS-LQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAF  617 (876)
T ss_dssp             HCTTTTTTCCEEECCSSCCC-BCCCHHH-HTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEE
T ss_pred             hcccccCCccEEEeeCCcCC-ccCChhh-hhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHHhhc
Confidence                  47888888888888 7887  5 888888888888888888888 7888888888888888888 677777777


Q ss_pred             ccCCcCC-ccEEEcCCCCCcccCCC-CcCcCC--CcEEecCCCcccEEEccCCcccccccc---ccc--CCCCCCEEecC
Q 045139          340 SNCSRDT-LEILQLNSNMLRGSLPD-ITLFSS--LKELHLYDNMLDVLYLNNNRFTGTLTK---SIG--QLSQLELLDVA  410 (820)
Q Consensus       340 ~~~~~~~-L~~L~L~~n~l~~~~p~-~~~l~~--L~~L~l~~n~L~~L~L~~n~l~~~~~~---~l~--~l~~L~~L~L~  410 (820)
                      +     + |+.|++++|.+. .+|. +..++.  |+.|          ++++|.+.+.+|.   .+.  .+++|+.|+++
T Consensus       618 ~-----~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L----------~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls  681 (876)
T 4ecn_A          618 T-----DQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSV----------DFSYNKIGSEGRNISCSMDDYKGINASTVTLS  681 (876)
T ss_dssp             C-----TTCCEEECCSSCCC-SCCSCCCTTCSSCEEEE----------ECCSSCTTTTSSSCSSCTTTCCCCCEEEEECC
T ss_pred             c-----ccCCEEECcCCCCC-cCchhhhccccCCCCEE----------ECcCCcCCCccccchhhhccccCCCcCEEEcc
Confidence            7     6 888888888887 5555 443322  5544          4445555554432   122  23467777777


Q ss_pred             CCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCC
Q 045139          411 SNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDT  490 (820)
Q Consensus       411 ~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~  490 (820)
                      +|.++. +|...+..+++|+.|++++|++. .                                                
T Consensus       682 ~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~-~------------------------------------------------  711 (876)
T 4ecn_A          682 YNEIQK-FPTELFATGSPISTIILSNNLMT-S------------------------------------------------  711 (876)
T ss_dssp             SSCCCS-CCHHHHHTTCCCSEEECCSCCCS-C------------------------------------------------
T ss_pred             CCcCCc-cCHHHHccCCCCCEEECCCCcCC-c------------------------------------------------
Confidence            777764 55545556677777777666653 1                                                


Q ss_pred             CCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhcccc
Q 045139          491 VPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISD  570 (820)
Q Consensus       491 ~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~  570 (820)
                      +|..++....                +                          ...++.                     
T Consensus       712 ip~~~~~~~~----------------~--------------------------~l~nl~---------------------  728 (876)
T 4ecn_A          712 IPENSLKPKD----------------G--------------------------NYKNTY---------------------  728 (876)
T ss_dssp             CCTTSSSCTT----------------S--------------------------CCTTGG---------------------
T ss_pred             cChHHhcccc----------------c--------------------------cccccC---------------------
Confidence            1111111000                0                          000000                     


Q ss_pred             ccccEEEccCCccccccCcccc--cCCCCcEEEcCCCeeeecCCCCcccccCCcEEec------cCCcccccCCcchhcC
Q 045139          571 EHFRYLDLSDNLLSGELPNCSK--NWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHL------RNNSFIGELPSSVKSF  642 (820)
Q Consensus       571 ~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L------s~N~l~~~~p~~l~~l  642 (820)
                       +|+.|++++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|+|      ++|++.+.+|..+.++
T Consensus       729 -~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L  805 (876)
T 4ecn_A          729 -LLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC  805 (876)
T ss_dssp             -GCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred             -CccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence             3444444444444 3444443  44444555555554443 4444444445555544      4477777777777777


Q ss_pred             CCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCc
Q 045139          643 TQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNIS  705 (820)
Q Consensus       643 ~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  705 (820)
                      ++|++|+|++|++ +.+|..+.   ++|+.|+|++|++....+..++....+..+.|.+|+..
T Consensus       806 ~~L~~L~Ls~N~L-~~Ip~~l~---~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          806 PSLIQLQIGSNDI-RKVDEKLT---PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             SSCCEEECCSSCC-CBCCSCCC---SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred             CCCCEEECCCCCC-CccCHhhc---CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence            7777777777777 57777643   47777777777777655555555555556666666554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=5.7e-50  Score=483.04  Aligned_cols=520  Identities=22%  Similarity=0.239  Sum_probs=251.3

Q ss_pred             CCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCC-CccCCCCCCCcEEeCCCCccccccchhhccCCCCCCe
Q 045139          115 QHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRV-PYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEY  193 (820)
Q Consensus       115 ~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~  193 (820)
                      ++|++|||++|.+++. .|..|+++++|++|+|++|...+.+ |.+|+++++|++|+|++|                   
T Consensus        24 ~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-------------------   83 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-------------------   83 (844)
T ss_dssp             TTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-------------------
T ss_pred             CCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-------------------
Confidence            4556666666665553 4555566666666666665444444 444555555555555544                   


Q ss_pred             eeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhh-hhhccCCCCcE
Q 045139          194 VRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYY-WLFNSSSSLVY  272 (820)
Q Consensus       194 L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~~~~L~~  272 (820)
                            .+.+  ..|..++++++|++|+|++|.+++..+.. ..+.++ ++|++|++++|.+++..+. .+.++. +|++
T Consensus        84 ------~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~L-~~L~~L~Ls~N~l~~~~~~~~~~~L~-~L~~  152 (844)
T 3j0a_A           84 ------KIYF--LHPDAFQGLFHLFELRLYFCGLSDAVLKD-GYFRNL-KALTRLDLSKNQIRSLYLHPSFGKLN-SLKS  152 (844)
T ss_dssp             ------CCCE--ECTTSSCSCSSCCCEECTTCCCSSCCSTT-CCCSSC-SSCCEEEEESCCCCCCCCCGGGGTCS-SCCE
T ss_pred             ------cCcc--cCHhHccCCcccCEeeCcCCCCCcccccC-cccccc-CCCCEEECCCCcccccccchhHhhCC-CCCE
Confidence                  3332  12445666666666666666666544310 113444 5555555555555443332 222222 4555


Q ss_pred             EEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhcc--CCCcEEEcCCCCCCCcchhhhhhccc-CCcCCccE
Q 045139          273 LDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNL--CRLRALYQDSNNLTDLLPNLFLKLSN-CSRDTLEI  349 (820)
Q Consensus       273 L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~-~~~~~L~~  349 (820)
                      |++++|.+++..+                        ..+..+  ++|+.|+++.|.+.+..|..+..+.. .....|+.
T Consensus       153 L~Ls~N~i~~~~~------------------------~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~  208 (844)
T 3j0a_A          153 IDFSSNQIFLVCE------------------------HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEI  208 (844)
T ss_dssp             EEEESSCCCCCCS------------------------GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSE
T ss_pred             EECCCCcCCeeCH------------------------HHcccccCCccceEECCCCccccccccchhhcCCccccCceeE
Confidence            5555554443333                        333333  44444444444444444433332220 00002455


Q ss_pred             EEcCCCCCcccCCC-CcC---cCCCcEEecCCCcccEEEccCCcccccccccccCC--CCCCEEecCCCcCccccCHHHh
Q 045139          350 LQLNSNMLRGSLPD-ITL---FSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQL--SQLELLDVASNSLKGMITEAHL  423 (820)
Q Consensus       350 L~L~~n~l~~~~p~-~~~---l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~l  423 (820)
                      |++++|.+.+..+. +..   .+.++.+.+..+... -....+.+.+..+..+..+  ++|+.|++++|.+.+..+. .+
T Consensus       209 L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~-~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~-~~  286 (844)
T 3j0a_A          209 LDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG-AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR-VF  286 (844)
T ss_dssp             EBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCB-CSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC-CS
T ss_pred             EecCCCcCchhHHHHHHhhcCcccccceeccccccc-ccccccccCCCChhhhhccccCCccEEECCCCcccccChh-hh
Confidence            55555554444443 211   123333333321110 1112233333333444443  5667777777766664443 56


Q ss_pred             hcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcE
Q 045139          424 SNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLY  503 (820)
Q Consensus       424 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~  503 (820)
                      ..+++|+.|++++|.+.+..+                        ..+..+++|++|++++|.+++..|..+..+ ++|+
T Consensus       287 ~~l~~L~~L~L~~n~i~~~~~------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~  341 (844)
T 3j0a_A          287 ETLKDLKVLNLAYNKINKIAD------------------------EAFYGLDNLQVLNLSYNLLGELYSSNFYGL-PKVA  341 (844)
T ss_dssp             SSCCCCCEEEEESCCCCEECT------------------------TTTTTCSSCCEEEEESCCCSCCCSCSCSSC-TTCC
T ss_pred             hcCCCCCEEECCCCcCCCCCh------------------------HHhcCCCCCCEEECCCCCCCccCHHHhcCC-CCCC
Confidence            666667777766666654433                        344455555555555555555445444433 4566


Q ss_pred             EEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCcc
Q 045139          504 YLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLL  583 (820)
Q Consensus       504 ~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l  583 (820)
                      .|++++|++.+..+..+..++                                               +|++|++++|.+
T Consensus       342 ~L~L~~N~i~~~~~~~~~~l~-----------------------------------------------~L~~L~Ls~N~l  374 (844)
T 3j0a_A          342 YIDLQKNHIAIIQDQTFKFLE-----------------------------------------------KLQTLDLRDNAL  374 (844)
T ss_dssp             EEECCSCCCCCCCSSCSCSCC-----------------------------------------------CCCEEEEETCCS
T ss_pred             EEECCCCCCCccChhhhcCCC-----------------------------------------------CCCEEECCCCCC
Confidence            666666655544443332222                                               334444444443


Q ss_pred             ccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccC-CcchhcCCCCCEEECCCCcCccccCcc
Q 045139          584 SGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGEL-PSSVKSFTQLTVLDLGHNKISGIIPAW  662 (820)
Q Consensus       584 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~  662 (820)
                      ++ +    ..+++|+.|++++|+++ .+|..   ..+++.|++++|++.+.. +..+.++++|++|++++|++++..+..
T Consensus       375 ~~-i----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  445 (844)
T 3j0a_A          375 TT-I----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ  445 (844)
T ss_dssp             CC-C----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS
T ss_pred             Cc-c----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc
Confidence            31 1    11344444444444444 22222   234445555555554321 122334555555555555555433322


Q ss_pred             hhcCCCCccEEEcCccccc-----ccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccc
Q 045139          663 IGDSLPDLVVLSLRSNNFH-----GRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYY  737 (820)
Q Consensus       663 l~~~l~~L~~L~L~~N~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~  737 (820)
                      ....+++|+.|++++|.++     +..|..+..+++|+.|+|++|++++..|..+.+++.|                   
T Consensus       446 ~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------------  506 (844)
T 3j0a_A          446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL-------------------  506 (844)
T ss_dssp             SSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSC-------------------
T ss_pred             ccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhh-------------------
Confidence            2223455555555555554     2333445555666666666666665555555555555                   


Q ss_pred             cCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCcC
Q 045139          738 NDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML  816 (820)
Q Consensus       738 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l  816 (820)
                                            +.|||++|++++.+| .+.  ++|+.|+|++|++++.+|+.|   .+|+.|++++|++
T Consensus       507 ----------------------~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~  559 (844)
T 3j0a_A          507 ----------------------RGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKF  559 (844)
T ss_dssp             ----------------------SEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECC
T ss_pred             ----------------------heeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCc
Confidence                                  556666666664444 332  566666666666666666543   3455666666666


Q ss_pred             cc
Q 045139          817 MR  818 (820)
Q Consensus       817 ~g  818 (820)
                      .|
T Consensus       560 ~C  561 (844)
T 3j0a_A          560 IC  561 (844)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-47  Score=462.22  Aligned_cols=522  Identities=22%  Similarity=0.245  Sum_probs=321.6

Q ss_pred             cccCceEecCCCCcEEEEEcCCCCCCCCcccccccccCCCCCCEEECcCCCCCCccc-CccccCCCCCCEEeccCCCCCC
Q 045139           76 CKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQI-PAFIGSLKNIRHLDLSNAGFTG  154 (820)
Q Consensus        76 c~w~gv~c~~~~~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~~-p~~i~~l~~L~~L~Ls~n~l~~  154 (820)
                      |.|.+|.+  ...+++.|+|++   +.+++..|.+|.++++|++|||++|...+. + |..|+++++|++|+|++|.+++
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~---N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N~l~~   87 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSF---NYIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSKIYF   87 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEES---CCCCEECSSSCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTCCCCE
T ss_pred             CCCCCCCC--CCCCcCEEECCC---CcCCccChhHCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCCcCcc
Confidence            56777776  467899999998   889988899999999999999999977665 5 7889999999999999999998


Q ss_pred             CCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccc
Q 045139          155 RVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASS  234 (820)
Q Consensus       155 ~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~  234 (820)
                      ..|..|+++++|++|+|++| ......+..                        ..++++++|++|++++|.+++..+. 
T Consensus        88 ~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~------------------------~~~~~L~~L~~L~Ls~N~l~~~~~~-  141 (844)
T 3j0a_A           88 LHPDAFQGLFHLFELRLYFC-GLSDAVLKD------------------------GYFRNLKALTRLDLSKNQIRSLYLH-  141 (844)
T ss_dssp             ECTTSSCSCSSCCCEECTTC-CCSSCCSTT------------------------CCCSSCSSCCEEEEESCCCCCCCCC-
T ss_pred             cCHhHccCCcccCEeeCcCC-CCCcccccC------------------------ccccccCCCCEEECCCCcccccccc-
Confidence            88999999999999999998 221111111                        1144455555555555555444331 


Q ss_pred             cccccCCcCCccEEECcCCCCCCchhhhhhccC-CCCcEEEccCCcccCCCCCCCCCCCCC------CCEEECCCCCCC-
Q 045139          235 SVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSS-SSLVYLDLSSNKLQGPIPDSAFPNPTS------LSYLDLSNNQLV-  306 (820)
Q Consensus       235 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~-~~L~~L~Ls~n~l~g~ip~~~l~~l~~------L~~L~Ls~n~l~-  306 (820)
                       ..++++ ++|++|++++|.+++..+..+.... ++|++|++++|.+.+.+|.. ++.+++      |++|++++|.++ 
T Consensus       142 -~~~~~L-~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~  218 (844)
T 3j0a_A          142 -PSFGKL-NSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD-WGKCMNPFRNMVLEILDVSGNGWTV  218 (844)
T ss_dssp             -GGGGTC-SSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCC-CCSSSCTTTTCCBSEEBCSSCCSST
T ss_pred             -hhHhhC-CCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccc-hhhcCCccccCceeEEecCCCcCch
Confidence             234444 5555555555555555555444431 26666677666666655554 444433      666666666555 


Q ss_pred             Ccchhhhcc---CCCcEEEcCC---------CCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCC-CcCcCCCcEE
Q 045139          307 SVPKSFRNL---CRLRALYQDS---------NNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPD-ITLFSSLKEL  373 (820)
Q Consensus       307 ~ip~~l~~l---~~L~~L~L~~---------n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~-~~~l~~L~~L  373 (820)
                      .+|..+...   ..++.+.++.         +.+.+..+..|..+.   ..+|+.|++++|.+.+..|. +..+++|+.|
T Consensus       219 ~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  295 (844)
T 3j0a_A          219 DITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA---RSSVRHLDLSHGFVFSLNSRVFETLKDLKVL  295 (844)
T ss_dssp             TTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTT---TSCCCEEECTTCCCCEECSCCSSSCCCCCEE
T ss_pred             hHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccc---cCCccEEECCCCcccccChhhhhcCCCCCEE
Confidence            334333322   3455555542         222233333333321   11455555555555544444 4444444433


Q ss_pred             ecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCcccc
Q 045139          374 HLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFEL  453 (820)
Q Consensus       374 ~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L  453 (820)
                      +          +++|.+++..|..|..+++|++|++++|.+++..+. .+..+++|++|++++|.+..            
T Consensus       296 ~----------L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~i~~------------  352 (844)
T 3j0a_A          296 N----------LAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS-NFYGLPKVAYIDLQKNHIAI------------  352 (844)
T ss_dssp             E----------EESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC-SCSSCTTCCEEECCSCCCCC------------
T ss_pred             E----------CCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHH-HhcCCCCCCEEECCCCCCCc------------
Confidence            2          233333334444455555555555555555443333 34455555555555554433            


Q ss_pred             ceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceecc
Q 045139          454 NIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLS  533 (820)
Q Consensus       454 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls  533 (820)
                                  ..+..+..+++|+.|++++|.+++...      .++|+.|++++|+++.. |..   ...+ +.++++
T Consensus       353 ------------~~~~~~~~l~~L~~L~Ls~N~l~~i~~------~~~L~~L~l~~N~l~~l-~~~---~~~l-~~L~ls  409 (844)
T 3j0a_A          353 ------------IQDQTFKFLEKLQTLDLRDNALTTIHF------IPSIPDIFLSGNKLVTL-PKI---NLTA-NLIHLS  409 (844)
T ss_dssp             ------------CCSSCSCSCCCCCEEEEETCCSCCCSS------CCSCSEEEEESCCCCCC-CCC---CTTC-CEEECC
T ss_pred             ------------cChhhhcCCCCCCEEECCCCCCCcccC------CCCcchhccCCCCcccc-ccc---cccc-ceeecc
Confidence                        333344455555555555555543211      24555555555555522 221   1112 444444


Q ss_pred             CCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccCc-ccccCCCCcEEEcCCCeee----
Q 045139          534 ANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPN-CSKNWQKLTVLNLANNKFS----  608 (820)
Q Consensus       534 ~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~----  608 (820)
                      +|++++.                     -.........+|++|++++|++++..+. .+..+++|++|++++|.++    
T Consensus       410 ~N~l~~l---------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~  468 (844)
T 3j0a_A          410 ENRLENL---------------------DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE  468 (844)
T ss_dssp             SCCCCSS---------------------TTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCC
T ss_pred             cCccccC---------------------chhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccc
Confidence            4444431                     1000000111788888988888865443 4556788999999999886    


Q ss_pred             -ecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcc
Q 045139          609 -GKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQ  687 (820)
Q Consensus       609 -~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~  687 (820)
                       +..+..|..+++|++|+|++|++++..|..+.++++|++|+|++|++++..|..+   .++|+.|++++|++++..|..
T Consensus       469 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~---~~~L~~L~Ls~N~l~~~~~~~  545 (844)
T 3j0a_A          469 TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL---PANLEILDISRNQLLAPNPDV  545 (844)
T ss_dssp             SCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCC---CSCCCEEEEEEECCCCCCSCC
T ss_pred             cccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhh---hccccEEECCCCcCCCCChhH
Confidence             4445678888999999999999998888888899999999999999986554443   278999999999999888876


Q ss_pred             cCCCCCCCEEeCcCCCCcccc
Q 045139          688 VCHLQRIQVLDLSQNNISGTV  708 (820)
Q Consensus       688 l~~l~~L~~L~Ls~N~l~~~~  708 (820)
                      +   .+|+.|++++|++....
T Consensus       546 ~---~~L~~l~l~~Np~~C~c  563 (844)
T 3j0a_A          546 F---VSLSVLDITHNKFICEC  563 (844)
T ss_dssp             C---SSCCEEEEEEECCCCSS
T ss_pred             h---CCcCEEEecCCCccccc
Confidence            5   47888999999887643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.6e-47  Score=441.88  Aligned_cols=415  Identities=21%  Similarity=0.231  Sum_probs=238.0

Q ss_pred             CCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCC--cchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCC
Q 045139          269 SLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVS--VPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDT  346 (820)
Q Consensus       269 ~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~--ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~  346 (820)
                      +|++|++++|.++ .++...++++++|++|++++|.++.  +|..|+++++|++|++++|++++..+..+..+.     +
T Consensus       101 ~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----~  174 (570)
T 2z63_A          101 SLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-----Q  174 (570)
T ss_dssp             TCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHH-----T
T ss_pred             ccccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchh-----c
Confidence            6777777777776 4554447788888888888888874  677888888888888888888887777777777     6


Q ss_pred             c----cEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCccc-ccccccccCCCCCCEEecCCCcCccc----
Q 045139          347 L----EILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFT-GTLTKSIGQLSQLELLDVASNSLKGM----  417 (820)
Q Consensus       347 L----~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~----  417 (820)
                      |    +.+++++|.+.+..|......+|+.|++++          |... ..++..+..++.++...+....+...    
T Consensus       175 L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~----------n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~  244 (570)
T 2z63_A          175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN----------NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE  244 (570)
T ss_dssp             CTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEES----------CCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCE
T ss_pred             cchhhhhcccCCCCceecCHHHhccCcceeEeccc----------ccccccchhhhhcCccccceeeeccccccCchhhh
Confidence            6    778888888776666522222555554433          2111 12344555555555554432222110    


Q ss_pred             -cCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccc-cCCCCCchhhhcCCCccEEecCCCCccCCCCchh
Q 045139          418 -ITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGAC-KQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWF  495 (820)
Q Consensus       418 -~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~  495 (820)
                       ++...+..+++                      ..++.+.+..+ .+.+..|.++..+++|+.|++++|.+. .+|.++
T Consensus       245 ~~~~~~~~~l~~----------------------l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~  301 (570)
T 2z63_A          245 KFDKSALEGLCN----------------------LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFS  301 (570)
T ss_dssp             ECCTTTTGGGGG----------------------SEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCC
T ss_pred             hcchhhhccccc----------------------cchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhh
Confidence             01101111111                      12333444443 334455666666666666666666665 355555


Q ss_pred             hccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccE
Q 045139          496 WDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRY  575 (820)
Q Consensus       496 ~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~  575 (820)
                      ...  +|+.|++++|.+. .+|.  ..++                                               +|+.
T Consensus       302 ~~~--~L~~L~l~~n~~~-~l~~--~~l~-----------------------------------------------~L~~  329 (570)
T 2z63_A          302 YNF--GWQHLELVNCKFG-QFPT--LKLK-----------------------------------------------SLKR  329 (570)
T ss_dssp             SCC--CCSEEEEESCBCS-SCCB--CBCS-----------------------------------------------SCCE
T ss_pred             ccC--CccEEeeccCccc-ccCc--cccc-----------------------------------------------ccCE
Confidence            443  5666666666655 2222  1122                                               4555


Q ss_pred             EEccCCccccccCcccccCCCCcEEEcCCCeeeecC--CCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCC
Q 045139          576 LDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKI--PDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHN  653 (820)
Q Consensus       576 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  653 (820)
                      |++++|.+.+..+.  ..+++|++|++++|++++..  |..+..+++|++|++++|.+.+..+. +..+++|++|++++|
T Consensus       330 L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n  406 (570)
T 2z63_A          330 LTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHS  406 (570)
T ss_dssp             EEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTS
T ss_pred             EeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCC
Confidence            55555555444333  44555666666666555432  44555556666666666665543333 555666666666666


Q ss_pred             cCccccCc-chhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCc-cccchhccccccccccccCCcccccC
Q 045139          654 KISGIIPA-WIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNIS-GTVPQCLNNLTAMTANKSSNAMIRYP  731 (820)
Q Consensus       654 ~l~~~~p~-~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~~~~~~~~~~~~  731 (820)
                      ++.+..|. .+. .+++|++|++++|++.+..|..+..+++|++|++++|+++ +.+|..+.+++.|             
T Consensus       407 ~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L-------------  472 (570)
T 2z63_A          407 NLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL-------------  472 (570)
T ss_dssp             EEESCTTSCTTT-TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-------------
T ss_pred             ccccccchhhhh-cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC-------------
Confidence            66554442 233 5566666666666666555666666666666666666665 3455555555554             


Q ss_pred             CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEe
Q 045139          732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLD  810 (820)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~Ld  810 (820)
                                                  +.||+++|++++.+| .++.+++|++|++++|++++..|..|.++++|++||
T Consensus       473 ----------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  524 (570)
T 2z63_A          473 ----------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW  524 (570)
T ss_dssp             ----------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             ----------------------------CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEE
Confidence                                        566666666665555 566666666666666666665555566666666666


Q ss_pred             CCCCcCccc
Q 045139          811 LSKNMLMRA  819 (820)
Q Consensus       811 Ls~N~l~g~  819 (820)
                      +++|+++|.
T Consensus       525 l~~N~~~~~  533 (570)
T 2z63_A          525 LHTNPWDCS  533 (570)
T ss_dssp             CCSSCBCCC
T ss_pred             ecCCcccCC
Confidence            666666654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=8e-46  Score=429.46  Aligned_cols=495  Identities=22%  Similarity=0.237  Sum_probs=295.1

Q ss_pred             CCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCee
Q 045139          115 QHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYV  194 (820)
Q Consensus       115 ~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L  194 (820)
                      +++++||+++|.+++. .+..|+++++|++|+|++|.+++..|..|+++++|++|++++| ......+..++++++|++|
T Consensus        28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  105 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKL  105 (570)
T ss_dssp             SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEE
T ss_pred             ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCccccccc
Confidence            4688888888888774 5667888888888888888888776777888888888888888 3333444567778888888


Q ss_pred             eCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCC-CccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCC---
Q 045139          195 RLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSV-IASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSL---  270 (820)
Q Consensus       195 ~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L---  270 (820)
                      ++++|.+...+..  .++++++|++|++++|.+++. +|   ..+.++ ++|++|++++|.+++..+..+.... +|   
T Consensus       106 ~L~~n~l~~l~~~--~~~~l~~L~~L~L~~n~l~~~~lp---~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~~  178 (570)
T 2z63_A          106 VAVETNLASLENF--PIGHLKTLKELNVAHNLIQSFKLP---EYFSNL-TNLEHLDLSSNKIQSIYCTDLRVLH-QMPLL  178 (570)
T ss_dssp             ECTTSCCCCSTTC--SCTTCTTCCEEECCSSCCCCCCCC---GGGGGC-TTCCEEECTTSCCCEECGGGGHHHH-TCTTC
T ss_pred             cccccccccCCCc--cccccccccEEecCCCccceecCh---hhhccc-CCCCEEeCcCCccceecHHHccchh-ccchh
Confidence            8888887764322  377888888888888888773 46   556666 8888888888888776666666555 66   


Q ss_pred             -cEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCC--CcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCc
Q 045139          271 -VYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLV--SVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTL  347 (820)
Q Consensus       271 -~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~--~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L  347 (820)
                       ++|++++|.+++ ++..++... +|++|++++|...  .++..+..++.++...+....+...        .     .+
T Consensus       179 ~~~L~l~~n~l~~-~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~--------~-----~l  243 (570)
T 2z63_A          179 NLSLDLSLNPMNF-IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE--------G-----NL  243 (570)
T ss_dssp             CCEEECTTCCCCE-ECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC--------S-----SC
T ss_pred             hhhcccCCCCcee-cCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc--------h-----hh
Confidence             788888888884 444436555 7888888877544  4566677777776665543222210        0     11


Q ss_pred             cEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCC-cccccccccccCCCCCCEEecCCCcCccccCHHHhhcC
Q 045139          348 EILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNN-RFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNL  426 (820)
Q Consensus       348 ~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l  426 (820)
                      +.  +....       +..+++++        ++.++++++ .+.+..|..+..+++|+.|++++|.+++ +|. .+..+
T Consensus       244 ~~--~~~~~-------~~~l~~l~--------l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~-~~~~~  304 (570)
T 2z63_A          244 EK--FDKSA-------LEGLCNLT--------IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKD-FSYNF  304 (570)
T ss_dssp             EE--CCTTT-------TGGGGGSE--------EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCB-CCSCC
T ss_pred             hh--cchhh-------hccccccc--------hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhh-hhccC
Confidence            10  00000       22222221        124445555 5566666677777777777777777664 444 34555


Q ss_pred             CCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEE
Q 045139          427 SRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLN  506 (820)
Q Consensus       427 ~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~  506 (820)
                       +|++|++++|.+.                         .+|.  ..+                         ++|+.|+
T Consensus       305 -~L~~L~l~~n~~~-------------------------~l~~--~~l-------------------------~~L~~L~  331 (570)
T 2z63_A          305 -GWQHLELVNCKFG-------------------------QFPT--LKL-------------------------KSLKRLT  331 (570)
T ss_dssp             -CCSEEEEESCBCS-------------------------SCCB--CBC-------------------------SSCCEEE
T ss_pred             -CccEEeeccCccc-------------------------ccCc--ccc-------------------------cccCEEe
Confidence             6666666666552                         1111  122                         3455555


Q ss_pred             cCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccc
Q 045139          507 LSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGE  586 (820)
Q Consensus       507 ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  586 (820)
                      +++|.+.+..+.  ..++                                               +|++|++++|.+++.
T Consensus       332 l~~n~~~~~~~~--~~~~-----------------------------------------------~L~~L~l~~n~l~~~  362 (570)
T 2z63_A          332 FTSNKGGNAFSE--VDLP-----------------------------------------------SLEFLDLSRNGLSFK  362 (570)
T ss_dssp             EESCBSCCBCCC--CBCT-----------------------------------------------TCCEEECCSSCCBEE
T ss_pred             CcCCcccccccc--ccCC-----------------------------------------------CCCEEeCcCCccCcc
Confidence            555544332221  0111                                               444444444444433


Q ss_pred             c--CcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCC-cchhcCCCCCEEECCCCcCccccCcch
Q 045139          587 L--PNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELP-SSVKSFTQLTVLDLGHNKISGIIPAWI  663 (820)
Q Consensus       587 ~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l  663 (820)
                      .  |..+..+++|++|++++|++.+..+. +..+++|++|++++|.+.+..| ..+.++++|++|++++|++.+..|..+
T Consensus       363 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  441 (570)
T 2z63_A          363 GCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF  441 (570)
T ss_dssp             EEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred             ccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhh
Confidence            2  34455555555555555555543332 5555555555555555554443 345555555555555555555555555


Q ss_pred             hcCCCCccEEEcCccccc-ccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCcee
Q 045139          664 GDSLPDLVVLSLRSNNFH-GRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHAL  742 (820)
Q Consensus       664 ~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~  742 (820)
                      . .+++|++|++++|+++ +.+|..+..+++|++|++++|++++..|..+.+++.|                        
T Consensus       442 ~-~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------------------------  496 (570)
T 2z63_A          442 N-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL------------------------  496 (570)
T ss_dssp             T-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC------------------------
T ss_pred             h-cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC------------------------
Confidence            4 4555566666655555 3455555555666666666666555555555555544                        


Q ss_pred             EEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCc
Q 045139          743 LVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIP  797 (820)
Q Consensus       743 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip  797 (820)
                                       +.|++++|++++.+| .+..+++|+.|++++|.+++..|
T Consensus       497 -----------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          497 -----------------QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             -----------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             -----------------CEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence                             555666666655444 45555666666666666555544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.6e-46  Score=431.36  Aligned_cols=205  Identities=21%  Similarity=0.218  Sum_probs=136.5

Q ss_pred             CcccCceEecCCCCcEEEEEcCCCCCCCCcccccccccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCC
Q 045139           75 CCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTG  154 (820)
Q Consensus        75 ~c~w~gv~c~~~~~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~  154 (820)
                      .|.|.|| |+..          +   +.++ .+|+.+.  ++|++|++++|.+++. .|..++++++|++|+|++|.+++
T Consensus         3 ~C~~~~~-c~~~----------~---~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~   64 (549)
T 2z81_A            3 SCDASGV-CDGR----------S---RSFT-SIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINT   64 (549)
T ss_dssp             EECTTSE-EECT----------T---SCCS-SCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCE
T ss_pred             cCCCCce-EECC----------C---Cccc-cccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCc
Confidence            4899998 8532          2   3333 4666554  7899999999999875 67889999999999999999998


Q ss_pred             CCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCC-Ccc
Q 045139          155 RVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSV-IAS  233 (820)
Q Consensus       155 ~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~  233 (820)
                      ..|..|+++++|++|++++|                         .+.+  ..+..++++++|++|++++|.+++. .| 
T Consensus        65 ~~~~~~~~l~~L~~L~Ls~n-------------------------~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-  116 (549)
T 2z81_A           65 IEGDAFYSLGSLEHLDLSDN-------------------------HLSS--LSSSWFGPLSSLKYLNLMGNPYQTLGVT-  116 (549)
T ss_dssp             ECTTTTTTCTTCCEEECTTS-------------------------CCCS--CCHHHHTTCTTCCEEECTTCCCSSSCSS-
T ss_pred             cChhhccccccCCEEECCCC-------------------------ccCc--cCHHHhccCCCCcEEECCCCcccccchh-
Confidence            77788888999999988888                         2332  1234567777777777777777653 23 


Q ss_pred             ccccccCCcCCccEEECcCCCCCCchhh-hhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhh
Q 045139          234 SSVSFSNSSRSLAHLDLSLNDVSNSVYY-WLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSF  312 (820)
Q Consensus       234 ~~~~l~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l  312 (820)
                        ..+.++ ++|++|++++|.+.+.+|. .+.... +|++|++++|.+++.+|.. ++.+++|++|++++|.+..+|..+
T Consensus       117 --~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~  191 (549)
T 2z81_A          117 --SLFPNL-TNLQTLRIGNVETFSEIRRIDFAGLT-SLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLSESAFLLEIF  191 (549)
T ss_dssp             --CSCTTC-TTCCEEEEEESSSCCEECTTTTTTCC-EEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSBSTTHHHHH
T ss_pred             --hhhhcc-CCccEEECCCCccccccCHhhhhccc-ccCeeeccCCcccccChhh-hhccccCceEecccCcccccchhh
Confidence              344455 6666666666664444543 333333 6666777766666555555 666666666666666666555543


Q ss_pred             -hccCCCcEEEcCCCCCCC
Q 045139          313 -RNLCRLRALYQDSNNLTD  330 (820)
Q Consensus       313 -~~l~~L~~L~L~~n~l~~  330 (820)
                       ..+++|++|++++|++++
T Consensus       192 ~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          192 ADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             HHSTTTBSEEEEESCBCTT
T ss_pred             HhhcccccEEEccCCcccc
Confidence             345555555555555544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=4.9e-46  Score=429.00  Aligned_cols=477  Identities=18%  Similarity=0.191  Sum_probs=341.4

Q ss_pred             CCccEEECcCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcc-hhhhccCCCcEE
Q 045139          243 RSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVP-KSFRNLCRLRAL  321 (820)
Q Consensus       243 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip-~~l~~l~~L~~L  321 (820)
                      +...+.+.+++.++ .+|..+.   ++|++|++++|.+++..|.. |+++++|++|++++|+++.++ ..|.++++|++|
T Consensus         5 ~~~~~c~~~~~~l~-~ip~~~~---~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   79 (549)
T 2z81_A            5 DASGVCDGRSRSFT-SIPSGLT---AAMKSLDLSFNKITYIGHGD-LRACANLQVLILKSSRINTIEGDAFYSLGSLEHL   79 (549)
T ss_dssp             CTTSEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCCEECSST-TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCceEECCCCccc-cccccCC---CCccEEECcCCccCccChhh-hhcCCcccEEECCCCCcCccChhhccccccCCEE
Confidence            33445677778777 5666543   48899999999888544544 888899999999999888665 568888889999


Q ss_pred             EcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCccc-CCC-CcCcCCCcEEecCCCcccEEEccCCcccccc-cccc
Q 045139          322 YQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGS-LPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTL-TKSI  398 (820)
Q Consensus       322 ~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~-~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~-~~~l  398 (820)
                      ++++|++++..|..|..++     +|++|++++|.+++. .|. ++.+++|++|+++          +|.+.+.+ +..+
T Consensus        80 ~Ls~n~l~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~----------~n~~~~~~~~~~~  144 (549)
T 2z81_A           80 DLSDNHLSSLSSSWFGPLS-----SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG----------NVETFSEIRRIDF  144 (549)
T ss_dssp             ECTTSCCCSCCHHHHTTCT-----TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEE----------ESSSCCEECTTTT
T ss_pred             ECCCCccCccCHHHhccCC-----CCcEEECCCCcccccchhhhhhccCCccEEECC----------CCccccccCHhhh
Confidence            9999998888888888887     888888888888753 333 6677777765443          44422233 3466


Q ss_pred             cCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchh-hhcCCCc
Q 045139          399 GQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKW-LQTQNKF  477 (820)
Q Consensus       399 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L  477 (820)
                      .++++|++|++++|.+++.+|. .++.+++|++|++++|.+.                         .+|.+ +..+++|
T Consensus       145 ~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~-------------------------~~~~~~~~~l~~L  198 (549)
T 2z81_A          145 AGLTSLNELEIKALSLRNYQSQ-SLKSIRDIHHLTLHLSESA-------------------------FLLEIFADILSSV  198 (549)
T ss_dssp             TTCCEEEEEEEEETTCCEECTT-TTTTCSEEEEEEEECSBST-------------------------THHHHHHHSTTTB
T ss_pred             hcccccCeeeccCCcccccChh-hhhccccCceEecccCccc-------------------------ccchhhHhhcccc
Confidence            7777777777777777765555 5667777777777776653                         22222 2335555


Q ss_pred             cEEecCCCCccCCC--CchhhccCCCcEEEEcCCCcCCCCCCcc----cccccCCCCceeccCCcCcCC---------CC
Q 045139          478 SELDVSAAEISDTV--PNWFWDLSPNLYYLNLSHNHFTGMLPDL----SQKFTAYPPEIDLSANSFEGP---------IP  542 (820)
Q Consensus       478 ~~L~l~~n~i~~~~--p~~~~~~~~~L~~L~ls~n~l~~~~p~~----~~~~~~l~~~l~ls~n~~~~~---------~p  542 (820)
                      ++|++++|.+++..  |..+....++|+.|++++|.+++..+..    ......+ +.+++++|.+.+.         .+
T Consensus       199 ~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L-~~l~l~~~~~~~~~~~~~~~~~~~  277 (549)
T 2z81_A          199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL-SEVEFDDCTLNGLGDFNPSESDVV  277 (549)
T ss_dssp             SEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC-CEEEEESCEEECCSCCCCCTTTCC
T ss_pred             cEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc-cccccccccccccccccccchhhh
Confidence            55555555555431  2222223345555555555554432221    1222333 5555555555442         12


Q ss_pred             CCCCcceEEeccCcccccccc-----hhhccccccccEEEccCCccccccCccc-ccCCCCcEEEcCCCeeeecCC---C
Q 045139          543 PIPLTVTSLILFKNMFSGSLS-----FLCQISDEHFRYLDLSDNLLSGELPNCS-KNWQKLTVLNLANNKFSGKIP---D  613 (820)
Q Consensus       543 ~~~~~l~~l~l~~n~~~~~~~-----~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p---~  613 (820)
                      ...++++.+.+.++.+.....     ..... ..+++.|++++|+++ .+|..+ ..+++|++|++++|++++.+|   .
T Consensus       278 ~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~-~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  355 (549)
T 2z81_A          278 SELGKVETVTIRRLHIPQFYLFYDLSTVYSL-LEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA  355 (549)
T ss_dssp             CCCTTCCEEEEESCBCSCGGGSCCCCHHHHH-STTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHT
T ss_pred             hhhcccccccccccccchhhhcccchhhhhh-cccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchh
Confidence            345567777777665543221     10111 127999999999997 677666 579999999999999998764   4


Q ss_pred             CcccccCCcEEeccCCcccccCC--cchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCC
Q 045139          614 SMDFNCMMLSLHLRNNSFIGELP--SSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHL  691 (820)
Q Consensus       614 ~l~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l  691 (820)
                      .++.+++|++|++++|++++..+  ..+..+++|++|++++|+++ .+|..+. .+++|++|++++|+++ .+|..+  .
T Consensus       356 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~~~~L~~L~Ls~N~l~-~l~~~~--~  430 (549)
T 2z81_A          356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ-WPEKMRFLNLSSTGIR-VVKTCI--P  430 (549)
T ss_dssp             CTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCC-CCTTCCEEECTTSCCS-CCCTTS--C
T ss_pred             hhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhc-ccccccEEECCCCCcc-cccchh--c
Confidence            57889999999999999986543  56889999999999999998 7888887 7899999999999998 455444  3


Q ss_pred             CCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCee
Q 045139          692 QRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYG  771 (820)
Q Consensus       692 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~  771 (820)
                      ++|++||+++|++++.+    .+++.|                                         ++|||++|+++ 
T Consensus       431 ~~L~~L~Ls~N~l~~~~----~~l~~L-----------------------------------------~~L~Ls~N~l~-  464 (549)
T 2z81_A          431 QTLEVLDVSNNNLDSFS----LFLPRL-----------------------------------------QELYISRNKLK-  464 (549)
T ss_dssp             TTCSEEECCSSCCSCCC----CCCTTC-----------------------------------------CEEECCSSCCS-
T ss_pred             CCceEEECCCCChhhhc----ccCChh-----------------------------------------cEEECCCCccC-
Confidence            68999999999998643    344444                                         89999999998 


Q ss_pred             cCCCcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCcCccc
Q 045139          772 EIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLMRA  819 (820)
Q Consensus       772 ~ip~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~g~  819 (820)
                      .||..+.+++|++|+|++|++++.+|..|+.+++|++||+++|+++|.
T Consensus       465 ~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  512 (549)
T 2z81_A          465 TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  512 (549)
T ss_dssp             SCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred             cCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence            889777899999999999999999999999999999999999999885

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.4e-43  Score=414.39  Aligned_cols=519  Identities=19%  Similarity=0.170  Sum_probs=347.3

Q ss_pred             CCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCee
Q 045139          115 QHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYV  194 (820)
Q Consensus       115 ~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L  194 (820)
                      +.+++|||++|++++. .|..|+++++|++|+|++|+|++..|.+|+++++|++|+|++|                    
T Consensus        52 ~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N--------------------  110 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN--------------------  110 (635)
T ss_dssp             TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC--------------------
T ss_pred             cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC--------------------
Confidence            3577777777777663 3456777777777777777777555555666666666666555                    


Q ss_pred             eCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEEE
Q 045139          195 RLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLD  274 (820)
Q Consensus       195 ~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~  274 (820)
                                                     ++++..+                            ..+..+ ++|++|+
T Consensus       111 -------------------------------~l~~l~~----------------------------~~f~~L-~~L~~L~  130 (635)
T 4g8a_A          111 -------------------------------PIQSLAL----------------------------GAFSGL-SSLQKLV  130 (635)
T ss_dssp             -------------------------------CCCEECG----------------------------GGGTTC-TTCCEEE
T ss_pred             -------------------------------cCCCCCH----------------------------HHhcCC-CCCCEEE
Confidence                                           2222211                            111222 2677777


Q ss_pred             ccCCcccCCCCCCCCCCCCCCCEEECCCCCCC--CcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEc
Q 045139          275 LSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLV--SVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQL  352 (820)
Q Consensus       275 Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~--~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L  352 (820)
                      +++|+++ .+|..+|+++++|++|++++|+++  .+|..++.+++|++|++++|++++..+..|..+.... .....+++
T Consensus       131 Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~-~~~~~~~l  208 (635)
T 4g8a_A          131 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP-LLNLSLDL  208 (635)
T ss_dssp             CTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT-TCCCEEEC
T ss_pred             CCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhh-hhhhhhhc
Confidence            7777777 456555888888888888888887  4567788899999999999999988888877665211 13346777


Q ss_pred             CCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccc-cccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCE
Q 045139          353 NSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTG-TLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTY  431 (820)
Q Consensus       353 ~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~  431 (820)
                      +.|.+....+.......++.+          ++.+|.... ..+..+..+..++...+..+.....              
T Consensus       209 s~n~l~~i~~~~~~~~~~~~l----------~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~--------------  264 (635)
T 4g8a_A          209 SLNPMNFIQPGAFKEIRLHKL----------TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE--------------  264 (635)
T ss_dssp             TTCCCCEECTTTTTTCEEEEE----------EEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTS--------------
T ss_pred             ccCcccccCcccccchhhhhh----------hhhcccccccccchhhcCCcccccccccccccccc--------------
Confidence            777776554443322233333          222332221 1223344444444444332221110              


Q ss_pred             EeCcCCccccccCCCCcCccccceeecccccCC---CCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcC
Q 045139          432 LDLSHNSLILNFGSGWVPSFELNIIRLGACKQG---PQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLS  508 (820)
Q Consensus       432 L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls  508 (820)
                           ..+.......+.....+....+..+...   ...+..+....+++.+++.++.+....+..   ....++.|++.
T Consensus       265 -----~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~~~L~~L~l~  336 (635)
T 4g8a_A          265 -----GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFS---YNFGWQHLELV  336 (635)
T ss_dssp             -----CCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGG---SCCCCSEEEEE
T ss_pred             -----cccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccc---cchhhhhhhcc
Confidence                 0000001111111122222222221111   122334555666777777777665433221   12467777777


Q ss_pred             CCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccc--cc
Q 045139          509 HNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLS--GE  586 (820)
Q Consensus       509 ~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~--~~  586 (820)
                      +|.+.+..+..   +..+ +.+++..|......+                     ..   ...+++.+++++|.+.  +.
T Consensus       337 ~~~~~~~~~~~---l~~L-~~l~l~~n~~~~~~~---------------------~~---~l~~L~~L~ls~n~l~~~~~  388 (635)
T 4g8a_A          337 NCKFGQFPTLK---LKSL-KRLTFTSNKGGNAFS---------------------EV---DLPSLEFLDLSRNGLSFKGC  388 (635)
T ss_dssp             SCEESSCCCCB---CTTC-CEEEEESCCSCCBCC---------------------CC---BCTTCCEEECCSSCCBEEEE
T ss_pred             cccccCcCccc---chhh-hhcccccccCCCCcc---------------------cc---cccccccchhhccccccccc
Confidence            77665544331   2223 455555554433221                     10   1117899999999875  34


Q ss_pred             cCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCC-cchhcCCCCCEEECCCCcCccccCcchhc
Q 045139          587 LPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELP-SSVKSFTQLTVLDLGHNKISGIIPAWIGD  665 (820)
Q Consensus       587 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  665 (820)
                      .+..+..+.+|++++++.|.+.. .+..+..+++|+.++++.|......+ ..+..+++++.+++++|.+.+..|..+. 
T Consensus       389 ~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~-  466 (635)
T 4g8a_A          389 CSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-  466 (635)
T ss_dssp             CCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT-
T ss_pred             cccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccc-
Confidence            56777888999999999999885 56678889999999999998876654 5678899999999999999988887776 


Q ss_pred             CCCCccEEEcCcccc-cccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEE
Q 045139          666 SLPDLVVLSLRSNNF-HGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLV  744 (820)
Q Consensus       666 ~l~~L~~L~L~~N~l-~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  744 (820)
                      .+++|++|++++|++ .+..|..+..+++|++|||++|++++..|..|.++++|                          
T Consensus       467 ~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L--------------------------  520 (635)
T 4g8a_A          467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL--------------------------  520 (635)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC--------------------------
T ss_pred             cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC--------------------------
Confidence            799999999999985 45678899999999999999999999899999998888                          


Q ss_pred             eeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCC-CCCCeEeCCCCcCccc
Q 045139          745 WKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGL-TLLNSLDLSKNMLMRA  819 (820)
Q Consensus       745 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l-~~L~~LdLs~N~l~g~  819 (820)
                                     ++|+|++|+|++.+| .+..+++|++|+|++|+|++.+|+.|..+ ++|++|||++|++++.
T Consensus       521 ---------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          521 ---------------QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             ---------------CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             ---------------CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence                           899999999998878 89999999999999999999999999988 6899999999999873

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=9.4e-45  Score=415.16  Aligned_cols=449  Identities=20%  Similarity=0.216  Sum_probs=356.3

Q ss_pred             cEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcc-hhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccE
Q 045139          271 VYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVP-KSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEI  349 (820)
Q Consensus       271 ~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~  349 (820)
                      ++|++++|.++ .+|.. +.  ++|++|++++|+++.++ ..|.++++|++|++++|++++..|..|..++     +|++
T Consensus         3 ~~l~ls~n~l~-~ip~~-~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~   73 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKD-LS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ-----ELEY   73 (520)
T ss_dssp             CEEECTTSCCS-SCCCS-CC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCT-----TCCE
T ss_pred             ceEecCCCCcc-ccccc-cc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhccc-----CCCE
Confidence            58999999999 79987 44  89999999999999776 5799999999999999999999999999998     9999


Q ss_pred             EEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccc-cccccccCCCCCCEEecCCCcCccccCHHHhhcCCC
Q 045139          350 LQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTG-TLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSR  428 (820)
Q Consensus       350 L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~  428 (820)
                      |++++|++++ +|.. .+++|++|+          +++|.+++ .+|..++++++|++|++++|.+++.    .+..+++
T Consensus        74 L~Ls~N~l~~-lp~~-~l~~L~~L~----------L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~  137 (520)
T 2z7x_B           74 LDLSHNKLVK-ISCH-PTVNLKHLD----------LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS----SVLPIAH  137 (520)
T ss_dssp             EECCSSCCCE-EECC-CCCCCSEEE----------CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG----GGGGGTT
T ss_pred             EecCCCceee-cCcc-ccCCccEEe----------ccCCccccccchhhhccCCcceEEEecCcccchh----hcccccc
Confidence            9999999984 5554 677888665          45666665 4688999999999999999999862    5778888


Q ss_pred             C--CEEeCcCCcc--ccccCCCCcCcc-ccceeecccccCCCCCch-hhhcCCCccEEecCCCC-------ccCCCCchh
Q 045139          429 L--TYLDLSHNSL--ILNFGSGWVPSF-ELNIIRLGACKQGPQFPK-WLQTQNKFSELDVSAAE-------ISDTVPNWF  495 (820)
Q Consensus       429 L--~~L~Ls~n~l--~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~n~-------i~~~~p~~~  495 (820)
                      |  ++|++++|.+  .+..|..+.... ....+++++|.+.+.++. .+..+++|+.+++++|.       +.+.+| .+
T Consensus       138 L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l  216 (520)
T 2z7x_B          138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KL  216 (520)
T ss_dssp             SCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GG
T ss_pred             ceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hh
Confidence            8  9999999998  666666665544 334556777776655543 56678888888888886       555555 34


Q ss_pred             hccCCCcEEEEcCCCcCCCCCCcccc---cccCCCCceeccCCcCcCCCCCCC-----CcceEEeccCcccccccchhhc
Q 045139          496 WDLSPNLYYLNLSHNHFTGMLPDLSQ---KFTAYPPEIDLSANSFEGPIPPIP-----LTVTSLILFKNMFSGSLSFLCQ  567 (820)
Q Consensus       496 ~~~~~~L~~L~ls~n~l~~~~p~~~~---~~~~l~~~l~ls~n~~~~~~p~~~-----~~l~~l~l~~n~~~~~~~~~~~  567 (820)
                      .. .++|+.|++++|.+++..+....   ..+.+ +.+++++|+++|.+|..+     ..++                  
T Consensus       217 ~~-l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L-~~L~l~~n~l~~~~p~~~~~~~~~~l~------------------  276 (520)
T 2z7x_B          217 QT-NPKLSNLTLNNIETTWNSFIRILQLVWHTTV-WYFSISNVKLQGQLDFRDFDYSGTSLK------------------  276 (520)
T ss_dssp             GG-CTTCCEEEEEEEEEEHHHHHHHHHHHHTSSC-SEEEEEEEEEESCCCCCCCCCCSCCCC------------------
T ss_pred             cc-ccchhhccccccccCHHHHHHHHHHhhhCcc-cEEEeecccccCccccchhhcccccCc------------------
Confidence            44 36788888888877653222111   12244 778888888877777665     3333                  


Q ss_pred             cccccccEEEccCCccccccC-cccccC---CCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCC
Q 045139          568 ISDEHFRYLDLSDNLLSGELP-NCSKNW---QKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFT  643 (820)
Q Consensus       568 ~~~~~L~~L~Ls~n~l~~~~p-~~~~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  643 (820)
                          .|+.+++++|.+  .+| ..+..+   .+|+.|++++|.+.+..  .+..+++|++|++++|++++.+|..+..++
T Consensus       277 ----~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  348 (520)
T 2z7x_B          277 ----ALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLT  348 (520)
T ss_dssp             ----EEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCS
T ss_pred             ----eeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCC
Confidence                788888988888  455 455544   67999999999886432  126788999999999999988899999999


Q ss_pred             CCCEEECCCCcCcc--ccCcchhcCCCCccEEEcCcccccccCCcc-cCCCCCCCEEeCcCCCCccccchhccccccccc
Q 045139          644 QLTVLDLGHNKISG--IIPAWIGDSLPDLVVLSLRSNNFHGRVPVQ-VCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTA  720 (820)
Q Consensus       644 ~L~~L~Ls~N~l~~--~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  720 (820)
                      +|++|++++|++++  .+|..+. .+++|++|++++|++++.+|.. +..+++|+.|++++|++++.+|..+.  +.|  
T Consensus       349 ~L~~L~L~~N~l~~l~~~~~~~~-~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L--  423 (520)
T 2z7x_B          349 ELETLILQMNQLKELSKIAEMTT-QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRI--  423 (520)
T ss_dssp             SCCEEECCSSCCCBHHHHHHHHT-TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTC--
T ss_pred             CCCEEEccCCccCccccchHHHh-hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccC--
Confidence            99999999999986  5667776 7999999999999999756654 78889999999999999887776654  344  


Q ss_pred             cccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCccc
Q 045139          721 NKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSK  799 (820)
Q Consensus       721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~  799 (820)
                                                             +.||+++|+++ .+| .+..+++|++|++++|+++ .+|..
T Consensus       424 ---------------------------------------~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~  462 (520)
T 2z7x_B          424 ---------------------------------------KVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDG  462 (520)
T ss_dssp             ---------------------------------------CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTT
T ss_pred             ---------------------------------------CEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHH
Confidence                                                   89999999998 888 7889999999999999999 46665


Q ss_pred             -ccCCCCCCeEeCCCCcCccc
Q 045139          800 -IGGLTLLNSLDLSKNMLMRA  819 (820)
Q Consensus       800 -l~~l~~L~~LdLs~N~l~g~  819 (820)
                       |..+++|++||+++|+++|.
T Consensus       463 ~~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          463 IFDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             TTTTCTTCCEEECCSSCBCCC
T ss_pred             HhccCCcccEEECcCCCCccc
Confidence             89999999999999999875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3e-44  Score=424.79  Aligned_cols=444  Identities=18%  Similarity=0.215  Sum_probs=260.7

Q ss_pred             CCccEEECcCCCCCCchhhhhhccCCCCcEEEc-cCCcccCCCCCCCC--------------------------------
Q 045139          243 RSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDL-SSNKLQGPIPDSAF--------------------------------  289 (820)
Q Consensus       243 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L-s~n~l~g~ip~~~l--------------------------------  289 (820)
                      ..++.|+|+++.+.|.+|+.++++. +|++|+| ++|.++|..|....                                
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~-~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s  401 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLT-ELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS  401 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCT-TCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEECccCCCCCcCchHHhccc-cceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence            5688899999999999998888887 8999999 88877766442211                                


Q ss_pred             ------------------CCCCCCCEEECCC--CCCCCcchhhhccCCCcEEEcCCCCCCCc-----------------c
Q 045139          290 ------------------PNPTSLSYLDLSN--NQLVSVPKSFRNLCRLRALYQDSNNLTDL-----------------L  332 (820)
Q Consensus       290 ------------------~~l~~L~~L~Ls~--n~l~~ip~~l~~l~~L~~L~L~~n~l~~~-----------------~  332 (820)
                                        .....++.+.+..  |+++.||..|+++++|++|++++|++++.                 +
T Consensus       402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                              1111222233332  55555666677777777777777777662                 5


Q ss_pred             hhhhh--hcccCCcCCccEEEcCCCCCcccCCC-CcCcCCCcEEecCCCcccEEEccCCc-ccc-cccccccCCC-----
Q 045139          333 PNLFL--KLSNCSRDTLEILQLNSNMLRGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNR-FTG-TLTKSIGQLS-----  402 (820)
Q Consensus       333 ~~~~~--~l~~~~~~~L~~L~L~~n~l~~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~-l~~-~~~~~l~~l~-----  402 (820)
                      |..++  .++     +|+.|+|++|.+.+.+|. ++.+++|+.|+          +++|+ ++| .+|..++.++     
T Consensus       482 P~~l~f~~L~-----~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~----------Ls~N~~lsg~~iP~~i~~L~~~~~~  546 (876)
T 4ecn_A          482 NEELSWSNLK-----DLTDVELYNCPNMTQLPDFLYDLPELQSLN----------IACNRGISAAQLKADWTRLADDEDT  546 (876)
T ss_dssp             TSCCCGGGCT-----TCCEEEEESCTTCCSCCGGGGGCSSCCEEE----------CTTCTTSCHHHHHHHHHHHHHCTTT
T ss_pred             ChhhhhccCC-----CCCEEECcCCCCCccChHHHhCCCCCCEEE----------CcCCCCcccccchHHHHhhhhcccc
Confidence            55544  555     566666666666666665 56666665443          33444 454 4555444433     


Q ss_pred             --CCCEEecCCCcCccccCH-HHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCC-cc
Q 045139          403 --QLELLDVASNSLKGMITE-AHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNK-FS  478 (820)
Q Consensus       403 --~L~~L~L~~n~l~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~  478 (820)
                        +|+.|++++|.++ .+|. ..++++++|++|++++|.+. .+| .+..+.+|+.|++++|.+. .+|.++..+++ |+
T Consensus       547 l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~  622 (876)
T 4ecn_A          547 GPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVE  622 (876)
T ss_dssp             TTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCC
T ss_pred             cCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCC
Confidence              6666666666666 3443 24566666666666666655 344 4444444555555544444 44444444444 44


Q ss_pred             EEecCCCCccCCCCchhhccC-CCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcc
Q 045139          479 ELDVSAAEISDTVPNWFWDLS-PNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNM  557 (820)
Q Consensus       479 ~L~l~~n~i~~~~p~~~~~~~-~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~  557 (820)
                      .|++++|.++ .+|..+.... ++|+.|++++|++.+.+|.                         .+..+.        
T Consensus       623 ~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~-------------------------l~~~l~--------  668 (876)
T 4ecn_A          623 GLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN-------------------------ISCSMD--------  668 (876)
T ss_dssp             EEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSS-------------------------CSSCTT--------
T ss_pred             EEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcccc-------------------------chhhhc--------
Confidence            4444444444 3343332211 1244444444444443332                         111000        


Q ss_pred             cccccchhhccccccccEEEccCCccccccCccc-ccCCCCcEEEcCCCeeeecCCCCccc--------ccCCcEEeccC
Q 045139          558 FSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCS-KNWQKLTVLNLANNKFSGKIPDSMDF--------NCMMLSLHLRN  628 (820)
Q Consensus       558 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~~--------l~~L~~L~Ls~  628 (820)
                               .....+|+.|++++|+++ .+|..+ ..+++|+.|+|++|+++ .+|..+..        +++|++|+|++
T Consensus       669 ---------~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~  737 (876)
T 4ecn_A          669 ---------DYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRF  737 (876)
T ss_dssp             ---------TCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCS
T ss_pred             ---------cccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCC
Confidence                     000016788888888887 455544 47788888888888887 55554332        22677777777


Q ss_pred             CcccccCCcchh--cCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCcc
Q 045139          629 NSFIGELPSSVK--SFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISG  706 (820)
Q Consensus       629 N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  706 (820)
                      |+++ .+|..+.  .+++|+.|+|++|++++ +|..++ .+++|+.|+|++|+                  ++++|++.+
T Consensus       738 N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~-~L~~L~~L~Ls~N~------------------~ls~N~l~~  796 (876)
T 4ecn_A          738 NKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPL-NSSQLKAFGIRHQR------------------DAEGNRILR  796 (876)
T ss_dssp             SCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG-GCTTCCEEECCCCB------------------CTTCCBCCC
T ss_pred             CCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhh-cCCCCCEEECCCCC------------------Ccccccccc
Confidence            7776 5666665  67777777777777775 666666 57777777776644                  344566666


Q ss_pred             ccchhccccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEE
Q 045139          707 TVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISL  785 (820)
Q Consensus       707 ~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L  785 (820)
                      .+|..+.+++.|                                         +.|+|++|++ +.|| .+.  ++|+.|
T Consensus       797 ~ip~~l~~L~~L-----------------------------------------~~L~Ls~N~L-~~Ip~~l~--~~L~~L  832 (876)
T 4ecn_A          797 QWPTGITTCPSL-----------------------------------------IQLQIGSNDI-RKVDEKLT--PQLYIL  832 (876)
T ss_dssp             CCCTTGGGCSSC-----------------------------------------CEEECCSSCC-CBCCSCCC--SSSCEE
T ss_pred             cChHHHhcCCCC-----------------------------------------CEEECCCCCC-CccCHhhc--CCCCEE
Confidence            677666666665                                         6677777777 4666 544  467777


Q ss_pred             eCCCCccccCCcccccCCCCCCeEeCCCCcC
Q 045139          786 NLSKNSLTGPIPSKIGGLTLLNSLDLSKNML  816 (820)
Q Consensus       786 ~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l  816 (820)
                      ||++|++....+..+.....+..+.|++|++
T Consensus       833 dLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~  863 (876)
T 4ecn_A          833 DIADNPNISIDVTSVCPYIEAGMYVLLYDKT  863 (876)
T ss_dssp             ECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred             ECCCCCCCccChHHccccccchheeecCCCc
Confidence            7777776655555555444555566666554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.9e-44  Score=411.09  Aligned_cols=459  Identities=20%  Similarity=0.225  Sum_probs=333.6

Q ss_pred             CeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCc
Q 045139          192 EYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLV  271 (820)
Q Consensus       192 ~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~  271 (820)
                      +++++++|.++..   |..+.  ++|++|++++|.+++..|   ..+.++ ++|++|++++|.+++..|..+..+. +|+
T Consensus         3 ~~l~ls~n~l~~i---p~~~~--~~L~~L~Ls~n~i~~~~~---~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~   72 (520)
T 2z7x_B            3 FLVDRSKNGLIHV---PKDLS--QKTTILNISQNYISELWT---SDILSL-SKLRILIISHNRIQYLDISVFKFNQ-ELE   72 (520)
T ss_dssp             CEEECTTSCCSSC---CCSCC--TTCSEEECCSSCCCCCCH---HHHTTC-TTCCEEECCSSCCCEEEGGGGTTCT-TCC
T ss_pred             ceEecCCCCcccc---ccccc--ccccEEECCCCcccccCh---hhcccc-ccccEEecCCCccCCcChHHhhccc-CCC
Confidence            5788888888763   33343  788888888888888776   556666 8888888888888877777776666 888


Q ss_pred             EEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCC--cchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCc--
Q 045139          272 YLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVS--VPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTL--  347 (820)
Q Consensus       272 ~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~--ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L--  347 (820)
                      +|++++|+++ .+|..   .+++|++|++++|+++.  +|..|+++++|++|++++|++++   ..+..++     +|  
T Consensus        73 ~L~Ls~N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~-----~L~L  140 (520)
T 2z7x_B           73 YLDLSHNKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIA-----HLNI  140 (520)
T ss_dssp             EEECCSSCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGT-----TSCE
T ss_pred             EEecCCCcee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccc-----ccee
Confidence            8888888888 67764   78888888888888884  56788888888888888888876   3455555     56  


Q ss_pred             cEEEcCCCCC--cccCCC-CcCcCCCcEEecCCCcccEEEccCCcccccccc-cccCCCCCCEEecCCCc-------Ccc
Q 045139          348 EILQLNSNML--RGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTK-SIGQLSQLELLDVASNS-------LKG  416 (820)
Q Consensus       348 ~~L~L~~n~l--~~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~-------l~~  416 (820)
                      +.|++++|.+  .+..|. +..+.. +.+        .+++++|.+.+.++. .+..+++|+.+++++|.       +.+
T Consensus       141 ~~L~l~~n~l~~~~~~~~~l~~l~~-~~l--------~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  211 (520)
T 2z7x_B          141 SKVLLVLGETYGEKEDPEGLQDFNT-ESL--------HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS  211 (520)
T ss_dssp             EEEEEEECTTTTSSCCTTTTTTCCE-EEE--------EEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHH
T ss_pred             eEEEeeccccccccccccccccccc-ceE--------EEEeccCcchhhhhhhhhhcccceeeccccccccccccceeec
Confidence            8888888888  666555 444432 233        346666766655443 56677888888888876       555


Q ss_pred             ccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhh
Q 045139          417 MITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFW  496 (820)
Q Consensus       417 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~  496 (820)
                      .++  .++.+++|+.|++++|.+.+.....                    ++.+. ..++|++|++++|.+++.+|.+++
T Consensus       212 ~~~--~l~~l~~L~~L~l~~~~l~~~~~~~--------------------~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~  268 (520)
T 2z7x_B          212 ILA--KLQTNPKLSNLTLNNIETTWNSFIR--------------------ILQLV-WHTTVWYFSISNVKLQGQLDFRDF  268 (520)
T ss_dssp             HHH--GGGGCTTCCEEEEEEEEEEHHHHHH--------------------HHHHH-HTSSCSEEEEEEEEEESCCCCCCC
T ss_pred             chh--hhccccchhhccccccccCHHHHHH--------------------HHHHh-hhCcccEEEeecccccCccccchh
Confidence            444  4777778888888777664321111                    01111 134666677777666666666552


Q ss_pred             ----ccCCCcEEEEcCCCcCCCCCC-cccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccc
Q 045139          497 ----DLSPNLYYLNLSHNHFTGMLP-DLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDE  571 (820)
Q Consensus       497 ----~~~~~L~~L~ls~n~l~~~~p-~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~  571 (820)
                          ..+++|+.+++++|.+  .+| ..+...                                          .  ...
T Consensus       269 ~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~------------------------------------------~--~~~  302 (520)
T 2z7x_B          269 DYSGTSLKALSIHQVVSDVF--GFPQSYIYEI------------------------------------------F--SNM  302 (520)
T ss_dssp             CCCSCCCCEEEEEEEEECCC--CSCTHHHHHH------------------------------------------H--HTC
T ss_pred             hcccccCceeEeccccccce--ecchhhhhcc------------------------------------------c--ccC
Confidence                2235666666666655  233 111100                                          0  001


Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccc--cCCcchhcCCCCCEEE
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIG--ELPSSVKSFTQLTVLD  649 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~  649 (820)
                      +++.|++++|.+.+..  ....+++|++|++++|++++.+|..++.+++|++|++++|++++  .+|..+..+++|++|+
T Consensus       303 ~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~  380 (520)
T 2z7x_B          303 NIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD  380 (520)
T ss_dssp             CCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEE
T ss_pred             ceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEE
Confidence            5788888888776432  12678889999999999988888888999999999999999986  5667888999999999


Q ss_pred             CCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccc
Q 045139          650 LGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIR  729 (820)
Q Consensus       650 Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~  729 (820)
                      +++|++++.+|......+++|++|++++|++++.+|..+.  ++|+.|++++|+++ .+|..+.+++.|           
T Consensus       381 Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L-----------  446 (520)
T 2z7x_B          381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEAL-----------  446 (520)
T ss_dssp             CCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTC-----------
T ss_pred             CCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCC-----------
Confidence            9999998768866434788999999999999888887764  78999999999998 788877777777           


Q ss_pred             cCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-C-cccccCCCEEeCCCCccccCCc
Q 045139          730 YPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-E-VTSLVGLISLNLSKNSLTGPIP  797 (820)
Q Consensus       730 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~-l~~l~~L~~L~Ls~N~l~~~ip  797 (820)
                                                    +.||+++|+++ .+| . +..+++|++|++++|.+++..+
T Consensus       447 ------------------------------~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          447 ------------------------------QELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             ------------------------------CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ------------------------------CEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence                                          88999999998 667 4 8889999999999999987544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.8e-45  Score=425.47  Aligned_cols=465  Identities=18%  Similarity=0.174  Sum_probs=345.3

Q ss_pred             CccEEECcCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEc
Q 045139          244 SLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQ  323 (820)
Q Consensus       244 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L  323 (820)
                      .++.|+|+++.+.|.+|+.++++. +|++|+|++|.+.. .+.. ++... .         -..+|...  +..|+ +++
T Consensus        82 ~V~~L~L~~~~l~g~lp~~l~~L~-~L~~L~Ls~N~~~~-~~~~-~~~~~-~---------~~~~~~~~--~~~l~-l~l  145 (636)
T 4eco_A           82 RVTGLSLEGFGASGRVPDAIGQLT-ELEVLALGSHGEKV-NERL-FGPKG-I---------SANMSDEQ--KQKMR-MHY  145 (636)
T ss_dssp             CEEEEECTTSCCEEEECGGGGGCT-TCCEEESCCGGGGG-TCCS-BSTTS-B---------CTTCCHHH--HHHHH-THH
T ss_pred             CEEEEEecCcccCCcCChHHhcCc-cceEEECcCCcccc-CCcc-ccccc-c---------ccCchHHH--HHHHH-hhH
Confidence            455555555555555555555544 55555555554420 0000 11000 0         01344443  44556 777


Q ss_pred             CCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCC
Q 045139          324 DSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQ  403 (820)
Q Consensus       324 ~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~  403 (820)
                      +.|.+.+.+|..+..+..    .+..+++....+..     .....++.+.+        ....|+++| +|..++++++
T Consensus       146 ~~~~l~~~~~~~~~~~~~----~l~~~~l~~~~~~~-----~~~~~l~~l~l--------~~~~n~l~~-ip~~l~~l~~  207 (636)
T 4eco_A          146 QKTFVDYDPREDFSDLIK----DCINSDPQQKSIKK-----SSRITLKDTQI--------GQLSNNITF-VSKAVMRLTK  207 (636)
T ss_dssp             HHHHTCCCGGGGSCHHHH----HHHHHCTTSCCCCC-----CCCCCCCTTTT--------TCCSCEEEE-ECGGGGGCTT
T ss_pred             HHhhhccCchhhHHHHHH----HHhhcCcccccccc-----ccccchhhhhh--------ccccCCCcc-CCHHHhcccC
Confidence            777777777766553221    23333333322221     11112222211        223577887 8888888888


Q ss_pred             CCEEecCCCcCccc-----------------cCHHHhh--cCCCCCEEeCcCCccccccCCCCcCccccceeeccccc-C
Q 045139          404 LELLDVASNSLKGM-----------------ITEAHLS--NLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACK-Q  463 (820)
Q Consensus       404 L~~L~L~~n~l~~~-----------------~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~-~  463 (820)
                      |++|++++|.+++.                 +|. .++  ++++|++|++++|.+.+.+|..+..+.+|+.|++++|. +
T Consensus       208 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l  286 (636)
T 4eco_A          208 LRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI  286 (636)
T ss_dssp             CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS
T ss_pred             CCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC
Confidence            99999988888884                 665 566  88888888888888888888778778888888888887 7


Q ss_pred             CC-CCchhhhcC------CCccEEecCCCCccCCCCc--hhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccC
Q 045139          464 GP-QFPKWLQTQ------NKFSELDVSAAEISDTVPN--WFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSA  534 (820)
Q Consensus       464 ~~-~~~~~l~~~------~~L~~L~l~~n~i~~~~p~--~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~  534 (820)
                      .+ .+|..+..+      ++|++|++++|+++ .+|.  .+..+ ++|++|++++|+++|.+| .+..++.+ +.|++++
T Consensus       287 ~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l-~~L~~L~L~~N~l~g~ip-~~~~l~~L-~~L~L~~  362 (636)
T 4eco_A          287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKM-KKLGMLECLYNQLEGKLP-AFGSEIKL-ASLNLAY  362 (636)
T ss_dssp             CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTC-TTCCEEECCSCCCEEECC-CCEEEEEE-SEEECCS
T ss_pred             ccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccC-CCCCEEeCcCCcCccchh-hhCCCCCC-CEEECCC
Confidence            76 778777765      88888888888888 7777  66554 688888888888888888 56666777 8888888


Q ss_pred             CcCcCCCCCCCCcceEEeccCcccccccchhhcccccc-ccEEEccCCccccccCcccccCC--CCcEEEcCCCeeeecC
Q 045139          535 NSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEH-FRYLDLSDNLLSGELPNCSKNWQ--KLTVLNLANNKFSGKI  611 (820)
Q Consensus       535 n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~  611 (820)
                      |+++ .+|..+..+.                      + |++|++++|.++ .+|..+..++  +|++|++++|++++.+
T Consensus       363 N~l~-~lp~~l~~l~----------------------~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~  418 (636)
T 4eco_A          363 NQIT-EIPANFCGFT----------------------EQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVD  418 (636)
T ss_dssp             SEEE-ECCTTSEEEC----------------------TTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTT
T ss_pred             Cccc-cccHhhhhhc----------------------ccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcc
Confidence            8877 6665544443                      6 999999999999 7888887765  8999999999999999


Q ss_pred             CCCcc-------cccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCC-------CccEEEcCc
Q 045139          612 PDSMD-------FNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLP-------DLVVLSLRS  677 (820)
Q Consensus       612 p~~l~-------~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~-------~L~~L~L~~  677 (820)
                      |..+.       .+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..++....       +|++|+|++
T Consensus       419 p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~  497 (636)
T 4eco_A          419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRF  497 (636)
T ss_dssp             TCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCS
T ss_pred             hhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcC
Confidence            99988       8889999999999999544445667999999999999999 78876553333       899999999


Q ss_pred             ccccccCCcccC--CCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeeccccccccc
Q 045139          678 NNFHGRVPVQVC--HLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNT  755 (820)
Q Consensus       678 N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  755 (820)
                      |+++ .+|..+.  .+++|+.|++++|++++ +|..+.+++.|                                     
T Consensus       498 N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L-------------------------------------  538 (636)
T 4eco_A          498 NKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL-------------------------------------  538 (636)
T ss_dssp             SCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSC-------------------------------------
T ss_pred             CcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCC-------------------------------------
Confidence            9999 7888887  99999999999999997 89999888887                                     


Q ss_pred             cCceEEEEC------CCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCcCcc
Q 045139          756 LGLVKSIDL------SSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLMR  818 (820)
Q Consensus       756 l~~L~~LdL------s~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~g  818 (820)
                          +.|+|      ++|++.+.+| .++.+++|++|+|++|++ +.+|..+.  ++|++||+++|++..
T Consensus       539 ----~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          539 ----KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             ----CEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred             ----CEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence                78888      6788999999 999999999999999999 68998876  899999999998763

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.4e-42  Score=398.48  Aligned_cols=459  Identities=22%  Similarity=0.269  Sum_probs=257.4

Q ss_pred             CEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCE
Q 045139          218 TELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSY  297 (820)
Q Consensus       218 ~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~  297 (820)
                      +++++++|.+++.+.    .+   .++|++|++++|.+++..+..+.... +|++|++++|.+++..|.. |+++++|++
T Consensus        34 ~~l~ls~~~L~~ip~----~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~  104 (562)
T 3a79_B           34 SMVDYSNRNLTHVPK----DL---PPRTKALSLSQNSISELRMPDISFLS-ELRVLRLSHNRIRSLDFHV-FLFNQDLEY  104 (562)
T ss_dssp             CEEECTTSCCCSCCT----TS---CTTCCEEECCSSCCCCCCGGGTTTCT-TCCEEECCSCCCCEECTTT-TTTCTTCCE
T ss_pred             cEEEcCCCCCccCCC----CC---CCCcCEEECCCCCccccChhhhccCC-CccEEECCCCCCCcCCHHH-hCCCCCCCE
Confidence            555555555554222    11   14555666666665544444444444 5666666666665322332 566666666


Q ss_pred             EECCCCCCCCcchhhhccCCCcEEEcCCCCCCCc-chhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcCCC--cEEe
Q 045139          298 LDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDL-LPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSL--KELH  374 (820)
Q Consensus       298 L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~L--~~L~  374 (820)
                      |++++|+++.+|..  .+++|++|++++|++++. .|..|.+++     +|++|++++|.+.+.  .+..+++|  ++  
T Consensus       105 L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~-----~L~~L~L~~n~l~~~--~~~~l~~L~L~~--  173 (562)
T 3a79_B          105 LDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLT-----KLTFLGLSAAKFRQL--DLLPVAHLHLSC--  173 (562)
T ss_dssp             EECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCT-----TCCEEEEECSBCCTT--TTGGGTTSCEEE--
T ss_pred             EECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccC-----cccEEecCCCccccC--chhhhhhceeeE--
Confidence            66666666655554  556666666666666553 345555555     566666666665531  23333333  33  


Q ss_pred             cCCCcccEEEccCCcc--cccccccccCCC--CCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCc
Q 045139          375 LYDNMLDVLYLNNNRF--TGTLTKSIGQLS--QLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPS  450 (820)
Q Consensus       375 l~~n~L~~L~L~~n~l--~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~  450 (820)
                              |++++|.+  ++..|..+..+.  .+ .+++++|.+.+.++...+..+++|+.+++++|.....        
T Consensus       174 --------L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--------  236 (562)
T 3a79_B          174 --------ILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ--------  236 (562)
T ss_dssp             --------EEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH--------
T ss_pred             --------EEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccc--------
Confidence                    33444444  444555554433  22 3455566655555544455555666666665532100        


Q ss_pred             cccceeecccccCCCCCchhhhcCCCccEEecCCCCccCC----CCchhhccCCCcEEEEcCCCcCCCCCCcccccccCC
Q 045139          451 FELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDT----VPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAY  526 (820)
Q Consensus       451 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~----~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l  526 (820)
                                  .....+..+..+++++.+++.++.+.+.    ++..++  .++|++|++++|.++|.+|..+....  
T Consensus       237 ------------~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~ip~~~~~~~--  300 (562)
T 3a79_B          237 ------------RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW--PRPVEYLNIYNLTITERIDREEFTYS--  300 (562)
T ss_dssp             ------------HHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT--TSSEEEEEEEEEEECSCCCCCCCCCC--
T ss_pred             ------------hHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh--cccccEEEEeccEeeccccchhhhcc--
Confidence                        0001122344455555555554444322    111221  13677777777777766665321100  


Q ss_pred             CCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccC-ccccc---CCCCcEEEc
Q 045139          527 PPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELP-NCSKN---WQKLTVLNL  602 (820)
Q Consensus       527 ~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~---l~~L~~L~L  602 (820)
                                        ...++                      .|+.++++.+.+  .+| ..+..   ..+|++|++
T Consensus       301 ------------------~~~L~----------------------~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l  338 (562)
T 3a79_B          301 ------------------ETALK----------------------SLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSI  338 (562)
T ss_dssp             ------------------SCSCC----------------------EEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEE
T ss_pred             ------------------cccch----------------------heehhhccccee--ecChhhhhhhhccCcceEEEc
Confidence                              01111                      334444444444  233 11211   245667777


Q ss_pred             CCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCcc--ccCcchhcCCCCccEEEcCcccc
Q 045139          603 ANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISG--IIPAWIGDSLPDLVVLSLRSNNF  680 (820)
Q Consensus       603 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~~l~~L~~L~L~~N~l  680 (820)
                      ++|.+....  ..+.+++|++|++++|++++.+|..+.++++|++|++++|++++  .+|..+. .+++|++|++++|++
T Consensus       339 ~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~l~~L~~L~l~~N~l  415 (562)
T 3a79_B          339 SDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK-NMSSLETLDVSLNSL  415 (562)
T ss_dssp             ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT-TCTTCCEEECTTSCC
T ss_pred             cCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc-CCCCCCEEECCCCcC
Confidence            777664221  12456677777777777777777777777777777777777774  2334455 577777777777777


Q ss_pred             cccCCc-ccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeeccccccccccCce
Q 045139          681 HGRVPV-QVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLV  759 (820)
Q Consensus       681 ~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  759 (820)
                      ++.+|. .+..+++|+.|++++|++++.+|..+.  +.|                                         
T Consensus       416 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L-----------------------------------------  452 (562)
T 3a79_B          416 NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKV-----------------------------------------  452 (562)
T ss_dssp             BSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTC-----------------------------------------
T ss_pred             CCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcC-----------------------------------------
Confidence            764444 466777788888888877766665443  333                                         


Q ss_pred             EEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCccc-ccCCCCCCeEeCCCCcCccc
Q 045139          760 KSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSK-IGGLTLLNSLDLSKNMLMRA  819 (820)
Q Consensus       760 ~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~LdLs~N~l~g~  819 (820)
                      +.|||++|+++ .+| .+..+++|++|+|++|+++ .+|.. |..+++|++||+++|+++|.
T Consensus       453 ~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~  512 (562)
T 3a79_B          453 KVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT  512 (562)
T ss_dssp             SEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred             CEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence            67888888887 676 6777888888888888887 45554 77788888888888888764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.3e-40  Score=391.03  Aligned_cols=558  Identities=21%  Similarity=0.178  Sum_probs=322.1

Q ss_pred             CcEEEEEcCCCCCCCCcccccccccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCc
Q 045139           88 GHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQ  167 (820)
Q Consensus        88 ~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  167 (820)
                      ..++.|||++   +.+++..+.+|.++++|++|||++|.+++. .|..|+++++|++|+|++|++++..+..|+++++|+
T Consensus        52 ~~~~~LdLs~---N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~  127 (635)
T 4g8a_A           52 FSTKNLDLSF---NPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ  127 (635)
T ss_dssp             TTCCEEECTT---SCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred             cCCCEEEeeC---CCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence            4689999999   899877778999999999999999999874 566799999999999999999966667789999999


Q ss_pred             EEeCCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCC-CccccccccCCcCCcc
Q 045139          168 YLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSV-IASSSVSFSNSSRSLA  246 (820)
Q Consensus       168 ~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~~~~~L~  246 (820)
                      +|++++| .+.......                          ++++++|++|++++|.+++. .|   ..+..+ ++|+
T Consensus       128 ~L~Ls~N-~l~~l~~~~--------------------------~~~L~~L~~L~Ls~N~l~~~~~~---~~~~~l-~~L~  176 (635)
T 4g8a_A          128 KLVAVET-NLASLENFP--------------------------IGHLKTLKELNVAHNLIQSFKLP---EYFSNL-TNLE  176 (635)
T ss_dssp             EEECTTS-CCCCSTTCC--------------------------CTTCTTCCEEECCSSCCCCCCCC---GGGGGC-TTCC
T ss_pred             EEECCCC-cCCCCChhh--------------------------hhcCcccCeeccccCccccCCCc---hhhccc-hhhh
Confidence            9999988 222111122                          44455555555555555442 22   233344 5566


Q ss_pred             EEECcCCCCCCchhhhhhcc---CCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCC-C-cchhhhccCCCcEE
Q 045139          247 HLDLSLNDVSNSVYYWLFNS---SSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLV-S-VPKSFRNLCRLRAL  321 (820)
Q Consensus       247 ~L~Ls~n~l~~~~~~~~~~~---~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~-~-ip~~l~~l~~L~~L  321 (820)
                      +|++++|.+++..+..+..+   ......++++.|.++ .++.. ......++.+++.+|... . .+..+..+..++..
T Consensus       177 ~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~-~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~  254 (635)
T 4g8a_A          177 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH  254 (635)
T ss_dssp             EEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC-EECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEE
T ss_pred             hhcccCccccccccccccchhhhhhhhhhhhcccCccc-ccCcc-cccchhhhhhhhhcccccccccchhhcCCcccccc
Confidence            66666666555444443322   223456778888877 55555 334445677777777655 2 34456777777766


Q ss_pred             EcCCCCCC------CcchhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCccccccc
Q 045139          322 YQDSNNLT------DLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLT  395 (820)
Q Consensus       322 ~L~~n~l~------~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~  395 (820)
                      .+..+...      ......+....     .+...++..+....                              .....+
T Consensus       255 ~l~~~~~~~~~~l~~~~~~~~~~~~-----~l~~~~l~~~~~~~------------------------------~~~~~~  299 (635)
T 4g8a_A          255 RLVLGEFRNEGNLEKFDKSALEGLC-----NLTIEEFRLAYLDY------------------------------YLDGII  299 (635)
T ss_dssp             EEEEECCTTSCCCSCCCTTTTGGGG-----GSEEEEEEEECCCS------------------------------CEEECT
T ss_pred             ccccccccccccccccccccccccc-----chhhhhhhhhhhcc------------------------------cccchh
Confidence            65433222      22222222222     22222222221110                              111222


Q ss_pred             ccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCC
Q 045139          396 KSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQN  475 (820)
Q Consensus       396 ~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~  475 (820)
                      ..+..+.+++.+++.++.+... +  .+....+++.|++.+|.+......   ....++.+.+..+....  +.....++
T Consensus       300 ~~~~~~~~l~~l~~~~~~~~~~-~--~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~--~~~~~~l~  371 (635)
T 4g8a_A          300 DLFNCLTNVSSFSLVSVTIERV-K--DFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGN--AFSEVDLP  371 (635)
T ss_dssp             TTTGGGTTCSEEEEESCEEEEC-G--GGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCC--BCCCCBCT
T ss_pred             hhhhhhcccccccccccccccc-c--ccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCC--Cccccccc
Confidence            3344455556666655555442 1  244455566666666554322111   11112222222222111  11122334


Q ss_pred             CccEEecCCCCccC--CCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEec
Q 045139          476 KFSELDVSAAEISD--TVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLIL  553 (820)
Q Consensus       476 ~L~~L~l~~n~i~~--~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l  553 (820)
                      +|+.+++++|.+..  ..+..+... .+|+.+++..|.                         ..+..+ .+..+.    
T Consensus       372 ~L~~L~ls~n~l~~~~~~~~~~~~~-~~L~~L~~~~~~-------------------------~~~~~~-~~~~l~----  420 (635)
T 4g8a_A          372 SLEFLDLSRNGLSFKGCCSQSDFGT-ISLKYLDLSFNG-------------------------VITMSS-NFLGLE----  420 (635)
T ss_dssp             TCCEEECCSSCCBEEEECCHHHHSC-SCCCEEECCSCS-------------------------EEEECS-CCTTCT----
T ss_pred             ccccchhhccccccccccccchhhh-hhhhhhhccccc-------------------------cccccc-cccccc----
Confidence            44444444444321  112222211 233333333332                         221111 011111    


Q ss_pred             cCcccccccchhhccccccccEEEccCCccccccC-cccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCccc
Q 045139          554 FKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELP-NCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFI  632 (820)
Q Consensus       554 ~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  632 (820)
                                        .++.++++.++.....+ ..+..+++++.++++.|++.+..+..+..+++|++|++++|.+.
T Consensus       421 ------------------~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~  482 (635)
T 4g8a_A          421 ------------------QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  482 (635)
T ss_dssp             ------------------TCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred             ------------------cccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccc
Confidence                              67777777776654443 45677778888888888888777777778888888888887643


Q ss_pred             -ccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchh
Q 045139          633 -GELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQC  711 (820)
Q Consensus       633 -~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  711 (820)
                       +..|..+..+++|++|+|++|++++..|..+. ++++|++|+|++|++++..|..+..+++|++|||++|++++..|..
T Consensus       483 ~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~-~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  561 (635)
T 4g8a_A          483 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE  561 (635)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred             cccCchhhhhccccCEEECCCCccCCcChHHHc-CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence             45677778888888888888888877777776 6888888888888888777777888888888888888888777777


Q ss_pred             cccc-ccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC--Cccc-ccCCCEEeC
Q 045139          712 LNNL-TAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP--EVTS-LVGLISLNL  787 (820)
Q Consensus       712 l~~l-~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip--~l~~-l~~L~~L~L  787 (820)
                      +.++ ++|                                         +.|||++|+++-.=.  .|.. +..-.....
T Consensus       562 l~~l~~~L-----------------------------------------~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~  600 (635)
T 4g8a_A          562 LQHFPSSL-----------------------------------------AFLNLTQNDFACTCEHQSFLQWIKDQRQLLV  600 (635)
T ss_dssp             TTCCCTTC-----------------------------------------CEEECTTCCBCCSGGGHHHHHHHHHTTTTBS
T ss_pred             HHhhhCcC-----------------------------------------CEEEeeCCCCcccCCcHHHHHHHHhCCCccC
Confidence            7665 345                                         778888888764211  1110 111111111


Q ss_pred             CCCccccCCcccccCCCCCCeEeCCCCcCcc
Q 045139          788 SKNSLTGPIPSKIGGLTLLNSLDLSKNMLMR  818 (820)
Q Consensus       788 s~N~l~~~ip~~l~~l~~L~~LdLs~N~l~g  818 (820)
                      ....++-.-|..+.+. .+..+|++ .++||
T Consensus       601 ~~~~~~C~~P~~~~g~-~l~~~~~~-C~~~g  629 (635)
T 4g8a_A          601 EVERMECATPSDKQGM-PVLSLNIT-CQMTG  629 (635)
T ss_dssp             CGGGCBBCSSTTTTTC-BGGGCCCC-C----
T ss_pred             CCCCceeCCchHHCCC-EeeeeccC-CCCCC
Confidence            2234455567776653 46677775 67776

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.2e-41  Score=389.16  Aligned_cols=459  Identities=21%  Similarity=0.289  Sum_probs=314.5

Q ss_pred             CeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCc
Q 045139          192 EYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLV  271 (820)
Q Consensus       192 ~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~  271 (820)
                      +++++++++++..   |..+.  ++|++|++++|.+++..+   ..+.++ ++|++|++++|.+++..|..+..+. +|+
T Consensus        34 ~~l~ls~~~L~~i---p~~~~--~~L~~L~Ls~N~i~~~~~---~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~  103 (562)
T 3a79_B           34 SMVDYSNRNLTHV---PKDLP--PRTKALSLSQNSISELRM---PDISFL-SELRVLRLSHNRIRSLDFHVFLFNQ-DLE  103 (562)
T ss_dssp             CEEECTTSCCCSC---CTTSC--TTCCEEECCSSCCCCCCG---GGTTTC-TTCCEEECCSCCCCEECTTTTTTCT-TCC
T ss_pred             cEEEcCCCCCccC---CCCCC--CCcCEEECCCCCccccCh---hhhccC-CCccEEECCCCCCCcCCHHHhCCCC-CCC
Confidence            5556666666653   33332  788888888888888777   566777 8899999999988877677666666 999


Q ss_pred             EEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCc--chhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCc--
Q 045139          272 YLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSV--PKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTL--  347 (820)
Q Consensus       272 ~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~i--p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L--  347 (820)
                      +|++++|.++ .+|..   .+++|++|++++|+++.+  |..|+++++|++|++++|++++.   .+..++     +|  
T Consensus       104 ~L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~-----~L~L  171 (562)
T 3a79_B          104 YLDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVA-----HLHL  171 (562)
T ss_dssp             EEECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGT-----TSCE
T ss_pred             EEECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhh-----hcee
Confidence            9999999998 78865   789999999999999865  47899999999999999999873   345555     45  


Q ss_pred             cEEEcCCCCC--cccCCC-CcCcCCCcEEecCCCcccEEEccCCcccccccc-cccCCCCCCEEecCCCc-----Ccccc
Q 045139          348 EILQLNSNML--RGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTK-SIGQLSQLELLDVASNS-----LKGMI  418 (820)
Q Consensus       348 ~~L~L~~n~l--~~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~-----l~~~~  418 (820)
                      +.|++++|.+  .+..|. +..+.. +.+        .++++.|.+.+.++. .+..+++|+.+++++|.     +.+.+
T Consensus       172 ~~L~L~~n~l~~~~~~~~~l~~l~~-~~l--------~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~  242 (562)
T 3a79_B          172 SCILLDLVSYHIKGGETESLQIPNT-TVL--------HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL  242 (562)
T ss_dssp             EEEEEEESSCCCCSSSCCEEEECCE-EEE--------EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH
T ss_pred             eEEEeecccccccccCcccccccCc-ceE--------EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHH
Confidence            9999999998  776666 544432 333        346677777765544 56678899999999985     33322


Q ss_pred             CHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhh--
Q 045139          419 TEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFW--  496 (820)
Q Consensus       419 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~--  496 (820)
                      +  .+..+++|+.++++++.+.+....                    .++.++ ...+|++|++++|.+++.+|..++  
T Consensus       243 ~--~l~~l~~L~~L~L~~~~l~~~~~~--------------------~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~  299 (562)
T 3a79_B          243 S--ELTRGPTLLNVTLQHIETTWKCSV--------------------KLFQFF-WPRPVEYLNIYNLTITERIDREEFTY  299 (562)
T ss_dssp             H--HHHSCSSCEEEEEEEEEECHHHHH--------------------HHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCC
T ss_pred             H--HHhccCcceEEEecCCcCcHHHHH--------------------HHHHhh-hcccccEEEEeccEeeccccchhhhc
Confidence            2  478889999999888776432111                    111122 234777788888877777777653  


Q ss_pred             --ccCCCcEEEEcCCCcCCCCCCc-ccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccc
Q 045139          497 --DLSPNLYYLNLSHNHFTGMLPD-LSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHF  573 (820)
Q Consensus       497 --~~~~~L~~L~ls~n~l~~~~p~-~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L  573 (820)
                        ..++.|+.+++..+.+  .+|. .+....                                            ...++
T Consensus       300 ~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~--------------------------------------------~~~~L  333 (562)
T 3a79_B          300 SETALKSLMIEHVKNQVF--LFSKEALYSVF--------------------------------------------AEMNI  333 (562)
T ss_dssp             CSCSCCEEEEEEEEECCC--SSCHHHHHHHH--------------------------------------------HTCCC
T ss_pred             ccccchheehhhccccee--ecChhhhhhhh--------------------------------------------ccCcc
Confidence              2223455555555544  2221 000000                                            00056


Q ss_pred             cEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccc--cCCcchhcCCCCCEEECC
Q 045139          574 RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIG--ELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       574 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls  651 (820)
                      +.|++++|.+....  ....+++|++|++++|++++.+|..++.+++|++|++++|++++  .+|..+.++++|++|+++
T Consensus       334 ~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~  411 (562)
T 3a79_B          334 KMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS  411 (562)
T ss_dssp             SEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred             eEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence            67777777664221  12566777777777777777777777777777777777777775  334567777777888888


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP  731 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~  731 (820)
                      +|++++.+|......+++|++|++++|++++.+|..+.  ++|+.|++++|+++ .+|..+.+++.|             
T Consensus       412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L-------------  475 (562)
T 3a79_B          412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQAL-------------  475 (562)
T ss_dssp             TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCC-------------
T ss_pred             CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCC-------------
Confidence            88777656655434677778888888877776666554  57778888888777 666666566655             


Q ss_pred             CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-C-cccccCCCEEeCCCCccccCCc
Q 045139          732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-E-VTSLVGLISLNLSKNSLTGPIP  797 (820)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~-l~~l~~L~~L~Ls~N~l~~~ip  797 (820)
                                                  +.|||++|+++ .+| . +..+++|+.|++++|.+++..|
T Consensus       476 ----------------------------~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          476 ----------------------------QELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             ----------------------------SEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             ----------------------------CEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence                                        77788888877 555 4 7777788888888887776543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.9e-41  Score=376.23  Aligned_cols=183  Identities=19%  Similarity=0.217  Sum_probs=90.3

Q ss_pred             ccccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCC
Q 045139          109 SSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQL  188 (820)
Q Consensus       109 ~~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l  188 (820)
                      +.-.+.++|++|++++|.+ +. +|+.++++++|++|++++|.+.|.+|.+++++++|+++++..|.            .
T Consensus         5 p~~~~~~~L~~L~l~~n~l-~~-iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~------------~   70 (454)
T 1jl5_A            5 PRNVSNTFLQEPLRHSSNL-TE-MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL------------D   70 (454)
T ss_dssp             -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH------------H
T ss_pred             ccccccccchhhhcccCch-hh-CChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh------------c
Confidence            4444568999999999999 54 99999999999999999999999999999999999888887661            1


Q ss_pred             CCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCC
Q 045139          189 SFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSS  268 (820)
Q Consensus       189 ~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~  268 (820)
                      ..+++|++++|.+++.+.+      .++|++|++++|.+++ +|.   .   . ++|++|++++|.+++ ++.    ..+
T Consensus        71 ~~l~~L~l~~~~l~~lp~~------~~~L~~L~l~~n~l~~-lp~---~---~-~~L~~L~l~~n~l~~-l~~----~~~  131 (454)
T 1jl5_A           71 RQAHELELNNLGLSSLPEL------PPHLESLVASCNSLTE-LPE---L---P-QSLKSLLVDNNNLKA-LSD----LPP  131 (454)
T ss_dssp             HTCSEEECTTSCCSCCCSC------CTTCSEEECCSSCCSS-CCC---C---C-TTCCEEECCSSCCSC-CCS----CCT
T ss_pred             cCCCEEEecCCccccCCCC------cCCCCEEEccCCcCCc-ccc---c---c-CCCcEEECCCCccCc-ccC----CCC
Confidence            4556666666666553321      2456666666666655 221   1   1 455555555555543 111    112


Q ss_pred             CCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCC
Q 045139          269 SLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTD  330 (820)
Q Consensus       269 ~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~  330 (820)
                      +|++|++++|.+++ +| + ++++++|++|++++|+++.+|..+   ++|++|++++|++++
T Consensus       132 ~L~~L~L~~n~l~~-lp-~-~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~  187 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK-LP-E-LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE  187 (454)
T ss_dssp             TCCEEECCSSCCSS-CC-C-CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSS
T ss_pred             CCCEEECcCCCCCC-Cc-c-cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCc
Confidence            55555555555552 44 2 555555555555555555444322   244444444444444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=8.5e-39  Score=359.48  Aligned_cols=370  Identities=19%  Similarity=0.176  Sum_probs=201.0

Q ss_pred             CccEEEcCCCCCcccCCC-CcCcCCCcEEecCCCcccEEEccCCcccccc-cccccCCCCCCEEecCCCcCccccCHHHh
Q 045139          346 TLEILQLNSNMLRGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTL-TKSIGQLSQLELLDVASNSLKGMITEAHL  423 (820)
Q Consensus       346 ~L~~L~L~~n~l~~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~l  423 (820)
                      +|++|++++|.+++..|. ++.+++|++|+++          +|.+.+.+ +..|.++++|++|++++|.+++..|. .+
T Consensus        31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~----------~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~   99 (455)
T 3v47_A           31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVE----------QQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG-AF   99 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTSSCTTCCEEECC----------CCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT-TT
T ss_pred             ccCEEEecCCccCcCChhHhccCccccEEECc----------CCcccceECcccccccccCCEEeCCCCccCccChh-hc
Confidence            566666666666655444 5555555544333          33333222 34455555666666666665554343 45


Q ss_pred             hcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcE
Q 045139          424 SNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLY  503 (820)
Q Consensus       424 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~  503 (820)
                      +++++|++|++++|.+.+..+..                      ..+..+++|++|++++|.+.+..|..++..+++|+
T Consensus       100 ~~l~~L~~L~L~~n~l~~~~~~~----------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  157 (455)
T 3v47_A          100 NGLANLEVLTLTQCNLDGAVLSG----------------------NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH  157 (455)
T ss_dssp             TTCTTCCEEECTTSCCBTHHHHS----------------------STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC
T ss_pred             cCcccCCEEeCCCCCCCccccCc----------------------ccccCcccCCEEECCCCccCccCcccccCCCCccc
Confidence            55556666666655554322211                      11455555555555555555555554333335555


Q ss_pred             EEEcCCCcCCCCCCccccccc--CCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCC
Q 045139          504 YLNLSHNHFTGMLPDLSQKFT--AYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDN  581 (820)
Q Consensus       504 ~L~ls~n~l~~~~p~~~~~~~--~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n  581 (820)
                      +|++++|++++..|..+..+.  .+ +.+++++|.+.+..+.......            .+..  ....+|++|++++|
T Consensus       158 ~L~L~~n~l~~~~~~~l~~l~~~~L-~~L~l~~n~l~~~~~~~~~~~~------------~~~~--~~~~~L~~L~Ls~n  222 (455)
T 3v47_A          158 VLDLTFNKVKSICEEDLLNFQGKHF-TLLRLSSITLQDMNEYWLGWEK------------CGNP--FKNTSITTLDLSGN  222 (455)
T ss_dssp             EEECTTCCBSCCCTTTSGGGTTCEE-EEEECTTCBCTTCSTTCTTHHH------------HCCT--TTTCEEEEEECTTS
T ss_pred             EEeCCCCcccccChhhhhccccccc-cccccccCcccccchhhccccc------------cccc--cccceeeeEecCCC
Confidence            555555555555444333221  11 2333333333221111100000            0000  00015666666666


Q ss_pred             ccccccCcccccC---CCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhc--CCCCCEEECCCCcCc
Q 045139          582 LLSGELPNCSKNW---QKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKS--FTQLTVLDLGHNKIS  656 (820)
Q Consensus       582 ~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~--l~~L~~L~Ls~N~l~  656 (820)
                      ++++..|..+...   ++|+.|++++|.+.+...              ..+.+.+..+..+..  .++|++|++++|+++
T Consensus       223 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  288 (455)
T 3v47_A          223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF  288 (455)
T ss_dssp             CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCC
T ss_pred             cccccchhhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCcccc
Confidence            6666666555443   566666666665443211              011111122222222  256777777777777


Q ss_pred             cccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCcccc
Q 045139          657 GIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDY  736 (820)
Q Consensus       657 ~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~  736 (820)
                      +.+|..+. .+++|++|++++|++++..|..+..+++|++|++++|++++..|..+.+++.|                  
T Consensus       289 ~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------------------  349 (455)
T 3v47_A          289 ALLKSVFS-HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL------------------  349 (455)
T ss_dssp             EECTTTTT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC------------------
T ss_pred             ccchhhcc-cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC------------------
Confidence            66666665 57777777777777776666677777777777777777766666666666655                  


Q ss_pred             ccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCc
Q 045139          737 YNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNM  815 (820)
Q Consensus       737 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~  815 (820)
                                             +.|||++|++++.+| .+..+++|++|+|++|++++..+..|..+++|++|++++|+
T Consensus       350 -----------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          350 -----------------------EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             -----------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             -----------------------CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence                                   667777777776666 67777777777777777776555566777777777777777


Q ss_pred             Cccc
Q 045139          816 LMRA  819 (820)
Q Consensus       816 l~g~  819 (820)
                      ++|.
T Consensus       407 l~~~  410 (455)
T 3v47_A          407 WDCS  410 (455)
T ss_dssp             BCCC
T ss_pred             cccC
Confidence            7665

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=3e-40  Score=350.58  Aligned_cols=293  Identities=28%  Similarity=0.412  Sum_probs=239.0

Q ss_pred             cCCHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCcc--cCceEecCCC--CcEEEEEcCCCCCCCCcc--cccccccC
Q 045139           40 KCIERERQALLMFKQGLIDEYGHLSSWGNEDDKKDCCK--WRGVSCSNQT--GHVTMLNLQFRSYMPLRG--NISSSLIG  113 (820)
Q Consensus        40 ~~~~~~~~~l~~~~~~~~~~~~~~~~W~~~~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~~~~l~g--~i~~~l~~  113 (820)
                      .|.++|++||++||+++.+|. .+.+|.   .+.+||.  |.||+|+..+  ++|+.|+|++   +.+.|  .+|+.+++
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~---~~l~~~~~~~~~l~~   74 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG---LNLPKPYPIPSSLAN   74 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEEC---CCCSSCEECCGGGGG
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCC---CCccCCcccChhHhC
Confidence            599999999999999998876 789997   4678998  9999998654  8999999999   89999  99999999


Q ss_pred             CCCCCEEECcC-CCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCC
Q 045139          114 LQHLNYLNMKY-NDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLE  192 (820)
Q Consensus       114 l~~L~~L~Ls~-n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~  192 (820)
                      +++|++|++++ |.+.+. +|..++++++|++|+|++|.+++.+|..++++++|++|++++|                  
T Consensus        75 l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N------------------  135 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN------------------  135 (313)
T ss_dssp             CTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS------------------
T ss_pred             CCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCC------------------
Confidence            99999999995 999886 9999999999999999999999999999999999999999988                  


Q ss_pred             eeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcE
Q 045139          193 YVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVY  272 (820)
Q Consensus       193 ~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~  272 (820)
                             .+.+  .+|..++++++|++|++++|.+++.+|   ..+..+.++|++|++++|.+++.+|..+...  +|++
T Consensus       136 -------~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l--~L~~  201 (313)
T 1ogq_A          136 -------ALSG--TLPPSISSLPNLVGITFDGNRISGAIP---DSYGSFSKLFTSMTISRNRLTGKIPPTFANL--NLAF  201 (313)
T ss_dssp             -------EEES--CCCGGGGGCTTCCEEECCSSCCEEECC---GGGGCCCTTCCEEECCSSEEEEECCGGGGGC--CCSE
T ss_pred             -------ccCC--cCChHHhcCCCCCeEECcCCcccCcCC---HHHhhhhhcCcEEECcCCeeeccCChHHhCC--cccE
Confidence                   2221  234556677777777777777776666   5566662378888888888887777776665  3888


Q ss_pred             EEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEc
Q 045139          273 LDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQL  352 (820)
Q Consensus       273 L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L  352 (820)
                      |++++|.+++.+|.. +..+++|++|++++|+++..++.+..+++|++|++++|++++.+|..+..++     +|+.|++
T Consensus       202 L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-----~L~~L~L  275 (313)
T 1ogq_A          202 VDLSRNMLEGDASVL-FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK-----FLHSLNV  275 (313)
T ss_dssp             EECCSSEEEECCGGG-CCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCT-----TCCEEEC
T ss_pred             EECcCCcccCcCCHH-HhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCc-----CCCEEEC
Confidence            888888888666655 8888888888888888885555577888888888888888888888888877     7888888


Q ss_pred             CCCCCcccCCCCcCcCCCcEEecCCC
Q 045139          353 NSNMLRGSLPDITLFSSLKELHLYDN  378 (820)
Q Consensus       353 ~~n~l~~~~p~~~~l~~L~~L~l~~n  378 (820)
                      ++|++++.+|....+++|+.+++++|
T Consensus       276 s~N~l~~~ip~~~~l~~L~~l~l~~N  301 (313)
T 1ogq_A          276 SFNNLCGEIPQGGNLQRFDVSAYANN  301 (313)
T ss_dssp             CSSEEEEECCCSTTGGGSCGGGTCSS
T ss_pred             cCCcccccCCCCccccccChHHhcCC
Confidence            88888877777666666666555443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=7.3e-38  Score=351.86  Aligned_cols=387  Identities=21%  Similarity=0.240  Sum_probs=262.5

Q ss_pred             cEEECcCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCC-Ccc-hhhhccCCCcEEEc
Q 045139          246 AHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLV-SVP-KSFRNLCRLRALYQ  323 (820)
Q Consensus       246 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~-~ip-~~l~~l~~L~~L~L  323 (820)
                      +.++.+++.++ .+|.    ..++|++|++++|.+++..|.. |+++++|++|++++|.+. .++ ..|.++++|++|++
T Consensus        13 ~~~~c~~~~l~-~lp~----l~~~l~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L   86 (455)
T 3v47_A           13 YNAICINRGLH-QVPE----LPAHVNYVDLSLNSIAELNETS-FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL   86 (455)
T ss_dssp             TEEECCSSCCS-SCCC----CCTTCCEEECCSSCCCEECTTT-TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred             cccCcCCCCcc-cCCC----CCCccCEEEecCCccCcCChhH-hccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence            34556666554 3443    2236777777777776433444 667777777777777665 443 34666666777777


Q ss_pred             CCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCC
Q 045139          324 DSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQ  403 (820)
Q Consensus       324 ~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~  403 (820)
                      ++|++++..|..|..++     +|++|++++|.+++.++.                               ...+..+++
T Consensus        87 s~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~-------------------------------~~~~~~l~~  130 (455)
T 3v47_A           87 DYNQFLQLETGAFNGLA-----NLEVLTLTQCNLDGAVLS-------------------------------GNFFKPLTS  130 (455)
T ss_dssp             TTCTTCEECTTTTTTCT-----TCCEEECTTSCCBTHHHH-------------------------------SSTTTTCTT
T ss_pred             CCCccCccChhhccCcc-----cCCEEeCCCCCCCccccC-------------------------------cccccCccc
Confidence            76666666666666665     666666666666543222                               011444444


Q ss_pred             CCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCc--cccceeecccccCCCCCchh--------hhc
Q 045139          404 LELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPS--FELNIIRLGACKQGPQFPKW--------LQT  473 (820)
Q Consensus       404 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~--------l~~  473 (820)
                      |++|++++|.+++..|...+.++++|++|++++|.+.+..+..+...  ..++.+++++|.+....+.+        +..
T Consensus       131 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~  210 (455)
T 3v47_A          131 LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK  210 (455)
T ss_dssp             CCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTT
T ss_pred             CCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccc
Confidence            44444444444443333224444455555555554444443333322  33444444444444333322        235


Q ss_pred             CCCccEEecCCCCccCCCCchhhccC--CCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEE
Q 045139          474 QNKFSELDVSAAEISDTVPNWFWDLS--PNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSL  551 (820)
Q Consensus       474 ~~~L~~L~l~~n~i~~~~p~~~~~~~--~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l  551 (820)
                      +++|++|++++|.+.+..|..+....  ++++.|++++|...+....               .+.+.+..+..+..+   
T Consensus       211 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~---  272 (455)
T 3v47_A          211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG---------------HTNFKDPDNFTFKGL---  272 (455)
T ss_dssp             TCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT---------------CCSSCCCCTTTTGGG---
T ss_pred             cceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc---------------hhhhccCcccccccc---
Confidence            57788888888888877777665432  5788888888876543211               111111111111110   


Q ss_pred             eccCcccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcc
Q 045139          552 ILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSF  631 (820)
Q Consensus       552 ~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  631 (820)
                                       ...+|++|++++|.+++..|..+..+++|++|++++|++++..|..|+.+++|++|++++|.+
T Consensus       273 -----------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  335 (455)
T 3v47_A          273 -----------------EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL  335 (455)
T ss_dssp             -----------------TTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             -----------------cccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc
Confidence                             011799999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccch
Q 045139          632 IGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQ  710 (820)
Q Consensus       632 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  710 (820)
                      ++..|..+.++++|++|++++|++++..|.++. .+++|++|++++|++++..+..+..+++|+.|++++|++++..|.
T Consensus       336 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CEECGGGGTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCcChhHhcCcccCCEEECCCCcccccChhhcc-ccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            999999999999999999999999988898887 799999999999999987777789999999999999999998873

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=5.8e-38  Score=349.64  Aligned_cols=356  Identities=24%  Similarity=0.317  Sum_probs=178.4

Q ss_pred             CCccEEECcCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCC-------------CEEECCCCCCCCcc
Q 045139          243 RSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSL-------------SYLDLSNNQLVSVP  309 (820)
Q Consensus       243 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L-------------~~L~Ls~n~l~~ip  309 (820)
                      +.|++|++++|.+ +.+|.+++++. +|++|++++|.++|.+|.. ++.+++|             ++|++++|+++.+|
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~-~L~~L~l~~n~~~~~~p~~-~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp   87 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVK-SKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP   87 (454)
T ss_dssp             ------------------------C-CHHHHHHHHHHHHHTSCTT-SCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred             ccchhhhcccCch-hhCChhHhccc-chhhhhccCCcccccCCcc-cccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence            4455555555555 45555554444 5555555555555555555 5555443             55555555555544


Q ss_pred             hhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCc
Q 045139          310 KSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNR  389 (820)
Q Consensus       310 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~  389 (820)
                      ..   .++|++|++++|.+++ +|..+   .     +|+.|++++|.+.+ +|.+  .++|++|          ++++|.
T Consensus        88 ~~---~~~L~~L~l~~n~l~~-lp~~~---~-----~L~~L~l~~n~l~~-l~~~--~~~L~~L----------~L~~n~  142 (454)
T 1jl5_A           88 EL---PPHLESLVASCNSLTE-LPELP---Q-----SLKSLLVDNNNLKA-LSDL--PPLLEYL----------GVSNNQ  142 (454)
T ss_dssp             SC---CTTCSEEECCSSCCSS-CCCCC---T-----TCCEEECCSSCCSC-CCSC--CTTCCEE----------ECCSSC
T ss_pred             CC---cCCCCEEEccCCcCCc-ccccc---C-----CCcEEECCCCccCc-ccCC--CCCCCEE----------ECcCCC
Confidence            31   2445555555555554 23211   2     45555555555543 1111  0233333          223333


Q ss_pred             ccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCch
Q 045139          390 FTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPK  469 (820)
Q Consensus       390 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  469 (820)
                      +++ +| .++++++|++|++++|++++ +|.    ..++|++|++++|++.+                         +| 
T Consensus       143 l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~----~~~~L~~L~L~~n~l~~-------------------------l~-  189 (454)
T 1jl5_A          143 LEK-LP-ELQNSSFLKIIDVDNNSLKK-LPD----LPPSLEFIAAGNNQLEE-------------------------LP-  189 (454)
T ss_dssp             CSS-CC-CCTTCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSS-------------------------CC-
T ss_pred             CCC-Cc-ccCCCCCCCEEECCCCcCcc-cCC----CcccccEEECcCCcCCc-------------------------Cc-
Confidence            332 33 35555555555555555544 332    12345555555554432                         22 


Q ss_pred             hhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcce
Q 045139          470 WLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVT  549 (820)
Q Consensus       470 ~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~  549 (820)
                      .+..+++|++|++++|.+++ +|..    .++|++|++++|.++ .+|. +..++.+ +.+++++|++++ +|..+.   
T Consensus       190 ~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~n~l~-~lp~-~~~l~~L-~~L~l~~N~l~~-l~~~~~---  257 (454)
T 1jl5_A          190 ELQNLPFLTAIYADNNSLKK-LPDL----PLSLESIVAGNNILE-ELPE-LQNLPFL-TTIYADNNLLKT-LPDLPP---  257 (454)
T ss_dssp             CCTTCTTCCEEECCSSCCSS-CCCC----CTTCCEEECCSSCCS-SCCC-CTTCTTC-CEEECCSSCCSS-CCSCCT---
T ss_pred             cccCCCCCCEEECCCCcCCc-CCCC----cCcccEEECcCCcCC-cccc-cCCCCCC-CEEECCCCcCCc-cccccc---
Confidence            23444455555555555443 2221    135555555555555 3332 3444444 555555555543 222211   


Q ss_pred             EEeccCcccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCC
Q 045139          550 SLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNN  629 (820)
Q Consensus       550 ~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  629 (820)
                                            +|++|++++|++++ +|..   .++|++|++++|++++. |..   .++|++|++++|
T Consensus       258 ----------------------~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N  307 (454)
T 1jl5_A          258 ----------------------SLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSN  307 (454)
T ss_dssp             ----------------------TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSS
T ss_pred             ----------------------ccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCC
Confidence                                  66777777777764 4433   36777777777777752 211   156778888888


Q ss_pred             cccccCCcchhcC-CCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCcc--
Q 045139          630 SFIGELPSSVKSF-TQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISG--  706 (820)
Q Consensus       630 ~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--  706 (820)
                      ++++. +    .+ ++|++|++++|++++ +|..    +++|++|++++|+++ .+|.   .+++|++|++++|++++  
T Consensus       308 ~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~----~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~  373 (454)
T 1jl5_A          308 EIRSL-C----DLPPSLEELNVSNNKLIE-LPAL----PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFP  373 (454)
T ss_dssp             CCSEE-C----CCCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCC
T ss_pred             cCCcc-c----CCcCcCCEEECCCCcccc-cccc----CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCC
Confidence            77752 2    22 478888888888874 6643    567888888888887 4665   46788888888888887  


Q ss_pred             ccchhcccc
Q 045139          707 TVPQCLNNL  715 (820)
Q Consensus       707 ~~p~~l~~l  715 (820)
                      .+|..+.++
T Consensus       374 ~ip~~l~~L  382 (454)
T 1jl5_A          374 DIPESVEDL  382 (454)
T ss_dssp             CCCTTCCEE
T ss_pred             CChHHHHhh
Confidence            566655543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3.5e-37  Score=343.61  Aligned_cols=273  Identities=23%  Similarity=0.235  Sum_probs=213.6

Q ss_pred             cccccccccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchh
Q 045139          104 RGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLE  183 (820)
Q Consensus       104 ~g~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~  183 (820)
                      .+..+.+++++++|++|++++|.+++  +| .++.+++|++|++++|.+++ +|  ++.+++|++|++++|. +..  + 
T Consensus        31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~-l~~--~-  100 (457)
T 3bz5_A           31 QATDTISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNK-LTN--L-  100 (457)
T ss_dssp             CTTSEEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSC-CSC--C-
T ss_pred             CcccccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCC-Cce--e-
Confidence            33445577888899999999998876  55 68888999999999999886 44  8888999999999882 222  2 


Q ss_pred             hccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhh
Q 045139          184 WLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWL  263 (820)
Q Consensus       184 ~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~  263 (820)
                      .++++++|++|++++|.+.+.   +  ++++++|++|++++|.+++. +     ++.+ ++|++|++++|...+.++  +
T Consensus       101 ~~~~l~~L~~L~L~~N~l~~l---~--~~~l~~L~~L~l~~N~l~~l-~-----l~~l-~~L~~L~l~~n~~~~~~~--~  166 (457)
T 3bz5_A          101 DVTPLTKLTYLNCDTNKLTKL---D--VSQNPLLTYLNCARNTLTEI-D-----VSHN-TQLTELDCHLNKKITKLD--V  166 (457)
T ss_dssp             CCTTCTTCCEEECCSSCCSCC---C--CTTCTTCCEEECTTSCCSCC-C-----CTTC-TTCCEEECTTCSCCCCCC--C
T ss_pred             ecCCCCcCCEEECCCCcCCee---c--CCCCCcCCEEECCCCcccee-c-----cccC-CcCCEEECCCCCcccccc--c
Confidence            278888999999999988874   2  78899999999999998884 2     4555 889999999997666653  4


Q ss_pred             hccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCC
Q 045139          264 FNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCS  343 (820)
Q Consensus       264 ~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~  343 (820)
                      .... +|++|++++|.+++ +|   ++.+++|++|++++|+++.++  ++.+++|++|++++|++++. |  +..++   
T Consensus       167 ~~l~-~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~i-p--~~~l~---  233 (457)
T 3bz5_A          167 TPQT-QLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEI-D--VTPLT---  233 (457)
T ss_dssp             TTCT-TCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C--CTTCT---
T ss_pred             ccCC-cCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCccccc-C--ccccC---
Confidence            4444 99999999999984 66   778999999999999999874  88899999999999999984 4  66676   


Q ss_pred             cCCccEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccC
Q 045139          344 RDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMIT  419 (820)
Q Consensus       344 ~~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  419 (820)
                        +|+.|++++|++++..  .+.+++|+.|+++.|.++.+++++|.+.+.+|  ++.+++|+.|++++|...+.+|
T Consensus       234 --~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~  303 (457)
T 3bz5_A          234 --QLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD  303 (457)
T ss_dssp             --TCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred             --CCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceec
Confidence              8999999999998753  56788899998888777777777777666655  3456666666666665544433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=4.3e-36  Score=334.82  Aligned_cols=360  Identities=23%  Similarity=0.246  Sum_probs=228.8

Q ss_pred             HhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCC
Q 045139          210 VVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAF  289 (820)
Q Consensus       210 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l  289 (820)
                      .++++++|++|++++|.+++. |    .+..+ ++|++|++++|.+++. |  +.... +|++|++++|.+++ ++   +
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~-~----~l~~l-~~L~~L~Ls~n~l~~~-~--~~~l~-~L~~L~Ls~N~l~~-~~---~  102 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDM-T----GIEKL-TGLTKLICTSNNITTL-D--LSQNT-NLTYLACDSNKLTN-LD---V  102 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCC-T----TGGGC-TTCSEEECCSSCCSCC-C--CTTCT-TCSEEECCSSCCSC-CC---C
T ss_pred             ChhHcCCCCEEEccCCCcccC-h----hhccc-CCCCEEEccCCcCCeE-c--cccCC-CCCEEECcCCCCce-ee---c
Confidence            455567777777777777654 2    34444 6677777777766653 2  33333 66777777766663 33   5


Q ss_pred             CCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcCC
Q 045139          290 PNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSS  369 (820)
Q Consensus       290 ~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~  369 (820)
                      +.+++|++|++++|+++.+|  ++.+++|++|++++|++++. +  +..++     +|+.|++++|...+.+ .++.+++
T Consensus       103 ~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~-----~L~~L~l~~n~~~~~~-~~~~l~~  171 (457)
T 3bz5_A          103 TPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEI-D--VSHNT-----QLTELDCHLNKKITKL-DVTPQTQ  171 (457)
T ss_dssp             TTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCC-C--CTTCT-----TCCEEECTTCSCCCCC-CCTTCTT
T ss_pred             CCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCcccee-c--cccCC-----cCCEEECCCCCccccc-ccccCCc
Confidence            66666777777766666654  66666666666666666664 1  44444     5666666666544444 3455555


Q ss_pred             CcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcC
Q 045139          370 LKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVP  449 (820)
Q Consensus       370 L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  449 (820)
                      |++|++++|          ++++ +|  +..+++|+.|++++|++++.    .++.+++|++|++++|++++        
T Consensus       172 L~~L~ls~n----------~l~~-l~--l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N~l~~--------  226 (457)
T 3bz5_A          172 LTTLDCSFN----------KITE-LD--VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLTE--------  226 (457)
T ss_dssp             CCEEECCSS----------CCCC-CC--CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSC--------
T ss_pred             CCEEECCCC----------ccce-ec--cccCCCCCEEECcCCcCCee----ccccCCCCCEEECcCCcccc--------
Confidence            555444333          3332 22  45556666666666666553    25555666666666665532        


Q ss_pred             ccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCc
Q 045139          450 SFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPE  529 (820)
Q Consensus       450 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~  529 (820)
                                       +|  +..+++|+.|++++|++++..+..    +++|+.|++++|++               +.
T Consensus       227 -----------------ip--~~~l~~L~~L~l~~N~l~~~~~~~----l~~L~~L~l~~n~L---------------~~  268 (457)
T 3bz5_A          227 -----------------ID--VTPLTQLTYFDCSVNPLTELDVST----LSKLTTLHCIQTDL---------------LE  268 (457)
T ss_dssp             -----------------CC--CTTCTTCSEEECCSSCCSCCCCTT----CTTCCEEECTTCCC---------------SC
T ss_pred             -----------------cC--ccccCCCCEEEeeCCcCCCcCHHH----CCCCCEEeccCCCC---------------CE
Confidence                             23  455666777777777776643222    25677777666543               45


Q ss_pred             eeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeee
Q 045139          530 IDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSG  609 (820)
Q Consensus       530 l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  609 (820)
                      +++++|.+.|.+|.  ..+.                      +|+.|++++|...+.+|.   ...+|+.|++++|    
T Consensus       269 L~l~~n~~~~~~~~--~~l~----------------------~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~----  317 (457)
T 3bz5_A          269 IDLTHNTQLIYFQA--EGCR----------------------KIKELDVTHNTQLYLLDC---QAAGITELDLSQN----  317 (457)
T ss_dssp             CCCTTCTTCCEEEC--TTCT----------------------TCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC----
T ss_pred             EECCCCccCCcccc--cccc----------------------cCCEEECCCCcccceecc---CCCcceEechhhc----
Confidence            56666666655542  1111                      677888888877766664   3455666655554    


Q ss_pred             cCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccC
Q 045139          610 KIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVC  689 (820)
Q Consensus       610 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~  689 (820)
                               ++|++|++++|++++. +  ++++++|+.|++++|++++         ++.|..|++++|.+.|.     .
T Consensus       318 ---------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~---------l~~L~~L~l~~n~l~g~-----~  371 (457)
T 3bz5_A          318 ---------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD---------FSSVGKIPALNNNFEAE-----G  371 (457)
T ss_dssp             ---------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB---------CTTGGGSSGGGTSEEEE-----E
T ss_pred             ---------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC---------ccccccccccCCcEEec-----c
Confidence                     6889999999999984 3  8899999999999999985         34566678999999876     3


Q ss_pred             CCCCCCEEeCcCCCCccccchhccc
Q 045139          690 HLQRIQVLDLSQNNISGTVPQCLNN  714 (820)
Q Consensus       690 ~l~~L~~L~Ls~N~l~~~~p~~l~~  714 (820)
                      .+..|+.+++++|+++|.+|..+..
T Consensus       372 ~~~~l~~l~l~~N~l~g~ip~~~~~  396 (457)
T 3bz5_A          372 QTITMPKETLTNNSLTIAVSPDLLD  396 (457)
T ss_dssp             EEEECCCBCCBTTBEEEECCTTCBC
T ss_pred             eeeecCccccccCcEEEEcChhHhc
Confidence            4567888999999999999987644

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.6e-34  Score=323.16  Aligned_cols=324  Identities=27%  Similarity=0.378  Sum_probs=157.4

Q ss_pred             CCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCcc
Q 045139          269 SLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLE  348 (820)
Q Consensus       269 ~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~  348 (820)
                      +++.|+++++.+. .+|.  +..+++|++|++++|.++.+|+ +.++++|++|++++|++++..+  +..++     +|+
T Consensus        47 ~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~-----~L~  115 (466)
T 1o6v_A           47 QVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP--LANLT-----NLT  115 (466)
T ss_dssp             TCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCT-----TCC
T ss_pred             cccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh--hcCCC-----CCC
Confidence            5555566555555 3442  5555566666666666655554 5556666666666666655444  55554     566


Q ss_pred             EEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCC
Q 045139          349 ILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSR  428 (820)
Q Consensus       349 ~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~  428 (820)
                      +|++++|.+.+. +.+..+++|++|++++|          .+++ ++ .+..+++|+.|+++ |.+.+. +  .+.++++
T Consensus       116 ~L~L~~n~l~~~-~~~~~l~~L~~L~l~~n----------~l~~-~~-~~~~l~~L~~L~l~-~~~~~~-~--~~~~l~~  178 (466)
T 1o6v_A          116 GLTLFNNQITDI-DPLKNLTNLNRLELSSN----------TISD-IS-ALSGLTSLQQLSFG-NQVTDL-K--PLANLTT  178 (466)
T ss_dssp             EEECCSSCCCCC-GGGTTCTTCSEEEEEEE----------EECC-CG-GGTTCTTCSEEEEE-ESCCCC-G--GGTTCTT
T ss_pred             EEECCCCCCCCC-hHHcCCCCCCEEECCCC----------ccCC-Ch-hhccCCcccEeecC-CcccCc-h--hhccCCC
Confidence            666666655533 22455555554443332          2222 12 25556666666664 333332 2  2555666


Q ss_pred             CCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcC
Q 045139          429 LTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLS  508 (820)
Q Consensus       429 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls  508 (820)
                      |++|++++|.+...                          ..+..+++|++|++++|.+.+..|  +. .+++|+.|+++
T Consensus       179 L~~L~l~~n~l~~~--------------------------~~l~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~l~  229 (466)
T 1o6v_A          179 LERLDISSNKVSDI--------------------------SVLAKLTNLESLIATNNQISDITP--LG-ILTNLDELSLN  229 (466)
T ss_dssp             CCEEECCSSCCCCC--------------------------GGGGGCTTCSEEECCSSCCCCCGG--GG-GCTTCCEEECC
T ss_pred             CCEEECcCCcCCCC--------------------------hhhccCCCCCEEEecCCccccccc--cc-ccCCCCEEECC
Confidence            66666666654321                          123444555555555555544433  11 23456666666


Q ss_pred             CCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccC
Q 045139          509 HNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELP  588 (820)
Q Consensus       509 ~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p  588 (820)
                      +|++++. + .+..++                                               +|+.|++++|.+++..|
T Consensus       230 ~n~l~~~-~-~l~~l~-----------------------------------------------~L~~L~l~~n~l~~~~~  260 (466)
T 1o6v_A          230 GNQLKDI-G-TLASLT-----------------------------------------------NLTDLDLANNQISNLAP  260 (466)
T ss_dssp             SSCCCCC-G-GGGGCT-----------------------------------------------TCSEEECCSSCCCCCGG
T ss_pred             CCCcccc-h-hhhcCC-----------------------------------------------CCCEEECCCCccccchh
Confidence            6555432 1 111111                                               34444444444443322


Q ss_pred             cccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCC
Q 045139          589 NCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLP  668 (820)
Q Consensus       589 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~  668 (820)
                        +..+++|++|++++|++++..+  +..+++|++|++++|++.+..+  +..+++|++|++++|++++..|  +. .++
T Consensus       261 --~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~-~l~  331 (466)
T 1o6v_A          261 --LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VS-SLT  331 (466)
T ss_dssp             --GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GG-GCT
T ss_pred             --hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hc-cCc
Confidence              4444455555555555443222  4444555555555555544322  4445555555555555544333  22 345


Q ss_pred             CccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccc
Q 045139          669 DLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVP  709 (820)
Q Consensus       669 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  709 (820)
                      +|++|++++|++++.  ..+..+++|+.|++++|++++..|
T Consensus       332 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          332 KLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred             cCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence            555555555555432  234445555555555555544443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.5e-34  Score=325.28  Aligned_cols=346  Identities=26%  Similarity=0.379  Sum_probs=262.0

Q ss_pred             CCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcCCC
Q 045139          291 NPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSL  370 (820)
Q Consensus       291 ~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~L  370 (820)
                      .+++++.|+++++.++.+|. +..+++|++|++++|.+++..+  +..++     +|++|++++|.+.+..+ ++.+++|
T Consensus        44 ~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~-----~L~~L~l~~n~l~~~~~-~~~l~~L  114 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP--LKNLT-----KLVDILMNNNQIADITP-LANLTNL  114 (466)
T ss_dssp             HHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCT-----TCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred             HhccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh--hhccc-----cCCEEECCCCccccChh-hcCCCCC
Confidence            46789999999999998875 8889999999999999998765  77777     89999999998886554 7777777


Q ss_pred             cEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCc
Q 045139          371 KELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPS  450 (820)
Q Consensus       371 ~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~  450 (820)
                      ++|++++|          .+++. +. +.++++|++|++++|.+++ ++  .+..+++|++|++++ .+.          
T Consensus       115 ~~L~L~~n----------~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~-~~~----------  168 (466)
T 1o6v_A          115 TGLTLFNN----------QITDI-DP-LKNLTNLNRLELSSNTISD-IS--ALSGLTSLQQLSFGN-QVT----------  168 (466)
T ss_dssp             CEEECCSS----------CCCCC-GG-GTTCTTCSEEEEEEEEECC-CG--GGTTCTTCSEEEEEE-SCC----------
T ss_pred             CEEECCCC----------CCCCC-hH-HcCCCCCCEEECCCCccCC-Ch--hhccCCcccEeecCC-ccc----------
Confidence            77655544          44433 22 7778888888888888776 33  377788888887753 221          


Q ss_pred             cccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCce
Q 045139          451 FELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEI  530 (820)
Q Consensus       451 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l  530 (820)
                                     ..+ .+..+++|++|++++|.+.+. + .+.. +++|++|++++|.+.+..|.  ..++      
T Consensus       169 ---------------~~~-~~~~l~~L~~L~l~~n~l~~~-~-~l~~-l~~L~~L~l~~n~l~~~~~~--~~l~------  221 (466)
T 1o6v_A          169 ---------------DLK-PLANLTTLERLDISSNKVSDI-S-VLAK-LTNLESLIATNNQISDITPL--GILT------  221 (466)
T ss_dssp             ---------------CCG-GGTTCTTCCEEECCSSCCCCC-G-GGGG-CTTCSEEECCSSCCCCCGGG--GGCT------
T ss_pred             ---------------Cch-hhccCCCCCEEECcCCcCCCC-h-hhcc-CCCCCEEEecCCcccccccc--cccC------
Confidence                           111 266777788888888777653 2 2322 35677777777766654331  1111      


Q ss_pred             eccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeec
Q 045139          531 DLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGK  610 (820)
Q Consensus       531 ~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  610 (820)
                                                               +|+.|++++|++++.  ..+..+++|++|++++|++.+.
T Consensus       222 -----------------------------------------~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~  258 (466)
T 1o6v_A          222 -----------------------------------------NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL  258 (466)
T ss_dssp             -----------------------------------------TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred             -----------------------------------------CCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccc
Confidence                                                     678888888888753  4678889999999999999865


Q ss_pred             CCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCC
Q 045139          611 IPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCH  690 (820)
Q Consensus       611 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~  690 (820)
                      .|  +..+++|++|++++|.+++..+  +..+++|++|++++|++++..|  +. .+++|+.|++++|++++..|  +..
T Consensus       259 ~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~-~l~~L~~L~L~~n~l~~~~~--~~~  329 (466)
T 1o6v_A          259 AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--IS-NLKNLTYLTLYFNNISDISP--VSS  329 (466)
T ss_dssp             GG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GG-GCTTCSEEECCSSCCSCCGG--GGG
T ss_pred             hh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hc-CCCCCCEEECcCCcCCCchh--hcc
Confidence            54  8888999999999999986544  8889999999999999986544  44 68999999999999987665  678


Q ss_pred             CCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCe
Q 045139          691 LQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLY  770 (820)
Q Consensus       691 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~  770 (820)
                      +++|+.|++++|++++.  ..+.+++.|                                         +.|++++|+++
T Consensus       330 l~~L~~L~l~~n~l~~~--~~l~~l~~L-----------------------------------------~~L~l~~n~l~  366 (466)
T 1o6v_A          330 LTKLQRLFFYNNKVSDV--SSLANLTNI-----------------------------------------NWLSAGHNQIS  366 (466)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGTTCTTC-----------------------------------------CEEECCSSCCC
T ss_pred             CccCCEeECCCCccCCc--hhhccCCCC-----------------------------------------CEEeCCCCccC
Confidence            89999999999998864  345555555                                         88999999998


Q ss_pred             ecCCCcccccCCCEEeCCCCcccc
Q 045139          771 GEIPEVTSLVGLISLNLSKNSLTG  794 (820)
Q Consensus       771 ~~ip~l~~l~~L~~L~Ls~N~l~~  794 (820)
                      +.+| +..+++|+.|++++|.+++
T Consensus       367 ~~~~-~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          367 DLTP-LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             BCGG-GTTCTTCCEEECCCEEEEC
T ss_pred             ccch-hhcCCCCCEEeccCCcccC
Confidence            7777 8888999999999999886

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.3e-33  Score=319.06  Aligned_cols=319  Identities=20%  Similarity=0.204  Sum_probs=184.3

Q ss_pred             ccEEEcCCCCCcccCCC-CcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhc
Q 045139          347 LEILQLNSNMLRGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSN  425 (820)
Q Consensus       347 L~~L~L~~n~l~~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~  425 (820)
                      -+.++.+++.++. +|. +  .+.++.|          ++++|++++..+..|.++++|++|++++|.+++..|. .|.+
T Consensus        13 ~~~v~c~~~~l~~-ip~~~--~~~l~~L----------~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~   78 (477)
T 2id5_A           13 DRAVLCHRKRFVA-VPEGI--PTETRLL----------DLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG-AFNN   78 (477)
T ss_dssp             TTEEECCSCCCSS-CCSCC--CTTCSEE----------ECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTT
T ss_pred             CCEEEeCCCCcCc-CCCCC--CCCCcEE----------ECCCCccceECHhHccCCCCCCEEECCCCccCEeChh-hhhC
Confidence            3466666666653 333 2  2344433          3444445545555666666666666666666654443 4666


Q ss_pred             CCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEE
Q 045139          426 LSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYL  505 (820)
Q Consensus       426 l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L  505 (820)
                      +++|++|++++|.+..                        ..+..+..+++|++|++++|.+.+..|..+..+ ++|++|
T Consensus        79 l~~L~~L~L~~n~l~~------------------------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L  133 (477)
T 2id5_A           79 LFNLRTLGLRSNRLKL------------------------IPLGVFTGLSNLTKLDISENKIVILLDYMFQDL-YNLKSL  133 (477)
T ss_dssp             CTTCCEEECCSSCCCS------------------------CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEE
T ss_pred             CccCCEEECCCCcCCc------------------------cCcccccCCCCCCEEECCCCccccCChhHcccc-ccCCEE
Confidence            6666666666665532                        222234445555555555555544444433332 344444


Q ss_pred             EcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCcccc
Q 045139          506 NLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSG  585 (820)
Q Consensus       506 ~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  585 (820)
                      ++++|.+.+..+.                         .+..+.                      +|+.|++++|++++
T Consensus       134 ~l~~n~l~~~~~~-------------------------~~~~l~----------------------~L~~L~l~~n~l~~  166 (477)
T 2id5_A          134 EVGDNDLVYISHR-------------------------AFSGLN----------------------SLEQLTLEKCNLTS  166 (477)
T ss_dssp             EECCTTCCEECTT-------------------------SSTTCT----------------------TCCEEEEESCCCSS
T ss_pred             ECCCCccceeChh-------------------------hccCCC----------------------CCCEEECCCCcCcc
Confidence            4444444332222                         111111                      56666666666665


Q ss_pred             ccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccC-cchh
Q 045139          586 ELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIP-AWIG  664 (820)
Q Consensus       586 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~  664 (820)
                      ..+..+..+++|+.|++++|++.+..+..|..+++|++|++++|.+.+.+|.......+|++|++++|+++ .+| ..+.
T Consensus       167 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~  245 (477)
T 2id5_A          167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVR  245 (477)
T ss_dssp             CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHT
T ss_pred             cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhc
Confidence            55555666677777777777766666666666667777777766666666655555556667777776666 344 3333


Q ss_pred             cCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEE
Q 045139          665 DSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLV  744 (820)
Q Consensus       665 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  744 (820)
                       .+++|++|+|++|++++..+..+..+++|+.|++++|++++..|..|.+++.|                          
T Consensus       246 -~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--------------------------  298 (477)
T 2id5_A          246 -HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL--------------------------  298 (477)
T ss_dssp             -TCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTC--------------------------
T ss_pred             -CccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccC--------------------------
Confidence             56666666666666666666666666666666666666666666666665555                          


Q ss_pred             eeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCcccc
Q 045139          745 WKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTG  794 (820)
Q Consensus       745 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~  794 (820)
                                     +.|||++|++++..+ .+..+++|+.|+|++|.++.
T Consensus       299 ---------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          299 ---------------RVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             ---------------CEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred             ---------------CEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence                           666666666664444 45666666666666666664

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=8.7e-33  Score=312.23  Aligned_cols=321  Identities=20%  Similarity=0.201  Sum_probs=198.6

Q ss_pred             CcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcc-hhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCcc
Q 045139          270 LVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVP-KSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLE  348 (820)
Q Consensus       270 L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~  348 (820)
                      -+.++.+++.++ .+|.. +  .+++++|++++|+++.++ ..|.++++|++|++++|.+++..|..|.+++     +|+
T Consensus        13 ~~~v~c~~~~l~-~ip~~-~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-----~L~   83 (477)
T 2id5_A           13 DRAVLCHRKRFV-AVPEG-I--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF-----NLR   83 (477)
T ss_dssp             TTEEECCSCCCS-SCCSC-C--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-----TCC
T ss_pred             CCEEEeCCCCcC-cCCCC-C--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCc-----cCC
Confidence            356777777777 67765 3  356777777777777553 4577777777777777777777677776666     677


Q ss_pred             EEEcCCCCCcccCCC-CcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCC
Q 045139          349 ILQLNSNMLRGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLS  427 (820)
Q Consensus       349 ~L~L~~n~l~~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~  427 (820)
                      +|++++|.+.+..+. +..+++|++|+++          +|.+++..+..|..+++|+.|++++|.+++..+. .|.+++
T Consensus        84 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls----------~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~  152 (477)
T 2id5_A           84 TLGLRSNRLKLIPLGVFTGLSNLTKLDIS----------ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR-AFSGLN  152 (477)
T ss_dssp             EEECCSSCCCSCCTTSSTTCTTCCEEECT----------TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTT-SSTTCT
T ss_pred             EEECCCCcCCccCcccccCCCCCCEEECC----------CCccccCChhHccccccCCEEECCCCccceeChh-hccCCC
Confidence            777777666644433 4445555544322          3333333444445555555555555555443222 344444


Q ss_pred             CCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEc
Q 045139          428 RLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNL  507 (820)
Q Consensus       428 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l  507 (820)
                      +|++|++++|.+.                        +..+..+..+                         ++|+.|++
T Consensus       153 ~L~~L~l~~n~l~------------------------~~~~~~l~~l-------------------------~~L~~L~l  183 (477)
T 2id5_A          153 SLEQLTLEKCNLT------------------------SIPTEALSHL-------------------------HGLIVLRL  183 (477)
T ss_dssp             TCCEEEEESCCCS------------------------SCCHHHHTTC-------------------------TTCCEEEE
T ss_pred             CCCEEECCCCcCc------------------------ccChhHhccc-------------------------CCCcEEeC
Confidence            4444444444332                        1111222222                         34444444


Q ss_pred             CCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCcccccc
Q 045139          508 SHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGEL  587 (820)
Q Consensus       508 s~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  587 (820)
                      ++|.+.+..+..+.                         .+.                      +|+.|++++|...+.+
T Consensus       184 ~~n~i~~~~~~~~~-------------------------~l~----------------------~L~~L~l~~~~~~~~~  216 (477)
T 2id5_A          184 RHLNINAIRDYSFK-------------------------RLY----------------------RLKVLEISHWPYLDTM  216 (477)
T ss_dssp             ESCCCCEECTTCSC-------------------------SCT----------------------TCCEEEEECCTTCCEE
T ss_pred             CCCcCcEeChhhcc-------------------------cCc----------------------ccceeeCCCCcccccc
Confidence            44444332222111                         111                      6677777777666666


Q ss_pred             CcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCC
Q 045139          588 PNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSL  667 (820)
Q Consensus       588 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l  667 (820)
                      |.......+|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+. .+
T Consensus       217 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l  295 (477)
T 2id5_A          217 TPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR-GL  295 (477)
T ss_dssp             CTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBT-TC
T ss_pred             CcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhc-Cc
Confidence            66666666788888888888754445677778888888888888877777777888888888888888877777776 67


Q ss_pred             CCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccc
Q 045139          668 PDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGT  707 (820)
Q Consensus       668 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  707 (820)
                      ++|++|+|++|++++..+..|..+++|+.|++++|++...
T Consensus       296 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          296 NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             TTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             ccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence            8888888888888766666677778888888888877643

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=4.4e-33  Score=295.45  Aligned_cols=250  Identities=26%  Similarity=0.444  Sum_probs=202.8

Q ss_pred             CcEEEEcCCCcCCC--CCCcccccccCCCCceeccC-CcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEE
Q 045139          501 NLYYLNLSHNHFTG--MLPDLSQKFTAYPPEIDLSA-NSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLD  577 (820)
Q Consensus       501 ~L~~L~ls~n~l~~--~~p~~~~~~~~l~~~l~ls~-n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~  577 (820)
                      +++.|++++|.+.+  .+|..+..++.+ +.|++++ |.+.+.+|..+..+.                      +|++|+
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L-~~L~L~~~n~l~~~~p~~l~~l~----------------------~L~~L~  107 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYL-NFLYIGGINNLVGPIPPAIAKLT----------------------QLHYLY  107 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTC-SEEEEEEETTEESCCCGGGGGCT----------------------TCSEEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCC-CeeeCCCCCcccccCChhHhcCC----------------------CCCEEE
Confidence            34455555555554  444444444444 5555552 555554444333333                      788999


Q ss_pred             ccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCC-CCCEEECCCCcCc
Q 045139          578 LSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFT-QLTVLDLGHNKIS  656 (820)
Q Consensus       578 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~  656 (820)
                      +++|++++.+|..+..+++|++|++++|++++.+|..++.+++|++|++++|++++.+|..+..++ +|++|++++|+++
T Consensus       108 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~  187 (313)
T 1ogq_A          108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             EEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred             CcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence            999999888999999999999999999999988999999999999999999999989999999988 8999999999999


Q ss_pred             cccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCcccc
Q 045139          657 GIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDY  736 (820)
Q Consensus       657 ~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~  736 (820)
                      +.+|..+. .++ |++|++++|++++..|..+..+++|+.|++++|++++.+|. +..++.|                  
T Consensus       188 ~~~~~~~~-~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L------------------  246 (313)
T 1ogq_A          188 GKIPPTFA-NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNL------------------  246 (313)
T ss_dssp             EECCGGGG-GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTC------------------
T ss_pred             ccCChHHh-CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCC------------------
Confidence            89998887 566 99999999999988899999999999999999999876665 5555555                  


Q ss_pred             ccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCc
Q 045139          737 YNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNM  815 (820)
Q Consensus       737 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~  815 (820)
                                             +.|||++|++++.+| .+..+++|++|+|++|+++|.+|.. +.+++|+.+++++|+
T Consensus       247 -----------------------~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          247 -----------------------NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             -----------------------CEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             -----------------------CEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence                                   889999999999999 8999999999999999999999986 889999999999998


Q ss_pred             -Ccc
Q 045139          816 -LMR  818 (820)
Q Consensus       816 -l~g  818 (820)
                       +.|
T Consensus       303 ~lc~  306 (313)
T 1ogq_A          303 CLCG  306 (313)
T ss_dssp             EEES
T ss_pred             CccC
Confidence             555

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.5e-31  Score=293.78  Aligned_cols=242  Identities=20%  Similarity=0.251  Sum_probs=129.4

Q ss_pred             CCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEE
Q 045139          401 LSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSEL  480 (820)
Q Consensus       401 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  480 (820)
                      +++++.|++++|.++. +|...+..+++|++|++++|.+....+..+..+..|+.|++++|.+.+..|..+..+++|++|
T Consensus        44 l~~l~~l~l~~~~l~~-l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEESE-ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchhh-CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            4566777777776665 444456667777777777777665555555555555666666665555566666777777777


Q ss_pred             ecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCccccc
Q 045139          481 DVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSG  560 (820)
Q Consensus       481 ~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~  560 (820)
                      ++++|.+++ +|...+..+++|++|++++|++++..|..+..++                                    
T Consensus       123 ~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------------------------------------  165 (390)
T 3o6n_A          123 VLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT------------------------------------  165 (390)
T ss_dssp             ECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCT------------------------------------
T ss_pred             ECCCCccCc-CCHHHhcCCCCCcEEECCCCccCccChhhccCCC------------------------------------
Confidence            777777763 3433333345677777777776665554444433                                    


Q ss_pred             ccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchh
Q 045139          561 SLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVK  640 (820)
Q Consensus       561 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  640 (820)
                                 +|++|++++|++++.   .+..+++|+.|++++|.+++.     ...++|++|++++|.+... |.  .
T Consensus       166 -----------~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~--~  223 (390)
T 3o6n_A          166 -----------SLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RG--P  223 (390)
T ss_dssp             -----------TCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-EC--C
T ss_pred             -----------CCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeec-cc--c
Confidence                       344444444444422   133344444455554444421     1223445555555554432 11  1


Q ss_pred             cCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCc
Q 045139          641 SFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNIS  705 (820)
Q Consensus       641 ~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  705 (820)
                      ..++|++|++++|++++.  .++. .+++|++|++++|++++..|..+..+++|+.|++++|+++
T Consensus       224 ~~~~L~~L~l~~n~l~~~--~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  285 (390)
T 3o6n_A          224 VNVELTILKLQHNNLTDT--AWLL-NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV  285 (390)
T ss_dssp             CCSSCCEEECCSSCCCCC--GGGG-GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC
T ss_pred             ccccccEEECCCCCCccc--HHHc-CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc
Confidence            124455555555555432  2333 3555555555555555544555555555555555555554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.7e-31  Score=293.32  Aligned_cols=287  Identities=24%  Similarity=0.312  Sum_probs=188.5

Q ss_pred             cCCCCCCEEECcCCCCCCcccCcc-ccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCC
Q 045139          112 IGLQHLNYLNMKYNDFGGKQIPAF-IGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSF  190 (820)
Q Consensus       112 ~~l~~L~~L~Ls~n~l~~~~~p~~-i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~  190 (820)
                      ..+.++++|++++|.+..  +|.. +..+++|++|++++|.+++..|..++.+++|++|++++| .+....+..++++++
T Consensus        42 ~~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~  118 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPL  118 (390)
T ss_dssp             GGGCCCSEEEEESCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred             cccCCceEEEecCCchhh--CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCC
Confidence            456788999999888865  5554 678889999999999888766778888899999999888 333334445677777


Q ss_pred             CCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCC
Q 045139          191 LEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSL  270 (820)
Q Consensus       191 L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L  270 (820)
                      |++|++++|.+...+  +..++++++|++|++++|.+++..+   ..+..+ ++|++|++++|.+++.-   +... ++|
T Consensus       119 L~~L~L~~n~l~~l~--~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l-~~L~~L~l~~n~l~~~~---~~~l-~~L  188 (390)
T 3o6n_A          119 LTVLVLERNDLSSLP--RGIFHNTPKLTTLSMSNNNLERIED---DTFQAT-TSLQNLQLSSNRLTHVD---LSLI-PSL  188 (390)
T ss_dssp             CCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCBCCT---TTTSSC-TTCCEEECCSSCCSBCC---GGGC-TTC
T ss_pred             CCEEECCCCccCcCC--HHHhcCCCCCcEEECCCCccCccCh---hhccCC-CCCCEEECCCCcCCccc---cccc-ccc
Confidence            888888777776532  1235677778888887777777666   445555 77777777777776531   2223 377


Q ss_pred             cEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEE
Q 045139          271 VYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEIL  350 (820)
Q Consensus       271 ~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L  350 (820)
                      ++|++++|.+++ +     ...++|++|++++|.++.+|...  .++|++|++++|.+++.  ..+..++     +|+.|
T Consensus       189 ~~L~l~~n~l~~-~-----~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~-----~L~~L  253 (390)
T 3o6n_A          189 FHANVSYNLLST-L-----AIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYP-----GLVEV  253 (390)
T ss_dssp             SEEECCSSCCSE-E-----ECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GGGGGCT-----TCSEE
T ss_pred             ceeecccccccc-c-----CCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HHHcCCC-----CccEE
Confidence            777777777662 2     23456777777777777665432  35677777777777664  3455555     67777


Q ss_pred             EcCCCCCcccCCC-CcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCC
Q 045139          351 QLNSNMLRGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRL  429 (820)
Q Consensus       351 ~L~~n~l~~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L  429 (820)
                      ++++|.+.+..|. +..+++|++|++++|.++.           +|..+..+++|++|++++|++++ +|. .+..+++|
T Consensus       254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~~l~~L  320 (390)
T 3o6n_A          254 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-----------LNLYGQPIPTLKVLDLSHNHLLH-VER-NQPQFDRL  320 (390)
T ss_dssp             ECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-----------EECSSSCCTTCCEEECCSSCCCC-CGG-GHHHHTTC
T ss_pred             ECCCCcCCCcChhHccccccCCEEECCCCcCcc-----------cCcccCCCCCCCEEECCCCccee-cCc-cccccCcC
Confidence            7777766665555 5666666655554444332           23344556666666666666654 333 35556666


Q ss_pred             CEEeCcCCcc
Q 045139          430 TYLDLSHNSL  439 (820)
Q Consensus       430 ~~L~Ls~n~l  439 (820)
                      ++|++++|++
T Consensus       321 ~~L~L~~N~i  330 (390)
T 3o6n_A          321 ENLYLDHNSI  330 (390)
T ss_dssp             SEEECCSSCC
T ss_pred             CEEECCCCcc
Confidence            6666666665

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=1.3e-30  Score=281.44  Aligned_cols=190  Identities=26%  Similarity=0.402  Sum_probs=151.3

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      +|++|++++|.+.+..+  +..+++|++|++++|++.+..+  +..+++|+.|++++|.+.+..+  +..+++|++|+++
T Consensus       156 ~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~  229 (347)
T 4fmz_A          156 GLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIG  229 (347)
T ss_dssp             TCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECC
T ss_pred             CCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEcc
Confidence            67777777777764433  7788888888888888875333  7788889999999988886544  7888999999999


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP  731 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~  731 (820)
                      +|++++..+  +. .+++|++|++++|++++.  ..+..+++|+.|++++|++++.  +.+..++.|             
T Consensus       230 ~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L-------------  289 (347)
T 4fmz_A          230 NNKITDLSP--LA-NLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQL-------------  289 (347)
T ss_dssp             SSCCCCCGG--GT-TCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTC-------------
T ss_pred             CCccCCCcc--hh-cCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCC-------------
Confidence            999885433  54 789999999999998853  4688899999999999998853  345555555             


Q ss_pred             CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEe
Q 045139          732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLD  810 (820)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~Ld  810 (820)
                                                  +.|++++|++++..| .++.+++|+.|++++|++++..|  +..+++|++||
T Consensus       290 ----------------------------~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~  339 (347)
T 4fmz_A          290 ----------------------------NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSAD  339 (347)
T ss_dssp             ----------------------------SEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEES
T ss_pred             ----------------------------CEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceee
Confidence                                        889999999988877 88999999999999999997666  78899999999


Q ss_pred             CCCCcCc
Q 045139          811 LSKNMLM  817 (820)
Q Consensus       811 Ls~N~l~  817 (820)
                      +++|+|+
T Consensus       340 l~~N~i~  346 (347)
T 4fmz_A          340 FANQVIK  346 (347)
T ss_dssp             SSCC---
T ss_pred             hhhhccc
Confidence            9999986

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=6.8e-31  Score=304.41  Aligned_cols=277  Identities=17%  Similarity=0.190  Sum_probs=130.8

Q ss_pred             CCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEE
Q 045139          401 LSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSEL  480 (820)
Q Consensus       401 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  480 (820)
                      +.+++.+++++|.+.. +|...+..+++|++|++++|.+.+..+..+..+..|+.|++++|.+.+..|..+..+++|++|
T Consensus        50 l~~l~~l~l~~~~l~~-lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEESE-ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCCC-cCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            3455556666555554 333345555666666666665554444444444444444444444445555556666666666


Q ss_pred             ecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCccccc
Q 045139          481 DVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSG  560 (820)
Q Consensus       481 ~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~  560 (820)
                      ++++|.+++..+..+. .+++|++|++++|.+++..|..+..++.+ +.|++++|.+++..+..+.              
T Consensus       129 ~L~~n~l~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~l~--------------  192 (597)
T 3oja_B          129 VLERNDLSSLPRGIFH-NTPKLTTLSMSNNNLERIEDDTFQATTSL-QNLQLSSNRLTHVDLSLIP--------------  192 (597)
T ss_dssp             ECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCBCCTTTTTTCTTC-CEEECTTSCCSBCCGGGCT--------------
T ss_pred             EeeCCCCCCCCHHHhc-cCCCCCEEEeeCCcCCCCChhhhhcCCcC-cEEECcCCCCCCcChhhhh--------------
Confidence            6666666533333222 23566666666666665555444444333 3333333333321100000              


Q ss_pred             ccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchh
Q 045139          561 SLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVK  640 (820)
Q Consensus       561 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  640 (820)
                                 +|+.|++++|.+++     +...++|+.|++++|.+....+..   .++|+.|++++|.+++  +..+.
T Consensus       193 -----------~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~  251 (597)
T 3oja_B          193 -----------SLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLL  251 (597)
T ss_dssp             -----------TCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGG
T ss_pred             -----------hhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--Chhhc
Confidence                       44444555444442     122234555555555544322211   1344455555554443  23444


Q ss_pred             cCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccc
Q 045139          641 SFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAM  718 (820)
Q Consensus       641 ~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  718 (820)
                      .+++|++|+|++|.+++..|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++|+++ .+|..+..++.|
T Consensus       252 ~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L  326 (597)
T 3oja_B          252 NYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL  326 (597)
T ss_dssp             GCTTCSEEECCSSCCCEEESGGGT-TCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred             cCCCCCEEECCCCccCCCCHHHhc-CccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCC
Confidence            444455555555554444444444 34444444444444443 3334444444444444444444 344434333333

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=3.4e-30  Score=278.27  Aligned_cols=302  Identities=25%  Similarity=0.380  Sum_probs=184.0

Q ss_pred             CCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCcc
Q 045139          269 SLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLE  348 (820)
Q Consensus       269 ~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~  348 (820)
                      +|++|++++|.+. .+|.  +..+++|++|++++|+++.++. +..+++|++|++++|.+++.  ..+..++     +|+
T Consensus        45 ~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~-----~L~  113 (347)
T 4fmz_A           45 SITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDI--SALQNLT-----NLR  113 (347)
T ss_dssp             TCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCT-----TCS
T ss_pred             cccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCc--hHHcCCC-----cCC
Confidence            7777777777776 4553  6677777777777777777665 77777777777777777663  2355555     666


Q ss_pred             EEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCC
Q 045139          349 ILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSR  428 (820)
Q Consensus       349 ~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~  428 (820)
                      +|++++|.+.+. +.+..+++|+.|++++          |.....++ .+..+++|++|++++|.+.+.. .  +..+++
T Consensus       114 ~L~l~~n~i~~~-~~~~~l~~L~~L~l~~----------n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~-~--~~~l~~  178 (347)
T 4fmz_A          114 ELYLNEDNISDI-SPLANLTKMYSLNLGA----------NHNLSDLS-PLSNMTGLNYLTVTESKVKDVT-P--IANLTD  178 (347)
T ss_dssp             EEECTTSCCCCC-GGGTTCTTCCEEECTT----------CTTCCCCG-GGTTCTTCCEEECCSSCCCCCG-G--GGGCTT
T ss_pred             EEECcCCcccCc-hhhccCCceeEEECCC----------CCCccccc-chhhCCCCcEEEecCCCcCCch-h--hccCCC
Confidence            666666666532 2244444444443332          21111111 2444555555555555544321 1  444444


Q ss_pred             CCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcC
Q 045139          429 LTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLS  508 (820)
Q Consensus       429 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls  508 (820)
                      |++|++++|.+                                                .+..+  + ..+++|+.++++
T Consensus       179 L~~L~l~~n~l------------------------------------------------~~~~~--~-~~l~~L~~L~l~  207 (347)
T 4fmz_A          179 LYSLSLNYNQI------------------------------------------------EDISP--L-ASLTSLHYFTAY  207 (347)
T ss_dssp             CSEEECTTSCC------------------------------------------------CCCGG--G-GGCTTCCEEECC
T ss_pred             CCEEEccCCcc------------------------------------------------ccccc--c-cCCCccceeecc
Confidence            44444444443                                                32211  1 112455555555


Q ss_pred             CCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccC
Q 045139          509 HNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELP  588 (820)
Q Consensus       509 ~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p  588 (820)
                      +|.+.+..+  +..++                                               +|++|++++|.+++..+
T Consensus       208 ~n~l~~~~~--~~~~~-----------------------------------------------~L~~L~l~~n~l~~~~~  238 (347)
T 4fmz_A          208 VNQITDITP--VANMT-----------------------------------------------RLNSLKIGNNKITDLSP  238 (347)
T ss_dssp             SSCCCCCGG--GGGCT-----------------------------------------------TCCEEECCSSCCCCCGG
T ss_pred             cCCCCCCch--hhcCC-----------------------------------------------cCCEEEccCCccCCCcc
Confidence            555443322  11111                                               56677777777664333


Q ss_pred             cccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCC
Q 045139          589 NCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLP  668 (820)
Q Consensus       589 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~  668 (820)
                        +..+++|++|++++|++++.  ..+..+++|++|++++|++++.  ..+..+++|++|++++|++++..|..+. .++
T Consensus       239 --~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~  311 (347)
T 4fmz_A          239 --LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIG-GLT  311 (347)
T ss_dssp             --GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHH-TCT
T ss_pred             --hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhh-ccc
Confidence              67777778888888777753  4577778888888888887754  4577888888888888888877777776 688


Q ss_pred             CccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCc
Q 045139          669 DLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNIS  705 (820)
Q Consensus       669 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  705 (820)
                      +|++|++++|++++..|  +..+++|+.|++++|+++
T Consensus       312 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          312 NLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             TCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             cCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            88888888888886655  777888888888888775

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=8e-31  Score=303.83  Aligned_cols=332  Identities=22%  Similarity=0.199  Sum_probs=198.1

Q ss_pred             CCCCCCCCCCCCCCcc----cCceEecCC----C------------CcEEEEEcCCCCCCCCcccccccccCCCCCCEEE
Q 045139           62 HLSSWGNEDDKKDCCK----WRGVSCSNQ----T------------GHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLN  121 (820)
Q Consensus        62 ~~~~W~~~~~~~~~c~----w~gv~c~~~----~------------~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~  121 (820)
                      .+++|.   .+.+||.    |.++.|+..    .            ..++.+++++   +.+.+..+..+.++++|++|+
T Consensus         8 ~l~~~~---~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~---~~l~~lp~~~~~~l~~L~~L~   81 (597)
T 3oja_B            8 NVKPRQ---PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN---STMRKLPAALLDSFRQVELLN   81 (597)
T ss_dssp             ---CCC---SEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESS---CEESEECTHHHHHCCCCSEEE
T ss_pred             cccCCC---CCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeC---CCCCCcCHHHHccCCCCcEEE
Confidence            456787   4667774    666555310    0            1234455554   333332223456677777777


Q ss_pred             CcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCeeeCCCccC
Q 045139          122 MKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNL  201 (820)
Q Consensus       122 Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l  201 (820)
                      |++|.+.+. .|..|+.+++|++|+|++|.+++..|..|+++++|++|+|++| .+.......++++++|++|++++|.+
T Consensus        82 L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l  159 (597)
T 3oja_B           82 LNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNL  159 (597)
T ss_dssp             CTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCCCCCC-ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcC
Confidence            777777663 4556677777777777777777666666677777777777776 22222222356677777777777766


Q ss_pred             CCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEEEccCCccc
Q 045139          202 GEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQ  281 (820)
Q Consensus       202 ~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~  281 (820)
                      .+.  .+..++.+++|++|++++|.+++...      ..+ ++|+.|++++|.+++..      ..++|++|++++|.++
T Consensus       160 ~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~------~~l-~~L~~L~l~~n~l~~l~------~~~~L~~L~ls~n~l~  224 (597)
T 3oja_B          160 ERI--EDDTFQATTSLQNLQLSSNRLTHVDL------SLI-PSLFHANVSYNLLSTLA------IPIAVEELDASHNSIN  224 (597)
T ss_dssp             CBC--CTTTTTTCTTCCEEECTTSCCSBCCG------GGC-TTCSEEECCSSCCSEEE------CCTTCSEEECCSSCCC
T ss_pred             CCC--ChhhhhcCCcCcEEECcCCCCCCcCh------hhh-hhhhhhhcccCcccccc------CCchhheeeccCCccc
Confidence            653  33456667777777777776665422      223 66677777777665421      1226677777777666


Q ss_pred             CCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccC
Q 045139          282 GPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSL  361 (820)
Q Consensus       282 g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~  361 (820)
                       .++.. +  .++|++|++++|.++.. ..+..+++|++|++++|.+++..|..|..++     +|+.|++++|.+++..
T Consensus       225 -~~~~~-~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~l~  294 (597)
T 3oja_B          225 -VVRGP-V--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-----RLERLYISNNRLVALN  294 (597)
T ss_dssp             -EEECS-C--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCS-----SCCEEECTTSCCCEEE
T ss_pred             -ccccc-c--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCcc-----CCCEEECCCCCCCCCC
Confidence             34433 1  25677777777776654 4566677777777777777776666666666     6777777777766543


Q ss_pred             CCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCcccc
Q 045139          362 PDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLIL  441 (820)
Q Consensus       362 p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~  441 (820)
                      +.+..+++|+.|++++|          .++ .+|..+..+++|+.|++++|.+++. +   +..+++|++|++++|++.+
T Consensus       295 ~~~~~l~~L~~L~Ls~N----------~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~---~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          295 LYGQPIPTLKVLDLSHN----------HLL-HVERNQPQFDRLENLYLDHNSIVTL-K---LSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             CSSSCCTTCCEEECCSS----------CCC-CCGGGHHHHTTCSEEECCSSCCCCC-C---CCTTCCCSEEECCSSCEEH
T ss_pred             cccccCCCCcEEECCCC----------CCC-ccCcccccCCCCCEEECCCCCCCCc-C---hhhcCCCCEEEeeCCCCCC
Confidence            33555666665544433          333 4555566667777777777776653 2   4556667777777776654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=6.6e-32  Score=288.06  Aligned_cols=281  Identities=18%  Similarity=0.218  Sum_probs=201.6

Q ss_pred             cCCHHHHHHHHHhhccCC-CCCCCCCCCCCC-CCCCCCcccCceEec--------CCCCcEEEEEcCCCCCCCCcccccc
Q 045139           40 KCIERERQALLMFKQGLI-DEYGHLSSWGNE-DDKKDCCKWRGVSCS--------NQTGHVTMLNLQFRSYMPLRGNISS  109 (820)
Q Consensus        40 ~~~~~~~~~l~~~~~~~~-~~~~~~~~W~~~-~~~~~~c~w~gv~c~--------~~~~~v~~L~L~~~~~~~l~g~i~~  109 (820)
                      .+..+|++||++||+++. |+.+...+|... ....++|.|.|++|.        ....+|+.|+|++   +.++ .+|+
T Consensus        23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~---n~l~-~lp~   98 (328)
T 4fcg_A           23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS---VPLP-QFPD   98 (328)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES---SCCS-SCCS
T ss_pred             ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccC---CCch-hcCh
Confidence            456789999999999884 676667788310 136789999999994        2346899999998   7777 7888


Q ss_pred             cccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCC
Q 045139          110 SLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLS  189 (820)
Q Consensus       110 ~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~  189 (820)
                      .++++++|++|+|++|.+. . +|..++++++|++|+|++|.++ .+|..++++++|++|++++|. .....+..+..  
T Consensus        99 ~l~~l~~L~~L~L~~n~l~-~-lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~-~~~~~p~~~~~--  172 (328)
T 4fcg_A           99 QAFRLSHLQHMTIDAAGLM-E-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACP-ELTELPEPLAS--  172 (328)
T ss_dssp             CGGGGTTCSEEEEESSCCC-C-CCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEET-TCCCCCSCSEE--
T ss_pred             hhhhCCCCCEEECCCCCcc-c-hhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCC-CccccChhHhh--
Confidence            8999999999999999998 3 8999999999999999999999 889899999999999999872 22222222221  


Q ss_pred             CCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCC
Q 045139          190 FLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSS  269 (820)
Q Consensus       190 ~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~  269 (820)
                          .           .+...+..+++|++|++++|.++ .+|   ..+..+ ++|++|++++|.+++ +|..+.... +
T Consensus       173 ----~-----------~~~~~~~~l~~L~~L~L~~n~l~-~lp---~~l~~l-~~L~~L~L~~N~l~~-l~~~l~~l~-~  230 (328)
T 4fcg_A          173 ----T-----------DASGEHQGLVNLQSLRLEWTGIR-SLP---ASIANL-QNLKSLKIRNSPLSA-LGPAIHHLP-K  230 (328)
T ss_dssp             ----E-----------C-CCCEEESTTCCEEEEEEECCC-CCC---GGGGGC-TTCCEEEEESSCCCC-CCGGGGGCT-T
T ss_pred             ----c-----------cchhhhccCCCCCEEECcCCCcC-cch---HhhcCC-CCCCEEEccCCCCCc-CchhhccCC-C
Confidence                0           00112334666666666666665 334   334555 666666666666663 444455544 7


Q ss_pred             CcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCC-CcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCcc
Q 045139          270 LVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLV-SVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLE  348 (820)
Q Consensus       270 L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~-~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~  348 (820)
                      |++|++++|.+.+.+|.. ++.+++|++|++++|.+. .+|..+.++++|++|++++|++.+.+|..+..++     +|+
T Consensus       231 L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~-----~L~  304 (328)
T 4fcg_A          231 LEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP-----ANC  304 (328)
T ss_dssp             CCEEECTTCTTCCBCCCC-TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSC-----TTC
T ss_pred             CCEEECcCCcchhhhHHH-hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhcc-----Cce
Confidence            777777777777677765 777777777777776655 6677777777777777777777777777777777     777


Q ss_pred             EEEcCCCCCc
Q 045139          349 ILQLNSNMLR  358 (820)
Q Consensus       349 ~L~L~~n~l~  358 (820)
                      .+++..+.+.
T Consensus       305 ~l~l~~~~~~  314 (328)
T 4fcg_A          305 IILVPPHLQA  314 (328)
T ss_dssp             EEECCGGGSC
T ss_pred             EEeCCHHHHH
Confidence            7777766554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.3e-32  Score=309.54  Aligned_cols=210  Identities=16%  Similarity=0.131  Sum_probs=118.8

Q ss_pred             cccEEEccCCccccc----cCcccccCCCCcEEEcCCCeeeecC-----CCCcccccCCcEEeccCCccccc----CCcc
Q 045139          572 HFRYLDLSDNLLSGE----LPNCSKNWQKLTVLNLANNKFSGKI-----PDSMDFNCMMLSLHLRNNSFIGE----LPSS  638 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~-----p~~l~~l~~L~~L~Ls~N~l~~~----~p~~  638 (820)
                      +|++|++++|.+++.    ++..+..+++|++|++++|++.+..     +..+..+++|++|++++|.+++.    ++..
T Consensus       200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  279 (461)
T 1z7x_W          200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV  279 (461)
T ss_dssp             CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence            445555555555432    3445556666666666666665422     11222456677777777766653    4556


Q ss_pred             hhcCCCCCEEECCCCcCccccCcchhc----CCCCccEEEcCccccccc----CCcccCCCCCCCEEeCcCCCCccccch
Q 045139          639 VKSFTQLTVLDLGHNKISGIIPAWIGD----SLPDLVVLSLRSNNFHGR----VPVQVCHLQRIQVLDLSQNNISGTVPQ  710 (820)
Q Consensus       639 l~~l~~L~~L~Ls~N~l~~~~p~~l~~----~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~  710 (820)
                      +..+++|++|++++|++++..+..+..    ..++|++|++++|.+++.    +|..+..+++|+.|++++|++++..+.
T Consensus       280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  359 (461)
T 1z7x_W          280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR  359 (461)
T ss_dssp             HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence            666777777777777776543333321    225777777777777654    445556667777777777777655444


Q ss_pred             hccccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCee----cCC-CcccccCCCEE
Q 045139          711 CLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYG----EIP-EVTSLVGLISL  785 (820)
Q Consensus       711 ~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~----~ip-~l~~l~~L~~L  785 (820)
                      .+...-.                                    ...+.|+.|++++|++++    .+| .+..+++|++|
T Consensus       360 ~l~~~l~------------------------------------~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L  403 (461)
T 1z7x_W          360 ELCQGLG------------------------------------QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL  403 (461)
T ss_dssp             HHHHHHT------------------------------------STTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred             HHHHHHc------------------------------------CCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEE
Confidence            4332100                                    001233677777777765    566 66677777777


Q ss_pred             eCCCCccccCCccccc-----CCCCCCeEeCCCCcCc
Q 045139          786 NLSKNSLTGPIPSKIG-----GLTLLNSLDLSKNMLM  817 (820)
Q Consensus       786 ~Ls~N~l~~~ip~~l~-----~l~~L~~LdLs~N~l~  817 (820)
                      ++++|++++.....+.     ...+|+.|++.++.+.
T Consensus       404 ~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~  440 (461)
T 1z7x_W          404 DLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  440 (461)
T ss_dssp             ECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             ECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence            7777777644211111     1234566666555543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=2.4e-29  Score=269.55  Aligned_cols=131  Identities=19%  Similarity=0.169  Sum_probs=98.5

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      +|++|++++|.+++..+..+..+++|++|++++|++++..+..++.+++|++|++++|+++ .+|..+..+++|++|+++
T Consensus       194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~  272 (332)
T 2ft3_A          194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH  272 (332)
T ss_dssp             SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECC
T ss_pred             CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECC
Confidence            5677777777777666677788888888888888888777777888888888888888887 677778888888888888


Q ss_pred             CCcCccccCcchhc-----CCCCccEEEcCccccc--ccCCcccCCCCCCCEEeCcCCC
Q 045139          652 HNKISGIIPAWIGD-----SLPDLVVLSLRSNNFH--GRVPVQVCHLQRIQVLDLSQNN  703 (820)
Q Consensus       652 ~N~l~~~~p~~l~~-----~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~  703 (820)
                      +|++++..+..+..     ..+.|+.|++++|++.  +..|..+..+++|+.+++++|+
T Consensus       273 ~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            88888554444431     1367888888888877  5677788888888888888875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=2.1e-28  Score=262.18  Aligned_cols=291  Identities=24%  Similarity=0.317  Sum_probs=193.8

Q ss_pred             CCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcch-hhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCc
Q 045139          269 SLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTL  347 (820)
Q Consensus       269 ~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L  347 (820)
                      +++.++++++.++ .+|.. +  .+++++|++++|+++.++. .|.++++|++|++++|++++..|..|..++     +|
T Consensus        32 ~l~~l~~~~~~l~-~lp~~-~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L  102 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKD-L--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV-----KL  102 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCS-C--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT-----TC
T ss_pred             CCeEEEecCCCcc-ccCcc-C--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC-----CC
Confidence            6788888888877 67765 3  3577778888888776655 577777777777777777777677776666     67


Q ss_pred             cEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCC
Q 045139          348 EILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLS  427 (820)
Q Consensus       348 ~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~  427 (820)
                      ++|++++|.++. +|.                                 .+.  ++|++|++++|.+++. +...+.+++
T Consensus       103 ~~L~Ls~n~l~~-l~~---------------------------------~~~--~~L~~L~l~~n~l~~~-~~~~~~~l~  145 (330)
T 1xku_A          103 ERLYLSKNQLKE-LPE---------------------------------KMP--KTLQELRVHENEITKV-RKSVFNGLN  145 (330)
T ss_dssp             CEEECCSSCCSB-CCS---------------------------------SCC--TTCCEEECCSSCCCBB-CHHHHTTCT
T ss_pred             CEEECCCCcCCc-cCh---------------------------------hhc--ccccEEECCCCccccc-CHhHhcCCc
Confidence            777776666652 222                                 221  4666677777766653 333566677


Q ss_pred             CCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEc
Q 045139          428 RLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNL  507 (820)
Q Consensus       428 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l  507 (820)
                      +|++|++++|.+...                      +..+..+..++                         +|++|++
T Consensus       146 ~L~~L~l~~n~l~~~----------------------~~~~~~~~~l~-------------------------~L~~L~l  178 (330)
T 1xku_A          146 QMIVVELGTNPLKSS----------------------GIENGAFQGMK-------------------------KLSYIRI  178 (330)
T ss_dssp             TCCEEECCSSCCCGG----------------------GBCTTGGGGCT-------------------------TCCEEEC
T ss_pred             cccEEECCCCcCCcc----------------------CcChhhccCCC-------------------------CcCEEEC
Confidence            777777776665310                      01122233333                         4444444


Q ss_pred             CCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCcccccc
Q 045139          508 SHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGEL  587 (820)
Q Consensus       508 s~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  587 (820)
                      ++|.+++. |...                     +                            .+|++|++++|++++..
T Consensus       179 ~~n~l~~l-~~~~---------------------~----------------------------~~L~~L~l~~n~l~~~~  208 (330)
T 1xku_A          179 ADTNITTI-PQGL---------------------P----------------------------PSLTELHLDGNKITKVD  208 (330)
T ss_dssp             CSSCCCSC-CSSC---------------------C----------------------------TTCSEEECTTSCCCEEC
T ss_pred             CCCccccC-Cccc---------------------c----------------------------ccCCEEECCCCcCCccC
Confidence            44443321 1100                     0                            06777888888887777


Q ss_pred             CcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhc--
Q 045139          588 PNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGD--  665 (820)
Q Consensus       588 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~--  665 (820)
                      |..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..  
T Consensus       209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~  287 (330)
T 1xku_A          209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG  287 (330)
T ss_dssp             TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS
T ss_pred             HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcc
Confidence            778888888888888888888777778888888888888888887 67778888888888888888888544444421  


Q ss_pred             ---CCCCccEEEcCcccccc--cCCcccCCCCCCCEEeCcCCC
Q 045139          666 ---SLPDLVVLSLRSNNFHG--RVPVQVCHLQRIQVLDLSQNN  703 (820)
Q Consensus       666 ---~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~Ls~N~  703 (820)
                         ..+.++.|++++|++..  ..|..+..+++++.+++++|+
T Consensus       288 ~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          288 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             cccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence               13678888888888753  556778888888888888874

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=4.1e-29  Score=267.77  Aligned_cols=287  Identities=20%  Similarity=0.239  Sum_probs=214.9

Q ss_pred             CCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEec
Q 045139          403 QLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDV  482 (820)
Q Consensus       403 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  482 (820)
                      +++.++++++.++. +|.. +  .++|++|++++|.+.                        +..|..+..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~~-ip~~-~--~~~l~~L~l~~n~i~------------------------~~~~~~~~~l~~L~~L~L   85 (332)
T 2ft3_A           34 HLRVVQCSDLGLKA-VPKE-I--SPDTTLLDLQNNDIS------------------------ELRKDDFKGLQHLYALVL   85 (332)
T ss_dssp             ETTEEECCSSCCSS-CCSC-C--CTTCCEEECCSSCCC------------------------EECTTTTTTCTTCCEEEC
T ss_pred             cCCEEECCCCCccc-cCCC-C--CCCCeEEECCCCcCC------------------------ccCHhHhhCCCCCcEEEC
Confidence            46666666666654 3331 1  245555555555543                        233445666777777777


Q ss_pred             CCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCccccccc
Q 045139          483 SAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSL  562 (820)
Q Consensus       483 ~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~  562 (820)
                      ++|.+++..|..+..+ ++|++|++++|+++...+.                          ..                
T Consensus        86 ~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~--------------------------~~----------------  122 (332)
T 2ft3_A           86 VNNKISKIHEKAFSPL-RKLQKLYISKNHLVEIPPN--------------------------LP----------------  122 (332)
T ss_dssp             CSSCCCEECGGGSTTC-TTCCEEECCSSCCCSCCSS--------------------------CC----------------
T ss_pred             CCCccCccCHhHhhCc-CCCCEEECCCCcCCccCcc--------------------------cc----------------
Confidence            7777766666655543 5677777777766532111                          00                


Q ss_pred             chhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeee--ecCCCCcccccCCcEEeccCCcccccCCcchh
Q 045139          563 SFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFS--GKIPDSMDFNCMMLSLHLRNNSFIGELPSSVK  640 (820)
Q Consensus       563 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  640 (820)
                              .+|++|++++|++++..+..+.++++|++|++++|+++  +..|..+..+ +|++|++++|++++ +|..+.
T Consensus       123 --------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~  192 (332)
T 2ft3_A          123 --------SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP  192 (332)
T ss_dssp             --------TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC
T ss_pred             --------ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc
Confidence                    07889999999998776777899999999999999986  3677888888 89999999999986 565543


Q ss_pred             cCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccc
Q 045139          641 SFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTA  720 (820)
Q Consensus       641 ~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  720 (820)
                        ++|++|++++|++++..|..+. .+++|++|++++|++++..|..+..+++|+.|++++|+++ .+|..+.+++.|  
T Consensus       193 --~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L--  266 (332)
T 2ft3_A          193 --ETLNELHLDHNKIQAIELEDLL-RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLL--  266 (332)
T ss_dssp             --SSCSCCBCCSSCCCCCCTTSST-TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTC--
T ss_pred             --CCCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccC--
Confidence              7899999999999977777777 7999999999999999888888999999999999999998 788888877777  


Q ss_pred             cccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-Cccc------ccCCCEEeCCCCccc
Q 045139          721 NKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTS------LVGLISLNLSKNSLT  793 (820)
Q Consensus       721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~------l~~L~~L~Ls~N~l~  793 (820)
                                                             +.||+++|++++..+ .+..      ...|+.|++++|.+.
T Consensus       267 ---------------------------------------~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          267 ---------------------------------------QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             ---------------------------------------CEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             ---------------------------------------CEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence                                                   889999999985554 5554      367899999999988


Q ss_pred             --cCCcccccCCCCCCeEeCCCCc
Q 045139          794 --GPIPSKIGGLTLLNSLDLSKNM  815 (820)
Q Consensus       794 --~~ip~~l~~l~~L~~LdLs~N~  815 (820)
                        +..|..|..+++|+.+++++|+
T Consensus       308 ~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          308 YWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GGGSCGGGGTTBCCSTTEEC----
T ss_pred             ccccCcccccccchhhhhhccccc
Confidence              6788889999999999999985

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=3.4e-32  Score=306.24  Aligned_cols=206  Identities=18%  Similarity=0.152  Sum_probs=163.6

Q ss_pred             cccEEEccCCccccccCcccc-----cCCCCcEEEcCCCeeeec----CCCCcccccCCcEEeccCCcccccC-----Cc
Q 045139          572 HFRYLDLSDNLLSGELPNCSK-----NWQKLTVLNLANNKFSGK----IPDSMDFNCMMLSLHLRNNSFIGEL-----PS  637 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~-----p~  637 (820)
                      +|++|++++|.+++..+..+.     ..++|++|++++|++++.    ++..+..+++|++|++++|.+.+..     +.
T Consensus       171 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~  250 (461)
T 1z7x_W          171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPG  250 (461)
T ss_dssp             TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred             CCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHH
Confidence            677888888877654444333     356999999999999863    5777888999999999999987643     22


Q ss_pred             chhcCCCCCEEECCCCcCccc----cCcchhcCCCCccEEEcCcccccccCCcccC-----CCCCCCEEeCcCCCCccc-
Q 045139          638 SVKSFTQLTVLDLGHNKISGI----IPAWIGDSLPDLVVLSLRSNNFHGRVPVQVC-----HLQRIQVLDLSQNNISGT-  707 (820)
Q Consensus       638 ~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~-----~l~~L~~L~Ls~N~l~~~-  707 (820)
                      .+..+++|++|++++|++++.    ++..+. .+++|++|++++|++.+..+..+.     ..++|+.|++++|++++. 
T Consensus       251 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  329 (461)
T 1z7x_W          251 LLHPSSRLRTLWIWECGITAKGCGDLCRVLR-AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC  329 (461)
T ss_dssp             HTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred             HhcCCCCceEEECcCCCCCHHHHHHHHHHHh-hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH
Confidence            233589999999999999864    677776 689999999999999765444333     236999999999999865 


Q ss_pred             ---cchhccccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-Cccc-----
Q 045139          708 ---VPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTS-----  778 (820)
Q Consensus       708 ---~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~-----  778 (820)
                         +|..+..++.|                                         +.||+++|++++..+ .+..     
T Consensus       330 ~~~l~~~l~~~~~L-----------------------------------------~~L~Ls~n~i~~~~~~~l~~~l~~~  368 (461)
T 1z7x_W          330 CSHFSSVLAQNRFL-----------------------------------------LELQISNNRLEDAGVRELCQGLGQP  368 (461)
T ss_dssp             HHHHHHHHHHCSSC-----------------------------------------CEEECCSSBCHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHhhCCCc-----------------------------------------cEEEccCCccccccHHHHHHHHcCC
Confidence               44555555555                                         899999999987655 5543     


Q ss_pred             ccCCCEEeCCCCcccc----CCcccccCCCCCCeEeCCCCcCccc
Q 045139          779 LVGLISLNLSKNSLTG----PIPSKIGGLTLLNSLDLSKNMLMRA  819 (820)
Q Consensus       779 l~~L~~L~Ls~N~l~~----~ip~~l~~l~~L~~LdLs~N~l~g~  819 (820)
                      .++|++|++++|++++    .+|..+..+++|++||+++|++++.
T Consensus       369 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          369 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             CCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            6799999999999996    7899999999999999999999763

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=1.5e-28  Score=263.13  Aligned_cols=267  Identities=18%  Similarity=0.219  Sum_probs=192.8

Q ss_pred             CccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccC
Q 045139          476 KFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFK  555 (820)
Q Consensus       476 ~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~  555 (820)
                      .++.|++++|.+++..+..+..+ ++|++|++++|++++..|..+..++.+ +.|++++|.++ .+|....         
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~-~l~~~~~---------  120 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNL-KNLHTLILINNKISKISPGAFAPLVKL-ERLYLSKNQLK-ELPEKMP---------  120 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTC-TTCCEEECCSSCCCCBCTTTTTTCTTC-CEEECCSSCCS-BCCSSCC---------
T ss_pred             CCeEEECCCCcCCEeChhhhccC-CCCCEEECCCCcCCeeCHHHhcCCCCC-CEEECCCCcCC-ccChhhc---------
Confidence            44444444444444333333322 345555555555554444444444444 45555555444 2222110         


Q ss_pred             cccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeee--cCCCCcccccCCcEEeccCCcccc
Q 045139          556 NMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSG--KIPDSMDFNCMMLSLHLRNNSFIG  633 (820)
Q Consensus       556 n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~  633 (820)
                                     .+|++|++++|.+++..+..+.++++|++|++++|++..  ..+..+..+++|++|++++|.+++
T Consensus       121 ---------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (330)
T 1xku_A          121 ---------------KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  185 (330)
T ss_dssp             ---------------TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             ---------------ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence                           078889999999987777788899999999999999863  677888899999999999999885


Q ss_pred             cCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhcc
Q 045139          634 ELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLN  713 (820)
Q Consensus       634 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  713 (820)
                       +|..+.  ++|++|++++|++++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|+++ .+|..+.
T Consensus       186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~  260 (330)
T 1xku_A          186 -IPQGLP--PSLTELHLDGNKITKVDAASLK-GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA  260 (330)
T ss_dssp             -CCSSCC--TTCSEEECTTSCCCEECTGGGT-TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred             -CCcccc--ccCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence             555443  7899999999999987788887 7899999999999999888888889999999999999998 7888777


Q ss_pred             ccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-Cccc------ccCCCEEe
Q 045139          714 NLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTS------LVGLISLN  786 (820)
Q Consensus       714 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~------l~~L~~L~  786 (820)
                      .++.|                                         +.|++++|++++..+ .+..      ...|+.|+
T Consensus       261 ~l~~L-----------------------------------------~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~  299 (330)
T 1xku_A          261 DHKYI-----------------------------------------QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS  299 (330)
T ss_dssp             TCSSC-----------------------------------------CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEE
T ss_pred             cCCCc-----------------------------------------CEEECCCCcCCccChhhcCCcccccccccccceE
Confidence            77766                                         889999999985544 5543      37889999


Q ss_pred             CCCCcccc--CCcccccCCCCCCeEeCCCCc
Q 045139          787 LSKNSLTG--PIPSKIGGLTLLNSLDLSKNM  815 (820)
Q Consensus       787 Ls~N~l~~--~ip~~l~~l~~L~~LdLs~N~  815 (820)
                      +++|.+..  ..|..|..+..++.+||++|+
T Consensus       300 l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          300 LFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             eecCcccccccCccccccccceeEEEecccC
Confidence            99999863  567889999999999999985

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=2.7e-31  Score=308.83  Aligned_cols=465  Identities=15%  Similarity=0.089  Sum_probs=264.1

Q ss_pred             CCCcccCceEecCCCCcEEEEEcCCCCCCCCcccccccccCCCCCCEEECcCCCCC---CcccCcccc------------
Q 045139           73 KDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFG---GKQIPAFIG------------  137 (820)
Q Consensus        73 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~---~~~~p~~i~------------  137 (820)
                      .-|++|.++.+.  ..+  .+.+..    ......+..+.++++|++|+++++...   +. +|..++            
T Consensus        39 ~vck~W~~~~~~--~~~--~l~~~~----~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~  109 (592)
T 3ogk_B           39 LVCRRWFKIDSE--TRE--HVTMAL----CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNL-IPENWGGYVTPWVTEISN  109 (592)
T ss_dssp             TSCHHHHHHHHH--HCC--EEEESC----GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTC-SCTTSCCBCHHHHHHHHH
T ss_pred             HHhHHHHHhhhc--ccc--EEEEee----ccccChHHHHHhCCCCeEEEecCCcchhhccc-ccccccccchHHHHHHHh
Confidence            346689888543  112  223332    223344556778999999999885421   11 343333            


Q ss_pred             CCCCCCEEeccCCCCCCCCCccCCCC--CCCcEEeCCCCccccccchh-hccCCCCCCeeeCCCccCCCCc-c-HHHHhC
Q 045139          138 SLKNIRHLDLSNAGFTGRVPYQLGNL--TSLQYLDLSFNFDMLSKKLE-WLSQLSFLEYVRLNQVNLGEAT-D-WLQVVS  212 (820)
Q Consensus       138 ~l~~L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~Ls~n~~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~-~-~~~~l~  212 (820)
                      .+++|++|+|++|.+++..+..++..  .+|++|++++|......... ...++++|++|++++|.+.+.. . ++....
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            78999999999998887777667663  44999999988432222232 2347889999999999876542 1 455667


Q ss_pred             CCCCCCEEEcCCCCCCCCCcccccc-ccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEEEccCCccc---CCCCCCC
Q 045139          213 QLPSLTELQLRGCNLPSVIASSSVS-FSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQ---GPIPDSA  288 (820)
Q Consensus       213 ~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~---g~ip~~~  288 (820)
                      .+++|++|++++|.+++.....+.. +.++ ++|++|++++|.+.+ ++..+.... +|++|+++.....   +..+.. 
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~~~~-l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~-  265 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNC-RSLVSVKVGDFEILE-LVGFFKAAA-NLEEFCGGSLNEDIGMPEKYMN-  265 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHC-TTCCEEECSSCBGGG-GHHHHHHCT-TCCEEEECBCCCCTTCTTSSSC-
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhC-CCCcEEeccCccHHH-HHHHHhhhh-HHHhhcccccccccchHHHHHH-
Confidence            7889999999988887443322222 2334 888888888888775 555555554 8888888753322   122233 


Q ss_pred             CCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcch-hhhhhcccCCcCCccEEEcCCCCCcccCCCCcCc
Q 045139          289 FPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLP-NLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLF  367 (820)
Q Consensus       289 l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l  367 (820)
                      +..+++|+.|+++++....+|..+..+++|++|++++|.+++... ..+..++     +|+.|+++ +.+          
T Consensus       266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~-----~L~~L~L~-~~~----------  329 (592)
T 3ogk_B          266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP-----NLEVLETR-NVI----------  329 (592)
T ss_dssp             CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT-----TCCEEEEE-GGG----------
T ss_pred             hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc-----CCCEEecc-Ccc----------
Confidence            566677777777776555666666666677777776666544322 1122222     23333322 111          


Q ss_pred             CCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCC-----------CcCccccCHHHhhcCCCCCEEeCcC
Q 045139          368 SSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVAS-----------NSLKGMITEAHLSNLSRLTYLDLSH  436 (820)
Q Consensus       368 ~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-----------n~l~~~~~~~~l~~l~~L~~L~Ls~  436 (820)
                                            ..+.++.....+++|++|++++           |.+++.........+++|++|+++.
T Consensus       330 ----------------------~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~  387 (592)
T 3ogk_B          330 ----------------------GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV  387 (592)
T ss_dssp             ----------------------HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE
T ss_pred             ----------------------CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec
Confidence                                  1112223334456666666662           3443321111233455555555544


Q ss_pred             CccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcC----CCcC
Q 045139          437 NSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLS----HNHF  512 (820)
Q Consensus       437 n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls----~n~l  512 (820)
                      |                                                .+++..+..+...+++|+.|+++    .|.+
T Consensus       388 ~------------------------------------------------~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l  419 (592)
T 3ogk_B          388 S------------------------------------------------DITNESLESIGTYLKNLCDFRLVLLDREERI  419 (592)
T ss_dssp             S------------------------------------------------CCCHHHHHHHHHHCCSCCEEEEEECSCCSCC
T ss_pred             C------------------------------------------------CccHHHHHHHHhhCCCCcEEEEeecCCCccc
Confidence            4                                                34333333333333456666654    3333


Q ss_pred             CCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCc--cccccCcc
Q 045139          513 TGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNL--LSGELPNC  590 (820)
Q Consensus       513 ~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~p~~  590 (820)
                      ++...+.  .                                       ++...... .+|++|++++|.  +++..+..
T Consensus       420 ~~~p~~~--~---------------------------------------~~~~~~~~-~~L~~L~L~~~~~~l~~~~~~~  457 (592)
T 3ogk_B          420 TDLPLDN--G---------------------------------------VRSLLIGC-KKLRRFAFYLRQGGLTDLGLSY  457 (592)
T ss_dssp             SSCCCHH--H---------------------------------------HHHHHHHC-TTCCEEEEECCGGGCCHHHHHH
T ss_pred             cCchHHH--H---------------------------------------HHHHHHhC-CCCCEEEEecCCCCccHHHHHH
Confidence            3221100  0                                       00000000 056666665432  44443333


Q ss_pred             cc-cCCCCcEEEcCCCeeee-cCCCCcccccCCcEEeccCCccccc-CCcchhcCCCCCEEECCCCcCccccCcchhcCC
Q 045139          591 SK-NWQKLTVLNLANNKFSG-KIPDSMDFNCMMLSLHLRNNSFIGE-LPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSL  667 (820)
Q Consensus       591 ~~-~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l  667 (820)
                      +. .+++|++|++++|++++ .++..+..+++|++|++++|.+++. ++.....+++|++|++++|++++.....+...+
T Consensus       458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~  537 (592)
T 3ogk_B          458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMAR  537 (592)
T ss_dssp             HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCC
T ss_pred             HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhC
Confidence            33 36777777777777765 3344456677777777777777644 344445677888888888887765445555566


Q ss_pred             CCccEEEcCcc
Q 045139          668 PDLVVLSLRSN  678 (820)
Q Consensus       668 ~~L~~L~L~~N  678 (820)
                      +.+....+..+
T Consensus       538 p~l~~~~~~~~  548 (592)
T 3ogk_B          538 PYWNIELIPSR  548 (592)
T ss_dssp             TTEEEEEECCC
T ss_pred             CCcEEEEecCc
Confidence            77766666554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=3.4e-27  Score=249.87  Aligned_cols=204  Identities=22%  Similarity=0.251  Sum_probs=133.3

Q ss_pred             cccEEEccCCcccc--ccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCC-cchhcCCCCCEE
Q 045139          572 HFRYLDLSDNLLSG--ELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELP-SSVKSFTQLTVL  648 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L  648 (820)
                      +|++|++++|.++.  ..|..+..+++|++|++++|.+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|
T Consensus        53 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  131 (306)
T 2z66_A           53 QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL  131 (306)
T ss_dssp             TCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEE
T ss_pred             cCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEE
Confidence            55666666666552  22455556666777777777666 345556666677777777776665444 456666777777


Q ss_pred             ECCCCcCccccCcchhcCCCCccEEEcCcccccc-cCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcc
Q 045139          649 DLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHG-RVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAM  727 (820)
Q Consensus       649 ~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~  727 (820)
                      ++++|++.+..|..+. .+++|++|++++|.+++ .+|..+..+++|+.|++++|++++..|..+.+++.|         
T Consensus       132 ~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L---------  201 (306)
T 2z66_A          132 DISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL---------  201 (306)
T ss_dssp             ECTTSCCEECSTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC---------
T ss_pred             ECCCCcCCccchhhcc-cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC---------
Confidence            7777777666665555 56677777777777665 456666677777777777777766556666665555         


Q ss_pred             cccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCC-C
Q 045139          728 IRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLT-L  805 (820)
Q Consensus       728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~  805 (820)
                                                      +.|+|++|++++..+ .+..+++|+.|++++|++++.+|..+..++ +
T Consensus       202 --------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~  249 (306)
T 2z66_A          202 --------------------------------QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS  249 (306)
T ss_dssp             --------------------------------CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTT
T ss_pred             --------------------------------CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhcc
Confidence                                            667777777765555 566667777777777777776666666663 6


Q ss_pred             CCeEeCCCCcCcc
Q 045139          806 LNSLDLSKNMLMR  818 (820)
Q Consensus       806 L~~LdLs~N~l~g  818 (820)
                      |++||+++|+++|
T Consensus       250 L~~L~L~~N~~~~  262 (306)
T 2z66_A          250 LAFLNLTQNDFAC  262 (306)
T ss_dssp             CCEEECTTCCEEC
T ss_pred             CCEEEccCCCeec
Confidence            7777777777665

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=9.7e-28  Score=255.80  Aligned_cols=200  Identities=23%  Similarity=0.328  Sum_probs=164.6

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhc---------C
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKS---------F  642 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~---------l  642 (820)
                      +|++|++++|.++ .+|..++.+++|++|++++|+++ .+|..++.+++|++|++++|++.+.+|..+..         +
T Consensus       105 ~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l  182 (328)
T 4fcg_A          105 HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL  182 (328)
T ss_dssp             TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred             CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence            6778888888877 77777888888888888888887 67777888888888888888777777776654         8


Q ss_pred             CCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccc
Q 045139          643 TQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANK  722 (820)
Q Consensus       643 ~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~  722 (820)
                      ++|++|++++|+++ .+|..+. .+++|++|++++|++++ +|..+..+++|++|++++|++.+.+|..+.+++.|    
T Consensus       183 ~~L~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L----  255 (328)
T 4fcg_A          183 VNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL----  255 (328)
T ss_dssp             TTCCEEEEEEECCC-CCCGGGG-GCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC----
T ss_pred             CCCCEEECcCCCcC-cchHhhc-CCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC----
Confidence            88888888888888 7888777 68888888888888884 66678888888888888888888888888877777    


Q ss_pred             cCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCccccc
Q 045139          723 SSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIG  801 (820)
Q Consensus       723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~  801 (820)
                                                           +.|+|++|++.+.+| .++.+++|++|+|++|++.+.+|+.++
T Consensus       256 -------------------------------------~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~  298 (328)
T 4fcg_A          256 -------------------------------------KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA  298 (328)
T ss_dssp             -------------------------------------CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred             -------------------------------------CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence                                                 788888888888888 888888888888888888888888888


Q ss_pred             CCCCCCeEeCCCCcCc
Q 045139          802 GLTLLNSLDLSKNMLM  817 (820)
Q Consensus       802 ~l~~L~~LdLs~N~l~  817 (820)
                      ++++|+.++++.|.+.
T Consensus       299 ~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          299 QLPANCIILVPPHLQA  314 (328)
T ss_dssp             GSCTTCEEECCGGGSC
T ss_pred             hccCceEEeCCHHHHH
Confidence            8888888888877654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=6.4e-29  Score=263.48  Aligned_cols=200  Identities=24%  Similarity=0.274  Sum_probs=170.7

Q ss_pred             cccEEEccCCccccccCccc--ccCCCCcEEEcCCCeeeecCCCCcccc-----cCCcEEeccCCcccccCCcchhcCCC
Q 045139          572 HFRYLDLSDNLLSGELPNCS--KNWQKLTVLNLANNKFSGKIPDSMDFN-----CMMLSLHLRNNSFIGELPSSVKSFTQ  644 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~~~p~~l~~l~~  644 (820)
                      +|++|++++|++++.+|..+  ..+++|++|++++|++++. |..++.+     ++|++|++++|++.+..|..++++++
T Consensus        96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~  174 (312)
T 1wwl_A           96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA  174 (312)
T ss_dssp             CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred             CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence            78999999999998888876  8899999999999999976 8888887     89999999999999888899999999


Q ss_pred             CCEEECCCCcCcccc--Ccch--hcCCCCccEEEcCcccccc--cCC-cccCCCCCCCEEeCcCCCCccccc-hhccccc
Q 045139          645 LTVLDLGHNKISGII--PAWI--GDSLPDLVVLSLRSNNFHG--RVP-VQVCHLQRIQVLDLSQNNISGTVP-QCLNNLT  716 (820)
Q Consensus       645 L~~L~Ls~N~l~~~~--p~~l--~~~l~~L~~L~L~~N~l~~--~~p-~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~  716 (820)
                      |++|++++|++.+.+  |..+  . .+++|++|++++|++++  .++ ..+..+++|+.|++++|++++.+| ..+..++
T Consensus       175 L~~L~Ls~N~l~~~~~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~  253 (312)
T 1wwl_A          175 LSTLDLSDNPELGERGLISALCPL-KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS  253 (312)
T ss_dssp             CCEEECCSCTTCHHHHHHHHSCTT-SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred             CCEEECCCCCcCcchHHHHHHHhc-cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence            999999999988763  3333  4 78999999999999983  222 344678999999999999998775 3444455


Q ss_pred             cccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccC
Q 045139          717 AMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGP  795 (820)
Q Consensus       717 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~  795 (820)
                      .|                                         +.|||++|+++ .+| .+.  ++|++|||++|++++.
T Consensus       254 ~L-----------------------------------------~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~  289 (312)
T 1wwl_A          254 QL-----------------------------------------NSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN  289 (312)
T ss_dssp             TC-----------------------------------------CEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC
T ss_pred             CC-----------------------------------------CEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC
Confidence            55                                         89999999998 888 666  8999999999999976


Q ss_pred             CcccccCCCCCCeEeCCCCcCccc
Q 045139          796 IPSKIGGLTLLNSLDLSKNMLMRA  819 (820)
Q Consensus       796 ip~~l~~l~~L~~LdLs~N~l~g~  819 (820)
                       |. +..+++|++||+++|++++.
T Consensus       290 -p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          290 -PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             -CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             -hh-HhhCCCCCEEeccCCCCCCC
Confidence             76 89999999999999999874

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=7.3e-28  Score=260.40  Aligned_cols=279  Identities=19%  Similarity=0.195  Sum_probs=201.1

Q ss_pred             CCCccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEec
Q 045139          474 QNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLIL  553 (820)
Q Consensus       474 ~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l  553 (820)
                      ++.....+.+++.++ .+|..+.   ++|++|++++|++++..+..+..++.+ +.|++++|.+++..|..+..+.    
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~----  100 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNL-QALVLTSNGINTIEEDSFSSLG----  100 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTC-CEEECTTSCCCEECTTTTTTCT----
T ss_pred             CCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCC-CEEECCCCccCccCHhhcCCCC----
Confidence            344445677777775 3454432   478888888888877666556666666 7777777777765555554443    


Q ss_pred             cCcccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCC-CCcccccCCcEEeccCC-cc
Q 045139          554 FKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIP-DSMDFNCMMLSLHLRNN-SF  631 (820)
Q Consensus       554 ~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N-~l  631 (820)
                                        +|++|++++|++++..+..+.++++|++|++++|++++..+ ..+..+++|++|++++| .+
T Consensus       101 ------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~  162 (353)
T 2z80_A          101 ------------------SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF  162 (353)
T ss_dssp             ------------------TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC
T ss_pred             ------------------CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccc
Confidence                              78888888888885555557888888888888888884333 37788888888888888 46


Q ss_pred             cccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchh
Q 045139          632 IGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQC  711 (820)
Q Consensus       632 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  711 (820)
                      .+..+..+.++++|++|++++|++++..|..+. .+++|++|++++|++....+..+..+++|+.|++++|++++..+..
T Consensus       163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  241 (353)
T 2z80_A          163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK-SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE  241 (353)
T ss_dssp             CEECTTTTTTCCEEEEEEEEETTCCEECTTTTT-TCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-
T ss_pred             cccCHHHccCCCCCCEEECCCCCcCccCHHHHh-ccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccc
Confidence            666677888888888888888888877787777 6888888888888886433333455788888888888888655544


Q ss_pred             ccccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCee----cCC-CcccccCCCEEe
Q 045139          712 LNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYG----EIP-EVTSLVGLISLN  786 (820)
Q Consensus       712 l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~----~ip-~l~~l~~L~~L~  786 (820)
                      +.....                                      .+.++.++|++|.+++    .+| .+..+++|+.|+
T Consensus       242 l~~~~~--------------------------------------~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~  283 (353)
T 2z80_A          242 LSTGET--------------------------------------NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELE  283 (353)
T ss_dssp             -----C--------------------------------------CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEE
T ss_pred             cccccc--------------------------------------cchhhccccccccccCcchhhhHHHHhcccCCCEEE
Confidence            332211                                      1223667777777765    467 788899999999


Q ss_pred             CCCCccccCCccc-ccCCCCCCeEeCCCCcCccc
Q 045139          787 LSKNSLTGPIPSK-IGGLTLLNSLDLSKNMLMRA  819 (820)
Q Consensus       787 Ls~N~l~~~ip~~-l~~l~~L~~LdLs~N~l~g~  819 (820)
                      +++|+++ .+|.. |+++++|++|++++|+++|.
T Consensus       284 Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          284 FSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             CCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence            9999998 56655 58899999999999999875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=4.1e-29  Score=290.46  Aligned_cols=204  Identities=14%  Similarity=0.084  Sum_probs=126.0

Q ss_pred             hCCCCCCCEEEcCCCCCCCCCccccccccCCcCC-ccEEECcCCC-CCCchhhhhhccCCCCcEEEccCCcccCC----C
Q 045139          211 VSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRS-LAHLDLSLND-VSNSVYYWLFNSSSSLVYLDLSSNKLQGP----I  284 (820)
Q Consensus       211 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~-L~~L~Ls~n~-l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~----i  284 (820)
                      ...+++|++|+|++|.+++..+   ..+...++. |++|++++|. ++......+...+++|++|++++|.+++.    +
T Consensus       108 ~~~~~~L~~L~L~~~~i~~~~~---~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l  184 (592)
T 3ogk_B          108 SNNLRQLKSVHFRRMIVSDLDL---DRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWL  184 (592)
T ss_dssp             HHHCTTCCEEEEESCBCCHHHH---HHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHH
T ss_pred             HhhCCCCCeEEeeccEecHHHH---HHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHH
Confidence            3367777788877776665443   233332234 8888887775 22222222333344888888888877643    1


Q ss_pred             CCCCCCCCCCCCEEECCCCCCC-----CcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCc-
Q 045139          285 PDSAFPNPTSLSYLDLSNNQLV-----SVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLR-  358 (820)
Q Consensus       285 p~~~l~~l~~L~~L~Ls~n~l~-----~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~-  358 (820)
                      +.. +..+++|++|++++|.++     .++..+.++++|++|++++|.+.+ +|..+..++     +|+.|+++..... 
T Consensus       185 ~~~-~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~-----~L~~L~l~~~~~~~  257 (592)
T 3ogk_B          185 HEL-AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAA-----NLEEFCGGSLNEDI  257 (592)
T ss_dssp             HHH-HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCT-----TCCEEEECBCCCCT
T ss_pred             HHH-HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhh-----HHHhhccccccccc
Confidence            111 345678888888888776     334456778888888888888776 567777777     7888888753322 


Q ss_pred             --ccCCC-CcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCc
Q 045139          359 --GSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLS  435 (820)
Q Consensus       359 --~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls  435 (820)
                        +..+. +..+++|+.|.+++          + ..+.+|..+..+++|++|++++|.+++......+..+++|++|+++
T Consensus       258 ~~~~~~~~l~~~~~L~~L~l~~----------~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          258 GMPEKYMNLVFPRKLCRLGLSY----------M-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             TCTTSSSCCCCCTTCCEEEETT----------C-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             chHHHHHHhhccccccccCccc----------c-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence              11112 55566666654432          2 1235566677777888888888776654333345677777777777

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=2e-26  Score=241.12  Aligned_cols=206  Identities=21%  Similarity=0.223  Sum_probs=189.0

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCc-ccccCCcchhcCCCCCEEEC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNS-FIGELPSSVKSFTQLTVLDL  650 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L  650 (820)
                      ++++|++++|.+++..+..|..+++|++|++++|++++..|..|+.+++|++|++++|+ +.+..|..+..+++|++|++
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l  112 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence            78999999999998888889999999999999999998889999999999999999998 77777889999999999999


Q ss_pred             CCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCccccc
Q 045139          651 GHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRY  730 (820)
Q Consensus       651 s~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~  730 (820)
                      ++|++++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+.+++.|            
T Consensus       113 ~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------------  179 (285)
T 1ozn_A          113 DRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL------------  179 (285)
T ss_dssp             TTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC------------
T ss_pred             CCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc------------
Confidence            99999977777776 79999999999999998777789999999999999999996666678877777            


Q ss_pred             CCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeE
Q 045139          731 PLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSL  809 (820)
Q Consensus       731 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L  809 (820)
                                                   +.|++++|++++.+| .+..+++|+.|++++|++++..|..+..+++|++|
T Consensus       180 -----------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  230 (285)
T 1ozn_A          180 -----------------------------DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL  230 (285)
T ss_dssp             -----------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred             -----------------------------CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEE
Confidence                                         899999999998888 99999999999999999998777889999999999


Q ss_pred             eCCCCcCccc
Q 045139          810 DLSKNMLMRA  819 (820)
Q Consensus       810 dLs~N~l~g~  819 (820)
                      |+++|++++.
T Consensus       231 ~l~~N~~~c~  240 (285)
T 1ozn_A          231 RLNDNPWVCD  240 (285)
T ss_dssp             ECCSSCEECS
T ss_pred             eccCCCccCC
Confidence            9999999864

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=3.3e-26  Score=256.07  Aligned_cols=205  Identities=22%  Similarity=0.242  Sum_probs=183.4

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      +|++|++++|++++..|..|.++++|++|+|++|++++..+..|+.+++|++|++++|++.+..+..|.++++|++|+++
T Consensus       100 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  179 (452)
T 3zyi_A          100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG  179 (452)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCC
Confidence            78999999999998888999999999999999999998777789999999999999999998888889999999999999


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP  731 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~  731 (820)
                      +|+..+.+|......+++|++|++++|++++ +| .+..+++|+.|++++|++++..|..|.+++.|             
T Consensus       180 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------  244 (452)
T 3zyi_A          180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL-------------  244 (452)
T ss_dssp             CCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTC-------------
T ss_pred             CCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCC-------------
Confidence            9655556765433479999999999999985 44 58889999999999999998889889888877             


Q ss_pred             CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEe
Q 045139          732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLD  810 (820)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~Ld  810 (820)
                                                  +.|+|++|++++..| .+..+++|+.|+|++|++++..+..|..+++|+.|+
T Consensus       245 ----------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  296 (452)
T 3zyi_A          245 ----------------------------KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH  296 (452)
T ss_dssp             ----------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEE
T ss_pred             ----------------------------CEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEE
Confidence                                        899999999998888 899999999999999999988888899999999999


Q ss_pred             CCCCcCccc
Q 045139          811 LSKNMLMRA  819 (820)
Q Consensus       811 Ls~N~l~g~  819 (820)
                      |++|++.+.
T Consensus       297 L~~Np~~Cd  305 (452)
T 3zyi_A          297 LHHNPWNCD  305 (452)
T ss_dssp             CCSSCEECS
T ss_pred             ccCCCcCCC
Confidence            999998753

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=3.5e-26  Score=254.89  Aligned_cols=204  Identities=23%  Similarity=0.265  Sum_probs=183.1

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      +|++|++++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|++++|++.+..+..|.++++|++|+++
T Consensus        89 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~  168 (440)
T 3zyj_A           89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG  168 (440)
T ss_dssp             SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCC
Confidence            88999999999998888899999999999999999997777789999999999999999998888899999999999999


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP  731 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~  731 (820)
                      +|+..+.++......+++|++|++++|+++ .+| .+..+++|+.|+|++|++++..|..|.+++.|             
T Consensus       169 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------  233 (440)
T 3zyj_A          169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL-------------  233 (440)
T ss_dssp             CCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTC-------------
T ss_pred             CCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccC-------------
Confidence            965555666543348999999999999998 555 58889999999999999998888888888877             


Q ss_pred             CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEe
Q 045139          732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLD  810 (820)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~Ld  810 (820)
                                                  +.|+|++|++++..| .+..+++|+.|+|++|++++..+..|..+++|+.|+
T Consensus       234 ----------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  285 (440)
T 3zyj_A          234 ----------------------------QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH  285 (440)
T ss_dssp             ----------------------------CEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEE
T ss_pred             ----------------------------CEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEE
Confidence                                        899999999998888 899999999999999999988888899999999999


Q ss_pred             CCCCcCcc
Q 045139          811 LSKNMLMR  818 (820)
Q Consensus       811 Ls~N~l~g  818 (820)
                      |++|++.+
T Consensus       286 L~~Np~~C  293 (440)
T 3zyj_A          286 LHHNPWNC  293 (440)
T ss_dssp             CCSSCEEC
T ss_pred             cCCCCccC
Confidence            99999875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=1.1e-26  Score=245.99  Aligned_cols=181  Identities=20%  Similarity=0.266  Sum_probs=132.8

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCC-CCcccccCCcEEeccCCcccccCCcchhcCCCCCEEEC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIP-DSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDL  650 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  650 (820)
                      +|++|++++|.++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus        79 ~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  157 (306)
T 2z66_A           79 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM  157 (306)
T ss_dssp             CCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred             ccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence            6777777777776 456667777777788887777775544 56777777778888777777777777777777888888


Q ss_pred             CCCcCcc-ccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccc
Q 045139          651 GHNKISG-IIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIR  729 (820)
Q Consensus       651 s~N~l~~-~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~  729 (820)
                      ++|.+++ .+|..+. .+++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..++.|           
T Consensus       158 ~~n~l~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-----------  225 (306)
T 2z66_A          158 AGNSFQENFLPDIFT-ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL-----------  225 (306)
T ss_dssp             TTCEEGGGEECSCCT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTC-----------
T ss_pred             CCCccccccchhHHh-hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccC-----------
Confidence            8777775 4666665 67777888888777777777777777778888888777776555566665555           


Q ss_pred             cCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-Ccccc-cCCCEEeCCCCccccC
Q 045139          730 YPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSL-VGLISLNLSKNSLTGP  795 (820)
Q Consensus       730 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l-~~L~~L~Ls~N~l~~~  795 (820)
                                                    +.||+++|++++.+| .+..+ ++|+.|+|++|.+++.
T Consensus       226 ------------------------------~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          226 ------------------------------QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             ------------------------------CEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             ------------------------------CEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence                                          777777777777777 67776 3777777777777754

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=1.7e-26  Score=249.61  Aligned_cols=290  Identities=21%  Similarity=0.205  Sum_probs=189.6

Q ss_pred             CCCCcccCceEecCCCCcEEEEEcCCCCCCCCcccccccccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCC
Q 045139           72 KKDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAG  151 (820)
Q Consensus        72 ~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~  151 (820)
                      ...+|.|.|+ |+.          ++   +.++ .+|..+.  ++|++|++++|.+++. .+..++++++|++|++++|.
T Consensus        26 ~~~~C~~~~~-c~~----------~~---~~l~-~iP~~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~   87 (353)
T 2z80_A           26 ASLSCDRNGI-CKG----------SS---GSLN-SIPSGLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNG   87 (353)
T ss_dssp             -CCEECTTSE-EEC----------CS---TTCS-SCCTTCC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSC
T ss_pred             cCCCCCCCeE-eeC----------CC---CCcc-ccccccc--ccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCc
Confidence            4567899987 642          22   3333 4565554  4899999999999873 44478999999999999999


Q ss_pred             CCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCC
Q 045139          152 FTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVI  231 (820)
Q Consensus       152 l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  231 (820)
                      +++..|..++++++|++|++++|                         .+++.  .+..++++++|++|++++|.+++..
T Consensus        88 l~~~~~~~~~~l~~L~~L~Ls~n-------------------------~l~~~--~~~~~~~l~~L~~L~L~~n~l~~l~  140 (353)
T 2z80_A           88 INTIEEDSFSSLGSLEHLDLSYN-------------------------YLSNL--SSSWFKPLSSLTFLNLLGNPYKTLG  140 (353)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSS-------------------------CCSSC--CHHHHTTCTTCSEEECTTCCCSSSC
T ss_pred             cCccCHhhcCCCCCCCEEECCCC-------------------------cCCcC--CHhHhCCCccCCEEECCCCCCcccC
Confidence            99777778888888888888887                         33331  1234777888888888888777543


Q ss_pred             ccccccccCCcCCccEEECcCCC-CCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcch
Q 045139          232 ASSSVSFSNSSRSLAHLDLSLND-VSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK  310 (820)
Q Consensus       232 ~~~~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~  310 (820)
                      +.  ..+..+ ++|++|++++|. +++..+..+.... +|++|++++|.+++..|.. ++.+++|++|++++|+++.+|.
T Consensus       141 ~~--~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~  215 (353)
T 2z80_A          141 ET--SLFSHL-TKLQILRVGNMDTFTKIQRKDFAGLT-FLEELEIDASDLQSYEPKS-LKSIQNVSHLILHMKQHILLLE  215 (353)
T ss_dssp             SS--CSCTTC-TTCCEEEEEESSSCCEECTTTTTTCC-EEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSCSTTHHH
T ss_pred             ch--hhhccC-CCCcEEECCCCccccccCHHHccCCC-CCCEEECCCCCcCccCHHH-HhccccCCeecCCCCccccchh
Confidence            31  134444 777777777774 4433333444443 7777777777776544544 6666777777777776666655


Q ss_pred             h-hhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCc
Q 045139          311 S-FRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNR  389 (820)
Q Consensus       311 ~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~  389 (820)
                      . +..+++|++|++++|++++..+..+..                         ....+.++.+++..+.+     +++.
T Consensus       216 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-------------------------~~~~~~l~~l~L~~~~l-----~~~~  265 (353)
T 2z80_A          216 IFVDVTSSVECLELRDTDLDTFHFSELST-------------------------GETNSLIKKFTFRNVKI-----TDES  265 (353)
T ss_dssp             HHHHHTTTEEEEEEESCBCTTCCCC-------------------------------CCCCCCEEEEESCBC-----CHHH
T ss_pred             hhhhhcccccEEECCCCcccccccccccc-------------------------ccccchhhccccccccc-----cCcc
Confidence            4 334566666666666666543332221                         11233444444332221     2233


Q ss_pred             ccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCcccccc
Q 045139          390 FTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNF  443 (820)
Q Consensus       390 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  443 (820)
                      +. .+|..+..+++|+.|++++|+++. +|...|..+++|++|++++|++.+..
T Consensus       266 l~-~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          266 LF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             HH-HHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             hh-hhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccCcC
Confidence            32 467788999999999999999985 66656789999999999999987643

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=3.4e-26  Score=239.46  Aligned_cols=267  Identities=20%  Similarity=0.174  Sum_probs=199.3

Q ss_pred             cEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcc
Q 045139          478 SELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNM  557 (820)
Q Consensus       478 ~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~  557 (820)
                      +.++.+++.++. +|..+   .+++++|++++|.+++..+..+..++.+ +.|++++|.+++..|..+..+.        
T Consensus        14 ~~~~c~~~~l~~-ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L-~~L~l~~n~l~~~~~~~~~~l~--------   80 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VPVGI---PAASQRIFLHGNRISHVPAASFRACRNL-TILWLHSNVLARIDAAAFTGLA--------   80 (285)
T ss_dssp             CEEECCSSCCSS-CCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTC-CEEECCSSCCCEECTTTTTTCT--------
T ss_pred             eEEEcCcCCccc-CCcCC---CCCceEEEeeCCcCCccCHHHcccCCCC-CEEECCCCccceeCHhhcCCcc--------
Confidence            455666655543 34322   2467777777777776666555566666 6667776666665555444443        


Q ss_pred             cccccchhhccccccccEEEccCCc-cccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCC
Q 045139          558 FSGSLSFLCQISDEHFRYLDLSDNL-LSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELP  636 (820)
Q Consensus       558 ~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  636 (820)
                                    +|++|++++|. +++..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+
T Consensus        81 --------------~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  146 (285)
T 1ozn_A           81 --------------LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD  146 (285)
T ss_dssp             --------------TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             --------------CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence                          78889998887 776668888889999999999999988778888889999999999999987777


Q ss_pred             cchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccc
Q 045139          637 SSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLT  716 (820)
Q Consensus       637 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  716 (820)
                      ..+..+++|++|++++|++++..+..+. .+++|++|++++|++++..|..+..+++|+.|++++|++++..|..+..++
T Consensus       147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  225 (285)
T 1ozn_A          147 DTFRDLGNLTHLFLHGNRISSVPERAFR-GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR  225 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred             hHhccCCCccEEECCCCcccccCHHHhc-CccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence            7788899999999999999855555565 688999999999999888888899999999999999999876666777777


Q ss_pred             cccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCccccCC
Q 045139          717 AMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPI  796 (820)
Q Consensus       717 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~~i  796 (820)
                      .|                                         +.|++++|+++...+.......++.+..+.|.+....
T Consensus       226 ~L-----------------------------------------~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~  264 (285)
T 1ozn_A          226 AL-----------------------------------------QYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSL  264 (285)
T ss_dssp             TC-----------------------------------------CEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEE
T ss_pred             cc-----------------------------------------CEEeccCCCccCCCCcHHHHHHHHhcccccCccccCC
Confidence            76                                         7899999998865553233355666778888888888


Q ss_pred             cccccC--CCCCCeEeCCC
Q 045139          797 PSKIGG--LTLLNSLDLSK  813 (820)
Q Consensus       797 p~~l~~--l~~L~~LdLs~  813 (820)
                      |+.+.+  +..++..++++
T Consensus       265 p~~l~g~~l~~l~~~~l~~  283 (285)
T 1ozn_A          265 PQRLAGRDLKRLAANDLQG  283 (285)
T ss_dssp             SGGGTTCBGGGSCGGGSCC
T ss_pred             chHhCCcChhhcCHHHhcc
Confidence            887754  34444444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=5.2e-28  Score=256.46  Aligned_cols=272  Identities=22%  Similarity=0.230  Sum_probs=208.8

Q ss_pred             CCCCCCCCCCCCCcccCceEecCCCCcEEEEEcCCCCCCCCcccccccccCCCCCCEEECcCCCCCCcccCcccc-----
Q 045139           63 LSSWGNEDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIG-----  137 (820)
Q Consensus        63 ~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~~i~-----  137 (820)
                      ..+|.   ....|+.|..+.......+++.+++++   +.+  .+|..+...  |++|+|++|.+....+|..+.     
T Consensus        21 ~~~~~---~~~~c~~~~~~~~~~~~~~L~~l~l~~---n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~   90 (312)
T 1wwl_A           21 KPDWS---SAFNCLGAADVELYGGGRSLEYLLKRV---DTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALR   90 (312)
T ss_dssp             SCCGG---GGGGSSSCSEEEEEEEEEECTTHHHHC---CTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHH
T ss_pred             ccchH---HHhhhhccccEEEEccCCCceeEeecc---ccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHH
Confidence            45786   356777777765432234577777877   666  778777655  999999999996545887776     


Q ss_pred             --CCCCCCEEeccCCCCCCCCCccC--CCCCCCcEEeCCCCccccccchhhccCC-----CCCCeeeCCCccCCCCccHH
Q 045139          138 --SLKNIRHLDLSNAGFTGRVPYQL--GNLTSLQYLDLSFNFDMLSKKLEWLSQL-----SFLEYVRLNQVNLGEATDWL  208 (820)
Q Consensus       138 --~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~Ls~n~~~~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~  208 (820)
                        ++++|++|+|++|.+++.+|..+  +.+++|++|++++| .+... +..++.+     ++|++|++++|.+.+.  .+
T Consensus        91 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~--~~  166 (312)
T 1wwl_A           91 VLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNF--SC  166 (312)
T ss_dssp             HHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCC--CT
T ss_pred             hcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccc--hH
Confidence              79999999999999999999887  89999999999999 22222 4555555     8999999999998774  34


Q ss_pred             HHhCCCCCCCEEEcCCCCCCCCCccccccc--cCCcCCccEEECcCCCCCC--chhhhhhccCCCCcEEEccCCcccCCC
Q 045139          209 QVVSQLPSLTELQLRGCNLPSVIASSSVSF--SNSSRSLAHLDLSLNDVSN--SVYYWLFNSSSSLVYLDLSSNKLQGPI  284 (820)
Q Consensus       209 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~~~~~L~~L~Ls~n~l~~--~~~~~~~~~~~~L~~L~Ls~n~l~g~i  284 (820)
                      ..++++++|++|++++|.+.+..+.. ..+  ..+ ++|++|++++|.+++  .++..++...++|++|++++|.+++.+
T Consensus       167 ~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  244 (312)
T 1wwl_A          167 EQVRVFPALSTLDLSDNPELGERGLI-SALCPLKF-PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA  244 (312)
T ss_dssp             TTCCCCSSCCEEECCSCTTCHHHHHH-HHSCTTSC-TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred             HHhccCCCCCEEECCCCCcCcchHHH-HHHHhccC-CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence            67889999999999999887642200 122  555 899999999999984  445555555559999999999999777


Q ss_pred             CCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcc
Q 045139          285 PDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRG  359 (820)
Q Consensus       285 p~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~  359 (820)
                      |...+..+++|++|++++|+++.+|..+.  ++|++|++++|++++. |. +..++     +|++|++++|++++
T Consensus       245 ~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~-----~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          245 GAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELP-----QVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSC-----EEEEEECTTCTTTC
T ss_pred             chhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC-hh-HhhCC-----CCCEEeccCCCCCC
Confidence            65557778899999999999998888766  7888888888888876 44 66666     78888888887764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=9.2e-27  Score=247.48  Aligned_cols=261  Identities=18%  Similarity=0.220  Sum_probs=176.7

Q ss_pred             CcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcC
Q 045139          370 LKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVP  449 (820)
Q Consensus       370 L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  449 (820)
                      ++++.+.++.++..+++.+.+.......+..+++|++|++++|.+++..+. .+..+++|++|++++|.+.+..      
T Consensus         2 i~~l~~~g~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~------   74 (317)
T 3o53_A            2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNVLYETL------   74 (317)
T ss_dssp             CCEEEEETTEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHH-HHTTCTTCCEEECTTSCCEEEE------
T ss_pred             cccccCCcCceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHH-HhhCCCcCCEEECCCCcCCcch------
Confidence            345555566666677777777766666677788899999999999875444 7888999999999998875321      


Q ss_pred             ccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCc
Q 045139          450 SFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPE  529 (820)
Q Consensus       450 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~  529 (820)
                                        +  +..+++|++|++++|.+++..+      .++|++|++++|++++..+.           
T Consensus        75 ------------------~--~~~l~~L~~L~Ls~n~l~~l~~------~~~L~~L~l~~n~l~~~~~~-----------  117 (317)
T 3o53_A           75 ------------------D--LESLSTLRTLDLNNNYVQELLV------GPSIETLHAANNNISRVSCS-----------  117 (317)
T ss_dssp             ------------------E--ETTCTTCCEEECCSSEEEEEEE------CTTCCEEECCSSCCSEEEEC-----------
T ss_pred             ------------------h--hhhcCCCCEEECcCCccccccC------CCCcCEEECCCCccCCcCcc-----------
Confidence                              1  4455666666666666653221      14566666666655432221           


Q ss_pred             eeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeee
Q 045139          530 IDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSG  609 (820)
Q Consensus       530 l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  609 (820)
                                    .+.                         +|++|++++|++++..+..+..+++|++|++++|++++
T Consensus       118 --------------~~~-------------------------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  158 (317)
T 3o53_A          118 --------------RGQ-------------------------GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT  158 (317)
T ss_dssp             --------------CCS-------------------------SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred             --------------ccC-------------------------CCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence                          000                         56777777777776666677777777777777777777


Q ss_pred             cCCCCcc-cccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCccc
Q 045139          610 KIPDSMD-FNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV  688 (820)
Q Consensus       610 ~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l  688 (820)
                      ..+..+. .+++|++|++++|.+++. | ....+++|++|++++|++++ +|..+. .+++|++|++++|+++ .+|..+
T Consensus       159 ~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~-~l~~L~~L~L~~N~l~-~l~~~~  233 (317)
T 3o53_A          159 VNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQ-SAAGVTWISLRNNKLV-LIEKAL  233 (317)
T ss_dssp             EEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGG-GGTTCSEEECTTSCCC-EECTTC
T ss_pred             ccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhc-ccCcccEEECcCCccc-chhhHh
Confidence            6666553 567777777777777755 2 23347777777777777774 444455 5777777777777777 466677


Q ss_pred             CCCCCCCEEeCcCCCCc-cccchhccccccc
Q 045139          689 CHLQRIQVLDLSQNNIS-GTVPQCLNNLTAM  718 (820)
Q Consensus       689 ~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L  718 (820)
                      ..+++|+.|++++|++. +.+|..+..++.|
T Consensus       234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L  264 (317)
T 3o53_A          234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV  264 (317)
T ss_dssp             CCCTTCCEEECTTCCCBHHHHHHHHHTCHHH
T ss_pred             hcCCCCCEEEccCCCccCcCHHHHHhccccc
Confidence            77777777777777777 5666666666665

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=3.3e-27  Score=250.96  Aligned_cols=188  Identities=21%  Similarity=0.175  Sum_probs=108.5

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      +|++|++++|++++..     ..++|++|++++|++++..+..   +++|++|++++|++++..+..+..+++|++|+++
T Consensus        81 ~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls  152 (317)
T 3o53_A           81 TLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK  152 (317)
T ss_dssp             TCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT
T ss_pred             CCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECC
Confidence            5566666666655321     2256666666666665544332   3456666666666666555566666666666666


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP  731 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~  731 (820)
                      +|++++..|..+...+++|++|++++|++++. |. ...+++|++|++++|++++ +|..+..++.|             
T Consensus       153 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L-------------  216 (317)
T 3o53_A          153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGV-------------  216 (317)
T ss_dssp             TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTC-------------
T ss_pred             CCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcc-------------
Confidence            66666555555433456666666666666643 22 2235666666666666663 33335554444             


Q ss_pred             CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccc-cCCcccccCCCCCCeE
Q 045139          732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLT-GPIPSKIGGLTLLNSL  809 (820)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~-~~ip~~l~~l~~L~~L  809 (820)
                                                  +.|||++|+++ .+| .+..+++|+.|++++|.++ +.+|..+..+++|+.+
T Consensus       217 ----------------------------~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l  267 (317)
T 3o53_A          217 ----------------------------TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV  267 (317)
T ss_dssp             ----------------------------SEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred             ----------------------------cEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence                                        56666666666 345 5666666666666666666 5555666666666666


Q ss_pred             eCC
Q 045139          810 DLS  812 (820)
Q Consensus       810 dLs  812 (820)
                      +++
T Consensus       268 ~l~  270 (317)
T 3o53_A          268 AKQ  270 (317)
T ss_dssp             HHH
T ss_pred             ECC
Confidence            555

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=5.8e-25  Score=228.90  Aligned_cols=210  Identities=23%  Similarity=0.168  Sum_probs=186.8

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      ++++|++++|++++..+..+.++++|++|++++|++++..+..|+.+++|++|++++|++++..+..+.++++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            78999999999998877799999999999999999998888899999999999999999999988999999999999999


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCccccccc-CCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCccccc
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGR-VPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRY  730 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~  730 (820)
                      +|++++..+..+. .+++|++|++++|++++. +|..+..+++|+.|++++|++++..+..+..+..|+.+         
T Consensus       109 ~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l---------  178 (276)
T 2z62_A          109 ETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL---------  178 (276)
T ss_dssp             TSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC---------
T ss_pred             CCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccc---------
Confidence            9999976666676 799999999999999874 69999999999999999999998777788777766211         


Q ss_pred             CCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCccccCCcccccCCCCCCeEe
Q 045139          731 PLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLD  810 (820)
Q Consensus       731 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~Ld  810 (820)
                                                  ...|++++|++++..+......+|+.|++++|++++..+..|+++++|++|+
T Consensus       179 ----------------------------~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  230 (276)
T 2z62_A          179 ----------------------------NLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIW  230 (276)
T ss_dssp             ----------------------------CEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEE
T ss_pred             ----------------------------ceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEE
Confidence                                        0279999999996666655666899999999999987777789999999999


Q ss_pred             CCCCcCccc
Q 045139          811 LSKNMLMRA  819 (820)
Q Consensus       811 Ls~N~l~g~  819 (820)
                      +++|+++|.
T Consensus       231 l~~N~~~c~  239 (276)
T 2z62_A          231 LHTNPWDCS  239 (276)
T ss_dssp             CCSSCBCCC
T ss_pred             ccCCccccc
Confidence            999999875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=2.3e-25  Score=255.35  Aligned_cols=284  Identities=26%  Similarity=0.282  Sum_probs=167.6

Q ss_pred             CCCCCCCCCCCCCcccCceEe------cCCCCcEEEEEcCCCCCCCCcccccccccCCCCCCEEECcCCCCCCcccCccc
Q 045139           63 LSSWGNEDDKKDCCKWRGVSC------SNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFI  136 (820)
Q Consensus        63 ~~~W~~~~~~~~~c~w~gv~c------~~~~~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~~i  136 (820)
                      .++|.   .+.+||.|.|..|      ......++.+++++   +.++ .+|..+.  ++|++|++++|.++.  +|.  
T Consensus        12 w~~W~---~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~---n~L~-~lp~~l~--~~L~~L~L~~N~l~~--lp~--   78 (622)
T 3g06_A           12 WSAWR---RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGE---SGLT-TLPDCLP--AHITTLVIPDNNLTS--LPA--   78 (622)
T ss_dssp             HHHHH---HTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCS---SCCS-CCCSCCC--TTCSEEEECSCCCSC--CCC--
T ss_pred             HHHHH---hcCCcchhccccccCcccccccCCCCcEEEecC---CCcC-ccChhhC--CCCcEEEecCCCCCC--CCC--
Confidence            45675   3667999977432      11123478888888   7776 6777665  789999999998875  676  


Q ss_pred             cCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCC
Q 045139          137 GSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPS  216 (820)
Q Consensus       137 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~  216 (820)
                       .+++|++|+|++|.++ .+|.   .+++|++|++++|. + ...+.   .+++|++|++++|.+...+.      .+++
T Consensus        79 -~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~-l-~~l~~---~l~~L~~L~L~~N~l~~lp~------~l~~  142 (622)
T 3g06_A           79 -LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNP-L-THLPA---LPSGLCKLWIFGNQLTSLPV------LPPG  142 (622)
T ss_dssp             -CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCC-C-CCCCC---CCTTCCEEECCSSCCSCCCC------CCTT
T ss_pred             -cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCc-C-CCCCC---CCCCcCEEECCCCCCCcCCC------CCCC
Confidence             5788999999999888 5665   67888888888882 1 11111   45667777777776665322      2366


Q ss_pred             CCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCC
Q 045139          217 LTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLS  296 (820)
Q Consensus       217 L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~  296 (820)
                      |++|++++|.+++...        ..++|+.|++++|.+++ +|    ...++|++|++++|.++ .+|..    +++|+
T Consensus       143 L~~L~Ls~N~l~~l~~--------~~~~L~~L~L~~N~l~~-l~----~~~~~L~~L~Ls~N~l~-~l~~~----~~~L~  204 (622)
T 3g06_A          143 LQELSVSDNQLASLPA--------LPSELCKLWAYNNQLTS-LP----MLPSGLQELSVSDNQLA-SLPTL----PSELY  204 (622)
T ss_dssp             CCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCS-CCCCC----CTTCC
T ss_pred             CCEEECcCCcCCCcCC--------ccCCCCEEECCCCCCCC-Cc----ccCCCCcEEECCCCCCC-CCCCc----cchhh
Confidence            6666666666655321        11556666666666654 33    22236666666666666 34432    35566


Q ss_pred             EEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcCCCcEEecC
Q 045139          297 YLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLY  376 (820)
Q Consensus       297 ~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~l~  376 (820)
                      .|++++|.++.+|..   +++|++|++++|++++. |   ..++     +|+.|++++|.++. +|.  .+++|+.|++ 
T Consensus       205 ~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~l-p---~~l~-----~L~~L~Ls~N~L~~-lp~--~~~~L~~L~L-  268 (622)
T 3g06_A          205 KLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSL-P---VLPS-----ELKELMVSGNRLTS-LPM--LPSGLLSLSV-  268 (622)
T ss_dssp             EEECCSSCCSSCCCC---CTTCCEEECCSSCCSCC-C---CCCT-----TCCEEECCSSCCSC-CCC--CCTTCCEEEC-
T ss_pred             EEECcCCcccccCCC---CCCCCEEEccCCccCcC-C---CCCC-----cCcEEECCCCCCCc-CCc--ccccCcEEeC-
Confidence            666666666655542   35566666666666552 2   1122     56666666665552 332  3344443332 


Q ss_pred             CCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccC
Q 045139          377 DNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMIT  419 (820)
Q Consensus       377 ~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  419 (820)
                               ++|.++ .+|..+.++++|+.|++++|.+++.++
T Consensus       269 ---------s~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~  301 (622)
T 3g06_A          269 ---------YRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL  301 (622)
T ss_dssp             ---------CSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred             ---------CCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence                     333333 345555555555555555555555433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=5.9e-28  Score=280.86  Aligned_cols=213  Identities=16%  Similarity=0.167  Sum_probs=104.9

Q ss_pred             CCCcccCceEecCCCCcEEEEEcCCCCCCCCccccc-ccccCCCCCCEEECcCCCCCCc-c-cCc------------ccc
Q 045139           73 KDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNIS-SSLIGLQHLNYLNMKYNDFGGK-Q-IPA------------FIG  137 (820)
Q Consensus        73 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~l~g~i~-~~l~~l~~L~~L~Ls~n~l~~~-~-~p~------------~i~  137 (820)
                      .-|++|.++...    ..+.+++..     ..+..| ..+.++++|++|+++++..... . .|.            ...
T Consensus        32 ~vck~W~~~~~~----~~~~l~~~~-----~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~  102 (594)
T 2p1m_B           32 LVCKSWYEIERW----CRRKVFIGN-----CYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSS  102 (594)
T ss_dssp             TSCHHHHHHHHH----HCCEEEESS-----TTSSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHH
T ss_pred             HHHHHHHHhhhh----hceEEeecc-----ccccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHH
Confidence            346788887321    234555544     122222 3567889999999998753211 0 111            123


Q ss_pred             CCCCCCEEeccCCCCCCCCCccCC-CCCCCcEEeCCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCC
Q 045139          138 SLKNIRHLDLSNAGFTGRVPYQLG-NLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPS  216 (820)
Q Consensus       138 ~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~  216 (820)
                      .+++|++|+|++|.+++..+..+. .+++|++|++++|.......                         ++..+.++++
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~-------------------------l~~~~~~~~~  157 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDG-------------------------LAAIAATCRN  157 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHH-------------------------HHHHHHHCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHH-------------------------HHHHHHhCCC
Confidence            567788888888777766555554 57777777777662222111                         2222334444


Q ss_pred             CCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCC--CCCchhhhhhccCCCCcEEEccCC-cccCCCCCCCCCCCC
Q 045139          217 LTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLND--VSNSVYYWLFNSSSSLVYLDLSSN-KLQGPIPDSAFPNPT  293 (820)
Q Consensus       217 L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~~~~L~~L~Ls~n-~l~g~ip~~~l~~l~  293 (820)
                      |++|++++|.+++..+..+..+...+++|++|++++|.  ++......+....++|++|++++| .+. .+|.. +..++
T Consensus       158 L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~-~~~~~  235 (594)
T 2p1m_B          158 LKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATL-LQRAP  235 (594)
T ss_dssp             CCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHH-HHHCT
T ss_pred             CCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHH-HhcCC
Confidence            55555554444433322222222222455555555553  221222222222335566666555 222 23322 34445


Q ss_pred             CCCEEECCCCC-------CCCcchhhhccCCCcEE
Q 045139          294 SLSYLDLSNNQ-------LVSVPKSFRNLCRLRAL  321 (820)
Q Consensus       294 ~L~~L~Ls~n~-------l~~ip~~l~~l~~L~~L  321 (820)
                      +|++|+++.+.       +..++..+.++++|+.+
T Consensus       236 ~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~L  270 (594)
T 2p1m_B          236 QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL  270 (594)
T ss_dssp             TCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEE
T ss_pred             cceEcccccccCccchhhHHHHHHHHhcCCCcccc
Confidence            55555543332       23444456666666666

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=1.6e-24  Score=242.46  Aligned_cols=246  Identities=22%  Similarity=0.221  Sum_probs=197.6

Q ss_pred             ccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCc
Q 045139          477 FSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKN  556 (820)
Q Consensus       477 L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n  556 (820)
                      ...++.++..++ .+|..+   .+++++|++++|++++..|..+..++.+ +.|++++|.+++..|..+..+.       
T Consensus        56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L-~~L~Ls~n~i~~~~~~~~~~l~-------  123 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHL-EVLQLGRNSIRQIEVGAFNGLA-------  123 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTC-CEEECCSSCCCEECTTTTTTCT-------
T ss_pred             CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCC-CEEECCCCccCCcChhhccCcc-------
Confidence            345666666654 345433   2477888888888877777767777777 7778887777766665555544       


Q ss_pred             ccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCc-ccccC
Q 045139          557 MFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNS-FIGEL  635 (820)
Q Consensus       557 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~  635 (820)
                                     +|++|++++|++++..+..|..+++|++|++++|++.+..+..|..+++|++|++++|. +....
T Consensus       124 ---------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~  188 (452)
T 3zyi_A          124 ---------------SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS  188 (452)
T ss_dssp             ---------------TCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             ---------------cCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence                           88999999999997777778999999999999999998777789999999999999854 44444


Q ss_pred             CcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhcccc
Q 045139          636 PSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNL  715 (820)
Q Consensus       636 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  715 (820)
                      +..+.++++|++|++++|+++ .+|. +. .+++|++|+|++|++++..|..|..+++|+.|++++|++++..|..|.++
T Consensus       189 ~~~~~~l~~L~~L~L~~n~l~-~~~~-~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  265 (452)
T 3zyi_A          189 EGAFEGLFNLKYLNLGMCNIK-DMPN-LT-PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL  265 (452)
T ss_dssp             TTTTTTCTTCCEEECTTSCCS-SCCC-CT-TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             hhhccCCCCCCEEECCCCccc-cccc-cc-ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence            457889999999999999998 4564 44 68999999999999998889999999999999999999998888888887


Q ss_pred             ccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccc
Q 045139          716 TAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLT  793 (820)
Q Consensus       716 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~  793 (820)
                      ++|                                         +.|||++|++++..+ .+..+++|+.|+|++|.+.
T Consensus       266 ~~L-----------------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          266 ASL-----------------------------------------VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             TTC-----------------------------------------CEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CCC-----------------------------------------CEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            777                                         889999999986555 6788999999999999765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=1.2e-24  Score=242.50  Aligned_cols=246  Identities=21%  Similarity=0.172  Sum_probs=191.2

Q ss_pred             ccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCc
Q 045139          477 FSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKN  556 (820)
Q Consensus       477 L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n  556 (820)
                      ...++.++..++ .+|..+.   ++++.|++++|++++..+..+..++.+ +.|++++|.+++..+..+..+.       
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L-~~L~Ls~n~i~~i~~~~~~~l~-------  112 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHL-EILQLSRNHIRTIEIGAFNGLA-------  112 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSC-CEEECCSSCCCEECGGGGTTCS-------
T ss_pred             CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCC-CEEECCCCcCCccChhhccCCc-------
Confidence            345566665554 3444332   467777777777776666666666666 6777777766654443333333       


Q ss_pred             ccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCc-ccccC
Q 045139          557 MFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNS-FIGEL  635 (820)
Q Consensus       557 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~  635 (820)
                                     +|++|++++|++++..+..|..+++|++|++++|++.+..+..|..+++|++|++++|. +....
T Consensus       113 ---------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~  177 (440)
T 3zyj_A          113 ---------------NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS  177 (440)
T ss_dssp             ---------------SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             ---------------cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence                           78999999999987777788999999999999999988777889999999999999854 44444


Q ss_pred             CcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhcccc
Q 045139          636 PSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNL  715 (820)
Q Consensus       636 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  715 (820)
                      +..|.++++|++|++++|+++ .+|. +. .+++|++|+|++|++++..|..|..+++|+.|++++|++++..|..|.++
T Consensus       178 ~~~~~~l~~L~~L~L~~n~l~-~~~~-~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  254 (440)
T 3zyj_A          178 EGAFEGLSNLRYLNLAMCNLR-EIPN-LT-PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL  254 (440)
T ss_dssp             TTTTTTCSSCCEEECTTSCCS-SCCC-CT-TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred             cchhhcccccCeecCCCCcCc-cccc-cC-CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence            557888999999999999998 6674 44 68899999999999998888999999999999999999998888888887


Q ss_pred             ccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccc
Q 045139          716 TAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLT  793 (820)
Q Consensus       716 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~  793 (820)
                      ++|                                         +.|||++|++++..+ .+..+++|+.|+|++|.+.
T Consensus       255 ~~L-----------------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          255 QSL-----------------------------------------VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TTC-----------------------------------------CEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCC-----------------------------------------CEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            777                                         889999999986555 6788999999999999764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=6.2e-24  Score=243.45  Aligned_cols=258  Identities=24%  Similarity=0.376  Sum_probs=145.3

Q ss_pred             cceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceec
Q 045139          453 LNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDL  532 (820)
Q Consensus       453 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~l  532 (820)
                      ++.++++++.+. .+|..+.  ++|+.|++++|.++ .+|.    .+++|++|++++|++++. |.   .++.+ +.|++
T Consensus        42 l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l-p~---~l~~L-~~L~L  108 (622)
T 3g06_A           42 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGL-LELSI  108 (622)
T ss_dssp             CCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCC-CC---CCTTC-CEEEE
T ss_pred             CcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcC-CC---CCCCC-CEEEC
Confidence            455555555554 3343332  45555555555554 2333    124555555555555432 22   22333 44555


Q ss_pred             cCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCC
Q 045139          533 SANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIP  612 (820)
Q Consensus       533 s~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  612 (820)
                      ++|.+++ +|..+.                         +|+.|++++|++++ +|..   +++|++|++++|++++ +|
T Consensus       109 s~N~l~~-l~~~l~-------------------------~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~  157 (622)
T 3g06_A          109 FSNPLTH-LPALPS-------------------------GLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LP  157 (622)
T ss_dssp             CSCCCCC-CCCCCT-------------------------TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CC
T ss_pred             cCCcCCC-CCCCCC-------------------------CcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cC
Confidence            5554443 222222                         56667777776663 4432   3667777777776663 33


Q ss_pred             CCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCC
Q 045139          613 DSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQ  692 (820)
Q Consensus       613 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~  692 (820)
                      .   .+++|+.|++++|.+++ +|   ..+++|+.|++++|+++ .+|..    +++|+.|++++|.++ .+|..   ++
T Consensus       158 ~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~-~l~~~----~~~L~~L~L~~N~l~-~l~~~---~~  221 (622)
T 3g06_A          158 A---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLT-SLPAL---PS  221 (622)
T ss_dssp             C---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCS-SCCCC---CT
T ss_pred             C---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCC-CCCCc----cchhhEEECcCCccc-ccCCC---CC
Confidence            3   23556677777777664 44   34566777777777766 34432    456677777777766 34432   35


Q ss_pred             CCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeec
Q 045139          693 RIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGE  772 (820)
Q Consensus       693 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~  772 (820)
                      +|+.|++++|++++ +|   ..+++|                                         +.|+|++|+|+ .
T Consensus       222 ~L~~L~Ls~N~L~~-lp---~~l~~L-----------------------------------------~~L~Ls~N~L~-~  255 (622)
T 3g06_A          222 GLKELIVSGNRLTS-LP---VLPSEL-----------------------------------------KELMVSGNRLT-S  255 (622)
T ss_dssp             TCCEEECCSSCCSC-CC---CCCTTC-----------------------------------------CEEECCSSCCS-C
T ss_pred             CCCEEEccCCccCc-CC---CCCCcC-----------------------------------------cEEECCCCCCC-c
Confidence            67777777776663 44   122223                                         66777777776 4


Q ss_pred             CCCcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCcCccc
Q 045139          773 IPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLMRA  819 (820)
Q Consensus       773 ip~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~g~  819 (820)
                      +|.  .+++|+.|+|++|+|+ .+|..|.++++|+.|||++|+++|.
T Consensus       256 lp~--~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~  299 (622)
T 3g06_A          256 LPM--LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER  299 (622)
T ss_dssp             CCC--CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred             CCc--ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCc
Confidence            554  4566777777777776 5666677777777777777777653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=6.1e-24  Score=220.16  Aligned_cols=203  Identities=22%  Similarity=0.235  Sum_probs=177.7

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      ..+.+++++++++ .+|..+.  +++++|++++|++++..+..|+.+++|++|++++|++++..+..|.++++|++|+++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            5789999999998 5776554  689999999999998777799999999999999999997777778999999999999


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP  731 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~  731 (820)
                      +|++++..+..+. .+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|             
T Consensus        94 ~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------------  159 (270)
T 2o6q_A           94 DNKLQALPIGVFD-QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL-------------  159 (270)
T ss_dssp             SSCCCCCCTTTTT-TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred             CCcCCcCCHhHcc-cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc-------------
Confidence            9999955555555 79999999999999998888889999999999999999996666667777777             


Q ss_pred             CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEe
Q 045139          732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLD  810 (820)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~Ld  810 (820)
                                                  +.|+|++|++++..+ .+..+++|++|++++|++++..+..|..+++|+.|+
T Consensus       160 ----------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  211 (270)
T 2o6q_A          160 ----------------------------KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ  211 (270)
T ss_dssp             ----------------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             ----------------------------ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEE
Confidence                                        899999999996666 688999999999999999987777799999999999


Q ss_pred             CCCCcCccc
Q 045139          811 LSKNMLMRA  819 (820)
Q Consensus       811 Ls~N~l~g~  819 (820)
                      +++|++.+.
T Consensus       212 l~~N~~~c~  220 (270)
T 2o6q_A          212 LQENPWDCT  220 (270)
T ss_dssp             CCSSCBCCS
T ss_pred             ecCCCeeCC
Confidence            999998763

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=5.7e-27  Score=272.55  Aligned_cols=389  Identities=14%  Similarity=0.087  Sum_probs=206.0

Q ss_pred             hCCCCCCCEEEcCCCCCCCCCcccccccc-CCcCCccEEECcCC-CCCCchhhhhhccCCCCcEEEccCCcccCCCCC--
Q 045139          211 VSQLPSLTELQLRGCNLPSVIASSSVSFS-NSSRSLAHLDLSLN-DVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPD--  286 (820)
Q Consensus       211 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~~~~~L~~L~Ls~n-~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~--  286 (820)
                      ...+++|++|++++|.+++..+   ..+. .+ ++|++|++++| .+++.....+...+++|++|++++|.+++..+.  
T Consensus       101 ~~~~~~L~~L~L~~~~~~~~~~---~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l  176 (594)
T 2p1m_B          101 SSSYTWLEEIRLKRMVVTDDCL---ELIAKSF-KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL  176 (594)
T ss_dssp             HHHCTTCCEEEEESCBCCHHHH---HHHHHHC-TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGG
T ss_pred             HHhCCCCCeEEeeCcEEcHHHH---HHHHHhC-CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHH
Confidence            3467778888888777665544   3343 33 78888888877 454433334443344888888888887643321  


Q ss_pred             -CCCCCCCCCCEEECCCCC--CC--CcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCC----
Q 045139          287 -SAFPNPTSLSYLDLSNNQ--LV--SVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNML----  357 (820)
Q Consensus       287 -~~l~~l~~L~~L~Ls~n~--l~--~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l----  357 (820)
                       .....+++|++|++++|.  ++  .++..+..+++|++|++++|...+.++..+..++     +|+.|+++.+..    
T Consensus       177 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~-----~L~~L~l~~~~~~~~~  251 (594)
T 2p1m_B          177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAP-----QLEELGTGGYTAEVRP  251 (594)
T ss_dssp             GGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCT-----TCSEEECSBCCCCCCH
T ss_pred             HHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCC-----cceEcccccccCccch
Confidence             113366788888888876  32  2233345668888888887733233666666666     777777654431    


Q ss_pred             ---cccCCCCcCcCCCcEEe-cCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEe
Q 045139          358 ---RGSLPDITLFSSLKELH-LYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLD  433 (820)
Q Consensus       358 ---~~~~p~~~~l~~L~~L~-l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~  433 (820)
                         .+..+.+..+++|+.|. +.          .. ..+.++..+..+++|+.|++++|.+++......+..+++|++|+
T Consensus       252 ~~~~~l~~~l~~~~~L~~Ls~~~----------~~-~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~  320 (594)
T 2p1m_B          252 DVYSGLSVALSGCKELRCLSGFW----------DA-VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLW  320 (594)
T ss_dssp             HHHHHHHHHHHTCTTCCEEECCB----------TC-CGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEE
T ss_pred             hhHHHHHHHHhcCCCcccccCCc----------cc-chhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEe
Confidence               11111133344444331 11          00 01122223333444444544444443322221233444444444


Q ss_pred             CcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcCCCcCC
Q 045139          434 LSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFT  513 (820)
Q Consensus       434 Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~  513 (820)
                      +++|                                                 +.+.....+...+++|++|+++++.-.
T Consensus       321 l~~~-------------------------------------------------~~~~~l~~l~~~~~~L~~L~L~~~~~~  351 (594)
T 2p1m_B          321 VLDY-------------------------------------------------IEDAGLEVLASTCKDLRELRVFPSEPF  351 (594)
T ss_dssp             EEGG-------------------------------------------------GHHHHHHHHHHHCTTCCEEEEECSCTT
T ss_pred             CcCc-------------------------------------------------cCHHHHHHHHHhCCCCCEEEEecCccc
Confidence            4443                                                 221111112222345555555332100


Q ss_pred             CCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccCcccc-
Q 045139          514 GMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSK-  592 (820)
Q Consensus       514 ~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-  592 (820)
                      |.                ...+.+++.                    .+..+.... .+|+.|+++.|.+++..+..+. 
T Consensus       352 g~----------------~~~~~l~~~--------------------~l~~l~~~~-~~L~~L~~~~~~l~~~~~~~l~~  394 (594)
T 2p1m_B          352 VM----------------EPNVALTEQ--------------------GLVSVSMGC-PKLESVLYFCRQMTNAALITIAR  394 (594)
T ss_dssp             CS----------------SCSSCCCHH--------------------HHHHHHHHC-TTCCEEEEEESCCCHHHHHHHHH
T ss_pred             cc----------------ccCCCCCHH--------------------HHHHHHHhc-hhHHHHHHhcCCcCHHHHHHHHh
Confidence            00                000000000                    000000000 1566666666666655444443 


Q ss_pred             cCCCCcEEEcC--C----Ceeeec-----CCCCcccccCCcEEeccCCcccccCCcchhc-CCCCCEEECCCCcCccccC
Q 045139          593 NWQKLTVLNLA--N----NKFSGK-----IPDSMDFNCMMLSLHLRNNSFIGELPSSVKS-FTQLTVLDLGHNKISGIIP  660 (820)
Q Consensus       593 ~l~~L~~L~Ls--~----N~l~~~-----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p  660 (820)
                      .+++|++|+++  +    +++++.     ++..+..+++|++|++++ .+++..+..+.. +++|++|++++|.+++..+
T Consensus       395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~  473 (594)
T 2p1m_B          395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM  473 (594)
T ss_dssp             HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHH
T ss_pred             hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHH
Confidence            46777777777  3    344421     112255677888888866 666555555555 7888888888888876666


Q ss_pred             cchhcCCCCccEEEcCcccccccCCc-ccCCCCCCCEEeCcCCCCcc
Q 045139          661 AWIGDSLPDLVVLSLRSNNFHGRVPV-QVCHLQRIQVLDLSQNNISG  706 (820)
Q Consensus       661 ~~l~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~  706 (820)
                      ..+...+++|++|++++|++++..+. .+..+++|+.|++++|+++.
T Consensus       474 ~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  520 (594)
T 2p1m_B          474 HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF  520 (594)
T ss_dssp             HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred             HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence            55533678888888888888654333 34457888888888888753

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=3e-25  Score=249.60  Aligned_cols=188  Identities=21%  Similarity=0.173  Sum_probs=135.6

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      +|++|++++|.+++..     ..++|++|++++|.+++..+..   +++|+.|++++|.+++..|..++.+++|++|+++
T Consensus        81 ~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  152 (487)
T 3oja_A           81 TLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK  152 (487)
T ss_dssp             TCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECT
T ss_pred             CCCEEEecCCcCCCCC-----CCCCcCEEECcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECC
Confidence            6777777777776432     2267778888888777655543   4677788888888887777777778888888888


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP  731 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~  731 (820)
                      +|.+++.+|..+...+++|++|+|++|.+++..+  ...+++|+.|+|++|++++ +|..+..++.|             
T Consensus       153 ~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L-------------  216 (487)
T 3oja_A          153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGV-------------  216 (487)
T ss_dssp             TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTC-------------
T ss_pred             CCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCc-------------
Confidence            8888877777665457788888888888776522  3357788888888888875 44446666655             


Q ss_pred             CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccc-cCCcccccCCCCCCeE
Q 045139          732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLT-GPIPSKIGGLTLLNSL  809 (820)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~-~~ip~~l~~l~~L~~L  809 (820)
                                                  +.|||++|++++ +| .++.+++|+.|++++|.+. +.+|..+..++.|+.+
T Consensus       217 ----------------------------~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l  267 (487)
T 3oja_A          217 ----------------------------TWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV  267 (487)
T ss_dssp             ----------------------------SEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHH
T ss_pred             ----------------------------cEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEE
Confidence                                        778888888874 55 7777788888888888877 6667777777777777


Q ss_pred             eCC
Q 045139          810 DLS  812 (820)
Q Consensus       810 dLs  812 (820)
                      +++
T Consensus       268 ~~~  270 (487)
T 3oja_A          268 AKQ  270 (487)
T ss_dssp             HHH
T ss_pred             ecc
Confidence            664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=1.2e-24  Score=244.53  Aligned_cols=234  Identities=18%  Similarity=0.217  Sum_probs=173.7

Q ss_pred             cCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCcc
Q 045139          399 GQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFS  478 (820)
Q Consensus       399 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  478 (820)
                      ..+++|+.|++++|.+++..|. .|..+++|++|++++|.+++..+                          +..+++|+
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~--------------------------l~~l~~L~   83 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNVLYETLD--------------------------LESLSTLR   83 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGG-GGTTCTTCCEEECTTSCCEEEEE--------------------------CTTCTTCC
T ss_pred             ccCCCccEEEeeCCcCCCCCHH-HHhCCCCCCEEEeeCCCCCCCcc--------------------------cccCCCCC
Confidence            3444788888888888775444 67788888888888887754221                          44556666


Q ss_pred             EEecCCCCccCCCCchhhccCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCccc
Q 045139          479 ELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMF  558 (820)
Q Consensus       479 ~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~  558 (820)
                      +|++++|.+++..+.      ++|+.|++++|.+++..+..                         +.            
T Consensus        84 ~L~Ls~N~l~~l~~~------~~L~~L~L~~N~l~~~~~~~-------------------------l~------------  120 (487)
T 3oja_A           84 TLDLNNNYVQELLVG------PSIETLHAANNNISRVSCSR-------------------------GQ------------  120 (487)
T ss_dssp             EEECCSSEEEEEEEC------TTCCEEECCSSCCCCEEECC-------------------------CS------------
T ss_pred             EEEecCCcCCCCCCC------CCcCEEECcCCcCCCCCccc-------------------------cC------------
Confidence            666666666543221      46777777777665433220                         00            


Q ss_pred             ccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcc-cccCCcEEeccCCcccccCCc
Q 045139          559 SGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMD-FNCMMLSLHLRNNSFIGELPS  637 (820)
Q Consensus       559 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~  637 (820)
                                   +|+.|++++|.+++..|..++.+++|++|++++|++++.+|..+. .+++|++|+|++|.+++..+ 
T Consensus       121 -------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-  186 (487)
T 3oja_A          121 -------------GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-  186 (487)
T ss_dssp             -------------SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-
T ss_pred             -------------CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-
Confidence                         678888888888888888888889999999999999888888776 78899999999999887633 


Q ss_pred             chhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCc-cccchhccccc
Q 045139          638 SVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNIS-GTVPQCLNNLT  716 (820)
Q Consensus       638 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~  716 (820)
                       ...+++|++|+|++|++++ +|..+. .+++|+.|++++|++++ +|..+..+++|+.|++++|++. +.+|..+..++
T Consensus       187 -~~~l~~L~~L~Ls~N~l~~-~~~~~~-~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~  262 (487)
T 3oja_A          187 -QVVFAKLKTLDLSSNKLAF-MGPEFQ-SAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ  262 (487)
T ss_dssp             -CCCCTTCCEEECCSSCCCE-ECGGGG-GGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCH
T ss_pred             -cccCCCCCEEECCCCCCCC-CCHhHc-CCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCC
Confidence             4468899999999999986 444566 68999999999999985 7778888899999999999988 66777777776


Q ss_pred             cccc
Q 045139          717 AMTA  720 (820)
Q Consensus       717 ~L~~  720 (820)
                      .+..
T Consensus       263 ~L~~  266 (487)
T 3oja_A          263 RVQT  266 (487)
T ss_dssp             HHHH
T ss_pred             CCcE
Confidence            6643

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=7.4e-23  Score=212.00  Aligned_cols=216  Identities=29%  Similarity=0.364  Sum_probs=118.5

Q ss_pred             CCCcccCceEecCCCCcEEEEEcCCCCCCCCcccccccccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCC
Q 045139           73 KDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGF  152 (820)
Q Consensus        73 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l  152 (820)
                      .++|.|.|+.|.. .+.++.+++++   ..++ .+|..+.  +.+++|++++|.+.+. .+..++++++|++|++++|.+
T Consensus         2 ~~~C~~~~~~C~c-~~~~~~l~~~~---~~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l   73 (270)
T 2o6q_A            2 EALCKKDGGVCSC-NNNKNSVDCSS---KKLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKL   73 (270)
T ss_dssp             CCCBGGGTCSBEE-ETTTTEEECTT---SCCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCC
T ss_pred             CccCCCCCCCCEe-CCCCCEEEccC---CCCC-ccCCCCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCcc
Confidence            4789999998853 23456777777   5555 3555443  5677777777777663 444677777777777777777


Q ss_pred             CCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCc
Q 045139          153 TGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIA  232 (820)
Q Consensus       153 ~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~  232 (820)
                      ++..+..+..+++|++|++++|                         .+...  .+..+..+++|++|++++|.+++..+
T Consensus        74 ~~i~~~~~~~l~~L~~L~l~~n-------------------------~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~  126 (270)
T 2o6q_A           74 QTLPAGIFKELKNLETLWVTDN-------------------------KLQAL--PIGVFDQLVNLAELRLDRNQLKSLPP  126 (270)
T ss_dssp             SCCCTTTTSSCTTCCEEECCSS-------------------------CCCCC--CTTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred             CeeChhhhcCCCCCCEEECCCC-------------------------cCCcC--CHhHcccccCCCEEECCCCccCeeCH
Confidence            7444444566666666666665                         22221  11234445555555555555554444


Q ss_pred             cccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcch-h
Q 045139          233 SSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-S  311 (820)
Q Consensus       233 ~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~-~  311 (820)
                         ..+..+ +                         +|++|++++|.++ .+|...|..+++|++|++++|+++.+|. .
T Consensus       127 ---~~~~~l-~-------------------------~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  176 (270)
T 2o6q_A          127 ---RVFDSL-T-------------------------KLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGA  176 (270)
T ss_dssp             ---TTTTTC-T-------------------------TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             ---HHhCcC-c-------------------------CCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeChhH
Confidence               222333 3                         4444444444444 3333334455555555555555554433 2


Q ss_pred             hhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCc
Q 045139          312 FRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLR  358 (820)
Q Consensus       312 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~  358 (820)
                      |..+++|++|++++|++++..+..|..++     +|+.|++++|++.
T Consensus       177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~l~~N~~~  218 (270)
T 2o6q_A          177 FDKLTELKTLKLDNNQLKRVPEGAFDSLE-----KLKMLQLQENPWD  218 (270)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCT-----TCCEEECCSSCBC
T ss_pred             hccCCCcCEEECCCCcCCcCCHHHhcccc-----CCCEEEecCCCee
Confidence            44455555555555555544444444444     4555555555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=4.4e-23  Score=215.57  Aligned_cols=198  Identities=23%  Similarity=0.227  Sum_probs=175.0

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      +++.++++++.++ .+|..+.  +++++|++++|++++..|..|..+++|++|++++|.+++..+.  ..+++|++|+++
T Consensus        11 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls   85 (290)
T 1p9a_G           11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLS   85 (290)
T ss_dssp             TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECC
T ss_pred             CccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECC
Confidence            7899999999998 5666554  7899999999999988889999999999999999999875443  789999999999


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP  731 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~  731 (820)
                      +|+++ .+|..+. .+++|++|++++|++++..|..|..+++|++|++++|++++..|..|..+++|             
T Consensus        86 ~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-------------  150 (290)
T 1p9a_G           86 HNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL-------------  150 (290)
T ss_dssp             SSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-------------
T ss_pred             CCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC-------------
Confidence            99998 7888776 79999999999999998878889999999999999999997766677777777             


Q ss_pred             CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEe
Q 045139          732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLD  810 (820)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~Ld  810 (820)
                                                  +.|+|++|++++..+ .+..+++|+.|+|++|+++ .+|..+..+.+|+.++
T Consensus       151 ----------------------------~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~  201 (290)
T 1p9a_G          151 ----------------------------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAF  201 (290)
T ss_dssp             ----------------------------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEE
T ss_pred             ----------------------------CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEE
Confidence                                        899999999995444 5688999999999999999 7888888899999999


Q ss_pred             CCCCcCcc
Q 045139          811 LSKNMLMR  818 (820)
Q Consensus       811 Ls~N~l~g  818 (820)
                      |++|++.+
T Consensus       202 L~~Np~~C  209 (290)
T 1p9a_G          202 LHGNPWLC  209 (290)
T ss_dssp             CCSCCBCC
T ss_pred             eCCCCccC
Confidence            99999875

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=1.6e-22  Score=210.39  Aligned_cols=183  Identities=20%  Similarity=0.244  Sum_probs=151.9

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      +|++|++++|++++..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  132 (276)
T 2z62_A           53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA  132 (276)
T ss_dssp             TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC
T ss_pred             CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECc
Confidence            78889999998887777788889999999999999988888889999999999999999988777788899999999999


Q ss_pred             CCcCccc-cCcchhcCCCCccEEEcCcccccccCCcccCCCCCCC----EEeCcCCCCccccchhccccccccccccCCc
Q 045139          652 HNKISGI-IPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQ----VLDLSQNNISGTVPQCLNNLTAMTANKSSNA  726 (820)
Q Consensus       652 ~N~l~~~-~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~  726 (820)
                      +|++++. +|..+. .+++|++|++++|++++..+..+..+++|+    .|++++|++++..+..+.. .+|        
T Consensus       133 ~n~l~~~~l~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L--------  202 (276)
T 2z62_A          133 HNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRL--------  202 (276)
T ss_dssp             SSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCE--------
T ss_pred             CCccceecCchhhc-cCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-Ccc--------
Confidence            9999863 688887 789999999999999887777777777776    8999999998554444332 234        


Q ss_pred             ccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCc
Q 045139          727 MIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIP  797 (820)
Q Consensus       727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip  797 (820)
                                                       +.|++++|++++..+ .+..+++|+.|++++|.+++..|
T Consensus       203 ---------------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          203 ---------------------------------KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             ---------------------------------EEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             ---------------------------------cEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence                                             889999999985555 57889999999999999987654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=4.4e-23  Score=213.85  Aligned_cols=142  Identities=18%  Similarity=0.204  Sum_probs=73.9

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      +++.|++++|.++. + ..+..+++|++|++++|++++ + ..++.+++|++|++++|.+++..+..+.++++|++|+++
T Consensus        42 ~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  117 (272)
T 3rfs_A           42 SIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV  117 (272)
T ss_dssp             TCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             ceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence            45555555555542 2 234555555555555555553 1 245555555555555555555554455555555555555


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccc
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAM  718 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  718 (820)
                      +|++++..|..+. .+++|++|++++|++++..|..+..+++|+.|++++|++++..|..+.+++.|
T Consensus       118 ~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  183 (272)
T 3rfs_A          118 ENQLQSLPDGVFD-KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL  183 (272)
T ss_dssp             TSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCcCCccCHHHhc-cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC
Confidence            5555543333333 45555555555555554444445555555555555555554444444444444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=1.4e-23  Score=222.13  Aligned_cols=203  Identities=23%  Similarity=0.238  Sum_probs=172.0

Q ss_pred             cccEEEccCCccccccCccc--ccCCCCcEEEcCCCeeeecCC----CCcccccCCcEEeccCCcccccCCcchhcCCCC
Q 045139          572 HFRYLDLSDNLLSGELPNCS--KNWQKLTVLNLANNKFSGKIP----DSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQL  645 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  645 (820)
                      +|++|++++|.+++..|..+  ..+++|++|++++|++++..+    ..+..+++|++|++++|++.+..|..++.+++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            69999999999999999888  899999999999999997655    344578999999999999999989999999999


Q ss_pred             CEEECCCCcCccc--cC--cchhcCCCCccEEEcCcccccccCCc----ccCCCCCCCEEeCcCCCCccccchhcccccc
Q 045139          646 TVLDLGHNKISGI--IP--AWIGDSLPDLVVLSLRSNNFHGRVPV----QVCHLQRIQVLDLSQNNISGTVPQCLNNLTA  717 (820)
Q Consensus       646 ~~L~Ls~N~l~~~--~p--~~l~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  717 (820)
                      ++|++++|++.+.  ++  ..+. .+++|++|++++|+++. +|.    .+..+++|++||+++|++++.+|..+..+..
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~-~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  249 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPH-KFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW  249 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTT-SSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred             CEEECCCCCCccchhhhHHHhhh-cCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence            9999999998753  22  2234 68999999999999973 333    2577899999999999999888888776642


Q ss_pred             ccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCC
Q 045139          718 MTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPI  796 (820)
Q Consensus       718 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~i  796 (820)
                      +                                      +.|+.|+|++|+++ .+| .+.  ++|++|+|++|++++. 
T Consensus       250 ~--------------------------------------~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-  287 (310)
T 4glp_A          250 S--------------------------------------SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-  287 (310)
T ss_dssp             C--------------------------------------TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-
T ss_pred             c--------------------------------------CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-
Confidence            2                                      23489999999999 788 665  8999999999999964 


Q ss_pred             cccccCCCCCCeEeCCCCcCccc
Q 045139          797 PSKIGGLTLLNSLDLSKNMLMRA  819 (820)
Q Consensus       797 p~~l~~l~~L~~LdLs~N~l~g~  819 (820)
                      |. +..+++|+.|++++|+++.+
T Consensus       288 ~~-~~~l~~L~~L~L~~N~l~~~  309 (310)
T 4glp_A          288 PQ-PDELPEVDNLTLDGNPFLVP  309 (310)
T ss_dssp             CC-TTSCCCCSCEECSSTTTSCC
T ss_pred             ch-hhhCCCccEEECcCCCCCCC
Confidence            44 67889999999999999753

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=2.1e-22  Score=208.75  Aligned_cols=200  Identities=20%  Similarity=0.211  Sum_probs=173.8

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      .+..+++..+.+.+..  ....+++|+.|++++|.+.. + ..++.+++|++|++++|.+.+.  ..+..+++|++|+++
T Consensus        20 ~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~   93 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT   93 (272)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred             HHHHHHhcCccccccc--ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence            4556677777776543  46778999999999999883 3 3689999999999999999863  479999999999999


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP  731 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~  731 (820)
                      +|++++..|..+. .+++|++|++++|++++..|..+..+++|++|++++|++++..|..+.+++.|             
T Consensus        94 ~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------------  159 (272)
T 3rfs_A           94 GNQLQSLPNGVFD-KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL-------------  159 (272)
T ss_dssp             TSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred             CCccCccChhHhc-CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC-------------
Confidence            9999976666666 79999999999999998888889999999999999999997777777887777             


Q ss_pred             CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEe
Q 045139          732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLD  810 (820)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~Ld  810 (820)
                                                  +.|++++|++++..| .++.+++|++|++++|++++..|..|+.+++|++|+
T Consensus       160 ----------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  211 (272)
T 3rfs_A          160 ----------------------------TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW  211 (272)
T ss_dssp             ----------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             ----------------------------CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEE
Confidence                                        899999999997666 678999999999999999998888889999999999


Q ss_pred             CCCCcCccc
Q 045139          811 LSKNMLMRA  819 (820)
Q Consensus       811 Ls~N~l~g~  819 (820)
                      +++|+++|.
T Consensus       212 l~~N~~~~~  220 (272)
T 3rfs_A          212 LHDNPWDCT  220 (272)
T ss_dssp             CCSSCBCCC
T ss_pred             ccCCCcccc
Confidence            999999875

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=4.4e-22  Score=203.74  Aligned_cols=179  Identities=18%  Similarity=0.203  Sum_probs=124.4

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      ..++++++++.++ .+|..+.  +.++.|++++|++.+..+..|+.+++|++|++++|.+++..|..+..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            5677788888777 5555544  567777777777777667677777777777777777777777677777777777777


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP  731 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~  731 (820)
                      +|++++..+..+. .+++|++|+|++|++++..+..+..+++|+.|++++|++++..|..+.++++|             
T Consensus        92 ~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------  157 (251)
T 3m19_A           92 NNQLASLPLGVFD-HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL-------------  157 (251)
T ss_dssp             TSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred             CCcccccChhHhc-ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCC-------------
Confidence            7777754444444 57777777777777776555556677777777777777775555556665555             


Q ss_pred             CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccC
Q 045139          732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGP  795 (820)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~  795 (820)
                                                  +.|||++|++++..| .+..+++|+.|+|++|.+++.
T Consensus       158 ----------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          158 ----------------------------QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             ----------------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             ----------------------------CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence                                        667777777775555 666677777777777777654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=1.1e-23  Score=230.55  Aligned_cols=250  Identities=17%  Similarity=0.207  Sum_probs=150.0

Q ss_pred             CCchhhhcCCCccEEecCCCCccCCCCchhh---ccCCCcEEEEcCCCcCC---CCCCcccccccCCCCceeccCCcCcC
Q 045139          466 QFPKWLQTQNKFSELDVSAAEISDTVPNWFW---DLSPNLYYLNLSHNHFT---GMLPDLSQKFTAYPPEIDLSANSFEG  539 (820)
Q Consensus       466 ~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~---~~~~~L~~L~ls~n~l~---~~~p~~~~~~~~l~~~l~ls~n~~~~  539 (820)
                      .++..+..+++|++|++++|.+++..+..+.   ..+++|++|++++|.+.   +.+|..+..+..              
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~--------------   88 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ--------------   88 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHH--------------
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHH--------------
Confidence            4667778888888888888888766444322   12356777777775432   222221110000              


Q ss_pred             CCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCcccc----ccCcccccCCCCcEEEcCCCeeeecCCCCc
Q 045139          540 PIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSG----ELPNCSKNWQKLTVLNLANNKFSGKIPDSM  615 (820)
Q Consensus       540 ~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  615 (820)
                          .+..                      ..+|++|++++|.+++    .+|..+..+++|++|+|++|.+++..+..+
T Consensus        89 ----~l~~----------------------~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l  142 (386)
T 2ca6_A           89 ----ALLK----------------------CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI  142 (386)
T ss_dssp             ----HHTT----------------------CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHH
T ss_pred             ----HHhh----------------------CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHH
Confidence                0000                      0167777777777776    366677777777777777777764433333


Q ss_pred             c----cc---------cCCcEEeccCCccc-ccCC---cchhcCCCCCEEECCCCcCcc-----ccCcchhcCCCCccEE
Q 045139          616 D----FN---------CMMLSLHLRNNSFI-GELP---SSVKSFTQLTVLDLGHNKISG-----IIPAWIGDSLPDLVVL  673 (820)
Q Consensus       616 ~----~l---------~~L~~L~Ls~N~l~-~~~p---~~l~~l~~L~~L~Ls~N~l~~-----~~p~~l~~~l~~L~~L  673 (820)
                      .    .+         ++|++|++++|+++ +.+|   ..+..+++|++|++++|+++.     .+|..+. .+++|++|
T Consensus       143 ~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~-~~~~L~~L  221 (386)
T 2ca6_A          143 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA-YCQELKVL  221 (386)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG-GCTTCCEE
T ss_pred             HHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh-cCCCccEE
Confidence            3    33         67777777777776 3334   355667777777777777762     2333454 56777777


Q ss_pred             EcCccccc----ccCCcccCCCCCCCEEeCcCCCCccc----cchhccc--cccccccccCCcccccCCccccccCceeE
Q 045139          674 SLRSNNFH----GRVPVQVCHLQRIQVLDLSQNNISGT----VPQCLNN--LTAMTANKSSNAMIRYPLRTDYYNDHALL  743 (820)
Q Consensus       674 ~L~~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~--l~~L~~~~~~~~~~~~~~~~~~~~~~~~~  743 (820)
                      +|++|.++    +.+|..+..+++|+.|+|++|++++.    +|..+..  ++.|                         
T Consensus       222 ~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L-------------------------  276 (386)
T 2ca6_A          222 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL-------------------------  276 (386)
T ss_dssp             ECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCC-------------------------
T ss_pred             ECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCe-------------------------
Confidence            77777764    45666666677777777777776654    3333321  3333                         


Q ss_pred             EeeccccccccccCceEEEECCCCcCee----cCC-Cc-ccccCCCEEeCCCCccccCCc
Q 045139          744 VWKRKDSEYRNTLGLVKSIDLSSNRLYG----EIP-EV-TSLVGLISLNLSKNSLTGPIP  797 (820)
Q Consensus       744 ~~~~~~~~~~~~l~~L~~LdLs~N~l~~----~ip-~l-~~l~~L~~L~Ls~N~l~~~ip  797 (820)
                                      +.|+|++|++++    .+| .+ .++++|++|++++|.+++..|
T Consensus       277 ----------------~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          277 ----------------QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             ----------------CEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             ----------------EEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence                            667777777765    355 44 456677777777777766553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=6.1e-22  Score=201.14  Aligned_cols=196  Identities=18%  Similarity=0.182  Sum_probs=170.2

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCe-eeecCCCCcccccCCcEEeccC-CcccccCCcchhcCCCCCEEE
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNK-FSGKIPDSMDFNCMMLSLHLRN-NSFIGELPSSVKSFTQLTVLD  649 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~  649 (820)
                      ++++|++++|++++..+..|.++++|++|++++|+ +++..+..|..+++|++|++++ |++++..+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            78999999999998777799999999999999997 8877777999999999999999 999988888999999999999


Q ss_pred             CCCCcCccccCcchhcCCCCcc---EEEcCcc-cccccCCcccCCCCCCC-EEeCcCCCCccccchhccccccccccccC
Q 045139          650 LGHNKISGIIPAWIGDSLPDLV---VLSLRSN-NFHGRVPVQVCHLQRIQ-VLDLSQNNISGTVPQCLNNLTAMTANKSS  724 (820)
Q Consensus       650 Ls~N~l~~~~p~~l~~~l~~L~---~L~L~~N-~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~  724 (820)
                      +++|++++ +|. +. .+++|+   +|++++| ++++..+..|..+++|+ .|++++|+++ .+|......+.|      
T Consensus       112 l~~n~l~~-lp~-~~-~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L------  181 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LT-KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKL------  181 (239)
T ss_dssp             EEEECCCS-CCC-CT-TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEE------
T ss_pred             CCCCCCcc-ccc-cc-cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCC------
Confidence            99999995 776 55 688888   9999999 99977777899999999 9999999998 666533222444      


Q ss_pred             CcccccCCccccccCceeEEeeccccccccccCceEEEECCCCc-CeecCC-Ccccc-cCCCEEeCCCCccccCCccccc
Q 045139          725 NAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNR-LYGEIP-EVTSL-VGLISLNLSKNSLTGPIPSKIG  801 (820)
Q Consensus       725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~-l~~~ip-~l~~l-~~L~~L~Ls~N~l~~~ip~~l~  801 (820)
                                                         +.|++++|+ +++..+ .+..+ ++|+.|++++|++++ +|..  
T Consensus       182 -----------------------------------~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--  223 (239)
T 2xwt_C          182 -----------------------------------DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--  223 (239)
T ss_dssp             -----------------------------------EEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--
T ss_pred             -----------------------------------CEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--
Confidence                                               899999995 986556 78899 999999999999995 5554  


Q ss_pred             CCCCCCeEeCCCCc
Q 045139          802 GLTLLNSLDLSKNM  815 (820)
Q Consensus       802 ~l~~L~~LdLs~N~  815 (820)
                      .+++|+.|+++++.
T Consensus       224 ~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          224 GLEHLKELIARNTW  237 (239)
T ss_dssp             TCTTCSEEECTTC-
T ss_pred             HhccCceeeccCcc
Confidence            68899999999874

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=3e-21  Score=201.57  Aligned_cols=176  Identities=26%  Similarity=0.289  Sum_probs=136.7

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      .++.|++++|.+++..+..+..+++|++|++++|++++..+.  +.+++|++|++++|+++ .+|..+..+++|++|+++
T Consensus        32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~  108 (290)
T 1p9a_G           32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS  108 (290)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECC
T ss_pred             CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECC
Confidence            677888888888877777888888888888888888764432  67788888888888887 567777888888888888


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP  731 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~  731 (820)
                      +|++++..|..+. .+++|++|+|++|++++..+..+..+++|+.|++++|++++..+..+.+++.|             
T Consensus       109 ~N~l~~l~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L-------------  174 (290)
T 1p9a_G          109 FNRLTSLPLGALR-GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL-------------  174 (290)
T ss_dssp             SSCCCCCCSSTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC-------------
T ss_pred             CCcCcccCHHHHc-CCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCC-------------
Confidence            8888855556665 68888888888888887666677788888888888888885444555666666             


Q ss_pred             CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccc
Q 045139          732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLT  793 (820)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~  793 (820)
                                                  +.|+|++|+++ .+| .+..+..|+.|+|++|.+.
T Consensus       175 ----------------------------~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          175 ----------------------------DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             ----------------------------CEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ----------------------------CEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence                                        78888888887 667 7777788888888888765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=1.9e-21  Score=205.18  Aligned_cols=190  Identities=21%  Similarity=0.343  Sum_probs=147.2

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      +++.|++++|.++. +| .+..+++|++|++++|++++..+  +..+++|++|++++|++++.  ..+..+++|++|+++
T Consensus        42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLT  115 (308)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECT
T ss_pred             CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECC
Confidence            78888888888874 44 57888888888888888885444  88888888888888888753  368888888888888


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP  731 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~  731 (820)
                      +|++++ +|. +. .+++|++|++++|++++..+  +..+++|+.|++++|++++. |. +.+++.|             
T Consensus       116 ~n~l~~-~~~-l~-~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L-------------  175 (308)
T 1h6u_A          116 STQITD-VTP-LA-GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKL-------------  175 (308)
T ss_dssp             TSCCCC-CGG-GT-TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTC-------------
T ss_pred             CCCCCC-chh-hc-CCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCC-------------
Confidence            888875 443 54 68888888888888885443  77888888888888888753 33 5555555             


Q ss_pred             CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCccccCCcccccCCCCCCeEeC
Q 045139          732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDL  811 (820)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdL  811 (820)
                                                  +.|++++|+++ .+|.+..+++|+.|++++|++++..|  +..+++|++|++
T Consensus       176 ----------------------------~~L~l~~n~l~-~~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l  224 (308)
T 1h6u_A          176 ----------------------------TTLKADDNKIS-DISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL  224 (308)
T ss_dssp             ----------------------------CEEECCSSCCC-CCGGGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEE
T ss_pred             ----------------------------CEEECCCCccC-cChhhcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEc
Confidence                                        78888888887 44457788888888888888886543  778888888888


Q ss_pred             CCCcCcc
Q 045139          812 SKNMLMR  818 (820)
Q Consensus       812 s~N~l~g  818 (820)
                      ++|++++
T Consensus       225 ~~N~i~~  231 (308)
T 1h6u_A          225 TNQTITN  231 (308)
T ss_dssp             EEEEEEC
T ss_pred             cCCeeec
Confidence            8888876

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=4.7e-21  Score=196.07  Aligned_cols=177  Identities=20%  Similarity=0.263  Sum_probs=95.0

Q ss_pred             CcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcC
Q 045139          597 LTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLR  676 (820)
Q Consensus       597 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~  676 (820)
                      .++++++++.++ .+|..+.  +.++.|++++|.+.+..+..+.++++|++|++++|++++..|..+. .+++|++|+++
T Consensus        16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~   91 (251)
T 3m19_A           16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD-DLTELGTLGLA   91 (251)
T ss_dssp             GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECT
T ss_pred             CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc-cCCcCCEEECC
Confidence            445555555555 3444333  3555555555555555555555555555555555555544444443 45555555555


Q ss_pred             cccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeecccccccccc
Q 045139          677 SNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTL  756 (820)
Q Consensus       677 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  756 (820)
                      +|++++..+..+..+++|++|++++|++++..+..+.+++.|                                      
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--------------------------------------  133 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL--------------------------------------  133 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------------------------------
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc--------------------------------------
Confidence            555554444555555555555555555554433344444444                                      


Q ss_pred             CceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCcCcc
Q 045139          757 GLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLMR  818 (820)
Q Consensus       757 ~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~g  818 (820)
                         +.|+|++|++++..| .++.+++|++|+|++|++++..|..|..+++|++|++++|++++
T Consensus       134 ---~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          134 ---KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             ---CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             ---cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence               555555555554333 45555555555555555555544455555555555555555554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=1.4e-22  Score=217.38  Aligned_cols=265  Identities=20%  Similarity=0.187  Sum_probs=198.4

Q ss_pred             CCCcccCceEecCCCCcEEEEEcCCCCCCCCcccccccccCC--CCCCEEECcCCCCCCcccCccccCCCCCCEEeccCC
Q 045139           73 KDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGL--QHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNA  150 (820)
Q Consensus        73 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~l~g~i~~~l~~l--~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n  150 (820)
                      .-|.+|.++.|+  ...++.+++++   +.+.   +..+.++  +++++|++++|.+.+. .+ .+..+++|++|++++|
T Consensus        34 ~vc~~W~~~~~~--~~~~~~l~l~~---~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~-~~-~~~~~~~L~~L~L~~~  103 (336)
T 2ast_B           34 GVCKRWYRLASD--ESLWQTLDLTG---KNLH---PDVTGRLLSQGVIAFRCPRSFMDQP-LA-EHFSPFRVQHMDLSNS  103 (336)
T ss_dssp             SSCHHHHHHHTC--STTSSEEECTT---CBCC---HHHHHHHHHTTCSEEECTTCEECSC-CC-SCCCCBCCCEEECTTC
T ss_pred             HHHHHHHHHhcC--chhheeecccc---ccCC---HHHHHhhhhccceEEEcCCcccccc-ch-hhccCCCCCEEEccCC
Confidence            457789998875  33578899988   5555   4566777  8999999999999874 44 4678999999999999


Q ss_pred             CCCCC-CCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCeeeCCCc-cCCCCccHHHHhCCCCCCCEEEcCCC-CC
Q 045139          151 GFTGR-VPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQV-NLGEATDWLQVVSQLPSLTELQLRGC-NL  227 (820)
Q Consensus       151 ~l~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~l~~l~~L~~L~Ls~n-~l  227 (820)
                      .+++. +|..+..+++|++|++++| ......+..++.+++|++|++++| .+++ ..++..+.++++|++|++++| .+
T Consensus       104 ~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~~~L~~L~L~~~~~l~~-~~l~~~~~~~~~L~~L~l~~~~~l  181 (336)
T 2ast_B          104 VIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSE-FALQTLLSSCSRLDELNLSWCFDF  181 (336)
T ss_dssp             EECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCH-HHHHHHHHHCTTCCEEECCCCTTC
T ss_pred             CcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHhcCCCCCEEECCCCCCCCH-HHHHHHHhcCCCCCEEcCCCCCCc
Confidence            98866 8888999999999999999 444456667888999999999998 5553 236677888999999999999 88


Q ss_pred             CCC-CccccccccCCcC-CccEEECcCC--CCC-CchhhhhhccCCCCcEEEccCCc-ccCCCCCCCCCCCCCCCEEECC
Q 045139          228 PSV-IASSSVSFSNSSR-SLAHLDLSLN--DVS-NSVYYWLFNSSSSLVYLDLSSNK-LQGPIPDSAFPNPTSLSYLDLS  301 (820)
Q Consensus       228 ~~~-~~~~~~~l~~~~~-~L~~L~Ls~n--~l~-~~~~~~~~~~~~~L~~L~Ls~n~-l~g~ip~~~l~~l~~L~~L~Ls  301 (820)
                      ++. ++   ..+..+ + +|++|++++|  .++ +.++..+.... +|++|++++|. +++..+.. +..+++|++|+++
T Consensus       182 ~~~~~~---~~~~~l-~~~L~~L~l~~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~-l~~l~~L~~L~l~  255 (336)
T 2ast_B          182 TEKHVQ---VAVAHV-SETITQLNLSGYRKNLQKSDLSTLVRRCP-NLVHLDLSDSVMLKNDCFQE-FFQLNYLQHLSLS  255 (336)
T ss_dssp             CHHHHH---HHHHHS-CTTCCEEECCSCGGGSCHHHHHHHHHHCT-TCSEEECTTCTTCCGGGGGG-GGGCTTCCEEECT
T ss_pred             ChHHHH---HHHHhc-ccCCCEEEeCCCcccCCHHHHHHHHhhCC-CCCEEeCCCCCcCCHHHHHH-HhCCCCCCEeeCC
Confidence            754 33   344555 7 8999999999  566 45565555554 89999999998 66555655 7888999999999


Q ss_pred             CCC-CC-CcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCC
Q 045139          302 NNQ-LV-SVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPD  363 (820)
Q Consensus       302 ~n~-l~-~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~  363 (820)
                      +|. +. .....+.++++|++|++++| ++...   +..+..    .++.|+++.|++++..|.
T Consensus       256 ~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~---~~~l~~----~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          256 RCYDIIPETLLELGEIPTLKTLQVFGI-VPDGT---LQLLKE----ALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             TCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTC---HHHHHH----HSTTSEESCCCSCCTTCS
T ss_pred             CCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHH---HHHHHh----hCcceEEecccCccccCC
Confidence            885 33 11235778888999999888 44432   333221    356666788888877776

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=4.2e-23  Score=223.62  Aligned_cols=138  Identities=22%  Similarity=0.236  Sum_probs=71.2

Q ss_pred             cccEEEccCCccccccCcccc----cC-CCCcEEEcCCCeeeecCCCCccc-----ccCCcEEeccCCcccccC----Cc
Q 045139          572 HFRYLDLSDNLLSGELPNCSK----NW-QKLTVLNLANNKFSGKIPDSMDF-----NCMMLSLHLRNNSFIGEL----PS  637 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~----~l-~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~~~----p~  637 (820)
                      +|++|++++|.+++..+..+.    .+ ++|++|++++|++++..+..+..     .++|++|++++|.+++..    +.
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            566666666666655444332    23 56666666666665544433322     245666666666665432    22


Q ss_pred             chhcCC-CCCEEECCCCcCccccCcchhc---CC-CCccEEEcCccccccc----CCcccCC-CCCCCEEeCcCCCCccc
Q 045139          638 SVKSFT-QLTVLDLGHNKISGIIPAWIGD---SL-PDLVVLSLRSNNFHGR----VPVQVCH-LQRIQVLDLSQNNISGT  707 (820)
Q Consensus       638 ~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~---~l-~~L~~L~L~~N~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~~~  707 (820)
                      .+..++ +|++|+|++|++++..+..+..   .. ++|++|+|++|++++.    ++..+.. .++|+.|||++|++++.
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence            333343 5666666666665544433221   22 3566666666665541    2333333 23566666666665544


Q ss_pred             cc
Q 045139          708 VP  709 (820)
Q Consensus       708 ~p  709 (820)
                      .+
T Consensus       241 ~~  242 (362)
T 3goz_A          241 SL  242 (362)
T ss_dssp             CH
T ss_pred             HH
Confidence            33

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=1.2e-22  Score=219.94  Aligned_cols=265  Identities=20%  Similarity=0.154  Sum_probs=181.2

Q ss_pred             EEccCCcccccccccccCCCCCCEEecCCCcCccccCH---HHhhcCC-CCCEEeCcCCccccccCCCCcCccccceeec
Q 045139          383 LYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITE---AHLSNLS-RLTYLDLSHNSLILNFGSGWVPSFELNIIRL  458 (820)
Q Consensus       383 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  458 (820)
                      +.++.|.++|.+|..+...++|++|++++|.+++..+.   ..+..++ +|++|++++|.+....               
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~---------------   67 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKN---------------   67 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSC---------------
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHH---------------
Confidence            45677788888787777777788888888888764331   3577777 7888888888775422               


Q ss_pred             ccccCCCCCchhhhcC-----CCccEEecCCCCccCCCCchhhcc----CCCcEEEEcCCCcCCCCCCcccccc-cCCCC
Q 045139          459 GACKQGPQFPKWLQTQ-----NKFSELDVSAAEISDTVPNWFWDL----SPNLYYLNLSHNHFTGMLPDLSQKF-TAYPP  528 (820)
Q Consensus       459 ~~~~~~~~~~~~l~~~-----~~L~~L~l~~n~i~~~~p~~~~~~----~~~L~~L~ls~n~l~~~~p~~~~~~-~~l~~  528 (820)
                               +..+...     ++|++|++++|.+++..+..+...    .++|++|++++|++++..+..+... ..+  
T Consensus        68 ---------~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~--  136 (362)
T 3goz_A           68 ---------SDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL--  136 (362)
T ss_dssp             ---------HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTS--
T ss_pred             ---------HHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhC--
Confidence                     2233332     777778888887776666544332    2578888888888766544322211 000  


Q ss_pred             ceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccc----cCcccccCC-CCcEEEcC
Q 045139          529 EIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGE----LPNCSKNWQ-KLTVLNLA  603 (820)
Q Consensus       529 ~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~p~~~~~l~-~L~~L~Ls  603 (820)
                                                               ..+|++|++++|.+++.    ++..+..++ +|++|+++
T Consensus       137 -----------------------------------------~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls  175 (362)
T 3goz_A          137 -----------------------------------------PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR  175 (362)
T ss_dssp             -----------------------------------------CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred             -----------------------------------------CCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeec
Confidence                                                     00677777777777743    334445555 88888888


Q ss_pred             CCeeeecCCCCccc----c-cCCcEEeccCCccccc----CCcchhc-CCCCCEEECCCCcCccccCcc---hhcCCCCc
Q 045139          604 NNKFSGKIPDSMDF----N-CMMLSLHLRNNSFIGE----LPSSVKS-FTQLTVLDLGHNKISGIIPAW---IGDSLPDL  670 (820)
Q Consensus       604 ~N~l~~~~p~~l~~----l-~~L~~L~Ls~N~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~---l~~~l~~L  670 (820)
                      +|++++..+..++.    + ++|++|+|++|.+++.    ++..+.. .++|++|+|++|++++..+..   +...+++|
T Consensus       176 ~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L  255 (362)
T 3goz_A          176 GNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL  255 (362)
T ss_dssp             TSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTC
T ss_pred             CCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCc
Confidence            88888766654443    3 5899999999988863    4555655 458999999999998654422   22367899


Q ss_pred             cEEEcCcccccc-------cCCcccCCCCCCCEEeCcCCCCccccchhccc
Q 045139          671 VVLSLRSNNFHG-------RVPVQVCHLQRIQVLDLSQNNISGTVPQCLNN  714 (820)
Q Consensus       671 ~~L~L~~N~l~~-------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  714 (820)
                      ++|++++|.+.+       .++..+..+++|+.||+++|++.+..|..+.+
T Consensus       256 ~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~  306 (362)
T 3goz_A          256 QTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISN  306 (362)
T ss_dssp             SEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHH
T ss_pred             cEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHH
Confidence            999999998543       23456788999999999999998776655543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=8.4e-23  Score=223.55  Aligned_cols=161  Identities=20%  Similarity=0.243  Sum_probs=133.3

Q ss_pred             cccEEEccCCccccccCcc----cccC---------CCCcEEEcCCCeee-ecCC---CCcccccCCcEEeccCCcccc-
Q 045139          572 HFRYLDLSDNLLSGELPNC----SKNW---------QKLTVLNLANNKFS-GKIP---DSMDFNCMMLSLHLRNNSFIG-  633 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~----~~~l---------~~L~~L~Ls~N~l~-~~~p---~~l~~l~~L~~L~Ls~N~l~~-  633 (820)
                      +|++|++++|.+++..+..    +..+         ++|++|++++|+++ +.+|   ..+..+++|++|++++|+++. 
T Consensus       123 ~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~  202 (386)
T 2ca6_A          123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE  202 (386)
T ss_dssp             TCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH
T ss_pred             CCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHh
Confidence            7899999999997554443    4444         89999999999997 3445   467789999999999999983 


Q ss_pred             ----cCCcchhcCCCCCEEECCCCcCc----cccCcchhcCCCCccEEEcCccccccc----CCccc--CCCCCCCEEeC
Q 045139          634 ----ELPSSVKSFTQLTVLDLGHNKIS----GIIPAWIGDSLPDLVVLSLRSNNFHGR----VPVQV--CHLQRIQVLDL  699 (820)
Q Consensus       634 ----~~p~~l~~l~~L~~L~Ls~N~l~----~~~p~~l~~~l~~L~~L~L~~N~l~~~----~p~~l--~~l~~L~~L~L  699 (820)
                          ..|..+..+++|++|+|++|.++    +.+|..+. .+++|+.|+|++|++++.    +|..+  +.+++|+.|+|
T Consensus       203 g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L  281 (386)
T 2ca6_A          203 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK-SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRL  281 (386)
T ss_dssp             HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG-GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEEC
T ss_pred             HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc-cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEEC
Confidence                34558899999999999999996    67888887 799999999999999875    56666  44999999999


Q ss_pred             cCCCCcc----ccchhc-cccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC
Q 045139          700 SQNNISG----TVPQCL-NNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP  774 (820)
Q Consensus       700 s~N~l~~----~~p~~l-~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip  774 (820)
                      ++|++++    .+|..+ .+++.|                                         +.|++++|++++..|
T Consensus       282 ~~n~i~~~g~~~l~~~l~~~l~~L-----------------------------------------~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          282 QYNEIELDAVRTLKTVIDEKMPDL-----------------------------------------LFLELNGNRFSEEDD  320 (386)
T ss_dssp             CSSCCBHHHHHHHHHHHHHHCTTC-----------------------------------------CEEECTTSBSCTTSH
T ss_pred             cCCcCCHHHHHHHHHHHHhcCCCc-----------------------------------------eEEEccCCcCCcchh
Confidence            9999997    477766 556666                                         899999999997663

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=1.5e-22  Score=217.16  Aligned_cols=201  Identities=19%  Similarity=0.209  Sum_probs=107.2

Q ss_pred             CccEEecCCCCccCCCCchhhcc-CCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEecc
Q 045139          476 KFSELDVSAAEISDTVPNWFWDL-SPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILF  554 (820)
Q Consensus       476 ~L~~L~l~~n~i~~~~p~~~~~~-~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~  554 (820)
                      .++.++++++.+..   ..+... .++++.+++++|.+.+..+.. ..++.+ +.+++++|.+++.              
T Consensus        48 ~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~~-~~~~~L-~~L~L~~~~l~~~--------------  108 (336)
T 2ast_B           48 LWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRV-QHMDLSNSVIEVS--------------  108 (336)
T ss_dssp             TSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCSC-CCCBCC-CEEECTTCEECHH--------------
T ss_pred             hheeeccccccCCH---HHHHhhhhccceEEEcCCccccccchhh-ccCCCC-CEEEccCCCcCHH--------------
Confidence            46677777776652   222221 146777777777766655542 223333 3333333333221              


Q ss_pred             CcccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCC-eeee-cCCCCcccccCCcEEeccCC-cc
Q 045139          555 KNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANN-KFSG-KIPDSMDFNCMMLSLHLRNN-SF  631 (820)
Q Consensus       555 ~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~-~~p~~l~~l~~L~~L~Ls~N-~l  631 (820)
                            .++...... .+|++|++++|.+++..+..+..+++|++|++++| .+++ .++..+..+++|++|++++| .+
T Consensus       109 ------~~~~~~~~~-~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l  181 (336)
T 2ast_B          109 ------TLHGILSQC-SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF  181 (336)
T ss_dssp             ------HHHHHHTTB-CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred             ------HHHHHHhhC-CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc
Confidence                  011111111 15666666666666555556666666666666666 4544 24444555666666666666 55


Q ss_pred             ccc-CCcchhcCC-CCCEEECCCC--cCc-cccCcchhcCCCCccEEEcCccc-ccccCCcccCCCCCCCEEeCcCCC
Q 045139          632 IGE-LPSSVKSFT-QLTVLDLGHN--KIS-GIIPAWIGDSLPDLVVLSLRSNN-FHGRVPVQVCHLQRIQVLDLSQNN  703 (820)
Q Consensus       632 ~~~-~p~~l~~l~-~L~~L~Ls~N--~l~-~~~p~~l~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~Ls~N~  703 (820)
                      ++. ++..+..++ +|++|++++|  .++ +.+|..+. .+++|+.|++++|. +++..+..+..+++|+.|++++|.
T Consensus       182 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR-RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH-HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh-hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence            543 455556666 6666666666  333 34444444 46666666666666 555555556666666666666664

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=1.1e-21  Score=207.49  Aligned_cols=177  Identities=21%  Similarity=0.210  Sum_probs=148.8

Q ss_pred             cccEEEccCCccccccC----cccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCccccc--C--CcchhcCC
Q 045139          572 HFRYLDLSDNLLSGELP----NCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGE--L--PSSVKSFT  643 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~--p~~l~~l~  643 (820)
                      +|++|++++|.+++..+    ..+..+++|++|++++|++.+..|..++.+++|++|++++|++.+.  +  +..+..++
T Consensus       118 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~  197 (310)
T 4glp_A          118 ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP  197 (310)
T ss_dssp             CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC
T ss_pred             CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC
Confidence            89999999999987655    3456789999999999999988889999999999999999998753  2  23457899


Q ss_pred             CCCEEECCCCcCccccCc---chhcCCCCccEEEcCcccccccCCcccCCC---CCCCEEeCcCCCCccccchhcccccc
Q 045139          644 QLTVLDLGHNKISGIIPA---WIGDSLPDLVVLSLRSNNFHGRVPVQVCHL---QRIQVLDLSQNNISGTVPQCLNNLTA  717 (820)
Q Consensus       644 ~L~~L~Ls~N~l~~~~p~---~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~  717 (820)
                      +|++|++++|+++ .+|.   ++...+++|++|+|++|++++..|..+..+   ++|++|++++|+++ .+|..+.  +.
T Consensus       198 ~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~  273 (310)
T 4glp_A          198 AIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AK  273 (310)
T ss_dssp             CCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SC
T ss_pred             CCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CC
Confidence            9999999999997 3343   232368999999999999998888888877   69999999999999 6777653  44


Q ss_pred             ccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCcccc
Q 045139          718 MTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTG  794 (820)
Q Consensus       718 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~  794 (820)
                      |                                         +.|||++|+++ .+|.+..+++|+.|+|++|+++.
T Consensus       274 L-----------------------------------------~~L~Ls~N~l~-~~~~~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          274 L-----------------------------------------RVLDLSSNRLN-RAPQPDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             C-----------------------------------------SCEECCSCCCC-SCCCTTSCCCCSCEECSSTTTSC
T ss_pred             C-----------------------------------------CEEECCCCcCC-CCchhhhCCCccEEECcCCCCCC
Confidence            4                                         88999999999 45767888999999999999974

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=3.4e-21  Score=195.67  Aligned_cols=187  Identities=15%  Similarity=0.199  Sum_probs=163.3

Q ss_pred             cccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCc-ccccCCcchhcCCCCCEEECCC-CcCccccC
Q 045139          583 LSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNS-FIGELPSSVKSFTQLTVLDLGH-NKISGIIP  660 (820)
Q Consensus       583 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p  660 (820)
                      ++ .+|. +.  ++|++|++++|++++..+..|+.+++|++|++++|+ +++..+..|.++++|++|++++ |++++..+
T Consensus        23 l~-~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           23 IQ-RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             CS-SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred             cc-ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence            44 5666 43  489999999999998888899999999999999997 8877777999999999999999 99996555


Q ss_pred             cchhcCCCCccEEEcCcccccccCCcccCCCCCCC---EEeCcCC-CCccccchhccccccccccccCCcccccCCcccc
Q 045139          661 AWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQ---VLDLSQN-NISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDY  736 (820)
Q Consensus       661 ~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~---~L~Ls~N-~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~  736 (820)
                      ..+. .+++|++|++++|++++ +|. +..+++|+   .|++++| ++++..+..|.+++.|                  
T Consensus        99 ~~f~-~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L------------------  157 (239)
T 2xwt_C           99 DALK-ELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE------------------  157 (239)
T ss_dssp             TSEE-CCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS------------------
T ss_pred             HHhC-CCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc------------------
Confidence            6666 79999999999999996 776 88999998   9999999 9987666678888777                  


Q ss_pred             ccCceeEEeeccccccccccCceE-EEECCCCcCeecCC-CcccccCCCEEeCCCCc-cccCCcccccCC-CCCCeEeCC
Q 045139          737 YNDHALLVWKRKDSEYRNTLGLVK-SIDLSSNRLYGEIP-EVTSLVGLISLNLSKNS-LTGPIPSKIGGL-TLLNSLDLS  812 (820)
Q Consensus       737 ~~~~~~~~~~~~~~~~~~~l~~L~-~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~l-~~L~~LdLs  812 (820)
                                             + .|++++|+++ .+| .....++|+.|++++|+ +++..+..|.++ ++|++||++
T Consensus       158 -----------------------~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~  213 (239)
T 2xwt_C          158 -----------------------TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS  213 (239)
T ss_dssp             -----------------------EEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECT
T ss_pred             -----------------------eeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECC
Confidence                                   8 9999999999 677 55555899999999995 997778889999 999999999


Q ss_pred             CCcCcc
Q 045139          813 KNMLMR  818 (820)
Q Consensus       813 ~N~l~g  818 (820)
                      +|++++
T Consensus       214 ~N~l~~  219 (239)
T 2xwt_C          214 QTSVTA  219 (239)
T ss_dssp             TCCCCC
T ss_pred             CCcccc
Confidence            999975

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=3.3e-20  Score=209.86  Aligned_cols=193  Identities=23%  Similarity=0.314  Sum_probs=115.2

Q ss_pred             cceEEeccCcccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEec
Q 045139          547 TVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHL  626 (820)
Q Consensus       547 ~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  626 (820)
                      +++.+++++|.+++..+...    .+|++|++++|+++ .+|   ..+++|++|++++|++++ +|. +..  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~----~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP----PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC----TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCCccCHhHc----CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            46666666666665222121    15667777777666 455   345666677777776665 555 443  6667777


Q ss_pred             cCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCcc
Q 045139          627 RNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISG  706 (820)
Q Consensus       627 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  706 (820)
                      ++|++++ +|.   .+++|++|++++|++++ +|.    .+++|++|+|++|++++ +|. +.  ++|+.|+|++|+|+ 
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-  193 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-  193 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence            7776665 444   45666777777776663 554    25666677777776664 555 44  66677777777666 


Q ss_pred             ccchhccccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEE
Q 045139          707 TVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISL  785 (820)
Q Consensus       707 ~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L  785 (820)
                      .+|. +..  .|                                  ....+.++.|+|++|+|+ .|| .+..+++|+.|
T Consensus       194 ~lp~-~~~--~L----------------------------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L  235 (571)
T 3cvr_A          194 SLPA-VPV--RN----------------------------------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTI  235 (571)
T ss_dssp             SCCC-CC--------------------------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEE
T ss_pred             chhh-HHH--hh----------------------------------hcccccceEEecCCCcce-ecCHHHhcCCCCCEE
Confidence            4554 332  11                                  001122366777777776 566 66667777777


Q ss_pred             eCCCCccccCCcccccCC
Q 045139          786 NLSKNSLTGPIPSKIGGL  803 (820)
Q Consensus       786 ~Ls~N~l~~~ip~~l~~l  803 (820)
                      +|++|.+++.+|..|..+
T Consensus       236 ~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          236 ILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             ECCSSSCCHHHHHHHHHH
T ss_pred             EeeCCcCCCcCHHHHHHh
Confidence            777777777777666554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=3.1e-20  Score=184.11  Aligned_cols=182  Identities=19%  Similarity=0.180  Sum_probs=149.3

Q ss_pred             ccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCC
Q 045139          573 FRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGH  652 (820)
Q Consensus       573 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  652 (820)
                      -+.++.+++.++ .+|..+  .++|++|++++|++++..+..++.+++|++|++++|++++..+..+..+++|++|++++
T Consensus         9 ~~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A            9 GTTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TTEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            367788888887 455544  46899999999999877777788999999999999999977777788999999999999


Q ss_pred             CcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCC
Q 045139          653 NKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPL  732 (820)
Q Consensus       653 N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~  732 (820)
                      |++++..+..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+.++++|              
T Consensus        86 n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L--------------  150 (208)
T 2o6s_A           86 NQLQSLPNGVFD-KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL--------------  150 (208)
T ss_dssp             SCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC--------------
T ss_pred             CcCCccCHhHhc-CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc--------------
Confidence            999855555555 78999999999999997777778889999999999999986666667777766              


Q ss_pred             ccccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCccccCCcccccCCCC
Q 045139          733 RTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTL  805 (820)
Q Consensus       733 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~  805 (820)
                                                 +.|++++|.+.+.      ++.|+.|+++.|+++|.+|+.++.++.
T Consensus       151 ---------------------------~~L~l~~N~~~~~------~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          151 ---------------------------QYIWLHDNPWDCT------CPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             ---------------------------CEEECCSCCBCCC------TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             ---------------------------cEEEecCCCeecC------CCCHHHHHHHHHhCCceeeccCccccC
Confidence                                       8899999988754      457888899999999999988887764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=3.2e-20  Score=210.04  Aligned_cols=198  Identities=20%  Similarity=0.260  Sum_probs=156.2

Q ss_pred             ccCce-EecCCCCcEEEEEcCCCCCCCCcccccccccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCC
Q 045139           77 KWRGV-SCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGR  155 (820)
Q Consensus        77 ~w~gv-~c~~~~~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~  155 (820)
                      .|.|+ .|.  .++++.|++++   +.+++ +|..+.  ++|++|+|++|.++.  +|   +.+++|++|+|++|.+++ 
T Consensus        49 ~~~~l~~C~--~~~L~~L~Ls~---n~L~~-lp~~l~--~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~~-  114 (571)
T 3cvr_A           49 AVSLLKECL--INQFSELQLNR---LNLSS-LPDNLP--PQITVLEITQNALIS--LP---ELPASLEYLDACDNRLST-  114 (571)
T ss_dssp             HHHHHHHHH--HTTCSEEECCS---SCCSC-CCSCCC--TTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC-
T ss_pred             hhhhccccc--cCCccEEEeCC---CCCCc-cCHhHc--CCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCCCC-
Confidence            69998 675  35789999998   77876 787664  789999999999974  77   457899999999999996 


Q ss_pred             CCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCcccc
Q 045139          156 VPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSS  235 (820)
Q Consensus       156 ~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~  235 (820)
                      +|. +..  +|++|++++|                         .+++.   |.   .+++|++|++++|.+++ +|   
T Consensus       115 ip~-l~~--~L~~L~Ls~N-------------------------~l~~l---p~---~l~~L~~L~Ls~N~l~~-lp---  156 (571)
T 3cvr_A          115 LPE-LPA--SLKHLDVDNN-------------------------QLTML---PE---LPALLEYINADNNQLTM-LP---  156 (571)
T ss_dssp             CCC-CCT--TCCEEECCSS-------------------------CCSCC---CC---CCTTCCEEECCSSCCSC-CC---
T ss_pred             cch-hhc--CCCEEECCCC-------------------------cCCCC---CC---cCccccEEeCCCCccCc-CC---
Confidence            776 655  7888888877                         33332   22   46777788888887776 33   


Q ss_pred             ccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCC-------CEEECCCCCCCCc
Q 045139          236 VSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSL-------SYLDLSNNQLVSV  308 (820)
Q Consensus       236 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L-------~~L~Ls~n~l~~i  308 (820)
                      .   .+ ++|++|++++|.+++ +|. +.   ++|++|++++|.++ .+|.  +..  +|       ++|+|++|+|+.+
T Consensus       157 ~---~l-~~L~~L~Ls~N~L~~-lp~-l~---~~L~~L~Ls~N~L~-~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~l  222 (571)
T 3cvr_A          157 E---LP-TSLEVLSVRNNQLTF-LPE-LP---ESLEALDVSTNLLE-SLPA--VPV--RNHHSEETEIFFRCRENRITHI  222 (571)
T ss_dssp             C---CC-TTCCEEECCSSCCSC-CCC-CC---TTCCEEECCSSCCS-SCCC--CC----------CCEEEECCSSCCCCC
T ss_pred             C---cC-CCcCEEECCCCCCCC-cch-hh---CCCCEEECcCCCCC-chhh--HHH--hhhcccccceEEecCCCcceec
Confidence            1   22 788888888888886 666 33   48999999999998 7887  433  66       9999999999999


Q ss_pred             chhhhccCCCcEEEcCCCCCCCcchhhhhhcc
Q 045139          309 PKSFRNLCRLRALYQDSNNLTDLLPNLFLKLS  340 (820)
Q Consensus       309 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~  340 (820)
                      |..+..+++|++|++++|.+++.+|..+..+.
T Consensus       223 p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          223 PENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             CGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             CHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            99988899999999999999999999888765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=1.4e-19  Score=190.93  Aligned_cols=195  Identities=23%  Similarity=0.313  Sum_probs=122.4

Q ss_pred             ccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCC
Q 045139          111 LIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSF  190 (820)
Q Consensus       111 l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~  190 (820)
                      +..+++|++|++++|.+..  +| .+..+++|++|++++|.+++ ++. ++.+++|++|++++|.   ...++.+..   
T Consensus        37 ~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~---l~~~~~~~~---  105 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNP---LKNVSAIAG---  105 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCC---CSCCGGGTT---
T ss_pred             HHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCc---CCCchhhcC---
Confidence            4567788888888887765  55 57778888888888888874 343 7778888888887771   111223444   


Q ss_pred             CCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCC
Q 045139          191 LEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSL  270 (820)
Q Consensus       191 L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L  270 (820)
                                             +++|++|++++|.+++..     .+..+ ++|++|++++|.+++..+  +.... +|
T Consensus       106 -----------------------l~~L~~L~l~~n~l~~~~-----~l~~l-~~L~~L~l~~n~l~~~~~--l~~l~-~L  153 (308)
T 1h6u_A          106 -----------------------LQSIKTLDLTSTQITDVT-----PLAGL-SNLQVLYLDLNQITNISP--LAGLT-NL  153 (308)
T ss_dssp             -----------------------CTTCCEEECTTSCCCCCG-----GGTTC-TTCCEEECCSSCCCCCGG--GGGCT-TC
T ss_pred             -----------------------CCCCCEEECCCCCCCCch-----hhcCC-CCCCEEECCCCccCcCcc--ccCCC-Cc
Confidence                                   444444444444444321     13333 555555555555543322  33333 67


Q ss_pred             cEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEE
Q 045139          271 VYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEIL  350 (820)
Q Consensus       271 ~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L  350 (820)
                      ++|++++|.++ .++.  +..+++|++|++++|+++.++. +..+++|++|++++|++++..+  +..++     +|+.|
T Consensus       154 ~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~-----~L~~L  222 (308)
T 1h6u_A          154 QYLSIGNAQVS-DLTP--LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTS-----NLFIV  222 (308)
T ss_dssp             CEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG--GTTCT-----TCCEE
T ss_pred             cEEEccCCcCC-CChh--hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc--ccCCC-----CCCEE
Confidence            77777777666 3443  6667777777777777776655 6777777777777777776553  55565     77778


Q ss_pred             EcCCCCCcc
Q 045139          351 QLNSNMLRG  359 (820)
Q Consensus       351 ~L~~n~l~~  359 (820)
                      ++++|++++
T Consensus       223 ~l~~N~i~~  231 (308)
T 1h6u_A          223 TLTNQTITN  231 (308)
T ss_dssp             EEEEEEEEC
T ss_pred             EccCCeeec
Confidence            887777764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=1.1e-19  Score=180.03  Aligned_cols=175  Identities=22%  Similarity=0.196  Sum_probs=147.8

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      ++++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            78999999999997777778999999999999999997777778999999999999999998777778999999999999


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP  731 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~  731 (820)
                      +|++++..+..+. .+++|++|++++|++++..+..+..+++|+.|++++|++.+..|       .+             
T Consensus       109 ~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------~l-------------  167 (208)
T 2o6s_A          109 TNQLQSLPDGVFD-KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GI-------------  167 (208)
T ss_dssp             SSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT-------TT-------------
T ss_pred             CCcCcccCHhHhc-cCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC-------CH-------------
Confidence            9999965555555 79999999999999997777778999999999999998875433       33             


Q ss_pred             CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCccc
Q 045139          732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSK  799 (820)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~  799 (820)
                                                  +.|+++.|+++|.+| .++.++.    ++..+...|..+..
T Consensus       168 ----------------------------~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~~~~  204 (208)
T 2o6s_A          168 ----------------------------RYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKPVRS  204 (208)
T ss_dssp             ----------------------------HHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCBGGG
T ss_pred             ----------------------------HHHHHHHHhCCceeeccCccccC----CccccccCCCccee
Confidence                                        667888999999999 8887765    56666665555444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=2.8e-19  Score=178.49  Aligned_cols=133  Identities=20%  Similarity=0.220  Sum_probs=69.4

Q ss_pred             CCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccC
Q 045139          645 LTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSS  724 (820)
Q Consensus       645 L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~  724 (820)
                      +++|++++|++++..|......+++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|.+++.|      
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------  107 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL------  107 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC------
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC------
Confidence            34455555555433332211245555555555555554444455555555555555555554444445544444      


Q ss_pred             CcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCC
Q 045139          725 NAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGL  803 (820)
Q Consensus       725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l  803 (820)
                                                         +.|+|++|++++.+| .+..+++|+.|+|++|++++..|..|..+
T Consensus       108 -----------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  152 (220)
T 2v70_A          108 -----------------------------------KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL  152 (220)
T ss_dssp             -----------------------------------CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTC
T ss_pred             -----------------------------------CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCC
Confidence                                               555555555554445 55555555555555555555555555555


Q ss_pred             CCCCeEeCCCCcCcc
Q 045139          804 TLLNSLDLSKNMLMR  818 (820)
Q Consensus       804 ~~L~~LdLs~N~l~g  818 (820)
                      ++|++||+++|+++|
T Consensus       153 ~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          153 HSLSTLNLLANPFNC  167 (220)
T ss_dssp             TTCCEEECCSCCEEC
T ss_pred             CCCCEEEecCcCCcC
Confidence            555555555555554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=4.7e-19  Score=190.71  Aligned_cols=239  Identities=23%  Similarity=0.262  Sum_probs=142.1

Q ss_pred             cccCceEecCCCCcEEEEEcCCCCCCCCcccccccccCCCCCCEEECcCCCCCCcccCc-cccCCCCCCEEeccCCCCCC
Q 045139           76 CKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPA-FIGSLKNIRHLDLSNAGFTG  154 (820)
Q Consensus        76 c~w~gv~c~~~~~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~-~i~~l~~L~~L~Ls~n~l~~  154 (820)
                      |.|..|.|++               .+++ .+|..+  .+++++|+|++|+++.  +|+ .|+++++|++|+|++|.+.+
T Consensus         9 C~~~~v~C~~---------------~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~   68 (350)
T 4ay9_X            9 CSNRVFLCQE---------------SKVT-EIPSDL--PRNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLE   68 (350)
T ss_dssp             EETTEEEEES---------------TTCC-SCCTTC--CTTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCC
T ss_pred             eeCCEEEecC---------------CCCC-ccCcCc--CCCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCC
Confidence            7788888863               2333 456555  3689999999999976  654 68999999999999999877


Q ss_pred             CCCc-cCCCCCCCcEEe-CCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCc
Q 045139          155 RVPY-QLGNLTSLQYLD-LSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIA  232 (820)
Q Consensus       155 ~~p~-~l~~l~~L~~L~-Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~  232 (820)
                      .+|. .|.++++++++. ++.| .+....+..+..                          +++|++|++++|.+....+
T Consensus        69 ~i~~~~f~~L~~l~~~l~~~~N-~l~~l~~~~f~~--------------------------l~~L~~L~l~~n~l~~~~~  121 (350)
T 4ay9_X           69 VIEADVFSNLPKLHEIRIEKAN-NLLYINPEAFQN--------------------------LPNLQYLLISNTGIKHLPD  121 (350)
T ss_dssp             EECTTSBCSCTTCCEEEEEEET-TCCEECTTSBCC--------------------------CTTCCEEEEEEECCSSCCC
T ss_pred             ccChhHhhcchhhhhhhcccCC-cccccCchhhhh--------------------------ccccccccccccccccCCc
Confidence            6664 578888877644 4444 222222333444                          4445555555554444433


Q ss_pred             cccccccCCcCCccEEECcCC-CCCCchhh-hhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECC-CCCCCCcc
Q 045139          233 SSSVSFSNSSRSLAHLDLSLN-DVSNSVYY-WLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLS-NNQLVSVP  309 (820)
Q Consensus       233 ~~~~~l~~~~~~L~~L~Ls~n-~l~~~~~~-~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls-~n~l~~ip  309 (820)
                         ..+... .++..+++.++ .+. .++. .+......++.|++++|+++ .||..+| ...+|++++++ +|.++.+|
T Consensus       122 ---~~~~~~-~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f-~~~~L~~l~l~~~n~l~~i~  194 (350)
T 4ay9_X          122 ---VHKIHS-LQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQ-EIHNSAF-NGTQLDELNLSDNNNLEELP  194 (350)
T ss_dssp             ---CTTCCB-SSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCC-EECTTSS-TTEEEEEEECTTCTTCCCCC
T ss_pred             ---hhhccc-chhhhhhhccccccc-cccccchhhcchhhhhhcccccccc-CCChhhc-cccchhHHhhccCCcccCCC
Confidence               222222 44555555443 332 3332 22333335666666666666 5555533 34556666665 35566665


Q ss_pred             h-hhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCCCcCcCCCcEEecC
Q 045139          310 K-SFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLY  376 (820)
Q Consensus       310 ~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~~~l~~L~~L~l~  376 (820)
                      . .|.++++|++|++++|+++...+..|.        +|+.|.+.++.--..+|.+..+++|+.+++.
T Consensus       195 ~~~f~~l~~L~~LdLs~N~l~~lp~~~~~--------~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~  254 (350)
T 4ay9_X          195 NDVFHGASGPVILDISRTRIHSLPSYGLE--------NLKKLRARSTYNLKKLPTLEKLVALMEASLT  254 (350)
T ss_dssp             TTTTTTEECCSEEECTTSCCCCCCSSSCT--------TCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred             HHHhccCcccchhhcCCCCcCccChhhhc--------cchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence            4 356666666666666666665444433        4555555555444567777778888877654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=4.8e-19  Score=185.06  Aligned_cols=124  Identities=27%  Similarity=0.294  Sum_probs=66.2

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      +++.|++++|.++.. + .+..+++|++|++++|++++..+  ++.+++|++|++++|.+++ + ..+..+++|++|+++
T Consensus        47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~  120 (291)
T 1h6t_A           47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLE  120 (291)
T ss_dssp             TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECT
T ss_pred             cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECC
Confidence            455566655555532 2 25555556666666665554332  5555555566665555553 2 235555555556665


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCcc
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISG  706 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  706 (820)
                      +|++++ ++ .+. .+++|+.|++++|++++.  ..+..+++|+.|++++|++++
T Consensus       121 ~n~i~~-~~-~l~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~  170 (291)
T 1h6t_A          121 HNGISD-IN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD  170 (291)
T ss_dssp             TSCCCC-CG-GGG-GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred             CCcCCC-Ch-hhc-CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence            555553 22 233 455555555555555543  345555555555555555554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=1e-18  Score=188.12  Aligned_cols=241  Identities=21%  Similarity=0.189  Sum_probs=182.0

Q ss_pred             CEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCeeeCC
Q 045139          118 NYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLN  197 (820)
Q Consensus       118 ~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~  197 (820)
                      ++++.++++++.  +|..+  .+++++|+|++|+|+...+.+|+++++|++|+|++|.                      
T Consensus        12 ~~v~C~~~~Lt~--iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~----------------------   65 (350)
T 4ay9_X           12 RVFLCQESKVTE--IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND----------------------   65 (350)
T ss_dssp             TEEEEESTTCCS--CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCT----------------------
T ss_pred             CEEEecCCCCCc--cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCC----------------------
Confidence            567888888875  88776  4689999999999994444578999999999999882                      


Q ss_pred             CccCCCCccH-HHHhCCCCCCCE-EEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEEEc
Q 045139          198 QVNLGEATDW-LQVVSQLPSLTE-LQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDL  275 (820)
Q Consensus       198 ~n~l~~~~~~-~~~l~~l~~L~~-L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L  275 (820)
                         +.+  .+ +..|.+++++++ +.+++|+++...|   ..+..+ ++|++|++++|.+++..+..+.... ++..|++
T Consensus        66 ---i~~--~i~~~~f~~L~~l~~~l~~~~N~l~~l~~---~~f~~l-~~L~~L~l~~n~l~~~~~~~~~~~~-~l~~l~l  135 (350)
T 4ay9_X           66 ---VLE--VIEADVFSNLPKLHEIRIEKANNLLYINP---EAFQNL-PNLQYLLISNTGIKHLPDVHKIHSL-QKVLLDI  135 (350)
T ss_dssp             ---TCC--EECTTSBCSCTTCCEEEEEEETTCCEECT---TSBCCC-TTCCEEEEEEECCSSCCCCTTCCBS-SCEEEEE
T ss_pred             ---CCC--ccChhHhhcchhhhhhhcccCCcccccCc---hhhhhc-cccccccccccccccCCchhhcccc-hhhhhhh
Confidence               111  11 134566777665 5566788888777   566677 9999999999999876555555555 8899999


Q ss_pred             cCC-cccCCCCCCCCCCCC-CCCEEECCCCCCCCcchhhhccCCCcEEEcCC-CCCCCcchhhhhhcccCCcCCccEEEc
Q 045139          276 SSN-KLQGPIPDSAFPNPT-SLSYLDLSNNQLVSVPKSFRNLCRLRALYQDS-NNLTDLLPNLFLKLSNCSRDTLEILQL  352 (820)
Q Consensus       276 s~n-~l~g~ip~~~l~~l~-~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~~~~~~L~~L~L  352 (820)
                      .++ .+. .++...|..+. .+++|++++|+++.+|.......+|+++++.+ |.++.+.+..|..++     +|+.|++
T Consensus       136 ~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~-----~L~~LdL  209 (350)
T 4ay9_X          136 QDNINIH-TIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS-----GPVILDI  209 (350)
T ss_dssp             ESCTTCC-EECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEE-----CCSEEEC
T ss_pred             ccccccc-cccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCc-----ccchhhc
Confidence            764 565 78877687775 68999999999999998877778999999975 777777778899998     9999999


Q ss_pred             CCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCc
Q 045139          353 NSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNS  413 (820)
Q Consensus       353 ~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  413 (820)
                      ++|+++...+.  .+.+|+.|.+.+         .+.+. .+| .+..+++|+.+++.++.
T Consensus       210 s~N~l~~lp~~--~~~~L~~L~~l~---------~~~l~-~lP-~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          210 SRTRIHSLPSY--GLENLKKLRARS---------TYNLK-KLP-TLEKLVALMEASLTYPS  257 (350)
T ss_dssp             TTSCCCCCCSS--SCTTCCEEECTT---------CTTCC-CCC-CTTTCCSCCEEECSCHH
T ss_pred             CCCCcCccChh--hhccchHhhhcc---------CCCcC-cCC-CchhCcChhhCcCCCCc
Confidence            99999954433  355666655432         12232 556 48889999999998754

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.79  E-value=1.2e-18  Score=173.95  Aligned_cols=117  Identities=21%  Similarity=0.304  Sum_probs=60.3

Q ss_pred             cEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCc
Q 045139          598 TVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRS  677 (820)
Q Consensus       598 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~  677 (820)
                      +.++++++.++ .+|..+.  ++++.|++++|++++..+..|..+++|++|+|++|++++..|..+. .+++|++|+|++
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~-~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ-GLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTT-TCSSCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhh-CCcCCCEEECCC
Confidence            45666666665 3444332  4555555555555555444555555555555555555544444444 455555555555


Q ss_pred             ccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccc
Q 045139          678 NNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAM  718 (820)
Q Consensus       678 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  718 (820)
                      |++++..+..|..+++|+.|+|++|++++..|..|.+++.|
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  130 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNL  130 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCC
Confidence            55553333334445555555555555554444444444443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=6e-19  Score=190.66  Aligned_cols=130  Identities=24%  Similarity=0.191  Sum_probs=88.1

Q ss_pred             ccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcc-cccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          573 FRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMD-FNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       573 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      -+.++++++.++ .+|..+.  +.++.|+|++|++++..+..+. .+++|++|+|++|+|++..+..|.++++|++|+|+
T Consensus        20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            357777777777 4565443  4567777777777766666666 67777777777777776666667777777777777


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCcc
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISG  706 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  706 (820)
                      +|++++..+..+. .+++|++|+|++|++++..|..|..+++|+.|+|++|++++
T Consensus        97 ~N~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~  150 (361)
T 2xot_A           97 SNHLHTLDEFLFS-DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR  150 (361)
T ss_dssp             SSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred             CCcCCcCCHHHhC-CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence            7777644444444 56777777777777766666666666677777777666663

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=2.9e-18  Score=172.33  Aligned_cols=154  Identities=21%  Similarity=0.254  Sum_probs=105.1

Q ss_pred             CcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcC
Q 045139          597 LTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLR  676 (820)
Q Consensus       597 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~  676 (820)
                      .+.++.+++++. .+|..+.  ++|++|++++|.+++..|..|..+++|++|+|++|++++..+..+. .+++|++|+|+
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~-~l~~L~~L~Ls   96 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD-SLTQLTVLDLG   96 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECC
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcc-cCCCcCEEECC
Confidence            456788888776 5665443  6777788888777777777777777777777777777633333333 67777777777


Q ss_pred             cccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeecccccccccc
Q 045139          677 SNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTL  756 (820)
Q Consensus       677 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  756 (820)
                      +|++++..+..+..+++|+.|++++|+++ .+|..+.++++|                                      
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L--------------------------------------  137 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHL--------------------------------------  137 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTC--------------------------------------
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCC--------------------------------------
Confidence            77777665566677777777777777776 566666655555                                      


Q ss_pred             CceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCC
Q 045139          757 GLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPI  796 (820)
Q Consensus       757 ~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~i  796 (820)
                         +.|||++|++++..+ .+..+++|+.|++++|.+.+..
T Consensus       138 ---~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          138 ---THLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             ---SEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             ---CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence               667777777764444 5666777777777777766543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.77  E-value=1.5e-18  Score=170.12  Aligned_cols=155  Identities=19%  Similarity=0.212  Sum_probs=111.4

Q ss_pred             ccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCC
Q 045139          616 DFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQ  695 (820)
Q Consensus       616 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  695 (820)
                      +.+++|++|++++|.+. .+| .+..+++|++|++++|.++ .+ ..+. .+++|++|++++|++++..|..+..+++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NY-NPIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CC-GGGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cc-hhhh-cCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            45566666666666666 344 5667777777777777654 22 3454 577888888888888776777788888888


Q ss_pred             EEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCCC
Q 045139          696 VLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPE  775 (820)
Q Consensus       696 ~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~  775 (820)
                      +|++++|++++..|..+.+++.|                                         +.|++++|++.+.+|.
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L-----------------------------------------~~L~L~~n~~i~~~~~  154 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKV-----------------------------------------NSIDLSYNGAITDIMP  154 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSC-----------------------------------------CEEECCSCTBCCCCGG
T ss_pred             EEEecCCccCcHhHHHHhhCCCC-----------------------------------------CEEEccCCCCccccHh
Confidence            88888888887777777777666                                         7888888873346777


Q ss_pred             cccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCcCcc
Q 045139          776 VTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLMR  818 (820)
Q Consensus       776 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~g  818 (820)
                      +..+++|+.|++++|++++ ++ .+..+++|++|++++|++.+
T Consensus       155 l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          155 LKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             GGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             hcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            8888888888888888885 44 67888888888888888865

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=4.4e-18  Score=169.85  Aligned_cols=142  Identities=20%  Similarity=0.233  Sum_probs=103.5

Q ss_pred             ccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCC-CCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          573 FRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIP-DSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       573 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      -+.+++++|.++ .+|..+.  +.+++|++++|++++..| ..|..+++|++|++++|++++..+..|.++++|++|+|+
T Consensus        13 ~~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           13 GTTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TTEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            357777777776 4565443  346778888888776644 456777778888888888777777777777888888888


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccc
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAM  718 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  718 (820)
                      +|++++..|..+. .+++|++|+|++|++++..|..+..+++|+.|+|++|++++..|..|..++.|
T Consensus        90 ~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  155 (220)
T 2v70_A           90 SNRLENVQHKMFK-GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL  155 (220)
T ss_dssp             SSCCCCCCGGGGT-TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTC
T ss_pred             CCccCccCHhHhc-CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCC
Confidence            8887765555555 67788888888888877777777777888888888888877667777776666

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=1.1e-18  Score=199.75  Aligned_cols=169  Identities=26%  Similarity=0.317  Sum_probs=121.1

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      +|+.|++++|.+.. +| .+..+++|+.|+|++|++.+..|  +..+++|+.|+|++|.+.+ +| .+..+++|++|+|+
T Consensus        44 ~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls  117 (605)
T 1m9s_A           44 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLE  117 (605)
T ss_dssp             TCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECT
T ss_pred             CCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEec
Confidence            67777777777763 33 47777778888888887775444  7777778888888887775 23 57777778888888


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP  731 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~  731 (820)
                      +|++.+ +| .+. .+++|+.|+|++|++++.  ..+..+++|+.|+|++|++++..|  +..++.|             
T Consensus       118 ~N~l~~-l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L-------------  177 (605)
T 1m9s_A          118 HNGISD-IN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL-------------  177 (605)
T ss_dssp             TSCCCC-CG-GGG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTC-------------
T ss_pred             CCCCCC-Cc-ccc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCC-------------
Confidence            887774 33 344 577788888888877754  567777778888888887776555  5555555             


Q ss_pred             CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCccccC
Q 045139          732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGP  795 (820)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~~  795 (820)
                                                  +.|+|++|++++ +|.+..+++|+.|+|++|.+++.
T Consensus       178 ----------------------------~~L~Ls~N~i~~-l~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          178 ----------------------------QNLYLSKNHISD-LRALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             ----------------------------CEEECCSSCCCB-CGGGTTCTTCSEEECCSEEEECC
T ss_pred             ----------------------------CEEECcCCCCCC-ChHHccCCCCCEEEccCCcCcCC
Confidence                                        778888887773 56777777888888888877754

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=2.1e-18  Score=180.14  Aligned_cols=187  Identities=22%  Similarity=0.362  Sum_probs=122.2

Q ss_pred             EEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCc
Q 045139          575 YLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNK  654 (820)
Q Consensus       575 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  654 (820)
                      .+.+..+.+++..+  +..+++|++|++++|.+.+ ++ .++.+++|++|++++|++++..+  +..+++|++|++++|+
T Consensus        28 ~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~  101 (291)
T 1h6t_A           28 KDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK  101 (291)
T ss_dssp             HHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             HHHhcCCCcccccc--hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc
Confidence            34455555543322  3456777777777777764 33 36777777777777777775443  7777777777777777


Q ss_pred             CccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCcc
Q 045139          655 ISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRT  734 (820)
Q Consensus       655 l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~  734 (820)
                      +++ +|. +. .+++|++|++++|++++.  ..+..+++|+.|++++|++++.  ..+..++.|                
T Consensus       102 l~~-~~~-l~-~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L----------------  158 (291)
T 1h6t_A          102 VKD-LSS-LK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL----------------  158 (291)
T ss_dssp             CCC-GGG-GT-TCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTC----------------
T ss_pred             CCC-Chh-hc-cCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCC----------------
Confidence            764 333 44 577777777777777653  3566777777777777777643  344554444                


Q ss_pred             ccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCC
Q 045139          735 DYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKN  814 (820)
Q Consensus       735 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N  814 (820)
                                               +.|++++|++++..| +..+++|+.|++++|++++ +|. +..+++|+.||+++|
T Consensus       159 -------------------------~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          159 -------------------------DTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFSQ  210 (291)
T ss_dssp             -------------------------SEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEEE
T ss_pred             -------------------------CEEEccCCccccchh-hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEEECcCC
Confidence                                     677777777764444 6677777777777777764 343 677777777777777


Q ss_pred             cCcc
Q 045139          815 MLMR  818 (820)
Q Consensus       815 ~l~g  818 (820)
                      ++++
T Consensus       211 ~i~~  214 (291)
T 1h6t_A          211 ECLN  214 (291)
T ss_dssp             EEEC
T ss_pred             cccC
Confidence            7653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=6.1e-18  Score=168.78  Aligned_cols=141  Identities=21%  Similarity=0.262  Sum_probs=108.7

Q ss_pred             cEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCC
Q 045139          574 RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHN  653 (820)
Q Consensus       574 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  653 (820)
                      +.++++++.++ .+|..+.  +++++|++++|++++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            56778888777 5565544  67888888888888777777888888888888888888777888888888888888888


Q ss_pred             cCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccc
Q 045139          654 KISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAM  718 (820)
Q Consensus       654 ~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  718 (820)
                      +++ .+|..++..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..+..++.|
T Consensus        91 ~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  154 (220)
T 2v9t_B           91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI  154 (220)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             cCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCC
Confidence            887 4554433368888888888888887777888888888888888888886666667766666

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=3.7e-18  Score=184.43  Aligned_cols=144  Identities=22%  Similarity=0.141  Sum_probs=78.0

Q ss_pred             cccEEEccCCccccccCcccc-cCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEEC
Q 045139          572 HFRYLDLSDNLLSGELPNCSK-NWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDL  650 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  650 (820)
                      .++.|++++|++++..+..+. ++++|++|+|++|+|++..+..|..+++|++|+|++|++++..+..|.++++|++|+|
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  119 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL  119 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence            455566666665555555454 5556666666666665555555555566666666666655555555555566666666


Q ss_pred             CCCcCccccCcchhcCCCCccEEEcCcccccccCCccc---CCCCCCCEEeCcCCCCccccchhccccc
Q 045139          651 GHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV---CHLQRIQVLDLSQNNISGTVPQCLNNLT  716 (820)
Q Consensus       651 s~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  716 (820)
                      ++|+|++..|..+. .+++|+.|+|++|++++..+..+   ..+++|+.|||++|++++..+..+..++
T Consensus       120 ~~N~i~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~  187 (361)
T 2xot_A          120 YNNHIVVVDRNAFE-DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP  187 (361)
T ss_dssp             CSSCCCEECTTTTT-TCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSC
T ss_pred             CCCcccEECHHHhC-CcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhcc
Confidence            66666544444444 45566666666666553222222   3455566666666655533333444443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=6.2e-18  Score=193.57  Aligned_cols=148  Identities=28%  Similarity=0.314  Sum_probs=83.3

Q ss_pred             CCcceEEeccCcccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEE
Q 045139          545 PLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSL  624 (820)
Q Consensus       545 ~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  624 (820)
                      +..++.|++++|.+.... .+....  +|+.|+|++|.+++..|  +..+++|+.|+|++|++.+ +| .+..+++|+.|
T Consensus        42 L~~L~~L~l~~n~i~~l~-~l~~l~--~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L  114 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQ-GIQYLP--NVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL  114 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCT-TGGGCT--TCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEE
T ss_pred             CCCCCEEECcCCCCCCCh-HHccCC--CCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEE
Confidence            345555566666554432 221111  56666666666654433  5566666666666666653 22 45666666666


Q ss_pred             eccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCC
Q 045139          625 HLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNI  704 (820)
Q Consensus       625 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  704 (820)
                      +|++|++.+.  ..+..+++|+.|+|++|++++.  ..+. .+++|+.|+|++|++.+..|  +..+++|+.|+|++|++
T Consensus       115 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i  187 (605)
T 1m9s_A          115 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLS-RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  187 (605)
T ss_dssp             ECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGG-SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhc-ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence            6666666542  3456666666666666666543  3343 46666666666666665444  56666666666666666


Q ss_pred             cc
Q 045139          705 SG  706 (820)
Q Consensus       705 ~~  706 (820)
                      ++
T Consensus       188 ~~  189 (605)
T 1m9s_A          188 SD  189 (605)
T ss_dssp             CB
T ss_pred             CC
Confidence            54

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.75  E-value=3.2e-19  Score=209.63  Aligned_cols=195  Identities=23%  Similarity=0.234  Sum_probs=125.4

Q ss_pred             ccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCC
Q 045139          573 FRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGH  652 (820)
Q Consensus       573 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  652 (820)
                      +..++++.|.+. ..|+.+..++.|+.|+|++|++. .+|..+..+++|++|+|++|.|+ .+|..++++++|++|+|++
T Consensus       203 i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~  279 (727)
T 4b8c_D          203 IDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSH  279 (727)
T ss_dssp             --------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTT
T ss_pred             ccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcC
Confidence            445566667666 67888999999999999999998 78888889999999999999999 8899999999999999999


Q ss_pred             CcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCC
Q 045139          653 NKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPL  732 (820)
Q Consensus       653 N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~  732 (820)
                      |+|+ .+|..++ .+++|++|+|++|.++ .+|..|+.+++|+.|+|++|++++.+|..+..+....             
T Consensus       280 N~l~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~-------------  343 (727)
T 4b8c_D          280 NRLT-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTG-------------  343 (727)
T ss_dssp             SCCS-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHH-------------
T ss_pred             CcCC-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhh-------------
Confidence            9999 8899998 7999999999999998 7898899999999999999999999998887654320             


Q ss_pred             ccccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCC--------ccccCCcccccCCC
Q 045139          733 RTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKN--------SLTGPIPSKIGGLT  804 (820)
Q Consensus       733 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N--------~l~~~ip~~l~~l~  804 (820)
                                                 ..++|++|.++|.+|     ..|+.|++++|        .+.+.++..+..+.
T Consensus       344 ---------------------------~~l~l~~N~l~~~~p-----~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~  391 (727)
T 4b8c_D          344 ---------------------------LIFYLRDNRPEIPLP-----HERRFIEINTDGEPQREYDSLQQSTEHLATDLA  391 (727)
T ss_dssp             ---------------------------HHHHHHHCCCCCCCC-----CC-------------------------------
T ss_pred             ---------------------------hHHhhccCcccCcCc-----cccceeEeecccccccccCCccccccchhhccc
Confidence                                       236788888888877     23445666666        45555555566677


Q ss_pred             CCCeEeCCCCcCcc
Q 045139          805 LLNSLDLSKNMLMR  818 (820)
Q Consensus       805 ~L~~LdLs~N~l~g  818 (820)
                      .++...+++|-+.+
T Consensus       392 ~~~~~~ls~Nil~~  405 (727)
T 4b8c_D          392 KRTFTVLSYNTLCQ  405 (727)
T ss_dssp             ----------CCCG
T ss_pred             ccceeeeecccccc
Confidence            77778888887753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.75  E-value=1.4e-18  Score=178.55  Aligned_cols=168  Identities=20%  Similarity=0.299  Sum_probs=138.5

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      .+..+++++|.+++..  .+..+++|++|++++|+++. +| .++.+++|++|++++|++++..+  +..+++|++|+++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            6777888999888543  57889999999999999984 55 78889999999999999987554  8899999999999


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP  731 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~  731 (820)
                      +|++++ +|.. . . ++|+.|++++|++++.  ..+..+++|+.|++++|++++. | .+..++.|             
T Consensus        94 ~N~l~~-l~~~-~-~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L-------------  152 (263)
T 1xeu_A           94 RNRLKN-LNGI-P-S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKL-------------  152 (263)
T ss_dssp             SSCCSC-CTTC-C-C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTC-------------
T ss_pred             CCccCC-cCcc-c-c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCC-------------
Confidence            999985 5543 2 3 8899999999999863  3588899999999999999853 3 46666655             


Q ss_pred             CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCccccC
Q 045139          732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGP  795 (820)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~~  795 (820)
                                                  +.|++++|++++. +.+..+++|+.|++++|.+++.
T Consensus       153 ----------------------------~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          153 ----------------------------EVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             ----------------------------CEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred             ----------------------------CEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCC
Confidence                                        8899999999855 7888899999999999999865

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=3.1e-17  Score=164.81  Aligned_cols=157  Identities=23%  Similarity=0.244  Sum_probs=135.9

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      .-+.++.+++.++ .+|..+.  ++|++|++++|++++..|..|..+++|++|+|++|++.+..+..|..+++|++|+|+
T Consensus        20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            4578999999987 6776554  889999999999999889999999999999999999987777778999999999999


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP  731 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~  731 (820)
                      +|++++..+..+. .+++|++|+|++|+++ .+|..+..+++|+.|++++|++++..+..+..++.|             
T Consensus        97 ~N~l~~l~~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-------------  161 (229)
T 3e6j_A           97 TNQLTVLPSAVFD-RLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL-------------  161 (229)
T ss_dssp             SSCCCCCCTTTTT-TCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred             CCcCCccChhHhC-cchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCC-------------
Confidence            9999965555555 7999999999999999 788899999999999999999996666677777776             


Q ss_pred             CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC
Q 045139          732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP  774 (820)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip  774 (820)
                                                  +.|+|++|++++..+
T Consensus       162 ----------------------------~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          162 ----------------------------THAYLFGNPWDCECR  176 (229)
T ss_dssp             ----------------------------CEEECTTSCBCTTBG
T ss_pred             ----------------------------CEEEeeCCCccCCcc
Confidence                                        889999999986554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=9.4e-18  Score=164.50  Aligned_cols=156  Identities=15%  Similarity=0.252  Sum_probs=124.3

Q ss_pred             cccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCc
Q 045139          591 SKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDL  670 (820)
Q Consensus       591 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L  670 (820)
                      ...+++|++|++++|.++ .+| .+..+++|++|++++|.+.  .+..+..+++|++|++++|++++..|..+. .+++|
T Consensus        40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L  114 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLS-GLTSL  114 (197)
T ss_dssp             HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCT-TCTTC
T ss_pred             hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhc-CCCCC
Confidence            366778888888888888 556 6888888999999888665  335788889999999999999877788887 78999


Q ss_pred             cEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeecccc
Q 045139          671 VVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDS  750 (820)
Q Consensus       671 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  750 (820)
                      ++|++++|++++..|..+..+++|+.|++++|++.+.+| .+.+++.|                                
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L--------------------------------  161 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPEL--------------------------------  161 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSC--------------------------------
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCC--------------------------------
Confidence            999999999988788888899999999999998333555 46666655                                


Q ss_pred             ccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCcccc
Q 045139          751 EYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTG  794 (820)
Q Consensus       751 ~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~  794 (820)
                               +.|++++|+++ .++.+..+++|+.|++++|++.+
T Consensus       162 ---------~~L~l~~n~i~-~~~~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          162 ---------KSLNIQFDGVH-DYRGIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             ---------CEEECTTBCCC-CCTTGGGCSSCCEEEECBC----
T ss_pred             ---------CEEECCCCCCc-ChHHhccCCCCCEEEeeCcccCC
Confidence                     88999999998 46688889999999999998864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.71  E-value=1.3e-19  Score=206.18  Aligned_cols=192  Identities=21%  Similarity=0.220  Sum_probs=153.7

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCe-------------eeecCCCCcccccCCcEEe-ccCCcccccCCc
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNK-------------FSGKIPDSMDFNCMMLSLH-LRNNSFIGELPS  637 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-------------l~~~~p~~l~~l~~L~~L~-Ls~N~l~~~~p~  637 (820)
                      +++.|++++|+++ .+|..++.+++|++|++++|.             +.+.+|..++.+++|+.|+ ++.|.+......
T Consensus       350 ~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l  428 (567)
T 1dce_A          350 QLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK  428 (567)
T ss_dssp             TSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             cceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence            7889999999997 789999999999999998775             5567777888888888888 565544311000


Q ss_pred             -----chhc--CCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccch
Q 045139          638 -----SVKS--FTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQ  710 (820)
Q Consensus       638 -----~l~~--l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  710 (820)
                           .+..  ...|+.|++++|++++ +|. +. .+++|+.|+|++|+++ .+|..++.+++|+.|+|++|++++ +| 
T Consensus       429 ~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-  502 (567)
T 1dce_A          429 FLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LE-QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-  502 (567)
T ss_dssp             HHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GG-GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-
T ss_pred             hhhcccccccCccCceEEEecCCCCCC-CcC-cc-ccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-
Confidence                 0111  1258899999999985 776 66 7999999999999999 788999999999999999999986 67 


Q ss_pred             hccccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecC-C-CcccccCCCEEeCC
Q 045139          711 CLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEI-P-EVTSLVGLISLNLS  788 (820)
Q Consensus       711 ~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~i-p-~l~~l~~L~~L~Ls  788 (820)
                      .+++++.|                                         +.|||++|++++.+ | .++.+++|+.|+|+
T Consensus       503 ~l~~l~~L-----------------------------------------~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~  541 (567)
T 1dce_A          503 GVANLPRL-----------------------------------------QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ  541 (567)
T ss_dssp             GGTTCSSC-----------------------------------------CEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred             ccCCCCCC-----------------------------------------cEEECCCCCCCCCCCcHHHhcCCCCCEEEec
Confidence            77777777                                         88999999999776 8 89999999999999


Q ss_pred             CCccccCCccc---ccCCCCCCeEeC
Q 045139          789 KNSLTGPIPSK---IGGLTLLNSLDL  811 (820)
Q Consensus       789 ~N~l~~~ip~~---l~~l~~L~~LdL  811 (820)
                      +|.+++.+|..   +..+++|+.||+
T Consensus       542 ~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          542 GNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             TSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCcCCCCccHHHHHHHHCcccCccCC
Confidence            99999776532   334788999875

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.71  E-value=1.2e-19  Score=206.67  Aligned_cols=181  Identities=20%  Similarity=0.211  Sum_probs=156.8

Q ss_pred             ccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCc-------------ccccCCcchhcCCCCCEEE-CCCCcCcc
Q 045139          592 KNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNS-------------FIGELPSSVKSFTQLTVLD-LGHNKISG  657 (820)
Q Consensus       592 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-------------l~~~~p~~l~~l~~L~~L~-Ls~N~l~~  657 (820)
                      ..++.|+.|+|++|++. .+|..++.+++|+.|++++|.             +.+.+|..++.+++|+.|+ ++.|.+. 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            56789999999999998 789999999999999998875             6678888999999999999 6776544 


Q ss_pred             ccCc------chhc-CCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCccccc
Q 045139          658 IIPA------WIGD-SLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRY  730 (820)
Q Consensus       658 ~~p~------~l~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~  730 (820)
                      .++.      .+.. ....|+.|+|++|++++ +|. ++.+++|+.|+|++|+++ .+|..+++++.|            
T Consensus       424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L------------  488 (567)
T 1dce_A          424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCL------------  488 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTC------------
T ss_pred             hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCC------------
Confidence            2221      0100 12368999999999996 676 999999999999999999 889999988888            


Q ss_pred             CCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCccccCC-cccccCCCCCCeE
Q 045139          731 PLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPI-PSKIGGLTLLNSL  809 (820)
Q Consensus       731 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~~i-p~~l~~l~~L~~L  809 (820)
                                                   +.|+|++|++++ +|.++.+++|+.|+|++|++++.+ |..|+.+++|+.|
T Consensus       489 -----------------------------~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L  538 (567)
T 1dce_A          489 -----------------------------EVLQASDNALEN-VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL  538 (567)
T ss_dssp             -----------------------------CEEECCSSCCCC-CGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred             -----------------------------CEEECCCCCCCC-CcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence                                         899999999995 789999999999999999999887 9999999999999


Q ss_pred             eCCCCcCccc
Q 045139          810 DLSKNMLMRA  819 (820)
Q Consensus       810 dLs~N~l~g~  819 (820)
                      ||++|+|+|.
T Consensus       539 ~L~~N~l~~~  548 (567)
T 1dce_A          539 NLQGNSLCQE  548 (567)
T ss_dssp             ECTTSGGGGS
T ss_pred             EecCCcCCCC
Confidence            9999999885

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=2.3e-17  Score=169.38  Aligned_cols=155  Identities=22%  Similarity=0.266  Sum_probs=104.2

Q ss_pred             cceEEeccCcccccccchhhccccccccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEec
Q 045139          547 TVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHL  626 (820)
Q Consensus       547 ~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  626 (820)
                      .+..+++..+.+.+... .....  +|++|++++|.++ .+| .+..+++|++|++++|++++..+  ++.+++|++|++
T Consensus        20 ~l~~l~l~~~~i~~~~~-~~~l~--~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLVS-QKELS--GVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHTCSCTTSEEC-HHHHT--TCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHhcCCCcccccc-hhhcC--cCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            44555666666655432 11111  6788888888777 344 57777888888888888875444  777888888888


Q ss_pred             cCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCcc
Q 045139          627 RNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISG  706 (820)
Q Consensus       627 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  706 (820)
                      ++|++++. |. +.. ++|++|++++|++++ +| .+. .+++|++|++++|++++. | .+..+++|+.|++++|++++
T Consensus        93 ~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~-~~-~l~-~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A           93 NRNRLKNL-NG-IPS-ACLSRLFLDNNELRD-TD-SLI-HLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             CSSCCSCC-TT-CCC-SSCCEEECCSSCCSB-SG-GGT-TCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred             CCCccCCc-Cc-ccc-CcccEEEccCCccCC-Ch-hhc-CcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence            88888753 32 222 778888888888874 34 354 678888888888888754 3 57777888888888888775


Q ss_pred             ccchhccccccc
Q 045139          707 TVPQCLNNLTAM  718 (820)
Q Consensus       707 ~~p~~l~~l~~L  718 (820)
                      .  ..+..++.|
T Consensus       165 ~--~~l~~l~~L  174 (263)
T 1xeu_A          165 T--GGLTRLKKV  174 (263)
T ss_dssp             C--TTSTTCCCC
T ss_pred             h--HHhccCCCC
Confidence            4  445554444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=3.1e-17  Score=159.96  Aligned_cols=134  Identities=24%  Similarity=0.282  Sum_probs=111.5

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCC-CcccccCCcEEeccCCcccccCCcchhcCCCCCEEEC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPD-SMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDL  650 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  650 (820)
                      .-+++++++|.++ .+|..+.  .++++|++++|++++..+. .|+.+++|++|++++|++++..|..|.++++|++|+|
T Consensus         9 ~~~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A            9 EGTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence            3478999999986 6776554  3889999999999876664 4888899999999999998888888888999999999


Q ss_pred             CCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccc
Q 045139          651 GHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVP  709 (820)
Q Consensus       651 s~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  709 (820)
                      ++|++++..|..+. .+++|++|+|++|++++..|..+..+++|+.|++++|++.+..+
T Consensus        86 s~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           86 GENKIKEISNKMFL-GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CSCCCCEECSSSST-TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCCcCCccCHHHhc-CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            99999877777676 68889999999999988888888888889999999988886654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=6.7e-17  Score=157.53  Aligned_cols=93  Identities=26%  Similarity=0.358  Sum_probs=42.8

Q ss_pred             cEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcc-hhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCc
Q 045139          622 LSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAW-IGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLS  700 (820)
Q Consensus       622 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  700 (820)
                      +++++++|.++ .+|..+..  +|++|++++|++++..+.. +. .+++|++|+|++|++++..|..|..+++|++|+|+
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFG-RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGG-GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccc-cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            44555555553 33433322  4555555555554333321 32 44555555555555554444445555555555555


Q ss_pred             CCCCccccchhccccccc
Q 045139          701 QNNISGTVPQCLNNLTAM  718 (820)
Q Consensus       701 ~N~l~~~~p~~l~~l~~L  718 (820)
                      +|++++..|..|.+++.|
T Consensus        87 ~N~l~~~~~~~~~~l~~L  104 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQL  104 (192)
T ss_dssp             SCCCCEECSSSSTTCTTC
T ss_pred             CCcCCccCHHHhcCCCCC
Confidence            555544444444444333

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=6.3e-18  Score=198.62  Aligned_cols=235  Identities=16%  Similarity=0.114  Sum_probs=131.2

Q ss_pred             CCHHHHHHHHHhhccCC-CCCCCCCCCCCCCCCCCCcccCceEecCCCCcEEEEEcCCCCCCCCcccccccccCCCCCCE
Q 045139           41 CIERERQALLMFKQGLI-DEYGHLSSWGNEDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNY  119 (820)
Q Consensus        41 ~~~~~~~~l~~~~~~~~-~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~  119 (820)
                      ....++++|+++..... .....-..|..  .....+.|.+++++  .++++.++|.+   +.+.. ++..+.....|+.
T Consensus       129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s--~~~~~~l~L~~---n~~~~-~~~~~l~~l~Ls~  200 (727)
T 4b8c_D          129 LVDCTKQALMEMADTLTDSKTAKKQQPTG--DSTPSGTATNSAVS--TPLTPKIELFA---NGKDE-ANQALLQHKKLSQ  200 (727)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred             ccccchhhhhhhhhhcccccCcccCCCcC--CCCccccCCCceec--CCccceEEeeC---CCCCc-chhhHhhcCccCc
Confidence            45567889999876653 12233346653  34556789998885  46899999987   55554 3443333333333


Q ss_pred             E-----ECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCee
Q 045139          120 L-----NMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYV  194 (820)
Q Consensus       120 L-----~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L  194 (820)
                      +     +++.|.+.  ..|..+..++.|++|+|++|.+. .+|..+..+++|++|+|++| .+ ...+..++++++|++|
T Consensus       201 ~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N-~l-~~lp~~~~~l~~L~~L  275 (727)
T 4b8c_D          201 YSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGN-SL-TELPAEIKNLSNLRVL  275 (727)
T ss_dssp             -----------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTS-CC-SCCCGGGGGGTTCCEE
T ss_pred             ccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCC-cC-cccChhhhCCCCCCEE
Confidence            2     23333332  15777889999999999999998 88888889999999999999 23 3556778999999999


Q ss_pred             eCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEEE
Q 045139          195 RLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLD  274 (820)
Q Consensus       195 ~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~  274 (820)
                      +|++|.++.   +|..++++++|++|+|++|.++. +|   ..++.+ ++|++|+|++|.+++.+|..+.........++
T Consensus       276 ~Ls~N~l~~---lp~~~~~l~~L~~L~L~~N~l~~-lp---~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~  347 (727)
T 4b8c_D          276 DLSHNRLTS---LPAELGSCFQLKYFYFFDNMVTT-LP---WEFGNL-CNLQFLGVEGNPLEKQFLKILTEKSVTGLIFY  347 (727)
T ss_dssp             ECTTSCCSS---CCSSGGGGTTCSEEECCSSCCCC-CC---SSTTSC-TTCCCEECTTSCCCSHHHHHHHHHHHHHHHHH
T ss_pred             eCcCCcCCc---cChhhcCCCCCCEEECCCCCCCc-cC---hhhhcC-CCccEEeCCCCccCCCChHHHhhcchhhhHHh
Confidence            999999985   57788999999999999999974 45   457777 99999999999999999988876542445688


Q ss_pred             ccCCcccCCCCCCCCCCCCCCCEEECCCC
Q 045139          275 LSSNKLQGPIPDSAFPNPTSLSYLDLSNN  303 (820)
Q Consensus       275 Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n  303 (820)
                      +++|.++|.+|..       |+.|+++.|
T Consensus       348 l~~N~l~~~~p~~-------l~~l~l~~n  369 (727)
T 4b8c_D          348 LRDNRPEIPLPHE-------RRFIEINTD  369 (727)
T ss_dssp             HHHCCCCCCCCCC----------------
T ss_pred             hccCcccCcCccc-------cceeEeecc
Confidence            9999999888765       566777766

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.63  E-value=1.4e-15  Score=148.15  Aligned_cols=127  Identities=28%  Similarity=0.376  Sum_probs=69.5

Q ss_pred             CEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCC
Q 045139          646 TVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSN  725 (820)
Q Consensus       646 ~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~  725 (820)
                      +.+++++|.++ .+|..+   .++|++|++++|+++ .+|..+..+++|+.|++++|++++..|..|.+++.|       
T Consensus        13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L-------   80 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL-------   80 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred             CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC-------
Confidence            34555555554 444433   235555555555555 444555555555555555555555444455555444       


Q ss_pred             cccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCC
Q 045139          726 AMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLT  804 (820)
Q Consensus       726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~  804 (820)
                                                        +.|||++|++++..| .+..+++|+.|+|++|++++..+..|..++
T Consensus        81 ----------------------------------~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~  126 (193)
T 2wfh_A           81 ----------------------------------LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS  126 (193)
T ss_dssp             ----------------------------------CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred             ----------------------------------CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCc
Confidence                                              555666666554444 555566666666666666644444555566


Q ss_pred             CCCeEeCCCCcCcc
Q 045139          805 LLNSLDLSKNMLMR  818 (820)
Q Consensus       805 ~L~~LdLs~N~l~g  818 (820)
                      +|+.|++++|++.+
T Consensus       127 ~L~~L~L~~N~~~C  140 (193)
T 2wfh_A          127 ALSHLAIGANPLYC  140 (193)
T ss_dssp             TCCEEECCSSCEEC
T ss_pred             cccEEEeCCCCeec
Confidence            66666666666543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=7.9e-16  Score=146.55  Aligned_cols=135  Identities=21%  Similarity=0.203  Sum_probs=120.5

Q ss_pred             cccEEEccCCccc-cccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEEC
Q 045139          572 HFRYLDLSDNLLS-GELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDL  650 (820)
Q Consensus       572 ~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  650 (820)
                      +++.|++++|.++ +.+|..+..+++|++|++++|++++.  ..++.+++|++|++++|++++.+|..+..+++|++|++
T Consensus        25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            8999999999998 78898899999999999999999865  78999999999999999999888988889999999999


Q ss_pred             CCCcCccccC-cchhcCCCCccEEEcCcccccccCC---cccCCCCCCCEEeCcCCCCccccch
Q 045139          651 GHNKISGIIP-AWIGDSLPDLVVLSLRSNNFHGRVP---VQVCHLQRIQVLDLSQNNISGTVPQ  710 (820)
Q Consensus       651 s~N~l~~~~p-~~l~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~~p~  710 (820)
                      ++|++++..+ ..+. .+++|++|++++|++++..+   ..+..+++|+.|++++|.+. .+|.
T Consensus       103 s~N~l~~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          103 SGNKLKDISTLEPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             BSSSCCSSGGGGGGS-SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             cCCccCcchhHHHHh-cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            9999985322 5666 79999999999999996555   48899999999999999987 4554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=8.1e-16  Score=146.47  Aligned_cols=131  Identities=24%  Similarity=0.224  Sum_probs=73.2

Q ss_pred             CCCCEEECCCCcCc-cccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhcccccccccc
Q 045139          643 TQLTVLDLGHNKIS-GIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTAN  721 (820)
Q Consensus       643 ~~L~~L~Ls~N~l~-~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~  721 (820)
                      ++|++|++++|+++ +.+|..+. .+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+.+++.|   
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L---   97 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL---   97 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC---
T ss_pred             ccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC---
Confidence            44555555555554 44554443 455555555555555533  455555666666666666655555555545444   


Q ss_pred             ccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecC--CCcccccCCCEEeCCCCccccCCc--
Q 045139          722 KSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEI--PEVTSLVGLISLNLSKNSLTGPIP--  797 (820)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~i--p~l~~l~~L~~L~Ls~N~l~~~ip--  797 (820)
                                                            +.|++++|++++..  +.+..+++|++|++++|.+++..+  
T Consensus        98 --------------------------------------~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~  139 (168)
T 2ell_A           98 --------------------------------------THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYR  139 (168)
T ss_dssp             --------------------------------------CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHH
T ss_pred             --------------------------------------CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHH
Confidence                                                  55666666665421  255566666666666666664433  


Q ss_pred             -ccccCCCCCCeEeCCCCcCc
Q 045139          798 -SKIGGLTLLNSLDLSKNMLM  817 (820)
Q Consensus       798 -~~l~~l~~L~~LdLs~N~l~  817 (820)
                       ..+..+++|++||+++|.+.
T Consensus       140 ~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          140 ESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             HHHHTTCSSCCEETTEETTSC
T ss_pred             HHHHHhCccCcEecCCCCChh
Confidence             35566666666666666553

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=7.7e-16  Score=143.38  Aligned_cols=127  Identities=20%  Similarity=0.247  Sum_probs=100.9

Q ss_pred             CCCCEEECCCCcCc-cccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhcccccccccc
Q 045139          643 TQLTVLDLGHNKIS-GIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTAN  721 (820)
Q Consensus       643 ~~L~~L~Ls~N~l~-~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~  721 (820)
                      ++|+.|++++|.++ +.+|..+. .+++|++|++++|++++.  ..+..+++|++|++++|++++.+|..+.+++.|   
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L---   90 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTD-EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL---   90 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCT-TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC---
T ss_pred             ccCeEEEccCCcCChhHHHHHHh-hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC---
Confidence            56777888888777 67777665 678888888888887755  667788888888888888887777777777766   


Q ss_pred             ccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeec-CC-CcccccCCCEEeCCCCccccCCc--
Q 045139          722 KSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGE-IP-EVTSLVGLISLNLSKNSLTGPIP--  797 (820)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~-ip-~l~~l~~L~~L~Ls~N~l~~~ip--  797 (820)
                                                            +.||+++|++++. .| .++.+++|++|++++|.+++..+  
T Consensus        91 --------------------------------------~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  132 (149)
T 2je0_A           91 --------------------------------------THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYR  132 (149)
T ss_dssp             --------------------------------------CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHH
T ss_pred             --------------------------------------CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHH
Confidence                                                  8889999988863 33 78888999999999999987666  


Q ss_pred             -ccccCCCCCCeEeCCC
Q 045139          798 -SKIGGLTLLNSLDLSK  813 (820)
Q Consensus       798 -~~l~~l~~L~~LdLs~  813 (820)
                       ..++.+++|++||+++
T Consensus       133 ~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          133 ENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             HHHHHHCTTCCEETTBC
T ss_pred             HHHHHHCCCcccccCCC
Confidence             5788899999999874

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=1.3e-15  Score=141.76  Aligned_cols=127  Identities=20%  Similarity=0.209  Sum_probs=110.6

Q ss_pred             cccEEEccCCccc-cccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEEC
Q 045139          572 HFRYLDLSDNLLS-GELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDL  650 (820)
Q Consensus       572 ~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  650 (820)
                      +++.|++++|.++ +.+|..+..+++|++|++++|++++.  ..++.+++|++|++++|.+++.+|..+..+++|++|++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            7899999999998 78888889999999999999999865  77889999999999999999888888888999999999


Q ss_pred             CCCcCccc-cCcchhcCCCCccEEEcCcccccccCC---cccCCCCCCCEEeCcC
Q 045139          651 GHNKISGI-IPAWIGDSLPDLVVLSLRSNNFHGRVP---VQVCHLQRIQVLDLSQ  701 (820)
Q Consensus       651 s~N~l~~~-~p~~l~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls~  701 (820)
                      ++|++++. .|..+. .+++|++|++++|++++..+   ..+..+++|+.||+++
T Consensus        96 s~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           96 SGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTSCCCSHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCcCCChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999863 336666 79999999999999987655   4788899999999874

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.60  E-value=6.8e-15  Score=141.34  Aligned_cols=93  Identities=19%  Similarity=0.302  Sum_probs=41.2

Q ss_pred             cEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcC
Q 045139          622 LSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQ  701 (820)
Q Consensus       622 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~  701 (820)
                      +.+++++|+++. +|..+  .++|++|++++|++++..+..+. .+++|++|++++|++++..+..+..+++|+.|++++
T Consensus        10 ~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A           10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFD-KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTT-TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhc-CcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            445555555442 23222  23455555555555432222233 345555555555555443333444455555555555


Q ss_pred             CCCccccchhccccccc
Q 045139          702 NNISGTVPQCLNNLTAM  718 (820)
Q Consensus       702 N~l~~~~p~~l~~l~~L  718 (820)
                      |++++..+..+.+++.|
T Consensus        86 N~l~~~~~~~~~~l~~L  102 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQL  102 (177)
T ss_dssp             SCCCCCCTTTTTTCTTC
T ss_pred             CCccccCHHHhhCCccc
Confidence            55443333333433333

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=9.7e-15  Score=142.09  Aligned_cols=130  Identities=24%  Similarity=0.247  Sum_probs=116.0

Q ss_pred             ccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCC
Q 045139          573 FRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGH  652 (820)
Q Consensus       573 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  652 (820)
                      -+.+++++|.++ .+|..+.  ++|++|++++|+++ .+|..|..+++|++|++++|++++..+..|.++++|++|+|++
T Consensus        12 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           12 DTVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            468999999998 6776553  68999999999998 6888999999999999999999998888999999999999999


Q ss_pred             CcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccc
Q 045139          653 NKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGT  707 (820)
Q Consensus       653 N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  707 (820)
                      |++++..|..+. .+++|++|+|++|++++..+..|..+++|+.|++++|++...
T Consensus        88 N~l~~i~~~~f~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A           88 NRLRCIPPRTFD-GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             SCCCBCCTTTTT-TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CccCEeCHHHhC-CCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence            999977777776 799999999999999977777899999999999999998753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.58  E-value=1.2e-14  Score=139.73  Aligned_cols=134  Identities=21%  Similarity=0.184  Sum_probs=117.1

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      ..+.+++++++++ .+|..+  .++|++|++++|++++..+..++.+++|++|++++|++++..+..+..+++|++|+++
T Consensus         8 ~~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            8 SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             ETTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            4578999999998 556544  3789999999999998777788999999999999999998877888999999999999


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccc
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVP  709 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  709 (820)
                      +|++++..+..+. .+++|++|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus        85 ~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           85 ENKLQSLPNGVFD-KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCccccCHHHhh-CCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            9999966655565 79999999999999997666667889999999999999998766

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.56  E-value=1.1e-14  Score=154.95  Aligned_cols=103  Identities=10%  Similarity=0.022  Sum_probs=75.0

Q ss_pred             cCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCC-EEECCCCcCccccCcchhcCCCCcc
Q 045139          593 NWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLT-VLDLGHNKISGIIPAWIGDSLPDLV  671 (820)
Q Consensus       593 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~~l~~L~  671 (820)
                      .+++|+.+++++|+++...+.+|.++++|+.+++.+| +..+.+.+|.+|++|+ .+++.+ .++..-+..+. ++++|+
T Consensus       224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~-~c~~L~  300 (329)
T 3sb4_A          224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFM-GCDNLR  300 (329)
T ss_dssp             HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTT-TCTTEE
T ss_pred             hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhh-CCccCC
Confidence            3677888888877777666667777778888888777 6666667778888887 888877 66633334444 678888


Q ss_pred             EEEcCcccccccCCcccCCCCCCCEEe
Q 045139          672 VLSLRSNNFHGRVPVQVCHLQRIQVLD  698 (820)
Q Consensus       672 ~L~L~~N~l~~~~p~~l~~l~~L~~L~  698 (820)
                      .+++++|+++...+.+|.++++|+.++
T Consensus       301 ~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          301 YVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EEEeCCCccCccchhhhcCCcchhhhc
Confidence            888877887766667777788887775

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.53  E-value=8.2e-17  Score=157.90  Aligned_cols=160  Identities=19%  Similarity=0.254  Sum_probs=84.6

Q ss_pred             cccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCc
Q 045139          591 SKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDL  670 (820)
Q Consensus       591 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L  670 (820)
                      +.....++.++++.+.+.+.+|.                 + ..+|..+..+++|++|++++|++++ +| .+. .+++|
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~-----------------l-~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~-~l~~L   72 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPP-----------------I-EKMDATLSTLKACKHLALSTNNIEK-IS-SLS-GMENL   72 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTT-----------------C-CCCHHHHHHTTTCSEEECSEEEESC-CC-CHH-HHTTC
T ss_pred             HHhcccccCcchheeEeccccCc-----------------H-hhhhHHHhcCCCCCEEECCCCCCcc-cc-ccc-cCCCC
Confidence            34445566666666666655554                 0 0112245555555555555555553 44 443 45555


Q ss_pred             cEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeecccc
Q 045139          671 VVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDS  750 (820)
Q Consensus       671 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  750 (820)
                      ++|++++|+++ .+|..+..+++|+.|++++|++++ +| .+.+++.|                                
T Consensus        73 ~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L--------------------------------  117 (198)
T 1ds9_A           73 RILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL--------------------------------  117 (198)
T ss_dssp             CEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS--------------------------------
T ss_pred             CEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC--------------------------------
Confidence            55555555555 344444445555666666665553 33 34444444                                


Q ss_pred             ccccccCceEEEECCCCcCeecCC--CcccccCCCEEeCCCCccccCCccc----------ccCCCCCCeEeCCCCcCc
Q 045139          751 EYRNTLGLVKSIDLSSNRLYGEIP--EVTSLVGLISLNLSKNSLTGPIPSK----------IGGLTLLNSLDLSKNMLM  817 (820)
Q Consensus       751 ~~~~~l~~L~~LdLs~N~l~~~ip--~l~~l~~L~~L~Ls~N~l~~~ip~~----------l~~l~~L~~LdLs~N~l~  817 (820)
                               +.|++++|++++..+  .+..+++|++|++++|.+++.+|..          +..+++|+.||  +|+++
T Consensus       118 ---------~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          118 ---------RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             ---------SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             ---------CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence                     556666666653221  4555666666666666666554442          55666666665  55544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.51  E-value=2.7e-14  Score=136.92  Aligned_cols=86  Identities=17%  Similarity=0.123  Sum_probs=42.2

Q ss_pred             cccccCCcEEeccCCcccccCCcchhcC-CCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCC
Q 045139          615 MDFNCMMLSLHLRNNSFIGELPSSVKSF-TQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQR  693 (820)
Q Consensus       615 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  693 (820)
                      +..+++|+.|++++|+++. +|. +..+ ++|++|++++|++++.  ..+. .+++|++|++++|++++..|..+..+++
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFP-LLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCC-CCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccc-cCCCCCEEECCCCcccccCcchhhcCCC
Confidence            3445555555555555553 232 2222 2555555555555532  2333 4555555555555555333333345555


Q ss_pred             CCEEeCcCCCCc
Q 045139          694 IQVLDLSQNNIS  705 (820)
Q Consensus       694 L~~L~Ls~N~l~  705 (820)
                      |+.|++++|+++
T Consensus        90 L~~L~L~~N~i~  101 (176)
T 1a9n_A           90 LTELILTNNSLV  101 (176)
T ss_dssp             CCEEECCSCCCC
T ss_pred             CCEEECCCCcCC
Confidence            555555555553

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.49  E-value=7.8e-14  Score=148.44  Aligned_cols=216  Identities=13%  Similarity=0.073  Sum_probs=151.2

Q ss_pred             CCcceEEeccCccccc--ccchhhccccccccEEEccCCccccccCccccc--------CCCCcEEEcCCCeeeecCCCC
Q 045139          545 PLTVTSLILFKNMFSG--SLSFLCQISDEHFRYLDLSDNLLSGELPNCSKN--------WQKLTVLNLANNKFSGKIPDS  614 (820)
Q Consensus       545 ~~~l~~l~l~~n~~~~--~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~--------l~~L~~L~Ls~N~l~~~~p~~  614 (820)
                      +.+++.|++++|.+..  ......  .  .++.+.+..|.+   .+.+|.+        |++|+.++|.+ +++...+.+
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~--~--~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~a  119 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTY--P--NGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAA  119 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSS--G--GGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTT
T ss_pred             hccCeEEecCcceeEEecCccccc--c--cccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHH
Confidence            4578888888887761  111000  0  123333333422   2344555        88888888888 777677778


Q ss_pred             cccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCc--------------------------cccCcc------
Q 045139          615 MDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKIS--------------------------GIIPAW------  662 (820)
Q Consensus       615 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~--------------------------~~~p~~------  662 (820)
                      |.++++|+.+++++|.+....+.+|.++.++..+..+.+...                          +.++..      
T Consensus       120 F~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~  199 (329)
T 3sb4_A          120 FKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGL  199 (329)
T ss_dssp             TTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTC
T ss_pred             hhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhccc
Confidence            888888888888888888777788888777777776653210                          001100      


Q ss_pred             ---------------------hhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhcccccccccc
Q 045139          663 ---------------------IGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTAN  721 (820)
Q Consensus       663 ---------------------l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~  721 (820)
                                           +...+++|+.++|++|+++...+.+|.++++|+.+++.+| +...-+.+|.++.+|   
T Consensus       200 ~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L---  275 (329)
T 3sb4_A          200 QPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRL---  275 (329)
T ss_dssp             CGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC---
T ss_pred             CccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhc---
Confidence                                 0112678888888888888666677888888888888887 664445577777777   


Q ss_pred             ccCCcccccCCccccccCceeEEeeccccccccccCceE-EEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCccc
Q 045139          722 KSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVK-SIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSK  799 (820)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~  799 (820)
                                                            + .+++.+ +++..-+ .|..+++|+.+++++|+++...+..
T Consensus       276 --------------------------------------~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~a  316 (329)
T 3sb4_A          276 --------------------------------------AGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDEL  316 (329)
T ss_dssp             --------------------------------------CEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTT
T ss_pred             --------------------------------------cEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhh
Confidence                                                  7 899988 7773444 8999999999999999999877789


Q ss_pred             ccCCCCCCeEeC
Q 045139          800 IGGLTLLNSLDL  811 (820)
Q Consensus       800 l~~l~~L~~LdL  811 (820)
                      |.++++|+.++.
T Consensus       317 F~~~~~L~~ly~  328 (329)
T 3sb4_A          317 FGNGVPSKLIYK  328 (329)
T ss_dssp             TCTTCCCCEEEC
T ss_pred             hcCCcchhhhcc
Confidence            999999999864

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=9.9e-14  Score=132.99  Aligned_cols=128  Identities=18%  Similarity=0.229  Sum_probs=109.5

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      +++.|++++|+++ .+|......++|++|++++|++++.  ..++.+++|++|++++|++++..+..+..+++|++|+++
T Consensus        20 ~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~   96 (176)
T 1a9n_A           20 RDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   96 (176)
T ss_dssp             SCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             CceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence            7899999999998 4565434344999999999999975  688999999999999999997766667999999999999


Q ss_pred             CCcCccccCc--chhcCCCCccEEEcCcccccccCCcc----cCCCCCCCEEeCcCCCCc
Q 045139          652 HNKISGIIPA--WIGDSLPDLVVLSLRSNNFHGRVPVQ----VCHLQRIQVLDLSQNNIS  705 (820)
Q Consensus       652 ~N~l~~~~p~--~l~~~l~~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~Ls~N~l~  705 (820)
                      +|+++ .+|.  .+. .+++|+.|++++|+++ .+|..    +..+++|+.||+++|...
T Consensus        97 ~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           97 NNSLV-ELGDLDPLA-SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             SCCCC-CGGGGGGGG-GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCcCC-cchhhHhhh-cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            99996 6776  666 7999999999999998 56664    889999999999999875

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.48  E-value=3e-16  Score=153.89  Aligned_cols=133  Identities=19%  Similarity=0.168  Sum_probs=109.1

Q ss_pred             cccEEEccCCccccccCc------ccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCC
Q 045139          572 HFRYLDLSDNLLSGELPN------CSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQL  645 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~------~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  645 (820)
                      .++.++++.+.++|.+|.      .+..+++|++|++++|++++ +| .+..+++|++|++++|.++ .+|..+..+++|
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L   95 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL   95 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence            678888888888888776      88999999999999999986 66 8888999999999999988 577778888899


Q ss_pred             CEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCC-cccCCCCCCCEEeCcCCCCccccch
Q 045139          646 TVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVP-VQVCHLQRIQVLDLSQNNISGTVPQ  710 (820)
Q Consensus       646 ~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~  710 (820)
                      ++|++++|++++ +| .+. .+++|++|++++|++++..+ ..+..+++|+.|++++|++++.+|.
T Consensus        96 ~~L~L~~N~l~~-l~-~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A           96 EELWISYNQIAS-LS-GIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             SEEEEEEEECCC-HH-HHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             CEEECcCCcCCc-CC-ccc-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            999999999985 55 455 68888889999888885332 4677888888888888888766554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.45  E-value=3e-13  Score=128.58  Aligned_cols=106  Identities=22%  Similarity=0.244  Sum_probs=75.2

Q ss_pred             CCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccC
Q 045139          645 LTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSS  724 (820)
Q Consensus       645 L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~  724 (820)
                      .+.+++++|.++ .+|..+   .++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|.++++|      
T Consensus        11 ~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L------   80 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL------   80 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred             CCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCC------
Confidence            467888888877 577654   3677777888777777767777777777777777777775555556666655      


Q ss_pred             CcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccC
Q 045139          725 NAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGP  795 (820)
Q Consensus       725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~  795 (820)
                                                         +.|+|++|+|++..| .+..+++|+.|+|++|.++..
T Consensus        81 -----------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           81 -----------------------------------TQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             -----------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             -----------------------------------CEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence                                               677777777775545 567777777777777777644

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.41  E-value=7e-13  Score=126.44  Aligned_cols=104  Identities=23%  Similarity=0.287  Sum_probs=76.6

Q ss_pred             CEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCC
Q 045139          646 TVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSN  725 (820)
Q Consensus       646 ~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~  725 (820)
                      +.+++++|+++ .+|..+.   ++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|.+++.|       
T Consensus        15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-------   83 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQL-------   83 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred             cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchh-------
Confidence            67888888886 6776643   677888888888887777778888888888888888875444455666666       


Q ss_pred             cccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCcccc
Q 045139          726 AMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTG  794 (820)
Q Consensus       726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~  794 (820)
                                                        +.|||++|+|++..+ .+..+++|+.|+|++|.+..
T Consensus        84 ----------------------------------~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           84 ----------------------------------TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             ----------------------------------CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ----------------------------------hEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence                                              778888888875444 47777788888888887774

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.39  E-value=1.3e-12  Score=124.14  Aligned_cols=108  Identities=21%  Similarity=0.248  Sum_probs=75.3

Q ss_pred             CcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcC
Q 045139          597 LTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLR  676 (820)
Q Consensus       597 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~  676 (820)
                      .+++++++|+++ .+|..+.  ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..|..+. .+++|++|+|+
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~-~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD-KLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhcc-CCCCCCEEECC
Confidence            345666666665 3554442  5677777777777777677777777778888888877744444444 67788888888


Q ss_pred             cccccccCCcccCCCCCCCEEeCcCCCCcccc
Q 045139          677 SNNFHGRVPVQVCHLQRIQVLDLSQNNISGTV  708 (820)
Q Consensus       677 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  708 (820)
                      +|++++..+..|..+++|+.|+|++|++....
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            88887666666778888888888888887543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.36  E-value=2.8e-12  Score=122.25  Aligned_cols=105  Identities=21%  Similarity=0.259  Sum_probs=74.7

Q ss_pred             cEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCc
Q 045139          598 TVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRS  677 (820)
Q Consensus       598 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~  677 (820)
                      +.+++++|++. .+|..+.  ++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..+. .+++|++|+|++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~-~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD-KLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhC-CcchhhEEECCC
Confidence            45666666664 4555443  6677777777777777777777778888888888888743333334 678888888888


Q ss_pred             ccccccCCcccCCCCCCCEEeCcCCCCcc
Q 045139          678 NNFHGRVPVQVCHLQRIQVLDLSQNNISG  706 (820)
Q Consensus       678 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  706 (820)
                      |++++..+..+..+++|+.|+|++|++..
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCccc
Confidence            88886555567888888888888888874

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.35  E-value=5.6e-14  Score=151.28  Aligned_cols=184  Identities=13%  Similarity=0.063  Sum_probs=128.8

Q ss_pred             CCCCcEEEcCCCeeeecCCCCcccc-----cCCcEEeccCCcccccCCcch-hcCCCCCEEECCCCcCccccCcchh---
Q 045139          594 WQKLTVLNLANNKFSGKIPDSMDFN-----CMMLSLHLRNNSFIGELPSSV-KSFTQLTVLDLGHNKISGIIPAWIG---  664 (820)
Q Consensus       594 l~~L~~L~Ls~N~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~---  664 (820)
                      ++.|++|++++|.++......+...     ++|++|+|++|.++......+ ..+++|++|+|++|.+++.....+.   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            4679999999999986544444433     689999999999975433333 3467899999999999865444442   


Q ss_pred             -cCCCCccEEEcCcccccc----cCCcccCCCCCCCEEeCcCCCCcccc----chhccccccccccccCCcccccCCccc
Q 045139          665 -DSLPDLVVLSLRSNNFHG----RVPVQVCHLQRIQVLDLSQNNISGTV----PQCLNNLTAMTANKSSNAMIRYPLRTD  735 (820)
Q Consensus       665 -~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~~~~~~~~~~~~~~~~  735 (820)
                       ...++|++|+|++|.++.    .++..+...++|++|||++|+++..-    +..+...+.                  
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~------------------  212 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ------------------  212 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSC------------------
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCC------------------
Confidence             246789999999999875    34455577889999999999987532    333333333                  


Q ss_pred             cccCceeEEeeccccccccccCceEEEECCCCcCeec----CC-CcccccCCCEEeCCCCccccCCcccccCC---CC--
Q 045139          736 YYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGE----IP-EVTSLVGLISLNLSKNSLTGPIPSKIGGL---TL--  805 (820)
Q Consensus       736 ~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~----ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l---~~--  805 (820)
                                             |+.|||++|.+++.    ++ .+...++|++|||++|.|+......+..+   ..  
T Consensus       213 -----------------------L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~  269 (372)
T 3un9_A          213 -----------------------LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGG  269 (372)
T ss_dssp             -----------------------CCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------
T ss_pred             -----------------------cCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCcc
Confidence                                   48999999999753    33 44567899999999999986655555433   21  


Q ss_pred             CCeEe--CCCCcCcc
Q 045139          806 LNSLD--LSKNMLMR  818 (820)
Q Consensus       806 L~~Ld--Ls~N~l~g  818 (820)
                      |+.+.  +..|.++.
T Consensus       270 L~~l~~ll~~~~~~~  284 (372)
T 3un9_A          270 ARVVVSLTEGTAVSE  284 (372)
T ss_dssp             CEEECCCC----CHH
T ss_pred             chhhHhhhcCCccCH
Confidence            67777  77776653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.33  E-value=5.3e-11  Score=129.87  Aligned_cols=40  Identities=15%  Similarity=0.283  Sum_probs=21.5

Q ss_pred             ccccCCCCCCEEecCCCcCccccCHHHhhcCCCCCEEeCcCC
Q 045139          396 KSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHN  437 (820)
Q Consensus       396 ~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n  437 (820)
                      .+|.++++|+.+.+.++-.  .++...|.++++|+.+++..+
T Consensus       156 ~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~  195 (394)
T 4fs7_A          156 EAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN  195 (394)
T ss_dssp             TTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT
T ss_pred             hhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC
Confidence            3455666666666654322  133445666666666665544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.33  E-value=3.1e-11  Score=131.16  Aligned_cols=240  Identities=14%  Similarity=0.174  Sum_probs=134.2

Q ss_pred             CccEEECcCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEc
Q 045139          244 SLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQ  323 (820)
Q Consensus       244 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L  323 (820)
                      +|+.+.+..+ ++ .++...+..+ +|+.+.+.+ .++ .|+..+|.+|++|+.+++++|+++.++.....+.+|+.+.+
T Consensus       136 ~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~l  210 (401)
T 4fdw_A          136 QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLL  210 (401)
T ss_dssp             CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEEC
T ss_pred             CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEe
Confidence            4666666544 32 3444444444 677777765 455 56666677777777777777777777665333567777777


Q ss_pred             CCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCC-CcCcCCCcEEecCCCcccEEEccCCcccccccccccCCC
Q 045139          324 DSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLS  402 (820)
Q Consensus       324 ~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~  402 (820)
                      .. .++.+...+|.++.     +|+.+++..+ ++..... +.. .+|+.+.+           .+.++.....+|.+|+
T Consensus       211 p~-~l~~I~~~aF~~~~-----~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-----------p~~i~~I~~~aF~~c~  271 (401)
T 4fdw_A          211 PV-TLKEIGSQAFLKTS-----QLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-----------PNGVTNIASRAFYYCP  271 (401)
T ss_dssp             CT-TCCEECTTTTTTCT-----TCCCEECCTT-CCEECTTTTTT-CCCSEEEE-----------ETTCCEECTTTTTTCT
T ss_pred             CC-chheehhhHhhCCC-----CCCEEecCCC-ccCcccccccc-CCccEEEe-----------CCCccEEChhHhhCCC
Confidence            63 36666666777666     6777777664 3322222 333 45555543           1233334455677777


Q ss_pred             CCCEEecCCCcCc----cccCHHHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCcc
Q 045139          403 QLELLDVASNSLK----GMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFS  478 (820)
Q Consensus       403 ~L~~L~L~~n~l~----~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  478 (820)
                      +|+.+++.+|.+.    ..++...|.++++|+.+++.. .+.......|..+.+|+.+.+..+ +...-..+|.++ +|+
T Consensus       272 ~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~  348 (401)
T 4fdw_A          272 ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIK  348 (401)
T ss_dssp             TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCC
T ss_pred             CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCC
Confidence            7777777766554    124455677777777777763 344444444444555555555332 222233445555 566


Q ss_pred             EEecCCCCccCCCCchhhccCCCcEEEEcCCC
Q 045139          479 ELDVSAAEISDTVPNWFWDLSPNLYYLNLSHN  510 (820)
Q Consensus       479 ~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls~n  510 (820)
                      .+++.+|......+..|..+..+++.+.+..+
T Consensus       349 ~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          349 EVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             EEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred             EEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence            66666655544433444333334445544443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.31  E-value=5.4e-11  Score=129.22  Aligned_cols=194  Identities=9%  Similarity=0.090  Sum_probs=98.8

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      +|+.+++++|+++.....+|. +.+|+.+.+..+ +......+|.++++|+.+++.++ ++..-..+|.+ .+|+.+++ 
T Consensus       181 ~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-  255 (401)
T 4fdw_A          181 NLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-  255 (401)
T ss_dssp             TCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-
T ss_pred             cCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-
Confidence            445555555555433333333 345555555433 44344445555555555555543 33333444444 45555555 


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCccccc-----ccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCc
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFH-----GRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNA  726 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~  726 (820)
                      .+.++ .++...+.++++|+.+++.+|.+.     ..-+.+|.++++|+.+++. +.++..-..+|.+++.|        
T Consensus       256 p~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L--------  325 (401)
T 4fdw_A          256 PNGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKV--------  325 (401)
T ss_dssp             ETTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSC--------
T ss_pred             CCCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCc--------
Confidence            23343 232222224555555555554443     2334455555666666655 23443333445554444        


Q ss_pred             ccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCC-
Q 045139          727 MIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLT-  804 (820)
Q Consensus       727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-  804 (820)
                                                       +.++|..| ++..-+ .|..+ +|+.+++++|.+....+..|.+++ 
T Consensus       326 ---------------------------------~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~  370 (401)
T 4fdw_A          326 ---------------------------------TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPD  370 (401)
T ss_dssp             ---------------------------------CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCT
T ss_pred             ---------------------------------cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCC
Confidence                                             66666544 552223 66666 777777777777665566666663 


Q ss_pred             CCCeEeCCCCc
Q 045139          805 LLNSLDLSKNM  815 (820)
Q Consensus       805 ~L~~LdLs~N~  815 (820)
                      .++.|.+..|.
T Consensus       371 ~l~~l~vp~~~  381 (401)
T 4fdw_A          371 DITVIRVPAES  381 (401)
T ss_dssp             TCCEEEECGGG
T ss_pred             CccEEEeCHHH
Confidence            56677766554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.29  E-value=1.1e-13  Score=149.12  Aligned_cols=181  Identities=17%  Similarity=0.141  Sum_probs=128.0

Q ss_pred             cccEEEccCCccccccCccccc-----CCCCcEEEcCCCeeeecCCCCc-ccccCCcEEeccCCcccccCCcch-----h
Q 045139          572 HFRYLDLSDNLLSGELPNCSKN-----WQKLTVLNLANNKFSGKIPDSM-DFNCMMLSLHLRNNSFIGELPSSV-----K  640 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l-----~  640 (820)
                      .++.|++++|.++......+..     .++|++|+|++|.+++.....+ ..+++|++|+|++|.++......+     .
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~  152 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH  152 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence            7999999999998654444333     3799999999999975433333 346789999999999986544444     2


Q ss_pred             cCCCCCEEECCCCcCccc----cCcchhcCCCCccEEEcCccccccc----CCcccCCCCCCCEEeCcCCCCccccch--
Q 045139          641 SFTQLTVLDLGHNKISGI----IPAWIGDSLPDLVVLSLRSNNFHGR----VPVQVCHLQRIQVLDLSQNNISGTVPQ--  710 (820)
Q Consensus       641 ~l~~L~~L~Ls~N~l~~~----~p~~l~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~--  710 (820)
                      ..++|++|+|++|.+++.    ++..+. ..++|++|+|++|.+...    ++..+...++|+.|+|++|.++..-..  
T Consensus       153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~-~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          153 DQCQITTLRLSNNPLTAAGVAVLMEGLA-GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             TTCCCCEEECCSSCCHHHHHHHHHHHHH-TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             cCCccceeeCCCCCCChHHHHHHHHHHh-cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            468899999999999753    344445 688999999999998753    356677788999999999999854332  


Q ss_pred             --hccccccccccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-Ccccc---cC--C
Q 045139          711 --CLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSL---VG--L  782 (820)
Q Consensus       711 --~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l---~~--L  782 (820)
                        .+...+.                                         |++|||++|.|++.-. .+..+   ..  |
T Consensus       232 ~~~L~~~~~-----------------------------------------L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L  270 (372)
T 3un9_A          232 ARAAREHPS-----------------------------------------LELLHLYFNELSSEGRQVLRDLGGAAEGGA  270 (372)
T ss_dssp             HHHHHHCSS-----------------------------------------CCEEECTTSSCCHHHHHHHHHCC------C
T ss_pred             HHHHHhCCC-----------------------------------------CCEEeccCCCCCHHHHHHHHHHhcCCCccc
Confidence              3333333                                         4899999999975433 33322   22  7


Q ss_pred             CEEe--CCCCcccc
Q 045139          783 ISLN--LSKNSLTG  794 (820)
Q Consensus       783 ~~L~--Ls~N~l~~  794 (820)
                      +.+.  +..|.++.
T Consensus       271 ~~l~~ll~~~~~~~  284 (372)
T 3un9_A          271 RVVVSLTEGTAVSE  284 (372)
T ss_dssp             EEECCCC----CHH
T ss_pred             hhhHhhhcCCccCH
Confidence            7777  77776653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.28  E-value=1.8e-10  Score=125.72  Aligned_cols=326  Identities=12%  Similarity=0.132  Sum_probs=180.7

Q ss_pred             hhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcch-hhhccCCCcEEEcCCCCCCCcchhhhhhccc
Q 045139          263 LFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRALYQDSNNLTDLLPNLFLKLSN  341 (820)
Q Consensus       263 ~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  341 (820)
                      .|..+.+|+.+.+..+ ++ .|+..+|.++++|+.+++..+ ++.|+. .|.++.+|+.+.+..+ +......+|.... 
T Consensus        66 AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~-  140 (394)
T 4fs7_A           66 AFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD-  140 (394)
T ss_dssp             TTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC-
T ss_pred             HhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc-
Confidence            3444447777777643 55 677777888888888888654 666654 4777777777666533 4444455555543 


Q ss_pred             CCcCCccEEEcCCCCCcccCCC-CcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCH
Q 045139          342 CSRDTLEILQLNSNMLRGSLPD-ITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITE  420 (820)
Q Consensus       342 ~~~~~L~~L~L~~n~l~~~~p~-~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  420 (820)
                          .++.........  .... +..+++|+.+.+.++           +.......|.++.+|+.+++..+ ++. ++.
T Consensus       141 ----~~~~~~~~~~~~--i~~~aF~~c~~L~~i~l~~~-----------~~~I~~~~F~~c~~L~~i~l~~~-~~~-I~~  201 (394)
T 4fs7_A          141 ----FKEITIPEGVTV--IGDEAFATCESLEYVSLPDS-----------METLHNGLFSGCGKLKSIKLPRN-LKI-IRD  201 (394)
T ss_dssp             ----CSEEECCTTCCE--ECTTTTTTCTTCCEEECCTT-----------CCEECTTTTTTCTTCCBCCCCTT-CCE-ECT
T ss_pred             ----ccccccCccccc--cchhhhcccCCCcEEecCCc-----------cceeccccccCCCCceEEEcCCC-ceE-eCc
Confidence                222222222211  1112 677788887766432           12233456788889999988776 433 555


Q ss_pred             HHhhcCCCCCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCC
Q 045139          421 AHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSP  500 (820)
Q Consensus       421 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~  500 (820)
                      ..|.++..|+.+.+..+...  +..                        .......|+.+.+.... . .+....+..+.
T Consensus       202 ~~F~~~~~L~~i~~~~~~~~--i~~------------------------~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~  253 (394)
T 4fs7_A          202 YCFAECILLENMEFPNSLYY--LGD------------------------FALSKTGVKNIIIPDSF-T-ELGKSVFYGCT  253 (394)
T ss_dssp             TTTTTCTTCCBCCCCTTCCE--ECT------------------------TTTTTCCCCEEEECTTC-C-EECSSTTTTCS
T ss_pred             hhhccccccceeecCCCceE--eeh------------------------hhcccCCCceEEECCCc-e-ecccccccccc
Confidence            57888888888887665432  111                        12223344444443221 1 12222222335


Q ss_pred             CcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccC
Q 045139          501 NLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSD  580 (820)
Q Consensus       501 ~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~  580 (820)
                      .++.+.+..+... .....+....                                               .++.+....
T Consensus       254 ~l~~~~~~~~~~~-i~~~~F~~~~-----------------------------------------------~l~~~~~~~  285 (394)
T 4fs7_A          254 DLESISIQNNKLR-IGGSLFYNCS-----------------------------------------------GLKKVIYGS  285 (394)
T ss_dssp             SCCEEEECCTTCE-ECSCTTTTCT-----------------------------------------------TCCEEEECS
T ss_pred             cceeEEcCCCcce-eecccccccc-----------------------------------------------ccceeccCc
Confidence            6666665544221 0011011111                                               333333333


Q ss_pred             CccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccC
Q 045139          581 NLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIP  660 (820)
Q Consensus       581 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  660 (820)
                      +.+   ....|..+.+|+.+.+..+ +...-..+|.++.+|+.+++.++ ++..-..+|.+|++|+.+++..+ ++ .|+
T Consensus       286 ~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~  358 (394)
T 4fs7_A          286 VIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIG  358 (394)
T ss_dssp             SEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EEC
T ss_pred             eee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-Eeh
Confidence            322   2235666777777777654 44445566777777777777543 55555667777788888877766 55 444


Q ss_pred             cchhcCCCCccEEEcCcccccccCCcccCCCCCCCEE
Q 045139          661 AWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVL  697 (820)
Q Consensus       661 ~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  697 (820)
                      ...+.++++|+.+++..+ +. .+..+|.++++|+.+
T Consensus       359 ~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          359 ANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             HHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            333336778888877654 22 334567777777654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.17  E-value=5.2e-11  Score=127.68  Aligned_cols=103  Identities=17%  Similarity=0.178  Sum_probs=76.5

Q ss_pred             EEECCCC-cCccccCcchhcCCCCccEEEcCc-ccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccC
Q 045139          647 VLDLGHN-KISGIIPAWIGDSLPDLVVLSLRS-NNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSS  724 (820)
Q Consensus       647 ~L~Ls~N-~l~~~~p~~l~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~  724 (820)
                      .++++++ +++ .+|. +. .+++|+.|+|++ |++++..|..|..+++|+.|+|++|+|++..|..|.+++.|      
T Consensus        12 ~v~~~~~n~l~-~ip~-l~-~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L------   82 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LP-GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL------   82 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SC-SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCC------
T ss_pred             EEEcCCCCCCC-ccCC-CC-CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCC------
Confidence            4677777 777 5777 66 677888888885 88887777778888888888888888887777777777776      


Q ss_pred             CcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCcccc
Q 045139          725 NAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTG  794 (820)
Q Consensus       725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~  794 (820)
                                                         +.|||++|+|++..| .+..++ |+.|+|++|.+..
T Consensus        83 -----------------------------------~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           83 -----------------------------------SRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             -----------------------------------CEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             -----------------------------------CEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence                                               778888888875444 344444 8888888887763

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.10  E-value=1.9e-10  Score=123.24  Aligned_cols=105  Identities=18%  Similarity=0.149  Sum_probs=87.8

Q ss_pred             cEEEccCC-ccccccCcccccCCCCcEEEcCC-CeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          574 RYLDLSDN-LLSGELPNCSKNWQKLTVLNLAN-NKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       574 ~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      ..++++++ +++ .+|. +..+++|++|+|++ |++.+..+..|+.+++|+.|+|++|+|++..|..|.++++|++|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            46788888 888 5777 88899999999996 99998888889999999999999999999888889999999999999


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccc
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHG  682 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~  682 (820)
                      +|+|++ +|..++..++ |+.|+|++|++..
T Consensus        89 ~N~l~~-~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           89 FNALES-LSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SSCCSC-CCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCccce-eCHHHcccCC-ceEEEeeCCCccC
Confidence            999984 5544443444 9999999998874

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.02  E-value=2.2e-08  Score=109.02  Aligned_cols=111  Identities=9%  Similarity=0.038  Sum_probs=62.9

Q ss_pred             CcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCC
Q 045139          588 PNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSL  667 (820)
Q Consensus       588 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l  667 (820)
                      ..+|.+++.|+.+.+..+... ....+|.+++.|+.+.+. +.++.....+|.+|++|+.+++..+ ++ .|....+.++
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C  333 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGC  333 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTC
T ss_pred             cceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCC
Confidence            345666666666666554332 444556666666666664 3344445556666666666666543 44 3333333356


Q ss_pred             CCccEEEcCcccccccCCcccCCCCCCCEEeCcCCC
Q 045139          668 PDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNN  703 (820)
Q Consensus       668 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  703 (820)
                      .+|+.+.+..+ ++..-..+|.++++|+.+++.++.
T Consensus       334 ~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          334 EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            66666666543 443334566666666666666653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.99  E-value=2.1e-08  Score=109.22  Aligned_cols=125  Identities=11%  Similarity=0.103  Sum_probs=87.5

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      .|+.+.+.++..+ ....+|.+++.|+.+.+. +.++.....+|.++.+|+.+++..+ ++.+-..+|.+|++|+.+.+.
T Consensus       266 ~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip  342 (394)
T 4gt6_A          266 YLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP  342 (394)
T ss_dssp             SCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred             cccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence            6777777655433 455678889999999996 4566566778999999999999765 666667889999999999997


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCC
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNI  704 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  704 (820)
                      .+ ++ .|+...+.++++|+.+++.++....   ..+....+|+.+.+..|.+
T Consensus       343 ~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          343 SS-VT-KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TT-CC-BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             cc-cC-EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            65 65 5555444589999999999887542   4567788899888877654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.80  E-value=1.6e-09  Score=115.41  Aligned_cols=182  Identities=15%  Similarity=0.198  Sum_probs=98.2

Q ss_pred             cccCCCCcEEEcCCCeee---------ecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCc
Q 045139          591 SKNWQKLTVLNLANNKFS---------GKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPA  661 (820)
Q Consensus       591 ~~~l~~L~~L~Ls~N~l~---------~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  661 (820)
                      ...+++|+.|.+..+...         +.++..+..+++|+.|++++|.-. .++. + .+++|+.|++..|.+......
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence            444566666666543221         112233455567777777666311 1222 2 266777777777766543333


Q ss_pred             chh-cCCCCccEEEcCc--cccccc-----CCccc--CCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139          662 WIG-DSLPDLVVLSLRS--NNFHGR-----VPVQV--CHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP  731 (820)
Q Consensus       662 ~l~-~~l~~L~~L~L~~--N~l~~~-----~p~~l--~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~  731 (820)
                      .+. ..+++|+.|+|+.  |...+.     +...+  ..+++|+.|++++|.+.+..+..+....               
T Consensus       212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~---------------  276 (362)
T 2ra8_A          212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD---------------  276 (362)
T ss_dssp             HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCS---------------
T ss_pred             HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCc---------------
Confidence            332 1467777777643  221111     11112  2467888888888877654443333211               


Q ss_pred             CccccccCceeEEeeccccccccccCceEEEECCCCcCeec----CC-CcccccCCCEEeCCCCccccCCcccccC-CCC
Q 045139          732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGE----IP-EVTSLVGLISLNLSKNSLTGPIPSKIGG-LTL  805 (820)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~----ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~-l~~  805 (820)
                                             .++.|++|||+.|.+++.    ++ .+..+++|+.|+|++|.++...-..+.. +  
T Consensus       277 -----------------------~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--  331 (362)
T 2ra8_A          277 -----------------------ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--  331 (362)
T ss_dssp             -----------------------SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--
T ss_pred             -----------------------cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--
Confidence                                   123447888888887653    33 4456778888888888776443333332 2  


Q ss_pred             CCeEeCCCCc
Q 045139          806 LNSLDLSKNM  815 (820)
Q Consensus       806 L~~LdLs~N~  815 (820)
                      ...+|++.|+
T Consensus       332 g~~~~~~~~~  341 (362)
T 2ra8_A          332 PMKIDVSDSQ  341 (362)
T ss_dssp             CSEEECCSBC
T ss_pred             CCEEEecCCc
Confidence            3457777664

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.78  E-value=1.8e-09  Score=115.03  Aligned_cols=169  Identities=14%  Similarity=0.143  Sum_probs=112.2

Q ss_pred             CCCcccccCCcEEeccCCccc---------ccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccc
Q 045139          612 PDSMDFNCMMLSLHLRNNSFI---------GELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHG  682 (820)
Q Consensus       612 p~~l~~l~~L~~L~Ls~N~l~---------~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~  682 (820)
                      ..+...+++|+.|.+......         +.++..+..+++|+.|+|++|.-. .++. +  .+++|+.|+|..|.+..
T Consensus       132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~--~~~~L~~L~L~~~~l~~  207 (362)
T 2ra8_A          132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K--PRPNLKSLEIISGGLPD  207 (362)
T ss_dssp             HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C--BCTTCSEEEEECSBCCH
T ss_pred             HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c--cCCCCcEEEEecCCCCh
Confidence            344667889999998765331         234456677889999999887311 2333 3  37899999998888765


Q ss_pred             cCCcccC--CCCCCCEEeCcC--CCCccccchhccccccccccccCCcccccCCccccccCceeEEeeccccccccccCc
Q 045139          683 RVPVQVC--HLQRIQVLDLSQ--NNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGL  758 (820)
Q Consensus       683 ~~p~~l~--~l~~L~~L~Ls~--N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  758 (820)
                      .....+.  .+++|+.|+|+.  |...+..  .+..+..+                                -....++.
T Consensus       208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~~~l~~~--------------------------------l~~~~~p~  253 (362)
T 2ra8_A          208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDG--DMNVFRPL--------------------------------FSKDRFPN  253 (362)
T ss_dssp             HHHHHHHHSBCTTCCEEEEECBCGGGTCCS--CGGGTGGG--------------------------------SCTTTCTT
T ss_pred             HHHHHHHHccCCCCcEEEEeccccccccch--hHHHHHHH--------------------------------HhcCCCCC
Confidence            4333443  688999998863  2211110  01111111                                00013567


Q ss_pred             eEEEECCCCcCeecCC-Cc---ccccCCCEEeCCCCccccC----CcccccCCCCCCeEeCCCCcCcc
Q 045139          759 VKSIDLSSNRLYGEIP-EV---TSLVGLISLNLSKNSLTGP----IPSKIGGLTLLNSLDLSKNMLMR  818 (820)
Q Consensus       759 L~~LdLs~N~l~~~ip-~l---~~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~LdLs~N~l~g  818 (820)
                      |+.|+|++|.+.+..+ .+   ..++.|++|+|+.|.+++.    ++..+..+++|+.||+++|.++.
T Consensus       254 Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          254 LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             CCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             cCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            7999999999986544 33   3588999999999999864    44445668999999999999874

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.54  E-value=6.8e-06  Score=88.70  Aligned_cols=127  Identities=9%  Similarity=0.074  Sum_probs=76.0

Q ss_pred             cCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcC
Q 045139          587 LPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDS  666 (820)
Q Consensus       587 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~  666 (820)
                      ....+..+..|+.+.+..+ +......++..+..|+.+.+..+ ++..-...|.++.+|+.+.+..+ +. .++...+.+
T Consensus       209 ~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~  284 (379)
T 4h09_A          209 TAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSG  284 (379)
T ss_dssp             CTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTT
T ss_pred             eecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-ecccccccc
Confidence            3445566667777776554 33344556666777777777654 44455566677777777777543 33 344433336


Q ss_pred             CCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccc
Q 045139          667 LPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAM  718 (820)
Q Consensus       667 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  718 (820)
                      +++|+.+.+.++.++..-..+|.++.+|+.+++..+ ++..-..+|.++++|
T Consensus       285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  335 (379)
T 4h09_A          285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL  335 (379)
T ss_dssp             CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC
Confidence            677777777766666555566677777777777543 442333456665555

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.46  E-value=1.3e-05  Score=86.36  Aligned_cols=82  Identities=12%  Similarity=0.080  Sum_probs=51.5

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      .++.+.+..+ ++.....+|.+|++|+.+.+.++.++..-..+|.++.+|+.+++..+ ++.+-..+|.+|++|+.+.+.
T Consensus       264 ~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          264 ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             TCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             hhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            3444444322 33233446677777777777777766555667777777777777644 554556677777778777776


Q ss_pred             CCcCc
Q 045139          652 HNKIS  656 (820)
Q Consensus       652 ~N~l~  656 (820)
                      .+ ++
T Consensus       342 ~~-v~  345 (379)
T 4h09_A          342 KS-IT  345 (379)
T ss_dssp             TT-CC
T ss_pred             Cc-cC
Confidence            54 44

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.39  E-value=5.5e-08  Score=93.30  Aligned_cols=116  Identities=16%  Similarity=0.147  Sum_probs=74.2

Q ss_pred             cccccCCCCcEEEcCCC-eeeec----CCCCcccccCCcEEeccCCccccc----CCcchhcCCCCCEEECCCCcCccc-
Q 045139          589 NCSKNWQKLTVLNLANN-KFSGK----IPDSMDFNCMMLSLHLRNNSFIGE----LPSSVKSFTQLTVLDLGHNKISGI-  658 (820)
Q Consensus       589 ~~~~~l~~L~~L~Ls~N-~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~-  658 (820)
                      ..+...+.|++|+|++| .+...    +...+...++|++|+|++|.+...    +...+...++|++|+|++|.|.+. 
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            34555666777777776 65532    233444556677777777776532    334455667788888888887754 


Q ss_pred             ---cCcchhcCCCCccEEEc--Cccccccc----CCcccCCCCCCCEEeCcCCCCc
Q 045139          659 ---IPAWIGDSLPDLVVLSL--RSNNFHGR----VPVQVCHLQRIQVLDLSQNNIS  705 (820)
Q Consensus       659 ---~p~~l~~~l~~L~~L~L--~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~  705 (820)
                         +...+. ..++|++|+|  ++|.+...    +...+...++|+.|+|++|.+.
T Consensus       110 ~~~l~~~L~-~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          110 ILALVEALQ-SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHGGG-GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHH-hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence               234444 4567888888  77777643    3344555678888888888875

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.29  E-value=3.1e-07  Score=88.06  Aligned_cols=119  Identities=16%  Similarity=0.221  Sum_probs=57.3

Q ss_pred             HHHhCCCCCCCEEEcCCC-CCCCCCcccc-ccccCCcCCccEEECcCCCCCCchhhh----hhccCCCCcEEEccCCccc
Q 045139          208 LQVVSQLPSLTELQLRGC-NLPSVIASSS-VSFSNSSRSLAHLDLSLNDVSNSVYYW----LFNSSSSLVYLDLSSNKLQ  281 (820)
Q Consensus       208 ~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~~~~~L~~L~Ls~n~l~~~~~~~----~~~~~~~L~~L~Ls~n~l~  281 (820)
                      ...+...+.|++|+|++| .+.......+ ..+... ++|++|+|++|.+++.....    +.... +|++|+|++|.++
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~-~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~-~L~~L~L~~N~i~  106 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTN-TYVKKFSIVGTRSNDPVAFALAEMLKVNN-TLKSLNVESNFIS  106 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC-CSCCEEECTTSCCCHHHHHHHHHHHHHCS-SCCEEECCSSCCC
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhC-CCcCEEECcCCCCChHHHHHHHHHHHhCC-CcCEEECcCCcCC
Confidence            344455555555555555 4443211100 112222 55555555555555422222    22222 5666666666655


Q ss_pred             CC----CCCCCCCCCCCCCEEEC--CCCCCC-----CcchhhhccCCCcEEEcCCCCCC
Q 045139          282 GP----IPDSAFPNPTSLSYLDL--SNNQLV-----SVPKSFRNLCRLRALYQDSNNLT  329 (820)
Q Consensus       282 g~----ip~~~l~~l~~L~~L~L--s~n~l~-----~ip~~l~~l~~L~~L~L~~n~l~  329 (820)
                      +.    +... +...+.|++|+|  ++|.+.     .+...+...+.|++|++++|.+.
T Consensus       107 ~~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          107 GSGILALVEA-LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHHG-GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHH-HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            21    1222 444555666666  556665     13344555566666666666654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.28  E-value=1.2e-07  Score=95.55  Aligned_cols=64  Identities=25%  Similarity=0.318  Sum_probs=29.9

Q ss_pred             ccCCcEEeccCCcccc--cCCcchhcCCCCCEEECCCCcCccccCcchhcCCC--CccEEEcCcccccccC
Q 045139          618 NCMMLSLHLRNNSFIG--ELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLP--DLVVLSLRSNNFHGRV  684 (820)
Q Consensus       618 l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~--~L~~L~L~~N~l~~~~  684 (820)
                      +++|+.|+|++|+|++  .+|..+..+++|+.|+|++|+|++.  ..+. .+.  +|++|+|++|++.+.+
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~-~l~~l~L~~L~L~~Npl~~~~  236 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELD-KIKGLKLEELWLDGNSLCDTF  236 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGG-GGTTSCCSEEECTTSTTGGGC
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhh-hcccCCcceEEccCCcCcccc
Confidence            4455555555555544  2334444555555555555555532  1111 122  4555555555554433

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.28  E-value=2.8e-07  Score=92.76  Aligned_cols=97  Identities=23%  Similarity=0.295  Sum_probs=71.9

Q ss_pred             EEccCCc---cccccCcccccCCCCcEEEcCCCeeee--cCCCCcccccCCcEEeccCCcccccCCcchhcCC--CCCEE
Q 045139          576 LDLSDNL---LSGELPNCSKNWQKLTVLNLANNKFSG--KIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFT--QLTVL  648 (820)
Q Consensus       576 L~Ls~n~---l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L  648 (820)
                      ++++.|.   +.+.++....++++|+.|+|++|+|++  .+|..++.+++|+.|+|++|+|.+.  ..+..++  +|++|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            5667773   333333334678899999999999987  5567788899999999999999875  3455555  89999


Q ss_pred             ECCCCcCccccCcc------hhcCCCCccEEE
Q 045139          649 DLGHNKISGIIPAW------IGDSLPDLVVLS  674 (820)
Q Consensus       649 ~Ls~N~l~~~~p~~------l~~~l~~L~~L~  674 (820)
                      +|++|++.+.+|..      +...+++|+.||
T Consensus       226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            99999999877631      222577777775

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.97  E-value=3.9e-06  Score=78.14  Aligned_cols=83  Identities=16%  Similarity=0.131  Sum_probs=33.9

Q ss_pred             CCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCC----CCCCeeeCCCcc-CCCCccHHHHhCCCC
Q 045139          141 NIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQL----SFLEYVRLNQVN-LGEATDWLQVVSQLP  215 (820)
Q Consensus       141 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l----~~L~~L~l~~n~-l~~~~~~~~~l~~l~  215 (820)
                      +|++||+++|.++..--..+..+++|++|+|++|..+....+..++.+    ++|++|++++|. +++  .-...+.+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD--~Gl~~L~~~~  139 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD--KGIIALHHFR  139 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH--HHHHHGGGCT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH--HHHHHHhcCC
Confidence            344444444444433333344444444444444433333333333332    234444444432 322  1122334445


Q ss_pred             CCCEEEcCCC
Q 045139          216 SLTELQLRGC  225 (820)
Q Consensus       216 ~L~~L~Ls~n  225 (820)
                      +|++|++++|
T Consensus       140 ~L~~L~L~~c  149 (176)
T 3e4g_A          140 NLKYLFLSDL  149 (176)
T ss_dssp             TCCEEEEESC
T ss_pred             CCCEEECCCC
Confidence            5555555444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.86  E-value=3.4e-06  Score=78.52  Aligned_cols=88  Identities=13%  Similarity=0.164  Sum_probs=68.8

Q ss_pred             CCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCC-CCCCCCccCCCC----CCCcEEeCCCCccccccchhhccCCC
Q 045139          115 QHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAG-FTGRVPYQLGNL----TSLQYLDLSFNFDMLSKKLEWLSQLS  189 (820)
Q Consensus       115 ~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~Ls~n~~~~~~~~~~l~~l~  189 (820)
                      ..|++||++++.++...+ ..+..+++|++|+|++|. ++..--..++.+    ++|++|+|++|..+....+..+.+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            468999999998877533 456889999999999985 665444456654    47999999998767778888888999


Q ss_pred             CCCeeeCCCcc-CCC
Q 045139          190 FLEYVRLNQVN-LGE  203 (820)
Q Consensus       190 ~L~~L~l~~n~-l~~  203 (820)
                      +|++|+++++. +++
T Consensus       140 ~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          140 NLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TCCEEEEESCTTCCC
T ss_pred             CCCEEECCCCCCCCc
Confidence            99999999886 444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.93  E-value=0.0012  Score=58.43  Aligned_cols=57  Identities=25%  Similarity=0.294  Sum_probs=48.4

Q ss_pred             EEEECCCCcCe-ecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCcCcc
Q 045139          760 KSIDLSSNRLY-GEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLMR  818 (820)
Q Consensus       760 ~~LdLs~N~l~-~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~g  818 (820)
                      ..+|.+++.++ ..+| .+.  .+|+.|+|++|+|+...+..|..+++|+.|+|++|++..
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            47899999996 4677 543  479999999999997777788999999999999999864

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.90  E-value=0.00088  Score=63.52  Aligned_cols=59  Identities=19%  Similarity=0.088  Sum_probs=30.0

Q ss_pred             CCcEEEccCCcccCC----CCCCCCCCCCCCCEEECCCCC---CC-----CcchhhhccCCCcEEEcCCCCC
Q 045139          269 SLVYLDLSSNKLQGP----IPDSAFPNPTSLSYLDLSNNQ---LV-----SVPKSFRNLCRLRALYQDSNNL  328 (820)
Q Consensus       269 ~L~~L~Ls~n~l~g~----ip~~~l~~l~~L~~L~Ls~n~---l~-----~ip~~l~~l~~L~~L~L~~n~l  328 (820)
                      .|++|+|++|.|.+.    +-.. +..-+.|++|+|++|.   +.     .+.+.+..-+.|+.|+++.|.+
T Consensus        99 tL~~L~L~~N~Ig~~Ga~ala~a-L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A           99 SLRVLNVESNFLTPELLARLLRS-TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             SCCEEECCSSBCCHHHHHHHHHH-TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             ccCeEecCCCcCCHHHHHHHHHH-HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            555555555555421    1111 3334456666665442   23     2334455666777777766544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.86  E-value=0.00063  Score=64.52  Aligned_cols=17  Identities=6%  Similarity=0.302  Sum_probs=9.2

Q ss_pred             cCCCCCCEEeccCC-CCC
Q 045139          137 GSLKNIRHLDLSNA-GFT  153 (820)
Q Consensus       137 ~~l~~L~~L~Ls~n-~l~  153 (820)
                      .+-+.|++|+|++| .|.
T Consensus        38 ~~n~~L~~L~L~~nn~ig   55 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVS   55 (197)
T ss_dssp             TTCSSCCEEECTTCCSSC
T ss_pred             hcCCCccEEECCCCCCCC
Confidence            33455666666654 443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.16  E-value=0.0068  Score=53.52  Aligned_cols=56  Identities=21%  Similarity=0.287  Sum_probs=28.2

Q ss_pred             EEECCCCcCc-cccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCc
Q 045139          647 VLDLGHNKIS-GIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNIS  705 (820)
Q Consensus       647 ~L~Ls~N~l~-~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  705 (820)
                      .++.+++.++ ..+|..+.   ++|+.|+|++|+|+...+..|..+++|+.|+|++|++.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp---~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP---VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC---TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC---cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4455555543 23443321   24555555555555444444555555566666666553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	820
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.004
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.004
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	8e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.002
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 85.2 bits (209), Expect = 2e-18
 Identities = 75/324 (23%), Positives = 112/324 (34%), Gaps = 34/324 (10%)

Query: 41  CIERERQALLMFKQGLIDEYGHLSSWGNEDDKKDCC--KWRGVSCSN--QTGHVTMLNLQ 96
           C  +++QALL  K+ L +    LSSW       DCC   W GV C    QT  V  L+L 
Sbjct: 3   CNPQDKQALLQIKKDLGNP-TTLSSWLPTT---DCCNRTWLGVLCDTDTQTYRVNNLDL- 57

Query: 97  FRSYMPLRGN--ISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTG 154
             S + L     I SSL  L +LN+L +   +     IP  I  L  + +L +++   +G
Sbjct: 58  --SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG 115

Query: 155 RVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQL 214
            +P  L  + +L  LD S+N    +      S  + +          G   D     S+L
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175

Query: 215 ---------------PSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSV 259
                          P             S       +            + L   S + 
Sbjct: 176 FTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235

Query: 260 YYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLR 319
                  S +L  LDL +N++ G +P         L  L++S N L        NL R  
Sbjct: 236 DLGKVGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFNNLCGEIPQGGNLQRFD 294

Query: 320 ALYQDSNNLTDLLPNLFLKLSNCS 343
                +N      P     L  C+
Sbjct: 295 VSAYANNKCLCGSP-----LPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 67.9 bits (164), Expect = 1e-12
 Identities = 47/272 (17%), Positives = 76/272 (27%), Gaps = 12/272 (4%)

Query: 424 SNLSRLTYLDLSHNSLILNFGSGWVPSF-----ELNIIRLGACKQGPQFPKWLQTQNKFS 478
           +   R+  LDLS  +L        +PS       LN + +G              +    
Sbjct: 47  TQTYRVNNLDLSGLNLP---KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 479 ELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFE 538
                           F      L  L+ S+N  +G LP            I    N   
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP-NLVGITFDGNRIS 162

Query: 539 GPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYL-DLSDNLLSGELPNCSKNWQKL 597
           G IP    + + L     +    L+     +  +           +     +      K 
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 598 TVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISG 657
           T                +  +  +  L LRNN   G LP  +     L  L++  N + G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 658 IIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVC 689
            IP     +L    V +  +N      P+  C
Sbjct: 283 EIPQG--GNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 62.5 bits (150), Expect = 4e-11
 Identities = 39/256 (15%), Positives = 74/256 (28%), Gaps = 4/256 (1%)

Query: 383 LYLNNNRFTGTLT--KSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLI 440
           L L+            S+  L  L  L +   +         ++ L++L YL ++H ++ 
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 441 LNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSP 500
                       L  +           P  + +      +      IS  +P+ +   S 
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174

Query: 501 NLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSG 560
               + +S N  TG     +                             +  +     S 
Sbjct: 175 LFTSMTISRNRLTGK-IPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233

Query: 561 SLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCM 620
           +         ++   LDL +N + G LP      + L  LN++ N   G+IP   +    
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ-R 292

Query: 621 MLSLHLRNNSFIGELP 636
                  NN  +   P
Sbjct: 293 FDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.7 bits (117), Expect = 6e-07
 Identities = 56/261 (21%), Positives = 96/261 (36%), Gaps = 11/261 (4%)

Query: 548 VTSLILFKNMFSGSL---SFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLAN 604
           V +L L            S L  +   +F Y+   +NL  G +P       +L  L + +
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL-VGPIPPAIAKLTQLHYLYITH 110

Query: 605 NKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIG 664
              SG IPD +     +++L    N+  G LP S+ S   L  +    N+ISG IP   G
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 665 DSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSS 724
                   +++  N   G++P    +L    V                ++      + + 
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 725 NAMIRYPLRTDYY--NDHALLVWKRKDSEYRNTLGLVKS---IDLSSNRLYGEIPEVTSL 779
           N++     +       +   L   R        L  +K    +++S N L GEIP+  +L
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL 290

Query: 780 VGLISLNLSKNS-LTG-PIPS 798
                   + N  L G P+P+
Sbjct: 291 QRFDVSAYANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.7 bits (117), Expect = 6e-07
 Identities = 49/248 (19%), Positives = 83/248 (33%), Gaps = 21/248 (8%)

Query: 572 HFRYLDLSDNLLSG--ELPNCSKNWQKLTVLNLANN-KFSGKIPDSMDFNCMMLSLHLRN 628
               LDLS   L     +P+   N   L  L +       G IP ++     +  L++ +
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 629 NSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQV 688
            +  G +P  +     L  LD  +N +SG +P  I  SLP+LV ++   N   G +P   
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSY 169

Query: 689 CHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRK 748
               ++        N              +     S  M+       + +D         
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 749 DSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNS 808
            +     LG V      +                   +L  N + G +P  +  L  L+S
Sbjct: 230 KNSLAFDLGKVGLSKNLNGL-----------------DLRNNRIYGTLPQGLTQLKFLHS 272

Query: 809 LDLSKNML 816
           L++S N L
Sbjct: 273 LNVSFNNL 280

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.0 bits (115), Expect = 1e-06
 Identities = 44/258 (17%), Positives = 80/258 (31%), Gaps = 16/258 (6%)

Query: 265 NSSSSLVYLDLSSNKLQGPIP-DSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQ 323
             +  +  LDLS   L  P P  S+  N   L++L +                 L     
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI------------NNLVGPIP 94

Query: 324 DSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVL 383
            +      L  L++  +N S    + L     ++        L  +L         L  +
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 384 YLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNF 443
             + NR +G +  S G  S+L      S +   +  +   +  +          +++   
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRN--RLTGKIPPTFANLNLAFVDLSRNMLEGD 212

Query: 444 GSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLY 503
            S    S +       A          +      + LD+    I  T+P     L   L+
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL-KFLH 271

Query: 504 YLNLSHNHFTGMLPDLSQ 521
            LN+S N+  G +P    
Sbjct: 272 SLNVSFNNLCGEIPQGGN 289

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 48.6 bits (114), Expect = 2e-06
 Identities = 56/261 (21%), Positives = 89/261 (34%), Gaps = 37/261 (14%)

Query: 212 SQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLV 271
           +Q   +  L L G NLP      S S +N    L  L +   +             + L 
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPS-SLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 272 YLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDL 331
           YL ++   + G IPD      T ++     N    ++P S  +L  L  +  D N ++  
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 332 LPNLFL---KLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLD------- 381
           +P+ +    KL      +   L         +L    +  S   L    ++L        
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 382 -----------------------VLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMI 418
                                   L L NNR  GTL + + QL  L  L+V+ N+L G I
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 419 TEAHLSNLSRLTYLDLSHNSL 439
            +    NL R      ++N  
Sbjct: 285 PQ--GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.8 bits (112), Expect = 3e-06
 Identities = 45/240 (18%), Positives = 89/240 (37%), Gaps = 9/240 (3%)

Query: 479 ELDVSAAEIS--DTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANS 536
            LD+S   +     +P+   +L P L +L +   +        +         + ++  +
Sbjct: 54  NLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN 112

Query: 537 FEGPIPPIPLTVTSLILFKNMFSGSLSFL--CQISDEHFRYLDLSDNLLSGELPNCSKNW 594
             G IP     + +L+     ++     L     S  +   +    N +SG +P+   ++
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172

Query: 595 QKLTV-LNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHN 653
            KL   + ++ N+ +GKIP +     +      RN                  +      
Sbjct: 173 SKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI---HLA 229

Query: 654 KISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLN 713
           K S            +L  L LR+N  +G +P  +  L+ +  L++S NN+ G +PQ  N
Sbjct: 230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 41.7 bits (96), Expect = 3e-04
 Identities = 38/283 (13%), Positives = 74/283 (26%), Gaps = 22/283 (7%)

Query: 314 NLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKEL 373
              R+  L     NL    P +   L+N        +   +N++    P I   + L  L
Sbjct: 48  QTYRVNNLDLSGLNLPKPYP-IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 374 HLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLD 433
           ++    +     +      TL                S +         +S+L  L  + 
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVT-----------LDFSYNALSGTLPPSISSLPNLVGIT 155

Query: 434 LSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPN 493
              N +       +    +L      +  +              + +D+S   +      
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASV 215

Query: 494 WFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLI- 552
            F             ++    +      K        DL  N   G +P     +  L  
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGL---DLRNNRIYGTLPQGLTQLKFLHS 272

Query: 553 --LFKNMFSGSLSFLCQISDEHFRYLDLSDN--LLSGELPNCS 591
             +  N   G +     +    F     ++N  L    LP C+
Sbjct: 273 LNVSFNNLCGEIPQGGNLQ--RFDVSAYANNKCLCGSPLPACT 313

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 78.1 bits (191), Expect = 8e-16
 Identities = 66/375 (17%), Positives = 113/375 (30%), Gaps = 32/375 (8%)

Query: 362 PDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEA 421
            ++T   S  +L    + +  L  +           +  L+ L  ++ ++N L  +    
Sbjct: 32  TNVTDTVSQTDL----DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITPLK 85

Query: 422 HLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELD 481
           +L+ L  +   +     +        +    L   ++             + +   + + 
Sbjct: 86  NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTIS 145

Query: 482 VSAAEISDTVPNWFWDLSPNLYYLNLS--------HNHFTGMLPDLSQKFTAYPPEIDLS 533
             +A    T        +       L+              +              +  +
Sbjct: 146 DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 205

Query: 534 ANSFEGPIPP-IPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSK 592
            N      P  I   +  L L  N      +     S  +   LDL++N +S   P    
Sbjct: 206 NNQISDITPLGILTNLDELSLNGNQLKDIGTLA---SLTNLTDLDLANNQISNLAPLS-- 260

Query: 593 NWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGH 652
              KLT L L  N+ S   P       +    +L  N    E  S + +   LT L L  
Sbjct: 261 GLTKLTELKLGANQISNISP----LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF 316

Query: 653 NKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCL 712
           N IS I P     SL  L  L   +N         + +L  I  L    N IS   P  L
Sbjct: 317 NNISDISPV---SSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--L 369

Query: 713 NNLTAMTA-NKSSNA 726
            NLT +T    +  A
Sbjct: 370 ANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 77.0 bits (188), Expect = 2e-15
 Identities = 62/347 (17%), Positives = 122/347 (35%), Gaps = 40/347 (11%)

Query: 109 SSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQY 168
           + L  +  L    +      G      +  L N+  ++ SN   T   P  L NLT L  
Sbjct: 41  TDLDQVTTLQADRLGIKSIDG------VEYLNNLTQINFSNNQLTDITP--LKNLTKLVD 92

Query: 169 LDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLP 228
           + ++ N       L  L+ L+ L        ++    +   +     S   +        
Sbjct: 93  ILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSG 152

Query: 229 SVIASSSVSFSNSSR-----SLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGP 283
                     +  +      +L  L+      +      +    ++L  L  ++N++   
Sbjct: 153 LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDI 212

Query: 284 IPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCS 343
            P       T+L  L L+ NQL  +  +  +L  L  L   +N +++L P     LS  +
Sbjct: 213 TP---LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-----LSGLT 263

Query: 344 RDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNM-----------LDVLYLNNNRFTG 392
           +  L  L+L +N +    P   L +        + +           L  L L  N  + 
Sbjct: 264 K--LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD 321

Query: 393 TLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
                +  L++L+ L  A+N +  +   + L+NL+ + +L   HN +
Sbjct: 322 IS--PVSSLTKLQRLFFANNKVSDV---SSLANLTNINWLSAGHNQI 363

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 77.0 bits (188), Expect = 2e-15
 Identities = 64/432 (14%), Positives = 121/432 (28%), Gaps = 75/432 (17%)

Query: 383 LYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILN 442
             L     T T++++   L Q+  L      +K +     +  L+ LT ++ S+N L   
Sbjct: 27  TVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTDI 81

Query: 443 FGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNL 502
                +      ++                        +                L  + 
Sbjct: 82  TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 141

Query: 503 YYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSL 562
             ++                         L+  +                      +   
Sbjct: 142 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTL-------------ERLDISSNKVS 188

Query: 563 SFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMML 622
                    +   L  ++N +S   P        L  L+L  N+       ++     + 
Sbjct: 189 DISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD--IGTLASLTNLT 244

Query: 623 SLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHG 682
            L L NN      P S    T+LT L LG N+IS I P      L  L  L L  N    
Sbjct: 245 DLDLANNQISNLAPLS--GLTKLTELKLGANQISNISPLA---GLTALTNLELNENQLE- 298

Query: 683 RVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHAL 742
                + +L+ +  L L  NNIS   P  +++LT +                        
Sbjct: 299 -DISPISNLKNLTYLTLYFNNISDISP--VSSLTKL------------------------ 331

Query: 743 LVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGG 802
                            + +  ++N++   +  + +L  +  L+   N ++   P  +  
Sbjct: 332 -----------------QRLFFANNKVSD-VSSLANLTNINWLSAGHNQISDLTP--LAN 371

Query: 803 LTLLNSLDLSKN 814
           LT +  L L+  
Sbjct: 372 LTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.9 bits (167), Expect = 6e-13
 Identities = 62/318 (19%), Positives = 106/318 (33%), Gaps = 21/318 (6%)

Query: 500 PNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFS 559
            NL  +N S+N  T + P            +D+  N+ +         +T+L       +
Sbjct: 66  NNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 120

Query: 560 GSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNC 619
                    +  +   L+LS N +S           +                 +     
Sbjct: 121 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERL 180

Query: 620 MMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNN 679
            + S  + + S + +L         L  L   +N+IS I P  I  +L     LSL  N 
Sbjct: 181 DISSNKVSDISVLAKLT-------NLESLIATNNQISDITPLGILTNL---DELSLNGNQ 230

Query: 680 FHGRVPVQVCHLQRIQVLDLSQNNISGTVP-QCLNNLTAMTANKSSNAMIRYPLRTDYYN 738
                   +  L  +  LDL+ N IS   P   L  LT +    +  + I          
Sbjct: 231 LKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALT 288

Query: 739 DHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPS 798
           +  L   + +D    + L  +  + L  N +    P V+SL  L  L  + N ++    S
Sbjct: 289 NLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDV--S 345

Query: 799 KIGGLTLLNSLDLSKNML 816
            +  LT +N L    N +
Sbjct: 346 SLANLTNINWLSAGHNQI 363

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 64.6 bits (156), Expect = 1e-11
 Identities = 74/412 (17%), Positives = 130/412 (31%), Gaps = 51/412 (12%)

Query: 268 SSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNN 327
           +  +   L    +   +  +       ++ L      + S+      L  L  +   +N 
Sbjct: 22  AEKMKTVLGKTNVTDTVSQTDLDQ---VTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQ 77

Query: 328 LTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNN 387
           LTD+ P     L N ++  L  + +N+N +    P   L +        + + D+  L N
Sbjct: 78  LTDITP-----LKNLTK--LVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN 130

Query: 388 NRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGW 447
                 L  S   +S +                   S         ++    + N  +  
Sbjct: 131 LTNLNRLELSSNTISDI------------SALSGLTSLQQLSFGNQVTDLKPLANLTTLE 178

Query: 448 VPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNL 507
                 N +   +        + L   N          +ISD  P        NL  L+L
Sbjct: 179 RLDISSNKVSDISVLAKLTNLESLIATNN---------QISDITPLGIL---TNLDELSL 226

Query: 508 SHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQ 567
           + N    +    S        ++DL+ N      P   LT  + +        ++S L  
Sbjct: 227 NGNQLKDIGTLASLT---NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 283

Query: 568 ISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMML-SLHL 626
           ++      L+ +      E  +   N + LT L L  N  S   P S   +   L  L  
Sbjct: 284 LTALTNLELNENQL----EDISPISNLKNLTYLTLYFNNISDISPVS---SLTKLQRLFF 336

Query: 627 RNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSN 678
            NN       SS+ + T +  L  GHN+IS + P     +L  +  L L   
Sbjct: 337 ANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLA---NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 8/84 (9%)

Query: 114 LQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSF 173
           L++L YL + +N+       + + SL  ++ L  +N   +      L NLT++ +L    
Sbjct: 306 LKNLTYLTLYFNNISD---ISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGH 360

Query: 174 NFDMLSKKLEWLSQLSFLEYVRLN 197
           N   +S     L+ L+ +  + LN
Sbjct: 361 N--QISDLTP-LANLTRITQLGLN 381

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 30/199 (15%), Positives = 62/199 (31%), Gaps = 36/199 (18%)

Query: 75  CCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPA 134
                    S+ T    + NL   S    +     +L  L +L  L++  N        A
Sbjct: 201 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN---LA 257

Query: 135 FIGSLKNIRHLDLSNAGFTGRVP--------------------YQLGNLTSLQYLDLSFN 174
            +  L  +  L L     +   P                      + NL +L YL L FN
Sbjct: 258 PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 317

Query: 175 FDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASS 234
                  +  +S L+ L+ +      + +    +  ++ L ++  L      +  +   +
Sbjct: 318 NI---SDISPVSSLTKLQRLFFANNKVSD----VSSLANLTNINWLSAGHNQISDLTPLA 370

Query: 235 SVSFSNSSRSLAHLDLSLN 253
           +++       +  L L+  
Sbjct: 371 NLT------RITQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.1 bits (165), Expect = 6e-13
 Identities = 47/274 (17%), Positives = 87/274 (31%), Gaps = 23/274 (8%)

Query: 267 SSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSV-PKSFRNLCRLRALYQDS 325
                 LDL +NK+   I D  F N  +L  L L NN++  + P +F  L +L  LY   
Sbjct: 30  PPDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 326 NNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYL 385
           N L +L   +   L        EI ++  ++                  L   ++  L  
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFN---------------GLNQMIVVELGT 133

Query: 386 NNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGS 445
           N  + +G    +   + +L  + +A  ++    T         LT L L  N +     +
Sbjct: 134 NPLKSSGIENGAFQGMKKLSYIRIADTNI----TTIPQGLPPSLTELHLDGNKITKVDAA 189

Query: 446 GWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYL 505
                  L  + L            L       EL ++  ++              +  +
Sbjct: 190 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD--HKYIQVV 247

Query: 506 NLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEG 539
            L +N+ + +  +          +   S  S   
Sbjct: 248 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.0 bits (149), Expect = 7e-11
 Identities = 56/324 (17%), Positives = 101/324 (31%), Gaps = 48/324 (14%)

Query: 76  CKWRGVSCSNQ---------TGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYND 126
           C  R V CS+               +L+L       +          L++L+ L +  N 
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPPDTALLDL---QNNKITEIKDGDFKNLKNLHTLILINNK 66

Query: 127 FGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLS 186
                 P     L  +  L LS              L  L+  +          +    +
Sbjct: 67  ISK-ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEIT----KVRKSVFN 121

Query: 187 QLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLA 246
            L+ +  V L    L  +         +  L+ +++   N+ ++             SL 
Sbjct: 122 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-------PQGLPPSLT 174

Query: 247 HLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLV 306
            L L  N ++      L   ++ L  L LS N +      S    P  L  L L+NN+LV
Sbjct: 175 ELHLDGNKITKVDAASLKGLNN-LAKLGLSFNSISAVDNGSLANTPH-LRELHLNNNKLV 232

Query: 307 SVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITL 366
            VP    +   ++ +Y  +NN++ +  N F                            T 
Sbjct: 233 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY----------------------NTK 270

Query: 367 FSSLKELHLYDNMLDVLYLNNNRF 390
            +S   + L+ N +    +  + F
Sbjct: 271 KASYSGVSLFSNPVQYWEIQPSTF 294

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.2 bits (147), Expect = 1e-10
 Identities = 39/253 (15%), Positives = 81/253 (32%), Gaps = 12/253 (4%)

Query: 574 RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIG 633
             LDL +N ++       KN + L  L L NNK S   P +      +  L+L  N    
Sbjct: 34  ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 93

Query: 634 ELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQR 693
                 K+  +L V +    K+   +   +  +   +V L        G        +++
Sbjct: 94  LPEKMPKTLQELRVHENEITKVRKSVFNGL--NQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 694 IQVLDLSQNNISGTVPQCLNNLT----AMTANKSSNAMIRYPLRTDYYNDHALLVWKRKD 749
           +  + ++  NI+        +LT            +A     L        +       D
Sbjct: 152 LSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 211

Query: 750 SEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTG------PIPSKIGGL 803
           +        ++ + L++N+L      +     +  + L  N+++         P      
Sbjct: 212 NGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 271

Query: 804 TLLNSLDLSKNML 816
              + + L  N +
Sbjct: 272 ASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.2 bits (147), Expect = 1e-10
 Identities = 52/281 (18%), Positives = 88/281 (31%), Gaps = 18/281 (6%)

Query: 380 LDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
             +L L NN+ T         L  L  L + +N +  +   A  + L +L  L LS N L
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERLYLSKNQL 91

Query: 440 ILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLS 499
                       EL +      K        L  Q    EL  +  + S      F  + 
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGL-NQMIVVELGTNPLKSSGIENGAFQGM- 149

Query: 500 PNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFK--NM 557
             L Y+ ++  + T +   L    T    E+ L  N            + +L        
Sbjct: 150 KKLSYIRIADTNITTIPQGLPPSLT----ELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 558 FSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDF 617
              ++      +  H R L L++N L    P    + + + V+ L NN  S    +    
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 618 NCMML------SLHLRNN--SFIGELPSSVKSFTQLTVLDL 650
                       + L +N   +    PS+ +       + L
Sbjct: 265 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.2 bits (134), Expect = 5e-09
 Identities = 49/324 (15%), Positives = 91/324 (28%), Gaps = 55/324 (16%)

Query: 497 DLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKN 556
           DL P+   L+L +N  T +     +        + L  N      P     +  L     
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNL-HTLILINNKISKISPGAFAPLVKL----- 81

Query: 557 MFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMD 616
                              L LS N L        K  Q+L V      K    + + + 
Sbjct: 82  -----------------ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL- 123

Query: 617 FNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLR 676
              +++ L        G    + +   +L+ + +    I+ I         P L  L L 
Sbjct: 124 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ----GLPPSLTELHLD 179

Query: 677 SNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDY 736
            N         +  L  +  L LS N+IS      L N   +     +N  +        
Sbjct: 180 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA 239

Query: 737 YNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRL-------YGEIPEVTSLVGLISLNLSK 789
            + +                  ++ + L +N +       +      T       ++L  
Sbjct: 240 DHKY------------------IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281

Query: 790 NSLT--GPIPSKIGGLTLLNSLDL 811
           N +      PS    + +  ++ L
Sbjct: 282 NPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.1 bits (126), Expect = 5e-08
 Identities = 35/181 (19%), Positives = 66/181 (36%), Gaps = 9/181 (4%)

Query: 643 TQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQN 702
               +LDL +NKI+ I       +L +L  L L +N      P     L +++ L LS+N
Sbjct: 31  PDTALLDLQNNKITEIKDGDFK-NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 703 NISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSI 762
            +     +    L  +  +++    +R  +         + +            G  + +
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 763 ------DLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNML 816
                  ++   +   IP+      L  L+L  N +T    + + GL  L  L LS N +
Sbjct: 150 KKLSYIRIADTNI-TTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 817 M 817
            
Sbjct: 208 S 208

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 2e-11
 Identities = 40/251 (15%), Positives = 78/251 (31%), Gaps = 12/251 (4%)

Query: 574 RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIG 633
           + + L  N +S       +  + LT+L L +N  +     +     ++  L L +N+ + 
Sbjct: 35  QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94

Query: 634 EL-PSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQ 692
            + P++     +L  L L    +  + P         L  L L+ N            L 
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL-AALQYLYLQDNALQALPDDTFRDLG 153

Query: 693 RIQVLDLSQNNISGTVPQCLNNLTAMT-------ANKSSNAMIRYPLRTDYYNDHALLVW 745
            +  L L  N IS    +    L ++             +      L             
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 746 KRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTL 805
               +E    L  ++ + L+ N    +         L     S + +   +P ++ G  L
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDL 273

Query: 806 LNSLDLSKNML 816
                L+ N L
Sbjct: 274 ---KRLAANDL 281

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 1e-09
 Identities = 45/300 (15%), Positives = 76/300 (25%), Gaps = 47/300 (15%)

Query: 497 DLSPNLYYLNLSHNHFTGMLPDLSQKFTA--YPPEIDLSANSFEGPIPPIPLTVTSLILF 554
            +      + L  N  + +     +                  +         +  L L 
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 555 KNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDS 614
            N    S+             L L    L    P   +    L  L L +N       D+
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 615 MDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLS 674
                 +  L L  N        + +    L  L L  N+++ + P      L  L+ L 
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF-RDLGRLMTLY 207

Query: 675 LRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRT 734
           L +NN        +  L+ +Q L L+ N                                
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVC---------------------------- 239

Query: 735 DYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTG 794
                         D   R     ++    SS+ +   +P+   L G     L+ N L G
Sbjct: 240 --------------DCRARPLWAWLQKFRGSSSEVPCSLPQ--RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 3e-07
 Identities = 40/278 (14%), Positives = 77/278 (27%), Gaps = 28/278 (10%)

Query: 429 LTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEIS 488
              + L  N +     + +     L I+ L +                  +LD+S     
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 489 DTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTV 548
            +V    +     L+ L+L        L     +  A    + L  N+ +         +
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 549 TSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFS 608
            +L                       +L L  N +S       +    L  L L  N+ +
Sbjct: 153 GNL----------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190

Query: 609 GKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLP 668
              P +      +++L+L  N+       ++     L  L L  N               
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR--ARPLWA 248

Query: 669 DLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISG 706
            L      S+     +P     L    +  L+ N++ G
Sbjct: 249 WLQKFRGSSSEVPCSLPQ---RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 6e-07
 Identities = 36/238 (15%), Positives = 69/238 (28%), Gaps = 5/238 (2%)

Query: 380 LDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
              ++L+ NR +     S      L +L + SN L  +   A              +  L
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 440 ILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLS 499
                + +     L+ + L  C      P   +       L +    +     + F D  
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD-L 152

Query: 500 PNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPI--PLTVTSLILFKNM 557
            NL +L L  N  + +     +   +    + L  N      P     L     +     
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSL-DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 558 FSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSM 615
              +L           +YL L+DN    +       W  L     ++++    +P  +
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQKFRGSSSEVPCSLPQRL 268

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 6e-04
 Identities = 50/271 (18%), Positives = 83/271 (30%), Gaps = 20/271 (7%)

Query: 89  HVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLS 148
               + L       +    ++S    ++L  L +  N        AF G     +     
Sbjct: 33  ASQRIFL---HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 149 NAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWL 208
           NA      P     L  L  L L                L+ L+Y+ L    L    D  
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP-GLFRGLAALQYLYLQDNALQALPDD- 147

Query: 209 QVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSS 268
                L +LT L L G  + SV   +     +    L  L L  N V++   +   +   
Sbjct: 148 -TFRDLGNLTHLFLHGNRISSVPERAFRGLHS----LDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 269 SLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNL 328
             +            +P  A     +L YL L++N  V   ++      L+     S+ +
Sbjct: 203 --LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEV 260

Query: 329 TDLLPNLFLKLSNCSRDTLEILQLNSNMLRG 359
              LP               + +L +N L+G
Sbjct: 261 PCSLPQRLAGRD--------LKRLAANDLQG 283

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (144), Expect = 5e-10
 Identities = 57/462 (12%), Positives = 107/462 (23%), Gaps = 26/462 (5%)

Query: 267 SSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQL-----VSVPKSFRNLCRLRAL 321
           S  +  LD+   +L         P       + L +  L       +  + R    L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 322 YQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLD 381
              SN L D+  +  L+        ++ L L +  L G+                     
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA-------------GCGVLSST 107

Query: 382 VLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLIL 441
           +  L   +        +G      L +   +    +               +   + L  
Sbjct: 108 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRA 167

Query: 442 NFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPN 501
                 +     +I   G                            +            +
Sbjct: 168 KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKAS 227

Query: 502 LYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGS 561
           L  L L  N    +          +P     +   +E  I          +L        
Sbjct: 228 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 287

Query: 562 LSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMM 621
           LS       +    L     L  G                  ++  S    +       +
Sbjct: 288 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI 347

Query: 622 LSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSL---PDLVVLSLRSN 678
            +  L +           +  + L VL L    +S    + +  +L     L  L L +N
Sbjct: 348 SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 407

Query: 679 NFHGRVPVQVCHLQR-----IQVLDLSQNNISGTVPQCLNNL 715
                  +Q+    R     ++ L L     S  +   L  L
Sbjct: 408 CLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 8e-06
 Identities = 60/445 (13%), Positives = 116/445 (26%), Gaps = 20/445 (4%)

Query: 191 LEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDL 250
           ++ + +    L +A  W +++  L     ++L  C L         S    + +LA L+L
Sbjct: 4   IQSLDIQCEELSDA-RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 251 SLNDVSN----SVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLV 306
             N++ +     V   L   S  +  L L +  L G           +L  L   +    
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 307 SVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITL 366
            +  +   L     L          L    L  ++C      +             +   
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 367 FSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNL 426
            + ++ L                 +  +T    +     +   AS     + +       
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 427 SRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAE 486
                  L H S  L     W                  +      +       D  A  
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 487 ISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPD-------LSQKFTAYPPEIDLSANSFEG 539
           + +T+      L                           L +   +     D        
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 540 PIPPIPLTVTSLILFKNMFSG-SLSFLCQ--ISDEHFRYLDLSDNLLSGE-----LPNCS 591
            +      +  L L     S  S S L    +++   R LDLS+N L        + +  
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 592 KNWQKLTVLNLANNKFSGKIPDSMD 616
           +    L  L L +  +S ++ D + 
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQ 447

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 4e-05
 Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 117 LNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGR----VPYQLGNLTSLQYLDLS 172
           +  L+++  +    +    +  L+  + + L + G T      +   L    +L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 173 FN 174
            N
Sbjct: 64  SN 65

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 6e-05
 Identities = 20/177 (11%), Positives = 46/177 (25%), Gaps = 25/177 (14%)

Query: 574 RYLDLSDNLLSGE-LPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFI 632
           + LD+    LS           Q+  V+ L +   +                        
Sbjct: 5   QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEAR--------------------C 44

Query: 633 GELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPD----LVVLSLRSNNFHGRVPVQV 688
            ++ S+++    L  L+L  N++  +    +   L      +  LSL++    G     +
Sbjct: 45  KDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 104

Query: 689 CHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVW 745
               R        +     +      L           + +  L     +  +    
Sbjct: 105 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 161

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 48/450 (10%), Positives = 96/450 (21%), Gaps = 22/450 (4%)

Query: 380 LDVLYLNNNRFTGT-LTKSIGQLSQLELLDVASNSLKGMITEA---HLSNLSRLTYLDLS 435
           +  L +     +     + +  L Q +++ +    L     +     L     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 436 HNSL----ILNFGSGW-VPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDT 490
            N L    +     G   PS ++  + L  C         L +  +            + 
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 491 VPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTS 550
           + +    L                +        +  P    L A      +      +  
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 551 LILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGK 610
             +         S     + +       SDN         SK   +   L        G 
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 611 IPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDL 670
                        L        G          ++        ++S        +    L
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 671 VVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRY 730
               L        + V+ C          S           L        +     + + 
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 731 PLRTDYYNDHALLVWKRKDSEYRNTLGLV-------KSIDLSSNRLYGEIPEV------T 777
             +         L          ++L          + +DLS+N L              
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 778 SLVGLISLNLSKNSLTGPIPSKIGGLTLLN 807
               L  L L     +  +  ++  L    
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.002
 Identities = 17/114 (14%), Positives = 31/114 (27%), Gaps = 5/114 (4%)

Query: 66  WGNEDDKKDCCKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYN 125
                           +       ++   L+      L   +      L+ L   +   +
Sbjct: 323 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 382

Query: 126 DFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLG-----NLTSLQYLDLSFN 174
           D     + A + +  ++R LDLSN         QL          L+ L L   
Sbjct: 383 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 436

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 1e-08
 Identities = 31/201 (15%), Positives = 50/201 (24%), Gaps = 18/201 (8%)

Query: 130 KQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLS 189
             +P  +   K+   L LS           L   T L  L+L        +    L  L 
Sbjct: 23  TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLG 80

Query: 190 FLEYVRLNQVNLGEATDWLQVVSQLPSLTE--LQLRGCNLPSVIASSSVSFSNSSRSLAH 247
            L+       +L      L  ++ L         L    L  +     +    +      
Sbjct: 81  TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140

Query: 248 LDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVS 307
             L              N+ +               +P        +L  L L  N L +
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTE--------------LPAGLLNGLENLDTLLLQENSLYT 186

Query: 308 VPKSFRNLCRLRALYQDSNNL 328
           +PK F     L   +   N  
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 8e-07
 Identities = 35/185 (18%), Positives = 55/185 (29%), Gaps = 4/185 (2%)

Query: 497 DLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKN 556
           DL  +   L+LS N            +T    +++L             L V   +   +
Sbjct: 28  DLPKDTTILHLSENLLYTFSLATLMPYTR-LTQLNLDRAELTKLQVDGTLPVLGTLDLSH 86

Query: 557 MFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMD 616
               S   L   +      LD+S N L+       +   +L  L L  N+     P  + 
Sbjct: 87  NQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 617 FNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLR 676
               +  L L NN+        +     L  L L  N +   IP         L    L 
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG-SHLLPFAFLH 203

Query: 677 SNNFH 681
            N + 
Sbjct: 204 GNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 5e-06
 Identities = 35/199 (17%), Positives = 54/199 (27%), Gaps = 10/199 (5%)

Query: 621 MLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNF 680
            L ++    +    LP  +      T+L L  N +     A +      L  L+L     
Sbjct: 12  HLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLM-PYTRLTQLNLDRAEL 67

Query: 681 HGRVPVQV----CHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDY 736
                         L        S   +  T+P       +     S        L    
Sbjct: 68  TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127

Query: 737 YNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEV-TSLVGLISLNLSKNSLTGP 795
                    K            ++ + L++N L      +   L  L +L L +NSL   
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T 186

Query: 796 IPSKIGGLTLLNSLDLSKN 814
           IP    G  LL    L  N
Sbjct: 187 IPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 30/182 (16%), Positives = 51/182 (28%), Gaps = 11/182 (6%)

Query: 264 FNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPK-SFRNLCRLRALY 322
            +  +S + ++     L   +P      P   + L LS N L +    +     RL  L 
Sbjct: 6   VSKVASHLEVNCDKRNLTA-LPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 323 -----QDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDIT-LFSSLKELHLY 376
                     +   LP L     + ++     L   +      L       +SL    L 
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 377 DNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSH 436
                           TL   +   +        +N+    +    L+ L  L  L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 437 NS 438
           NS
Sbjct: 182 NS 183

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.004
 Identities = 31/212 (14%), Positives = 56/212 (26%), Gaps = 13/212 (6%)

Query: 588 PNCS-KNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLT 646
           P C          +N      +  +P  +  +     LHL  N       +++  +T+LT
Sbjct: 2   PICEVSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLT 58

Query: 647 VLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISG 706
            L+L   ++       +  +LP L  L L  N       +         +        S 
Sbjct: 59  QLNLDRAEL---TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115

Query: 707 TVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYR------NTLGLVK 760
            +                N +   P            +    ++         N L  + 
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175

Query: 761 SIDLSSNRLYGEIPEVTSLVGLISLNLSKNSL 792
           ++ L  N LY           L    L  N  
Sbjct: 176 TLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.004
 Identities = 28/185 (15%), Positives = 56/185 (30%), Gaps = 9/185 (4%)

Query: 638 SVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVL 697
            V        ++     ++ + P  +     D  +L L  N  +      +    R+  L
Sbjct: 5   EVSKVASHLEVNCDKRNLTAL-PPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 698 DLS-QNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTL 756
           +L         V   L  L  +  + +    +    +T        + + R  S     L
Sbjct: 61  NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 757 GLVKSIDLSSNRLYGEIPEVTSLVGLISLN----LSKNSLTGPIPSKIGGLTLLNSLDLS 812
             +  +     +          L+          L+ N+LT      + GL  L++L L 
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 813 KNMLM 817
           +N L 
Sbjct: 181 ENSLY 185

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.6 bits (119), Expect = 4e-07
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 17/102 (16%)

Query: 253 NDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSF 312
            + S++    L +   SL  L++S+NKL   +P      P  L  L  S N L  VP+  
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL----PPRLERLIASFNHLAEVPELP 323

Query: 313 RNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNS 354
           +N   L+ L+ + N L +  P++   + +        L++NS
Sbjct: 324 QN---LKQLHVEYNPLRE-FPDIPESVED--------LRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.3 bits (113), Expect = 2e-06
 Identities = 47/332 (14%), Positives = 95/332 (28%), Gaps = 22/332 (6%)

Query: 268 SSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNN 327
                L+L++  L   +P+     P  L  L  S N L  +P+  ++L  L     +   
Sbjct: 38  RQAHELELNNLGLSS-LPEL----PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA 92

Query: 328 LTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNN 387
           L+DL P L     + ++        NS+ L+    D      L +L      +       
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 388 NRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGW 447
                            +   +       +  E+ ++  + L  L    N   L      
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 448 VPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLY--YL 505
               +       + +       +L    +  +         +             Y    
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 506 NLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFL 565
           +        + P L         E+++S N     +P +P  +  LI   N  +      
Sbjct: 273 SNEIRSLCDLPPSLE--------ELNVSNNKLIE-LPALPPRLERLIASFNHLAEVPELP 323

Query: 566 CQISDEHFRYLDLSDNLLSGELPNCSKNWQKL 597
             +     + L +  N L  E P+  ++ + L
Sbjct: 324 QNL-----KQLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 59/354 (16%), Positives = 113/354 (31%), Gaps = 41/354 (11%)

Query: 292 PTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQ 351
                 L+L+N  L S+P+   +   L +L    N+LT+ LP L     +     ++   
Sbjct: 37  DRQAHELELNNLGLSSLPELPPH---LESLVASCNSLTE-LPEL---PQSLKSLLVDNNN 89

Query: 352 LNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVAS 411
           L +      L +    S+ +   L +          +    +L K       LE +   +
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 412 NSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWL 471
           N L+ +    +L  L+ +   + S   L     S        NI+         Q   +L
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE---ELPELQNLPFL 206

Query: 472 QTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEID 531
            T    + L  +  ++  ++       +       L  +     + +      +  P   
Sbjct: 207 TTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNL 266

Query: 532 LSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCS 591
              N+    I  +     SL                        L++S+N L  ELP   
Sbjct: 267 YYLNASSNEIRSLCDLPPSL----------------------EELNVSNNKLI-ELPAL- 302

Query: 592 KNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQL 645
               +L  L  + N  + ++P+       +  LH+  N  + E P   +S   L
Sbjct: 303 --PPRLERLIASFNHLA-EVPELPQ---NLKQLHVEYNP-LREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 53/340 (15%), Positives = 93/340 (27%), Gaps = 29/340 (8%)

Query: 377 DNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSH 436
           D     L LNN   + +L +    L   E L  + NSL  +       +L  L   + + 
Sbjct: 37  DRQAHELELNNLGLS-SLPELPPHL---ESLVASCNSLTEL--PELPQSLKSLLVDNNNL 90

Query: 437 NSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFW 496
            +L              N +      Q   F K +   N   +         + +     
Sbjct: 91  KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 150

Query: 497 DLSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKN 556
            L       NL          +  +K    P  ++                       + 
Sbjct: 151 QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNIL-------------EEL 197

Query: 557 MFSGSLSFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMD 616
               +L FL  I  ++     L D   S E  N   N+         +  F     +   
Sbjct: 198 PELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFS 257

Query: 617 FNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLR 676
               +       N+   E+ S       L  L++ +NK+       +    P L  L   
Sbjct: 258 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-----LPALPPRLERLIAS 312

Query: 677 SNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLT 716
            N+    VP      Q ++ L +  N +    P    ++ 
Sbjct: 313 FNHL-AEVP---ELPQNLKQLHVEYNPLR-EFPDIPESVE 347

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 15/87 (17%)

Query: 289 FPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLE 348
              P SL  L++SNN+L+ +P       RL  L    N+L ++               L+
Sbjct: 280 CDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPELP---------QNLK 327

Query: 349 ILQLNSNMLRGSLPDITLFSSLKELHL 375
            L +  N LR   PD  +  S+++L +
Sbjct: 328 QLHVEYNPLR-EFPD--IPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 7e-04
 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 18/97 (18%)

Query: 206 DWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFN 265
           +   +    PSL EL +    L        +        L  L  S N ++      +  
Sbjct: 275 EIRSLCDLPPSLEELNVSNNKL--------IELPALPPRLERLIASFNHLAE-----VPE 321

Query: 266 SSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSN 302
              +L  L +  N L+   PD     P S+  L +++
Sbjct: 322 LPQNLKQLHVEYNPLRE-FPDI----PESVEDLRMNS 353

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.2 bits (108), Expect = 5e-06
 Identities = 27/191 (14%), Positives = 60/191 (31%), Gaps = 9/191 (4%)

Query: 622 LSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFH 681
           +  +L+  S    +  +      +  +   ++ I  +        LP++  L L  N   
Sbjct: 27  IKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGI---QYLPNVTKLFLNGNKLT 81

Query: 682 GRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHA 741
                 + +L+ +  L L +N +               + + +       L      +  
Sbjct: 82  D--IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESL 139

Query: 742 LLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIG 801
            L   +       +           +    +I  +  L  L +L LSKN ++      + 
Sbjct: 140 YLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRALA 197

Query: 802 GLTLLNSLDLS 812
           GL  L+ L+L 
Sbjct: 198 GLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 28/170 (16%), Positives = 53/170 (31%), Gaps = 11/170 (6%)

Query: 139 LKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQ 198
           L +I  +  +N+         +  L ++  L L+ N     K L  L  L +L       
Sbjct: 45  LNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKV 102

Query: 199 VNLGEATDWLQVVSQLPS------LTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSL 252
            +L    D  ++ S          +  L          + ++ ++       L  LD   
Sbjct: 103 KDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLS 162

Query: 253 NDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSN 302
            + +           + L  L LS N +       A     +L  L+L +
Sbjct: 163 LEDNQISDIVPLAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 33/214 (15%), Positives = 73/214 (34%), Gaps = 11/214 (5%)

Query: 224 GCNLPSVIASSSVSFSNSS-RSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQG 282
           G    +V       FS+ +       +L    V+++V     NS   +  +  +++ ++ 
Sbjct: 4   GSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNS---IDQIIANNSDIKS 60

Query: 283 PIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNC 342
                  PN   ++ L L+ N+L  +               ++            KL + 
Sbjct: 61  VQGIQYLPN---VTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 117

Query: 343 SRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKS-IGQL 401
           S +   I  +N  +    L  + L ++        + L  L   +           +  L
Sbjct: 118 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL 177

Query: 402 SQLELLDVASNSLKGMITEAHLSNLSRLTYLDLS 435
           ++L+ L ++ N +  +     L+ L  L  L+L 
Sbjct: 178 TKLQNLYLSKNHISDL---RALAGLKNLDVLELF 208

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 2e-05
 Identities = 36/226 (15%), Positives = 67/226 (29%), Gaps = 25/226 (11%)

Query: 130 KQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLS----KKLEWL 185
            +IP+ +   +N   L                    L+ +++S N  +            
Sbjct: 21  TEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 78

Query: 186 SQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSL 245
                      N + +           Q   ++   ++       I S      +   ++
Sbjct: 79  KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI 138

Query: 246 AHLD---------------LSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFP 290
                              L LN       +    + + L  L+LS N     +P+  F 
Sbjct: 139 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFH 198

Query: 291 NPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTDLLPNL 335
             +    LD+S  ++ S+P     NL +LRA    + NL   LP L
Sbjct: 199 GASGPVILDISRTRIHSLPSYGLENLKKLRAR--STYNLKK-LPTL 241

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (98), Expect = 3e-05
 Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 18/121 (14%)

Query: 272 YLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDL 331
            L L+   L              +++LDLS+N+L ++P +   L  L  L    N L ++
Sbjct: 2   VLHLAHKDLTVL---CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 332 LPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFT 391
                      +   L+ L L +N L+     I    S   L        +L L  N   
Sbjct: 59  DG-------VANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLV-------LLNLQGNSLC 103

Query: 392 G 392
            
Sbjct: 104 Q 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 7e-05
 Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 26/124 (20%)

Query: 574 RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIP--------------------- 612
           R L L+   L+  L +       +T L+L++N+     P                     
Sbjct: 1   RVLHLAHKDLT-VLCHLE-QLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 613 DSMDFNCMMLSLHLRNNSFIG-ELPSSVKSFTQLTVLDLGHNKISGI--IPAWIGDSLPD 669
           D +     +  L L NN          + S  +L +L+L  N +     I   + + LP 
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 670 LVVL 673
           +  +
Sbjct: 119 VSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 11/126 (8%)

Query: 407 LDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILNFGSGWVPSFE--LNIIRLGACKQG 464
           L +A   L  +    HL  L  +T+LDLSHN L         P+      +  L A    
Sbjct: 3   LHLAHKDLTVL---CHLEQLLLVTHLDLSHNRL-----RALPPALAALRCLEVLQASDNA 54

Query: 465 PQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHNHFTGMLPDLSQKFT 524
            +    +    +  EL +    +  +         P L  LNL  N        + ++  
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLA 113

Query: 525 AYPPEI 530
              P +
Sbjct: 114 EMLPSV 119

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 8/108 (7%)

Query: 211 VSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSL 270
           + QL  +T L L    L ++  + +        +L  L++     +         +   L
Sbjct: 16  LEQLLLVTHLDLSHNRLRALPPALA--------ALRCLEVLQASDNALENVDGVANLPRL 67

Query: 271 VYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRL 318
             L L +N+LQ         +   L  L+L  N L         L  +
Sbjct: 68  QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 5/108 (4%)

Query: 504 YLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLS 563
            L+L+H   T  L  L Q        +DLS N      P +   +  L + +   +   +
Sbjct: 2   VLHLAHKDLTV-LCHLEQLLLVT--HLDLSHNRLRALPPALA-ALRCLEVLQASDNALEN 57

Query: 564 FLCQISDEHFRYLDLSDNLL-SGELPNCSKNWQKLTVLNLANNKFSGK 610
                +    + L L +N L          +  +L +LNL  N    +
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 12/102 (11%)

Query: 349 ILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLY-----------LNNNRFTGTLTKS 397
           +L L    L   L  +     +  L L  N L  L            L  +         
Sbjct: 2   VLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 398 IGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSL 439
           +  L +L+ L + +N L+       L +  RL  L+L  NSL
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.1 bits (97), Expect = 8e-05
 Identities = 37/175 (21%), Positives = 58/175 (33%), Gaps = 5/175 (2%)

Query: 529 EIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELP 588
            +D +    +     IPL  T L+L  N      S        H   L+L  N L+G  P
Sbjct: 12  TVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP 71

Query: 589 NCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVL 648
           N  +    +  L L  NK              + +L+L +N     +P S +    LT L
Sbjct: 72  NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131

Query: 649 DLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNN 703
           +L  N  +                 SL         P     ++ +Q+ DL  + 
Sbjct: 132 NLASNPFNCNCHLAWFAEWLRK--KSLNGGAARCGAP---SKVRDVQIKDLPHSE 181

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 32/300 (10%), Positives = 79/300 (26%), Gaps = 21/300 (7%)

Query: 394 LTKSIGQLSQLELLDVASNSLKGMITEA---HLSNLSRLTYLDLSHNSLILNFGSGWVPS 450
           +   + +   ++ + ++ N++          ++++   L   + S               
Sbjct: 23  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82

Query: 451 FELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLSHN 510
             L    L   K                E  +        + + +   +  L     +  
Sbjct: 83  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH-NNGLGPQAGAKI 141

Query: 511 HFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISD 570
                   +++K    PP   +           +     +    + + +  +       +
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 201

Query: 571 EHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNS 630
                L          L  C +        N   +  S  +  ++     +  L L +  
Sbjct: 202 GIEHLLLEG-------LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 254

Query: 631 FIGELPSSV------KSFTQLTVLDLGHNKISG----IIPAWIGDSLPDLVVLSLRSNNF 680
                 ++V           L  L L +N+I       +   I + +PDL+ L L  N F
Sbjct: 255 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.2 bits (92), Expect = 7e-04
 Identities = 38/316 (12%), Positives = 84/316 (26%), Gaps = 25/316 (7%)

Query: 140 KNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFN------FDMLSKKLEWLSQLSFLEY 193
           K+++   ++       V   L    S++ + LS N         LS+ +     L   E+
Sbjct: 8   KSLKLDAITTEDEKS-VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 194 VRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLN 253
             +    + +                L       P +        +    +   L   L+
Sbjct: 67  SDIFTGRVKDEIPEAL--------RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 118

Query: 254 DVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFR 313
             +   + +L N+          +  LQ    +    N   L  +    N+L +      
Sbjct: 119 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 178

Query: 314 NLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKEL 373
                      +  +                      +L    L+ +       S+L   
Sbjct: 179 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 238

Query: 374 HLYDNMLDVLYLNNNRFTGTLTKSIGQ------LSQLELLDVASNSLKG----MITEAHL 423
                 L  L LN+   +     ++           L+ L +  N ++      +     
Sbjct: 239 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 298

Query: 424 SNLSRLTYLDLSHNSL 439
             +  L +L+L+ N  
Sbjct: 299 EKMPDLLFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 8/70 (11%), Positives = 21/70 (30%), Gaps = 4/70 (5%)

Query: 261 YWLFNSSSSLVYLDLSSNKLQGP----IPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLC 316
            +    +  L  L L  N+++      +          L +L+L+ N+          + 
Sbjct: 266 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIR 325

Query: 317 RLRALYQDSN 326
            + +      
Sbjct: 326 EVFSTRGRGE 335

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 28/224 (12%), Positives = 64/224 (28%), Gaps = 14/224 (6%)

Query: 213 QLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVY 272
            L +  ++     N+   +  + +        +  L      V+           ++L+ 
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQADLD------GITTLSAFGTGVTT---IEGVQYLNNLIG 67

Query: 273 LDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLL 332
           L+L  N++    P       T L         + ++              Q ++      
Sbjct: 68  LELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 127

Query: 333 PNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTG 392
            +    L         I  L        L       S        + L  L  ++N+ + 
Sbjct: 128 LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD 187

Query: 393 TLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSH 436
                +  L  L  + + +N +  +     L+N S L  + L++
Sbjct: 188 I--SPLASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 34/190 (17%), Positives = 59/190 (31%), Gaps = 12/190 (6%)

Query: 139 LKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQ 198
           L  I  L     G T      +  L +L  L+L  N       L+ L++++ LE      
Sbjct: 40  LDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL 97

Query: 199 VNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNS 258
            N+        + +   + T++                   N   +++ L    N    S
Sbjct: 98  KNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLS 157

Query: 259 VYYW------LFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSF 312
           +            + S L  L    NK+    P     +  +L  + L NNQ+  V    
Sbjct: 158 IGNAQVSDLTPLANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVS-PL 213

Query: 313 RNLCRLRALY 322
            N   L  + 
Sbjct: 214 ANTSNLFIVT 223

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 0.001
 Identities = 31/222 (13%), Positives = 62/222 (27%), Gaps = 19/222 (8%)

Query: 383 LYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHNSLILN 442
           +    +  T T+T++   L  +  L      +  +    +L+NL     L+L  N +   
Sbjct: 24  IAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTIEGVQYLNNL---IGLELKDNQITDL 78

Query: 443 FGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNL 502
                +       +     K           +                  +    L  +L
Sbjct: 79  APLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL 138

Query: 503 YYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSL 562
             +                   A   ++   AN  +         +T+L    N  S  +
Sbjct: 139 NQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSK---------LTTLKADDNKISD-I 188

Query: 563 SFLCQISDEHFRYLDLSDNLLSGELPNCSKNWQKLTVLNLAN 604
           S L  +   +   + L +N +S   P    N   L ++ L N
Sbjct: 189 SPLASLP--NLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 28/240 (11%), Positives = 64/240 (26%), Gaps = 27/240 (11%)

Query: 218 TELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSS 277
             L L G NL   +    +S     + +       + +   +      S   + ++DLS+
Sbjct: 3   QTLDLTGKNLHPDVTGRLLS-----QGVIAFRCPRSFMDQPL--AEHFSPFRVQHMDLSN 55

Query: 278 NKLQGPIPDSAFPNPTSLSYLDLSNNQLV-SVPKSFRNLCRLRALYQDSNNLTDLLPNL- 335
           + ++           + L  L L   +L   +  +      L  L     +         
Sbjct: 56  SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT 115

Query: 336 ------------------FLKLSNCSRDTLEILQLNSNMLRGSLPDITLFSSLKELHLYD 377
                             F +             +    L G   ++        +    
Sbjct: 116 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 175

Query: 378 NMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSRLTYLDLSHN 437
           N++ +   ++        +   QL+ L+ L ++        T   L  +  L  L +   
Sbjct: 176 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 4/82 (4%)

Query: 624 LHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGR 683
           L LR    I  + +   +  Q   +D   N+I  +        L  L  L + +N     
Sbjct: 23  LDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKLDG---FPLLRRLKTLLVNNNRICRI 78

Query: 684 VPVQVCHLQRIQVLDLSQNNIS 705
                  L  +  L L+ N++ 
Sbjct: 79  GEGLDQALPDLTELILTNNSLV 100

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 6/131 (4%)

Query: 574 RYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIG 633
           R LDL    +   + N      +   ++ ++N+        +        L + NN    
Sbjct: 21  RELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKT--LLVNNNRICR 77

Query: 634 ELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFH---GRVPVQVCH 690
                 ++   LT L L +N +  +       SL  L  L +  N            +  
Sbjct: 78  IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYK 137

Query: 691 LQRIQVLDLSQ 701
           + +++VLD  +
Sbjct: 138 VPQVRVLDFQK 148

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 3/64 (4%)

Query: 275 LSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPN 334
           L++  ++     + + N      LDL   ++  +      L +  A+    N +  L   
Sbjct: 3   LTAELIEQA---AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 59

Query: 335 LFLK 338
             L+
Sbjct: 60  PLLR 63

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 36/168 (21%), Positives = 62/168 (36%), Gaps = 24/168 (14%)

Query: 264 FNSSSSLVYLDLSSNKLQGPIP-----DSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRL 318
           F    S+V  +    +L G IP     D+      +  +L LS N +  +  S   +  L
Sbjct: 14  FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENL 72

Query: 319 RALYQ---------DSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPDITL--- 366
           R L           + + + D L  L++  +  +  +     +N  +L  S   IT    
Sbjct: 73  RILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGE 132

Query: 367 ------FSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLD 408
                    L++L L  N L   Y  NN  +    + + +L  L+ LD
Sbjct: 133 IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 22/146 (15%), Positives = 54/146 (36%), Gaps = 5/146 (3%)

Query: 577 DLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELP 636
           +L    +  +L          +   L       +    +    + + L+ R++     L 
Sbjct: 3   ELKPEQVE-QLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRSS-MAATLR 58

Query: 637 SSVKSFTQLTVLDLGHNKISGIIP-AWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQ 695
              ++  +L  L+L +N++  +   + I    P+L +L+L  N       +      +++
Sbjct: 59  IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE 118

Query: 696 VLDLSQNNISGTVPQCLNNLTAMTAN 721
            L L  N++S T       ++A+   
Sbjct: 119 ELWLDGNSLSDTFRDQSTYISAIRER 144

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	820
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.8
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.73
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.44
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.44
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.43
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.38
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.23
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.18
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.15
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.13
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.29
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.27
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.54
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.48
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.73
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.64

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=3.8e-39  Score=340.33  Aligned_cols=291  Identities=28%  Similarity=0.410  Sum_probs=236.1

Q ss_pred             CCHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCcc--cCceEecCCC--CcEEEEEcCCCCCCCCcc--cccccccCC
Q 045139           41 CIERERQALLMFKQGLIDEYGHLSSWGNEDDKKDCCK--WRGVSCSNQT--GHVTMLNLQFRSYMPLRG--NISSSLIGL  114 (820)
Q Consensus        41 ~~~~~~~~l~~~~~~~~~~~~~~~~W~~~~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~~~~l~g--~i~~~l~~l  114 (820)
                      |.++|++||++||+++.+|. .+++|.   .++|||.  |.||+|++.+  +||+.|+|++   +.++|  .+|++++++
T Consensus         3 c~~~e~~aLl~~k~~~~~~~-~l~sW~---~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~---~~l~g~~~lp~~l~~L   75 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG---LNLPKPYPIPSSLANL   75 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEEC---CCCSSCEECCGGGGGC
T ss_pred             CCHHHHHHHHHHHHHCCCCC-cCCCCC---CCCCCCCCcCCCeEEeCCCCcEEEEEEECCC---CCCCCCCCCChHHhcC
Confidence            99999999999999998874 689997   4789994  9999998643  4899999999   78887  588999999


Q ss_pred             CCCCEEECcC-CCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCe
Q 045139          115 QHLNYLNMKY-NDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEY  193 (820)
Q Consensus       115 ~~L~~L~Ls~-n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~  193 (820)
                      ++|++|||++ |++.|. +|+.|+++++|++|+|++|++.+..|..+..+.+|+++++++|.                  
T Consensus        76 ~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~------------------  136 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA------------------  136 (313)
T ss_dssp             TTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE------------------
T ss_pred             ccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhccccccccc------------------
Confidence            9999999987 889886 99999999999999999999998888888899999999998881                  


Q ss_pred             eeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEE
Q 045139          194 VRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYL  273 (820)
Q Consensus       194 L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L  273 (820)
                             +..  .+|..++++++++++++++|.+.+.+|   ..+..+...++.++++.|++++..|..+...  ....+
T Consensus       137 -------~~~--~~p~~l~~l~~L~~l~l~~n~l~~~ip---~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l--~~~~l  202 (313)
T d1ogqa_         137 -------LSG--TLPPSISSLPNLVGITFDGNRISGAIP---DSYGSFSKLFTSMTISRNRLTGKIPPTFANL--NLAFV  202 (313)
T ss_dssp             -------EES--CCCGGGGGCTTCCEEECCSSCCEEECC---GGGGCCCTTCCEEECCSSEEEEECCGGGGGC--CCSEE
T ss_pred             -------ccc--cCchhhccCcccceeeccccccccccc---ccccccccccccccccccccccccccccccc--ccccc
Confidence                   111  244566777777777777777777777   4555553345788888888887777766554  45678


Q ss_pred             EccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcC
Q 045139          274 DLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLN  353 (820)
Q Consensus       274 ~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~  353 (820)
                      +++.+...|.+|.. +..+++++.+++++|.++..++.++.+++|++|++++|++++.+|..|++++     +|++|+|+
T Consensus       203 ~l~~~~~~~~~~~~-~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~-----~L~~L~Ls  276 (313)
T d1ogqa_         203 DLSRNMLEGDASVL-FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK-----FLHSLNVS  276 (313)
T ss_dssp             ECCSSEEEECCGGG-CCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCT-----TCCEEECC
T ss_pred             cccccccccccccc-ccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCC-----CCCEEECc
Confidence            88888888777776 7788888888888888886666788888888888888888888888888887     78888888


Q ss_pred             CCCCcccCCCCcCcCCCcEEecCC
Q 045139          354 SNMLRGSLPDITLFSSLKELHLYD  377 (820)
Q Consensus       354 ~n~l~~~~p~~~~l~~L~~L~l~~  377 (820)
                      +|+++|.+|.++.+++|+.+++++
T Consensus       277 ~N~l~g~iP~~~~L~~L~~l~l~~  300 (313)
T d1ogqa_         277 FNNLCGEIPQGGNLQRFDVSAYAN  300 (313)
T ss_dssp             SSEEEEECCCSTTGGGSCGGGTCS
T ss_pred             CCcccccCCCcccCCCCCHHHhCC
Confidence            888888887766666666554443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=7.5e-30  Score=268.56  Aligned_cols=250  Identities=27%  Similarity=0.445  Sum_probs=186.1

Q ss_pred             CcEEEEcCCCcCCCC--CCcccccccCCCCceeccC-CcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEE
Q 045139          501 NLYYLNLSHNHFTGM--LPDLSQKFTAYPPEIDLSA-NSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLD  577 (820)
Q Consensus       501 ~L~~L~ls~n~l~~~--~p~~~~~~~~l~~~l~ls~-n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~  577 (820)
                      +++.|++++|.+.|.  +|..+..++.+ ++|++++ |.++|.+|..+.+++                      +|++|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L-~~L~Ls~~N~l~g~iP~~i~~L~----------------------~L~~L~  107 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYL-NFLYIGGINNLVGPIPPAIAKLT----------------------QLHYLY  107 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTC-SEEEEEEETTEESCCCGGGGGCT----------------------TCSEEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccc-ccccccccccccccccccccccc----------------------ccchhh
Confidence            355555555555542  44445555555 5555554 555555555444444                      778888


Q ss_pred             ccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCC-CEEECCCCcCc
Q 045139          578 LSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQL-TVLDLGHNKIS  656 (820)
Q Consensus       578 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~  656 (820)
                      +++|++.+..+..+..+..|+.+++++|++.+.+|..++.++.++.+++++|.+.+.+|..+..+..+ +.+++++|+++
T Consensus       108 Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~  187 (313)
T d1ogqa_         108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             EEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred             hccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccc
Confidence            88888887777778888888888888888888888888888888888888888888888888777775 77888888888


Q ss_pred             cccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCcccc
Q 045139          657 GIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDY  736 (820)
Q Consensus       657 ~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~  736 (820)
                      +..|..+. .+ ....++++++...+.+|..+..+++++.+++++|.+++.+| .+..++.+                  
T Consensus       188 ~~~~~~~~-~l-~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L------------------  246 (313)
T d1ogqa_         188 GKIPPTFA-NL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNL------------------  246 (313)
T ss_dssp             EECCGGGG-GC-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTC------------------
T ss_pred             cccccccc-cc-ccccccccccccccccccccccccccccccccccccccccc-cccccccc------------------
Confidence            87777765 34 44468888888888888888888888888888888876554 45555555                  


Q ss_pred             ccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCc
Q 045139          737 YNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNM  815 (820)
Q Consensus       737 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~  815 (820)
                                             +.|||++|+++|.+| .++++++|++|||++|+|+|.+|+ ++++++|+.+++++|+
T Consensus       247 -----------------------~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         247 -----------------------NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             -----------------------CEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             -----------------------ccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence                                   788888888888888 888888888888888888888885 5778888888888887


Q ss_pred             -Ccc
Q 045139          816 -LMR  818 (820)
Q Consensus       816 -l~g  818 (820)
                       ++|
T Consensus       303 ~l~g  306 (313)
T d1ogqa_         303 CLCG  306 (313)
T ss_dssp             EEES
T ss_pred             cccC
Confidence             454

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.8e-26  Score=250.23  Aligned_cols=186  Identities=26%  Similarity=0.408  Sum_probs=147.0

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      +++.+++++|.+++..|  +..+++|++|++++|++++ + +.+..+++|+.|++++|.+++..+  ++.+++|++|+++
T Consensus       198 ~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~  271 (384)
T d2omza2         198 NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG  271 (384)
T ss_dssp             TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred             ccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCCc--ccccccCCEeecc
Confidence            56777788877775543  4566788888888888874 2 367788888888888888886543  7788899999999


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP  731 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~  731 (820)
                      +|++++..+  +. .++.++.+++++|.+++.  ..+..+++++.|++++|++++..|  +..+++|             
T Consensus       272 ~~~l~~~~~--~~-~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L-------------  331 (384)
T d2omza2         272 ANQISNISP--LA-GLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKL-------------  331 (384)
T ss_dssp             SSCCCCCGG--GT-TCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG--GGGCTTC-------------
T ss_pred             CcccCCCCc--cc-cccccccccccccccccc--cccchhcccCeEECCCCCCCCCcc--cccCCCC-------------
Confidence            999885433  33 688899999999988853  357788899999999999986432  5566555             


Q ss_pred             CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCccccCCcccccCCCCCCeEeC
Q 045139          732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDL  811 (820)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdL  811 (820)
                                                  +.|++++|+++ .+|.++.+++|++|++++|++++.+|  ++++++|+.|+|
T Consensus       332 ----------------------------~~L~L~~n~l~-~l~~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L  380 (384)
T d2omza2         332 ----------------------------QRLFFANNKVS-DVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL  380 (384)
T ss_dssp             ----------------------------CEEECCSSCCC-CCGGGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEC
T ss_pred             ----------------------------CEEECCCCCCC-CChhHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeC
Confidence                                        88999999998 56688899999999999999997655  889999999999


Q ss_pred             CCC
Q 045139          812 SKN  814 (820)
Q Consensus       812 s~N  814 (820)
                      ++|
T Consensus       381 ~~N  383 (384)
T d2omza2         381 NDQ  383 (384)
T ss_dssp             CCE
T ss_pred             CCC
Confidence            988

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.1e-25  Score=244.06  Aligned_cols=165  Identities=27%  Similarity=0.355  Sum_probs=116.5

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      +++.|++++|.++. + +.+..+++|+.|++++|++++..+  ++.+++|++|++++|++++..  .+..++.++.++++
T Consensus       220 ~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~  293 (384)
T d2omza2         220 NLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELN  293 (384)
T ss_dssp             TCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECC
T ss_pred             CCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC--cccccccccccccc
Confidence            55666666666653 2 346667777777777777765332  666777788888777777543  36677788888888


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP  731 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~  731 (820)
                      +|++++ ++ .+. .+++++.|++++|++++..  .+..+++|++|++++|++++ +| .+.++++|             
T Consensus       294 ~n~l~~-~~-~~~-~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L-------------  353 (384)
T d2omza2         294 ENQLED-IS-PIS-NLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNI-------------  353 (384)
T ss_dssp             SSCCSC-CG-GGG-GCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTC-------------
T ss_pred             cccccc-cc-ccc-hhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCC-------------
Confidence            888874 33 233 5788888888888887643  36778888888888888873 33 46666665             


Q ss_pred             CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCc
Q 045139          732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNS  791 (820)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~  791 (820)
                                                  +.||+++|++++.+ .+.++++|+.|+|++|.
T Consensus       354 ----------------------------~~L~l~~N~l~~l~-~l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         354 ----------------------------NWLSAGHNQISDLT-PLANLTRITQLGLNDQA  384 (384)
T ss_dssp             ----------------------------CEEECCSSCCCBCG-GGTTCTTCSEEECCCEE
T ss_pred             ----------------------------CEEECCCCcCCCCh-hhccCCCCCEeeCCCCc
Confidence                                        78888888888544 47788888888888874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.9e-23  Score=215.76  Aligned_cols=206  Identities=21%  Similarity=0.218  Sum_probs=187.2

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEecc-CCcccccCCcchhcCCCCCEEEC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLR-NNSFIGELPSSVKSFTQLTVLDL  650 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls-~N~l~~~~p~~l~~l~~L~~L~L  650 (820)
                      .+++|+|++|++++..+..|.++++|++|++++|++.+..+..+..+..++.++.. .|.+....|..+.++++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            78999999999997777789999999999999999999889999999999998875 66677777889999999999999


Q ss_pred             CCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCccccc
Q 045139          651 GHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRY  730 (820)
Q Consensus       651 s~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~  730 (820)
                      ++|.+.+..+..+. ..++|+.+++++|++++..+..|..+++|+.|++++|++++..|..|.+++.|            
T Consensus       113 ~~n~~~~~~~~~~~-~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L------------  179 (284)
T d1ozna_         113 DRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL------------  179 (284)
T ss_dssp             TTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC------------
T ss_pred             CCcccccccccccc-hhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcccccc------------
Confidence            99999865555555 78999999999999997777889999999999999999998778888888887            


Q ss_pred             CCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeE
Q 045139          731 PLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSL  809 (820)
Q Consensus       731 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L  809 (820)
                                                   +.+++++|++++..| .|..+++|++|++++|++.+..|..|+.+++|++|
T Consensus       180 -----------------------------~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L  230 (284)
T d1ozna_         180 -----------------------------DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL  230 (284)
T ss_dssp             -----------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred             -----------------------------chhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEE
Confidence                                         899999999998889 99999999999999999999999999999999999


Q ss_pred             eCCCCcCccc
Q 045139          810 DLSKNMLMRA  819 (820)
Q Consensus       810 dLs~N~l~g~  819 (820)
                      ++++|++.+.
T Consensus       231 ~l~~N~l~C~  240 (284)
T d1ozna_         231 RLNDNPWVCD  240 (284)
T ss_dssp             ECCSSCEECS
T ss_pred             EecCCCCCCC
Confidence            9999999864

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=1.2e-22  Score=212.04  Aligned_cols=197  Identities=21%  Similarity=0.253  Sum_probs=112.3

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCccc--ccCCcchhcCCCCCEEE
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFI--GELPSSVKSFTQLTVLD  649 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~  649 (820)
                      .|++|++++|+++ .+|..+  ...+..|++++|.+.+..+..+.....++.++...|...  ...+..+..+++|++++
T Consensus        80 ~L~~L~l~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~  156 (305)
T d1xkua_          80 KLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR  156 (305)
T ss_dssp             TCCEEECCSSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred             ccCEecccCCccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccc
Confidence            5555555555555 233322  234555666666655444444445555555555555332  23344556666666666


Q ss_pred             CCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccc
Q 045139          650 LGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIR  729 (820)
Q Consensus       650 Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~  729 (820)
                      +++|.++ .+|..   .+++|+.|++++|..++..+..+..++.++.|++++|++.+..|..+.++++|           
T Consensus       157 l~~n~l~-~l~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L-----------  221 (305)
T d1xkua_         157 IADTNIT-TIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL-----------  221 (305)
T ss_dssp             CCSSCCC-SCCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC-----------
T ss_pred             cccCCcc-ccCcc---cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccc-----------
Confidence            6666665 44543   24566666666666666666666666666666666666665555555555555           


Q ss_pred             cCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCccc------ccC
Q 045139          730 YPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSK------IGG  802 (820)
Q Consensus       730 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~------l~~  802 (820)
                                                    ++|+|++|+|+ .+| .+..+++|++|+|++|+|+...+..      +..
T Consensus       222 ------------------------------~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~  270 (305)
T d1xkua_         222 ------------------------------RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK  270 (305)
T ss_dssp             ------------------------------CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTT
T ss_pred             ------------------------------eeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcc
Confidence                                          56666666665 555 6666666666666666666432222      234


Q ss_pred             CCCCCeEeCCCCcCc
Q 045139          803 LTLLNSLDLSKNMLM  817 (820)
Q Consensus       803 l~~L~~LdLs~N~l~  817 (820)
                      +.+|+.|++++|+++
T Consensus       271 ~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         271 KASYSGVSLFSNPVQ  285 (305)
T ss_dssp             SCCCSEEECCSSSSC
T ss_pred             cCCCCEEECCCCcCc
Confidence            556666666666653

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=2.3e-22  Score=210.03  Aligned_cols=266  Identities=23%  Similarity=0.278  Sum_probs=163.0

Q ss_pred             cccCceEecCCCCcEEEEEcCCCCCCCCcccccccccCCCCCCEEECcCCCCCCcccC-ccccCCCCCCEEeccCCCCCC
Q 045139           76 CKWRGVSCSNQTGHVTMLNLQFRSYMPLRGNISSSLIGLQHLNYLNMKYNDFGGKQIP-AFIGSLKNIRHLDLSNAGFTG  154 (820)
Q Consensus        76 c~w~gv~c~~~~~~v~~L~L~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~~p-~~i~~l~~L~~L~Ls~n~l~~  154 (820)
                      |.|++|.|.+               .+++ .+|+.+.  +.+++|+|++|+++.  +| ..|.++++|++|++++|.+..
T Consensus        10 c~~~~~~C~~---------------~~L~-~lP~~l~--~~l~~L~Ls~N~i~~--l~~~~f~~l~~L~~L~l~~n~~~~   69 (305)
T d1xkua_          10 CHLRVVQCSD---------------LGLE-KVPKDLP--PDTALLDLQNNKITE--IKDGDFKNLKNLHTLILINNKISK   69 (305)
T ss_dssp             EETTEEECTT---------------SCCC-SCCCSCC--TTCCEEECCSSCCCC--BCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             ecCCEEEecC---------------CCCC-ccCCCCC--CCCCEEECcCCcCCC--cChhHhhccccccccccccccccc
Confidence            7899999964               2222 3454442  467777777777765  44 357777777777777777776


Q ss_pred             CCCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccc
Q 045139          155 RVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASS  234 (820)
Q Consensus       155 ~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~  234 (820)
                      ..|..|.++++|++|++++|. +. ..+.  .....++.|++..|.+....  ...+.....++.++...|........ 
T Consensus        70 i~~~~f~~l~~L~~L~l~~n~-l~-~l~~--~~~~~l~~L~~~~n~l~~l~--~~~~~~~~~~~~l~~~~n~~~~~~~~-  142 (305)
T d1xkua_          70 ISPGAFAPLVKLERLYLSKNQ-LK-ELPE--KMPKTLQELRVHENEITKVR--KSVFNGLNQMIVVELGTNPLKSSGIE-  142 (305)
T ss_dssp             BCTTTTTTCTTCCEEECCSSC-CS-BCCS--SCCTTCCEEECCSSCCCBBC--HHHHTTCTTCCEEECCSSCCCGGGBC-
T ss_pred             cchhhhhCCCccCEecccCCc-cC-cCcc--chhhhhhhhhccccchhhhh--hhhhhccccccccccccccccccCCC-
Confidence            556677777777777777772 11 1111  12346677777777666532  33455666677777666644322111 


Q ss_pred             cccccCCcCCccEEECcCCCCCCchhhhhhccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcc-hhhh
Q 045139          235 SVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVP-KSFR  313 (820)
Q Consensus       235 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip-~~l~  313 (820)
                      ...+..+ ++|+++++++|.++. +|..+   .++|++|++++|..++..+.. |.+++.+++|++++|.++.++ ..+.
T Consensus       143 ~~~~~~l-~~L~~l~l~~n~l~~-l~~~~---~~~L~~L~l~~n~~~~~~~~~-~~~~~~l~~L~~s~n~l~~~~~~~~~  216 (305)
T d1xkua_         143 NGAFQGM-KKLSYIRIADTNITT-IPQGL---PPSLTELHLDGNKITKVDAAS-LKGLNNLAKLGLSFNSISAVDNGSLA  216 (305)
T ss_dssp             TTGGGGC-TTCCEEECCSSCCCS-CCSSC---CTTCSEEECTTSCCCEECTGG-GTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred             ccccccc-cccCccccccCCccc-cCccc---CCccCEEECCCCcCCCCChhH-hhcccccccccccccccccccccccc
Confidence            1234444 677777777776653 33322   236777777777776544444 777777777777777777553 4567


Q ss_pred             ccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEEEcCCCCCcccCCC-------CcCcCCCcEEecCCCcc
Q 045139          314 NLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEILQLNSNMLRGSLPD-------ITLFSSLKELHLYDNML  380 (820)
Q Consensus       314 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~-------~~~l~~L~~L~l~~n~L  380 (820)
                      ++++|++|++++|+++.. |.+|..++     +|++|++++|+++.....       ....++|+.|++++|.+
T Consensus       217 ~l~~L~~L~L~~N~L~~l-p~~l~~l~-----~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         217 NTPHLRELHLNNNKLVKV-PGGLADHK-----YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             GSTTCCEEECCSSCCSSC-CTTTTTCS-----SCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             ccccceeeeccccccccc-cccccccc-----CCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            777777777777777654 55666666     777777777777643221       22345566555544443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.7e-23  Score=215.99  Aligned_cols=250  Identities=19%  Similarity=0.155  Sum_probs=191.0

Q ss_pred             CcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEc-c
Q 045139          501 NLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDL-S  579 (820)
Q Consensus       501 ~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~L-s  579 (820)
                      ++++|+|++|++++..+..+..++.+ +.+++++|++.+..+.......                      .++.++. .
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L-~~L~ls~n~l~~i~~~~~~~~~----------------------~~~~l~~~~   89 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNL-TILWLHSNVLARIDAAAFTGLA----------------------LLEQLDLSD   89 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTC-CEEECCSSCCCEECTTTTTTCT----------------------TCCEEECCS
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccc-cccccccccccccccccccccc----------------------ccccccccc
Confidence            45666666666655544445555555 5666666655544333332222                      5566655 4


Q ss_pred             CCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCcccc
Q 045139          580 DNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGII  659 (820)
Q Consensus       580 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  659 (820)
                      .+.++...+..|.++++|++|++++|.+....+..+....+|+.+++++|++++..+..|..+++|+.|++++|++++..
T Consensus        90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~  169 (284)
T d1ozna_          90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (284)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc
Confidence            56677667888999999999999999998777788888999999999999999877888999999999999999998666


Q ss_pred             CcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccC
Q 045139          660 PAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYND  739 (820)
Q Consensus       660 p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~  739 (820)
                      +..+. ++++|+.+++++|++++..|..|..+++|++||+++|++.+..|..|.++..|                     
T Consensus       170 ~~~f~-~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L---------------------  227 (284)
T d1ozna_         170 ERAFR-GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL---------------------  227 (284)
T ss_dssp             TTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC---------------------
T ss_pred             hhhhc-cccccchhhhhhccccccChhHhhhhhhccccccccccccccccccccccccc---------------------
Confidence            66666 79999999999999999889999999999999999999998888888888777                     


Q ss_pred             ceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCcCcc
Q 045139          740 HALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLMR  818 (820)
Q Consensus       740 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~g  818 (820)
                                          +.|++++|++...-+...-...++.+....+++....|..+.+   ....+++.+.|+|
T Consensus       228 --------------------~~L~l~~N~l~C~C~~~~l~~~l~~~~~~~~~~~C~~p~~l~g---~~l~~l~~~~l~g  283 (284)
T d1ozna_         228 --------------------QYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG  283 (284)
T ss_dssp             --------------------CEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGTT---CBGGGSCGGGSCC
T ss_pred             --------------------CEEEecCCCCCCCccchHHHHHHHhCcCCCCceEeCCchHHcC---CccccCCHHHCCC
Confidence                                8899999999865442222345667777888888888887654   4567788888877

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.3e-22  Score=207.02  Aligned_cols=198  Identities=23%  Similarity=0.225  Sum_probs=173.2

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      .+.+++.++++++ .+|+.+.  +++++|+|++|+|++..+.+|..+++|++|+|++|+|+.. | .++.+++|++|+++
T Consensus        11 ~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDLS   85 (266)
T ss_dssp             TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEECC
T ss_pred             CCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-cccccccccccccc
Confidence            5667799999998 5777664  5799999999999987778899999999999999999854 3 35789999999999


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP  731 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~  731 (820)
                      +|+++ .++..+. .+++|++|++++|++.+..+..+..+.+++.|++++|.+++..+..+..++.+             
T Consensus        86 ~N~l~-~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l-------------  150 (266)
T d1p9ag_          86 HNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL-------------  150 (266)
T ss_dssp             SSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-------------
T ss_pred             ccccc-ccccccc-cccccccccccccccceeeccccccccccccccccccccceeccccccccccc-------------
Confidence            99998 4566666 79999999999999998888889999999999999999996666677777666             


Q ss_pred             CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccccCCcccccCCCCCCeEe
Q 045139          732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLD  810 (820)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~Ld  810 (820)
                                                  +.+++++|++++..+ .+..+++|++|+|++|+|+ .+|+.+..+++|+.|+
T Consensus       151 ----------------------------~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~  201 (266)
T d1p9ag_         151 ----------------------------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAF  201 (266)
T ss_dssp             ----------------------------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEE
T ss_pred             ----------------------------hhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEE
Confidence                                        889999999997766 7899999999999999999 7898888999999999


Q ss_pred             CCCCcCcc
Q 045139          811 LSKNMLMR  818 (820)
Q Consensus       811 Ls~N~l~g  818 (820)
                      |++|++.+
T Consensus       202 L~~Np~~C  209 (266)
T d1p9ag_         202 LHGNPWLC  209 (266)
T ss_dssp             CCSCCBCC
T ss_pred             ecCCCCCC
Confidence            99999875

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.3e-20  Score=190.04  Aligned_cols=176  Identities=25%  Similarity=0.288  Sum_probs=151.9

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      ++++|+|++|++++..+..|.++++|++|+|++|+|+. +| .++.+++|++|++++|++++ .+..+.++++|++|+++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECC
T ss_pred             CCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccccccccccc-ccccccccccccccccc
Confidence            68899999999987777889999999999999999985 43 35778999999999999985 56688899999999999


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP  731 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~  731 (820)
                      +|++.+..+..+. .+.++++|++++|.+.+..+..+..+++|+.+++++|++++..|..|..+++|             
T Consensus       109 ~~~~~~~~~~~~~-~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L-------------  174 (266)
T d1p9ag_         109 FNRLTSLPLGALR-GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL-------------  174 (266)
T ss_dssp             SSCCCCCCSSTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC-------------
T ss_pred             ccccceeeccccc-cccccccccccccccceeccccccccccchhcccccccccccCcccccccccc-------------
Confidence            9999855555554 78999999999999997777888889999999999999998777778887777             


Q ss_pred             CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC-CcccccCCCEEeCCCCccc
Q 045139          732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP-EVTSLVGLISLNLSKNSLT  793 (820)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~l~~l~~L~~L~Ls~N~l~  793 (820)
                                                  +.|||++|+|+ .+| ++..+++|+.|+|++|.+.
T Consensus       175 ----------------------------~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         175 ----------------------------DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             ----------------------------CEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ----------------------------ceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence                                        88999999998 888 8889999999999999765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.80  E-value=2.7e-17  Score=174.68  Aligned_cols=58  Identities=26%  Similarity=0.348  Sum_probs=31.0

Q ss_pred             cCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCc
Q 045139          619 CMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPV  686 (820)
Q Consensus       619 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~  686 (820)
                      ++|++|++++|+++ .+|..   +++|+.|++++|+|+ .+|..    +++|+.|++++|+++ .+|.
T Consensus       284 ~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~----~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         284 PSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL----PQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             TTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCS-SCCC
T ss_pred             CCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc----cCCCCEEECcCCcCC-CCCc
Confidence            45555555555555 33432   345666666666665 44432    345666666666655 4443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.78  E-value=5.6e-17  Score=172.19  Aligned_cols=311  Identities=27%  Similarity=0.351  Sum_probs=184.1

Q ss_pred             CCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCcc
Q 045139          269 SLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLE  348 (820)
Q Consensus       269 ~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~  348 (820)
                      ++++|||+++.++ .+|+.    +++|++|++++|+|+++|+.   ..+|+.|++++|+++...     .++.    .|+
T Consensus        39 ~l~~LdLs~~~L~-~lp~~----~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~-----~lp~----~L~  101 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL----PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALS-----DLPP----LLE  101 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC----CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC-----SCCT----TCC
T ss_pred             CCCEEEeCCCCCC-CCCCC----CCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhh-----hhcc----ccc
Confidence            7899999999998 78863    57899999999999999875   457899999999887642     2221    688


Q ss_pred             EEEcCCCCCcccCCCCcCcCCCcEEecCCCcccEEEccCCcccccccccccCCCCCCEEecCCCcCccccCHHHhhcCCC
Q 045139          349 ILQLNSNMLRGSLPDITLFSSLKELHLYDNMLDVLYLNNNRFTGTLTKSIGQLSQLELLDVASNSLKGMITEAHLSNLSR  428 (820)
Q Consensus       349 ~L~L~~n~l~~~~p~~~~l~~L~~L~l~~n~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~  428 (820)
                      +|++++|.+. .+|.++.+++|+.|+++++.+          .. .+.   ....+..+.+..+.....   ..+..++.
T Consensus       102 ~L~L~~n~l~-~lp~~~~l~~L~~L~l~~~~~----------~~-~~~---~~~~l~~l~~~~~~~~~~---~~l~~l~~  163 (353)
T d1jl5a_         102 YLGVSNNQLE-KLPELQNSSFLKIIDVDNNSL----------KK-LPD---LPPSLEFIAAGNNQLEEL---PELQNLPF  163 (353)
T ss_dssp             EEECCSSCCS-SCCCCTTCTTCCEEECCSSCC----------SC-CCC---CCTTCCEEECCSSCCSSC---CCCTTCTT
T ss_pred             cccccccccc-cccchhhhccceeeccccccc----------cc-ccc---ccccccchhhcccccccc---cccccccc
Confidence            8888888887 456666777777765554433          21 121   234566666666655432   13556667


Q ss_pred             CCEEeCcCCccccccCCCCcCccccceeecccccCCCCCchhhhcCCCccEEecCCCCccCCCCchhhccCCCcEEEEcC
Q 045139          429 LTYLDLSHNSLILNFGSGWVPSFELNIIRLGACKQGPQFPKWLQTQNKFSELDVSAAEISDTVPNWFWDLSPNLYYLNLS  508 (820)
Q Consensus       429 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~ls  508 (820)
                      ++.+++++|.....                         +.   .....+.+...++.+. .++.. . .++.++.++++
T Consensus       164 l~~L~l~~n~~~~~-------------------------~~---~~~~~~~l~~~~~~~~-~~~~~-~-~l~~L~~l~l~  212 (353)
T d1jl5a_         164 LTAIYADNNSLKKL-------------------------PD---LPLSLESIVAGNNILE-ELPEL-Q-NLPFLTTIYAD  212 (353)
T ss_dssp             CCEEECCSSCCSSC-------------------------CC---CCTTCCEEECCSSCCS-SCCCC-T-TCTTCCEEECC
T ss_pred             ceeccccccccccc-------------------------cc---cccccccccccccccc-ccccc-c-ccccccccccc
Confidence            77777777654311                         00   0111223333333222 22221 1 12455555555


Q ss_pred             CCcCCCCCCcccccccCCCCceeccCCcCcCCCCCCCCcceEEeccCcccccccchhhccccccccEEEccCCccccccC
Q 045139          509 HNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIPPIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGELP  588 (820)
Q Consensus       509 ~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p  588 (820)
                      +|.....                          |....                         ++..+.+.++.+.. .+
T Consensus       213 ~n~~~~~--------------------------~~~~~-------------------------~l~~~~~~~~~~~~-~~  240 (353)
T d1jl5a_         213 NNLLKTL--------------------------PDLPP-------------------------SLEALNVRDNYLTD-LP  240 (353)
T ss_dssp             SSCCSSC--------------------------CSCCT-------------------------TCCEEECCSSCCSC-CC
T ss_pred             ccccccc--------------------------ccccc-------------------------cccccccccccccc-cc
Confidence            5543321                          11111                         34455555555442 12


Q ss_pred             cccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCC
Q 045139          589 NCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLP  668 (820)
Q Consensus       589 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~  668 (820)
                      .   ..+.+...++..+.+.+.. .   -.......++..+.+.+.    ...+++|++|++++|+++ .+|..    ++
T Consensus       241 ~---~~~~l~~~~~~~~~~~~l~-~---l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~----~~  304 (353)
T d1jl5a_         241 E---LPQSLTFLDVSENIFSGLS-E---LPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL----PP  304 (353)
T ss_dssp             C---CCTTCCEEECCSSCCSEES-C---CCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC----CT
T ss_pred             c---ccccccccccccccccccc-c---ccchhcccccccCccccc----cccCCCCCEEECCCCccC-ccccc----cC
Confidence            1   2234555566555544311 1   012344566666666543    233577888888888887 67743    56


Q ss_pred             CccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccc
Q 045139          669 DLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAM  718 (820)
Q Consensus       669 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  718 (820)
                      +|+.|+|++|+++ .+|..   +++|+.|++++|+++ .+|.....+..|
T Consensus       305 ~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~~~L~~L  349 (353)
T d1jl5a_         305 RLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIPESVEDL  349 (353)
T ss_dssp             TCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCCTTCCEE
T ss_pred             CCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCccccccCee
Confidence            7888888888887 56643   457888888888887 566655555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=4.2e-20  Score=204.31  Aligned_cols=134  Identities=17%  Similarity=0.113  Sum_probs=63.5

Q ss_pred             cccEEEccCCcccc-----ccCcccccCCCCcEEEcCCCeeeec----CCCCcccccCCcEEeccCCcccccCCcch---
Q 045139          572 HFRYLDLSDNLLSG-----ELPNCSKNWQKLTVLNLANNKFSGK----IPDSMDFNCMMLSLHLRNNSFIGELPSSV---  639 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l---  639 (820)
                      .++.+++++|.+..     ..+........++.+++++|.+...    ....+...+.++.+++++|.+.......+   
T Consensus       227 ~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~  306 (460)
T d1z7xw1         227 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET  306 (460)
T ss_dssp             TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH
T ss_pred             cccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcc
Confidence            45566666665432     1222333455667777777665432    12233445566666666666543222111   


Q ss_pred             --hcCCCCCEEECCCCcCccccCcchh---cCCCCccEEEcCccccccc----CCcccC-CCCCCCEEeCcCCCCc
Q 045139          640 --KSFTQLTVLDLGHNKISGIIPAWIG---DSLPDLVVLSLRSNNFHGR----VPVQVC-HLQRIQVLDLSQNNIS  705 (820)
Q Consensus       640 --~~l~~L~~L~Ls~N~l~~~~p~~l~---~~l~~L~~L~L~~N~l~~~----~p~~l~-~l~~L~~L~Ls~N~l~  705 (820)
                        .....|+.+++++|.++......+.   ...++|++|+|++|+++..    ++..+. ..+.|++|+|++|+++
T Consensus       307 l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~  382 (460)
T d1z7xw1         307 LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  382 (460)
T ss_dssp             HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             ccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCC
Confidence              1224566666666665533222111   1334556666666555431    222222 2344555555555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.2e-19  Score=200.66  Aligned_cols=113  Identities=14%  Similarity=0.110  Sum_probs=61.3

Q ss_pred             cccEEEccCCcccccc----CcccccCCCCcEEEcCCCeeeec----CCCCcc-cccCCcEEeccCCccccc----CCcc
Q 045139          572 HFRYLDLSDNLLSGEL----PNCSKNWQKLTVLNLANNKFSGK----IPDSMD-FNCMMLSLHLRNNSFIGE----LPSS  638 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~-~l~~L~~L~Ls~N~l~~~----~p~~  638 (820)
                      .++.+++++|.++...    ...+...++|++|+|++|++++.    ++..+. ..+.|++|+|++|.|+..    ++..
T Consensus       313 ~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~  392 (460)
T d1z7xw1         313 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT  392 (460)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             ccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHH
Confidence            3444555554444321    12233445666666666666532    222222 245577777777776532    3445


Q ss_pred             hhcCCCCCEEECCCCcCccccCcch----hcCCCCccEEEcCcccccccC
Q 045139          639 VKSFTQLTVLDLGHNKISGIIPAWI----GDSLPDLVVLSLRSNNFHGRV  684 (820)
Q Consensus       639 l~~l~~L~~L~Ls~N~l~~~~p~~l----~~~l~~L~~L~L~~N~l~~~~  684 (820)
                      +..+++|++|||++|+|++.....+    ......|+.|++.+|.+....
T Consensus       393 l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~  442 (460)
T d1z7xw1         393 LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM  442 (460)
T ss_dssp             HHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred             HhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHH
Confidence            5666777777777777765433222    222346777777777776443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1.7e-17  Score=164.34  Aligned_cols=185  Identities=21%  Similarity=0.346  Sum_probs=152.5

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      +|+.|++.+|.++. ++ .+..+++|++|++++|++++..|  +..+++|+++++++|.++. + ..+..+++|+.++++
T Consensus        42 ~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLT  115 (227)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECT
T ss_pred             CcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc-c-ccccccccccccccc
Confidence            78999999999984 43 58899999999999999986443  8889999999999999874 3 358889999999999


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP  731 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~  731 (820)
                      ++...+..+  +. ..+.++.+.++.+.+....  .+...++|+.|++++|.+++..  .+.++++|             
T Consensus       116 ~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L-------------  175 (227)
T d1h6ua2         116 STQITDVTP--LA-GLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT--PLANLSKL-------------  175 (227)
T ss_dssp             TSCCCCCGG--GT-TCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGTTCTTC-------------
T ss_pred             cccccccch--hc-cccchhhhhchhhhhchhh--hhccccccccccccccccccch--hhcccccc-------------
Confidence            999875433  33 5789999999999887543  4677889999999999887432  25565555             


Q ss_pred             CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCccccCCcccccCCCCCCeEeC
Q 045139          732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDL  811 (820)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdL  811 (820)
                                                  +.|||++|+++ .+|.++.+++|++|+|++|++++ +|. ++++++|+.||+
T Consensus       176 ----------------------------~~L~Ls~n~l~-~l~~l~~l~~L~~L~Ls~N~lt~-i~~-l~~l~~L~~L~l  224 (227)
T d1h6ua2         176 ----------------------------TTLKADDNKIS-DISPLASLPNLIEVHLKNNQISD-VSP-LANTSNLFIVTL  224 (227)
T ss_dssp             ----------------------------CEEECCSSCCC-CCGGGGGCTTCCEEECTTSCCCB-CGG-GTTCTTCCEEEE
T ss_pred             ----------------------------eecccCCCccC-CChhhcCCCCCCEEECcCCcCCC-Ccc-cccCCCCCEEEe
Confidence                                        89999999998 57789999999999999999996 443 899999999999


Q ss_pred             CC
Q 045139          812 SK  813 (820)
Q Consensus       812 s~  813 (820)
                      ++
T Consensus       225 sn  226 (227)
T d1h6ua2         225 TN  226 (227)
T ss_dssp             EE
T ss_pred             eC
Confidence            74

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=3.3e-18  Score=164.44  Aligned_cols=131  Identities=24%  Similarity=0.275  Sum_probs=95.9

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecC-CCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEEC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKI-PDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDL  650 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  650 (820)
                      ..++++.++++++ .+|..+.  +++++|+|++|+|++.+ +..|+.+++|+.|++++|.+.+..+..+..+++|++|+|
T Consensus         9 ~~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_           9 EGTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            3467888888887 5666553  57788888888886533 556677778888888888877777777777777888888


Q ss_pred             CCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCcc
Q 045139          651 GHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISG  706 (820)
Q Consensus       651 s~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  706 (820)
                      ++|++++..|..+. ++++|++|+|++|+|++..|..|..+++|++|+|++|++..
T Consensus        86 s~N~l~~l~~~~F~-~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          86 GENKIKEISNKMFL-GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CSCCCCEECSSSST-TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ccccccccCHHHHh-CCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            88877755455554 67777777777777777767777777777777777777764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=1.5e-17  Score=162.25  Aligned_cols=182  Identities=22%  Similarity=0.340  Sum_probs=146.1

Q ss_pred             EEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCc
Q 045139          575 YLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNK  654 (820)
Q Consensus       575 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  654 (820)
                      ...+..+.+++.++.  ..+.+|++|++++|.+++. + .+..+++|++|++++|++++..  .++.+++|++|++++|+
T Consensus        28 ~~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~  101 (210)
T d1h6ta2          28 KDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENK  101 (210)
T ss_dssp             HHHTTCSCTTSEECH--HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSC
T ss_pred             HHHhCcCccCCccCH--HHhcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccc
Confidence            345666777666553  3567899999999999853 3 4888999999999999998643  36889999999999999


Q ss_pred             CccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCcc
Q 045139          655 ISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRT  734 (820)
Q Consensus       655 l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~  734 (820)
                      ++ .+|. +. .+++|+.|++++|.+.. + ..+..++.++.+++++|.+++  +..+..++.|                
T Consensus       102 i~-~l~~-l~-~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L----------------  158 (210)
T d1h6ta2         102 VK-DLSS-LK-DLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKL----------------  158 (210)
T ss_dssp             CC-CGGG-GT-TCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTC----------------
T ss_pred             cc-cccc-cc-ccccccccccccccccc-c-ccccccccccccccccccccc--cccccccccc----------------
Confidence            98 4553 55 69999999999999873 3 467889999999999999874  2344555555                


Q ss_pred             ccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCC
Q 045139          735 DYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSK  813 (820)
Q Consensus       735 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~  813 (820)
                                               +.+++++|+++ .++.++++++|+.|+|++|+++. +| .|.++++|++|||++
T Consensus       159 -------------------------~~l~l~~n~l~-~i~~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         159 -------------------------DTLSLEDNQIS-DIVPLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -------------------------SEEECCSSCCC-CCGGGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             -------------------------ccccccccccc-ccccccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence                                     89999999998 46678899999999999999984 66 589999999999974

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2e-17  Score=165.62  Aligned_cols=201  Identities=16%  Similarity=0.136  Sum_probs=157.8

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecC-CCCcccccCCcEEecc-CCcccccCCcchhcCCCCCEEE
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKI-PDSMDFNCMMLSLHLR-NNSFIGELPSSVKSFTQLTVLD  649 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls-~N~l~~~~p~~l~~l~~L~~L~  649 (820)
                      ++++|++++|+++...+..|.++++|++|++++|.+.+.+ +.+|..++.++++.+. .|.+....+..|.++++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            7889999999998666668999999999999999987654 5578899999999876 4678888888899999999999


Q ss_pred             CCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCC-CCCEEeCcCCCCccccchhccccccccccccCCccc
Q 045139          650 LGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQ-RIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMI  728 (820)
Q Consensus       650 Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~  728 (820)
                      +++|++....+......+..+..+...++.+....+..+..++ .++.|++++|+++. ++....+...+          
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~-i~~~~~~~~~l----------  178 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNCAFNGTQL----------  178 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTTTTTCCE----------
T ss_pred             cchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc-cccccccchhh----------
Confidence            9999997443333323567777788888888876667777665 78899999999984 44433333333          


Q ss_pred             ccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC--CcccccCCCEEeCCCCccccCCcccccCCCCC
Q 045139          729 RYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP--EVTSLVGLISLNLSKNSLTGPIPSKIGGLTLL  806 (820)
Q Consensus       729 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip--~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L  806 (820)
                                                    .+.+++++|+++ .+|  .+..+++|++|++++|+++...+..|.++++|
T Consensus       179 ------------------------------~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L  227 (242)
T d1xwdc1         179 ------------------------------DELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL  227 (242)
T ss_dssp             ------------------------------EEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEE
T ss_pred             ------------------------------hccccccccccc-cccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCccc
Confidence                                          155678889998 666  58899999999999999996656678888888


Q ss_pred             CeEeCCCC
Q 045139          807 NSLDLSKN  814 (820)
Q Consensus       807 ~~LdLs~N  814 (820)
                      +.+++.+.
T Consensus       228 ~~l~~~~l  235 (242)
T d1xwdc1         228 RARSTYNL  235 (242)
T ss_dssp             ESSSEESS
T ss_pred             ccCcCCCC
Confidence            88877653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=8.3e-17  Score=159.20  Aligned_cols=189  Identities=24%  Similarity=0.329  Sum_probs=112.4

Q ss_pred             ccCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhhccCCCC
Q 045139          111 LIGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSF  190 (820)
Q Consensus       111 l~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~  190 (820)
                      +..+.+|++|++.+|+++.  ++ .++++++|++|++++|.+++..|  +.++++|+++++++|.   ...++.+.    
T Consensus        37 ~~~l~~L~~L~l~~~~i~~--l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~---~~~i~~l~----  104 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP---LKNVSAIA----  104 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC---CSCCGGGT----
T ss_pred             HHHcCCcCEEECCCCCCCc--ch-hHhcCCCCcEeecCCceeecccc--cccccccccccccccc---cccccccc----
Confidence            4556677777777777754  43 46777777777777777764333  6677777777776661   12223344    


Q ss_pred             CCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhhhccCCCC
Q 045139          191 LEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWLFNSSSSL  270 (820)
Q Consensus       191 L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L  270 (820)
                                            ++++|+.++++++...+..+     +... +.++.+.++.+.+....+  +.... +|
T Consensus       105 ----------------------~l~~L~~l~l~~~~~~~~~~-----~~~~-~~~~~l~~~~~~~~~~~~--~~~~~-~L  153 (227)
T d1h6ua2         105 ----------------------GLQSIKTLDLTSTQITDVTP-----LAGL-SNLQVLYLDLNQITNISP--LAGLT-NL  153 (227)
T ss_dssp             ----------------------TCTTCCEEECTTSCCCCCGG-----GTTC-TTCCEEECCSSCCCCCGG--GGGCT-TC
T ss_pred             ----------------------ccccccccccccccccccch-----hccc-cchhhhhchhhhhchhhh--hcccc-cc
Confidence                                  44455555555444443321     2222 555556665555543322  22222 67


Q ss_pred             cEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchhhhccCCCcEEEcCCCCCCCcchhhhhhcccCCcCCccEE
Q 045139          271 VYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKSFRNLCRLRALYQDSNNLTDLLPNLFLKLSNCSRDTLEIL  350 (820)
Q Consensus       271 ~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~~L~~L  350 (820)
                      ++|++++|.+++ ++.  ++++++|++|++++|+++.++. +.++++|++|++++|++++..|  +.+++     +|+.|
T Consensus       154 ~~L~l~~n~~~~-~~~--l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~~--l~~l~-----~L~~L  222 (227)
T d1h6ua2         154 QYLSIGNAQVSD-LTP--LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTS-----NLFIV  222 (227)
T ss_dssp             CEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG--GTTCT-----TCCEE
T ss_pred             cccccccccccc-chh--hcccccceecccCCCccCCChh-hcCCCCCCEEECcCCcCCCCcc--cccCC-----CCCEE
Confidence            777777776652 222  6667777777777777776654 6677777777777777776543  55665     67777


Q ss_pred             EcC
Q 045139          351 QLN  353 (820)
Q Consensus       351 ~L~  353 (820)
                      +++
T Consensus       223 ~ls  225 (227)
T d1h6ua2         223 TLT  225 (227)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=5.8e-17  Score=156.54  Aligned_cols=178  Identities=24%  Similarity=0.387  Sum_probs=143.1

Q ss_pred             EEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCc
Q 045139          575 YLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNK  654 (820)
Q Consensus       575 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  654 (820)
                      ...++.+.+++.++  ...++++++|++++|.+.. + +.++.+++|++|++++|++++..|  ++++++|++|++++|.
T Consensus        22 ~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~   95 (199)
T d2omxa2          22 KTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ   95 (199)
T ss_dssp             HHHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             HHHhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCcccccccccccc
Confidence            44567777776544  3467889999999999884 3 358889999999999999986543  8899999999999999


Q ss_pred             CccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCcc
Q 045139          655 ISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRT  734 (820)
Q Consensus       655 l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~  734 (820)
                      +. .++. +. +++.|+.|++++|.+...  ..+..+++|+.|++++|++.. +| .+..++.+                
T Consensus        96 ~~-~~~~-l~-~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L----------------  152 (199)
T d2omxa2          96 IA-DITP-LA-NLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-IS-ALSGLTSL----------------  152 (199)
T ss_dssp             CC-CCGG-GT-TCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTC----------------
T ss_pred             cc-cccc-cc-cccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-cc-cccccccc----------------
Confidence            87 4553 55 799999999999998754  347889999999999999863 33 45565555                


Q ss_pred             ccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCCCccccCCcccccCCCCCCeE
Q 045139          735 DYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSL  809 (820)
Q Consensus       735 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L  809 (820)
                                               +.|++++|+++ .++.++.+++|++|++++|++++ +| .++++++|++|
T Consensus       153 -------------------------~~L~l~~n~l~-~l~~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         153 -------------------------QQLNFSSNQVT-DLKPLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             -------------------------SEEECCSSCCC-CCGGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             -------------------------ccccccccccc-CCccccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence                                     88999999998 56678899999999999999985 54 58889999876

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.7e-17  Score=163.67  Aligned_cols=201  Identities=17%  Similarity=0.174  Sum_probs=111.0

Q ss_pred             cccccccCCCCCCEEECcCCCCCCcccCc-cccCCCCCCEEeccCCCCCCCCC-ccCCCCCCCcEEeCCCCccccccchh
Q 045139          106 NISSSLIGLQHLNYLNMKYNDFGGKQIPA-FIGSLKNIRHLDLSNAGFTGRVP-YQLGNLTSLQYLDLSFNFDMLSKKLE  183 (820)
Q Consensus       106 ~i~~~l~~l~~L~~L~Ls~n~l~~~~~p~-~i~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~~~~~~~~~  183 (820)
                      .+|+.+.  +++++||+++|+++.  +|. .|.++++|++|++++|.+...+| ..+..+++++++++..+.......+.
T Consensus        22 ~iP~~l~--~~l~~L~Ls~n~i~~--l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~   97 (242)
T d1xwdc1          22 EIPSDLP--RNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE   97 (242)
T ss_dssp             SCCSCSC--SCCSEEEEESCCCCE--ECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTT
T ss_pred             CcCCCCC--CCCCEEECcCCcCCc--cChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccc
Confidence            4555443  578999999999976  554 68899999999999999886554 45788999999988654233344444


Q ss_pred             hccCCCCCCeeeCCCccCCCCccHHHHhCCCCCCCEEEcCCCCCCCCCccccccccCCcCCccEEECcCCCCCCchhhhh
Q 045139          184 WLSQLSFLEYVRLNQVNLGEATDWLQVVSQLPSLTELQLRGCNLPSVIASSSVSFSNSSRSLAHLDLSLNDVSNSVYYWL  263 (820)
Q Consensus       184 ~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~  263 (820)
                      .+.++++|++++++++.+..... ...+..++.+..+...++.+....+                            ..+
T Consensus        98 ~~~~l~~L~~l~l~~~~l~~~~~-~~~~~~l~~l~~~~~~n~~l~~i~~----------------------------~~~  148 (242)
T d1xwdc1          98 AFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKVLLDIQDNINIHTIER----------------------------NSF  148 (242)
T ss_dssp             SEECCTTCCEEEEESCCCCSCCC-CTTTCBSSCEEEEEESCTTCCEECT----------------------------TSS
T ss_pred             cccccccccccccchhhhccccc-ccccccccccccccccccccccccc----------------------------ccc
Confidence            45556666666666555543211 1122223333333333333333222                            222


Q ss_pred             hccCCCCcEEEccCCcccCCCCCCCCCCCCCCCEEECCCCCCCCcchh-hhccCCCcEEEcCCCCCCCcchhhhhhcc
Q 045139          264 FNSSSSLVYLDLSSNKLQGPIPDSAFPNPTSLSYLDLSNNQLVSVPKS-FRNLCRLRALYQDSNNLTDLLPNLFLKLS  340 (820)
Q Consensus       264 ~~~~~~L~~L~Ls~n~l~g~ip~~~l~~l~~L~~L~Ls~n~l~~ip~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~  340 (820)
                      ......++.|++++|+++ .++..++......+.+++++|+++++|.. |.++++|++|++++|+++...+..|.+++
T Consensus       149 ~~~~~~l~~L~l~~n~l~-~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~  225 (242)
T d1xwdc1         149 VGLSFESVILWLNKNGIQ-EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK  225 (242)
T ss_dssp             TTSBSSCEEEECCSSCCC-EECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCC
T ss_pred             ccccccceeeeccccccc-ccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCc
Confidence            222224555555555555 44444232222222233455555555443 45555666666666655554444444444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=3.8e-17  Score=156.88  Aligned_cols=174  Identities=20%  Similarity=0.228  Sum_probs=147.0

Q ss_pred             CcEEEcCCCeeeecCCCCcccccCCcEEeccCCccccc-CCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEc
Q 045139          597 LTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGE-LPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSL  675 (820)
Q Consensus       597 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L  675 (820)
                      .+.++.++++++ .+|..+.  +++++|+|++|+|++. .+..|.++++|++|++++|++.+..+..+. .+++|++|+|
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~-~~~~L~~L~L   85 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE-GASHIQELQL   85 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEEC
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccc-cccccceeee
Confidence            468999999998 6787664  6899999999999864 467789999999999999999977777776 7999999999


Q ss_pred             CcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccCCccccccCceeEEeeccccccccc
Q 045139          676 RSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNT  755 (820)
Q Consensus       676 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  755 (820)
                      ++|++++..|..|.++++|++|+|++|+|++..|..|.+++.|                                     
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L-------------------------------------  128 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL-------------------------------------  128 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTC-------------------------------------
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccc-------------------------------------
Confidence            9999998888899999999999999999998778888888777                                     


Q ss_pred             cCceEEEECCCCcCeecCCCcccccCCCEEeCCCCccccCCcccccCCCCCCeEeCCCCcCcc
Q 045139          756 LGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSKNSLTGPIPSKIGGLTLLNSLDLSKNMLMR  818 (820)
Q Consensus       756 l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~g  818 (820)
                          ++|+|++|.+....+...-...++.+.+..|.++...|..   +..++.+||+.|.|.+
T Consensus       129 ----~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p~~---l~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         129 ----TSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKC  184 (192)
T ss_dssp             ----CEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTT---TTTSBGGGSCTTTCCC
T ss_pred             ----ccccccccccccccchHHHhhhhhhhcccCCCeEeCCChh---hcCCEeeecCHhhCcC
Confidence                8999999999855442222345777888999998878865   4567788999999875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=2.8e-16  Score=152.96  Aligned_cols=163  Identities=25%  Similarity=0.286  Sum_probs=137.9

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      +++.|++++|.++.. + .+..+++|++|++++|++++..  .++.+++|++|++++|++++ +| .+..+++|+.|+++
T Consensus        47 ~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred             CccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccccc
Confidence            789999999999853 3 4889999999999999998643  46889999999999999985 44 58899999999999


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP  731 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~  731 (820)
                      +|.+. .++ .+. .++.++.+++++|.+++  +..+..+++|+++++++|++++ ++. +.++++|             
T Consensus       121 ~~~~~-~~~-~l~-~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~~-l~~l~~L-------------  180 (210)
T d1h6ta2         121 HNGIS-DIN-GLV-HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKL-------------  180 (210)
T ss_dssp             TSCCC-CCG-GGG-GCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTC-------------
T ss_pred             ccccc-ccc-ccc-ccccccccccccccccc--cccccccccccccccccccccc-ccc-ccCCCCC-------------
Confidence            99987 444 455 69999999999999985  3457789999999999999985 332 6666666             


Q ss_pred             CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEEeCCC
Q 045139          732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISLNLSK  789 (820)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L~Ls~  789 (820)
                                                  +.|||++|+++ .+|.+..+++|++|+|++
T Consensus       181 ----------------------------~~L~Ls~N~i~-~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         181 ----------------------------QNLYLSKNHIS-DLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             ----------------------------CEEECCSSCCC-BCGGGTTCTTCSEEEEEE
T ss_pred             ----------------------------CEEECCCCCCC-CChhhcCCCCCCEEEccC
Confidence                                        89999999998 688899999999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=6.4e-16  Score=149.07  Aligned_cols=159  Identities=26%  Similarity=0.371  Sum_probs=133.2

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      +++.|++++|.++. + +.+..+++|++|++++|++++..|  ++.+++|++|++++|.+... + .+.+++.|+.|+++
T Consensus        41 ~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~l~  114 (199)
T d2omxa2          41 QVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLTLF  114 (199)
T ss_dssp             TCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEECC
T ss_pred             CCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCcccccccccccccccc-c-cccccccccccccc
Confidence            78999999999984 3 358889999999999999986443  89999999999999998753 3 48899999999999


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCCcccccC
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSNAMIRYP  731 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~  731 (820)
                      +|.+... + .+. .+++|+.|++++|++.. + +.+..+++|+.|++++|++++. + .++++++|             
T Consensus       115 ~~~~~~~-~-~~~-~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L-------------  174 (199)
T d2omxa2         115 NNQITDI-D-PLK-NLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL-K-PLANLTTL-------------  174 (199)
T ss_dssp             SSCCCCC-G-GGT-TCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTC-------------
T ss_pred             ccccccc-c-ccc-hhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC-c-cccCCCCC-------------
Confidence            9998753 3 344 69999999999999974 3 3688999999999999999853 3 36666666             


Q ss_pred             CccccccCceeEEeeccccccccccCceEEEECCCCcCeecCCCcccccCCCEE
Q 045139          732 LRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIPEVTSLVGLISL  785 (820)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~l~~l~~L~~L  785 (820)
                                                  +.||+++|+++ .+|.++.+++|++|
T Consensus       175 ----------------------------~~L~ls~N~i~-~i~~l~~L~~L~~L  199 (199)
T d2omxa2         175 ----------------------------ERLDISSNKVS-DISVLAKLTNLESL  199 (199)
T ss_dssp             ----------------------------CEEECCSSCCC-CCGGGGGCTTCSEE
T ss_pred             ----------------------------CEEECCCCCCC-CCccccCCCCCCcC
Confidence                                        89999999998 57788899999876

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.7e-15  Score=152.30  Aligned_cols=184  Identities=23%  Similarity=0.223  Sum_probs=94.4

Q ss_pred             CCCCCCEEeccCCCCCCC-CCccCCCCCCCcEEeCCCCccccccchhhccCCCCCCeeeCCCcc-CCCCccHHHHhCCCC
Q 045139          138 SLKNIRHLDLSNAGFTGR-VPYQLGNLTSLQYLDLSFNFDMLSKKLEWLSQLSFLEYVRLNQVN-LGEATDWLQVVSQLP  215 (820)
Q Consensus       138 ~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~l~~l~  215 (820)
                      ...+|++||+++|.+++. ++..+.++++|++|+++++ ......+..++++++|++|+++++. +++ ..+......++
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~-~l~~~~~~~l~~~~~L~~L~Ls~c~~itd-~~l~~l~~~~~  121 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSE-FALQTLLSSCS  121 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCH-HHHHHHHHHCT
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCccccccccc-CCCcHHHHHHhcCCCCcCccccccccccc-cccchhhHHHH
Confidence            344566666666555432 2333455666666666655 2333334445555556666665542 222 12333344566


Q ss_pred             CCCEEEcCCCC-CCCCCccccccccCCcCCccEEECcCC--CCCCchhhhhhccCCCCcEEEccCCc-ccCCCCCCCCCC
Q 045139          216 SLTELQLRGCN-LPSVIASSSVSFSNSSRSLAHLDLSLN--DVSNSVYYWLFNSSSSLVYLDLSSNK-LQGPIPDSAFPN  291 (820)
Q Consensus       216 ~L~~L~Ls~n~-l~~~~~~~~~~l~~~~~~L~~L~Ls~n--~l~~~~~~~~~~~~~~L~~L~Ls~n~-l~g~ip~~~l~~  291 (820)
                      +|++|++++|. ++....  ...+...++.|+.|+++++  .+++.....+...+++|++|++++|. +++..... +..
T Consensus       122 ~L~~L~ls~c~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~-l~~  198 (284)
T d2astb2         122 RLDELNLSWCFDFTEKHV--QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQ  198 (284)
T ss_dssp             TCCEEECCCCTTCCHHHH--HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-GGG
T ss_pred             hccccccccccccccccc--hhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhh-hcc
Confidence            66666666653 221100  0112223356667776654  34433333344444477777777653 55444333 556


Q ss_pred             CCCCCEEECCCC-CCC-CcchhhhccCCCcEEEcCCC
Q 045139          292 PTSLSYLDLSNN-QLV-SVPKSFRNLCRLRALYQDSN  326 (820)
Q Consensus       292 l~~L~~L~Ls~n-~l~-~ip~~l~~l~~L~~L~L~~n  326 (820)
                      +++|++|++++| .++ .....++++++|++|+++++
T Consensus       199 ~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         199 LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            667777777764 444 22334666677777777665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.7e-15  Score=153.34  Aligned_cols=217  Identities=17%  Similarity=0.136  Sum_probs=155.5

Q ss_pred             cCCCCCCEEECcCCCCCCcccCccccCCCCCCEEeccCCCCCCCCCccCCCCCCCcEEeCCCCccccccchhh-ccCCCC
Q 045139          112 IGLQHLNYLNMKYNDFGGKQIPAFIGSLKNIRHLDLSNAGFTGRVPYQLGNLTSLQYLDLSFNFDMLSKKLEW-LSQLSF  190 (820)
Q Consensus       112 ~~l~~L~~L~Ls~n~l~~~~~p~~i~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~-l~~l~~  190 (820)
                      .....|++||++++.+.+..++..+.++++|++|+|++|.+++..+..++++++|++|+++++..+....... ...+++
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHh
Confidence            3456899999999988765566678899999999999999988888889999999999999874444444443 456899


Q ss_pred             CCeeeCCCccCCCCccHHHHhCC-CCCCCEEEcCCCC--CCCCCccccccccCCcCCccEEECcCC-CCCCchhhhhhcc
Q 045139          191 LEYVRLNQVNLGEATDWLQVVSQ-LPSLTELQLRGCN--LPSVIASSSVSFSNSSRSLAHLDLSLN-DVSNSVYYWLFNS  266 (820)
Q Consensus       191 L~~L~l~~n~l~~~~~~~~~l~~-l~~L~~L~Ls~n~--l~~~~~~~~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~  266 (820)
                      |++|+++++..-....+...+.. .++|+.|+++++.  ++...   +..+...+++|++|++++| .+++..+..+.+.
T Consensus       123 L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~---l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~  199 (284)
T d2astb2         123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD---LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL  199 (284)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHH---HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred             ccccccccccccccccchhhhcccccccchhhhccccccccccc---ccccccccccccccccccccCCCchhhhhhccc
Confidence            99999998753332234444444 5789999998763  33221   1233333389999999986 5777777777776


Q ss_pred             CCCCcEEEccCC-cccCCCCCCCCCCCCCCCEEECCCCCCC--CcchhhhccCCCcEEEcCCCCCCCcchhhhh
Q 045139          267 SSSLVYLDLSSN-KLQGPIPDSAFPNPTSLSYLDLSNNQLV--SVPKSFRNLCRLRALYQDSNNLTDLLPNLFL  337 (820)
Q Consensus       267 ~~~L~~L~Ls~n-~l~g~ip~~~l~~l~~L~~L~Ls~n~l~--~ip~~l~~l~~L~~L~L~~n~l~~~~~~~~~  337 (820)
                      . +|++|++++| .+++..... ++++++|++|+++++ ++  .++.....+++|+   +..+.++...+..++
T Consensus       200 ~-~L~~L~L~~C~~i~~~~l~~-L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~  267 (284)
T d2astb2         200 N-YLQHLSLSRCYDIIPETLLE-LGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---INCSHFTTIARPTIG  267 (284)
T ss_dssp             T-TCCEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCS
T ss_pred             C-cCCEEECCCCCCCChHHHHH-HhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---ccCccCCCCCCCccC
Confidence            5 9999999996 566544444 778999999999998 44  3444445666665   466677766555444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=4.2e-14  Score=123.92  Aligned_cols=117  Identities=26%  Similarity=0.354  Sum_probs=87.0

Q ss_pred             CEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccccccccCC
Q 045139          646 TVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAMTANKSSN  725 (820)
Q Consensus       646 ~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~  725 (820)
                      ++|||++|+++ .++. +. .+++|++|++++|+++ .+|..++.+++|+.|++++|++++ +| .+.+++.|       
T Consensus         1 R~L~Ls~n~l~-~l~~-l~-~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L-------   67 (124)
T d1dcea3           1 RVLHLAHKDLT-VLCH-LE-QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRL-------   67 (124)
T ss_dssp             SEEECTTSCCS-SCCC-GG-GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSC-------
T ss_pred             CEEEcCCCCCC-CCcc-cc-cCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-cccccccc-------
Confidence            57899999998 5553 55 6888999999999988 577788889999999999998874 44 35665555       


Q ss_pred             cccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeecCC--CcccccCCCEEeCCCCccccC---Ccccc
Q 045139          726 AMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGEIP--EVTSLVGLISLNLSKNSLTGP---IPSKI  800 (820)
Q Consensus       726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip--~l~~l~~L~~L~Ls~N~l~~~---ip~~l  800 (820)
                                                        +.|++++|+++...+  .++.+++|++|++++|.++..   .....
T Consensus        68 ----------------------------------~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~  113 (124)
T d1dcea3          68 ----------------------------------QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA  113 (124)
T ss_dssp             ----------------------------------CEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHH
T ss_pred             ----------------------------------CeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHH
Confidence                                              888999998874322  567788899999999988743   22233


Q ss_pred             cCCCCCCeE
Q 045139          801 GGLTLLNSL  809 (820)
Q Consensus       801 ~~l~~L~~L  809 (820)
                      ..+++|+.|
T Consensus       114 ~~lp~L~~L  122 (124)
T d1dcea3         114 EMLPSVSSI  122 (124)
T ss_dssp             HHCTTCSEE
T ss_pred             HHCcCcceE
Confidence            446777765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=9.9e-14  Score=127.95  Aligned_cols=126  Identities=21%  Similarity=0.206  Sum_probs=70.1

Q ss_pred             hhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCCCCCEEeCcCCCCccccchhccccccc
Q 045139          639 VKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNISGTVPQCLNNLTAM  718 (820)
Q Consensus       639 l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  718 (820)
                      +.++.++++|||++|+|+ .+|.... .+++|+.|+|++|+++. + +.+..+++|++|++++|+++...+..+..++.|
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~-~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGA-TLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGG-GTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCcccc-ccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCcccccccccc
Confidence            344555666666666665 3443332 45666666666666653 2 235566666666666666653333333444444


Q ss_pred             cccccCCcccccCCccccccCceeEEeeccccccccccCceEEEECCCCcCeec--CCCcccccCCCEEeCCCCccccCC
Q 045139          719 TANKSSNAMIRYPLRTDYYNDHALLVWKRKDSEYRNTLGLVKSIDLSSNRLYGE--IPEVTSLVGLISLNLSKNSLTGPI  796 (820)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~--ip~l~~l~~L~~L~Ls~N~l~~~i  796 (820)
                                                               +.|++++|+++..  +..+..+++|++|++++|.++. .
T Consensus        90 -----------------------------------------~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~  127 (162)
T d1a9na_          90 -----------------------------------------TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-K  127 (162)
T ss_dssp             -----------------------------------------CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-S
T ss_pred             -----------------------------------------ccceeccccccccccccccccccccchhhcCCCcccc-c
Confidence                                                     5666666666521  1145566677777777776653 3


Q ss_pred             c----ccccCCCCCCeEe
Q 045139          797 P----SKIGGLTLLNSLD  810 (820)
Q Consensus       797 p----~~l~~l~~L~~Ld  810 (820)
                      |    ..+..+++|++||
T Consensus       128 ~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         128 KHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             TTHHHHHHHHCTTCSEET
T ss_pred             cchHHHHHHHCCCcCeeC
Confidence            3    2356677777776

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.44  E-value=1.2e-14  Score=153.20  Aligned_cols=203  Identities=17%  Similarity=0.185  Sum_probs=100.2

Q ss_pred             CCchhhhcCCCccEEecCCCCccCCCCchhhc---cCCCcEEEEcCCCcCCCCCCcccccccCCCCceeccCCcCcCCCC
Q 045139          466 QFPKWLQTQNKFSELDVSAAEISDTVPNWFWD---LSPNLYYLNLSHNHFTGMLPDLSQKFTAYPPEIDLSANSFEGPIP  542 (820)
Q Consensus       466 ~~~~~l~~~~~L~~L~l~~n~i~~~~p~~~~~---~~~~L~~L~ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~~~~~~p  542 (820)
                      .+...+.....+++|++++|.+.......+..   ..++|+.++++++...............+                
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l----------------   85 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL----------------   85 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHH----------------
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHH----------------
Confidence            44566777888888888888876544333322   23567777776664432111100000000                


Q ss_pred             CCCCcceEEeccCcccccccchhhccccccccEEEccCCccccc----cCcccccCCCCcEEEcCCCeeeecCCCCc---
Q 045139          543 PIPLTVTSLILFKNMFSGSLSFLCQISDEHFRYLDLSDNLLSGE----LPNCSKNWQKLTVLNLANNKFSGKIPDSM---  615 (820)
Q Consensus       543 ~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l---  615 (820)
                                         .....  ...+|+.|++++|.++..    +...+..+++|++|++++|.+.......+   
T Consensus        86 -------------------~~~l~--~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~  144 (344)
T d2ca6a1          86 -------------------LQALL--KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA  144 (344)
T ss_dssp             -------------------HHHHT--TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred             -------------------HHHHh--hCCCcccccccccccccccccchhhhhcccccchheeccccccccccccccccc
Confidence                               00000  001677777777776643    33344556777777777776642111111   


Q ss_pred             ----------ccccCCcEEeccCCccccc----CCcchhcCCCCCEEECCCCcCccc-----cCcchhcCCCCccEEEcC
Q 045139          616 ----------DFNCMMLSLHLRNNSFIGE----LPSSVKSFTQLTVLDLGHNKISGI-----IPAWIGDSLPDLVVLSLR  676 (820)
Q Consensus       616 ----------~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~-----~p~~l~~~l~~L~~L~L~  676 (820)
                                ...+.|+.+++++|.+...    +...+..++.|++|++++|+++..     +...+. ..++|+.|+++
T Consensus       145 l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~-~~~~L~~L~Ls  223 (344)
T d2ca6a1         145 LQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA-YCQELKVLDLQ  223 (344)
T ss_dssp             HHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG-GCTTCCEEECC
T ss_pred             ccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhc-chhhhcccccc
Confidence                      1234556666666655421    223344455566666666655421     111222 34555555555


Q ss_pred             ccccccc----CCcccCCCCCCCEEeCcCCCCcc
Q 045139          677 SNNFHGR----VPVQVCHLQRIQVLDLSQNNISG  706 (820)
Q Consensus       677 ~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~  706 (820)
                      +|+++..    +...+..+++|++|++++|++++
T Consensus       224 ~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~  257 (344)
T d2ca6a1         224 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  257 (344)
T ss_dssp             SSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             cccccccccccccccccccccchhhhhhcCccCc
Confidence            5554321    22334445555555555555543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.8e-13  Score=126.16  Aligned_cols=121  Identities=18%  Similarity=0.233  Sum_probs=85.0

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      .+++|++++|+++ .++..+..+++|+.|++++|+|+. ++ .+..+++|++|++++|+++...+..+..+++|++|+++
T Consensus        19 ~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          19 RDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   95 (162)
T ss_dssp             SCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             cCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCccccccccccccceec
Confidence            6777888888877 446666677788888888888774 33 47777788888888888776655556677788888888


Q ss_pred             CCcCccccC--cchhcCCCCccEEEcCcccccccCCc----ccCCCCCCCEEe
Q 045139          652 HNKISGIIP--AWIGDSLPDLVVLSLRSNNFHGRVPV----QVCHLQRIQVLD  698 (820)
Q Consensus       652 ~N~l~~~~p--~~l~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~  698 (820)
                      +|+++. ++  ..+. .+++|++|++++|+++. .|.    .+..+++|++||
T Consensus        96 ~N~i~~-~~~l~~l~-~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          96 NNSLVE-LGDLDPLA-SLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             SCCCCC-GGGGGGGG-GCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEET
T ss_pred             cccccc-cccccccc-cccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeC
Confidence            887763 33  2444 57778888888877763 332    356677777776

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=3.2e-13  Score=118.23  Aligned_cols=101  Identities=23%  Similarity=0.285  Sum_probs=54.6

Q ss_pred             EEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCc
Q 045139          575 YLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNK  654 (820)
Q Consensus       575 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  654 (820)
                      +|++++|+++ .++ .+..+++|++|++++|+++ .+|..++.+++|++|++++|.+++. | .+..+++|++|++++|+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCc
Confidence            4566666665 333 3556666666666666665 3455555566666666666665532 2 35555566666666666


Q ss_pred             CccccC-cchhcCCCCccEEEcCccccc
Q 045139          655 ISGIIP-AWIGDSLPDLVVLSLRSNNFH  681 (820)
Q Consensus       655 l~~~~p-~~l~~~l~~L~~L~L~~N~l~  681 (820)
                      +++..+ ..+. .+++|++|++++|+++
T Consensus        77 i~~~~~~~~l~-~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQQSAAIQPLV-SCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSSTTGGGG-GCTTCCEEECTTSGGG
T ss_pred             cCCCCCchhhc-CCCCCCEEECCCCcCC
Confidence            552211 2333 4555555555555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.38  E-value=6.4e-14  Score=147.64  Aligned_cols=226  Identities=17%  Similarity=0.149  Sum_probs=113.7

Q ss_pred             ccccccCCCCCCEEECcCCCCCCc---ccCccccCCCCCCEEeccCCCCCCC----------CCccCCCCCCCcEEeCCC
Q 045139          107 ISSSLIGLQHLNYLNMKYNDFGGK---QIPAFIGSLKNIRHLDLSNAGFTGR----------VPYQLGNLTSLQYLDLSF  173 (820)
Q Consensus       107 i~~~l~~l~~L~~L~Ls~n~l~~~---~~p~~i~~l~~L~~L~Ls~n~l~~~----------~p~~l~~l~~L~~L~Ls~  173 (820)
                      +..++.+...|++|+|++|.+...   .+...+...++|+.|+++++.....          +...+..+++|++|++++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            445566777788888888776542   1233456667777777777654311          112233444555555554


Q ss_pred             CccccccchhhccCCCCCCeeeCCCccCCCC--ccHHHHhCCCCCCCEEEcCCCCCCCCCcccc---------c-cccCC
Q 045139          174 NFDMLSKKLEWLSQLSFLEYVRLNQVNLGEA--TDWLQVVSQLPSLTELQLRGCNLPSVIASSS---------V-SFSNS  241 (820)
Q Consensus       174 n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~---------~-~l~~~  241 (820)
                      |                         .+...  ..+...+...++|++|++++|.+.......+         . .....
T Consensus       103 n-------------------------~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~  157 (344)
T d2ca6a1         103 N-------------------------AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNA  157 (344)
T ss_dssp             C-------------------------CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             c-------------------------ccccccccchhhhhcccccchheecccccccccccccccccccccccccccccC
Confidence            4                         43332  1233344445555555555554421100000         0 00111


Q ss_pred             cCCccEEECcCCCCCCchhhh----hhccCCCCcEEEccCCcccCC----CCCCCCCCCCCCCEEECCCCCCC-----Cc
Q 045139          242 SRSLAHLDLSLNDVSNSVYYW----LFNSSSSLVYLDLSSNKLQGP----IPDSAFPNPTSLSYLDLSNNQLV-----SV  308 (820)
Q Consensus       242 ~~~L~~L~Ls~n~l~~~~~~~----~~~~~~~L~~L~Ls~n~l~g~----ip~~~l~~l~~L~~L~Ls~n~l~-----~i  308 (820)
                       +.|+.+++++|.++......    +... +.|++|++++|.++..    +....+..+++|++|++++|.++     .+
T Consensus       158 -~~L~~l~l~~n~i~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L  235 (344)
T d2ca6a1         158 -PPLRSIICGRNRLENGSMKEWAKTFQSH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL  235 (344)
T ss_dssp             -CCCCEEECCSSCCTGGGHHHHHHHHHHC-TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             -cccceeecccccccccccccccchhhhh-hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccc
Confidence             45666666666554322221    2222 3666666666665421    01112555666777777777665     23


Q ss_pred             chhhhccCCCcEEEcCCCCCCCcchhhhhh-cccCCcCCccEEEcCCCCCcc
Q 045139          309 PKSFRNLCRLRALYQDSNNLTDLLPNLFLK-LSNCSRDTLEILQLNSNMLRG  359 (820)
Q Consensus       309 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~~~~~~L~~L~L~~n~l~~  359 (820)
                      ...+..+++|++|++++|.+++.....+.. +..+....|++|++++|.+..
T Consensus       236 ~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         236 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            345566677777777777766543333321 111122357777777776653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.23  E-value=1.2e-13  Score=132.02  Aligned_cols=87  Identities=23%  Similarity=0.251  Sum_probs=40.6

Q ss_pred             CCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCccEEEcCcccccccCCcccCCCC
Q 045139          613 DSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPVQVCHLQ  692 (820)
Q Consensus       613 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~  692 (820)
                      ..++.+++|++|+|++|+|+. ++ .+..+++|++|++++|+++ .+|.... .+++|+.|++++|+++..  ..+..++
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~-~~~~L~~L~l~~N~i~~l--~~~~~l~  115 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA-VADTLEELWISYNQIASL--SGIEKLV  115 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHH-HHHHCCEEECSEEECCCH--HHHHHHH
T ss_pred             hHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccc-cccccccccccccccccc--ccccccc
Confidence            344555555555555555542 22 3555555555555555554 3333222 233455555555554421  1234444


Q ss_pred             CCCEEeCcCCCCc
Q 045139          693 RIQVLDLSQNNIS  705 (820)
Q Consensus       693 ~L~~L~Ls~N~l~  705 (820)
                      +|+.|++++|+++
T Consensus       116 ~L~~L~L~~N~i~  128 (198)
T d1m9la_         116 NLRVLYMSNNKIT  128 (198)
T ss_dssp             HSSEEEESEEECC
T ss_pred             cccccccccchhc
Confidence            4444444444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.2e-11  Score=112.85  Aligned_cols=106  Identities=15%  Similarity=0.050  Sum_probs=73.4

Q ss_pred             ccEEEccCCccccccCcccccCCCCcEEEcCCCe-eeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEECC
Q 045139          573 FRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNK-FSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLDLG  651 (820)
Q Consensus       573 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  651 (820)
                      .+.++.+++.+. ..|..+..+++|++|++++|+ ++...+.+|.++++|+.|++++|+|++..|.+|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            455677777666 456667777777777776553 665556667777777777777777777767777777777777777


Q ss_pred             CCcCccccCcchhcCCCCccEEEcCccccc
Q 045139          652 HNKISGIIPAWIGDSLPDLVVLSLRSNNFH  681 (820)
Q Consensus       652 ~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~  681 (820)
                      +|+|+ .+|...+ ....|+.|+|++|++.
T Consensus        89 ~N~l~-~l~~~~~-~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALE-SLSWKTV-QGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCS-CCCSTTT-CSCCCCEEECCSSCCC
T ss_pred             CCCCc-ccChhhh-ccccccccccCCCccc
Confidence            77776 5555544 3446777777777664

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.15  E-value=7.9e-13  Score=126.33  Aligned_cols=131  Identities=18%  Similarity=0.170  Sum_probs=99.8

Q ss_pred             cccEEEccCC--ccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCcccccCCcchhcCCCCCEEE
Q 045139          572 HFRYLDLSDN--LLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGELPSSVKSFTQLTVLD  649 (820)
Q Consensus       572 ~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  649 (820)
                      ..+.+++...  .++ .++..+..+++|++|+|++|+|+. ++ .+..+++|++|++++|.++ .+|.....+++|++|+
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~   99 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELW   99 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEE
T ss_pred             ccceeeeecccCchh-hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccccccccccc
Confidence            3455555543  233 455678889999999999999984 44 5888999999999999987 4566666677899999


Q ss_pred             CCCCcCccccCcchhcCCCCccEEEcCcccccccCC-cccCCCCCCCEEeCcCCCCccccc
Q 045139          650 LGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVP-VQVCHLQRIQVLDLSQNNISGTVP  709 (820)
Q Consensus       650 Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p  709 (820)
                      +++|+++. ++. +. .+++|+.|++++|+++.... ..+..+++|+.|++++|++....+
T Consensus       100 l~~N~i~~-l~~-~~-~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  157 (198)
T d1m9la_         100 ISYNQIAS-LSG-IE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             CSEEECCC-HHH-HH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred             cccccccc-ccc-cc-ccccccccccccchhccccccccccCCCccceeecCCCccccCcc
Confidence            99999984 443 44 68899999999999884322 467889999999999998875433

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.4e-10  Score=105.72  Aligned_cols=110  Identities=15%  Similarity=0.074  Sum_probs=92.6

Q ss_pred             cCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCc-ccccCCcchhcCCCCCEEECCCCcCccccCcchhcCCCCcc
Q 045139          593 NWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNS-FIGELPSSVKSFTQLTVLDLGHNKISGIIPAWIGDSLPDLV  671 (820)
Q Consensus       593 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~~l~~L~  671 (820)
                      .+...+.++.+++.+. ..|..+..+++|++|++++|+ ++...+..|.++++|+.|++++|+|+...|..+. .+++|+
T Consensus         6 ~c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~-~l~~L~   83 (156)
T d2ifga3           6 CPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH-FTPRLS   83 (156)
T ss_dssp             CCSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGG-SCSCCC
T ss_pred             CcCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccc-cccccc
Confidence            3445677999999988 578889999999999998765 8877778899999999999999999966566666 899999


Q ss_pred             EEEcCcccccccCCcccCCCCCCCEEeCcCCCCc
Q 045139          672 VLSLRSNNFHGRVPVQVCHLQRIQVLDLSQNNIS  705 (820)
Q Consensus       672 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  705 (820)
                      +|+|++|+++ .+|........|+.|+|++|++.
T Consensus        84 ~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          84 RLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             EEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            9999999999 45555444557999999999985

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.8e-08  Score=92.04  Aligned_cols=121  Identities=20%  Similarity=0.068  Sum_probs=66.4

Q ss_pred             cccEEEccCCccccccCcccccCCCCcEEEcCCCeeeecCCCCcccccCCcEEeccCCccccc--CCcchhcCCCCCEEE
Q 045139          572 HFRYLDLSDNLLSGELPNCSKNWQKLTVLNLANNKFSGKIPDSMDFNCMMLSLHLRNNSFIGE--LPSSVKSFTQLTVLD  649 (820)
Q Consensus       572 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~  649 (820)
                      ..+.|++++....    ..+..+..+..++..++... .++..+..+++|++|+|++|+|+..  ++..+..+++|+.|+
T Consensus        23 ~~~~Ldls~l~~~----~~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~   97 (162)
T d1koha1          23 SQQALDLKGLRSD----PDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN   97 (162)
T ss_dssp             SSCCBCCCCCSSC----TTTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCC
T ss_pred             hhCeeecccCCCC----chhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccc
Confidence            3455565554322    12333333333443333332 3333445567777777777777653  234566777777777


Q ss_pred             CCCCcCccccCcchhcCCCCccEEEcCcccccccCCc-------ccCCCCCCCEEe
Q 045139          650 LGHNKISGIIPAWIGDSLPDLVVLSLRSNNFHGRVPV-------QVCHLQRIQVLD  698 (820)
Q Consensus       650 Ls~N~l~~~~p~~l~~~l~~L~~L~L~~N~l~~~~p~-------~l~~l~~L~~L~  698 (820)
                      +++|+|+..-+.... ....|+.|++++|++......       .+..+++|+.||
T Consensus        98 Ls~N~i~~l~~l~~l-~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          98 LSGNELKSERELDKI-KGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             CTTSCCCCGGGHHHH-TTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             cccCccccchhhhhh-hccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            777777733222222 345677777777777654332       245667777765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=2.3e-08  Score=91.27  Aligned_cols=57  Identities=26%  Similarity=0.212  Sum_probs=35.8

Q ss_pred             EEEECCCCcCeecCC--CcccccCCCEEeCCCCccccCCccc-------ccCCCCCCeEeCCCCcCccc
Q 045139          760 KSIDLSSNRLYGEIP--EVTSLVGLISLNLSKNSLTGPIPSK-------IGGLTLLNSLDLSKNMLMRA  819 (820)
Q Consensus       760 ~~LdLs~N~l~~~ip--~l~~l~~L~~L~Ls~N~l~~~ip~~-------l~~l~~L~~LdLs~N~l~g~  819 (820)
                      +.|||++|+++ .++  .......|+.|++++|.+++.....       +..+++|+.||  ++++..+
T Consensus        94 ~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD--g~~v~p~  159 (162)
T d1koha1          94 KILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD--GHELPPP  159 (162)
T ss_dssp             CCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET--TEECCCC
T ss_pred             cccccccCccc-cchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC--cCCCcCC
Confidence            67777777777 333  3333456778888888877654432       55678888876  4444433

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.54  E-value=1.1e-05  Score=73.34  Aligned_cols=88  Identities=11%  Similarity=0.055  Sum_probs=46.2

Q ss_pred             cccccCCcEEeccCCccccc----CCcchhcCCCCCEEECCCCcCccccCc----chhcCCCCccEEEcCcccccc----
Q 045139          615 MDFNCMMLSLHLRNNSFIGE----LPSSVKSFTQLTVLDLGHNKISGIIPA----WIGDSLPDLVVLSLRSNNFHG----  682 (820)
Q Consensus       615 l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~----~l~~~l~~L~~L~L~~N~l~~----  682 (820)
                      +...+.|++|+|++|.+...    +...+...+.|++|+|++|.+++....    .+. ..++|++|++++|.+..    
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~-~n~sL~~L~l~~n~~~~~g~~  118 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTL-VTQSIVEFKADNQRQSVLGNQ  118 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTT-TTCCCSEEECCCCSSCCCCHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHH-hCCcCCEEECCCCcCCCccHH
Confidence            33344455555555555421    223344556666666666666543222    222 34566777776665431    


Q ss_pred             ---cCCcccCCCCCCCEEeCcCCC
Q 045139          683 ---RVPVQVCHLQRIQVLDLSQNN  703 (820)
Q Consensus       683 ---~~p~~l~~l~~L~~L~Ls~N~  703 (820)
                         .+...+...++|+.|+++.+.
T Consensus       119 ~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         119 VEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHhCCCccEeeCcCCC
Confidence               123444556777888877654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.48  E-value=5.7e-05  Score=68.38  Aligned_cols=10  Identities=10%  Similarity=0.657  Sum_probs=4.8

Q ss_pred             CCCCEEeccC
Q 045139          140 KNIRHLDLSN  149 (820)
Q Consensus       140 ~~L~~L~Ls~  149 (820)
                      ++|++|+|++
T Consensus        15 ~~L~~L~L~~   24 (167)
T d1pgva_          15 TDLKEVNINN   24 (167)
T ss_dssp             SSCCEEECTT
T ss_pred             CCCcEEEeCC
Confidence            4455555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.73  E-value=0.0006  Score=61.32  Aligned_cols=20  Identities=5%  Similarity=0.024  Sum_probs=10.8

Q ss_pred             hhccCCCcEEEcCCCCCCCc
Q 045139          312 FRNLCRLRALYQDSNNLTDL  331 (820)
Q Consensus       312 l~~l~~L~~L~L~~n~l~~~  331 (820)
                      +...++|++|++++|.++..
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~   61 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDP   61 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHH
T ss_pred             HhcCCccCeeeccCCcccHH
Confidence            44455555566655555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.64  E-value=0.0005  Score=61.87  Aligned_cols=11  Identities=18%  Similarity=0.422  Sum_probs=5.4

Q ss_pred             CCCCCEEeccC
Q 045139          139 LKNIRHLDLSN  149 (820)
Q Consensus       139 l~~L~~L~Ls~  149 (820)
                      .+.|++|+|++
T Consensus        16 ~~~L~~L~L~~   26 (166)
T d1io0a_          16 DPDLEEVNLNN   26 (166)
T ss_dssp             CTTCCEEECTT
T ss_pred             CCCCcEEEcCC
Confidence            34555555544