Citrus Sinensis ID: 045156

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
ALELPEVYMTANKWDLLPYRKVASLAMKVYTKTFMKHDGPRFIKYLTDVKVGKAKISTGALLPHGIIKSVNHETEFALFQVAELQWNRIVDDLSKEGKLRNCKAICDVSGSVHGTPLEVSVALGLLVSELSEEPWKGKLITFGEKPELHLVEGDDLKSKTRFVSNVNWDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYGSAVPEIIFWNLRHSKSTPVPEGQEGVALVSGFSKILIKLFLENEGVIDQEQVVEAGITENKKKQIDPVQVMEAAISGEEYQNLVVLD
cccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccccccHHHHHHHHHHHHHHHcccccccEEEEEccccEEEEEccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccEEEEEEccccccccccccccHHHHHHHHHHHccccccccEEEEEEcccccccccccccccEEEEccccHHHHHHHHHccccccHHHHHHHHHcccccccccHHHHHHHHHccccccccEEcc
ccccccHHHcHccHcccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHEcHHccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccHHHHHHHHHHHHHHHccccccccEEEEccccEEEEEccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccHHHcccEEEEEEcccHccccccccccHHHHHHHHHHHccccccccEEEEEEcccccccccccccccEEEEEcccHHHHHHHHHccccccHHHHEEEEccccccccccHHHHHHHHHcccHHccEEEEc
ALELPEVYMTANKWDLLPYRKVASLAMKVYTKTfmkhdgprFIKYLTDVKVgkakistgallphgiiksvNHETEFALFQVAELQWNRIVDdlskegklrnckaicdvsgsvhgtpLEVSVALGLLVSelseepwkgklitfgekpelhlvegddlksktrFVSNVNWDMNTDFQEVFDLILEVAvngnlkpeqMIKRLFVFsdmefdeaslhpweTDYQAIVRKYTekgygsavpEIIFWNlrhskstpvpegqegvaLVSGFSKILIKLFLenegvidqeqVVEAGItenkkkqidPVQVMEAAISgeeyqnlvvld
ALELPEVymtankwdllpyRKVASLAMKVYTktfmkhdgprFIKYLTDVKVGKAKISTGALLPHGIIKSVNHETEFALFQVAELQWNRIVDDLSKEGKLRNCKAICDvsgsvhgtPLEVSVALGLLVSELSEEPWKGKlitfgekpelhlvegddlkskTRFVSNVNWDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYGSAVPEIIFWNLRHSKSTPVPEGQEGVALVSGFSKILIKLFLENEGVIDQEQVVEAgitenkkkqidpVQVMEaaisgeeyqnlvvld
ALELPEVYMTANKWDLLPYRKVASLAMKVYTKTFMKHDGPRFIKYLTDVKVGKAKISTGALLPHGIIKSVNHETEFALFQVAELQWNRIVDDLSKEGKLRNCKAICDVSGSVHGTPLEVSVALGLLVSELSEEPWKGKLITFGEKPELHLVEGDDLKSKTRFVSNVNWDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYGSAVPEIIFWNLRHSKSTPVPEGQEGVALVSGFSKILIKLFLENEGVIDQEQVVEAGITENKKKQIDPVQVMEAAISGEEYQNLVVLD
*****EVYMTANKWDLLPYRKVASLAMKVYTKTFMKHDGPRFIKYLTDVKVGKAKISTGALLPHGIIKSVNHETEFALFQVAELQWNRIVDDLSKEGKLRNCKAICDVSGSVHGTPLEVSVALGLLVSELSEEPWKGKLITFGEKPELHLVEGDDLKSKTRFVSNVNWDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYGSAVPEIIFWNLRHS********QEGVALVSGFSKILIKLFLENEGVIDQEQVVEAGIT***********V*****************
ALELPEVYMTANKWDLLPYRKVASLAMKVYTKTFMKHDGPRFIKYLTDVKVGKAKISTGALLPHGIIKSVN********QVAELQWNRIVDDLSKEGKLRNCKAICDVSGSVHGTPLEVSVALGLLVSELSEEPWKGKLITFGEKPELHLVEGDDLKSKTRFVSNVNWDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYGSAVPEIIFWNLRHSKSTPVPEGQEGVALVSGFSKILIKLFLENEGVIDQEQVVEAGITENKKKQIDPVQVMEAAISGEEYQNLVVLD
ALELPEVYMTANKWDLLPYRKVASLAMKVYTKTFMKHDGPRFIKYLTDVKVGKAKISTGALLPHGIIKSVNHETEFALFQVAELQWNRIVDDLSKEGKLRNCKAICDVSGSVHGTPLEVSVALGLLVSELSEEPWKGKLITFGEKPELHLVEGDDLKSKTRFVSNVNWDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYGSAVPEIIFWNLRHSKSTPVPEGQEGVALVSGFSKILIKLFLENEGVIDQEQVVEAGITENKKKQIDPVQVMEAAISGEEYQNLVVLD
*LELPEVYMTANKWDLLPYRKVASLAMKVYTKTFMKHDGPRFIKYLTDVKVGKAKISTGALLPHGIIKSVNHETEFALFQVAELQWNRIVDDLSKEGKLRNCKAICDVSGSVHGTPLEVSVALGLLVSELSEEPWKGKLITFGEKPELHLVEGDDLKSKTRFVSNVNWDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYGSAVPEIIFWNLRHSKSTPVPEGQEGVALVSGFSKILIKLFLENEGVIDQEQVVEAGITENKKKQIDPVQVMEAAISGEEYQNLVVLD
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ALELPEVYMTANKWDLLPYRKVASLAMKVYTKTFMKHDGPRFIKYLTDVKVGKAKISTGALLPHGIIKSVNHETEFALFQVAELQWNRIVDDLSKEGKLRNCKAICDVSGSVHGTPLEVSVALGLLVSELSEEPWKGKLITFGEKPELHLVEGDDLKSKTRFVSNVNWDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYGSAVPEIIFWNLRHSKSTPVPEGQEGVALVSGFSKILIKLFLENEGVIDQEQVVEAGITENKKKQIDPVQVMEAAISGEEYQNLVVLD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query319 2.2.26 [Sep-21-2011]
Q5UNY4572 Uncharacterized protein L N/A no 0.849 0.473 0.344 8e-50
>sp|Q5UNY4|YL728_MIMIV Uncharacterized protein L728 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L728 PE=4 SV=1 Back     alignment and function desciption
 Score =  197 bits (501), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 100/290 (34%), Positives = 169/290 (58%), Gaps = 19/290 (6%)

Query: 2   LELPEVYMTANKWDLLPYRKVASLAMKVYTKTFMKHDGPR-------------FIKYLTD 48
           L++ E+ M+ +++D + + K+ S+A+      F +    +             + KYL D
Sbjct: 204 LQVLEMLMSTHQYDKIDFSKLPSVALMKMKNAFNRDTNSQGIKSDFRVNLHTSYTKYLQD 263

Query: 49  VKVGKAKISTGALLPHGIIKSVNHETEFALFQVAELQWNRIVDDLSKEGKLRNCKAICDV 108
           +  GK K++T  + PH ++      ++F   Q+ E QW+ I   +S  G   N  A+ DV
Sbjct: 264 LSKGKTKVNTKGIQPHELVGQYLSSSDFD--QLVESQWDAIKKGVSDSGTFNNVTAVVDV 321

Query: 109 SGSVHGTPLEVSVALGLLVSELSEEPWKGKLITFGEKPELHLVEGDDLKSKTRFVSNVNW 168
           SGS+HG P++V++ALG+LV+E +  P+ G++ITF EKP  H + G +L  K + + +  W
Sbjct: 322 SGSMHGQPMQVAIALGILVAECTSGPYHGRVITFHEKPSWHHLTGSNLMEKVKCMRDAPW 381

Query: 169 DMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTE 228
             +T+ + VFDL+L+ A+N  LKP +MI  LF+F+DM+F++      E+ ++   RK+TE
Sbjct: 382 GGSTNMKSVFDLVLQNAINAKLKPHEMIDTLFIFTDMQFNQCDCSGLESTFEYGQRKFTE 441

Query: 229 KGYGSAVPEIIFWNLR--HSKSTPVPEGQEGVALVSGFSKILIKLFLENE 276
            GY    P+++ WNLR  +SKS P+ +  EG  ++SGFS  L+K  +  E
Sbjct: 442 AGY--TFPKVVCWNLRTSNSKSLPLMKNDEGYVMLSGFSAELLKCIMNAE 489

Acanthamoeba polyphaga (taxid: 5757)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query319
357487679 729 hypothetical protein MTR_5g045160 [Medic 0.927 0.406 0.652 1e-117
356495071 646 PREDICTED: uncharacterized protein L728- 0.931 0.459 0.650 1e-116
357487673 589 hypothetical protein MTR_5g045130 [Medic 0.924 0.500 0.648 1e-116
255543160 657 conserved hypothetical protein [Ricinus 0.931 0.452 0.641 1e-111
224075499 651 predicted protein [Populus trichocarpa] 0.931 0.456 0.641 1e-111
297831352 643 hypothetical protein ARALYDRAFT_319184 [ 0.968 0.480 0.625 1e-110
449453862 638 PREDICTED: uncharacterized protein L728- 0.937 0.468 0.632 1e-110
449531493 638 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.937 0.468 0.628 1e-110
297807339 668 hypothetical protein ARALYDRAFT_488135 [ 0.934 0.446 0.595 1e-109
15240579 673 uncharacterized protein [Arabidopsis tha 0.931 0.441 0.579 1e-106
>gi|357487679|ref|XP_003614127.1| hypothetical protein MTR_5g045160 [Medicago truncatula] gi|355515462|gb|AES97085.1| hypothetical protein MTR_5g045160 [Medicago truncatula] Back     alignment and taxonomy information
 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 207/317 (65%), Positives = 251/317 (79%), Gaps = 21/317 (6%)

Query: 2   LELPEVYMTANKWDLLPYRKVASLAMKVYTKTFMKHDGPRFIKYLTDVKVGKAKISTGAL 61
           LELPEV++ AN+W L+PY +VAS+AMK Y + F+KHD  RF KYL DVK GK  I+ GAL
Sbjct: 368 LELPEVFIGANQWGLIPYNRVASVAMKFYKEKFLKHDKERFEKYLEDVKAGKTTIAAGAL 427

Query: 62  LPHGIIKSVNHETEFALFQVAELQWNRIVDDLSKEGKLRNCKAICDVSGSVHGTPLEVSV 121
           LPH II+S++ E      +VAELQW RIVDDL K+GK+RNC A+CDVSGS+HGTP+EV V
Sbjct: 428 LPHEIIESLDDEDGG---EVAELQWKRIVDDLLKKGKMRNCLAVCDVSGSMHGTPMEVCV 484

Query: 122 ALGLLVSELSEEPWKGKLITFGEKPELHLVEGDDLKSKTRFVSNVNWDMNTDFQEVFDLI 181
           ALGLLVSEL+EEPWKGK+ITF  +P+LH+++GD+LKSKT+FV N++W MNTDFQ+VFD I
Sbjct: 485 ALGLLVSELNEEPWKGKVITFSREPQLHVIKGDNLKSKTQFVRNMDWGMNTDFQKVFDRI 544

Query: 182 LEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYGSAVPEIIFW 241
           L+VAVNGNLK +QMIKR+FVFSDMEFD+AS + WETDYQAI RKY EKGYGSAVP+I+FW
Sbjct: 545 LDVAVNGNLKEDQMIKRIFVFSDMEFDQASANSWETDYQAITRKYREKGYGSAVPQIVFW 604

Query: 242 NLRHSKSTPVPEGQEGVALVSGFSKILIKLFLENEGVIDQEQVVEAGITENKKKQIDPVQ 301
           NLR SK+TPVP  Q+GVALVSGFSK L+ LF +N+G                   I PV+
Sbjct: 605 NLRDSKATPVPSTQKGVALVSGFSKNLLTLFFDNDG------------------DISPVE 646

Query: 302 VMEAAISGEEYQNLVVL 318
            MEAAI+G EYQ LVV 
Sbjct: 647 AMEAAIAGPEYQKLVVC 663

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356495071|ref|XP_003516404.1| PREDICTED: uncharacterized protein L728-like [Glycine max] Back     alignment and taxonomy information
>gi|357487673|ref|XP_003614124.1| hypothetical protein MTR_5g045130 [Medicago truncatula] gi|355515459|gb|AES97082.1| hypothetical protein MTR_5g045130 [Medicago truncatula] Back     alignment and taxonomy information
>gi|255543160|ref|XP_002512643.1| conserved hypothetical protein [Ricinus communis] gi|223548604|gb|EEF50095.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224075499|ref|XP_002304655.1| predicted protein [Populus trichocarpa] gi|222842087|gb|EEE79634.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297831352|ref|XP_002883558.1| hypothetical protein ARALYDRAFT_319184 [Arabidopsis lyrata subsp. lyrata] gi|297329398|gb|EFH59817.1| hypothetical protein ARALYDRAFT_319184 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449453862|ref|XP_004144675.1| PREDICTED: uncharacterized protein L728-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449531493|ref|XP_004172720.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein L728-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297807339|ref|XP_002871553.1| hypothetical protein ARALYDRAFT_488135 [Arabidopsis lyrata subsp. lyrata] gi|297317390|gb|EFH47812.1| hypothetical protein ARALYDRAFT_488135 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15240579|ref|NP_196825.1| uncharacterized protein [Arabidopsis thaliana] gi|7529276|emb|CAB86628.1| putative protein [Arabidopsis thaliana] gi|18086395|gb|AAL57656.1| AT5g13210/T31B5_30 [Arabidopsis thaliana] gi|332004481|gb|AED91864.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query319
TAIR|locus:2183911673 AT5G13210 [Arabidopsis thalian 0.648 0.307 0.657 4.2e-98
TAIR|locus:2087333715 AT3G24780 "AT3G24780" [Arabido 0.648 0.289 0.666 2.1e-92
TAIR|locus:2176491643 AT5G43390 "AT5G43390" [Arabido 0.721 0.357 0.581 1.6e-71
TAIR|locus:2176501655 AT5G43400 "AT5G43400" [Arabido 0.968 0.471 0.486 1.1e-69
DICTYBASE|DDB_G0281913509 DDB_G0281913 "unknown" [Dictyo 0.927 0.581 0.357 9.8e-48
UNIPROTKB|G4MM18795 MGG_06799 "Uncharacterized pro 0.514 0.206 0.356 1.4e-33
TAIR|locus:2183911 AT5G13210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 724 (259.9 bits), Expect = 4.2e-98, Sum P(2) = 4.2e-98
 Identities = 138/210 (65%), Positives = 166/210 (79%)

Query:     2 LELPEVYMTANKWDLLPYRKVASLAMKVYTKTFMKHDGPRFIKYLTDVKVGKAKISTGAL 61
             L+LPEVYM A  WD+LPY +VAS+AMK Y + F+KHD  RF +YL D K GK K++ GA+
Sbjct:   357 LQLPEVYMGARNWDILPYNRVASVAMKSYKEIFLKHDAERFQQYLDDAKAGKTKVAAGAV 416

Query:    62 LPHGIIKSVNHETEFALFQVAELQWNRIVDDLSKEGKLRNCKAICDVSGSVHGTPLEVSV 121
             LPH II+ ++        QVAELQW R VDD+ ++G LRNC A+CDVSGS++G P+EV V
Sbjct:   417 LPHEIIRELDGGDGG---QVAELQWKRTVDDMKEKGSLRNCIAVCDVSGSMNGEPMEVCV 473

Query:   122 ALGLLVSELSEEPWKGKLITFGEKPELHLVEGDDLKSKTRFVSNVNWDMNTDFQEVFDLI 181
             ALGLLVSELSEEPWKGKLITF + PELHLV+GDDL SKT FV  + W MNTDFQ+VFDLI
Sbjct:   474 ALGLLVSELSEEPWKGKLITFSQNPELHLVKGDDLYSKTEFVKKMQWGMNTDFQKVFDLI 533

Query:   182 LEVAVNGNLKPEQMIKRLFVFSDMEFDEAS 211
             L VAV   LKPE+MIKR+FVFSDMEFD+A+
Sbjct:   534 LGVAVQEKLKPEEMIKRVFVFSDMEFDQAA 563
GO:0009507 "chloroplast" evidence=ISM
TAIR|locus:2087333 AT3G24780 "AT3G24780" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176491 AT5G43390 "AT5G43390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176501 AT5G43400 "AT5G43400" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0281913 DDB_G0281913 "unknown" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|G4MM18 MGG_06799 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query319
pfam11443414 pfam11443, DUF2828, Domain of unknown function (DU 1e-147
>gnl|CDD|221111 pfam11443, DUF2828, Domain of unknown function (DUF2828) Back     alignment and domain information 
 Score =  420 bits (1082), Expect = e-147
 Identities = 173/312 (55%), Positives = 211/312 (67%), Gaps = 26/312 (8%)

Query: 1   ALELPEVYMTANKWDLLPYRKVASLAMKVYTKTFMKHDGPRFIKYLTDVKVGKAKISTGA 60
           AL+L EV M+A +WD + Y +V S+AMK Y K F+KHDG RF  YL DVK GKAKI+ GA
Sbjct: 125 ALQLVEVKMSARQWDKIDYSRVPSVAMKRYKKAFLKHDGERFTAYLEDVKKGKAKINAGA 184

Query: 61  LLPHGIIKSVNHETEFALFQVAELQWNRIVDDLSKEGKLRNCKAICDVSGSVHGTPLEVS 120
           LLPH IIKSV   +     +VAELQW  +VDD+ + G LRNC A+CDVSGS+ G P++V 
Sbjct: 185 LLPHDIIKSVLSGSADDS-KVAELQWKALVDDMRESGSLRNCIAVCDVSGSMSGPPMDVC 243

Query: 121 VALGLLVSELSEEPWKGKLITFGEKPELHLVEGDDLKSKTRFVSNVNWDMNTDFQEVFDL 180
           +ALGLLVSELSE P+KG++ITF   P+LH ++GD L+ K  FV  + W M+T+FQ+VFDL
Sbjct: 244 IALGLLVSELSEGPFKGRVITFSSNPQLHHIKGDSLREKVSFVRRMPWGMSTNFQKVFDL 303

Query: 181 ILEVAVNGNLKPEQMIKRLFVFSDMEFDEAS---LHPWETDYQAIVRKYTEKGYGSAVPE 237
           ILE AV   L PE M KRLFVFSDMEFD+AS      WETDY+AI RK+ E GY   VPE
Sbjct: 304 ILETAVENKLPPEDMPKRLFVFSDMEFDQASGGTSRRWETDYEAIQRKFKEAGYE--VPE 361

Query: 238 IIFWNLRHSKS-TPVPEGQEGVALVSGFSKILIKLFLENEGVIDQEQVVEAGITENKKKQ 296
           ++FWNL  S+S  PV    EGVALVSGFS  L+KLFLE  GV                  
Sbjct: 362 LVFWNLAGSRSNVPVTSNDEGVALVSGFSPALLKLFLEGGGV------------------ 403

Query: 297 IDPVQVMEAAIS 308
            +P+ VM  AI 
Sbjct: 404 -NPMDVMLKAIG 414

This is a uncharacterized domain found in eukaryotes and viruses. Length = 414

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 319
PF11443534 DUF2828: Domain of unknown function (DUF2828); Int 100.0
COG2425437 Uncharacterized protein containing a von Willebran 99.16
cd01462152 VWA_YIEM_type VWA YIEM type: Von Willebrand factor 99.12
cd01461171 vWA_interalpha_trypsin_inhibitor vWA_interalpha tr 99.09
PRK10997487 yieM hypothetical protein; Provisional 99.07
cd01465170 vWA_subgroup VWA subgroup: Von Willebrand factor t 98.99
cd01463190 vWA_VGCC_like VWA Voltage gated Calcium channel li 98.93
PF05762222 VWA_CoxE: VWA domain containing CoxE-like protein; 98.89
PF13768155 VWA_3: von Willebrand factor type A domain 98.88
cd01451178 vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch 98.86
cd01464176 vWA_subfamily VWA subfamily: Von Willebrand factor 98.76
cd01470198 vWA_complement_factors Complement factors B and C2 98.75
cd01482164 vWA_collagen_alphaI-XII-like Collagen: The extrace 98.74
cd01450161 vWFA_subfamily_ECM Von Willebrand factor type A (v 98.74
cd01454174 vWA_norD_type norD type: Denitrifying bacteria con 98.71
cd00198161 vWFA Von Willebrand factor type A (vWA) domain was 98.69
cd01480186 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI 98.69
cd01474185 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi 98.69
cd01456206 vWA_ywmD_type VWA ywmD type:Von Willebrand factor 98.68
TIGR03788 596 marine_srt_targ marine proteobacterial sortase tar 98.64
cd01472164 vWA_collagen von Willebrand factor (vWF) type A do 98.63
cd01466155 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact 98.62
TIGR02031589 BchD-ChlD magnesium chelatase ATPase subunit D. Th 98.53
smart00327177 VWA von Willebrand factor (vWF) type A domain. VWA 98.53
cd01471186 vWA_micronemal_protein Micronemal proteins: The To 98.48
PRK13406584 bchD magnesium chelatase subunit D; Provisional 98.48
PRK13685326 hypothetical protein; Provisional 98.47
PF13519172 VWA_2: von Willebrand factor type A domain; PDB: 3 98.45
cd01467180 vWA_BatA_type VWA BatA type: Von Willebrand factor 98.39
cd01476163 VWA_integrin_invertebrates VWA_integrin (invertebr 98.38
COG1240261 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis 98.37
TIGR02442633 Cob-chelat-sub cobaltochelatase subunit. A number 98.35
PF00092178 VWA: von Willebrand factor type A domain; InterPro 98.34
PF09967126 DUF2201: VWA-like domain (DUF2201); InterPro: IPR0 98.26
cd01469177 vWA_integrins_alpha_subunit Integrins are a class 98.26
cd01473192 vWA_CTRP CTRP for CS protein-TRAP-related protein: 98.21
cd01475224 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, 98.16
cd01457199 vWA_ORF176_type VWA ORF176 type: Von Willebrand fa 98.13
TIGR03436296 acidobact_VWFA VWFA-related Acidobacterial domain. 98.11
cd01477193 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand 98.07
TIGR00868 863 hCaCC calcium-activated chloride channel protein 1 98.0
PTZ00441 576 sporozoite surface protein 2 (SSP2); Provisional 97.99
PF10138200 vWA-TerF-like: vWA found in TerF C terminus ; Inte 97.99
COG4245207 TerY Uncharacterized protein encoded in toxicity p 97.77
cd01453183 vWA_transcription_factor_IIH_type Transcription fa 97.69
cd01460266 vWA_midasin VWA_Midasin: Midasin is a member of th 97.56
cd01481165 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V 97.55
COG3552395 CoxE Protein containing von Willebrand factor type 97.47
cd01458218 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heter 97.12
cd01452187 VWA_26S_proteasome_subunit 26S proteasome plays a 97.0
KOG2353 1104 consensus L-type voltage-dependent Ca2+ channel, a 96.77
KOG4465598 consensus Uncharacterized conserved protein [Funct 96.57
PF11775219 CobT_C: Cobalamin biosynthesis protein CobT VWA do 96.53
COG3864396 Uncharacterized protein conserved in bacteria [Fun 96.36
cd01455191 vWA_F11C1-5a_type Von Willebrand factor type A (vW 95.33
PF04285421 DUF444: Protein of unknown function (DUF444); Inte 95.31
COG4867652 Uncharacterized protein with a von Willebrand fact 94.56
PRK05325401 hypothetical protein; Provisional 94.54
TIGR02877371 spore_yhbH sporulation protein YhbH. This protein 94.28
TIGR01651600 CobT cobaltochelatase, CobT subunit. This model de 94.2
cd01459254 vWA_copine_like VWA Copine: Copines are phospholip 92.28
COG2304 399 Uncharacterized protein containing a von Willebran 90.7
KOG3768 888 consensus DEAD box RNA helicase [General function 86.58
COG2718423 Uncharacterized conserved protein [Function unknow 84.52
smart00187423 INB Integrin beta subunits (N-terminal portion of 84.4
>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins Back     alignment and domain information 
Probab=100.00  E-value=1.3e-107  Score=825.02  Aligned_cols=288  Identities=57%  Similarity=0.986  Sum_probs=276.7

Q ss_pred             CCcCccccccccCCCCCCCCchHHHHHHHhHHHHhhhchHHHHHHHHHHhhcccccccCCCChHHHHHHhhhcCchhhhH
Q 045156            1 ALELPEVYMTANKWDLLPYRKVASLAMKVYTKTFMKHDGPRFIKYLTDVKVGKAKISTGALLPHGIIKSVNHETEFALFQ   80 (319)
Q Consensus         1 ~L~ivE~~ms~~~w~~i~Y~rvpS~Am~~y~~aF~k~D~erf~~yl~~v~~G~aki~~~~l~P~eiv~~~~~~~~~~~~~   80 (319)
                      +|+|||++||+++|++|+|+||||+||++|++||.|||++||++||++|++|++||||++|||||||++++.++. ..+.
T Consensus       243 ~l~ivE~~ms~~~w~~i~Y~rVpS~Am~~y~~aF~k~D~erf~~yl~~v~~G~~ki~~~~L~P~eiv~~~~~~~~-~~~~  321 (534)
T PF11443_consen  243 ALEIVERYMSANDWDEIDYSRVPSVAMKKYKKAFLKHDEERFQEYLEDVKKGKAKINAGTLLPHEIVASALKGDS-DDSE  321 (534)
T ss_pred             hhcccHHHhhhccccCCCccccccHHHHHHHHHHHhhCHHHHHHHHHHHhcCcceecCCCCCHHHHHHHHhcccc-chhH
Confidence            589999999999999999999999999999999999999999999999999999999999999999999998753 1245


Q ss_pred             HHHHHHHHHHHHHhhcCCCcceEEEEeCCCCCCCChHHHHHHHHHHHhhhccCCcccEEEEeCCCceEEEecCCCHHHHH
Q 045156           81 VAELQWNRIVDDLSKEGKLRNCKAICDVSGSVHGTPLEVSVALGLLVSELSEEPWKGKLITFGEKPELHLVEGDDLKSKT  160 (319)
Q Consensus        81 ~~e~qW~~lv~~l~~~g~~~~~I~v~DvSGSM~g~p~dvaiaL~lllae~~~~~~~~~~ItFs~~p~~~~l~g~~l~ekv  160 (319)
                      ++|+||++|||++++.|+++|||+||||||||+|+||+||||||||+||++++||+|+|||||++|++|+|+|.+|.|++
T Consensus       322 ~~e~qWk~lv~~~~~~g~l~n~iav~DvSGSM~~~pm~vaiaLgll~ae~~~~pf~~~~ITFs~~P~~~~i~g~~l~ekv  401 (534)
T PF11443_consen  322 VAELQWKTLVDYLKDSGSLENCIAVCDVSGSMSGPPMDVAIALGLLIAELNKGPFKGRFITFSENPQLHKIKGDTLREKV  401 (534)
T ss_pred             HHHHHHHHHHHHHhccCCccceEEEEecCCccCccHHHHHHHHHHHHHHhcccccCCeEEeecCCceEEEecCCCHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCccccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCccccccC---CCCcchHHHHHHHHHhcCCCCCCCe
Q 045156          161 RFVSNVNWDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASL---HPWETDYQAIVRKYTEKGYGSAVPE  237 (319)
Q Consensus       161 ~~i~~~~~g~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~---~~w~t~~e~i~~ky~~~Gy~~~~P~  237 (319)
                      +++++++||+||||++||++||++|++++|+||||||+||||||||||+|++   +.|+|+||.|+++|+++||+  +|+
T Consensus       402 ~~~~~~~wg~nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfV~SDMeFD~a~~~~~~~w~T~~e~i~~~f~~aGY~--~P~  479 (534)
T PF11443_consen  402 RFIRRMDWGMNTNFQAVFDLILETAVKNKLKQEDMPKRLFVFSDMEFDQASNSSDRPWETNFEAIKRKFEEAGYE--LPE  479 (534)
T ss_pred             HHHHhCCcccCCcHHHHHHHHHHHHHHcCCChHHCCceEEEEeccccccccccccCccccHHHHHHHHHHHhCCC--CCc
Confidence            9999999999999999999999999999999999999999999999999988   56899999999999999999  999


Q ss_pred             EEEEeCCCC-CCCCcccCCCCeEEEeccCHHHHHHHHhCCCccchhhHhhhhhhcccccCCCHHHHHHHhhC
Q 045156          238 IIFWNLRHS-KSTPVPEGQEGVALVSGFSKILIKLFLENEGVIDQEQVVEAGITENKKKQIDPVQVMEAAIS  308 (319)
Q Consensus       238 ivfWNl~~~-~~~Pv~~~~~gv~LVSG~S~~i~k~~l~~~g~~~~~~~~~~~~~~~~~~~~~P~~~m~~ai~  308 (319)
                      ||||||+++ +++||+++++||+|||||||+|||+||+++|                 +.+||+++|++||+
T Consensus       480 iVFWNl~~~~~~~PV~~~~~GvaLVSGfS~~llk~~l~~~~-----------------~~~~P~~~m~~ai~  534 (534)
T PF11443_consen  480 IVFWNLRGRSSNKPVTANEKGVALVSGFSPNLLKMFLEGGG-----------------KEMDPYSVMLKAIS  534 (534)
T ss_pred             eEEeecCCCCCCCCceeCCCCeEEEecCCHHHHHHHHcCCC-----------------CCCCHHHHHHHHhC
Confidence            999999998 5599999999999999999999999999976                 12499999999996

>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) Back     alignment and domain information
>PRK10997 yieM hypothetical protein; Provisional Back     alignment and domain information
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta Back     alignment and domain information
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown Back     alignment and domain information
>PF13768 VWA_3: von Willebrand factor type A domain Back     alignment and domain information
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto) Back     alignment and domain information
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation Back     alignment and domain information
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases Back     alignment and domain information
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax Back     alignment and domain information
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein Back     alignment and domain information
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins Back     alignment and domain information
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D Back     alignment and domain information
>smart00327 VWA von Willebrand factor (vWF) type A domain Back     alignment and domain information
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell Back     alignment and domain information
>PRK13406 bchD magnesium chelatase subunit D; Provisional Back     alignment and domain information
>PRK13685 hypothetical protein; Provisional Back     alignment and domain information
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A Back     alignment and domain information
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions Back     alignment and domain information
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] Back     alignment and domain information
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit Back     alignment and domain information
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma Back     alignment and domain information
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function Back     alignment and domain information
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration Back     alignment and domain information
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology Back     alignment and domain information
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity Back     alignment and domain information
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain Back     alignment and domain information
>cd01477 vWA_F09G8-8_type VWA F09G8 Back     alignment and domain information
>TIGR00868 hCaCC calcium-activated chloride channel protein 1 Back     alignment and domain information
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional Back     alignment and domain information
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts Back     alignment and domain information
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only] Back     alignment and domain information
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme Back     alignment and domain information
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family Back     alignment and domain information
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain Back     alignment and domain information
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins Back     alignment and domain information
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG4465 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain Back     alignment and domain information
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56 Back     alignment and domain information
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>PRK05325 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02877 spore_yhbH sporulation protein YhbH Back     alignment and domain information
>TIGR01651 CobT cobaltochelatase, CobT subunit Back     alignment and domain information
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium Back     alignment and domain information
>COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>KOG3768 consensus DEAD box RNA helicase [General function prediction only] Back     alignment and domain information
>COG2718 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query319
2nvo_A535 RO sixty-related protein, RSR; alpha helical repea 2e-09
1yvr_A538 RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 2e-06
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans} Length = 535 Back     alignment and structure
 Score = 57.9 bits (139), Expect = 2e-09
 Identities = 40/304 (13%), Positives = 89/304 (29%), Gaps = 53/304 (17%)

Query: 4   LPEVYMTANKWDLLPYRKVASLAMKVYTKTFMKH-----DGPRFIKYLTDVKVGKAKIST 58
           +P     A  +     +      +        +      +    ++ + +     A +  
Sbjct: 252 VPTHVRGAEVYRAA-MQTNGLTWLLRNLGNLGRVGVLTPNDSATVQAVIERLTDPAALKR 310

Query: 59  GALLP-------------HGIIKSVNHETEFALFQVAELQWNRIVDDLSKEGKLRNCKAI 105
           G + P              G+           +    E  +     ++            
Sbjct: 311 GRIHPLDALKARLVYAQGQGVRGKGTWLPVPRVVDALEEAFTLAFGNVQPANT--RHLLA 368

Query: 106 CDVSGSVHG---------TPLEVSVALGLLVSELSEEPWKGKLITFGEKP-ELHLVEGDD 155
            DVSGS+           TP   + A+ L+             + F E+   L +   D 
Sbjct: 369 LDVSGSMTCGDVAGVPGLTPNMAAAAMSLIALRTEP---DALTMGFAEQFRPLGITPRDT 425

Query: 156 LKSKTRFVSNVNWDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPW 215
           L+S  +   +V++   TD  +      +  ++        +    V++D E     +HP 
Sbjct: 426 LESAMQKAQSVSFG-GTDCAQPILWAAQERLD--------VDTFVVYTDNETWAGQVHP- 475

Query: 216 ETDYQAIVRKYTEKGYGSAVPEIIFWNLRHSKSTPVPEGQEGVALVSGFSK---ILIKLF 272
                  + +Y +K      P++I   L  ++ +     +  +  V GF      ++  F
Sbjct: 476 ----TVALDQYAQKMG--RAPKLIVVGLTATEFSIADPQRRDMLDVVGFDAAAPNVMTAF 529

Query: 273 LENE 276
              E
Sbjct: 530 ARGE 533
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A Length = 538 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query319
2nvo_A535 RO sixty-related protein, RSR; alpha helical repea 99.94
1yvr_A538 RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 99.82
2x31_A189 Magnesium-chelatase 60 kDa subunit; ligase, bacter 98.99
3ibs_A218 Conserved hypothetical protein BATB; structural ge 98.85
1shu_X182 Anthrax toxin receptor 2; alpha/beta rossmann fold 98.78
2xgg_A178 Microneme protein 2; A/I domain, cell adhesion, hy 98.76
1q0p_A223 Complement factor B; VON willebrand factor, MAC-1, 98.72
3n2n_F185 Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho 98.71
1ijb_A202 VON willebrand factor; dinucleotide-binding fold, 98.58
1atz_A189 VON willebrand factor; collagen-binding, hemostasi 98.58
4hqf_A281 Thrombospondin-related anonymous protein, trap; ma 98.57
4hqo_A266 Sporozoite surface protein 2; malaria, gliding mot 98.55
4fx5_A 464 VON willebrand factor type A; structural genomics, 98.51
1mf7_A194 Integrin alpha M; cell adhesion; 1.25A {Homo sapie 98.5
1n3y_A198 Integrin alpha-X; alpha/beta rossmann fold, cell a 98.44
1v7p_C200 Integrin alpha-2; snake venom, C-type lectin, anta 98.4
1mjn_A179 Integrin alpha-L; rossmann fold, immune system; 1. 98.39
2b2x_A223 Integrin alpha-1; computational design, antibody-a 98.39
4b4t_W268 RPN10, 26S proteasome regulatory subunit RPN10; hy 98.39
1pt6_A213 Integrin alpha-1; cell adhesion; 1.87A {Homo sapie 98.38
2odp_A 509 Complement C2; C3/C5 convertase, complement serin 98.35
3zqk_A199 VON willebrand factor; blood clotting, adamts-13, 98.28
3hrz_D 741 Complement factor B; serine protease, glycosilated 98.28
1rrk_A 497 Complement factor B; BB, hydrolase; 2.00A {Homo sa 98.26
2x5n_A192 SPRPN10, 26S proteasome regulatory subunit RPN10; 97.93
3rag_A242 Uncharacterized protein; structural genomics, PSI- 97.69
3k6s_A 1095 Integrin alpha-X; cell receptor, adhesion molecule 97.53
1jey_B 565 KU80; double-strand DNA break repair, non-homologo 97.33
2ww8_A 893 RRGA, cell WALL surface anchor family protein; IGG 97.02
1jey_A 609 KU70; double-strand DNA break repair, non-homologo 95.38
2iue_A212 Pactolus I-domain; membrane protein, CD, ITC, limb 95.25
3fcs_B 690 Integrin beta-3; beta propeller, rossmann fold, EG 93.05
3vi3_B454 Integrin beta-1; beta propeller fold, rossman fold 92.15
3t3p_B 472 Integrin beta-3; integrin, cell adhesion, blood cl 91.78
3k6s_B 687 Integrin beta-2; cell receptor, adhesion molecule, 91.22
3v4v_B503 Integrin beta-7; cell adhesion, madcam-1, membrane 90.34
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans} Back     alignment and structure
Probab=99.94  E-value=9.6e-27  Score=235.46  Aligned_cols=242  Identities=15%  Similarity=0.133  Sum_probs=185.7

Q ss_pred             ccCCCCCCCCchHHHHHHHhHHHHhhh------chHHHHHHHHHHhhcccccccCCCChHHHHHHhh---hcCc------
Q 045156           11 ANKWDLLPYRKVASLAMKVYTKTFMKH------DGPRFIKYLTDVKVGKAKISTGALLPHGIIKSVN---HETE------   75 (319)
Q Consensus        11 ~~~w~~i~Y~rvpS~Am~~y~~aF~k~------D~erf~~yl~~v~~G~aki~~~~l~P~eiv~~~~---~~~~------   75 (319)
                      ++.|+.| +.++|+.||.+|.+.|.+|      |.+|++++++.+. ++.+|+.+.++|+.+..+++   .|.+      
T Consensus       259 ~~~W~~L-i~~mp~~AllrNlr~~~~~g~~~~~~~~~~e~v~~~L~-d~~~v~~s~~~Pf~~~~a~r~y~~G~dd~r~id  336 (535)
T 2nvo_A          259 AEVYRAA-MQTNGLTWLLRNLGNLGRVGVLTPNDSATVQAVIERLT-DPAALKRGRIHPLDALKARLVYAQGQGVRGKGT  336 (535)
T ss_dssp             HHHHHHH-HTTCCHHHHHHHHHHHHHTTSSCTTCHHHHHHHHHHHT-CHHHHHHTTCCHHHHHHHHHHHHTSBCSTTCCB
T ss_pred             HHHHHHH-HHCCCHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhC-CHhhHhhcCCCcHHHHHHHHHhhcccCccCCCC
Confidence            7889888 6699999999999999999      6669999999998 67799999999999999887   2210      


Q ss_pred             ---hhh-hHHHHHHHHHHHHHHhhcCCCcceEEEEeCCCCCCC---------ChHHHHHHHHHHHhhhccCCcccEEEEe
Q 045156           76 ---FAL-FQVAELQWNRIVDDLSKEGKLRNCKAICDVSGSVHG---------TPLEVSVALGLLVSELSEEPWKGKLITF  142 (319)
Q Consensus        76 ---~~~-~~~~e~qW~~lv~~l~~~g~~~~~I~v~DvSGSM~g---------~p~dvaiaL~lllae~~~~~~~~~~ItF  142 (319)
                         .+. .+.++..-.....++.  ....++++++||||||.+         +++++|.+|++.+...+.   +..+++|
T Consensus       337 W~~~ar~~~al~~a~~~~~~~~~--~~~~~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la~~~~r~~d---~v~lv~F  411 (535)
T 2nvo_A          337 WLPVPRVVDALEEAFTLAFGNVQ--PANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMSLIALRTEP---DALTMGF  411 (535)
T ss_dssp             CCCCHHHHHHHHHHHHHHGGGCC--CCCSEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHHHHHHHHSS---EEEEEEE
T ss_pred             CcccHHHHHHHHHHHHHHhhcCC--CCCceEEEEEECCccccCCCCCCCCcccHHHHHHHHHHHHcCcCC---ceEEEEE
Confidence               011 1112222222222222  235678889999999975         468889999988776555   6799999


Q ss_pred             CCCceEEEec-CCCHHHHHHHhhcCCccccccHHHHHHHHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHH
Q 045156          143 GEKPELHLVE-GDDLKSKTRFVSNVNWDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQA  221 (319)
Q Consensus       143 s~~p~~~~l~-g~~l~ekv~~i~~~~~g~nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~  221 (319)
                      |+.+..+.+. ..++.+.++.+.... +++||+..+++.+    .+.+.    -++.||||||++||.+..    +.++ 
T Consensus       412 s~~~~~~~~~~~~~l~~~l~~l~~~~-~ggTdi~~~l~~a----~~~~~----~~~~vIliTD~~~~~g~~----~~~~-  477 (535)
T 2nvo_A          412 AEQFRPLGITPRDTLESAMQKAQSVS-FGGTDCAQPILWA----AQERL----DVDTFVVYTDNETWAGQV----HPTV-  477 (535)
T ss_dssp             BSSEEECCCCTTCCHHHHHHHTCCSS-BCCCCTTHHHHHH----HHTTC----CCSEEEEEESSCCCCCSS----CHHH-
T ss_pred             CCcceEcCCCcchhHHHHHHHHhhCC-CCCccHHHHHHHH----HHhcC----CCCEEEEEeCCCccCCCC----CHHH-
Confidence            9976555554 478989999886655 6799999996554    44332    368999999999997533    3344 


Q ss_pred             HHHHHHhcCCCCCCCeEEEEeCCCCCCCCcccCCCCeEEEeccCHHHHHHHHhC
Q 045156          222 IVRKYTEKGYGSAVPEIIFWNLRHSKSTPVPEGQEGVALVSGFSKILIKLFLEN  275 (319)
Q Consensus       222 i~~ky~~~Gy~~~~P~ivfWNl~~~~~~Pv~~~~~gv~LVSG~S~~i~k~~l~~  275 (319)
                      ..++|++.+..  -|++|+|++++++..|++..+.|+.+|+|||+++++.+-+-
T Consensus       478 al~~~r~~~~~--~~klv~i~l~~~~~~~~~~~~~~~~~i~g~se~~l~~Ia~~  529 (535)
T 2nvo_A          478 ALDQYAQKMGR--APKLIVVGLTATEFSIADPQRRDMLDVVGFDAAAPNVMTAF  529 (535)
T ss_dssp             HHHHHHHHHSC--CCEEEEEETTCSCCCCSCTTCSSEEEEEECCTTHHHHHHHH
T ss_pred             HHHHHHHhhCC--CCeEEEEeccCCCcccCCCCCCCceeeeCCCHHHHHHHHHH
Confidence            55889887555  59999999999999999889999999999999999998754
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A Back     alignment and structure
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} Back     alignment and structure
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* Back     alignment and structure
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} Back     alignment and structure
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C Back     alignment and structure
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A Back     alignment and structure
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A Back     alignment and structure
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A* Back     alignment and structure
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila} Back     alignment and structure
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G Back     alignment and structure
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A Back     alignment and structure
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ... Back     alignment and structure
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 Back     alignment and structure
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A Back     alignment and structure
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Back     alignment and structure
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A* Back     alignment and structure
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Back     alignment and structure
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Back     alignment and structure
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* Back     alignment and structure
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B* Back     alignment and structure
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} Back     alignment and structure
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B Back     alignment and structure
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus} Back     alignment and structure
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Back     alignment and structure
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B* Back     alignment and structure
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B* Back     alignment and structure
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Back     alignment and structure
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 319
d1yvra2174 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprot 3e-07
>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 174 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: RoRNP C-terminal domain-like
domain: 60-kda SS-A/Ro ribonucleoprotein, RoRNP
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 47.5 bits (112), Expect = 3e-07
 Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 19/165 (11%)

Query: 105 ICDVSGS----VHGTPLEVSVALGLLVSELSEEPWKGKLITFGEKPELHLVEGDDLKSKT 160
             DVS S    V G+ L  SV    +   ++       ++ F ++     +  + L  + 
Sbjct: 11  AIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDEMLPCPITVNMLLHEV 70

Query: 161 RFVSNVNWDMNTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQ 220
               +     +TD                 K         VF+D E +   +HP      
Sbjct: 71  VEKMSDITMGSTDCALPMLWAQ--------KTNTAADIFIVFTDCETNVEDVHPAT---- 118

Query: 221 AIVRKYTEKGYGSAVPEIIFWNLRHSKSTPVPEGQEGVALVSGFS 265
             +++Y EK       ++I   +  +  +       G+  + GF 
Sbjct: 119 -ALKQYREKMG--IPAKLIVCAMTSNGFSIADPDDRGMLDICGFD 160

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query319
d1yvra2174 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c 99.8
d1shux_181 Capillary morphogenesis protein 2 domain {Human (H 98.86
d1n3ya_189 Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI 98.27
d1q0pa_209 Complement factor B domain {Human (Homo sapiens) [ 98.22
d1atza_184 von Willebrand factor A3 domain, vWA3 {Human (Homo 98.17
d1jeyb2236 Ku80 subunit N-terminal domain {Human (Homo sapien 98.11
d1mjna_179 Integrin CD11a/CD18 (Leukocyte function associated 98.0
d1mf7a_194 Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub 97.99
d1jeya2220 Ku70 subunit N-terminal domain {Human (Homo sapien 97.81
d1v7pc_193 Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId 97.73
d1ijba_202 von Willebrand factor A1 domain, vWA1 {Human (Homo 97.66
d1pt6a_192 Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId 97.45
d1tyeb2248 Integrin beta A domain {Human (Homo sapiens) [TaxI 94.49
>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: RoRNP C-terminal domain-like
domain: 60-kda SS-A/Ro ribonucleoprotein, RoRNP
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.80  E-value=1.4e-19  Score=153.41  Aligned_cols=156  Identities=15%  Similarity=0.156  Sum_probs=117.1

Q ss_pred             CcceEEEEeCCCCCCC-------ChHHHHHHHHHHHhhhccCCcccEEEEeCCCceEEEec-CCCHHHHHHHhhcCCccc
Q 045156           99 LRNCKAICDVSGSVHG-------TPLEVSVALGLLVSELSEEPWKGKLITFGEKPELHLVE-GDDLKSKTRFVSNVNWDM  170 (319)
Q Consensus        99 ~~~~I~v~DvSGSM~g-------~p~dvaiaL~lllae~~~~~~~~~~ItFs~~p~~~~l~-g~~l~ekv~~i~~~~~g~  170 (319)
                      ..+.++++|+||||.+       ....+|.++++.....+   .+..+++|++.+..+.+. ..++.+.++.+.+.. |+
T Consensus         5 g~~~vl~iD~SGSM~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~vv~F~~~~~~~~~~~~~~~~~~~~~~~~~~-~g   80 (174)
T d1yvra2           5 GKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTE---KDSHMVAFSDEMLPCPITVNMLLHEVVEKMSDIT-MG   80 (174)
T ss_dssp             CCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHC---SSEEEEEESSSEECCSCCTTSCHHHHHHHHTTCC-CS
T ss_pred             CCeEEEEEECccccCCcccCccHHHHHHHHHHHHHhhccC---CcEEEEEecCCccccccCccchHHHHHHHhhccc-cc
Confidence            3578899999999964       23445554444443333   367999999988765554 467888777666554 56


Q ss_pred             cccHHHHHHHHHHHHHhCCCChhhccceEEEEecCccccccCCCCcchHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCCC
Q 045156          171 NTDFQEVFDLILEVAVNGNLKPEQMIKRLFVFSDMEFDEASLHPWETDYQAIVRKYTEKGYGSAVPEIIFWNLRHSKSTP  250 (319)
Q Consensus       171 nTnl~~vf~~IL~~A~k~~l~~e~mpk~v~V~SDmqFd~a~~~~w~t~~e~i~~ky~~~Gy~~~~P~ivfWNl~~~~~~P  250 (319)
                      +||+..+++.+++...        -.+.|+||||||++.+..     +-....++|+++...  .+++|+|++++++..|
T Consensus        81 gT~i~~al~~a~~~~~--------~~~~ivllTDg~~~~g~~-----~~~~~l~~y~~~~~~--~~~~~~i~l~~~g~~~  145 (174)
T d1yvra2          81 STDCALPMLWAQKTNT--------AADIFIVFTDCETNVEDV-----HPATALKQYREKMGI--PAKLIVCAMTSNGFSI  145 (174)
T ss_dssp             CCCTTHHHHHHHHTTC--------CCSEEEEEECCCCCSSSC-----CHHHHHHHHHHHHTC--CCEEEEEECSSSSEES
T ss_pred             cccHHHHHHHHHhhhc--------cCCEEEEEeCCCccCCCC-----CHHHHHHHHHHHcCC--CcEEEEEECcCCCCcc
Confidence            8999999987765422        246799999999986532     334456678887777  7999999999988778


Q ss_pred             cccCCCCeEEEeccCHHHHHHHH
Q 045156          251 VPEGQEGVALVSGFSKILIKLFL  273 (319)
Q Consensus       251 v~~~~~gv~LVSG~S~~i~k~~l  273 (319)
                      ...+++|+..++|||+++++++-
T Consensus       146 ~~~~~~~~~~i~Gfs~~~~~~i~  168 (174)
T d1yvra2         146 ADPDDRGMLDICGFDSGALDVIR  168 (174)
T ss_dssp             SCTTCTTEEEEETTCTTHHHHHH
T ss_pred             cCCCCCCcEEEecCCHHHHHHHH
Confidence            88899999999999999999763
>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure