Citrus Sinensis ID: 045158

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
Protein Sequence
MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPFLQSSFNQHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGGY
Secondary Structure (PSIPRED)
cEEEEEEcccEEEEEEcccccHHHHHHHHHHHHcccccccEEEEccEEEccccccccccccccccEEEccccccccccccccccEEEEEEEcccEEEEccccccHHHHHHHHHHHHHccccccEEEEEcccEEccccccccccccccccEEEEEEEEcccccccccccccccEEEEEEEccccccEEEEEccccHHHHHHHHHHHccccccccEEEEEccEEEcccccccccccccccEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEcccEEEEEEccccHHHHHHHHHHHHccccHcHEEEEEcccEccccccccHccccccccEEEEEEcccccccccccccEEEEEEEccEEEEEEEcccccHHHHHHHHHHHccccHcHEEEEEcccccccccccHHHcccccccEEEEEEEcccccccccccccccccEEEEEEEccccEEEEEEcccccHHHHHHHHHHcccccHcHEEEEEcccEccccccHHHcccccccEEEEEEEEEEcccc
Coil and Loop (DISEMBL)
MRIIIVANGHEFVLevglqepvLEIKRKIEQifnipatsqtlAVSGwelvdgldmedypivkegtkidltinpflqssfnqhdkIHIIikfpsrkfnidvdrtDTVRSLKEKihiidgtpiKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMnrlrdnppirrlsfkvqtsssllngasiplemqdsstVNELRHLLLSskilpredyifihkqrimrdncslrwhgveygDILYVFKgtvsrggy
Flexible Loop (DISEMBL)
mriiivanghefvlevgLQEPVLEIKRKIEQIfnipatsqtlaVSGWELVDGLDMEDYPIVKEGTKIDLTINPFLQSSFNQHDKIHIIikfpsrkfnidvdrtdtvrslkekihiidgtpikrMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLlsskilpredYIFIHKQRIMRDNCSLRWHGVEYGDILYVFkgtvsrggy
Low Complexity Region (SEG)
MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPFLQSSFNQHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGGY
Disordered region (IsUnstruct)
**IIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPFLQSSFNQHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDNPPIRRLSF***********************VNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTV*****
Disordered Region (DISOPRED)
MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPFLQSSFNQHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRG**
Disordered Region (DISEMBL)
MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPFLQSSFNQHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGGY
Disordered Region (DISPRO)
MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPFLQSSFNQHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRG**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPFLQSSFNQHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGGY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	252	2.2.26 [Sep-21-2011]
P42739	423	Polyubiquitin (Fragment)	N/A	no	0.841	0.501	0.262	1e-12
P0CG70	305	Polyubiquitin OS=Neurospo	N/A	no	0.841	0.695	0.25	4e-12
Q8MKD1	305	Polyubiquitin-B OS=Equus	yes	no	0.841	0.695	0.254	7e-12
P0CG73	229	Polyubiquitin OS=Candida	N/A	no	0.873	0.960	0.252	9e-12
P0CG71	838	Polyubiquitin-A OS=Caenor	yes	no	0.841	0.252	0.25	2e-11
P59669	457	Polyubiquitin OS=Geodia c	N/A	no	0.841	0.463	0.25	2e-11
P0CG63	381	Polyubiquitin OS=Saccharo	yes	no	0.841	0.556	0.25	2e-11
P0CG74	305	Polyubiquitin OS=Candida	N/A	no	0.841	0.695	0.25	2e-11
P0CG55	305	Polyubiquitin-B OS=Ovis a	N/A	no	0.841	0.695	0.25	2e-11
P0CG72	382	Polyubiquitin OS=Schizosa	yes	no	0.841	0.554	0.25	2e-11

>sp|P42739|UBIQP_ACECL Polyubiquitin (Fragment) OS=Acetabularia cliftonii PE=3 SV=2

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 106/236 (44%), Gaps = 24/236 (10%)

Query: 8   NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKI 67
            G    LEV   + V  +K KI+    IP   Q L  +G +L DGL + DY I KE T  
Sbjct: 50  TGKTITLEVQSSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGLTLADYNIQKEST-- 107

Query: 68  DLTINPFLQSSFNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLL 126
                  L         + I +K    +   ++V+ +DTV ++K KI   +G P  +  L
Sbjct: 108 -------LHLVLRLRGGMQIFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRL 160

Query: 127 FFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASI 186
            F+G +L+D  R L++Y I++ S + + L             RL   +Q     L G +I
Sbjct: 161 IFAGKQLED-GRTLADYNIQKESTLHLVL-------------RLRGGMQIFVKTLTGKTI 206

Query: 187 PLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYV 242
            LE++ S TV  ++  +   + +P +    I   + + D  +L  + ++    L++
Sbjct: 207 TLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 262

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.
Acetabularia cliftonii (taxid: 35862)

>sp|P0CG70|UBI4P_NEUCR Polyubiquitin OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ubi-4 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 108/236 (45%), Gaps = 24/236 (10%)

Query: 8   NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKI 67
            G    LEV   + +  +K+KI+    IP   Q L  +G +L DG  + DY I KE T  
Sbjct: 9   TGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-- 66

Query: 68  DLTINPFLQSSFNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLL 126
                  L         + I +K    +   ++V+ +DT+ ++K+KI   +G P  +  L
Sbjct: 67  -------LHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRL 119

Query: 127 FFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASI 186
            F+G +L+D  R LS+Y I++ S + + L             RL   +Q     L G +I
Sbjct: 120 IFAGKQLED-GRTLSDYNIQKESTLHLVL-------------RLRGGMQIFVKTLTGKTI 165

Query: 187 PLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYV 242
            LE++ S T++ ++  +   + +P +    I   + + D  +L  + ++    L++
Sbjct: 166 TLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 221

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q8MKD1|UBB_HORSE Polyubiquitin-B OS=Equus caballus GN=UBB PE=2 SV=3

 Score = 71.2 bits (173), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 106/236 (44%), Gaps = 24/236 (10%)

Query: 8   NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKI 67
            G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY I KE T  
Sbjct: 9   TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-- 66

Query: 68  DLTINPFLQSSFNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLL 126
                  L         + I +K    +   ++V+ +DT+ ++K KI   +G P  +  L
Sbjct: 67  -------LHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRL 119

Query: 127 FFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASI 186
            F+G +L+D  R LS+Y I++ S + + L             RL   +Q     L G +I
Sbjct: 120 IFAGKQLED-GRTLSDYNIQKESTLHLVL-------------RLRGGMQIFVKTLTGKTI 165

Query: 187 PLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYV 242
            LE++ S T+  ++  +   + +P +   FI   + + D  +L  + ++    L++
Sbjct: 166 TLEVEPSDTIENVKAKIQDKEGIPPDQQRFIFAGKQLEDGRTLSDYNIQKESTLHL 221

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Equus caballus (taxid: 9796)

>sp|P0CG73|UBI1P_CANAX Polyubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 110/246 (44%), Gaps = 26/246 (10%)

Query: 8   NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKI 67
            G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY I KE T  
Sbjct: 9   TGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-- 66

Query: 68  DLTINPFLQSSFNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLL 126
                  L         + I +K    +   ++V+ +DT+ ++K KI   +G P  +  L
Sbjct: 67  -------LHLVLRSRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRL 119

Query: 127 FFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASI 186
            F+G +L+D  R LS+Y I++ S + + L             RL   +Q     L G +I
Sbjct: 120 IFAGKQLED-GRTLSDYNIQKESTLHLVL-------------RLRGGMQIFVKTLTGKTI 165

Query: 187 PLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGT 246
            LE++ S T++ ++  +   + +P +    I   + + D  +L  + ++    L++    
Sbjct: 166 TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV--L 223

Query: 247 VSRGGY 252
             RGG+
Sbjct: 224 RLRGGF 229

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Candida albicans (taxid: 5476)

>sp|P0CG71|UBIQ1_CAEEL Polyubiquitin-A OS=Caenorhabditis elegans GN=ubq-1 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 105/236 (44%), Gaps = 24/236 (10%)

Query: 8   NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKI 67
            G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY I KE T  
Sbjct: 9   TGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-- 66

Query: 68  DLTINPFLQSSFNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLL 126
                  L         + I +K    +   ++V+ +DT+ ++K KI   +G P  +  L
Sbjct: 67  -------LHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 119

Query: 127 FFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASI 186
            F+G +L+D  R LS+Y I++ S + + L             RL   +Q     L G +I
Sbjct: 120 IFAGKQLED-GRTLSDYNIQKESTLHLVL-------------RLRGGMQIFVKTLTGKTI 165

Query: 187 PLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYV 242
            LE++ S T+  ++  +   + +P +    I   + + D  +L  + ++    L++
Sbjct: 166 TLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 221

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Caenorhabditis elegans (taxid: 6239)

>sp|P59669|UBIQP_GEOCY Polyubiquitin OS=Geodia cydonium PE=2 SV=2

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 105/236 (44%), Gaps = 24/236 (10%)

Query: 8   NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKI 67
            G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY I KE T  
Sbjct: 9   TGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-- 66

Query: 68  DLTINPFLQSSFNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLL 126
                  L         + I +K    +   ++V+ +DT+ ++K KI   +G P  +  L
Sbjct: 67  -------LHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 119

Query: 127 FFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASI 186
            F+G +L+D  R LS+Y I++ S + + L             RL   +Q     L G +I
Sbjct: 120 IFAGKQLED-GRTLSDYNIQKESTLHLVL-------------RLRGGMQIFVKTLTGKTI 165

Query: 187 PLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYV 242
            LE++ S T+  ++  +   + +P +    I   + + D  +L  + ++    L++
Sbjct: 166 TLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 221

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Geodia cydonium (taxid: 6047)

>sp|P0CG63|UBI4P_YEAST Polyubiquitin OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBI4 PE=1 SV=1

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 106/236 (44%), Gaps = 24/236 (10%)

Query: 8   NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKI 67
            G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY I KE T  
Sbjct: 9   TGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-- 66

Query: 68  DLTINPFLQSSFNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLL 126
                  L         + I +K    +   ++V+ +DT+ ++K KI   +G P  +  L
Sbjct: 67  -------LHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRL 119

Query: 127 FFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASI 186
            F+G +L+D  R LS+Y I++ S + + L             RL   +Q     L G +I
Sbjct: 120 IFAGKQLED-GRTLSDYNIQKESTLHLVL-------------RLRGGMQIFVKTLTGKTI 165

Query: 187 PLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYV 242
            LE++ S T++ ++  +   + +P +    I   + + D  +L  + ++    L++
Sbjct: 166 TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 221

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P0CG74|UBI4P_CANAX Polyubiquitin OS=Candida albicans GN=UBI4 PE=1 SV=1

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 106/236 (44%), Gaps = 24/236 (10%)

Query: 8   NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKI 67
            G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY I KE T  
Sbjct: 9   TGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-- 66

Query: 68  DLTINPFLQSSFNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLL 126
                  L         + I +K    +   ++V+ +DT+ ++K KI   +G P  +  L
Sbjct: 67  -------LHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRL 119

Query: 127 FFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASI 186
            F+G +L+D  R LS+Y I++ S + + L             RL   +Q     L G +I
Sbjct: 120 IFAGKQLED-GRTLSDYNIQKESTLHLVL-------------RLRGGMQIFVKTLTGKTI 165

Query: 187 PLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYV 242
            LE++ S T++ ++  +   + +P +    I   + + D  +L  + ++    L++
Sbjct: 166 TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 221

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Candida albicans (taxid: 5476)

>sp|P0CG55|UBB_SHEEP Polyubiquitin-B OS=Ovis aries GN=UBB PE=2 SV=1

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 105/236 (44%), Gaps = 24/236 (10%)

Query: 8   NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKI 67
            G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY I KE T  
Sbjct: 9   TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-- 66

Query: 68  DLTINPFLQSSFNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLL 126
                  L         + I +K    +   ++V+ +DT+ ++K KI   +G P  +  L
Sbjct: 67  -------LHLVLRMRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRL 119

Query: 127 FFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASI 186
            F+G +L+D  R LS+Y I++ S + + L             RL   +Q     L G +I
Sbjct: 120 IFAGKQLED-GRTLSDYNIQKESTLHLVL-------------RLRGGMQIFVKTLTGKTI 165

Query: 187 PLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYV 242
            LE++ S T+  ++  +   + +P +    I   + + D  +L  + ++    L++
Sbjct: 166 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 221

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Ovis aries (taxid: 9940)

>sp|P0CG72|UBI4P_SCHPO Polyubiquitin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubi4 PE=1 SV=1

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 106/236 (44%), Gaps = 24/236 (10%)

Query: 8   NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKI 67
            G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY I KE T  
Sbjct: 9   TGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-- 66

Query: 68  DLTINPFLQSSFNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLL 126
                  L         + I +K    +   ++V+ +DT+ ++K KI   +G P  +  L
Sbjct: 67  -------LHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRL 119

Query: 127 FFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASI 186
            F+G +L+D  R LS+Y I++ S + + L             RL   +Q     L G +I
Sbjct: 120 IFAGKQLED-GRTLSDYNIQKESTLHLVL-------------RLRGGMQIFVKTLTGKTI 165

Query: 187 PLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYV 242
            LE++ S T++ ++  +   + +P +    I   + + D  +L  + ++    L++
Sbjct: 166 TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 221

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
224132636	250	predicted protein [Populus trichocarpa]	0.992	1.0	0.716	1e-103
255577723	255	protein binding protein, putative [Ricin	1.0	0.988	0.729	1e-102
356547071	249	PREDICTED: polyubiquitin-like [Glycine m	0.984	0.995	0.714	6e-99
225447320	252	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.686	1e-97
357453489	252	hypothetical protein MTR_2g088760 [Medic	0.996	0.996	0.690	2e-93
356542098	268	PREDICTED: LOW QUALITY PROTEIN: polyubiq	0.948	0.891	0.687	2e-89
297789844	242	hypothetical protein ARALYDRAFT_359335 [	0.948	0.987	0.607	1e-84
145360542	242	ubiquitin-like domain-containing protein	0.948	0.987	0.595	1e-84
3831461	233	hypothetical protein [Arabidopsis thalia	0.912	0.987	0.574	5e-79
449453682	251	PREDICTED: polyubiquitin-like [Cucumis s	0.984	0.988	0.570	1e-73

>gi|224132636|ref|XP_002327844.1| predicted protein [Populus trichocarpa] gi|222837253|gb|EEE75632.1| predicted protein [Populus trichocarpa]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/250 (71%), Positives = 215/250 (86%)

Query: 1   MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPI 60
           M++IIVA   EF+LE+GLQ+PVL+IKR+I+Q+  +P T+Q LAVSGWELVDGLDMEDYPI
Sbjct: 1   MKVIIVAGAREFLLEIGLQDPVLDIKRRIQQLVGVPVTAQILAVSGWELVDGLDMEDYPI 60

Query: 61  VKEGTKIDLTINPFLQSSFNQHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTP 120
           V +GT+I+LTI P + +  +    I II+KF +R+ NI+VDRTDTVRSLKEKIHI DGTP
Sbjct: 61  VIDGTRIELTIKPMMPAFSSYCGMIQIIVKFSARQINIEVDRTDTVRSLKEKIHIFDGTP 120

Query: 121 IKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSL 180
           IKRM LFFSG+ELD++FRNLSEYGI EFSEI+VFLKTM R+RD+PP R+LS  VQTSS L
Sbjct: 121 IKRMSLFFSGVELDEDFRNLSEYGIHEFSEIVVFLKTMTRIRDDPPSRKLSIVVQTSSCL 180

Query: 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDIL 240
           LN A IPLEM+DSSTVN++R LLLS KILP++DY+FIHKQRIMRD+CSLRWHGV+ GD L
Sbjct: 181 LNAACIPLEMKDSSTVNDMRQLLLSRKILPQDDYLFIHKQRIMRDSCSLRWHGVDNGDSL 240

Query: 241 YVFKGTVSRG 250
           YVFKGTVSR 
Sbjct: 241 YVFKGTVSRS 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577723|ref|XP_002529737.1| protein binding protein, putative [Ricinus communis] gi|223530778|gb|EEF32644.1| protein binding protein, putative [Ricinus communis]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/255 (72%), Positives = 214/255 (83%), Gaps = 3/255 (1%)

Query: 1   MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPI 60
           MR++IVA   EF +EVG QEPVLEIK KIE +  +   +QTL++ GWELVDGLDMEDYPI
Sbjct: 1   MRVMIVAWAREFPIEVGHQEPVLEIKSKIELLLGVSVAAQTLSIFGWELVDGLDMEDYPI 60

Query: 61  VKEGTKIDLTI---NPFLQSSFNQHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIID 117
           V EGTKIDLTI   NP L ++ N   KI II+KF SR+ NI+VD TDT+RSLKEKIHI+D
Sbjct: 61  VTEGTKIDLTIEPMNPLLFNNGNDTRKIQIIVKFSSRQINIEVDTTDTIRSLKEKIHIVD 120

Query: 118 GTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTS 177
           GTPIKR+ LFFSGIELD++FRNLSEYGIREFSEIIVFLKTM+RLRD P  R+LS  VQTS
Sbjct: 121 GTPIKRLSLFFSGIELDEDFRNLSEYGIREFSEIIVFLKTMSRLRDEPCTRKLSITVQTS 180

Query: 178 SSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYG 237
           SSLLN A+IPLEM+DSST+++LR LLLS K+LP +DY+FIHKQRIMRDNCSLRWHGVE G
Sbjct: 181 SSLLNAAAIPLEMKDSSTISDLRRLLLSRKVLPLDDYLFIHKQRIMRDNCSLRWHGVENG 240

Query: 238 DILYVFKGTVSRGGY 252
           D LYVFKGTVS  GY
Sbjct: 241 DSLYVFKGTVSHNGY 255

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547071|ref|XP_003541941.1| PREDICTED: polyubiquitin-like [Glycine max]

 Score =  366 bits (939), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 180/252 (71%), Positives = 206/252 (81%), Gaps = 4/252 (1%)

Query: 1   MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPI 60
           MR+ IV   ++F +EVG QE V  IKRKIEQI  IP  SQ L VSGWEL+DGLDMEDYPI
Sbjct: 1   MRVAIVTRTNQFFIEVGTQETVAAIKRKIEQILGIPVPSQILTVSGWELLDGLDMEDYPI 60

Query: 61  VKEGTKIDLTINPFLQSSFNQHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTP 120
           V EGTKIDLTI P          K+ I +KF +RKFNI+VDRTDTVRSLKEKIHIID TP
Sbjct: 61  VTEGTKIDLTIKPVEP----HPSKMQITVKFSARKFNIEVDRTDTVRSLKEKIHIIDSTP 116

Query: 121 IKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSL 180
           IKRM L+FSG ELD++FR LSEYGIREFSEI+VFLK +NR R+ PP R+LS  VQTSSSL
Sbjct: 117 IKRMTLYFSGRELDEDFRILSEYGIREFSEIVVFLKPLNRSREEPPTRKLSLVVQTSSSL 176

Query: 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDIL 240
           LNGA+IPLEM+D+STV++L+ LL+S KILP +DY+FIHKQRIMRD+CSLRWHGVE GD L
Sbjct: 177 LNGATIPLEMRDASTVSDLKQLLISRKILPVDDYLFIHKQRIMRDSCSLRWHGVEDGDCL 236

Query: 241 YVFKGTVSRGGY 252
           YVFKGTVSR GY
Sbjct: 237 YVFKGTVSRSGY 248

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447320|ref|XP_002274095.1| PREDICTED: uncharacterized protein LOC100243083 [Vitis vinifera] gi|297739303|emb|CBI28954.3| unnamed protein product [Vitis vinifera]

 Score =  362 bits (928), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 173/252 (68%), Positives = 207/252 (82%)

Query: 1   MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPI 60
           MR+II     EF +++GLQEPVLEIK KIEQ+  +P   QTL+VSGWEL+DGLDMEDYPI
Sbjct: 1   MRVIITTRTCEFSIDIGLQEPVLEIKHKIEQLHGVPVALQTLSVSGWELMDGLDMEDYPI 60

Query: 61  VKEGTKIDLTINPFLQSSFNQHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTP 120
           V EGT+IDL           +  KI IIIKF +R+ +I+VDRT+TV SLKEKIHII+GTP
Sbjct: 61  VTEGTRIDLMTKHIEHYPLARCSKIQIIIKFSARQISIEVDRTETVGSLKEKIHIIEGTP 120

Query: 121 IKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSL 180
           IKRM+L+FSG E++++FRNLSEYGIREFSEIIVFLK +NR RD PP+R+L+  VQTSSSL
Sbjct: 121 IKRMILYFSGTEMEEDFRNLSEYGIREFSEIIVFLKALNRTRDQPPVRKLNVVVQTSSSL 180

Query: 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDIL 240
           LN A IPLE++D  TV+ELR LLL+ KILPR+DY+FIHKQRIMRDNCSLRWHGVE GD L
Sbjct: 181 LNSACIPLELRDMDTVHELRQLLLARKILPRDDYLFIHKQRIMRDNCSLRWHGVEDGDSL 240

Query: 241 YVFKGTVSRGGY 252
           YVF+GTVSR G+
Sbjct: 241 YVFRGTVSRNGF 252

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453489|ref|XP_003597022.1| hypothetical protein MTR_2g088760 [Medicago truncatula] gi|355486070|gb|AES67273.1| hypothetical protein MTR_2g088760 [Medicago truncatula]

 Score =  347 bits (891), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 174/252 (69%), Positives = 203/252 (80%), Gaps = 1/252 (0%)

Query: 1   MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPI 60
           MRIII    ++F +EVG  E VLEIKRKIEQI  IP   Q L V G+EL+DGLDMEDYPI
Sbjct: 1   MRIIIATEINQFFIEVGTLETVLEIKRKIEQIHAIPVAYQILTVCGFELLDGLDMEDYPI 60

Query: 61  VKEGTKIDLTINPFLQSSFNQHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTP 120
           V EGTKIDLTI P      +  +K+ I +KF +R  NI+VD+TDTV SLKEKIHIID TP
Sbjct: 61  VSEGTKIDLTIKPMEPHIIHHPNKMQITVKFSARLINIEVDKTDTVHSLKEKIHIIDNTP 120

Query: 121 IKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSL 180
           IK M LFF G EL+++FRNL+EYGIREFSEIIVFLKT NR ++ PP R+LSF +QTSSSL
Sbjct: 121 IKSMKLFFLGRELNEDFRNLNEYGIREFSEIIVFLKTTNRTKE-PPTRKLSFVLQTSSSL 179

Query: 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDIL 240
           LN A+IPLEM+D+STVN+L+ LLLS KILP +DY+FIH+QRIMRD+CSLRWHGVE GD L
Sbjct: 180 LNAATIPLEMKDTSTVNDLKQLLLSRKILPVDDYLFIHRQRIMRDSCSLRWHGVENGDQL 239

Query: 241 YVFKGTVSRGGY 252
           YVFKGTVSR GY
Sbjct: 240 YVFKGTVSRSGY 251

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542098|ref|XP_003539508.1| PREDICTED: LOW QUALITY PROTEIN: polyubiquitin-like [Glycine max]

 Score =  334 bits (857), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 167/243 (68%), Positives = 194/243 (79%), Gaps = 4/243 (1%)

Query: 10  HEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDL 69
           ++F +EVG QE V  IKRKIE+I  IP  SQ L VSGWEL+DGL MEDYPIV EGTK+DL
Sbjct: 29  NQFFIEVGTQETVAAIKRKIEKIHGIPVPSQILTVSGWELLDGLGMEDYPIVTEGTKVDL 88

Query: 70  TINPFLQSSFNQHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFS 129
           TI P         +K+ I  KF +RKF+I+VDRTDTVRSLKEKIHIID T IKRM L+FS
Sbjct: 89  TIKPVEP----HPNKMQITEKFSARKFDIEVDRTDTVRSLKEKIHIIDSTLIKRMTLYFS 144

Query: 130 GIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASIPLE 189
           G ELD++FR LSEYGIR FSEI VF K +NR R+ PP R+LS  VQTSSSLLN A+IPLE
Sbjct: 145 GRELDEDFRILSEYGIRGFSEIAVFXKPLNRSREEPPTRKLSLVVQTSSSLLNAATIPLE 204

Query: 190 MQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSR 249
           M+D+STV +L+ LL+S KILP +DY+FIHKQRIMRD+CSLRWHG+E GD LYVFKGTVSR
Sbjct: 205 MRDASTVGDLKQLLISRKILPVDDYLFIHKQRIMRDSCSLRWHGIENGDCLYVFKGTVSR 264

Query: 250 GGY 252
            GY
Sbjct: 265 SGY 267

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297789844|ref|XP_002862849.1| hypothetical protein ARALYDRAFT_359335 [Arabidopsis lyrata subsp. lyrata] gi|297308597|gb|EFH39107.1| hypothetical protein ARALYDRAFT_359335 [Arabidopsis lyrata subsp. lyrata]

 Score =  318 bits (815), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 147/242 (60%), Positives = 196/242 (80%), Gaps = 3/242 (1%)

Query: 14  LEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINP 73
           +E+  QE VLE+K+++ Q   IPA+S TL VS WEL+DGLD+EDYPI+  GT+IDLT+ P
Sbjct: 1   MEISEQESVLEVKKRLGQFLQIPASSLTLFVSCWELIDGLDIEDYPIISHGTRIDLTVTP 60

Query: 74  -FLQSSFNQHD--KIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSG 130
            F   SF      KIH+ +KFPS++F ++VDRT+TV SLK+KIHI++ TPIKRM L++SG
Sbjct: 61  LFTAPSFINPAIRKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSG 120

Query: 131 IELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASIPLEM 190
           IEL D++RNL+EYGI EFSEI+VFLK++NR +D  P+R+L F VQTSSSL NGA IP+E+
Sbjct: 121 IELADDYRNLNEYGISEFSEIVVFLKSINRAKDVAPVRKLCFLVQTSSSLFNGARIPVEI 180

Query: 191 QDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRG 250
           +D+ T++E+R  L ++K LPR++YIF+HKQRIMR+NCSLRWHGVE  D L+VFKG++SR 
Sbjct: 181 KDTCTISEMREGLQANKTLPRDEYIFVHKQRIMRENCSLRWHGVENCDTLFVFKGSISRE 240

Query: 251 GY 252
           GY
Sbjct: 241 GY 242

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145360542|ref|NP_180794.2| ubiquitin-like domain-containing protein [Arabidopsis thaliana] gi|330253578|gb|AEC08672.1| ubiquitin-like domain-containing protein [Arabidopsis thaliana]

 Score =  318 bits (815), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 144/242 (59%), Positives = 195/242 (80%), Gaps = 3/242 (1%)

Query: 14  LEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINP 73
           +E+  QE VLE+K+++ Q   IP +S TL VS WEL+DGLD+EDYPI+  GT+IDLT+ P
Sbjct: 1   MEISEQESVLEVKKRLGQFLQIPTSSITLFVSCWELIDGLDIEDYPIISHGTRIDLTVTP 60

Query: 74  FLQSSFNQHD---KIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSG 130
              +    H    KIH+ +KFPS++F ++VDRT+TV SLK+KIHI++ TPIKRM L++SG
Sbjct: 61  LFTAPSFIHAAVRKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSG 120

Query: 131 IELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASIPLEM 190
           IEL D++RNL+EYGI EFSEI+VFLK++NR +D  P+R+L F VQTSSSL NGA IP+E+
Sbjct: 121 IELADDYRNLNEYGITEFSEIVVFLKSINRAKDVAPVRKLCFLVQTSSSLFNGARIPVEI 180

Query: 191 QDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRG 250
           +D+ T++E+R  L ++K LPR++YIF+HKQRIMR+NCSLRWHGVE GD L+VFKG++SR 
Sbjct: 181 KDTCTISEMREGLQANKTLPRDEYIFVHKQRIMRENCSLRWHGVENGDTLFVFKGSISRE 240

Query: 251 GY 252
           G+
Sbjct: 241 GF 242

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3831461|gb|AAC69943.1| hypothetical protein [Arabidopsis thaliana]

 Score =  300 bits (767), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 139/242 (57%), Positives = 188/242 (77%), Gaps = 12/242 (4%)

Query: 14  LEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINP 73
           +E+  QE VLE+K+++ Q   IP +S TL VS WEL+DGLD+EDYPI+  GT+IDLT+ P
Sbjct: 1   MEISEQESVLEVKKRLGQFLQIPTSSITLFVSCWELIDGLDIEDYPIISHGTRIDLTVTP 60

Query: 74  FLQSSFNQHD---KIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSG 130
              +    H    KIH+ +KFPS++F ++VDRT+TV SLK+KIHI++ TPIKRM L++SG
Sbjct: 61  LFTAPSFIHAAVRKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSG 120

Query: 131 IELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASIPLEM 190
           IEL D++RNL+EYGI EFSEI+VFLK++NR +D  P         TSSSL NGA IP+E+
Sbjct: 121 IELADDYRNLNEYGITEFSEIVVFLKSINRAKDVAP---------TSSSLFNGARIPVEI 171

Query: 191 QDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRG 250
           +D+ T++E+R  L ++K LPR++YIF+HKQRIMR+NCSLRWHGVE GD L+VFKG++SR 
Sbjct: 172 KDTCTISEMREGLQANKTLPRDEYIFVHKQRIMRENCSLRWHGVENGDTLFVFKGSISRE 231

Query: 251 GY 252
           G+
Sbjct: 232 GF 233

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453682|ref|XP_004144585.1| PREDICTED: polyubiquitin-like [Cucumis sativus]

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 145/254 (57%), Positives = 193/254 (75%), Gaps = 6/254 (2%)

Query: 1   MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDY-P 59
           M+I IV  GHEF +++  QE ++EIKRKIEQ   IP  SQTL+V G EL+DGL MEDY  
Sbjct: 1   MKIFIVTMGHEFPIDIENQEQIIEIKRKIEQFIGIPIESQTLSVYGCELLDGLVMEDYDQ 60

Query: 60  IVKEGTKIDLTINPFLQSSFNQHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGT 119
            + EG++IDL+++  +  S    ++  I ++F  ++ NI++D+T+TV SLK+KI II   
Sbjct: 61  FITEGSRIDLSVDQIIAPS----NEFPIAVEFSGQRININIDKTETVHSLKQKIQIIYSL 116

Query: 120 PIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNR-LRDNPPIRRLSFKVQTSS 178
           PI+ M LF SG+EL ++ +NLSE+GI EFSE+IVF+KTM+R L ++   R++SF V+ SS
Sbjct: 117 PIQTMSLFHSGMELVEDCQNLSEFGIGEFSEVIVFMKTMSRYLSEDSSRRKVSFVVEMSS 176

Query: 179 SLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGD 238
           SLLN A IP+EM+DSSTVN++R LLLS KILP ++Y+FIHKQRIMRD  SLRWHGVE GD
Sbjct: 177 SLLNAACIPMEMKDSSTVNDVRELLLSGKILPDDEYLFIHKQRIMRDKRSLRWHGVENGD 236

Query: 239 ILYVFKGTVSRGGY 252
            LYVFKGTVSRG +
Sbjct: 237 FLYVFKGTVSRGEF 250

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
TAIR|locus:2062566	242	AT2G32350 "AT2G32350" [Arabido	0.948	0.987	0.603	6.8e-79
TAIR|locus:2115653	206	AT4G05230 "AT4G05230" [Arabido	0.428	0.524	0.333	4.5e-18
UNIPROTKB|J3QKN0	206	UBB "Ubiquitin" [Homo sapiens	0.777	0.951	0.255	8.6e-12
UNIPROTKB|F5GXK7	169	UBC "Polyubiquitin-C" [Homo sa	0.579	0.863	0.297	1.1e-11
UNIPROTKB|F1NGE3	157	UBB "Polyubiquitin-B" [Gallus	0.579	0.929	0.297	1.5e-11
UNIPROTKB|Q91021	157	UBB "Ubiquitin" [Gallus gallus	0.579	0.929	0.297	1.5e-11
UNIPROTKB|F5H265	149	UBC "Polyubiquitin-C" [Homo sa	0.579	0.979	0.297	1.5e-11
UNIPROTKB|F5H388	155	UBC "Polyubiquitin-C" [Homo sa	0.579	0.941	0.297	1.5e-11
UNIPROTKB|F5H747	161	UBC "Polyubiquitin-C" [Homo sa	0.579	0.906	0.297	1.5e-11
UNIPROTKB|F5H7Y5	153	UBC "Polyubiquitin-C" [Homo sa	0.579	0.954	0.297	1.5e-11

TAIR|locus:2062566 AT2G32350 "AT2G32350" [Arabidopsis thaliana (taxid:3702)]

 Score = 793 (284.2 bits), Expect = 6.8e-79, P = 6.8e-79
 Identities = 146/242 (60%), Positives = 196/242 (80%)

Query:    14 LEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINP 73
             +E+  QE VLE+K+++ Q   IP +S TL VS WEL+DGLD+EDYPI+  GT+IDLT+ P
Sbjct:     1 MEISEQESVLEVKKRLGQFLQIPTSSITLFVSCWELIDGLDIEDYPIISHGTRIDLTVTP 60

Query:    74 -FLQSSFNQHD--KIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSG 130
              F   SF      KIH+ +KFPS++F ++VDRT+TV SLK+KIHI++ TPIKRM L++SG
Sbjct:    61 LFTAPSFIHAAVRKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSG 120

Query:   131 IELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASIPLEM 190
             IEL D++RNL+EYGI EFSEI+VFLK++NR +D  P+R+L F VQTSSSL NGA IP+E+
Sbjct:   121 IELADDYRNLNEYGITEFSEIVVFLKSINRAKDVAPVRKLCFLVQTSSSLFNGARIPVEI 180

Query:   191 QDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRG 250
             +D+ T++E+R  L ++K LPR++YIF+HKQRIMR+NCSLRWHGVE GD L+VFKG++SR 
Sbjct:   181 KDTCTISEMREGLQANKTLPRDEYIFVHKQRIMRENCSLRWHGVENGDTLFVFKGSISRE 240

Query:   251 GY 252
             G+
Sbjct:   241 GF 242

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2115653 AT4G05230 "AT4G05230" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 4.5e-18, Sum P(2) = 4.5e-18
 Identities = 39/117 (33%), Positives = 57/117 (48%)

Query:   139 NLSEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASIPLEMQDSSTVNE 198
             N +E       E  V +   N   +N P ++L   V   S       IP+++     V E
Sbjct:    93 NSTEQTSNGHHESTVMIPMSNNNNNNNP-KKLRVMVLPKSGT---RKIPVDVNAGDNVGE 148

Query:   199 LRHLL--LSSKI---LPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRG 250
             LR  L  +  +    LP+E Y FI+KQ +M +N S RWH V+ GD + +F G+VS G
Sbjct:   149 LRKELAKIQQRFQLSLPQEGYFFIYKQNVMDENRSFRWHRVDQGDTIEIFNGSVSGG 205

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006289 "nucleotide-excision repair" evidence=IEA

UNIPROTKB|J3QKN0 UBB "Ubiquitin" [Homo sapiens (taxid:9606)]

 Score = 160 (61.4 bits), Expect = 8.6e-12, P = 8.6e-12
 Identities = 55/215 (25%), Positives = 105/215 (48%)

Query:     1 MRIII-VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYP 59
             M+I +    G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY 
Sbjct:     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query:    60 IVKEGTKIDLTINPFLQSSFNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDG 118
             I KE T + L +   L+        + I +K    +   ++V+ +DT+ ++K KI   +G
Sbjct:    61 IQKEST-LHLVLR--LRGG------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG 111

Query:   119 TPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLR---DNPPIRRLSFKVQ 175
              P  +  L F+G +L+D  R LS+Y I++ S + + L+    ++        + ++ +V+
Sbjct:   112 IPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE 170

Query:   176 TSSSLLNGASIPLEMQDSSTVN-ELRHLLLSSKIL 209
              S ++ N   +  ++QD   +  + + L+ + K L
Sbjct:   171 PSDTIEN---VKAKIQDKEGIPPDQQRLIFAGKQL 202

GO:0007141 "male meiosis I" evidence=IEA

GO:0007144 "female meiosis I" evidence=IEA

GO:0008585 "female gonad development" evidence=IEA

GO:0010992 "ubiquitin homeostasis" evidence=IEA

GO:0021888 "hypothalamus gonadotrophin-releasing hormone neuron development" evidence=IEA

GO:0060613 "fat pad development" evidence=IEA

GO:0072520 "seminiferous tubule development" evidence=IEA

GO:0097009 "energy homeostasis" evidence=IEA

UNIPROTKB|F5GXK7 UBC "Polyubiquitin-C" [Homo sapiens (taxid:9606)]

 Score = 159 (61.0 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 47/158 (29%), Positives = 80/158 (50%)

Query:     1 MRIII-VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYP 59
             M+I +    G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY 
Sbjct:     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query:    60 IVKEGTKIDLTINPFLQSSFNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDG 118
             I KE T + L +   L+        + I +K    +   ++V+ +DT+ ++K KI   +G
Sbjct:    61 IQKEST-LHLVLR--LRGG------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG 111

Query:   119 TPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK 156
              P  +  L F+G +L+D  R LS+Y I++ S + + L+
Sbjct:   112 IPSDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR 148

GO:0007141 "male meiosis I" evidence=IEA

GO:0007144 "female meiosis I" evidence=IEA

GO:0008585 "female gonad development" evidence=IEA

GO:0010992 "ubiquitin homeostasis" evidence=IEA

GO:0021888 "hypothalamus gonadotrophin-releasing hormone neuron development" evidence=IEA

GO:0060613 "fat pad development" evidence=IEA

GO:0072520 "seminiferous tubule development" evidence=IEA

GO:0097009 "energy homeostasis" evidence=IEA

UNIPROTKB|F1NGE3 UBB "Polyubiquitin-B" [Gallus gallus (taxid:9031)]

 Score = 158 (60.7 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 47/158 (29%), Positives = 80/158 (50%)

Query:     1 MRIII-VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYP 59
             M+I +    G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY 
Sbjct:     5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 64

Query:    60 IVKEGTKIDLTINPFLQSSFNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDG 118
             I KE T + L +   L+        + I +K    +   ++V+ +DT+ ++K KI   +G
Sbjct:    65 IQKEST-LHLVLR--LRGG------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG 115

Query:   119 TPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK 156
              P  +  L F+G +L+D  R LS+Y I++ S + + L+
Sbjct:   116 IPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR 152

GO:0007141 "male meiosis I" evidence=IEA

GO:0007144 "female meiosis I" evidence=IEA

GO:0008585 "female gonad development" evidence=IEA

GO:0010992 "ubiquitin homeostasis" evidence=IEA

GO:0021888 "hypothalamus gonadotrophin-releasing hormone neuron development" evidence=IEA

GO:0060613 "fat pad development" evidence=IEA

GO:0072520 "seminiferous tubule development" evidence=IEA

GO:0097009 "energy homeostasis" evidence=IEA

UNIPROTKB|Q91021 UBB "Ubiquitin" [Gallus gallus (taxid:9031)]

 Score = 158 (60.7 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 47/158 (29%), Positives = 80/158 (50%)

Query:     1 MRIII-VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYP 59
             M+I +    G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY 
Sbjct:     5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 64

Query:    60 IVKEGTKIDLTINPFLQSSFNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDG 118
             I KE T + L +   L+        + I +K    +   ++V+ +DT+ ++K KI   +G
Sbjct:    65 IQKEST-LHLVLR--LRGG------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG 115

Query:   119 TPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK 156
              P  +  L F+G +L+D  R LS+Y I++ S + + L+
Sbjct:   116 IPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR 152

GO:0007141 "male meiosis I" evidence=IEA

GO:0007144 "female meiosis I" evidence=IEA

GO:0008585 "female gonad development" evidence=IEA

GO:0010992 "ubiquitin homeostasis" evidence=IEA

GO:0021888 "hypothalamus gonadotrophin-releasing hormone neuron development" evidence=IEA

GO:0060613 "fat pad development" evidence=IEA

GO:0072520 "seminiferous tubule development" evidence=IEA

GO:0097009 "energy homeostasis" evidence=IEA

UNIPROTKB|F5H265 UBC "Polyubiquitin-C" [Homo sapiens (taxid:9606)]

 Score = 158 (60.7 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 47/158 (29%), Positives = 80/158 (50%)

Query:     1 MRIII-VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYP 59
             M+I +    G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY 
Sbjct:     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query:    60 IVKEGTKIDLTINPFLQSSFNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDG 118
             I KE T + L +   L+        + I +K    +   ++V+ +DT+ ++K KI   +G
Sbjct:    61 IQKEST-LHLVLR--LRGG------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG 111

Query:   119 TPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK 156
              P  +  L F+G +L+D  R LS+Y I++ S + + L+
Sbjct:   112 IPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR 148

GO:0007141 "male meiosis I" evidence=IEA

GO:0007144 "female meiosis I" evidence=IEA

GO:0008585 "female gonad development" evidence=IEA

GO:0010992 "ubiquitin homeostasis" evidence=IEA

GO:0021888 "hypothalamus gonadotrophin-releasing hormone neuron development" evidence=IEA

GO:0060613 "fat pad development" evidence=IEA

GO:0072520 "seminiferous tubule development" evidence=IEA

GO:0097009 "energy homeostasis" evidence=IEA

UNIPROTKB|F5H388 UBC "Polyubiquitin-C" [Homo sapiens (taxid:9606)]

 Score = 158 (60.7 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 47/158 (29%), Positives = 80/158 (50%)

Query:     1 MRIII-VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYP 59
             M+I +    G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY 
Sbjct:     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query:    60 IVKEGTKIDLTINPFLQSSFNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDG 118
             I KE T + L +   L+        + I +K    +   ++V+ +DT+ ++K KI   +G
Sbjct:    61 IQKEST-LHLVLR--LRGG------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG 111

Query:   119 TPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK 156
              P  +  L F+G +L+D  R LS+Y I++ S + + L+
Sbjct:   112 IPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR 148

GO:0007141 "male meiosis I" evidence=IEA

GO:0007144 "female meiosis I" evidence=IEA

GO:0008585 "female gonad development" evidence=IEA

GO:0010992 "ubiquitin homeostasis" evidence=IEA

GO:0021888 "hypothalamus gonadotrophin-releasing hormone neuron development" evidence=IEA

GO:0060613 "fat pad development" evidence=IEA

GO:0072520 "seminiferous tubule development" evidence=IEA

GO:0097009 "energy homeostasis" evidence=IEA

UNIPROTKB|F5H747 UBC "Polyubiquitin-C" [Homo sapiens (taxid:9606)]

 Score = 158 (60.7 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 47/158 (29%), Positives = 80/158 (50%)

Query:     1 MRIII-VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYP 59
             M+I +    G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY 
Sbjct:     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query:    60 IVKEGTKIDLTINPFLQSSFNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDG 118
             I KE T + L +   L+        + I +K    +   ++V+ +DT+ ++K KI   +G
Sbjct:    61 IQKEST-LHLVLR--LRGG------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG 111

Query:   119 TPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK 156
              P  +  L F+G +L+D  R LS+Y I++ S + + L+
Sbjct:   112 IPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR 148

GO:0007141 "male meiosis I" evidence=IEA

GO:0007144 "female meiosis I" evidence=IEA

GO:0008585 "female gonad development" evidence=IEA

GO:0010992 "ubiquitin homeostasis" evidence=IEA

GO:0021888 "hypothalamus gonadotrophin-releasing hormone neuron development" evidence=IEA

GO:0060613 "fat pad development" evidence=IEA

GO:0072520 "seminiferous tubule development" evidence=IEA

GO:0097009 "energy homeostasis" evidence=IEA

UNIPROTKB|F5H7Y5 UBC "Polyubiquitin-C" [Homo sapiens (taxid:9606)]

 Score = 158 (60.7 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 47/158 (29%), Positives = 80/158 (50%)

Query:     1 MRIII-VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYP 59
             M+I +    G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY 
Sbjct:     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query:    60 IVKEGTKIDLTINPFLQSSFNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDG 118
             I KE T + L +   L+        + I +K    +   ++V+ +DT+ ++K KI   +G
Sbjct:    61 IQKEST-LHLVLR--LRGG------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG 111

Query:   119 TPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK 156
              P  +  L F+G +L+D  R LS+Y I++ S + + L+
Sbjct:   112 IPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR 148

GO:0007141 "male meiosis I" evidence=IEA

GO:0007144 "female meiosis I" evidence=IEA

GO:0008585 "female gonad development" evidence=IEA

GO:0010992 "ubiquitin homeostasis" evidence=IEA

GO:0021888 "hypothalamus gonadotrophin-releasing hormone neuron development" evidence=IEA

GO:0060613 "fat pad development" evidence=IEA

GO:0072520 "seminiferous tubule development" evidence=IEA

GO:0097009 "energy homeostasis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	252
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	2e-10
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	7e-09
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	4e-08
smart00213	72	smart00213, UBQ, Ubiquitin homologues	4e-07
smart00213	72	smart00213, UBQ, Ubiquitin homologues	5e-07
cd01805	77	cd01805, RAD23_N, Ubiquitin-like domain of RAD23	2e-06
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	6e-06
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	2e-05
cd01803	76	cd01803, Ubiquitin, Ubiquitin	2e-04
cd01802	103	cd01802, AN1_N, ubiquitin-like domain of AN1	3e-04
cd00196	69	cd00196, UBQ, Ubiquitin-like proteins	0.001
smart00213	72	smart00213, UBQ, Ubiquitin homologues	0.002
cd01803	76	cd01803, Ubiquitin, Ubiquitin	0.002
cd01807	74	cd01807, GDX_N, ubiquitin-like domain of GDX	0.002

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 94  RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIV 153
           +   ++VD +DTV  LKEKI   +G P+ +  L FSG  L+D+   LSEYGI++ S + +
Sbjct: 6   KTITLEVDPSDTVSELKEKIEDKEGIPVDQQRLIFSGKVLEDD-TTLSEYGIQDGSTLHL 64

Query: 154 FLKT 157
            L+ 
Sbjct: 65  VLRL 68

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 50.7 bits (122), Expect = 7e-09
 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 93  SRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEII 152
            + F ++V   DTV  LK KI   +G P ++  L ++G  L D+ + LS+YGI++ S + 
Sbjct: 7   GKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDD-KTLSDYGIQDGSTLH 65

Query: 153 V 153
           +
Sbjct: 66  L 66

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score = 48.8 bits (117), Expect = 4e-08
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 6  VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGT 65
            +G    LEV   + V E+K KIE    IP   Q L  SG  L D   + +Y I ++G+
Sbjct: 2  TLDGKTITLEVDPSDTVSELKEKIEDKEGIPVDQQRLIFSGKVLEDDTTLSEYGI-QDGS 60

Query: 66 KIDLTINP 73
           + L +  
Sbjct: 61 TLHLVLRL 68

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score = 46.1 bits (110), Expect = 4e-07
 Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 85  IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEY 143
           I + +K    +   ++V  +DTV  LKEKI  + G P ++  L + G  L+D+ R L++Y
Sbjct: 1   IELTVKTLDGKTITLEVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVLEDD-RTLADY 59

Query: 144 GIREFSEIIVFLK 156
           GI++ S I + L+
Sbjct: 60  GIQDGSTIHLVLR 72

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score = 45.7 bits (109), Expect = 5e-07
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 1  MRIIIV-ANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYP 59
          + + +   +G    LEV   + V E+K KI ++  IP   Q L   G  L D   + DY 
Sbjct: 1  IELTVKTLDGKTITLEVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVLEDDRTLADYG 60

Query: 60 IVKEGTKIDL 69
          I ++G+ I L
Sbjct: 61 I-QDGSTIHL 69

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|176400 cd01805, RAD23_N, Ubiquitin-like domain of RAD23

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 95  KFNIDVDRTDTVRSLKEKIHIIDG--TPIKRMLLFFSGIELDDEFRNLSEYGIREFSEII 152
            F I+VD  DTV  LKEKI    G   P ++  L +SG  L D+   L EY I E   ++
Sbjct: 12  TFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDD-TTLEEYKIDEKDFVV 70

Query: 153 VFLK 156
           V + 
Sbjct: 71  VMVS 74

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL). Length = 77

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 46.4 bits (110), Expect = 6e-06
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 91  FPSRKFNIDVDRTDTVRSLKEKIHI---IDGTPIKRMLLFFSGIELDDEFRNLSEYGIRE 147
              +KF ID++  +TV+ LKEKI      D  P+ +  L +SG  L D+ + + EY I+E
Sbjct: 8   LQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDD-KTVKEYKIKE 66

Query: 148 FSEIIVFL---KTMNRLRDNPPI 167
              ++V +   KT       P  
Sbjct: 67  KDFVVVMVSKPKTGTGKVAPPAA 89

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 20/58 (34%), Positives = 25/58 (43%)

Query: 8  NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGT 65
           G  F LEV   + V E+K KI     +P   Q L  +G  L D   + DY I    T
Sbjct: 6  TGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGST 63

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 5/65 (7%)

Query: 98  IDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKT 157
           ++V+ +DT+ ++K KI   +G P  +  L F+G +L+D  R LS+Y I++ S + + L  
Sbjct: 15  LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVL-- 71

Query: 158 MNRLR 162
             RLR
Sbjct: 72  --RLR 74

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|176397 cd01802, AN1_N, ubiquitin-like domain of AN1

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 96  FNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIRE 147
           F + V   +TV S+K KI  ++G P+ +  L ++ +EL+DE+  L++Y I E
Sbjct: 40  FELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEY-CLNDYNISE 90

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown. Length = 103

>gnl|CDD|176352 cd00196, UBQ, Ubiquitin-like proteins

 Score = 36.3 bits (84), Expect = 0.001
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 87  IIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIR 146
            +     +   + V    TV  LKEK+    G P ++  L  +G  L D    L +YG++
Sbjct: 1   KVKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDS-LTLEDYGLQ 59

Query: 147 EFSEIIVFLK 156
           +  E+++  +
Sbjct: 60  DGDELVLVPR 69

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate. Length = 69

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 18/62 (29%), Positives = 38/62 (61%)

Query: 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDIL 240
           L+G +I LE++ S TV+EL+  +     +P E    I+K +++ D+ +L  +G++ G  +
Sbjct: 8   LDGKTITLEVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVLEDDRTLADYGIQDGSTI 67

Query: 241 YV 242
           ++
Sbjct: 68  HL 69

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 21/57 (36%), Positives = 28/57 (49%)

Query: 9  GHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGT 65
          G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY I KE T
Sbjct: 10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|176402 cd01807, GDX_N, ubiquitin-like domain of GDX

 Score = 35.6 bits (82), Expect = 0.002
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 9  GHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKID 68
          G E  L+V  +E V  +K+ + +  N+P   Q L   G  L D   + DY I     K++
Sbjct: 10 GRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPN-AKLN 68

Query: 69 LTINP 73
          L + P
Sbjct: 69 LVVRP 73

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown. Length = 74

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	252
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.8
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.78
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.77
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.76
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.76
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.74
PTZ00044	76	ubiquitin; Provisional	99.74
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.74
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.71
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.71
KOG0004	156	consensus Ubiquitin/40S ribosomal protein S27a fus	99.71
PTZ00044	76	ubiquitin; Provisional	99.71
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.7
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.7
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.7
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.7
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.69
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.69
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.68
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.68
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.67
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.66
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.66
KOG0003	128	consensus Ubiquitin/60s ribosomal protein L40 fusi	99.66
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.66
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.65
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.65
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.64
KOG0003	128	consensus Ubiquitin/60s ribosomal protein L40 fusi	99.64
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.64
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.64
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.63
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.63
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.63
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.63
KOG0005	70	consensus Ubiquitin-like protein [Cell cycle contr	99.63
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.61
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.61
KOG0004	156	consensus Ubiquitin/40S ribosomal protein S27a fus	99.61
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.61
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.61
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.6
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.6
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.59
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.59
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.58
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.58
KOG0005	70	consensus Ubiquitin-like protein [Cell cycle contr	99.58
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.55
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	99.52
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.5
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	99.49
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	99.48
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.48
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.47
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	99.44
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	99.44
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	99.43
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	99.43
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	99.4
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	99.33
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	99.31
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	99.27
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	99.25
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	99.23
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	99.2
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	99.2
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	99.18
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	99.15
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	99.14
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	99.06
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	99.05
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	98.98
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	98.97
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	98.94
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	98.94
KOG0001	75	consensus Ubiquitin and ubiquitin-like proteins [P	98.87
KOG0001	75	consensus Ubiquitin and ubiquitin-like proteins [P	98.86
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	98.78
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	98.77
PLN02560	308	enoyl-CoA reductase	98.68
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	98.66
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	98.64
PLN02560	308	enoyl-CoA reductase	98.6
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	98.55
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	98.52
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	98.42
KOG4248	1143	consensus Ubiquitin-like protein, regulator of apo	98.38
KOG4248	1143	consensus Ubiquitin-like protein, regulator of apo	98.37
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	98.35
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	98.34
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	98.32
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	98.29
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	98.19
KOG0006	446	consensus E3 ubiquitin-protein ligase (Parkin prot	98.08
KOG1872	473	consensus Ubiquitin-specific protease [Posttransla	98.06
KOG0006	446	consensus E3 ubiquitin-protein ligase (Parkin prot	98.02
KOG4495	110	consensus RNA polymerase II transcription elongati	98.0
KOG1872	473	consensus Ubiquitin-specific protease [Posttransla	98.0
KOG3493	73	consensus Ubiquitin-like protein [Posttranslationa	97.95
KOG4495	110	consensus RNA polymerase II transcription elongati	97.8
KOG3493	73	consensus Ubiquitin-like protein [Posttranslationa	97.66
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	97.64
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	97.54
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	97.47
KOG1769	99	consensus Ubiquitin-like proteins [Posttranslation	97.45
KOG1769	99	consensus Ubiquitin-like proteins [Posttranslation	97.18
COG5417	81	Uncharacterized small protein [Function unknown]	97.15
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	96.99
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	96.96
PF13019	162	Telomere_Sde2: Telomere stability and silencing	96.88
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	96.81
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	96.76
PF14533	213	USP7_C2: Ubiquitin-specific protease C-terminal; P	96.72
PRK06437	67	hypothetical protein; Provisional	96.62
KOG0013	231	consensus Uncharacterized conserved protein [Funct	96.53
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	96.33
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	96.3
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	96.13
COG5417	81	Uncharacterized small protein [Function unknown]	95.92
PRK08364	70	sulfur carrier protein ThiS; Provisional	95.77
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	95.66
PRK06488	65	sulfur carrier protein ThiS; Validated	95.57
KOG3206	234	consensus Alpha-tubulin folding cofactor B [Posttr	95.55
PF14533	213	USP7_C2: Ubiquitin-specific protease C-terminal; P	95.46
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	95.24
KOG1639	297	consensus Steroid reductase required for elongatio	95.2
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	94.96
KOG0013	231	consensus Uncharacterized conserved protein [Funct	94.9
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	94.86
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	94.76
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	94.73
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	94.64
PRK07440	70	hypothetical protein; Provisional	94.48
PF12436	249	USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-sp	94.47
PRK06083	84	sulfur carrier protein ThiS; Provisional	94.45
PRK05659	66	sulfur carrier protein ThiS; Validated	94.42
PF11620	88	GABP-alpha: GA-binding protein alpha chain; InterP	94.4
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	94.37
cd00565	65	ThiS ThiaminS ubiquitin-like sulfur carrier protei	94.37
PRK07696	67	sulfur carrier protein ThiS; Provisional	94.16
PF15044	76	CLU_N: Mitochondrial function, CLU-N-term	94.1
PRK08053	66	sulfur carrier protein ThiS; Provisional	94.09
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	94.09
PF13019	162	Telomere_Sde2: Telomere stability and silencing	94.07
TIGR01683	64	thiS thiamine biosynthesis protein ThiS. This mode	94.05
PF11620	88	GABP-alpha: GA-binding protein alpha chain; InterP	93.99
PRK05863	65	sulfur carrier protein ThiS; Provisional	93.91
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	93.83
COG5227	103	SMT3 Ubiquitin-like protein (sentrin) [Posttransla	93.82
PF14836	88	Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A	93.77
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	93.68
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	93.64
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	93.62
KOG1639	297	consensus Steroid reductase required for elongatio	93.6
cd00754	80	MoaD Ubiquitin domain of MoaD-like proteins. MoaD	93.58
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	93.49
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	93.46
PF15044	76	CLU_N: Mitochondrial function, CLU-N-term	93.24
PF12436	249	USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-sp	92.87
COG2104	68	ThiS Sulfur transfer protein involved in thiamine	92.22
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	91.55
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	91.52
PF02597	77	ThiS: ThiS family; InterPro: IPR003749 ThiS (thiam	91.34
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	91.3
KOG3206	234	consensus Alpha-tubulin folding cofactor B [Posttr	91.08
KOG4598	1203	consensus Putative ubiquitin-specific protease [Po	90.82
PLN02799	82	Molybdopterin synthase sulfur carrier subunit	90.5
PF09379	80	FERM_N: FERM N-terminal domain ; InterPro: IPR0189	90.09
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	90.08
COG5227	103	SMT3 Ubiquitin-like protein (sentrin) [Posttransla	90.07
PF10790	76	DUF2604: Protein of Unknown function (DUF2604); In	90.07
KOG4583	391	consensus Membrane-associated ER protein involved	90.04
PRK06488	65	sulfur carrier protein ThiS; Validated	90.02
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	88.47
PF10790	76	DUF2604: Protein of Unknown function (DUF2604); In	88.43
PRK06437	67	hypothetical protein; Provisional	88.16
PRK08364	70	sulfur carrier protein ThiS; Provisional	88.02
PF10209	122	DUF2340: Uncharacterized conserved protein (DUF234	87.67
PRK11840	326	bifunctional sulfur carrier protein/thiazole synth	87.39
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	87.22
PF09379	80	FERM_N: FERM N-terminal domain ; InterPro: IPR0189	86.95
PRK06944	65	sulfur carrier protein ThiS; Provisional	86.89
KOG2982	418	consensus Uncharacterized conserved protein [Funct	86.87
TIGR01687	88	moaD_arch MoaD family protein, archaeal. Members o	86.73
cd01760	72	RBD Ubiquitin-like domain of RBD-like S/T kinases.	86.46
TIGR01682	80	moaD molybdopterin converting factor, subunit 1, n	86.44
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	86.42
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	86.24
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	86.03
smart00455	70	RBD Raf-like Ras-binding domain.	85.83
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	85.73
KOG2086	380	consensus Protein tyrosine phosphatase SHP1/Cofact	85.53
cd00754	80	MoaD Ubiquitin domain of MoaD-like proteins. MoaD	85.41
smart00455	70	RBD Raf-like Ras-binding domain.	85.33
PLN02799	82	Molybdopterin synthase sulfur carrier subunit	85.15
PF14453	57	ThiS-like: ThiS-like ubiquitin	84.93
PF08337	539	Plexin_cytopl: Plexin cytoplasmic RasGAP domain; I	84.13
PTZ00380	121	microtubule-associated protein (MAP); Provisional	83.64
PF14451	81	Ub-Mut7C: Mut7-C ubiquitin	83.45
cd01818	77	TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleo	82.86
cd01760	72	RBD Ubiquitin-like domain of RBD-like S/T kinases.	82.6
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	82.44
cd00565	65	ThiS ThiaminS ubiquitin-like sulfur carrier protei	82.14
KOG0012	380	consensus DNA damage inducible protein [Replicatio	82.12
PF08337	539	Plexin_cytopl: Plexin cytoplasmic RasGAP domain; I	81.81
KOG0012	380	consensus DNA damage inducible protein [Replicatio	80.86
PF14453	57	ThiS-like: ThiS-like ubiquitin	80.21

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.80  E-value=7.6e-19  Score=128.92  Aligned_cols=94  Identities=23%  Similarity=0.407  Sum_probs=82.4

Q ss_pred             ccccccCCcEEEEEecCCCCccCCcCCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceeccc
Q 045158           57 DYPIVKEGTKIDLTINPFLQSSFNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDD  135 (252)
Q Consensus        57 ~~~i~~~~t~i~l~~~~~~~~~~~~~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~  135 (252)
                      .+++.+-++ +|+.        +++.+.|+|+|+ +.|+++.++|++++||++||++|+++.|+|+++|+|+|+|+.|+ 
T Consensus         9 ~~~~~~~~~-~~~~--------~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~-   78 (103)
T cd01802           9 FFNEDNMGP-FHYK--------LPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELE-   78 (103)
T ss_pred             ccccCCcce-eEEe--------eccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECC-
Confidence            455655556 7665        456778999999 68999999999999999999999999999999999999999996 


Q ss_pred             ccccccccCCCCCCEEEEEeeeccccCCC
Q 045158          136 EFRNLSEYGIREFSEIIVFLKTMNRLRDN  164 (252)
Q Consensus       136 d~~~L~~y~i~~~s~i~l~~~~~~~~~~~  164 (252)
                      |+.+|++|+|+++++|+|.+    |++||
T Consensus        79 D~~tL~dy~I~~~stL~l~~----~l~GG  103 (103)
T cd01802          79 DEYCLNDYNISEGCTLKLVL----AMRGG  103 (103)
T ss_pred             CCCcHHHcCCCCCCEEEEEE----ecCCC
Confidence            88999999999999999998    56554

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.78  E-value=7.6e-19  Score=121.77  Aligned_cols=72  Identities=28%  Similarity=0.488  Sum_probs=68.1

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecC
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINP   73 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~   73 (252)
                      |+|+|+. .|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||.++++ ++|++++
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~-l~l~~~~   73 (74)
T cd01807           1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAK-LNLVVRP   73 (74)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCE-EEEEEcC
Confidence            8999965 9999999999999999999999999999999999999999999999999999998887 8988764

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.77  E-value=2.1e-18  Score=119.52  Aligned_cols=74  Identities=19%  Similarity=0.438  Sum_probs=68.5

Q ss_pred             EEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCCC
Q 045158           85 IHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDN  164 (252)
Q Consensus        85 ~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~~  164 (252)
                      |+|+||. +++++++|++++||++||++|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|+++++||+.+    |++||
T Consensus         1 mqi~vk~-~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~-D~~tL~~~~i~~~~tl~l~~----~l~GG   74 (74)
T cd01793           1 MQLFVRA-QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLE-DDATLGQCGVEELCTLEVAG----RLLGG   74 (74)
T ss_pred             CEEEEEC-CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECC-CCCCHHHcCCCCCCEEEEEE----ecCCC
Confidence            6899996 478999999999999999999999999999999999999996 88999999999999999998    66664

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.76  E-value=5.5e-18  Score=124.36  Aligned_cols=91  Identities=14%  Similarity=0.162  Sum_probs=82.2

Q ss_pred             cccCCCCCCEEEEEeeeccccCCCCccccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecC
Q 045158          141 SEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQ  220 (252)
Q Consensus       141 ~~y~i~~~s~i~l~~~~~~~~~~~~~~~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g  220 (252)
                      -.+++.+-+++|+.+    |++++     |+++|+    ++.|++++++|++++||++||++|++++|+|+++|+|+|+|
T Consensus         8 ~~~~~~~~~~~~~~~----~~~~~-----M~I~Vk----~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~G   74 (103)
T cd01802           8 PFFNEDNMGPFHYKL----PFYDT-----MELFIE----TLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNN   74 (103)
T ss_pred             CccccCCcceeEEee----ccCCC-----EEEEEE----cCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECC
Confidence            357788899999988    44443     888886    57899999999999999999999999999999999999999


Q ss_pred             eeecCCccccccCCCCCCEEEEec
Q 045158          221 RIMRDNCSLRWHGVEYGDILYVFK  244 (252)
Q Consensus       221 ~~l~d~~tL~~y~I~~gsti~l~~  244 (252)
                      +.|+|+.+|++|+|++|+||+|..
T Consensus        75 k~L~D~~tL~dy~I~~~stL~l~~   98 (103)
T cd01802          75 MELEDEYCLNDYNISEGCTLKLVL   98 (103)
T ss_pred             EECCCCCcHHHcCCCCCCEEEEEE
Confidence            999999999999999999999964

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.76  E-value=3.5e-18  Score=118.41  Aligned_cols=72  Identities=21%  Similarity=0.413  Sum_probs=68.3

Q ss_pred             EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeee
Q 045158           85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKT  157 (252)
Q Consensus        85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~  157 (252)
                      |+|+|+ ..|+++.++|++++||++||++|+++.|+|+++|+|+|+|+.|+ |+.+|++|+|+++++|+|+++|
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~-d~~~L~~~~i~~~~~l~l~~~~   73 (74)
T cd01807           1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALA-DDKRLSDYSIGPNAKLNLVVRP   73 (74)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECC-CCCCHHHCCCCCCCEEEEEEcC
Confidence            689999 68999999999999999999999999999999999999999996 8899999999999999999853

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.74  E-value=6.8e-18  Score=116.95  Aligned_cols=70  Identities=24%  Similarity=0.304  Sum_probs=65.2

Q ss_pred             CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158            1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN   72 (252)
Q Consensus         1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~   72 (252)
                      |+|+|+. +++++++|++++||++||++|++++|+|+++|+|+|+|++|+|+.+|++|+|.++++ +|+.++
T Consensus         1 mqi~vk~-~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~t-l~l~~~   70 (74)
T cd01793           1 MQLFVRA-QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCT-LEVAGR   70 (74)
T ss_pred             CEEEEEC-CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCE-EEEEEe
Confidence            8999976 478999999999999999999999999999999999999999999999999998877 888753

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>PTZ00044 ubiquitin; Provisional

Probab=99.74  E-value=1.3e-17  Score=116.22  Aligned_cols=71  Identities=25%  Similarity=0.461  Sum_probs=67.9

Q ss_pred             EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      |+|+|+ ..|+++++++++++||++||++|+++.|+|++.|+|+|+|+.|+ |+.+|++|+++++++||+.++
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~-d~~~l~~~~i~~~~~i~l~~~   72 (76)
T PTZ00044          1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMS-DDLKLSDYKVVPGSTIHMVLQ   72 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEcc-CCCcHHHcCCCCCCEEEEEEE
Confidence            689999 68999999999999999999999999999999999999999996 989999999999999999983

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.74  E-value=9.6e-18  Score=117.11  Aligned_cols=73  Identities=26%  Similarity=0.406  Sum_probs=67.0

Q ss_pred             CEEEEEe-CCeE-EEEE-ecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158            1 MRIIIVA-NGHE-FVLE-VGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF   74 (252)
Q Consensus         1 M~v~v~~-~g~~-~~l~-v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~   74 (252)
                      |+|+|+. +|+. +.++ +.+++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.++++ |+|+++++
T Consensus         1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~-i~l~~~~~   76 (78)
T cd01797           1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDI-IQLLVRQD   76 (78)
T ss_pred             CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCE-EEEEEecC
Confidence            9999966 8886 6895 89999999999999999999999999999999999999999999998877 99987654

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.71  E-value=3.5e-17  Score=114.23  Aligned_cols=72  Identities=19%  Similarity=0.371  Sum_probs=67.0

Q ss_pred             EEEEEE-eCCcE-EEEe-eCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeee
Q 045158           85 IHIIIK-FPSRK-FNID-VDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKT  157 (252)
Q Consensus        85 ~~i~v~-~~g~~-~~l~-v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~  157 (252)
                      |+|+|+ ..|++ +.++ +.+++||++||++|++..|+|+++|+|+|+|+.|+ |+.+|++|||+++++|+|++++
T Consensus         1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~-D~~tL~~y~i~~~~~i~l~~~~   75 (78)
T cd01797           1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQME-DGHTLFDYNVGLNDIIQLLVRQ   75 (78)
T ss_pred             CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECC-CCCCHHHcCCCCCCEEEEEEec
Confidence            789999 67886 6895 89999999999999999999999999999999996 9999999999999999999954

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.71  E-value=3.6e-17  Score=113.31  Aligned_cols=68  Identities=24%  Similarity=0.388  Sum_probs=65.0

Q ss_pred             EEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           87 IIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        87 i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      |+|+ ..|+++++++++++||++||++|++..|+|+++|+|.|+|+.|+ |+.+|++|+|+++++++|.+
T Consensus         1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~-D~~tL~~~~i~~~~tl~l~~   69 (74)
T cd01810           1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPME-DEHPLGEYGLKPGCTVFMNL   69 (74)
T ss_pred             CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECC-CCCCHHHcCCCCCCEEEEEE
Confidence            5788 57999999999999999999999999999999999999999996 88999999999999999998

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]

Probab=99.71  E-value=3.7e-18  Score=130.18  Aligned_cols=115  Identities=24%  Similarity=0.422  Sum_probs=93.1

Q ss_pred             EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCC
Q 045158           85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRD  163 (252)
Q Consensus        85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~  163 (252)
                      |+|||+ +.++++.+++.+++||..+|++|++.+|||+++|+|+|.|+.|+ |+++|+||+|+..++|+|++    |++|
T Consensus         1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLe-dgrtlSDY~Iqkestl~l~l----~l~G   75 (156)
T KOG0004|consen    1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL----RLRG   75 (156)
T ss_pred             CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccc-cCCccccccccccceEEEEE----EecC
Confidence            679999 79999999999999999999999999999999999999999997 88999999999999999999    8999


Q ss_pred             CCccccceeeEEeeeeccCCceEE------EEecCCCcHHHHHHHHh
Q 045158          164 NPPIRRLSFKVQTSSSLLNGASIP------LEMQDSSTVNELRHLLL  204 (252)
Q Consensus       164 ~~~~~~~~i~v~~~~~~~~g~~~~------l~v~~~~tV~~Lk~~i~  204 (252)
                      |+..++-..+..+.......+...      ..|+.+-.|..+.+++.
T Consensus        76 g~kkrkkk~~~~pk~~~~~~kk~~l~~~~y~kvd~ngkiq~l~~~~~  122 (156)
T KOG0004|consen   76 GAKKRKKKSYTTPKKIKSKHKKVSLAVLKYYKVDENGKVQRLRRECP  122 (156)
T ss_pred             CcccccccccccccccCCCccccccCCccceeeccCcchhhhhhhcC
Confidence            887766544543322112222222      34666667777777664

>PTZ00044 ubiquitin; Provisional

Probab=99.71  E-value=5.8e-17  Score=112.85  Aligned_cols=71  Identities=24%  Similarity=0.406  Sum_probs=66.9

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN   72 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~   72 (252)
                      |+|+|+. +|+++++++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.++++ +|+.++
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~-i~l~~~   72 (76)
T PTZ00044          1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGST-IHMVLQ   72 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCE-EEEEEE
Confidence            8999965 9999999999999999999999999999999999999999999999999999997777 888764

>cd01803 Ubiquitin Ubiquitin

Probab=99.70  E-value=6.8e-17  Score=112.39  Aligned_cols=75  Identities=32%  Similarity=0.608  Sum_probs=69.8

Q ss_pred             EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCC
Q 045158           85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRD  163 (252)
Q Consensus        85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~  163 (252)
                      |+|+|+ ..|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+ |+.+|++|++++|++|++.+    |++|
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~-d~~~L~~~~i~~~~~i~l~~----~~~g   75 (76)
T cd01803           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL----RLRG   75 (76)
T ss_pred             CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECC-CCCcHHHcCCCCCCEEEEEE----EccC
Confidence            689999 57999999999999999999999999999999999999999996 88999999999999999998    5555


Q ss_pred             C
Q 045158          164 N  164 (252)
Q Consensus       164 ~  164 (252)
                      |
T Consensus        76 g   76 (76)
T cd01803          76 G   76 (76)
T ss_pred             C
Confidence            4

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.70  E-value=4e-17  Score=112.37  Aligned_cols=69  Identities=13%  Similarity=0.168  Sum_probs=64.6

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEE
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLT   70 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~   70 (252)
                      |+|+|+. .|+.+.++++|++||++||++|+++.|+|+++|||+|+|+.|+|+.+|++|||.++++ |||.
T Consensus         2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~st-v~l~   71 (73)
T cd01791           2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMN-LELY   71 (73)
T ss_pred             EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCE-EEEE
Confidence            7888865 8999999999999999999999999999999999999999999999999999997777 8874

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.70  E-value=4.3e-17  Score=111.42  Aligned_cols=67  Identities=18%  Similarity=0.278  Sum_probs=62.2

Q ss_pred             EEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEe
Q 045158            4 IIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTI   71 (252)
Q Consensus         4 ~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~   71 (252)
                      .|+. +|+++.+++++++||+++|++|++.+|+|+++|+|+|+|++|+|+.+|++|+|.++++ |||++
T Consensus         2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~t-v~~~~   69 (70)
T cd01794           2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYV-VQVIV   69 (70)
T ss_pred             eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCE-EEEEe
Confidence            3544 8999999999999999999999999999999999999999999999999999997766 99875

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.70  E-value=1.2e-16  Score=111.22  Aligned_cols=70  Identities=24%  Similarity=0.497  Sum_probs=67.0

Q ss_pred             EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      |+|+|+ ..|+++.+++++++||++||++|++..|+|+++|+|+|+|+.|. |+.+|++|++++|++|++.+
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~-d~~tl~~~~i~~g~~i~l~~   71 (76)
T cd01806           1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DDKTAADYKLEGGSVLHLVL   71 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEcc-CCCCHHHcCCCCCCEEEEEE
Confidence            679999 58999999999999999999999999999999999999999996 88999999999999999998

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.69  E-value=9e-17  Score=110.59  Aligned_cols=71  Identities=18%  Similarity=0.276  Sum_probs=66.7

Q ss_pred             cEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           84 KIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        84 ~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      +|.|+|+ ..|+.+.+++++++||++||++|+++.|+|+++|+|+|+|+.|. |+.+|++|||++|++|||..
T Consensus         1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~-D~~tL~~ygi~~~stv~l~~   72 (73)
T cd01791           1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFK-DHISLGDYEIHDGMNLELYY   72 (73)
T ss_pred             CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCC-CCCCHHHcCCCCCCEEEEEe
Confidence            4789999 57999999999999999999999999999999999999999996 88999999999999999864

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.69  E-value=1.1e-16  Score=111.70  Aligned_cols=73  Identities=29%  Similarity=0.393  Sum_probs=67.7

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCC--CCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNI--PATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF   74 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i--~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~   74 (252)
                      |+|+|+. +|+.+.+++++++||.+||++|++.+|+  |+++|+|+|+|+.|+|+.+|++||+.++++ |+++++++
T Consensus         1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~-i~~~~~~~   76 (77)
T cd01805           1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDF-VVVMVSKP   76 (77)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCE-EEEEEecC
Confidence            8999965 9999999999999999999999999999  999999999999999999999999997777 88877643

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.68  E-value=1.4e-16  Score=108.95  Aligned_cols=67  Identities=24%  Similarity=0.319  Sum_probs=63.2

Q ss_pred             EEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           88 IIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        88 ~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      .|+ .+|+++++++++++||++||++|++..|+|+++|+|+|+|+.|+ |+.+|.+|+|+++++|||++
T Consensus         2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~-D~~~l~~~~i~~~~tv~~~~   69 (70)
T cd01794           2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLT-DKTRLQETKIQKDYVVQVIV   69 (70)
T ss_pred             eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECC-CCCCHHHcCCCCCCEEEEEe
Confidence            356 47999999999999999999999999999999999999999996 89999999999999999986

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.68  E-value=1.7e-16  Score=109.98  Aligned_cols=67  Identities=19%  Similarity=0.206  Sum_probs=63.9

Q ss_pred             eccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecC
Q 045158          179 SLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKG  245 (252)
Q Consensus       179 ~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~  245 (252)
                      +++.|++++++|++++||++||++|++..|+|+++|+|+|+|+.|+|+++|.+|||+++++|+|...
T Consensus         4 k~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~   70 (74)
T cd01810           4 RNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLR   70 (74)
T ss_pred             ECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEE
Confidence            4688999999999999999999999999999999999999999999999999999999999999743

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.67  E-value=3e-16  Score=109.72  Aligned_cols=70  Identities=21%  Similarity=0.352  Sum_probs=66.3

Q ss_pred             cEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           84 KIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        84 ~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      .|+|+|+ ..|+.+++++++++||++||++|+++.|+|+++|+|.|+|+.|. |+ +|++|||.+|++|+|+.
T Consensus         1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~-d~-~L~~~gi~~~~~i~l~~   71 (78)
T cd01804           1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLS-SG-KLQDLGLGDGSKLTLVP   71 (78)
T ss_pred             CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCC-CC-cHHHcCCCCCCEEEEEe
Confidence            3889999 57999999999999999999999999999999999999999996 77 99999999999999998

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.66  E-value=2.9e-16  Score=107.59  Aligned_cols=68  Identities=21%  Similarity=0.395  Sum_probs=64.3

Q ss_pred             EEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           87 IIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        87 i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      |+|+ ..|+++.+++++++||++||++|+++.|+|+++|+|+|+|++|+ |+.+|++|+|+++|++||+.
T Consensus         1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~-d~~~l~~~~i~~~stl~l~~   69 (70)
T cd01798           1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELR-NTTTIQECDLGQQSILHAVR   69 (70)
T ss_pred             CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECC-CCCcHHHcCCCCCCEEEEEe
Confidence            5778 57999999999999999999999999999999999999999996 88999999999999999975

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.66  E-value=5.7e-16  Score=108.06  Aligned_cols=71  Identities=37%  Similarity=0.534  Sum_probs=67.4

Q ss_pred             EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCC--CCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGT--PIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gi--p~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      |+|+|+ ..|+.+.+++++++||++||++|++.+|+  |+++|+|+|+|+.|+ |+.+|++|+|++|++|+++++
T Consensus         1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~-d~~~L~~~~i~~~~~i~~~~~   74 (77)
T cd01805           1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILK-DDTTLEEYKIDEKDFVVVMVS   74 (77)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEcc-CCCCHHHcCCCCCCEEEEEEe
Confidence            689999 68999999999999999999999999999  999999999999996 889999999999999999885

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=9.9e-18  Score=119.20  Aligned_cols=74  Identities=31%  Similarity=0.597  Sum_probs=69.6

Q ss_pred             EEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCCC
Q 045158           86 HIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDN  164 (252)
Q Consensus        86 ~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~~  164 (252)
                      +++++ ++|+++++++++++||.++|++|+++.|+|+++|+|.|+|+.|+ |+.||++|||+..+|||+.+    |++||
T Consensus         2 ~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LE-D~~Tla~Y~i~~~~Tl~~~~----rL~GG   76 (128)
T KOG0003|consen    2 QIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVL----RLRGG   76 (128)
T ss_pred             cEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccc-cCCcccccCccchhhhhhhH----HHhcC
Confidence            45666 89999999999999999999999999999999999999999997 99999999999999999998    77776

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.66  E-value=3.9e-16  Score=109.11  Aligned_cols=70  Identities=24%  Similarity=0.354  Sum_probs=65.3

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN   72 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~   72 (252)
                      |+|+|+. .|+.+.+++++++||++||++|+++.++|+++|+|+|+|+.|+|+ +|++|||.++++ |+|+..
T Consensus         2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~-i~l~~~   72 (78)
T cd01804           2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSK-LTLVPT   72 (78)
T ss_pred             eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCE-EEEEee
Confidence            8999966 899999999999999999999999999999999999999999999 999999997777 888754

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.65  E-value=3.6e-16  Score=107.13  Aligned_cols=68  Identities=15%  Similarity=0.317  Sum_probs=63.0

Q ss_pred             EEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEe
Q 045158            3 IIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTI   71 (252)
Q Consensus         3 v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~   71 (252)
                      |+|+. .|+++.+++++++||+++|++|+++.|+|+++|+|+|+|++|+|+.+|++|||.++++ +||+.
T Consensus         1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~st-l~l~~   69 (70)
T cd01798           1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSI-LHAVR   69 (70)
T ss_pred             CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCE-EEEEe
Confidence            46754 8999999999999999999999999999999999999999999999999999998887 88763

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>cd01803 Ubiquitin Ubiquitin

Probab=99.65  E-value=7.1e-16  Score=107.21  Aligned_cols=71  Identities=34%  Similarity=0.543  Sum_probs=66.5

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN   72 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~   72 (252)
                      |+|+|+. +|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.++++ |++.++
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~-i~l~~~   72 (76)
T cd01803           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR   72 (76)
T ss_pred             CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCE-EEEEEE
Confidence            8999965 8999999999999999999999999999999999999999999999999999997777 888754

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.64  E-value=9.6e-16  Score=106.56  Aligned_cols=71  Identities=25%  Similarity=0.402  Sum_probs=66.6

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN   72 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~   72 (252)
                      |+|+|+. +|+++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|++.++++ |++.++
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~-i~l~~~   72 (76)
T cd01806           1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSV-LHLVLA   72 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCE-EEEEEE
Confidence            8999966 8999999999999999999999999999999999999999999999999999997777 888764

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=2.8e-17  Score=116.87  Aligned_cols=69  Identities=35%  Similarity=0.536  Sum_probs=64.9

Q ss_pred             CEEEE-EeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEE
Q 045158            1 MRIII-VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLT   70 (252)
Q Consensus         1 M~v~v-~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~   70 (252)
                      |++++ ++.|++++++++|++||..+|++|++++|+|+++|+|+|+|+.|+|..||++|||..++| +|++
T Consensus         1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~T-l~~~   70 (128)
T KOG0003|consen    1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST-LHLV   70 (128)
T ss_pred             CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhh-hhhh
Confidence            66777 669999999999999999999999999999999999999999999999999999999999 7765

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.64  E-value=1.3e-15  Score=104.79  Aligned_cols=70  Identities=33%  Similarity=0.420  Sum_probs=66.2

Q ss_pred             EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      |+|+|+ ..|+.+.+++++++||++||++|++.+|+|++.|+|+|+|+.|. |+.+|++|++++|+++++..
T Consensus         1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~-d~~~L~~~~i~~~~~l~l~~   71 (72)
T cd01809           1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLK-DDETLSEYKVEDGHTIHLVK   71 (72)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECC-CcCcHHHCCCCCCCEEEEEe
Confidence            579999 57899999999999999999999999999999999999999996 88999999999999999975

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.64  E-value=5.7e-16  Score=108.87  Aligned_cols=72  Identities=25%  Similarity=0.308  Sum_probs=66.6

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEE--EEcCeecCCCCCccccccccCCcEEEEEecC
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTL--AVSGWELVDGLDMEDYPIVKEGTKIDLTINP   73 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L--~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~   73 (252)
                      |+|+|+. .|+.+.+++++++||++||.+|++..|+|+++|+|  +|+|+.|+|+.+|++||+.++++ |+|++++
T Consensus         3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~-l~l~~~~   77 (80)
T cd01792           3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGST-VLLVVQN   77 (80)
T ss_pred             eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCE-EEEEEEc
Confidence            6888966 89999999999999999999999999999999999  89999999999999999997777 8888763

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.63  E-value=1.4e-15  Score=104.66  Aligned_cols=70  Identities=27%  Similarity=0.390  Sum_probs=65.5

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEe
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTI   71 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~   71 (252)
                      |+|+|+. .|+++.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+.++++ +++..
T Consensus         1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~-l~l~~   71 (72)
T cd01809           1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHT-IHLVK   71 (72)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCE-EEEEe
Confidence            8999966 8999999999999999999999999999999999999999999999999999997776 88763

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.63  E-value=1.1e-15  Score=105.59  Aligned_cols=69  Identities=17%  Similarity=0.277  Sum_probs=64.5

Q ss_pred             CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEE---cCeecCCCCCccccccccCCcEEEEE
Q 045158            1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAV---SGWELVDGLDMEDYPIVKEGTKIDLT   70 (252)
Q Consensus         1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~---~g~~L~d~~~L~~~~i~~~~t~i~l~   70 (252)
                      |.|.|+++|+.+.+++++++||++||++|++.+|+|+++|+|+|   .|+.|.|+.+|++|+|.+++. |+|+
T Consensus         1 ~~i~vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~-i~lm   72 (74)
T cd01813           1 VPVIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTK-IMMM   72 (74)
T ss_pred             CEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCE-EEEE
Confidence            67899999999999999999999999999999999999999996   899999999999999996655 7775

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.63  E-value=1.1e-15  Score=106.34  Aligned_cols=70  Identities=27%  Similarity=0.383  Sum_probs=64.6

Q ss_pred             EeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCCC
Q 045158           90 KFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDN  164 (252)
Q Consensus        90 ~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~~  164 (252)
                      +++|+++++++++++||++||++|+..+|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|++    +++||
T Consensus         4 ~l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~-d~~tL~~~~i~~g~~l~v~~----~~~gg   73 (76)
T cd01800           4 KLNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIK-DSNSLAYYNLANGTIIHLQL----KERGG   73 (76)
T ss_pred             ccCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcC-CCCcHHHcCCCCCCEEEEEE----ecCCC
Confidence            356899999999999999999999999999999999999999996 88999999999999999999    55554

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.63  E-value=1.2e-15  Score=107.25  Aligned_cols=71  Identities=21%  Similarity=0.238  Sum_probs=67.4

Q ss_pred             EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEE--EECceecccccccccccCCCCCCEEEEEee
Q 045158           85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLL--FFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L--~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      |+|+|+ ..|+++.+++++++||++||++|++..|+|+++|+|  .|+|+.|. |+.+|++|||.+|++|+|+++
T Consensus         3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~-D~~tL~~~gi~~gs~l~l~~~   76 (80)
T cd01792           3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQ-DGVPLVSQGLGPGSTVLLVVQ   76 (80)
T ss_pred             eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCC-CCCCHHHcCCCCCCEEEEEEE
Confidence            889999 589999999999999999999999999999999999  88999996 889999999999999999985

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=3.4e-16  Score=99.43  Aligned_cols=68  Identities=24%  Similarity=0.398  Sum_probs=63.2

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEE
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDL   69 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l   69 (252)
                      |.|.|++ +|+.+.++++|.|+|..+|..|++++||||.+|||+|+|+.+.|+.+-++|++..+|. +||
T Consensus         1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSV-lHl   69 (70)
T KOG0005|consen    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSV-LHL   69 (70)
T ss_pred             CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhcccee-Eee
Confidence            7888954 9999999999999999999999999999999999999999999999999999995554 876

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.61  E-value=1.7e-15  Score=103.96  Aligned_cols=68  Identities=25%  Similarity=0.402  Sum_probs=61.3

Q ss_pred             EEEE-e-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEE
Q 045158           87 IIIK-F-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVF  154 (252)
Q Consensus        87 i~v~-~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~  154 (252)
                      |+|+ . .|+++.+++++++||++||++|++..|+|+++|+|+|+|+.|+||..+|++|+|++|++|+|.
T Consensus         1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~   70 (71)
T cd01796           1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR   70 (71)
T ss_pred             CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence            4567 4 688899999999999999999999999999999999999999733478999999999999973

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.61  E-value=1.8e-15  Score=103.30  Aligned_cols=65  Identities=22%  Similarity=0.348  Sum_probs=62.1

Q ss_pred             ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEec
Q 045158          180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFK  244 (252)
Q Consensus       180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~  244 (252)
                      +..|+.++++|++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|.+|||++||+|+++-
T Consensus         2 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~   66 (69)
T PF00240_consen    2 TLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVI   66 (69)
T ss_dssp             ETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEE
T ss_pred             CCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEE
Confidence            46799999999999999999999999999999999999999999999999999999999999863

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]

Probab=99.61  E-value=5.1e-16  Score=118.55  Aligned_cols=71  Identities=17%  Similarity=0.300  Sum_probs=66.1

Q ss_pred             ceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEec
Q 045158          170 LSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFK  244 (252)
Q Consensus       170 ~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~  244 (252)
                      |.|+|+    ++.|+++.++|.+++||..+|.+|++++|||+++|+|+|.|+.|+|+++|+||+|+..+||+|+-
T Consensus         1 m~ifVk----~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l   71 (156)
T KOG0004|consen    1 MQIFVK----TLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL   71 (156)
T ss_pred             Cccchh----hccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEE
Confidence            345654    68899999999999999999999999999999999999999999999999999999999999973

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.61  E-value=3.4e-15  Score=101.87  Aligned_cols=66  Identities=38%  Similarity=0.560  Sum_probs=61.6

Q ss_pred             eCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecC
Q 045158            7 ANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINP   73 (252)
Q Consensus         7 ~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~   73 (252)
                      .+|+.+.+++++++||.+||++|+++.++|++.|+|+|+|+.|+|+.+|++|||.++++ |+|.+++
T Consensus         3 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~-I~l~~k~   68 (69)
T PF00240_consen    3 LSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGST-IHLVIKP   68 (69)
T ss_dssp             TTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEE-EEEEESS
T ss_pred             CCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCE-EEEEEec
Confidence            37899999999999999999999999999999999999999999999999999997776 8888754

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.61  E-value=3.2e-15  Score=103.25  Aligned_cols=69  Identities=20%  Similarity=0.353  Sum_probs=65.2

Q ss_pred             EEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEE---CceecccccccccccCCCCCCEEEEE
Q 045158           85 IHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFF---SGIELDDEFRNLSEYGIREFSEIIVF  154 (252)
Q Consensus        85 ~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~---~g~~L~~d~~~L~~y~i~~~s~i~l~  154 (252)
                      |.|.|++.|+.+.+++++++||++||++|++.+|+|+++|+|+|   .|+.|. |+.+|++|+|++|+.|+|+
T Consensus         1 ~~i~vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~-D~~~L~~~~i~~g~~i~lm   72 (74)
T cd01813           1 VPVIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAE-DDVKISALKLKPNTKIMMM   72 (74)
T ss_pred             CEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCC-CCcCHHHcCCCCCCEEEEE
Confidence            46889999999999999999999999999999999999999996   899996 8899999999999999986

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.60  E-value=3.4e-15  Score=102.50  Aligned_cols=69  Identities=17%  Similarity=0.234  Sum_probs=62.9

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEe
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTI   71 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~   71 (252)
                      |+|+|+. .|+ ..+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.++++ ||+..
T Consensus         1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~st-l~l~~   70 (71)
T cd01808           1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLT-VHLVI   70 (71)
T ss_pred             CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCE-EEEEE
Confidence            6788865 776 589999999999999999999999999999999999999999999999997777 88764

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.60  E-value=4.1e-15  Score=102.03  Aligned_cols=70  Identities=20%  Similarity=0.374  Sum_probs=65.9

Q ss_pred             EEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           85 IHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        85 ~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      ++|.|++.|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|. |+.+|++|++++|++|+++.
T Consensus         1 i~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~-d~~~L~~~~i~~g~~l~v~~   70 (71)
T cd01812           1 IRVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERD-DAETLDMSGVKDGSKVMLLE   70 (71)
T ss_pred             CEEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccC-ccCcHHHcCCCCCCEEEEec
Confidence            46889988999999999999999999999999999999999999999996 88999999999999999863

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.59  E-value=5.4e-15  Score=101.52  Aligned_cols=69  Identities=17%  Similarity=0.323  Sum_probs=63.3

Q ss_pred             EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      +.|+|+ ..|+ ..+++++++||++||++|+++.|+|+.+|+|.|+|+.|+ |+.+|++||+++|++||+.+
T Consensus         1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~-d~~tL~~~~i~~~stl~l~~   70 (71)
T cd01808           1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILK-DTDTLTQHNIKDGLTVHLVI   70 (71)
T ss_pred             CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcC-CCCcHHHcCCCCCCEEEEEE
Confidence            357888 5676 589999999999999999999999999999999999996 88999999999999999986

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.59  E-value=6e-15  Score=101.20  Aligned_cols=69  Identities=16%  Similarity=0.233  Sum_probs=64.6

Q ss_pred             CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEE
Q 045158            1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLT   70 (252)
Q Consensus         1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~   70 (252)
                      |+|+|+..|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.++++ |+++
T Consensus         1 i~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~-l~v~   69 (71)
T cd01812           1 IRVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSK-VMLL   69 (71)
T ss_pred             CEEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCE-EEEe
Confidence            67899889999999999999999999999999999999999999999999999999999997766 7765

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.58  E-value=3.6e-15  Score=103.78  Aligned_cols=69  Identities=20%  Similarity=0.259  Sum_probs=63.6

Q ss_pred             cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCC
Q 045158          181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRG  250 (252)
Q Consensus       181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~  250 (252)
                      ++|++++++|++++||++||++|+...|+|++.|+|+|+|+.|+|+++|++|+|++|++|+++.. ..+|
T Consensus         5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~-~~gg   73 (76)
T cd01800           5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLK-ERGG   73 (76)
T ss_pred             cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEe-cCCC
Confidence            57999999999999999999999999999999999999999999999999999999999998643 4444

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.58  E-value=4.4e-15  Score=101.91  Aligned_cols=64  Identities=19%  Similarity=0.280  Sum_probs=60.4

Q ss_pred             ecc-CCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCC-ccccccCCCCCCEEEE
Q 045158          179 SLL-NGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDN-CSLRWHGVEYGDILYV  242 (252)
Q Consensus       179 ~~~-~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~-~tL~~y~I~~gsti~l  242 (252)
                      ++. +|+++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+ .+|++|||++||+|+|
T Consensus         4 ~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l   69 (71)
T cd01796           4 YTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVL   69 (71)
T ss_pred             EECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEE
Confidence            345 799999999999999999999999999999999999999999987 6899999999999997

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=1.6e-15  Score=96.38  Aligned_cols=69  Identities=22%  Similarity=0.464  Sum_probs=64.9

Q ss_pred             EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEE
Q 045158           85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVF  154 (252)
Q Consensus        85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~  154 (252)
                      |.|.|+ ++|+.+.++++++++|..+|++|+++.||||.+|+|+|.|+.|. |+.+-.+|++..||++|++
T Consensus         1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~-DD~tA~~Y~~~~GSVlHlv   70 (70)
T KOG0005|consen    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMN-DDKTAAHYNLLGGSVLHLV   70 (70)
T ss_pred             CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhcccccc-ccccHHHhhhccceeEeeC
Confidence            457788 69999999999999999999999999999999999999999996 8899999999999999974

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.55  E-value=1.3e-14  Score=100.59  Aligned_cols=70  Identities=21%  Similarity=0.201  Sum_probs=59.4

Q ss_pred             CEEEEEe-CCeE--EEEEecCCCcHHHHHHHHHHHhC--CCCCceEEEEcCeecCCCCCccccc--cccCCcEEEEEe
Q 045158            1 MRIIIVA-NGHE--FVLEVGLQEPVLEIKRKIEQIFN--IPATSQTLAVSGWELVDGLDMEDYP--IVKEGTKIDLTI   71 (252)
Q Consensus         1 M~v~v~~-~g~~--~~l~v~~~~tV~~lK~~I~~~~~--i~~~~q~L~~~g~~L~d~~~L~~~~--i~~~~t~i~l~~   71 (252)
                      |.++|+. +++.  +.+++++++||.+||++|++..+  .|+++|||+|+|+.|+|+.+|++|.  +.++.| |||+.
T Consensus         2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~t-iHLV~   78 (79)
T cd01790           2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHM-VHLVC   78 (79)
T ss_pred             eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCce-EEEEe
Confidence            4678876 7777  56666999999999999999874  4579999999999999999999996  886666 99863

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=99.52  E-value=1.3e-13  Score=98.29  Aligned_cols=78  Identities=17%  Similarity=0.333  Sum_probs=72.1

Q ss_pred             CCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccc
Q 045158           82 HDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNR  160 (252)
Q Consensus        82 ~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~  160 (252)
                      +..|.|+|+ ..|+.+.++|.+++|++.||.+++++.|+|+++|+|+|+|+.|. ++.|+.+|++.+|++|++++    +
T Consensus         9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~-~~~T~~~l~m~d~d~I~v~l----~   83 (87)
T cd01763           9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIR-DNQTPDDLGMEDGDEIEVML----E   83 (87)
T ss_pred             CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECC-CCCCHHHcCCCCCCEEEEEE----e
Confidence            556899999 57999999999999999999999999999999999999999996 88999999999999999998    6


Q ss_pred             cCCC
Q 045158          161 LRDN  164 (252)
Q Consensus       161 ~~~~  164 (252)
                      ++||
T Consensus        84 l~GG   87 (87)
T cd01763          84 QTGG   87 (87)
T ss_pred             cccC
Confidence            6654

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=99.50  E-value=8.5e-14  Score=96.27  Aligned_cols=63  Identities=22%  Similarity=0.257  Sum_probs=58.4

Q ss_pred             CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCC-CCCEEEEEe
Q 045158           92 PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIR-EFSEIIVFL  155 (252)
Q Consensus        92 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~-~~s~i~l~~  155 (252)
                      .|.++.+++++++||++||++|++++|+|+++|+| |+|+.|.+|..+|++|+++ +|++++|.+
T Consensus        11 ~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~   74 (75)
T cd01799          11 HTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI   74 (75)
T ss_pred             CCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence            57889999999999999999999999999999999 9999996577999999998 889999864

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=99.49  E-value=4e-14  Score=96.75  Aligned_cols=54  Identities=24%  Similarity=0.450  Sum_probs=49.5

Q ss_pred             CCCcHHHHHHHHhhc--CCCC-CCceEEeecCeeecCCccccccCCCCCCEEEEecC
Q 045158          192 DSSTVNELRHLLLSS--KILP-REDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKG  245 (252)
Q Consensus       192 ~~~tV~~Lk~~i~~~--~gip-~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~  245 (252)
                      .++||++||++|+++  +|+| +++|+|+|.|+.|+|++||++|||++|++|+|+.+
T Consensus        19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~~   75 (75)
T cd01815          19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILRK   75 (75)
T ss_pred             ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEeC
Confidence            468999999999999  4675 99999999999999999999999999999999853

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>smart00213 UBQ Ubiquitin homologues

Probab=99.48  E-value=1.5e-13  Score=91.97  Aligned_cols=63  Identities=29%  Similarity=0.395  Sum_probs=59.0

Q ss_pred             CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccC
Q 045158            1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKE   63 (252)
Q Consensus         1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~   63 (252)
                      |+|+|+..++.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.++
T Consensus         1 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~   63 (64)
T smart00213        1 IELTVKTLDGTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDG   63 (64)
T ss_pred             CEEEEEECCceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCC
Confidence            899998755789999999999999999999999999999999999999999999999999854

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.48  E-value=1.8e-13  Score=94.85  Aligned_cols=70  Identities=17%  Similarity=0.153  Sum_probs=61.0

Q ss_pred             EEEEEE-eCCcE--EEEeeCCCccHHHHHHHHHHHhC--CCCccEEEEECceecccccccccccC--CCCCCEEEEEe
Q 045158           85 IHIIIK-FPSRK--FNIDVDRTDTVRSLKEKIHIIDG--TPIKRMLLFFSGIELDDEFRNLSEYG--IREFSEIIVFL  155 (252)
Q Consensus        85 ~~i~v~-~~g~~--~~l~v~~~~TV~~lK~~I~~~~g--ip~~~q~L~~~g~~L~~d~~~L~~y~--i~~~s~i~l~~  155 (252)
                      +.++|| ..++.  +.+++++++||++||++|++..+  .|+++|+|+|+|+.|. |+.+|++|.  +.++.+|||+.
T Consensus         2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLk-D~~tL~~~~~~~~~~~tiHLV~   78 (79)
T cd01790           2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLP-DHLKLRDVLRKQDEYHMVHLVC   78 (79)
T ss_pred             eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeecc-chhhHHHHhhcccCCceEEEEe
Confidence            678899 46766  66666899999999999999874  5589999999999996 889999996  99999999975

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=99.47  E-value=1.5e-13  Score=95.02  Aligned_cols=62  Identities=19%  Similarity=0.277  Sum_probs=57.7

Q ss_pred             cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeec-CCccccccCCC-CCCEEEEe
Q 045158          181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMR-DNCSLRWHGVE-YGDILYVF  243 (252)
Q Consensus       181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~-d~~tL~~y~I~-~gsti~l~  243 (252)
                      -+|.+++++|++++||++||++|++++|+|+++|+| |.|+.|. |+++|++|||+ +|++++|+
T Consensus        10 ~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~   73 (75)
T cd01799          10 SHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLY   73 (75)
T ss_pred             cCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEE
Confidence            468999999999999999999999999999999999 9998886 66999999998 89999986

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=99.44  E-value=9e-13  Score=94.03  Aligned_cols=72  Identities=21%  Similarity=0.302  Sum_probs=66.7

Q ss_pred             ccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEe
Q 045158          168 RRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVF  243 (252)
Q Consensus       168 ~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~  243 (252)
                      ..|.|+|+    ...|+.+.++|.+++|++.|+++++++.|+|+++++|+|+|+.|+++.|+++|++++||+|+++
T Consensus        10 ~~i~I~v~----~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~   81 (87)
T cd01763          10 EHINLKVK----GQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVM   81 (87)
T ss_pred             CeEEEEEE----CCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEE
Confidence            44666665    4679999999999999999999999999999999999999999999999999999999999986

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>smart00213 UBQ Ubiquitin homologues

Probab=99.44  E-value=4.3e-13  Score=89.73  Aligned_cols=64  Identities=33%  Similarity=0.562  Sum_probs=59.2

Q ss_pred             EEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCC
Q 045158           85 IHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFS  149 (252)
Q Consensus        85 ~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s  149 (252)
                      |+|+|+..++.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|. |+.+|++|++++|+
T Consensus         1 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~-d~~tL~~~~i~~~~   64 (64)
T smart00213        1 IELTVKTLDGTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLE-DDRTLADYNIQDGS   64 (64)
T ss_pred             CEEEEEECCceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECC-CCCCHHHcCCcCCC
Confidence            57899965578999999999999999999999999999999999999996 88999999999885

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=99.43  E-value=3.3e-13  Score=120.18  Aligned_cols=72  Identities=25%  Similarity=0.369  Sum_probs=66.7

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhC---CCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecC
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFN---IPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINP   73 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~---i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~   73 (252)
                      |+|+|+. .|+++.|+|++++||.+||.+|+...|   +|+++|+|+|+|+.|+|+.+|++|+|.++++ |++++++
T Consensus         1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~-Ivvmv~k   76 (378)
T TIGR00601         1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDF-VVVMVSK   76 (378)
T ss_pred             CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCE-EEEEecc
Confidence            8999965 999999999999999999999999998   9999999999999999999999999997777 7777654

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=99.43  E-value=1.7e-13  Score=93.69  Aligned_cols=53  Identities=23%  Similarity=0.241  Sum_probs=47.7

Q ss_pred             CCCcHHHHHHHHHHHh--CCC-CCceEEEEcCeecCCCCCccccccccCCcEEEEEe
Q 045158           18 LQEPVLEIKRKIEQIF--NIP-ATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTI   71 (252)
Q Consensus        18 ~~~tV~~lK~~I~~~~--~i~-~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~   71 (252)
                      .++||.+||++|+++.  |++ +++|+|+|+|+.|+|+.+|++|||.++++ |||+.
T Consensus        19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gst-lhLv~   74 (75)
T cd01815          19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGST-IHILR   74 (75)
T ss_pred             ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCE-EEEEe
Confidence            4789999999999995  575 99999999999999999999999998877 88864

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=99.40  E-value=6.6e-13  Score=93.99  Aligned_cols=62  Identities=21%  Similarity=0.150  Sum_probs=58.8

Q ss_pred             EEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           95 KFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        95 ~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      ..+++|++++||.+||.+|.+++++|+.+|+|+++|+.|.||.+||++|||..+|+|.|.++
T Consensus        16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid   77 (107)
T cd01795          16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD   77 (107)
T ss_pred             CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence            45788999999999999999999999999999999999999999999999999999999884

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=99.33  E-value=3.7e-12  Score=113.50  Aligned_cols=72  Identities=32%  Similarity=0.577  Sum_probs=67.9

Q ss_pred             EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhC---CCCccEEEEECceecccccccccccCCCCCCEEEEEeee
Q 045158           85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDG---TPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKT  157 (252)
Q Consensus        85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~g---ip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~  157 (252)
                      |+|+|| +.|+++.++|++++||.+||++|++..|   +|+++|+|+|+|+.|. |+.+|++|+|+++++|+++++.
T Consensus         1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~-Dd~tL~dy~I~e~~~Ivvmv~k   76 (378)
T TIGR00601         1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILS-DDKTVREYKIKEKDFVVVMVSK   76 (378)
T ss_pred             CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECC-CCCcHHHcCCCCCCEEEEEecc
Confidence            689999 6899999999999999999999999998   9999999999999996 8899999999999999999853

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=99.31  E-value=5.6e-12  Score=89.32  Aligned_cols=63  Identities=24%  Similarity=0.317  Sum_probs=56.4

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCC-CccccccccCCcEEEEEecC
Q 045158           10 HEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGL-DMEDYPIVKEGTKIDLTINP   73 (252)
Q Consensus        10 ~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~-~L~~~~i~~~~t~i~l~~~~   73 (252)
                      ...+++|++++||.+||.+|...+++||.+|+|+|+|+.|.|+. ||++||+.+++. |.|.+..
T Consensus        15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSv-l~Llide   78 (107)
T cd01795          15 GEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESV-ILLKADE   78 (107)
T ss_pred             CCceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCE-EEEEecC
Confidence            35678999999999999999999999999999999999999776 999999997776 7777643

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=99.27  E-value=5.2e-12  Score=92.15  Aligned_cols=71  Identities=14%  Similarity=0.115  Sum_probs=56.5

Q ss_pred             EEEEe-CCeEE-EEEecCCCcHHHHHHHHHHHh-----CCC--CCceEEEEcCeecCCCCCccccc------cccCCcEE
Q 045158            3 IIIVA-NGHEF-VLEVGLQEPVLEIKRKIEQIF-----NIP--ATSQTLAVSGWELVDGLDMEDYP------IVKEGTKI   67 (252)
Q Consensus         3 v~v~~-~g~~~-~l~v~~~~tV~~lK~~I~~~~-----~i~--~~~q~L~~~g~~L~d~~~L~~~~------i~~~~t~i   67 (252)
                      |.|++ .|..+ ...+++++||++||++|++..     ++|  +++|+|||+|+.|+|+.||++|+      +....| +
T Consensus         7 ~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~T-m   85 (113)
T cd01814           7 IKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVIT-M   85 (113)
T ss_pred             EEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceE-E
Confidence            34444 56444 567889999999999999444     555  99999999999999999999999      554455 8


Q ss_pred             EEEecCC
Q 045158           68 DLTINPF   74 (252)
Q Consensus        68 ~l~~~~~   74 (252)
                      |++++++
T Consensus        86 Hvvlr~~   92 (113)
T cd01814          86 HVVVQPP   92 (113)
T ss_pred             EEEecCC
Confidence            9888765

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=99.25  E-value=1.2e-11  Score=105.49  Aligned_cols=73  Identities=27%  Similarity=0.390  Sum_probs=67.4

Q ss_pred             CEEEEE-eCCeEEEEEecCCCcHHHHHHHHHHHhC--CCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158            1 MRIIIV-ANGHEFVLEVGLQEPVLEIKRKIEQIFN--IPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF   74 (252)
Q Consensus         1 M~v~v~-~~g~~~~l~v~~~~tV~~lK~~I~~~~~--i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~   74 (252)
                      |+|+|+ +.+..|++++.|++||.++|.+|+...|  .|+++|+|||+|+.|.|+.++.+|++..++. |.++++++
T Consensus         1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~f-iVvMlsK~   76 (340)
T KOG0011|consen    1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKF-IVVMLSKD   76 (340)
T ss_pred             CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCce-EEEEEecC
Confidence            899995 5999999999999999999999999999  9999999999999999999999999996666 77777655

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=99.23  E-value=4.4e-11  Score=81.03  Aligned_cols=66  Identities=33%  Similarity=0.589  Sum_probs=60.7

Q ss_pred             EE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           89 IK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        89 v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      |+ .+|+.+.+.+++++||.+||++|++.+|+|+++|+|.|+|+.|. |..+|.+|++.++++|++..
T Consensus         2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~-d~~~l~~~~v~~~~~i~v~~   68 (69)
T cd01769           2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILK-DDKTLSDYGIQDGSTLHLVL   68 (69)
T ss_pred             eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCC-CcCCHHHCCCCCCCEEEEEE
Confidence            45 35888999999999999999999999999999999999999995 88999999999999999864

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=99.20  E-value=1.8e-11  Score=109.67  Aligned_cols=73  Identities=25%  Similarity=0.387  Sum_probs=67.0

Q ss_pred             CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158            1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF   74 (252)
Q Consensus         1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~   74 (252)
                      ++|+|+..+..+.+.|..+.||.+||+.|+..+++++++++|||+||.|+|+.+|..|||.++.| |||+++..
T Consensus        16 irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~T-vHLVik~~   88 (493)
T KOG0010|consen   16 IRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHT-VHLVIKSQ   88 (493)
T ss_pred             eEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcE-EEEEeccC
Confidence            36778875558999999999999999999999999999999999999999999999999998877 99998754

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=99.20  E-value=5e-11  Score=80.73  Aligned_cols=63  Identities=27%  Similarity=0.420  Sum_probs=60.1

Q ss_pred             cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEe
Q 045158          181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVF  243 (252)
Q Consensus       181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~  243 (252)
                      .+|+.+.+++.++.||++||++|.+..|+|++.|.|.|+|+.|+|+.+|.+|++.+|++|++.
T Consensus         5 ~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~   67 (69)
T cd01769           5 LTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLV   67 (69)
T ss_pred             cCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEE
Confidence            468899999999999999999999999999999999999999999999999999999999986

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=99.18  E-value=4.3e-11  Score=87.36  Aligned_cols=73  Identities=18%  Similarity=0.150  Sum_probs=60.6

Q ss_pred             EEEEEEe-CCc-EEEEeeCCCccHHHHHHHHHHHh-----CCC--CccEEEEECceecccccccccccC------CCCCC
Q 045158           85 IHIIIKF-PSR-KFNIDVDRTDTVRSLKEKIHIID-----GTP--IKRMLLFFSGIELDDEFRNLSEYG------IREFS  149 (252)
Q Consensus        85 ~~i~v~~-~g~-~~~l~v~~~~TV~~lK~~I~~~~-----gip--~~~q~L~~~g~~L~~d~~~L~~y~------i~~~s  149 (252)
                      +.|.+++ .|. .-+..+.+++||++||++|++.+     |+|  +++|+|+|+|+.|+ |+.||++|+      +...+
T Consensus         5 ~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLe-D~~TL~d~~~p~g~~~~~~~   83 (113)
T cd01814           5 IEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILE-NSKTVGECRSPVGDIAGGVI   83 (113)
T ss_pred             EEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecC-CCCcHHHhCCcccccCCCce
Confidence            5566664 453 35778889999999999999555     455  99999999999997 889999999      77789


Q ss_pred             EEEEEeeec
Q 045158          150 EIIVFLKTM  158 (252)
Q Consensus       150 ~i~l~~~~~  158 (252)
                      |+||+++|.
T Consensus        84 TmHvvlr~~   92 (113)
T cd01814          84 TMHVVVQPP   92 (113)
T ss_pred             EEEEEecCC
Confidence            999999753

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=99.15  E-value=8.1e-11  Score=105.53  Aligned_cols=75  Identities=27%  Similarity=0.479  Sum_probs=69.7

Q ss_pred             CcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeec
Q 045158           83 DKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTM  158 (252)
Q Consensus        83 ~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~  158 (252)
                      ..+.|+||.++..+.+.|..+.||.+||++|..++++|+++++|+|.|+.|. |..+|..|||++|.||||+.|..
T Consensus        14 ~~irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILK-D~dTL~~~gI~Dg~TvHLVik~~   88 (493)
T KOG0010|consen   14 SLIRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILK-DDDTLKQYGIQDGHTVHLVIKSQ   88 (493)
T ss_pred             ceeEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCcccc-ChhhHHHcCCCCCcEEEEEeccC
Confidence            3478999987779999999999999999999999999999999999999995 99999999999999999999753

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=99.14  E-value=4e-10  Score=79.74  Aligned_cols=70  Identities=31%  Similarity=0.390  Sum_probs=58.6

Q ss_pred             EEEEEeC--CcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEE-ECce-----ecccccccccccCCCCCCEEEEEe
Q 045158           86 HIIIKFP--SRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF-FSGI-----ELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        86 ~i~v~~~--g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~-~~g~-----~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      .|+|..+  .......++++.||.+||++++..+|+|++.|+|. |.|.     .|.+|..+|++|++++|.+||+.-
T Consensus         3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD   80 (84)
T cd01789           3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID   80 (84)
T ss_pred             EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence            3455533  34456669999999999999999999999999995 7777     576788999999999999999975

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=99.06  E-value=8e-10  Score=75.83  Aligned_cols=70  Identities=29%  Similarity=0.387  Sum_probs=62.7

Q ss_pred             EEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCC-ccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           85 IHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPI-KRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        85 ~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~-~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      |+|.|+. +|+.+.+.+.+++++..|++..+++.|+|+ +..+|+|+|+.|. ++.|+++|++.+|++|++.+
T Consensus         1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~-~~~T~~~~~ied~d~Idv~I   72 (72)
T PF11976_consen    1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLD-PNDTPEDLGIEDGDTIDVII   72 (72)
T ss_dssp             EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE--TTSCHHHHT-STTEEEEEE-
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcC-CCCCHHHCCCCCCCEEEEEC
Confidence            5688884 688999999999999999999999999999 9999999999995 88999999999999999863

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=99.05  E-value=7.8e-10  Score=75.88  Aligned_cols=69  Identities=26%  Similarity=0.274  Sum_probs=61.7

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCC-CceEEEEcCeecCCCCCccccccccCCcEEEEE
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPA-TSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLT   70 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~-~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~   70 (252)
                      |+|+|+. +|+.+.+.|.+++++..|+...+++.|+|+ +..+|+|.|+.|+++.|+++|++.++++ |++.
T Consensus         1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~-Idv~   71 (72)
T PF11976_consen    1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDT-IDVI   71 (72)
T ss_dssp             EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEE-EEEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCE-EEEE
Confidence            6788865 889999999999999999999999999999 9999999999999999999999997776 7764

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=98.98  E-value=1e-09  Score=93.81  Aligned_cols=72  Identities=31%  Similarity=0.517  Sum_probs=68.2

Q ss_pred             EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhC--CCCccEEEEECceecccccccccccCCCCCCEEEEEeee
Q 045158           85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDG--TPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKT  157 (252)
Q Consensus        85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~g--ip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~  157 (252)
                      |.|+|| +.+.+|++++.+++||.++|.+|+...|  .|.++|+|+|+|+.|. |..++.+|++.+++-|.++++.
T Consensus         1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~-D~~tv~Eykv~E~~fiVvMlsK   75 (340)
T KOG0011|consen    1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILK-DETTVGEYKVKEKKFIVVMLSK   75 (340)
T ss_pred             CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceecc-CCcchhhhccccCceEEEEEec
Confidence            679999 7999999999999999999999999998  9999999999999995 9999999999999999999964

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=98.97  E-value=2.1e-09  Score=78.21  Aligned_cols=61  Identities=23%  Similarity=0.299  Sum_probs=55.6

Q ss_pred             CEEEE--EeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccc
Q 045158            1 MRIII--VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIV   61 (252)
Q Consensus         1 M~v~v--~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~   61 (252)
                      |-+++  +....++.+++.++.||.+||++|+.....||+.|+|+-.+..|+|++||++||+.
T Consensus         1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t   63 (119)
T cd01788           1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFT   63 (119)
T ss_pred             CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCcc
Confidence            55666  45778899999999999999999999999999999999778899999999999994

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=98.94  E-value=5.5e-09  Score=73.88  Aligned_cols=68  Identities=24%  Similarity=0.348  Sum_probs=54.9

Q ss_pred             EEEEEeC--CeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEE-EcCe-----ec-CCCCCccccccccCCcEEEEE
Q 045158            2 RIIIVAN--GHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLA-VSGW-----EL-VDGLDMEDYPIVKEGTKIDLT   70 (252)
Q Consensus         2 ~v~v~~~--g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~-~~g~-----~L-~d~~~L~~~~i~~~~t~i~l~   70 (252)
                      .|+|+.+  .......+++++||.+||.+++..+|+|+..|+|. |.|+     .| +|+.+|++||+.++.+ ||+.
T Consensus         3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~-IhVv   79 (84)
T cd01789           3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCR-IHVI   79 (84)
T ss_pred             EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCE-EEEE
Confidence            4566554  44455569999999999999999999999999994 7877     46 5666999999997766 8876

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=98.94  E-value=6.7e-09  Score=74.00  Aligned_cols=71  Identities=30%  Similarity=0.409  Sum_probs=57.4

Q ss_pred             EEEEEEeC---CcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEEC-c------eecccccccccccCCCCCCEEEEE
Q 045158           85 IHIIIKFP---SRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFS-G------IELDDEFRNLSEYGIREFSEIIVF  154 (252)
Q Consensus        85 ~~i~v~~~---g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~-g------~~L~~d~~~L~~y~i~~~s~i~l~  154 (252)
                      +.|+|..+   .......++.+.||.+||.+|+..+|+|++.|+|.+. .      ..+.+|..+|.+||+.+|.+||+.
T Consensus         2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~   81 (87)
T PF14560_consen    2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV   81 (87)
T ss_dssp             EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred             EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence            34555532   3478899999999999999999999999999999875 1      246568899999999999999987


Q ss_pred             e
Q 045158          155 L  155 (252)
Q Consensus       155 ~  155 (252)
                      -
T Consensus        82 D   82 (87)
T PF14560_consen   82 D   82 (87)
T ss_dssp             E
T ss_pred             e
Confidence            5

>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=98.87  E-value=2.2e-08  Score=67.94  Aligned_cols=68  Identities=29%  Similarity=0.552  Sum_probs=63.2

Q ss_pred             EEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           88 IIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        88 ~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      ++. ..|+.+.+++.+..+|..+|.+|+...|+|...|++.+.|+.|+ |+.++.+|+|..++++++..+
T Consensus         3 ~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~-d~~~l~~~~i~~~~~~~l~~~   71 (75)
T KOG0001|consen    3 FVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLE-DGRTLADYNIQEGSTLHLVLS   71 (75)
T ss_pred             EEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECc-CCCcHHHhCCCCCCEEEEEEe
Confidence            445 57899999999999999999999999999999999999999997 889999999999999999874

>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=98.86  E-value=1.5e-08  Score=68.71  Aligned_cols=64  Identities=20%  Similarity=0.316  Sum_probs=61.4

Q ss_pred             ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEe
Q 045158          180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVF  243 (252)
Q Consensus       180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~  243 (252)
                      +..|+++.+++...++++.+|.+|....|+|.+.|++.+.|..|+|+.+|.+|+|..++++++.
T Consensus         6 ~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~   69 (75)
T KOG0001|consen    6 TLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLV   69 (75)
T ss_pred             ecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEE
Confidence            4679999999999999999999999999999999999999999999999999999999999985

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=98.78  E-value=2.4e-08  Score=71.14  Aligned_cols=63  Identities=24%  Similarity=0.257  Sum_probs=51.8

Q ss_pred             CceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeec-C------eee-cCCccccccCCCCCCEEEEecC
Q 045158          183 GASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHK-Q------RIM-RDNCSLRWHGVEYGDILYVFKG  245 (252)
Q Consensus       183 g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~-g------~~l-~d~~tL~~y~I~~gsti~l~~~  245 (252)
                      .+..+..++.+.||++||.+|+..+|+|++.|+|.+. .      ..| +|+.+|.+||+++|++|++...
T Consensus        13 ~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D~   83 (87)
T PF14560_consen   13 QRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVDT   83 (87)
T ss_dssp             SSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE-
T ss_pred             CeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEeC
Confidence            3577788999999999999999999999999988876 1      234 4678999999999999999754

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=98.77  E-value=3.9e-08  Score=71.64  Aligned_cols=70  Identities=19%  Similarity=0.236  Sum_probs=60.0

Q ss_pred             EEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCC-------CCCCEEEEEee
Q 045158           86 HIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGI-------REFSEIIVFLK  156 (252)
Q Consensus        86 ~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i-------~~~s~i~l~~~  156 (252)
                      .+.|+-...++.+++.++.||.+||++|+.....|++.|+|+-.+..| +|++||++||+       +..+++-|.++
T Consensus         4 FlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvL-eD~kTL~d~g~t~~~akaq~pA~vgLa~r   80 (119)
T cd01788           4 FLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLL-DDGKTLGDCGFTSQTARPQAPATVGLAFR   80 (119)
T ss_pred             EEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceee-cccccHHHcCccccccccCCCCeEEEEEe
Confidence            344444566788999999999999999999999999999999666778 49999999999       77888888884

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>PLN02560 enoyl-CoA reductase

Probab=98.68  E-value=5.4e-08  Score=84.88  Aligned_cols=65  Identities=29%  Similarity=0.417  Sum_probs=57.0

Q ss_pred             CEEEEEe-CCeEE---EEEecCCCcHHHHHHHHHHHhCC-CCCceEEEEc---C----eecCCCCCccccccccCCc
Q 045158            1 MRIIIVA-NGHEF---VLEVGLQEPVLEIKRKIEQIFNI-PATSQTLAVS---G----WELVDGLDMEDYPIVKEGT   65 (252)
Q Consensus         1 M~v~v~~-~g~~~---~l~v~~~~tV~~lK~~I~~~~~i-~~~~q~L~~~---g----~~L~d~~~L~~~~i~~~~t   65 (252)
                      |+|.|+. +|+.+   ++++++++||+|||.+|+++.++ ++++|+|.+.   |    ..|+|+.+|++||+.++++
T Consensus         1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gst   77 (308)
T PLN02560          1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGT   77 (308)
T ss_pred             CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCce
Confidence            8999966 68887   79999999999999999999986 8999999983   3    3789999999999986665

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=98.66  E-value=2.7e-07  Score=68.50  Aligned_cols=73  Identities=16%  Similarity=0.193  Sum_probs=53.2

Q ss_pred             EEEEe-CCe-EEEEEecCCCcHHHHHHHHHHHhC-------CCCCceEEEEcCeecCCCCCccccccccCC-----cEEE
Q 045158            3 IIIVA-NGH-EFVLEVGLQEPVLEIKRKIEQIFN-------IPATSQTLAVSGWELVDGLDMEDYPIVKEG-----TKID   68 (252)
Q Consensus         3 v~v~~-~g~-~~~l~v~~~~tV~~lK~~I~~~~~-------i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~-----t~i~   68 (252)
                      +.+.+ +|. +-.+..++++||++||+.|...+-       ..++..||+|.|+.|+|+.+|+++.+..+.     +++|
T Consensus         5 lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vmH   84 (111)
T PF13881_consen    5 LKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVMH   84 (111)
T ss_dssp             EEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEEE
T ss_pred             EEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEEE
Confidence            33434 888 788999999999999999997652       245678999999999999999999987544     4688


Q ss_pred             EEecCCC
Q 045158           69 LTINPFL   75 (252)
Q Consensus        69 l~~~~~~   75 (252)
                      |++++..
T Consensus        85 lvvrp~~   91 (111)
T PF13881_consen   85 LVVRPNA   91 (111)
T ss_dssp             EEE-SSS
T ss_pred             EEecCCC
Confidence            8886553

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=98.64  E-value=1.8e-07  Score=62.77  Aligned_cols=68  Identities=26%  Similarity=0.375  Sum_probs=57.5

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEc---C--eecCCCCCccccccccCCcEEEEE
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVS---G--WELVDGLDMEDYPIVKEGTKIDLT   70 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~---g--~~L~d~~~L~~~~i~~~~t~i~l~   70 (252)
                      .+|+|+. +...+++.|+|..+|..+|++|....|++- .|||.|.   |  +.|.+..+|++|||..+ +.|.|.
T Consensus         1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~-~~i~ll   74 (80)
T cd01811           1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSK-TNICLL   74 (80)
T ss_pred             CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceec-cEEEEE
Confidence            4788966 788899999999999999999999999996 8999995   3  46899999999999944 435443

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>PLN02560 enoyl-CoA reductase

Probab=98.60  E-value=1.4e-07  Score=82.28  Aligned_cols=69  Identities=23%  Similarity=0.388  Sum_probs=58.6

Q ss_pred             EEEEEE-eCCcEE---EEeeCCCccHHHHHHHHHHHhCC-CCccEEEEEC---c----eecccccccccccCCCCCCEEE
Q 045158           85 IHIIIK-FPSRKF---NIDVDRTDTVRSLKEKIHIIDGT-PIKRMLLFFS---G----IELDDEFRNLSEYGIREFSEII  152 (252)
Q Consensus        85 ~~i~v~-~~g~~~---~l~v~~~~TV~~lK~~I~~~~gi-p~~~q~L~~~---g----~~L~~d~~~L~~y~i~~~s~i~  152 (252)
                      |.|.|+ .+|+.+   ++++++++||++||.+|+++.++ ++++|+|.+.   |    ..|. |+.+|++||+++|++|+
T Consensus         1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~-d~ktL~d~gv~~gstLy   79 (308)
T PLN02560          1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLD-DSKSLKDYGLGDGGTVV   79 (308)
T ss_pred             CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccC-CCCCHHhcCCCCCceEE
Confidence            567788 467776   79999999999999999999986 8999999973   3    3775 88999999999999987


Q ss_pred             EE
Q 045158          153 VF  154 (252)
Q Consensus       153 l~  154 (252)
                      +-
T Consensus        80 ~k   81 (308)
T PLN02560         80 FK   81 (308)
T ss_pred             EE
Confidence            64

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=98.55  E-value=4.2e-07  Score=60.99  Aligned_cols=70  Identities=23%  Similarity=0.316  Sum_probs=58.7

Q ss_pred             EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEEC---c-eecccccccccccCCCCCCEEEEEe
Q 045158           85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFS---G-IELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~---g-~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      +++.|+ +....+.+.|+|..+|..+|++|....|++- .|+|.|.   | +.|..+..+|++|||..+..|.|+-
T Consensus         1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lle   75 (80)
T cd01811           1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLE   75 (80)
T ss_pred             CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEe
Confidence            368888 5666799999999999999999999999985 9999982   2 3333599999999999988888765

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=98.52  E-value=1e-06  Score=65.36  Aligned_cols=73  Identities=18%  Similarity=0.226  Sum_probs=54.7

Q ss_pred             EEEEEEe-CCc-EEEEeeCCCccHHHHHHHHHHHh--CC-----CCccEEEEECceecccccccccccCCCCCC------
Q 045158           85 IHIIIKF-PSR-KFNIDVDRTDTVRSLKEKIHIID--GT-----PIKRMLLFFSGIELDDEFRNLSEYGIREFS------  149 (252)
Q Consensus        85 ~~i~v~~-~g~-~~~l~v~~~~TV~~lK~~I~~~~--gi-----p~~~q~L~~~g~~L~~d~~~L~~y~i~~~s------  149 (252)
                      +.+.+++ +|. ..++.+++++||++||+.|...+  +.     .++..+|++.|+.|+ |+.+|+++++..|.      
T Consensus         3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~-d~~tL~~~~~~~~~~~~~~~   81 (111)
T PF13881_consen    3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILE-DNKTLSDCRLPSGETPGGPT   81 (111)
T ss_dssp             EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE--SSSBTGGGT--TTSETT--E
T ss_pred             EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecC-CcCcHHHhCCCCCCCCCCCE
Confidence            4455553 787 78899999999999999999866  21     367899999999996 99999999998766      


Q ss_pred             EEEEEeeec
Q 045158          150 EIIVFLKTM  158 (252)
Q Consensus       150 ~i~l~~~~~  158 (252)
                      ++||+++|.
T Consensus        82 vmHlvvrp~   90 (111)
T PF13881_consen   82 VMHLVVRPN   90 (111)
T ss_dssp             EEEEEE-SS
T ss_pred             EEEEEecCC
Confidence            678888654

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=98.42  E-value=7.4e-07  Score=61.90  Aligned_cols=52  Identities=21%  Similarity=0.219  Sum_probs=46.1

Q ss_pred             CCCccHHHHHHHHHHHhC-CCCccEEEE--ECceecccccccccccCCCCCCEEEE
Q 045158          101 DRTDTVRSLKEKIHIIDG-TPIKRMLLF--FSGIELDDEFRNLSEYGIREFSEIIV  153 (252)
Q Consensus       101 ~~~~TV~~lK~~I~~~~g-ip~~~q~L~--~~g~~L~~d~~~L~~y~i~~~s~i~l  153 (252)
                      .++.||.+||..|++..+ +|+++|+|.  +.|+.|. |+.+|.+||+.+|++|++
T Consensus        20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~-d~~tL~~~gv~~g~~lyv   74 (77)
T cd01801          20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLK-DDDTLVDLGVGAGATLYV   74 (77)
T ss_pred             CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccC-CcccHhhcCCCCCCEEEE
Confidence            478999999999999875 589999986  7899995 888999999999999875

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=5.5e-07  Score=87.21  Aligned_cols=71  Identities=18%  Similarity=0.336  Sum_probs=66.4

Q ss_pred             EEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeec
Q 045158           86 HIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTM  158 (252)
Q Consensus        86 ~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~  158 (252)
                      .+.|| ++.++.++.+...+||.+||..|.+...|+.+.|+|+|.|+.|. |.+++.+|+| +|-+|||+-+|.
T Consensus         4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~-~~k~vq~~~v-dgk~~hlverpp   75 (1143)
T KOG4248|consen    4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQ-DDKKVQEYNV-DGKVIHLVERPP   75 (1143)
T ss_pred             ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeec-cchhhhhccC-CCeEEEeeccCC
Confidence            47888 68899999999999999999999999999999999999999997 8899999999 999999999754

>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=5.2e-07  Score=87.35  Aligned_cols=65  Identities=17%  Similarity=0.301  Sum_probs=62.6

Q ss_pred             eccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEec
Q 045158          179 SLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFK  244 (252)
Q Consensus       179 ~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~  244 (252)
                      |++..++.++.|...+||.++|+.|.++.+||-+.|+++|.||+|.|++++.+|+| +|-+|+|+.
T Consensus         8 ktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlve   72 (1143)
T KOG4248|consen    8 KTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVE   72 (1143)
T ss_pred             eecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeec
Confidence            47889999999999999999999999999999999999999999999999999999 999999984

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=98.35  E-value=1.4e-06  Score=60.91  Aligned_cols=68  Identities=22%  Similarity=0.284  Sum_probs=42.2

Q ss_pred             CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEc---Ceec--CCCCCccccccccCCcEEEE
Q 045158            1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVS---GWEL--VDGLDMEDYPIVKEGTKIDL   69 (252)
Q Consensus         1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~---g~~L--~d~~~L~~~~i~~~~t~i~l   69 (252)
                      |-|.|......+.+++++++|+.+|+++|++.+++|.+.|.|+.+   ...+  .++.+|+++||++++. +.|
T Consensus         5 milRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdm-lyL   77 (80)
T PF11543_consen    5 MILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDM-LYL   77 (80)
T ss_dssp             -EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-E-EE-
T ss_pred             EEEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccE-EEE
Confidence            456666677889999999999999999999999999999988643   2345  4567999999997765 544

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=98.34  E-value=9.6e-07  Score=61.33  Aligned_cols=52  Identities=27%  Similarity=0.366  Sum_probs=46.3

Q ss_pred             cCCCcHHHHHHHHhhcCC-CCCCceEEe--ecCeeecCCccccccCCCCCCEEEE
Q 045158          191 QDSSTVNELRHLLLSSKI-LPREDYIFI--HKQRIMRDNCSLRWHGVEYGDILYV  242 (252)
Q Consensus       191 ~~~~tV~~Lk~~i~~~~g-ip~~~~~l~--~~g~~l~d~~tL~~y~I~~gsti~l  242 (252)
                      .++.||++||+.|.+..+ +|++.|+|.  +.|+.|.|+.+|.+|||++|++||+
T Consensus        20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv   74 (77)
T cd01801          20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV   74 (77)
T ss_pred             CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence            467899999999988865 688998885  8999999999999999999999986

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=98.32  E-value=1.3e-06  Score=60.95  Aligned_cols=72  Identities=21%  Similarity=0.205  Sum_probs=44.1

Q ss_pred             CcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECc---eec-ccccccccccCCCCCCEEEEE
Q 045158           83 DKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSG---IEL-DDEFRNLSEYGIREFSEIIVF  154 (252)
Q Consensus        83 ~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g---~~L-~~d~~~L~~y~i~~~s~i~l~  154 (252)
                      ..|-|.|+.+.-...+++++++|+.+|+++|++..++|...|.|..+.   .++ .+++.+|+++||+.|+.|.|.
T Consensus         3 ~~milRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~   78 (80)
T PF11543_consen    3 SSMILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK   78 (80)
T ss_dssp             ---EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred             ccEEEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence            356777777666788899999999999999999999999999886422   244 247789999999999998763

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>cd00196 UBQ Ubiquitin-like proteins

Probab=98.29  E-value=2.8e-06  Score=54.97  Aligned_cols=63  Identities=25%  Similarity=0.383  Sum_probs=58.2

Q ss_pred             CCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEec
Q 045158          182 NGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFK  244 (252)
Q Consensus       182 ~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~  244 (252)
                      .|....+.+.+..|++++++.|.++.|++++.+.|.++|..+++...+.+|++.++++|++..
T Consensus         6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~   68 (69)
T cd00196           6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP   68 (69)
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence            477888888899999999999999999999999999999999999988999999999999864

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>cd00196 UBQ Ubiquitin-like proteins

Probab=98.19  E-value=9.6e-06  Score=52.34  Aligned_cols=63  Identities=25%  Similarity=0.372  Sum_probs=56.8

Q ss_pred             CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           92 PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        92 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      .+....+.+.+..|+.+||++|.++.|+++..+.|.++|..+. +...+.+|++.++++|++..
T Consensus         6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~   68 (69)
T cd00196           6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILP-DSLTLEDYGLQDGDELVLVP   68 (69)
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECC-CCCcHHHcCCCCCCEEEEEe
Confidence            4677888899999999999999999999999999999999996 77777899999999999863

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=7.4e-06  Score=70.00  Aligned_cols=69  Identities=14%  Similarity=0.340  Sum_probs=59.8

Q ss_pred             CEEEEEe----CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEE
Q 045158            1 MRIIIVA----NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLT   70 (252)
Q Consensus         1 M~v~v~~----~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~   70 (252)
                      |.+.|.+    ....++++|+.+.+|.+||+.++.+.|+|+++-+++|+|+.|+++.++..+.+...+. +|.+
T Consensus         1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~-~hi~   73 (446)
T KOG0006|consen    1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSA-THIM   73 (446)
T ss_pred             CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccch-hhhh
Confidence            6667755    3455789999999999999999999999999999999999999999999888876666 6665

>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=9.3e-06  Score=73.00  Aligned_cols=72  Identities=15%  Similarity=0.312  Sum_probs=66.2

Q ss_pred             EEEEEEeCCcEEEEe-eCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeee
Q 045158           85 IHIIIKFPSRKFNID-VDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKT  157 (252)
Q Consensus        85 ~~i~v~~~g~~~~l~-v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~  157 (252)
                      ..|.|++.|+.+.++ ++.++|+..||+++...+|+||++|+++..|..+. |+-.+....|+++.+++|+-..
T Consensus         4 ~~v~VKW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~-dd~~~~al~iKpn~~lmMmGt~   76 (473)
T KOG1872|consen    4 DTVIVKWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAK-DDVDWGALQIKPNETLMMMGTA   76 (473)
T ss_pred             ceEeeeecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEeccccc-ccccccccccCCCCEEEeeccc
Confidence            458889999999998 99999999999999999999999999999999996 7678899999999999998753

>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=9.6e-06  Score=69.30  Aligned_cols=72  Identities=19%  Similarity=0.428  Sum_probs=62.2

Q ss_pred             EEEEEEeC--C--cEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEE-eee
Q 045158           85 IHIIIKFP--S--RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVF-LKT  157 (252)
Q Consensus        85 ~~i~v~~~--g--~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~-~~~  157 (252)
                      |.++|.+.  |  ..++++|+.+.+|.+||+.++.+.|+|+++.+++|.|++|. |+.++..+.+..-|.+|++ ++|
T Consensus         1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs-~~ttv~~cDL~qqs~~hi~~lRP   77 (446)
T KOG0006|consen    1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELS-NDTTVQNCDLSQQSATHIMLLRP   77 (446)
T ss_pred             CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccc-cCceeecccccccchhhhhccCc
Confidence            34566653  2  34889999999999999999999999999999999999997 8899999999999999988 444

>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]

Probab=98.00  E-value=1.1e-05  Score=56.81  Aligned_cols=62  Identities=24%  Similarity=0.330  Sum_probs=53.6

Q ss_pred             CEEEE--EeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEE-c-CeecCCCCCcccccccc
Q 045158            1 MRIII--VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAV-S-GWELVDGLDMEDYPIVK   62 (252)
Q Consensus         1 M~v~v--~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~-~-g~~L~d~~~L~~~~i~~   62 (252)
                      |.+++  +....++.+++.++.||-+||.+++....-|++.|+|+. . .+.|+|..+|+++|...
T Consensus         1 ~~~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts   66 (110)
T KOG4495|consen    1 MDVFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTS   66 (110)
T ss_pred             CceeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccccc
Confidence            44555  557788999999999999999999999999999999997 3 36899999999998863

>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=1.5e-05  Score=71.71  Aligned_cols=71  Identities=18%  Similarity=0.243  Sum_probs=65.4

Q ss_pred             EEEEeCCeEEEEE-ecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158            3 IIIVANGHEFVLE-VGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF   74 (252)
Q Consensus         3 v~v~~~g~~~~l~-v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~   74 (252)
                      |.|+..|+.+.++ ++.++|+..+|+++...+|+||++|++.+.|..+.|+-.+...+|+++.+ ++++.++.
T Consensus         6 v~VKW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~-lmMmGt~e   77 (473)
T KOG1872|consen    6 VIVKWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNET-LMMMGTAE   77 (473)
T ss_pred             EeeeecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCE-EEeecccc
Confidence            6678899999998 99999999999999999999999999999999999999999999997777 88887655

>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=3.9e-06  Score=54.66  Aligned_cols=62  Identities=15%  Similarity=0.172  Sum_probs=54.6

Q ss_pred             eCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEE
Q 045158            7 ANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDL   69 (252)
Q Consensus         7 ~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l   69 (252)
                      +-|+...+.++++|||+|+|..|+.+.|-.++...|--++..+.|+-+|++|.|.++-. +.|
T Consensus         9 rLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~-lel   70 (73)
T KOG3493|consen    9 RLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMN-LEL   70 (73)
T ss_pred             hcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCcc-EEE
Confidence            36899999999999999999999999999999988888888999999999999984433 544

>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]

Probab=97.80  E-value=4.3e-05  Score=53.91  Aligned_cols=60  Identities=22%  Similarity=0.300  Sum_probs=49.9

Q ss_pred             EEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEE-Cc-eecccccccccccCC
Q 045158           85 IHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFF-SG-IELDDEFRNLSEYGI  145 (252)
Q Consensus        85 ~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~-~g-~~L~~d~~~L~~y~i  145 (252)
                      |.+.|+-...++.++.+++.||.+||++++....-|++.|+|+. .. ..| +|+.+|+++|.
T Consensus         3 ~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL-~D~ktL~d~gf   64 (110)
T KOG4495|consen    3 VFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLL-DDGKTLGDCGF   64 (110)
T ss_pred             eeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHh-hccchhhhccc
Confidence            34555555667889999999999999999999999999999987 33 355 69999999965

>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=1.8e-05  Score=51.57  Aligned_cols=68  Identities=19%  Similarity=0.305  Sum_probs=56.3

Q ss_pred             EEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEE
Q 045158           86 HIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVF  154 (252)
Q Consensus        86 ~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~  154 (252)
                      ++.++ .-|+...+...+++||.++|..|+.++|..++...|---+..+ +|+-+|++|.|.+|-.+.|-
T Consensus         3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~-kd~I~L~dyeihdg~~lely   71 (73)
T KOG3493|consen    3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIF-KDHITLSDYEIHDGMNLELY   71 (73)
T ss_pred             eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhh-hcccceeeEEeccCccEEEe
Confidence            34444 3478888999999999999999999999999988776555567 59999999999999887764

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=97.64  E-value=0.0002  Score=47.77  Aligned_cols=62  Identities=13%  Similarity=0.117  Sum_probs=47.5

Q ss_pred             cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEE
Q 045158          181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYV  242 (252)
Q Consensus       181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l  242 (252)
                      .++++..+.|.++.++.++-++.++++|+..+.+.|.|+++.++-+-+++--|+.+|+++.|
T Consensus         4 ~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL   65 (65)
T PF11470_consen    4 YNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL   65 (65)
T ss_dssp             TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred             cCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence            56899999999999999999999999999999999999999999999999999999999876

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=97.54  E-value=0.0004  Score=48.34  Aligned_cols=60  Identities=25%  Similarity=0.364  Sum_probs=45.7

Q ss_pred             CceEEEEecCCCcHHHHHHHHhhcCCCCCC------ceEEe-ecCeeecCCccccccCCCCCCEEEE
Q 045158          183 GASIPLEMQDSSTVNELRHLLLSSKILPRE------DYIFI-HKQRIMRDNCSLRWHGVEYGDILYV  242 (252)
Q Consensus       183 g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~------~~~l~-~~g~~l~d~~tL~~y~I~~gsti~l  242 (252)
                      |+.+-+.++..-+|++|...|.+..+.+..      .+.|. -+|..|.++.||++|||.+||.++|
T Consensus        12 ~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L   78 (79)
T PF08817_consen   12 GRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL   78 (79)
T ss_dssp             --EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence            588889999999999999999998776432      36777 6889999999999999999999987

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=97.47  E-value=0.00059  Score=45.51  Aligned_cols=62  Identities=15%  Similarity=0.110  Sum_probs=46.0

Q ss_pred             eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEE
Q 045158           91 FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIV  153 (252)
Q Consensus        91 ~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l  153 (252)
                      .+++...+.+.++.|+.++-+...+++|+.++...|.++++.| |-+.++.-.|+.+|+.+.|
T Consensus         4 ~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~l-dlslp~R~snL~n~akLeL   65 (65)
T PF11470_consen    4 YNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPL-DLSLPFRLSNLPNNAKLEL   65 (65)
T ss_dssp             TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEE-SSS-BHHHH---SS-EEEE
T ss_pred             cCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEe-ccccceeecCCCCCCEEeC
Confidence            4678899999999999999999999999999999999999999 5889999999999998865

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=0.0013  Score=47.03  Aligned_cols=71  Identities=14%  Similarity=0.206  Sum_probs=64.2

Q ss_pred             CCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCCC
Q 045158          182 NGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGGY  252 (252)
Q Consensus       182 ~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~~  252 (252)
                      .+....+.|..+.+...|++.-+++.|++.+..+|.|+|+.+.+.+|=++.+.++||.|.++---+.|.||
T Consensus        29 d~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~~~   99 (99)
T KOG1769|consen   29 DGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGFGT   99 (99)
T ss_pred             CCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCCCC
Confidence            46777889999999999999999999999999999999999999999999999999999998766666554

>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]

Probab=97.18  E-value=0.0057  Score=43.84  Aligned_cols=70  Identities=16%  Similarity=0.269  Sum_probs=62.1

Q ss_pred             EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      +.+.|+ ..+....+.|..+.+...|+..-+++.|++.+..+..|+|+.+. +..|=++.+..+|+.|.+..
T Consensus        21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~-~~~TP~~L~mEd~D~Iev~~   91 (99)
T KOG1769|consen   21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIR-ETHTPADLEMEDGDEIEVVQ   91 (99)
T ss_pred             EEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcC-CCCChhhhCCcCCcEEEEEe
Confidence            344444 35677889999999999999999999999999999999999995 88999999999999999886

>COG5417 Uncharacterized small protein [Function unknown]

Probab=97.15  E-value=0.0038  Score=42.12  Aligned_cols=64  Identities=22%  Similarity=0.304  Sum_probs=53.2

Q ss_pred             eccCCceEEEEecCCCcHHHHHHHHhhcCC--CC-CC--ceEEeecCeeecCCccccccCCCCCCEEEE
Q 045158          179 SLLNGASIPLEMQDSSTVNELRHLLLSSKI--LP-RE--DYIFIHKQRIMRDNCSLRWHGVEYGDILYV  242 (252)
Q Consensus       179 ~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~g--ip-~~--~~~l~~~g~~l~d~~tL~~y~I~~gsti~l  242 (252)
                      ..++|+++-+.++...++..|-..+-+...  ++ .+  ..+..-+++.|-+++.|.+|+|.+||.+.+
T Consensus        12 t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei   80 (81)
T COG5417          12 TNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI   80 (81)
T ss_pred             EecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence            457899999999999999988888766543  33 23  357788999999999999999999999876

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=96.99  E-value=0.0022  Score=44.59  Aligned_cols=68  Identities=18%  Similarity=0.283  Sum_probs=48.1

Q ss_pred             EEEEEEeC-CcEEEEeeCCCccHHHHHHHHHHHhCCCCc------cEEEE-ECceecccccccccccCCCCCCEEEE
Q 045158           85 IHIIIKFP-SRKFNIDVDRTDTVRSLKEKIHIIDGTPIK------RMLLF-FSGIELDDEFRNLSEYGIREFSEIIV  153 (252)
Q Consensus        85 ~~i~v~~~-g~~~~l~v~~~~TV~~lK~~I~~~~gip~~------~q~L~-~~g~~L~~d~~~L~~y~i~~~s~i~l  153 (252)
                      ++|.|.+. |+.+.+.+..+.+|++|...|.+..+.+..      ...|. -+|..|. ++.+|+++||.+|+.+.|
T Consensus         3 ~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~-~~~tL~~~gV~dGd~L~L   78 (79)
T PF08817_consen    3 CRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLD-PDQTLADAGVRDGDVLVL   78 (79)
T ss_dssp             EEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEE-TTSBCGGGT--TT-EEEE
T ss_pred             EEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccC-CcCcHhHcCCCCCCEEEe
Confidence            45667765 588999999999999999999998876432      23455 5788995 899999999999999986

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=96.96  E-value=0.0022  Score=46.43  Aligned_cols=56  Identities=18%  Similarity=0.140  Sum_probs=43.2

Q ss_pred             EEEEe--CCeEEEEEec--CCCcHHHHHHHHHHHhC--CCCCceEEEEcCeecCCCCCcccc
Q 045158            3 IIIVA--NGHEFVLEVG--LQEPVLEIKRKIEQIFN--IPATSQTLAVSGWELVDGLDMEDY   58 (252)
Q Consensus         3 v~v~~--~g~~~~l~v~--~~~tV~~lK~~I~~~~~--i~~~~q~L~~~g~~L~d~~~L~~~   58 (252)
                      |.|.+  +-..+.+++.  .+.||..||..|.+...  ..-..+||+|+|+.|.|+..|+.-
T Consensus         3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~   64 (97)
T PF10302_consen    3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE   64 (97)
T ss_pred             EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence            44555  3344677777  88999999999999983  344568999999999999877654

They contain a characteristic GFDRL sequence motif.

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=96.88  E-value=0.0072  Score=47.52  Aligned_cols=76  Identities=22%  Similarity=0.235  Sum_probs=54.5

Q ss_pred             EEEEEE-eCC----cEEEEeeCCCccHHHHHHHHHHHhCCCCccE-EEEE-Cceec-ccccccccccCCCCC----CEEE
Q 045158           85 IHIIIK-FPS----RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRM-LLFF-SGIEL-DDEFRNLSEYGIREF----SEII  152 (252)
Q Consensus        85 ~~i~v~-~~g----~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q-~L~~-~g~~L-~~d~~~L~~y~i~~~----s~i~  152 (252)
                      |+|+|. ++|    .++.+.+..+.||.+|+..|.+..++|...| .|.+ .+..| ..+...++.+.-...    .+++
T Consensus         1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~   80 (162)
T PF13019_consen    1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR   80 (162)
T ss_pred             CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence            578899 688    5788999999999999999999999998885 4554 34454 235556666654333    2455


Q ss_pred             EEeeeccccCCC
Q 045158          153 VFLKTMNRLRDN  164 (252)
Q Consensus       153 l~~~~~~~~~~~  164 (252)
                      |.+    |++||
T Consensus        81 l~~----rl~GG   88 (162)
T PF13019_consen   81 LSL----RLRGG   88 (162)
T ss_pred             EEE----eccCC
Confidence            555    67765

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=96.81  E-value=0.0037  Score=45.21  Aligned_cols=57  Identities=26%  Similarity=0.362  Sum_probs=41.9

Q ss_pred             EEEEeCC--cEEEEeeC--CCccHHHHHHHHHHHhC--CCCccEEEEECceecccccccccccC
Q 045158           87 IIIKFPS--RKFNIDVD--RTDTVRSLKEKIHIIDG--TPIKRMLLFFSGIELDDEFRNLSEYG  144 (252)
Q Consensus        87 i~v~~~g--~~~~l~v~--~~~TV~~lK~~I~~~~g--ip~~~q~L~~~g~~L~~d~~~L~~y~  144 (252)
                      |.|+|+.  .-..+++.  .+.||..||++|.+..+  ..-.+++|+|+|+.|. |+..|+..-
T Consensus         3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~-d~t~l~~~l   65 (97)
T PF10302_consen    3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLN-DHTDLSSEL   65 (97)
T ss_pred             EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccC-ccchhhhhh
Confidence            5566532  22556666  78999999999999883  4455788999999996 877666543

They contain a characteristic GFDRL sequence motif.

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=96.76  E-value=0.02  Score=39.86  Aligned_cols=72  Identities=24%  Similarity=0.334  Sum_probs=59.0

Q ss_pred             CcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCcc-EEEE--ECceeccccc-ccccccCCCCCCEEEEE
Q 045158           83 DKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKR-MLLF--FSGIELDDEF-RNLSEYGIREFSEIIVF  154 (252)
Q Consensus        83 ~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~-q~L~--~~g~~L~~d~-~~L~~y~i~~~s~i~l~  154 (252)
                      ....|-|++ +|+.+.-.+..++||.+|..-|......+... ..|.  |-.+.+.++. .+|.+.|+.+.++|++.
T Consensus         5 ~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~   81 (82)
T PF00789_consen    5 DVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE   81 (82)
T ss_dssp             SEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred             CEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence            456888996 58889999999999999999999888776664 6675  5677886444 79999999999999874

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A

Probab=96.72  E-value=0.031  Score=46.42  Aligned_cols=109  Identities=14%  Similarity=0.115  Sum_probs=60.8

Q ss_pred             eEEEEEecCCCcHHHHHHHHHHHhCCCCC---ceEEE--EcCe---ecCCCCCccccccccCCcEEEEEecCCCCccCC-
Q 045158           10 HEFVLEVGLQEPVLEIKRKIEQIFNIPAT---SQTLA--VSGW---ELVDGLDMEDYPIVKEGTKIDLTINPFLQSSFN-   80 (252)
Q Consensus        10 ~~~~l~v~~~~tV~~lK~~I~~~~~i~~~---~q~L~--~~g~---~L~d~~~L~~~~i~~~~t~i~l~~~~~~~~~~~-   80 (252)
                      +.+.+-|+.+.||.||-.+++.+.+++..   ..+|+  ++++   .+..+.++.+.  . +...+.+-.-|....... 
T Consensus        34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~-~~~~~r~E~ip~ee~~~~~  110 (213)
T PF14533_consen   34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--N-DYITLRIEEIPEEELNLDD  110 (213)
T ss_dssp             -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS-----TTEEEEEE--GGGSS--T
T ss_pred             eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--c-CcceeeeecCChHHhhccc
Confidence            35788999999999999999999999765   33433  4555   47777777777  2 222244443333322222 


Q ss_pred             -cCCcEEEEEE-eC-------CcEEEEeeCCCccHHHHHHHHHHHhCCCC
Q 045158           81 -QHDKIHIIIK-FP-------SRKFNIDVDRTDTVRSLKEKIHIIDGTPI  121 (252)
Q Consensus        81 -~~~~~~i~v~-~~-------g~~~~l~v~~~~TV~~lK~~I~~~~gip~  121 (252)
                       ..+.+.|.|- +.       |-.|.+.|.+.+|..++|++|++++|+|-
T Consensus       111 ~~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~  160 (213)
T PF14533_consen  111 ESEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSD  160 (213)
T ss_dssp             T--TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---H
T ss_pred             ccccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCCh
Confidence             1234566666 42       45578899999999999999999999973

>PRK06437 hypothetical protein; Provisional

Probab=96.62  E-value=0.013  Score=39.30  Aligned_cols=59  Identities=25%  Similarity=0.331  Sum_probs=49.0

Q ss_pred             CCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158          182 NGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG  251 (252)
Q Consensus       182 ~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~  251 (252)
                      +++..+++++...||++|-+++    |++++...+..+|+...     .++-+++||+|.++  +..+||
T Consensus         9 g~~~~~~~i~~~~tv~dLL~~L----gi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv--~~V~GG   67 (67)
T PRK06437          9 GHINKTIEIDHELTVNDIIKDL----GLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLIL--EVFSGG   67 (67)
T ss_pred             CCcceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CceEcCCCCEEEEE--ecccCC
Confidence            3567778888888999888776    88888888889998886     77788999999998  677776

>KOG0013 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.53  E-value=0.0023  Score=51.93  Aligned_cols=58  Identities=31%  Similarity=0.332  Sum_probs=54.1

Q ss_pred             eCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCC
Q 045158            7 ANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEG   64 (252)
Q Consensus         7 ~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~   64 (252)
                      .+++.+.+.+...+|+.++|.++..+.|+.+..|+++|+|..|-|...|..++|.++.
T Consensus       154 tT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~  211 (231)
T KOG0013|consen  154 TTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQ  211 (231)
T ss_pred             hhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCC
Confidence            3678899999999999999999999999999999999999999999999999999553

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=96.33  E-value=0.026  Score=39.21  Aligned_cols=63  Identities=24%  Similarity=0.348  Sum_probs=51.9

Q ss_pred             ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCc-eEEe--ecCeeecCC--ccccccCCCCCCEEEE
Q 045158          180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPRED-YIFI--HKQRIMRDN--CSLRWHGVEYGDILYV  242 (252)
Q Consensus       180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~-~~l~--~~g~~l~d~--~tL~~y~I~~gsti~l  242 (252)
                      ...|+++.-.-..++|+.+|..-|......+... +.|.  |..+.+.++  .||++.|+.+.++|++
T Consensus        13 lpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v   80 (82)
T PF00789_consen   13 LPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV   80 (82)
T ss_dssp             ETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred             CCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence            4678888888899999999999998887666654 7665  566777765  5999999999999987

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=96.30  E-value=0.037  Score=38.41  Aligned_cols=71  Identities=14%  Similarity=0.176  Sum_probs=56.0

Q ss_pred             cEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEE--ECceecccc--cccccccCCCCCCEEEEE
Q 045158           84 KIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF--FSGIELDDE--FRNLSEYGIREFSEIIVF  154 (252)
Q Consensus        84 ~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~--~~g~~L~~d--~~~L~~y~i~~~s~i~l~  154 (252)
                      ...|-|++ +|+.+.-.+..++|+.+|.+-|....+.+.....|.  |..+.+.++  +.+|.+.|+.+.+++.+.
T Consensus         4 ~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v~   79 (80)
T smart00166        4 QCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVLE   79 (80)
T ss_pred             eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEEe
Confidence            45788886 588899999999999999999977666666666765  566777533  579999999988888763

Present in FAF1 and Shp1p.

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=96.13  E-value=0.05  Score=37.76  Aligned_cols=68  Identities=18%  Similarity=0.212  Sum_probs=53.4

Q ss_pred             cEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCC-CccEEEE--ECceecccccccccccCCCCCCEE
Q 045158           84 KIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTP-IKRMLLF--FSGIELDDEFRNLSEYGIREFSEI  151 (252)
Q Consensus        84 ~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip-~~~q~L~--~~g~~L~~d~~~L~~y~i~~~s~i  151 (252)
                      ...|-|++ +|+.+...++.++||.+|.+-|....+-+ .....|.  |-.+.|.+++.||.+.|+.+.+.+
T Consensus         4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~   75 (79)
T cd01770           4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV   75 (79)
T ss_pred             eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence            35788896 68889999999999999999999876432 3455665  778888767889999999875443

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>COG5417 Uncharacterized small protein [Function unknown]

Probab=95.92  E-value=0.054  Score=36.63  Aligned_cols=65  Identities=15%  Similarity=0.195  Sum_probs=53.5

Q ss_pred             CEEEEE---eCCeEEEEEecCCCcHHHHHHHHHHHhCCC-----CCceEEEEcCeecCCCCCccccccccCCc
Q 045158            1 MRIIIV---ANGHEFVLEVGLQEPVLEIKRKIEQIFNIP-----ATSQTLAVSGWELVDGLDMEDYPIVKEGT   65 (252)
Q Consensus         1 M~v~v~---~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~-----~~~q~L~~~g~~L~d~~~L~~~~i~~~~t   65 (252)
                      |+|+|-   .+|.++.+.++...+|..|-..+++...++     -++.+..=.++.|.++..|.+|+|.+++.
T Consensus         5 ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~   77 (81)
T COG5417           5 IKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDI   77 (81)
T ss_pred             EEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCE
Confidence            456663   289999999999999999999998887653     25567788899999999999999996554

>PRK08364 sulfur carrier protein ThiS; Provisional

Probab=95.77  E-value=0.1  Score=35.27  Aligned_cols=56  Identities=20%  Similarity=0.214  Sum_probs=44.4

Q ss_pred             eEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158          185 SIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG  251 (252)
Q Consensus       185 ~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~  251 (252)
                      ...++++...||++|-+.+    +++.....+..+|+...     .++-+++||.|.++  +..+||
T Consensus        15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-----~~~~l~~gD~Veii--~~V~GG   70 (70)
T PRK08364         15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-----EDDPVKDGDYVEVI--PVVSGG   70 (70)
T ss_pred             ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CCcCcCCCCEEEEE--ccccCC
Confidence            5667778888999998877    77777788888998774     47779999999998  566665

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=95.66  E-value=0.099  Score=36.21  Aligned_cols=63  Identities=11%  Similarity=0.135  Sum_probs=50.7

Q ss_pred             ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEe--ecCeeecC---CccccccCCCCCCEEEE
Q 045158          180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFI--HKQRIMRD---NCSLRWHGVEYGDILYV  242 (252)
Q Consensus       180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~--~~g~~l~d---~~tL~~y~I~~gsti~l  242 (252)
                      ..+|+++.-.-..++|+++|.+.+....+.+...+.|.  |..+.+.+   +.||.+.|+-+.+++.+
T Consensus        11 lPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v   78 (80)
T smart00166       11 LPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL   78 (80)
T ss_pred             cCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence            46788888888999999999999977666666667665  55566764   47999999999999876

Present in FAF1 and Shp1p.

>PRK06488 sulfur carrier protein ThiS; Validated

Probab=95.57  E-value=0.086  Score=34.97  Aligned_cols=61  Identities=15%  Similarity=0.161  Sum_probs=45.3

Q ss_pred             cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158          181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG  251 (252)
Q Consensus       181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~  251 (252)
                      ++|+.+.+  + ..|+.+|.+.+    +++........+++... .....+.-+++||.|.++  +..+||
T Consensus         5 ~Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv--~~V~GG   65 (65)
T PRK06488          5 VNGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEIL--SPMQGG   65 (65)
T ss_pred             ECCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEE--EeccCC
Confidence            45877776  3 35899888776    66666667788886655 456677889999999998  666666

>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]

Probab=95.55  E-value=0.056  Score=43.98  Aligned_cols=61  Identities=23%  Similarity=0.314  Sum_probs=51.6

Q ss_pred             EEEeeCCCccHHHHHHHHHHHhCCCCccEEEE-ECc-----eecccccccccccCCCCCCEEEEEee
Q 045158           96 FNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF-FSG-----IELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        96 ~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~-~~g-----~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      .....+++.||++||.+++-..|.+++.+.|. |.|     ..|.+++..|.+|...+|-.||++-.
T Consensus        15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~   81 (234)
T KOG3206|consen   15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDS   81 (234)
T ss_pred             hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEec
Confidence            44556789999999999999999999999876 444     36766788999999999999999863

>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A

Probab=95.46  E-value=0.19  Score=41.74  Aligned_cols=116  Identities=14%  Similarity=0.118  Sum_probs=60.9

Q ss_pred             cEEEEeeCCCccHHHHHHHHHHHhCCCCc---cEEEE--ECce---ecccccccccccCCCCCCEEEEEeeeccccCCC-
Q 045158           94 RKFNIDVDRTDTVRSLKEKIHIIDGTPIK---RMLLF--FSGI---ELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDN-  164 (252)
Q Consensus        94 ~~~~l~v~~~~TV~~lK~~I~~~~gip~~---~q~L~--~~g~---~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~~-  164 (252)
                      +.+.+-|+.+.||.+|...++.+.+++.+   ..+|.  ++++   .+. .+.++...  .+...+.+..-|.....-. 
T Consensus        34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~-~d~~i~~l--~~~~~~r~E~ip~ee~~~~~  110 (213)
T PF14533_consen   34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILS-EDEPISSL--NDYITLRIEEIPEEELNLDD  110 (213)
T ss_dssp             -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE--TTSBGGGS----TTEEEEEE--GGGSS--T
T ss_pred             eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecC-CCCchhhc--cCcceeeeecCChHHhhccc
Confidence            45889999999999999999999998765   33333  4555   453 55667766  4444566654332111111 


Q ss_pred             CccccceeeEEeeeecc---CCceEEEEecCCCcHHHHHHHHhhcCCCCCC
Q 045158          165 PPIRRLSFKVQTSSSLL---NGASIPLEMQDSSTVNELRHLLLSSKILPRE  212 (252)
Q Consensus       165 ~~~~~~~i~v~~~~~~~---~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~  212 (252)
                      ......-|.|..+.+..   .|--+.+.|.+.++..++|+.|+++.|+|-.
T Consensus       111 ~~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~k  161 (213)
T PF14533_consen  111 ESEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDK  161 (213)
T ss_dssp             T--TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HH
T ss_pred             ccccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChh
Confidence            00012333443343322   3555668899999999999999999999963

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=95.24  E-value=0.21  Score=34.25  Aligned_cols=67  Identities=15%  Similarity=0.240  Sum_probs=50.2

Q ss_pred             EEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEE--ECceeccc--ccccccccCCCCCCEEEE
Q 045158           85 IHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF--FSGIELDD--EFRNLSEYGIREFSEIIV  153 (252)
Q Consensus        85 ~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~--~~g~~L~~--d~~~L~~y~i~~~s~i~l  153 (252)
                      ..|.|++ +|+.+.-.+..++||.+|.+-|.....- .....|.  |-.+.+.+  ++.+|.+.|+.+ +++.+
T Consensus         3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~-s~~~~   74 (77)
T cd01767           3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN-EVVFQ   74 (77)
T ss_pred             EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc-ceEEE
Confidence            4678886 6888889999999999999999876543 3445555  56677753  578999999995 44443

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]

Probab=95.20  E-value=0.035  Score=46.46  Aligned_cols=65  Identities=20%  Similarity=0.307  Sum_probs=49.5

Q ss_pred             CEEEEEe--CCeEEE-EEecCCCcHHHHHHHH-HHHhCCCCCceEEEE----cCeecCCCCCccccccccCCc
Q 045158            1 MRIIIVA--NGHEFV-LEVGLQEPVLEIKRKI-EQIFNIPATSQTLAV----SGWELVDGLDMEDYPIVKEGT   65 (252)
Q Consensus         1 M~v~v~~--~g~~~~-l~v~~~~tV~~lK~~I-~~~~~i~~~~q~L~~----~g~~L~d~~~L~~~~i~~~~t   65 (252)
                      |.|++..  .|...+ .+.+.+.|+.|++..+ ++...+.+..+|+.+    +|++|-|+.+|++|+..++.+
T Consensus         1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~   73 (297)
T KOG1639|consen    1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGAT   73 (297)
T ss_pred             CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCE
Confidence            7888955  334555 6788999999998655 555678886666554    599999999999999986644

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=94.96  E-value=0.24  Score=34.83  Aligned_cols=62  Identities=18%  Similarity=0.307  Sum_probs=49.1

Q ss_pred             ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecC--eeec--------CCccccccCCCCCCEEEE
Q 045158          180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQ--RIMR--------DNCSLRWHGVEYGDILYV  242 (252)
Q Consensus       180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g--~~l~--------d~~tL~~y~I~~gsti~l  242 (252)
                      ..+|.++.-.-..++|+++|..-|... +-.++.|.|+.+-  +++.        .+.||.+-|+.+..++++
T Consensus        11 lp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V   82 (85)
T cd01774          11 LPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFV   82 (85)
T ss_pred             CCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEE
Confidence            467888888888899999999999654 4455778777544  7775        367999999999998876

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>KOG0013 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.90  E-value=0.049  Score=44.40  Aligned_cols=61  Identities=23%  Similarity=0.309  Sum_probs=55.5

Q ss_pred             CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEE
Q 045158           92 PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIV  153 (252)
Q Consensus        92 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l  153 (252)
                      +++.+.+.+...+||.++|.+++...|+.+.-|+++|+|..|- |...|..++|..|+.-.+
T Consensus       155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~-dkt~LeEc~iekg~rYvl  215 (231)
T KOG0013|consen  155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLV-DKTDLEECKIEKGQRYVL  215 (231)
T ss_pred             hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCcee-ccccceeeeecCCCEEEE
Confidence            4677999999999999999999999999999999999999996 999999999999965444

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=94.86  E-value=0.14  Score=35.50  Aligned_cols=44  Identities=16%  Similarity=0.138  Sum_probs=38.3

Q ss_pred             EEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCee
Q 045158            4 IIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWE   48 (252)
Q Consensus         4 ~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~   48 (252)
                      .|.+.+ ++.+.+.++.+..+|..+|.++.++|++...|.|....
T Consensus         6 KV~f~~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~   49 (80)
T cd06406           6 KVHFKY-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA   49 (80)
T ss_pred             EEEEEE-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence            344555 99999999999999999999999999999999997653

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=94.76  E-value=0.29  Score=33.88  Aligned_cols=68  Identities=15%  Similarity=0.255  Sum_probs=52.8

Q ss_pred             EEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEE--ECceeccc--ccccccccCCCCCCEEEE
Q 045158           85 IHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF--FSGIELDD--EFRNLSEYGIREFSEIIV  153 (252)
Q Consensus        85 ~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~--~~g~~L~~--d~~~L~~y~i~~~s~i~l  153 (252)
                      ..|.|++ +|+.+.-.+..++|+++|.+-|....+-+ ....|+  |-.+.+.+  .+.+|.+.|+.+.++|.|
T Consensus         5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v   77 (79)
T cd01772           5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV   77 (79)
T ss_pred             EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence            4678885 68888889999999999999999766543 444555  67777742  257999999999988876

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=94.73  E-value=0.34  Score=33.47  Aligned_cols=62  Identities=13%  Similarity=0.262  Sum_probs=48.3

Q ss_pred             ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEe--ecCeeecC---CccccccCCCCCCEEEE
Q 045158          180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFI--HKQRIMRD---NCSLRWHGVEYGDILYV  242 (252)
Q Consensus       180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~--~~g~~l~d---~~tL~~y~I~~gsti~l  242 (252)
                      ..+|.++.-.-..++|+++|++-+....+-+ ..+.|+  |..+.+.+   +.||.+.|+.+..+|++
T Consensus        11 lp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v   77 (79)
T cd01772          11 LLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV   77 (79)
T ss_pred             CCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence            4578888888888999999999998665433 446555  55677753   47999999999999987

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=94.64  E-value=0.27  Score=34.06  Aligned_cols=63  Identities=21%  Similarity=0.197  Sum_probs=48.4

Q ss_pred             EEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCC-CCceEEE--EcCeecCCC-CCccccccccCCc
Q 045158            2 RIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIP-ATSQTLA--VSGWELVDG-LDMEDYPIVKEGT   65 (252)
Q Consensus         2 ~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~-~~~q~L~--~~g~~L~d~-~~L~~~~i~~~~t   65 (252)
                      +|.|++ +|+.+....+.++||++|.+.|....+-+ .....|.  |=.+.|.|+ .||++.|+. +++
T Consensus         6 ~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~-~s~   73 (79)
T cd01770           6 SIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLL-NAV   73 (79)
T ss_pred             EEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCc-CcE
Confidence            466766 89999999999999999999999876432 2445665  557777764 599999998 454

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PRK07440 hypothetical protein; Provisional

Probab=94.48  E-value=0.28  Score=33.16  Aligned_cols=61  Identities=20%  Similarity=0.208  Sum_probs=46.2

Q ss_pred             CCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158          182 NGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG  251 (252)
Q Consensus       182 ~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~  251 (252)
                      +|+.+.  +....|+.+|-+.+    ++++....+..+|.... .....++-+++||.|.++  +..+||
T Consensus        10 NG~~~~--~~~~~tl~~lL~~l----~~~~~~vav~~N~~iv~-r~~w~~~~L~~gD~IEIv--~~v~GG   70 (70)
T PRK07440         10 NGETRT--CSSGTSLPDLLQQL----GFNPRLVAVEYNGEILH-RQFWEQTQVQPGDRLEIV--TIVGGG   70 (70)
T ss_pred             CCEEEE--cCCCCCHHHHHHHc----CCCCCeEEEEECCEEeC-HHHcCceecCCCCEEEEE--EEecCC
Confidence            477654  45567888776644    78888889999996654 455667789999999999  788877

>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length

Probab=94.47  E-value=1.1  Score=38.04  Aligned_cols=136  Identities=18%  Similarity=0.242  Sum_probs=82.6

Q ss_pred             cCCcEEEEEE-e-C-CcEE----EEeeCCCccHHHHHHHHHHHhCCCCccEEEEECc------eecccccccccccCCCC
Q 045158           81 QHDKIHIIIK-F-P-SRKF----NIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSG------IELDDEFRNLSEYGIRE  147 (252)
Q Consensus        81 ~~~~~~i~v~-~-~-g~~~----~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g------~~L~~d~~~L~~y~i~~  147 (252)
                      ....+-||+| + + .+++    .+-|+.+++|.++-..|.++.|+|++...++|.-      ..+ +...++....+.+
T Consensus        65 ~~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i-~~~~t~~~~el~~  143 (249)
T PF12436_consen   65 PSDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPI-DPNQTFEKAELQD  143 (249)
T ss_dssp             TTTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE---SSSBHHHTT--T
T ss_pred             CCCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEc-CCCCchhhcccCC
Confidence            3456788888 4 2 3332    3668899999999999999999999988877743      256 5889999999999


Q ss_pred             CCEEEEEeeecc--ccCCCCcc---------ccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEE
Q 045158          148 FSEIIVFLKTMN--RLRDNPPI---------RRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIF  216 (252)
Q Consensus       148 ~s~i~l~~~~~~--~~~~~~~~---------~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l  216 (252)
                      |+.|-.-..+..  ......+.         ..+.|.++.. ....+..+.+++....|-.+|-++|.+..|+.++..+|
T Consensus       144 GdIi~fQ~~~~~~~~~~~~~~~v~~Yy~~l~nrv~V~f~~~-~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~  222 (249)
T PF12436_consen  144 GDIICFQRAPSEDLDKSSRYPDVKEYYDFLYNRVEVEFKPK-DNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRF  222 (249)
T ss_dssp             TEEEEEEE--GG--GGGSSS-SHHHHHHHHHHEEEEEEEET-TSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEE
T ss_pred             CCEEEEEeccccccccccCCCCHHHHHHHHhCeEEEEEEEC-CCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEE
Confidence            998877653210  00001111         1133333321 12334588999999999999999999999999998877


Q ss_pred             ee
Q 045158          217 IH  218 (252)
Q Consensus       217 ~~  218 (252)
                      .-
T Consensus       223 ~~  224 (249)
T PF12436_consen  223 FT  224 (249)
T ss_dssp             E-
T ss_pred             EE
Confidence            53

It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.

>PRK06083 sulfur carrier protein ThiS; Provisional

Probab=94.45  E-value=0.32  Score=34.15  Aligned_cols=61  Identities=23%  Similarity=0.365  Sum_probs=47.6

Q ss_pred             CCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158          182 NGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG  251 (252)
Q Consensus       182 ~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~  251 (252)
                      +|+...+  ....||.+|-+.+    ++|.....+..+|..+ .....+.+-+++||.|.++  +..+||
T Consensus        24 NG~~~~~--~~~~tl~~LL~~l----~~~~~~vAVevNg~iV-pr~~w~~t~L~egD~IEIv--~~VgGG   84 (84)
T PRK06083         24 NDQSIQV--DISSSLAQIIAQL----SLPELGCVFAINNQVV-PRSEWQSTVLSSGDAISLF--QAIAGG   84 (84)
T ss_pred             CCeEEEc--CCCCcHHHHHHHc----CCCCceEEEEECCEEe-CHHHcCcccCCCCCEEEEE--EEecCC
Confidence            5776655  4556788776654    7888888999999776 5567788889999999998  777777

>PRK05659 sulfur carrier protein ThiS; Validated

Probab=94.42  E-value=0.3  Score=32.32  Aligned_cols=62  Identities=21%  Similarity=0.229  Sum_probs=45.3

Q ss_pred             cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158          181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG  251 (252)
Q Consensus       181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~  251 (252)
                      ++|+.+  ++....|+.+|-+.+    +++.....+..+|....- ....++-+++||.|.++  +..+||
T Consensus         5 vNG~~~--~~~~~~tl~~lL~~l----~~~~~~vav~vNg~iv~r-~~~~~~~l~~gD~vei~--~~vgGG   66 (66)
T PRK05659          5 LNGEPR--ELPDGESVAALLARE----GLAGRRVAVEVNGEIVPR-SQHASTALREGDVVEIV--HALGGG   66 (66)
T ss_pred             ECCeEE--EcCCCCCHHHHHHhc----CCCCCeEEEEECCeEeCH-HHcCcccCCCCCEEEEE--EEecCC
Confidence            357755  445567888777654    888888888888866553 34566678999999999  777777

>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats)

Probab=94.40  E-value=0.17  Score=35.24  Aligned_cols=59  Identities=12%  Similarity=0.217  Sum_probs=43.4

Q ss_pred             EEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           96 FNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        96 ~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      +...++-..++..||..++.+.+++.+...+...+..|+ ++++|-+-+++-..++.+.+
T Consensus         5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~-~~k~L~dQcVqgeGlVQlnv   63 (88)
T PF11620_consen    5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLE-PHKSLVDQCVQGEGLVQLNV   63 (88)
T ss_dssp             EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE---TTSBTTTSS----SEEEEEE
T ss_pred             EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceec-CCccHHHhhccccCEEEEEE
Confidence            445667788999999999999999999999999998895 99999999999999888876

This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=94.37  E-value=0.26  Score=34.44  Aligned_cols=47  Identities=13%  Similarity=0.131  Sum_probs=39.9

Q ss_pred             CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCC-CceEEEEcCe
Q 045158            1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPA-TSQTLAVSGW   47 (252)
Q Consensus         1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~-~~q~L~~~g~   47 (252)
                      |+|.+.++|..+.+.+.++.+..+|+.+|++++++.. ....|.|...
T Consensus         1 ~~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Dd   48 (82)
T cd06407           1 VRVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDD   48 (82)
T ss_pred             CEEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECC
Confidence            6777788999999999999999999999999999875 5566767543

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein

Probab=94.37  E-value=0.25  Score=32.72  Aligned_cols=61  Identities=21%  Similarity=0.251  Sum_probs=44.4

Q ss_pred             CCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158          182 NGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG  251 (252)
Q Consensus       182 ~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~  251 (252)
                      +|+.+.+  +...||.+|.+.+    +++.+...+..+|+.... ....++-+++||+|.++  +..+||
T Consensus         5 Ng~~~~~--~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~-~~~~~~~L~~gD~V~ii--~~v~GG   65 (65)
T cd00565           5 NGEPREV--EEGATLAELLEEL----GLDPRGVAVALNGEIVPR-SEWASTPLQDGDRIEIV--TAVGGG   65 (65)
T ss_pred             CCeEEEc--CCCCCHHHHHHHc----CCCCCcEEEEECCEEcCH-HHcCceecCCCCEEEEE--EeccCC
Confidence            4655544  4567899888877    577788888889866543 44555679999999998  566665

ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.

>PRK07696 sulfur carrier protein ThiS; Provisional

Probab=94.16  E-value=0.35  Score=32.34  Aligned_cols=62  Identities=27%  Similarity=0.317  Sum_probs=45.5

Q ss_pred             cCCceEEEEecCC-CcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158          181 LNGASIPLEMQDS-STVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG  251 (252)
Q Consensus       181 ~~g~~~~l~v~~~-~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~  251 (252)
                      ++|+.+.+  ... .||.+|-+.+    ++++.......++..+. ......+-+++||.|.++  +..+||
T Consensus         5 vNG~~~~~--~~~~~tv~~lL~~l----~~~~~~vav~vN~~iv~-r~~w~~~~L~~gD~iEIv--~~VgGG   67 (67)
T PRK07696          5 INGNQIEV--PESVKTVAELLTHL----ELDNKIVVVERNKDILQ-KDDHTDTSVFDGDQIEIV--TFVGGG   67 (67)
T ss_pred             ECCEEEEc--CCCcccHHHHHHHc----CCCCCeEEEEECCEEeC-HHHcCceecCCCCEEEEE--EEecCC
Confidence            35776644  333 5787776544    78888888889996654 355677789999999999  788877

>PF15044 CLU_N: Mitochondrial function, CLU-N-term

Probab=94.10  E-value=0.1  Score=35.94  Aligned_cols=56  Identities=18%  Similarity=0.235  Sum_probs=46.9

Q ss_pred             ecCCCcHHHHHHHHhhcCCC-CCCceEEeecCeeecCCccccccC-CCCCCEEEEecC
Q 045158          190 MQDSSTVNELRHLLLSSKIL-PREDYIFIHKQRIMRDNCSLRWHG-VEYGDILYVFKG  245 (252)
Q Consensus       190 v~~~~tV~~Lk~~i~~~~gi-p~~~~~l~~~g~~l~d~~tL~~y~-I~~gsti~l~~~  245 (252)
                      |.++++|.++|+-+.+.... ....+.|.++|..|+|...|.+.. +++|+++.|+..
T Consensus         1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~   58 (76)
T PF15044_consen    1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE   58 (76)
T ss_pred             CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence            56789999999999887554 446789999999999998888874 899999999854

>PRK08053 sulfur carrier protein ThiS; Provisional

Probab=94.09  E-value=0.46  Score=31.56  Aligned_cols=62  Identities=26%  Similarity=0.302  Sum_probs=44.4

Q ss_pred             cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158          181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG  251 (252)
Q Consensus       181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~  251 (252)
                      .+|+.+.+  ....|+.+|.+.+    +++.....+..+++... ......+-+++||.|.++  +..+||
T Consensus         5 vNg~~~~~--~~~~tl~~ll~~l----~~~~~~vaVavN~~iv~-r~~w~~~~L~~gD~Ieii--~~v~GG   66 (66)
T PRK08053          5 FNDQPMQC--AAGQTVHELLEQL----NQLQPGAALAINQQIIP-REQWAQHIVQDGDQILLF--QVIAGG   66 (66)
T ss_pred             ECCeEEEc--CCCCCHHHHHHHc----CCCCCcEEEEECCEEeC-hHHcCccccCCCCEEEEE--EEccCC
Confidence            35777665  4456898888765    55556678888887663 344566679999999998  666766

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=94.09  E-value=0.51  Score=32.27  Aligned_cols=61  Identities=15%  Similarity=0.386  Sum_probs=45.1

Q ss_pred             ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEe--ecCeeecC---CccccccCCCCCCEEEE
Q 045158          180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFI--HKQRIMRD---NCSLRWHGVEYGDILYV  242 (252)
Q Consensus       180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~--~~g~~l~d---~~tL~~y~I~~gsti~l  242 (252)
                      ..+|+++.-.-..++|+.+|.+-|.....- ...+.|.  |..+.+.+   +.||.+.|+.+ +++.+
T Consensus         9 lpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~-s~~~~   74 (77)
T cd01767           9 LPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN-EVVFQ   74 (77)
T ss_pred             cCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc-ceEEE
Confidence            457888888888999999999999876433 4456565  45566654   78999999994 55544

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=94.07  E-value=0.36  Score=38.09  Aligned_cols=65  Identities=15%  Similarity=0.226  Sum_probs=46.0

Q ss_pred             ccCC----ceEEEEecCCCcHHHHHHHHhhcCCCCCCc-eEEeec-Ceee--cCCccccccCCCCCC----EEEEec
Q 045158          180 LLNG----ASIPLEMQDSSTVNELRHLLLSSKILPRED-YIFIHK-QRIM--RDNCSLRWHGVEYGD----ILYVFK  244 (252)
Q Consensus       180 ~~~g----~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~-~~l~~~-g~~l--~d~~tL~~y~I~~gs----ti~l~~  244 (252)
                      ++.|    .++.+.++++.||.+|+..|.+..++|... +.|++. +..+  .++..+..+.-.+.+    ++.+..
T Consensus         7 s~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~l~~   83 (162)
T PF13019_consen    7 SFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLRLSL   83 (162)
T ss_pred             cCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEEEEE
Confidence            4556    588889999999999999999999999887 455553 3344  455566666555444    555543

>TIGR01683 thiS thiamine biosynthesis protein ThiS

Probab=94.05  E-value=0.3  Score=32.23  Aligned_cols=62  Identities=21%  Similarity=0.238  Sum_probs=44.8

Q ss_pred             cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158          181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG  251 (252)
Q Consensus       181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~  251 (252)
                      ++|+.+.+  ....|+.+|.+.+    +++++...+..+|+... .....++-+++||.|.++  +..+||
T Consensus         3 iNg~~~~~--~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~-~~~~~~~~L~~gD~veii--~~V~GG   64 (64)
T TIGR01683         3 VNGEPVEV--EDGLTLAALLESL----GLDPRRVAVAVNGEIVP-RSEWDDTILKEGDRIEIV--TFVGGG   64 (64)
T ss_pred             ECCeEEEc--CCCCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCceecCCCCEEEEE--EeccCC
Confidence            35666655  4456899888876    67777778888886653 334556789999999998  666666

This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.

>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats)

Probab=93.99  E-value=0.12  Score=35.93  Aligned_cols=57  Identities=19%  Similarity=0.158  Sum_probs=40.7

Q ss_pred             EEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEE
Q 045158          186 IPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYV  242 (252)
Q Consensus       186 ~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l  242 (252)
                      +...++-...+..||..++.+.++..+.+-|......|+++++|-+.+|+-.-++.+
T Consensus         5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQl   61 (88)
T PF11620_consen    5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQL   61 (88)
T ss_dssp             EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEE
T ss_pred             EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEE
Confidence            345567778999999999999999999999999888899999999999987777765

This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.

>PRK05863 sulfur carrier protein ThiS; Provisional

Probab=93.91  E-value=0.31  Score=32.34  Aligned_cols=61  Identities=20%  Similarity=0.285  Sum_probs=43.7

Q ss_pred             cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158          181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG  251 (252)
Q Consensus       181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~  251 (252)
                      ++|+.+.+.  ...|+.+|-+.+    ++|.....+.+++..... ...+.+ +++||.|.++  +..+||
T Consensus         5 vNG~~~~~~--~~~tl~~ll~~l----~~~~~~vav~~N~~iv~r-~~~~~~-L~~gD~ieIv--~~VgGG   65 (65)
T PRK05863          5 VNEEQVEVD--EQTTVAALLDSL----GFPEKGIAVAVDWSVLPR-SDWATK-LRDGARLEVV--TAVQGG   65 (65)
T ss_pred             ECCEEEEcC--CCCcHHHHHHHc----CCCCCcEEEEECCcCcCh-hHhhhh-cCCCCEEEEE--eeccCC
Confidence            457766553  456777776654    889989999999865543 233345 9999999998  777776

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=93.83  E-value=0.83  Score=31.90  Aligned_cols=71  Identities=20%  Similarity=0.331  Sum_probs=57.2

Q ss_pred             cEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEE--ECceecc--cccccccccCCCCCCEEEEEe
Q 045158           84 KIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF--FSGIELD--DEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        84 ~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~--~~g~~L~--~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      .-+|.|++ +|+...-.+..++|+.+|-.-+.. .|.++....|+  |--+.+.  +.+.||.+.|+.+.+++.+--
T Consensus         5 ~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~   80 (82)
T cd01773           5 KARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE   80 (82)
T ss_pred             eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence            35788996 688899999999999999999998 57788888887  5555552  235799999999999988754

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]

Probab=93.82  E-value=0.13  Score=36.08  Aligned_cols=68  Identities=10%  Similarity=0.107  Sum_probs=60.5

Q ss_pred             CCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecC
Q 045158          182 NGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSR  249 (252)
Q Consensus       182 ~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~  249 (252)
                      .|.++-+.|..+.+...|.+.-+.+.|=..+..+|.|+|...+-++|=.+.+..++|.|..+..-+.|
T Consensus        33 d~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG  100 (103)
T COG5227          33 DGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGG  100 (103)
T ss_pred             CCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcC
Confidence            46777789999999999999999999999999999999999999999999999999999876555544

>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A

Probab=93.77  E-value=0.71  Score=32.63  Aligned_cols=61  Identities=10%  Similarity=0.142  Sum_probs=44.6

Q ss_pred             cEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEE----Cce-ecccccccccccCCCCCCEEEEEe
Q 045158           94 RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFF----SGI-ELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        94 ~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~----~g~-~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      ..++..++..+||..+...+.+.+.| ...-||.-    ++. .|.+.+.|+.+.+|.+|.+|.+..
T Consensus        14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~   79 (88)
T PF14836_consen   14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEE   79 (88)
T ss_dssp             EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE
T ss_pred             cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEe
Confidence            35677899999999999999999999 56678763    333 464566799999999999999987

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=93.68  E-value=0.71  Score=32.24  Aligned_cols=62  Identities=16%  Similarity=0.278  Sum_probs=50.9

Q ss_pred             ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEe--ecCeeec---CCccccccCCCCCCEEEE
Q 045158          180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFI--HKQRIMR---DNCSLRWHGVEYGDILYV  242 (252)
Q Consensus       180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~--~~g~~l~---d~~tL~~y~I~~gsti~l  242 (252)
                      ..+|.++.-.-..++++++|..-+.. .|.+.+.+.|+  |--+++.   -+.||.+-|+.+..++++
T Consensus        12 lP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfV   78 (82)
T cd01773          12 YPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFV   78 (82)
T ss_pred             CCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEE
Confidence            46799998888889999999999988 57788888776  4445553   347999999999999987

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=93.64  E-value=0.85  Score=31.65  Aligned_cols=71  Identities=14%  Similarity=0.117  Sum_probs=56.7

Q ss_pred             cEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEE--ECceecc--cccccccccCCCCCCEEEEEe
Q 045158           84 KIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF--FSGIELD--DEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        84 ~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~--~~g~~L~--~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      ..+|.+++ +|+.+.-.+..++|+.+|-.-|... |.++...+|+  |--+.+.  +.+.+|.+.|+.+..+|.+..
T Consensus         4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Vee   79 (80)
T cd01771           4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILEE   79 (80)
T ss_pred             eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEEc
Confidence            45788886 6888888999999999999999874 7777778887  5666663  345799999999999888753

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=93.62  E-value=0.96  Score=31.79  Aligned_cols=70  Identities=13%  Similarity=0.167  Sum_probs=53.6

Q ss_pred             cEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEE--Cceecc-------cccccccccCCCCCCEEEE
Q 045158           84 KIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFF--SGIELD-------DEFRNLSEYGIREFSEIIV  153 (252)
Q Consensus        84 ~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~--~g~~L~-------~d~~~L~~y~i~~~s~i~l  153 (252)
                      ..+|.+++ +|+.+.-.+..++||++|..-|..+ +-.+....|+.  --+.+.       +.+.||.+-|+.+.+++.+
T Consensus         4 ~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V   82 (85)
T cd01774           4 TVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFV   82 (85)
T ss_pred             eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEE
Confidence            46788886 6888888999999999999999754 44556777774  336663       2467999999998888776


Q ss_pred             E
Q 045158          154 F  154 (252)
Q Consensus       154 ~  154 (252)
                      .
T Consensus        83 ~   83 (85)
T cd01774          83 Q   83 (85)
T ss_pred             e
Confidence            3

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]

Probab=93.60  E-value=0.13  Score=43.05  Aligned_cols=56  Identities=20%  Similarity=0.218  Sum_probs=43.3

Q ss_pred             EEecCCCcHHHHHHHHhhc-CCCCC----CceEEeecCeeecCCccccccCCCCCCEEEEe
Q 045158          188 LEMQDSSTVNELRHLLLSS-KILPR----EDYIFIHKQRIMRDNCSLRWHGVEYGDILYVF  243 (252)
Q Consensus       188 l~v~~~~tV~~Lk~~i~~~-~gip~----~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~  243 (252)
                      .....+.|+.|+++.+..+ ..+-+    ...++.-+|+.+-|+.+|++|+..+|+||++=
T Consensus        17 ~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vK   77 (297)
T KOG1639|consen   17 KDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVK   77 (297)
T ss_pred             ecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEe
Confidence            3455678999999777554 45444    23566678999999999999999999999873

>cd00754 MoaD Ubiquitin domain of MoaD-like proteins

Probab=93.58  E-value=0.42  Score=32.69  Aligned_cols=55  Identities=18%  Similarity=0.085  Sum_probs=41.1

Q ss_pred             eEEEEecCCCcHHHHHHHHhhcCCC----CCCceEEeecCeeecCCccccccCCCCCCEEEEec
Q 045158          185 SIPLEMQDSSTVNELRHLLLSSKIL----PREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFK  244 (252)
Q Consensus       185 ~~~l~v~~~~tV~~Lk~~i~~~~gi----p~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~  244 (252)
                      ...++++...||.+|.+.+.+.++-    ......+..+|+...     .++-+++||+|.+++
T Consensus        17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~p   75 (80)
T cd00754          17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIP   75 (80)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeC
Confidence            4566777778999999999887532    334556667887665     567799999999973

MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=93.49  E-value=0.36  Score=33.47  Aligned_cols=44  Identities=20%  Similarity=0.248  Sum_probs=38.1

Q ss_pred             EEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECce
Q 045158           87 IIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGI  131 (252)
Q Consensus        87 i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~  131 (252)
                      |.|++.+ ++.+.+.+..+..+|..+|.++.++|++...|.|...
T Consensus         5 vKV~f~~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde   48 (80)
T cd06406           5 VKVHFKY-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE   48 (80)
T ss_pred             EEEEEEE-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence            4455555 8999999999999999999999999999999999654

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=93.46  E-value=0.78  Score=31.84  Aligned_cols=62  Identities=15%  Similarity=0.178  Sum_probs=50.3

Q ss_pred             ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEe--ecCeeec---CCccccccCCCCCCEEEE
Q 045158          180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFI--HKQRIMR---DNCSLRWHGVEYGDILYV  242 (252)
Q Consensus       180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~--~~g~~l~---d~~tL~~y~I~~gsti~l  242 (252)
                      ..+|.++.-.-..++++++|..-+... |.+.+.|.|.  |--+++.   .+.||.+-|+.+..+|++
T Consensus        11 lP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V   77 (80)
T cd01771          11 TPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLIL   77 (80)
T ss_pred             CCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence            467888888888999999999999865 7777788776  4556663   357999999999999987

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF15044 CLU_N: Mitochondrial function, CLU-N-term

Probab=93.24  E-value=0.2  Score=34.46  Aligned_cols=57  Identities=25%  Similarity=0.307  Sum_probs=45.9

Q ss_pred             eCCCccHHHHHHHHHHHhC-CCCccEEEEECceecccccccccccC-CCCCCEEEEEeee
Q 045158          100 VDRTDTVRSLKEKIHIIDG-TPIKRMLLFFSGIELDDEFRNLSEYG-IREFSEIIVFLKT  157 (252)
Q Consensus       100 v~~~~TV~~lK~~I~~~~g-ip~~~q~L~~~g~~L~~d~~~L~~y~-i~~~s~i~l~~~~  157 (252)
                      |+++++|.++++-+..... -......|.++|..| +|...|+++. +++|+++.+..+|
T Consensus         1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L-~~~~el~~i~~~~~~~~L~lve~p   59 (76)
T PF15044_consen    1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRL-DDFVELSEIEGIKDGCVLELVEEP   59 (76)
T ss_pred             CChhhHHHHHHHHHHhCccccceeEEEEEECCCcc-CCchhhhhhhCCCCCcEEEEEecC
Confidence            5788999999999998765 345567788999999 4888888874 7889988887753

>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length

Probab=92.87  E-value=0.9  Score=38.66  Aligned_cols=114  Identities=16%  Similarity=0.142  Sum_probs=71.4

Q ss_pred             EEecCCCcHHHHHHHHHHHhCCCCCceEEEEcC------eecCCCCCccccccccCCcEEEEEecCCC--CccC------
Q 045158           14 LEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSG------WELVDGLDMEDYPIVKEGTKIDLTINPFL--QSSF------   79 (252)
Q Consensus        14 l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g------~~L~d~~~L~~~~i~~~~t~i~l~~~~~~--~~~~------   79 (252)
                      +-|+.+++|.++-..|.+..|.|++..-++|.-      ..++.+.++....+.+++. |......+.  ....      
T Consensus        89 ~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdI-i~fQ~~~~~~~~~~~~~~~v~  167 (249)
T PF12436_consen   89 VYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDI-ICFQRAPSEDLDKSSRYPDVK  167 (249)
T ss_dssp             EEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEE-EEEEE--GG--GGGSSS-SHH
T ss_pred             EEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCE-EEEEeccccccccccCCCCHH
Confidence            568999999999999999999999988888763      4677888999999995554 433332221  0000      


Q ss_pred             ----CcCCcEEEEEE-e--C-CcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEE
Q 045158           80 ----NQHDKIHIIIK-F--P-SRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFF  128 (252)
Q Consensus        80 ----~~~~~~~i~v~-~--~-g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~  128 (252)
                          -....+.|.++ .  + +..+.+.++...|-.+|-++|+++.|++|...+|+-
T Consensus       168 ~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~  224 (249)
T PF12436_consen  168 EYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFT  224 (249)
T ss_dssp             HHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE-
T ss_pred             HHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence                01224555555 2  2 347999999999999999999999999999888763

It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.

>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]

Probab=92.22  E-value=0.97  Score=30.35  Aligned_cols=61  Identities=26%  Similarity=0.295  Sum_probs=46.9

Q ss_pred             CCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158          182 NGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG  251 (252)
Q Consensus       182 ~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~  251 (252)
                      +|+.+  +++...|+++|-+++    |++.+......+|.... ...-+++-+++||.|.++  ++-+||
T Consensus         8 ng~~~--e~~~~~tv~dLL~~l----~~~~~~vav~vNg~iVp-r~~~~~~~l~~gD~ievv--~~v~GG   68 (68)
T COG2104           8 NGKEV--EIAEGTTVADLLAQL----GLNPEGVAVAVNGEIVP-RSQWADTILKEGDRIEVV--RVVGGG   68 (68)
T ss_pred             CCEEE--EcCCCCcHHHHHHHh----CCCCceEEEEECCEEcc-chhhhhccccCCCEEEEE--EeecCC
Confidence            35544  455557999988776    89999999999996654 345677888999999998  777776

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=91.55  E-value=1.5  Score=30.63  Aligned_cols=44  Identities=11%  Similarity=0.028  Sum_probs=35.7

Q ss_pred             EEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCC-ccEEEEECc
Q 045158           87 IIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPI-KRMLLFFSG  130 (252)
Q Consensus        87 i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~-~~q~L~~~g  130 (252)
                      |-+.+.|..+.+.+.++.+..+|++.|.+++++.. ....|.|..
T Consensus         3 vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~D   47 (82)
T cd06407           3 VKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLD   47 (82)
T ss_pred             EEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEEC
Confidence            44446788899999999999999999999999865 566677733

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>smart00666 PB1 PB1 domain

Probab=91.52  E-value=1.2  Score=30.46  Aligned_cols=45  Identities=18%  Similarity=0.214  Sum_probs=38.4

Q ss_pred             EEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcC
Q 045158            2 RIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSG   46 (252)
Q Consensus         2 ~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g   46 (252)
                      +|.+.+++....+.++++.|..+|+.+|+++++.+.....|-|..
T Consensus         3 ~vK~~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D   47 (81)
T smart00666        3 DVKLRYGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD   47 (81)
T ss_pred             cEEEEECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence            345566889999999999999999999999999987777787764

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer

Probab=91.34  E-value=1.1  Score=30.25  Aligned_cols=60  Identities=22%  Similarity=0.212  Sum_probs=47.0

Q ss_pred             CCceEEEEecCCCcHHHHHHHHhhcCC-C-CCCceEEeecCeeecCCccccccCCCCCCEEEEec
Q 045158          182 NGASIPLEMQDSSTVNELRHLLLSSKI-L-PREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFK  244 (252)
Q Consensus       182 ~g~~~~l~v~~~~tV~~Lk~~i~~~~g-i-p~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~  244 (252)
                      .| ...+.+....||.+|.+.+..+.. + ......+..+|+...+  .-.++-+++||+|.+++
T Consensus        11 ~g-~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~p   72 (77)
T PF02597_consen   11 AG-EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILP   72 (77)
T ss_dssp             HT-EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEE
T ss_pred             hC-CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEEC
Confidence            35 666778888999999999987752 1 3356788889988887  47778889999999973

ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=91.30  E-value=1.4  Score=30.97  Aligned_cols=54  Identities=17%  Similarity=0.246  Sum_probs=41.6

Q ss_pred             CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccc
Q 045158            1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMED   57 (252)
Q Consensus         1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~   57 (252)
                      |+|.+.+.|....+.++++-+..+|..+|.+++++. ....+-|...  .|-.++++
T Consensus         3 ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE--GD~iti~s   56 (86)
T cd06408           3 IRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD--GDMITMGD   56 (86)
T ss_pred             EEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC--CCCccccC
Confidence            455566789999999999999999999999999995 4455666655  45445543

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]

Probab=91.08  E-value=0.63  Score=38.01  Aligned_cols=60  Identities=15%  Similarity=0.121  Sum_probs=48.3

Q ss_pred             EEEecCCCcHHHHHHHHhhcCCCCCCceEEe-ecC-----eeec-CCccccccCCCCCCEEEEecCe
Q 045158          187 PLEMQDSSTVNELRHLLLSSKILPREDYIFI-HKQ-----RIMR-DNCSLRWHGVEYGDILYVFKGT  246 (252)
Q Consensus       187 ~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~-~~g-----~~l~-d~~tL~~y~I~~gsti~l~~~~  246 (252)
                      ......+.|++++|.+++-..|.+++.+.+. |+|     -.|. ++..|.+|...+|-.|+++...
T Consensus        16 Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~   82 (234)
T KOG3206|consen   16 EKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSN   82 (234)
T ss_pred             hhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecC
Confidence            3445678899999999999999999987654 333     2454 5689999999999999998654

>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=90.82  E-value=0.6  Score=44.86  Aligned_cols=210  Identities=15%  Similarity=0.172  Sum_probs=111.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHhCCCCCceEEE--Ec--Ceec--CCCCCccccccccCCcEEEEEecCCCCccCCc-CC
Q 045158           11 EFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLA--VS--GWEL--VDGLDMEDYPIVKEGTKIDLTINPFLQSSFNQ-HD   83 (252)
Q Consensus        11 ~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~--~~--g~~L--~d~~~L~~~~i~~~~t~i~l~~~~~~~~~~~~-~~   83 (252)
                      .+.+.|+.-++++.+|+.|+...+++.+..+++  ++  |..+  .++.+|+..- . +.+ |.+-+-.+    +.. ..
T Consensus       878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~~-~-~~~-iTI~LG~~----Lk~dE~  950 (1203)
T KOG4598|consen  878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGAF-Q-SCF-ITIKLGAP----LKSDEK  950 (1203)
T ss_pred             heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhhc-c-cce-EEEEecCc----CCCCce
Confidence            577899999999999999999999999998887  32  3223  3445666552 2 222 44433222    111 11


Q ss_pred             cEEEEEE--eCCc-----E-EEEeeCCCccHHHHHHHHHHHh------C--CCCccEEEEECc-----eecccccccccc
Q 045158           84 KIHIIIK--FPSR-----K-FNIDVDRTDTVRSLKEKIHIID------G--TPIKRMLLFFSG-----IELDDEFRNLSE  142 (252)
Q Consensus        84 ~~~i~v~--~~g~-----~-~~l~v~~~~TV~~lK~~I~~~~------g--ip~~~q~L~~~g-----~~L~~d~~~L~~  142 (252)
                      ++.|+.-  +.++     . +..-+..+.||++.|..+-.+.      +  +.+.+.++.-++     +.+.|++.++.|
T Consensus       951 ~~KI~~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L~~i~~~~ltLS~~r~R~~~K~g~~Pg~~~lD~~~~~eD 1030 (1203)
T KOG4598|consen  951 MMKIILLDILENERENWKPLFELVVSQSTTIGQVKLELLRMLKEVYGEELTLSMVRLRELGKSGVGPGRAVLDPNDTLED 1030 (1203)
T ss_pred             eeEEEeehhhhccccCCcchhhhhhcCcccHHHHHHHHHHHHHHHhhcccchhHHHHHHHccCCcCCceEecCcchhhhh
Confidence            2333222  2221     1 3344677999999887654433      2  233333333333     334334444443


Q ss_pred             cCCCCCCE-EEEEeeeccccCCCCccccceeeEEeeeeccCCceEEEE-----ecCCCcHHHHHHHHhhcCCCCCCceEE
Q 045158          143 YGIREFSE-IIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASIPLE-----MQDSSTVNELRHLLLSSKILPREDYIF  216 (252)
Q Consensus       143 y~i~~~s~-i~l~~~~~~~~~~~~~~~~~~i~v~~~~~~~~g~~~~l~-----v~~~~tV~~Lk~~i~~~~gip~~~~~l  216 (252)
                      -+-.-.+- +...+.  .....+++...+.++|+    .|+..+..+.     +-..+.+.++|+.+.+--|||.+..-+
T Consensus      1031 ~~~~~~~~~~~qE~~--deV~~~k~~~sL~i~vR----RW~Ps~~e~~pFQEV~Ld~~~~~E~Re~LS~ISgIPiD~l~~ 1104 (1203)
T KOG4598|consen 1031 RSYNWCSHLYLQEIT--DEVMIGKPGESLPIMVR----RWRPSTVEVNPFQEVLLDANAEVEFREALSKISGIPVDRLAI 1104 (1203)
T ss_pred             hhhhhHHHHHHHHHH--hhcccCCCCccchhhhe----eccccceecCCceeEEecCcchHHHHHHHHHhcCCchhhhhh
Confidence            32000000 000000  01112234445677765    3544444331     234568899999999999999998644


Q ss_pred             e-------ec-CeeecCCccccccC
Q 045158          217 I-------HK-QRIMRDNCSLRWHG  233 (252)
Q Consensus       217 ~-------~~-g~~l~d~~tL~~y~  233 (252)
                      .       +. =..|+=...+.||.
T Consensus      1105 ~Kl~~~FPC~~IS~Ld~~e~~~W~~ 1129 (1203)
T KOG4598|consen 1105 TKLKEFFPCKWISRLDMLENKVWTK 1129 (1203)
T ss_pred             hhcccCCCcchhhhhhhhhcccccc
Confidence            3       22 12445455566664

>PLN02799 Molybdopterin synthase sulfur carrier subunit

Probab=90.50  E-value=1.3  Score=30.60  Aligned_cols=60  Identities=17%  Similarity=0.200  Sum_probs=40.0

Q ss_pred             ceEEEEecCCCcHHHHHHHHhhcC-CCCC--CceEEeecCeeecCCccccccCCCCCCEEEEecCeecC
Q 045158          184 ASIPLEMQDSSTVNELRHLLLSSK-ILPR--EDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSR  249 (252)
Q Consensus       184 ~~~~l~v~~~~tV~~Lk~~i~~~~-gip~--~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~  249 (252)
                      ....+++....||++|++.+.... ++..  ....+..+|+...     .++-+++||+|.+++ .++|
T Consensus        19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~P-pvsG   81 (82)
T PLN02799         19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAIIP-PISG   81 (82)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEeC-CCCC
Confidence            445677777889999999997765 2221  1234556776643     456789999999874 3443

>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain

Probab=90.09  E-value=1.5  Score=29.91  Aligned_cols=56  Identities=14%  Similarity=0.153  Sum_probs=45.5

Q ss_pred             ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCc-eEEee----cC--eeecCCccccccCCC
Q 045158          180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPRED-YIFIH----KQ--RIMRDNCSLRWHGVE  235 (252)
Q Consensus       180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~-~~l~~----~g--~~l~d~~tL~~y~I~  235 (252)
                      .+.|....++|+++.|+.+|-++|+++.||.... +-|.+    +|  .-|+.+++|.++...
T Consensus         3 llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~   65 (80)
T PF09379_consen    3 LLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK   65 (80)
T ss_dssp             ESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred             CcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence            4678889999999999999999999999998655 35555    22  568889999999888

The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....

>smart00666 PB1 PB1 domain

Probab=90.08  E-value=1.6  Score=29.83  Aligned_cols=45  Identities=13%  Similarity=0.229  Sum_probs=37.5

Q ss_pred             EEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECc
Q 045158           86 HIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSG  130 (252)
Q Consensus        86 ~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g  130 (252)
                      .+.+++.+....+.++...|-.+|+++|.++++.+.....|.|..
T Consensus         3 ~vK~~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D   47 (81)
T smart00666        3 DVKLRYGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD   47 (81)
T ss_pred             cEEEEECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence            344556778889999999999999999999999987777787754

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]

Probab=90.07  E-value=1.6  Score=30.76  Aligned_cols=64  Identities=14%  Similarity=0.260  Sum_probs=56.8

Q ss_pred             eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           91 FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        91 ~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      ..|.++.+.+..+.|...|-...+.+.|=..+..++.|+|+.+. .+.|=.+++..+++.|..+.
T Consensus        32 qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~-~dqTP~dldmEdnd~iEav~   95 (103)
T COG5227          32 QDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRID-LDQTPGDLDMEDNDEIEAVT   95 (103)
T ss_pred             CCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecC-CCCChhhcCCccchHHHHHH
Confidence            36788999999999999999999999999999999999999995 77999999999988776543

>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function

Probab=90.07  E-value=1.7  Score=28.57  Aligned_cols=63  Identities=17%  Similarity=0.255  Sum_probs=48.2

Q ss_pred             CCceEEEEecCCCcHHHHHHHHhhc---CCCCCCceEEee-cCeeecCCccccccCCCCCCEEEEec
Q 045158          182 NGASIPLEMQDSSTVNELRHLLLSS---KILPREDYIFIH-KQRIMRDNCSLRWHGVEYGDILYVFK  244 (252)
Q Consensus       182 ~g~~~~l~v~~~~tV~~Lk~~i~~~---~gip~~~~~l~~-~g~~l~d~~tL~~y~I~~gsti~l~~  244 (252)
                      +|+...++...+....-.+++.-+.   .|-|++.+-|-- .|.+++-++...|||+..|-+++|.-
T Consensus         4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsL   70 (76)
T PF10790_consen    4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSL   70 (76)
T ss_pred             CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEe
Confidence            4677777766666655556555443   478999987764 67899999999999999999999853

>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]

Probab=90.04  E-value=0.14  Score=44.75  Aligned_cols=54  Identities=22%  Similarity=0.297  Sum_probs=43.2

Q ss_pred             CCeEEEEEecCCCcHHHHHHHHHHHhC-CC-CCceEEEEcCeecCCCCCccccccc
Q 045158            8 NGHEFVLEVGLQEPVLEIKRKIEQIFN-IP-ATSQTLAVSGWELVDGLDMEDYPIV   61 (252)
Q Consensus         8 ~g~~~~l~v~~~~tV~~lK~~I~~~~~-i~-~~~q~L~~~g~~L~d~~~L~~~~i~   61 (252)
                      .-+.++|..+...||++||..+....- -| +..|||+|.|+.|.|+..|.+.-++
T Consensus        20 ~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrk   75 (391)
T KOG4583|consen   20 SYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRK   75 (391)
T ss_pred             cccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHH
Confidence            345567888899999999999887652 33 3569999999999999988887654

>PRK06488 sulfur carrier protein ThiS; Validated

Probab=90.02  E-value=2.5  Score=27.79  Aligned_cols=57  Identities=9%  Similarity=0.064  Sum_probs=41.3

Q ss_pred             EeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           90 KFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        90 ~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      .++|+.+.+  + ..|+.+|.+.+    ++++....+-.++..+.  .....+.-+++|+.|.++-
T Consensus         4 ~~Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~--~~~~~~~~L~dgD~Ieiv~   60 (65)
T PRK06488          4 FVNGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH--KEARAQFVLHEGDRIEILS   60 (65)
T ss_pred             EECCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC--HHHcCccccCCCCEEEEEE
Confidence            345777766  3 35888888654    67766666778998884  4567788899999998874

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=88.47  E-value=1.9  Score=30.36  Aligned_cols=37  Identities=16%  Similarity=0.143  Sum_probs=32.7

Q ss_pred             CCeEEEEEecCCCcHHHHHHHHHHHhCCCCC---ceEEEE
Q 045158            8 NGHEFVLEVGLQEPVLEIKRKIEQIFNIPAT---SQTLAV   44 (252)
Q Consensus         8 ~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~---~q~L~~   44 (252)
                      +|+.+.+.+.|++.+.+|++.|++++|+...   ...|.|
T Consensus         9 ~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y   48 (86)
T cd06409           9 KGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY   48 (86)
T ss_pred             CCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence            8999999999999999999999999999873   455555

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function

Probab=88.43  E-value=2.5  Score=27.84  Aligned_cols=64  Identities=17%  Similarity=0.273  Sum_probs=49.2

Q ss_pred             CCcEEEEeeCCCccHHHHHHHHHHHh---CCCCccEEEEE-CceecccccccccccCCCCCCEEEEEee
Q 045158           92 PSRKFNIDVDRTDTVRSLKEKIHIID---GTPIKRMLLFF-SGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        92 ~g~~~~l~v~~~~TV~~lK~~I~~~~---gip~~~q~L~~-~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      .|+...++.+.+...--+.++--+..   |-|++...|.- +|..| |-++.+.|||+.++-++.|.+|
T Consensus         4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vl-D~~kKveD~GftngvkLFLsLK   71 (76)
T PF10790_consen    4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVL-DVNKKVEDFGFTNGVKLFLSLK   71 (76)
T ss_pred             CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEe-eccchhhhccccccceEEEEee
Confidence            46677788888877777666665555   46888777763 67777 5789999999999999999875

>PRK06437 hypothetical protein; Provisional

Probab=88.16  E-value=5.8  Score=26.37  Aligned_cols=54  Identities=11%  Similarity=0.227  Sum_probs=42.2

Q ss_pred             CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           92 PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        92 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      .++...++++...||++|=+.    .|+++....+..+|..+.      .++-+++|+.|.++-
T Consensus         9 g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~------~~~~L~dgD~Veiv~   62 (67)
T PRK06437          9 GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL------EDHNVKKEDDVLILE   62 (67)
T ss_pred             CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC------CceEcCCCCEEEEEe
Confidence            445677788888899887654    588888888889999984      466788999998863

>PRK08364 sulfur carrier protein ThiS; Provisional

Probab=88.02  E-value=6.1  Score=26.44  Aligned_cols=61  Identities=11%  Similarity=0.069  Sum_probs=42.8

Q ss_pred             EEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           85 IHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        85 ~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      |.|.++-......+++....||.+|-+.+    +++...-.+..||.... .     ++-+++|+.|.++-
T Consensus         5 m~v~vng~~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-~-----~~~l~~gD~Veii~   65 (70)
T PRK08364          5 IRVKVIGRGIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-E-----DDPVKDGDYVEVIP   65 (70)
T ss_pred             EEEEEeccccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-C-----CcCcCCCCEEEEEc
Confidence            44444422235677888888999888665    77777667778888873 3     56688999988763

>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown

Probab=87.67  E-value=1.5  Score=32.85  Aligned_cols=55  Identities=22%  Similarity=0.281  Sum_probs=39.2

Q ss_pred             ecC-CCcHHHHHHHHhhc----CCCCCC------ceEEee----------------cC-eee---cCCccccccCCCCCC
Q 045158          190 MQD-SSTVNELRHLLLSS----KILPRE------DYIFIH----------------KQ-RIM---RDNCSLRWHGVEYGD  238 (252)
Q Consensus       190 v~~-~~tV~~Lk~~i~~~----~gip~~------~~~l~~----------------~g-~~l---~d~~tL~~y~I~~gs  238 (252)
                      |+. +.||.+|++.+.+.    .|+||-      ..-+++                +. -.|   +++.||.++||.++.
T Consensus        22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET  101 (122)
T PF10209_consen   22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET  101 (122)
T ss_pred             CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence            666 77999998887764    466652      223332                11 256   788999999999999


Q ss_pred             EEEEec
Q 045158          239 ILYVFK  244 (252)
Q Consensus       239 ti~l~~  244 (252)
                      .|-+|.
T Consensus       102 EiSfF~  107 (122)
T PF10209_consen  102 EISFFN  107 (122)
T ss_pred             eeeeeC
Confidence            998874

>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional

Probab=87.39  E-value=2.5  Score=37.29  Aligned_cols=62  Identities=23%  Similarity=0.231  Sum_probs=46.9

Q ss_pred             cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158          181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG  251 (252)
Q Consensus       181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~  251 (252)
                      ++|+.+.+  ....|+.+|-+.+    +++.+...+..||+.. +.....++-+++||.|.|+  +..+||
T Consensus         5 VNGk~~el--~e~~TL~dLL~~L----~i~~~~VAVeVNgeIV-pr~~w~~t~LkeGD~IEII--~~VgGG   66 (326)
T PRK11840          5 LNGEPRQV--PAGLTIAALLAEL----GLAPKKVAVERNLEIV-PRSEYGQVALEEGDELEIV--HFVGGG   66 (326)
T ss_pred             ECCEEEec--CCCCcHHHHHHHc----CCCCCeEEEEECCEEC-CHHHcCccccCCCCEEEEE--EEecCC
Confidence            35776544  5556888776654    8888899999999776 4456677889999999999  677776

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=87.22  E-value=3.6  Score=28.19  Aligned_cols=45  Identities=13%  Similarity=0.180  Sum_probs=38.0

Q ss_pred             EEEEEeCCeEEE-EEecCCCcHHHHHHHHHHHhCCCCCceEEEEcC
Q 045158            2 RIIIVANGHEFV-LEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSG   46 (252)
Q Consensus         2 ~v~v~~~g~~~~-l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g   46 (252)
                      +|.+.+.+.... +.+..+.|..+|+.+|++.++.+.....|.|..
T Consensus         3 ~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D   48 (84)
T PF00564_consen    3 RVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD   48 (84)
T ss_dssp             EEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred             EEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence            344566888887 999999999999999999999997778888853

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain

Probab=86.95  E-value=7.5  Score=26.32  Aligned_cols=54  Identities=11%  Similarity=0.070  Sum_probs=42.0

Q ss_pred             CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCc-eEEEE----cC--eecCCCCCccccccc
Q 045158            8 NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATS-QTLAV----SG--WELVDGLDMEDYPIV   61 (252)
Q Consensus         8 ~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~-q~L~~----~g--~~L~d~~~L~~~~i~   61 (252)
                      +|...+++++++.|+.++=..|+++.|+.... .-|.|    +|  .-|+.+.+|.++...
T Consensus         5 D~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~   65 (80)
T PF09379_consen    5 DGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK   65 (80)
T ss_dssp             SEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence            78889999999999999999999999987443 56777    12  347777777777655

The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....

>PRK06944 sulfur carrier protein ThiS; Provisional

Probab=86.89  E-value=4.9  Score=26.19  Aligned_cols=61  Identities=18%  Similarity=0.195  Sum_probs=39.7

Q ss_pred             cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158          181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG  251 (252)
Q Consensus       181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~  251 (252)
                      ++|+.+.+  ....|+++|.+.+.    ++ ....+..+|+.... ..-.+.-+++||+|.++  +..+||
T Consensus         5 vNg~~~~~--~~~~tl~~ll~~l~----~~-~~~~v~vN~~~v~~-~~~~~~~L~~gD~vei~--~~v~GG   65 (65)
T PRK06944          5 LNQQTLSL--PDGATVADALAAYG----AR-PPFAVAVNGDFVAR-TQHAARALAAGDRLDLV--QPVAGG   65 (65)
T ss_pred             ECCEEEEC--CCCCcHHHHHHhhC----CC-CCeEEEECCEEcCc-hhcccccCCCCCEEEEE--eeccCC
Confidence            34766544  55678999888773    33 23566677765432 23445568999999998  556665

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.87  E-value=0.91  Score=39.72  Aligned_cols=55  Identities=16%  Similarity=0.086  Sum_probs=45.1

Q ss_pred             EEecCCCcHHHHHHHHhhcCCCCCCceEEee---cC-----eeecCCccccccCCCCCCEEEE
Q 045158          188 LEMQDSSTVNELRHLLLSSKILPREDYIFIH---KQ-----RIMRDNCSLRWHGVEYGDILYV  242 (252)
Q Consensus       188 l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~---~g-----~~l~d~~tL~~y~I~~gsti~l  242 (252)
                      -.|..+-||.+++.++..+.|+.+..++|.+   +|     ..++-+..|.+|.|++||.+.+
T Consensus       352 ~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lv  414 (418)
T KOG2982|consen  352 GLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLV  414 (418)
T ss_pred             eEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeee
Confidence            3466678999999999999999999987776   33     3555677899999999999865

>TIGR01687 moaD_arch MoaD family protein, archaeal

Probab=86.73  E-value=6.4  Score=27.37  Aligned_cols=62  Identities=23%  Similarity=0.262  Sum_probs=40.7

Q ss_pred             ceEEEEecCCCcHHHHHHHHhhcCCC-----------CCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCC
Q 045158          184 ASIPLEMQDSSTVNELRHLLLSSKIL-----------PREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRG  250 (252)
Q Consensus       184 ~~~~l~v~~~~tV~~Lk~~i~~~~gi-----------p~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~  250 (252)
                      ....++++ ..||.+|.+.+.+++.-           ..+...+..+|+....+.   ..-+++||+|.+++ .++||
T Consensus        16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~---~~~l~dgdev~i~P-pvsGG   88 (88)
T TIGR01687        16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGL---GTELKDGDVVAIFP-PVSGG   88 (88)
T ss_pred             ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccC---CCCCCCCCEEEEeC-CCcCC
Confidence            34567776 78999999999877531           112345566776555432   26789999999874 44443

Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.

>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases

Probab=86.46  E-value=2.7  Score=28.53  Aligned_cols=43  Identities=16%  Similarity=0.128  Sum_probs=37.6

Q ss_pred             EEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcC
Q 045158            4 IIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSG   46 (252)
Q Consensus         4 ~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g   46 (252)
                      .|.+ +|..-.+.+.|++||.|+=.++.++.|+.++.-.+++.|
T Consensus         3 ~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~   46 (72)
T cd01760           3 RVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG   46 (72)
T ss_pred             EEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence            4545 888889999999999999999999999999888777654

The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.

>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal

Probab=86.44  E-value=6  Score=27.04  Aligned_cols=59  Identities=25%  Similarity=0.272  Sum_probs=40.6

Q ss_pred             eEEEEecCC-CcHHHHHHHHhhcCC-CC--CCceEEeecCeeecCCccccccCCCCCCEEEEecCeecC
Q 045158          185 SIPLEMQDS-STVNELRHLLLSSKI-LP--REDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSR  249 (252)
Q Consensus       185 ~~~l~v~~~-~tV~~Lk~~i~~~~g-ip--~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~  249 (252)
                      ...+++... .||.+|++.+.+++. +-  .....+..+++...+     +.-+++||+|.+++ .++|
T Consensus        17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~P-pvsG   79 (80)
T TIGR01682        17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIP-PVSG   79 (80)
T ss_pred             eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeC-CCCC
Confidence            346777766 899999999988863 21  123455567766553     56889999999874 3444

The C-terminal Gly-Gly of this model is critical to function.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=86.42  E-value=4.7  Score=27.59  Aligned_cols=46  Identities=13%  Similarity=0.182  Sum_probs=37.7

Q ss_pred             EEEEEEeCCcEEE-EeeCCCccHHHHHHHHHHHhCCCCccEEEEECc
Q 045158           85 IHIIIKFPSRKFN-IDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSG  130 (252)
Q Consensus        85 ~~i~v~~~g~~~~-l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g  130 (252)
                      +.+-+.+.+.... +.+..+.|..+|+.+|++.++.+.....|.|.+
T Consensus         2 ~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D   48 (84)
T PF00564_consen    2 VRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD   48 (84)
T ss_dssp             EEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred             EEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence            3455566777666 899999999999999999999998888888843

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=86.24  E-value=3.6  Score=27.98  Aligned_cols=45  Identities=20%  Similarity=0.202  Sum_probs=36.5

Q ss_pred             EEEEEeCCeEEEEEec-CCCcHHHHHHHHHHHhCCCCCceEEEEcC
Q 045158            2 RIIIVANGHEFVLEVG-LQEPVLEIKRKIEQIFNIPATSQTLAVSG   46 (252)
Q Consensus         2 ~v~v~~~g~~~~l~v~-~~~tV~~lK~~I~~~~~i~~~~q~L~~~g   46 (252)
                      +|.+.++|....+.+. .+.|..+|+.+|+++++.+.....+.|..
T Consensus         2 ~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D   47 (81)
T cd05992           2 RVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD   47 (81)
T ss_pred             cEEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence            4556678888899988 99999999999999999986555665654

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=86.03  E-value=5  Score=27.91  Aligned_cols=35  Identities=11%  Similarity=0.173  Sum_probs=31.3

Q ss_pred             EEEEEeCCeEEEEEecC--CCcHHHHHHHHHHHhCCC
Q 045158            2 RIIIVANGHEFVLEVGL--QEPVLEIKRKIEQIFNIP   36 (252)
Q Consensus         2 ~v~v~~~g~~~~l~v~~--~~tV~~lK~~I~~~~~i~   36 (252)
                      +|.++++|.+..+.+++  +.+..+|++.|+..++++
T Consensus         2 ~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~   38 (81)
T cd06396           2 NLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN   38 (81)
T ss_pred             EEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence            45567799999999999  669999999999999999

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>smart00455 RBD Raf-like Ras-binding domain

Probab=85.83  E-value=3.2  Score=27.94  Aligned_cols=43  Identities=12%  Similarity=0.098  Sum_probs=37.6

Q ss_pred             EEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcC
Q 045158            4 IIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSG   46 (252)
Q Consensus         4 ~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g   46 (252)
                      .|.+ +|+...+.+.|+.|+.|+=.++.++.|+.++.-.++..|
T Consensus         3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g   46 (70)
T smart00455        3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG   46 (70)
T ss_pred             EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence            3444 889999999999999999999999999999888887755

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=85.73  E-value=6.5  Score=27.68  Aligned_cols=47  Identities=15%  Similarity=0.148  Sum_probs=37.8

Q ss_pred             cEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECce
Q 045158           84 KIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGI  131 (252)
Q Consensus        84 ~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~  131 (252)
                      .+.|-|.+.|..+.+.++++.+..+|..+|.+++++. ....+.|...
T Consensus         2 ~ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE   48 (86)
T cd06408           2 KIRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD   48 (86)
T ss_pred             cEEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence            3566666789999999999999999999999999995 4555656443

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]

Probab=85.53  E-value=1.4  Score=39.49  Aligned_cols=69  Identities=20%  Similarity=0.349  Sum_probs=56.0

Q ss_pred             CcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHh-CCCCccEEEE--ECceecccccccccccCCCCCCEE
Q 045158           83 DKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIID-GTPIKRMLLF--FSGIELDDEFRNLSEYGIREFSEI  151 (252)
Q Consensus        83 ~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~-gip~~~q~L~--~~g~~L~~d~~~L~~y~i~~~s~i  151 (252)
                      +.-.|-|++ +|...-..++.+.||.+++.-|.... +.+...+.|+  |--++|.||..||.+-|+.+-..+
T Consensus       304 PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv  376 (380)
T KOG2086|consen  304 PTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV  376 (380)
T ss_pred             CcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence            345688885 68888888999999999999998765 6666677776  678999989999999999876544

>cd00754 MoaD Ubiquitin domain of MoaD-like proteins

Probab=85.41  E-value=7  Score=26.44  Aligned_cols=55  Identities=11%  Similarity=0.149  Sum_probs=40.6

Q ss_pred             EEEEeeCCCccHHHHHHHHHHHhCC----CCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           95 KFNIDVDRTDTVRSLKEKIHIIDGT----PIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        95 ~~~l~v~~~~TV~~lK~~I~~~~gi----p~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      ...++++...||.+|.+.+....+-    ......+..||+...      .++-+++|+.|.++-
T Consensus        17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~------~~~~l~~gD~v~i~p   75 (80)
T cd00754          17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR------LDTPLKDGDEVAIIP   75 (80)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC------CCcccCCCCEEEEeC
Confidence            3667777789999999999887532    234455667888773      356789999999874

MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.

>smart00455 RBD Raf-like Ras-binding domain

Probab=85.33  E-value=2.4  Score=28.56  Aligned_cols=41  Identities=15%  Similarity=0.115  Sum_probs=36.0

Q ss_pred             ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecC
Q 045158          180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQ  220 (252)
Q Consensus       180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g  220 (252)
                      ..+|+...+.+.+..|+.++=+.+.++.|+.++...+...|
T Consensus         6 LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g   46 (70)
T smart00455        6 LPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG   46 (70)
T ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence            35789999999999999999999999999999887776644

>PLN02799 Molybdopterin synthase sulfur carrier subunit

Probab=85.15  E-value=6.1  Score=27.15  Aligned_cols=65  Identities=8%  Similarity=0.088  Sum_probs=42.6

Q ss_pred             EEEEEEe-C------C-cEEEEeeCCCccHHHHHHHHHHHh-CCCC--ccEEEEECceecccccccccccCCCCCCEEEE
Q 045158           85 IHIIIKF-P------S-RKFNIDVDRTDTVRSLKEKIHIID-GTPI--KRMLLFFSGIELDDEFRNLSEYGIREFSEIIV  153 (252)
Q Consensus        85 ~~i~v~~-~------g-~~~~l~v~~~~TV~~lK~~I~~~~-gip~--~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l  153 (252)
                      |.|.|++ .      | +...+++....||++|.+.+.... ++..  ..-.+..||+...      .++-+++|++|.+
T Consensus         2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~------~~~~l~dgDeVai   75 (82)
T PLN02799          2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT------ESAALKDGDELAI   75 (82)
T ss_pred             eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC------CCcCcCCCCEEEE
Confidence            5677773 1      3 456778888899999999997654 2211  1123556777652      3456788999988


Q ss_pred             Ee
Q 045158          154 FL  155 (252)
Q Consensus       154 ~~  155 (252)
                      +-
T Consensus        76 ~P   77 (82)
T PLN02799         76 IP   77 (82)
T ss_pred             eC
Confidence            63

>PF14453 ThiS-like: ThiS-like ubiquitin

Probab=84.93  E-value=4.9  Score=25.97  Aligned_cols=47  Identities=15%  Similarity=0.329  Sum_probs=35.6

Q ss_pred             EEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           97 NIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        97 ~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      .+++....|..+||.++.....      .++++|-+.. +     ++-+++|+.|.++-
T Consensus         9 ~~~~~~~~tl~~lr~~~k~~~D------I~I~NGF~~~-~-----d~~L~e~D~v~~Ik   55 (57)
T PF14453_consen    9 EIETEENTTLFELRKESKPDAD------IVILNGFPTK-E-----DIELKEGDEVFLIK   55 (57)
T ss_pred             EEEcCCCcCHHHHHHhhCCCCC------EEEEcCcccC-C-----ccccCCCCEEEEEe
Confidence            4567788899999998765322      5789999885 4     56778888888764

>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e

Probab=84.13  E-value=3.6  Score=38.89  Aligned_cols=64  Identities=22%  Similarity=0.348  Sum_probs=42.8

Q ss_pred             CceEEEEecCCCcHHHHHHHHhhc--CCCCC------CceEEee----cCe-eecCC-------------ccccccCCCC
Q 045158          183 GASIPLEMQDSSTVNELRHLLLSS--KILPR------EDYIFIH----KQR-IMRDN-------------CSLRWHGVEY  236 (252)
Q Consensus       183 g~~~~l~v~~~~tV~~Lk~~i~~~--~gip~------~~~~l~~----~g~-~l~d~-------------~tL~~y~I~~  236 (252)
                      +..+++.|-..|||..+|++|-+.  .+.|.      +..-|.+    .|+ .|.|.             +||+.|+|.+
T Consensus       201 ~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d  280 (539)
T PF08337_consen  201 SEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPD  280 (539)
T ss_dssp             STCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--T
T ss_pred             CceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCC
Confidence            345778888999999999999775  35553      3445543    122 45442             5899999999


Q ss_pred             CCEEEEecCe
Q 045158          237 GDILYVFKGT  246 (252)
Q Consensus       237 gsti~l~~~~  246 (252)
                      |+++-|++..
T Consensus       281 ga~vaLv~k~  290 (539)
T PF08337_consen  281 GATVALVPKQ  290 (539)
T ss_dssp             TEEEEEEES-
T ss_pred             CceEEEeecc
Confidence            9999998764

g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....

>PTZ00380 microtubule-associated protein (MAP); Provisional

Probab=83.64  E-value=3.6  Score=30.92  Aligned_cols=64  Identities=9%  Similarity=0.005  Sum_probs=43.8

Q ss_pred             cccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccc
Q 045158          167 IRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRW  231 (252)
Q Consensus       167 ~~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~  231 (252)
                      |+.++|.|.-..+. ..+..-+-|+...||+++...|+.+.++++++.+|..++..+..+.++.+
T Consensus        25 PdrIPVIvEk~~~s-~dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~   88 (121)
T PTZ00380         25 PGHVAVVVEAAEKA-GSKVHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGD   88 (121)
T ss_pred             CCccEEEEeecCCC-CCceEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHH
Confidence            44566666443221 23333336999999999999999999999999666667766666655543

>PF14451 Ub-Mut7C: Mut7-C ubiquitin

Probab=83.45  E-value=5.6  Score=27.65  Aligned_cols=53  Identities=19%  Similarity=0.221  Sum_probs=40.2

Q ss_pred             CceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEe-ecCeeecCCccccccCCCCCCEEEEec
Q 045158          183 GASIPLEMQDSSTVNELRHLLLSSKILPREDYIFI-HKQRIMRDNCSLRWHGVEYGDILYVFK  244 (252)
Q Consensus       183 g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~-~~g~~l~d~~tL~~y~I~~gsti~l~~  244 (252)
                      +..+.+..+...||+++-+.+    |+|....-++ -+|+.-+-     +|-+++||.|.+++
T Consensus        22 ~~~~~~~~~~~~tvkd~IEsL----GVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~P   75 (81)
T PF14451_consen   22 GGPFTHPFDGGATVKDVIESL----GVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVYP   75 (81)
T ss_pred             CCceEEecCCCCcHHHHHHHc----CCChHHeEEEEECCEECCC-----cccCCCCCEEEEEe
Confidence            566778888888998876655    9999887444 47765443     48899999999875

>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor

Probab=82.86  E-value=4.2  Score=27.79  Aligned_cols=49  Identities=12%  Similarity=0.044  Sum_probs=39.7

Q ss_pred             ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCcc
Q 045158          180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCS  228 (252)
Q Consensus       180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~t  228 (252)
                      ..+|+..++.|.+.+|++++-+.++.+.++.++..+|--+...++|..-
T Consensus         6 lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk~~~~e~~~~   54 (77)
T cd01818           6 LPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLKFLRMENHEY   54 (77)
T ss_pred             CCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEEEEEecCCccE
Confidence            4679999999999999999999999999998887766555444565443

Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.

>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases

Probab=82.60  E-value=3  Score=28.32  Aligned_cols=41  Identities=15%  Similarity=0.057  Sum_probs=35.6

Q ss_pred             ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecC
Q 045158          180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQ  220 (252)
Q Consensus       180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g  220 (252)
                      ..+|+.-.+.|.+..|+.++-+++.++.|+.++.+.+...|
T Consensus         6 LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~   46 (72)
T cd01760           6 LPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG   46 (72)
T ss_pred             CcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence            35788999999999999999999999999999887666554

The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=82.44  E-value=5.3  Score=27.10  Aligned_cols=44  Identities=18%  Similarity=0.167  Sum_probs=34.5

Q ss_pred             EEEEeCCcEEEEeeC-CCccHHHHHHHHHHHhCCCCccEEEEECc
Q 045158           87 IIIKFPSRKFNIDVD-RTDTVRSLKEKIHIIDGTPIKRMLLFFSG  130 (252)
Q Consensus        87 i~v~~~g~~~~l~v~-~~~TV~~lK~~I~~~~gip~~~q~L~~~g  130 (252)
                      +.+++.|....+.+. ...|..+|+++|.++.+.+.....+.|..
T Consensus         3 vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D   47 (81)
T cd05992           3 VKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD   47 (81)
T ss_pred             EEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence            444566777778887 89999999999999999987566666644

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein

Probab=82.14  E-value=7.9  Score=25.34  Aligned_cols=56  Identities=13%  Similarity=0.160  Sum_probs=40.8

Q ss_pred             CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           92 PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        92 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      +|+.+  +++...||.+|.+.+    +++.....+..+|+...  .....++-+++|+.|.++-
T Consensus         5 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~--~~~~~~~~L~~gD~V~ii~   60 (65)
T cd00565           5 NGEPR--EVEEGATLAELLEEL----GLDPRGVAVALNGEIVP--RSEWASTPLQDGDRIEIVT   60 (65)
T ss_pred             CCeEE--EcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcC--HHHcCceecCCCCEEEEEE
Confidence            35544  455678999888664    57777778889999884  3445667899999998864

ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.

>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]

Probab=82.12  E-value=2.5  Score=37.54  Aligned_cols=70  Identities=13%  Similarity=0.108  Sum_probs=58.4

Q ss_pred             CEEEEE-e--CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCC--CCccccccccCCcEEEEEe
Q 045158            1 MRIIIV-A--NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDG--LDMEDYPIVKEGTKIDLTI   71 (252)
Q Consensus         1 M~v~v~-~--~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~--~~L~~~~i~~~~t~i~l~~   71 (252)
                      |.++|. .  ..+.+.+++..+-....++..++...|++.+.--|+|+++++.++  .++.+||+..+.+ +.+--
T Consensus         1 M~~tvs~~l~~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~ds-l~lr~   75 (380)
T KOG0012|consen    1 MSLTVSVALNFEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDS-LALRC   75 (380)
T ss_pred             CeEEEEEEecceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhccccccee-EeccC
Confidence            677773 2  566788999999999999999999999999999999999999877  3789999997766 55443

>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e

Probab=81.81  E-value=8.9  Score=36.32  Aligned_cols=64  Identities=27%  Similarity=0.320  Sum_probs=43.0

Q ss_pred             cEEEEeeCCCccHHHHHHHHHHHh--CCC------CccEEEEE----Cce-eccccc------------ccccccCCCCC
Q 045158           94 RKFNIDVDRTDTVRSLKEKIHIID--GTP------IKRMLLFF----SGI-ELDDEF------------RNLSEYGIREF  148 (252)
Q Consensus        94 ~~~~l~v~~~~TV~~lK~~I~~~~--gip------~~~q~L~~----~g~-~L~~d~------------~~L~~y~i~~~  148 (252)
                      ..+.+.|-.-|||.++|++|-+..  +.|      ++..-|.|    .|. .|.|++            .||+.|+|.+|
T Consensus       202 ~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg  281 (539)
T PF08337_consen  202 EEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPDG  281 (539)
T ss_dssp             TCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--TT
T ss_pred             ceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCCC
Confidence            447788888999999999998764  554      34455655    223 454221            49999999999


Q ss_pred             CEEEEEeee
Q 045158          149 SEIIVFLKT  157 (252)
Q Consensus       149 s~i~l~~~~  157 (252)
                      +++.|+.+.
T Consensus       282 a~vaLv~k~  290 (539)
T PF08337_consen  282 ATVALVPKQ  290 (539)
T ss_dssp             EEEEEEES-
T ss_pred             ceEEEeecc
Confidence            999998863

g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....

>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]

Probab=80.86  E-value=2.9  Score=37.13  Aligned_cols=64  Identities=17%  Similarity=0.212  Sum_probs=56.5

Q ss_pred             CcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccc-cccccccCCCCCCEEEEEee
Q 045158           93 SRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDE-FRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        93 g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d-~~~L~~y~i~~~s~i~l~~~  156 (252)
                      ...+++++.......+++..++...|++.+.-.|+|+.+.+..+ +..+..||...++++.+.-+
T Consensus        12 ~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~k   76 (380)
T KOG0012|consen   12 EKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCK   76 (380)
T ss_pred             eeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCC
Confidence            45688999999999999999999999999999999999999645 57899999999999887653

>PF14453 ThiS-like: ThiS-like ubiquitin

Probab=80.21  E-value=5.6  Score=25.71  Aligned_cols=40  Identities=8%  Similarity=0.338  Sum_probs=30.6

Q ss_pred             EEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccc
Q 045158           13 VLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDY   58 (252)
Q Consensus        13 ~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~   58 (252)
                      .+++..+.|+.+||.++..      +.-.++++|-+..++..|.+.
T Consensus         9 ~~~~~~~~tl~~lr~~~k~------~~DI~I~NGF~~~~d~~L~e~   48 (57)
T PF14453_consen    9 EIETEENTTLFELRKESKP------DADIVILNGFPTKEDIELKEG   48 (57)
T ss_pred             EEEcCCCcCHHHHHHhhCC------CCCEEEEcCcccCCccccCCC
Confidence            4677888999999998754      333789999998877666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	252
2kan_A	94	Solution Nmr Structure Of Ubiquitin-Like Domain Of		1e-28
3u30_A	172	Crystal Structure Of A Linear-Specific Ubiquitin Fa		2e-09
2zvn_A	154	Nemo Cozi Domain Incomplex With Diubiquitin In P212		2e-09
2y5b_B	152	Structure Of Usp21 In Complex With Linear Diubiquit		3e-09
3b08_A	152	Crystal Structure Of The Mouse Hoil1-L-Nzf In Compl		3e-09
2w9n_A	152	Crystal Structure Of Linear Di-Ubiquitin Length = 1		3e-09
2k25_A	103	Automated Nmr Structure Of The Ubb By Fapsy Length		2e-04
3k9o_B	96	The Crystal Structure Of E2-25k And Ubb+1 Complex L		7e-04
4a18_K	129	T.Thermophila 60s Ribosomal Subunit In Complex With		7e-04
1sif_A	88	Crystal Structure Of A Multiple Hydrophobic Core Mu		8e-04

>pdb|2KAN|A Chain A, Solution Nmr Structure Of Ubiquitin-Like Domain Of Arabidopsis Thaliana Protein At2g32350. Northeast Structural Genomics Consortium Target Ar3433a Length = 94

Iteration: 1
 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 53/80 (66%), Positives = 72/80 (90%)
Query: 84  KIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEY 143
           KIH+ +KFPS++F ++VDRT+TV SLK+KIHI++ TPIKRM L++SGIEL D++RNL+EY
Sbjct: 15  KIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEY 74
Query: 144 GIREFSEIIVFLKTMNRLRD 163
           GI EFSEI+VFLK++NR +D
Sbjct: 75  GITEFSEIVVFLKSINRAKD 94

>pdb|3U30|A Chain A, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound To Linear Ubiquitin Length = 172

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 11/150 (7%)
Query: 8   NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKI 67
            G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY I KE T  
Sbjct: 29  TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-- 86
Query: 68  DLTINPFLQSSFNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLL 126
                  L         + I +K    +   ++V+ +DT+ ++K KI   +G P  +  L
Sbjct: 87  -------LHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRL 139
Query: 127 FFSGIELDDEFRNLSEYGIREFSEIIVFLK 156
            F+G +L+D  R LS+Y I++ S + + L+
Sbjct: 140 IFAGKQLED-GRTLSDYNIQKESTLHLVLR 168

>pdb|2ZVN|A Chain A, Nemo Cozi Domain Incomplex With Diubiquitin In P212121 Space Group Length = 154

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 11/150 (7%)
Query: 8   NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKI 67
            G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY I KE T  
Sbjct: 11  TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-- 68
Query: 68  DLTINPFLQSSFNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLL 126
                  L         + I +K    +   ++V+ +DT+ ++K KI   +G P  +  L
Sbjct: 69  -------LHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRL 121
Query: 127 FFSGIELDDEFRNLSEYGIREFSEIIVFLK 156
            F+G +L+D  R LS+Y I++ S + + L+
Sbjct: 122 IFAGKQLED-GRTLSDYNIQKESTLHLVLR 150

>pdb|2Y5B|B Chain B, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 152

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 11/150 (7%)
Query: 8   NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKI 67
            G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY I KE T  
Sbjct: 9   TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-- 66
Query: 68  DLTINPFLQSSFNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLL 126
                  L         + I +K    +   ++V+ +DT+ ++K KI   +G P  +  L
Sbjct: 67  -------LHLVLRLRGHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRL 119
Query: 127 FFSGIELDDEFRNLSEYGIREFSEIIVFLK 156
            F+G +L+D  R LS+Y I++ S + + L+
Sbjct: 120 IFAGKQLED-GRTLSDYNIQKESTLHLVLR 148

>pdb|3B08|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With Linear Di- Ubiquitin Length = 152

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 11/150 (7%)
Query: 8   NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKI 67
            G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY I KE T  
Sbjct: 9   TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-- 66
Query: 68  DLTINPFLQSSFNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLL 126
                  L         + I +K    +   ++V+ +DT+ ++K KI   +G P  +  L
Sbjct: 67  -------LHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRL 119
Query: 127 FFSGIELDDEFRNLSEYGIREFSEIIVFLK 156
            F+G +L+D  R LS+Y I++ S + + L+
Sbjct: 120 IFAGKQLED-GRTLSDYNIQKESTLHLVLR 148

>pdb|2W9N|A Chain A, Crystal Structure Of Linear Di-Ubiquitin Length = 152

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 11/150 (7%)
Query: 8   NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKI 67
            G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY I KE T  
Sbjct: 9   TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-- 66
Query: 68  DLTINPFLQSSFNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLL 126
                  L         + I +K    +   ++V+ +DT+ ++K KI   +G P  +  L
Sbjct: 67  -------LHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRL 119
Query: 127 FFSGIELDDEFRNLSEYGIREFSEIIVFLK 156
            F+G +L+D  R LS+Y I++ S + + L+
Sbjct: 120 IFAGKQLED-GRTLSDYNIQKESTLHLVLR 148

>pdb|2K25|A Chain A, Automated Nmr Structure Of The Ubb By Fapsy Length = 103

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 85  IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEY 143
           + I +K    +   ++V+ +DT+ ++K KI   +G P  +  L F+G +L+D  R LSEY
Sbjct: 9   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSEY 67
Query: 144 GIREFS--EIIVFLKTMNRLRDNP 165
            I++ S   +++ L+    LR++P
Sbjct: 68  NIQKESTLHLVLRLRGYADLREDP 91

>pdb|3K9O|B Chain B, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 96

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 85  IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEY 143
           + I +K    +   ++V+ +DT+ ++K KI   +G P  +  L F+G +L+D  R LS+Y
Sbjct: 2   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDY 60
Query: 144 GIREFS--EIIVFLKTMNRLRDNP 165
            I++ S   +++ L+    LR++P
Sbjct: 61  NIQKESTLHLVLRLRGYADLREDP 84

>pdb|4A18|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 129

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 85  IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEY 143
           + I +K    +   +DV+ +DT+ ++K KI   +G P  +  L F+G +L+D  R LS+Y
Sbjct: 1   MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDY 59
Query: 144 GIREFSEIIVFLK 156
            I++ S + + L+
Sbjct: 60  NIQKESTLHLVLR 72

>pdb|1SIF|A Chain A, Crystal Structure Of A Multiple Hydrophobic Core Mutant Of Ubiquitin Length = 88

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 85  IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEY 143
           + + IK    + F ++++ +DT+ +LK KI   +G P  +  L F+G +L+D  R LS+Y
Sbjct: 10  LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDY 68
Query: 144 GIREFSEIIVFLK 156
            I++ S + + L+
Sbjct: 69  NIQKESTLHLVLR 81

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	252
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	4e-25
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	1e-06
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	5e-18
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	1e-17
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	6e-17
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	3e-09
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	4e-14
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	5e-09
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	2e-12
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	3e-06
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	4e-04
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	4e-12
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	2e-05
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	1e-11
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	2e-06
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	3e-11
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	3e-06
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	4e-11
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	3e-07
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	5e-11
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	2e-06
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	7e-11
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	2e-09
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	7e-11
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	8e-07
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	8e-11
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	2e-06
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	1e-10
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	1e-05
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	1e-10
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	8e-07
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	2e-10
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	3e-06
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	3e-10
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	2e-05
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	3e-10
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	2e-06
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	4e-10
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	4e-06
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	4e-10
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	4e-06
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	6e-10
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	5e-04
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	7e-10
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	8e-06
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	7e-10
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	2e-06
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	7e-10
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	3e-06
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	9e-10
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	4e-05
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	1e-09
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	4e-05
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	1e-09
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	6e-05
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	1e-09
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	7e-06
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	2e-09
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	5e-05
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	2e-09
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	4e-04
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	2e-09
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	4e-05
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	2e-09
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	2e-05
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	3e-09
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	1e-05
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	3e-09
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	7e-05
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	3e-09
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	1e-05
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	8e-09
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	5e-06
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	1e-08
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	2e-05
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	1e-08
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	5e-05
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	1e-08
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	2e-04
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	2e-08
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	1e-05
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	2e-08
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	1e-05
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	3e-08
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	4e-06
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	5e-08
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	9e-04
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	6e-08
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	1e-05
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	6e-08
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	1e-04
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	9e-08
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	8e-05
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	1e-07
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	6e-05
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	5e-07
1we6_A	111	Splicing factor, putative; structural genomics, ub	7e-07
1we6_A	111	Splicing factor, putative; structural genomics, ub	2e-05
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	3e-06
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	3e-04
2kj6_A	97	Tubulin folding cofactor B; methods development, N	7e-06
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	2e-05
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	2e-05
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	1e-04
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	1e-04
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	2e-04
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	2e-04
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	5e-04

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score = 94.0 bits (234), Expect = 4e-25
 Identities = 53/81 (65%), Positives = 72/81 (88%)

Query: 83  DKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSE 142
            KIH+ +KFPS++F ++VDRT+TV SLK+KIHI++ TPIKRM L++SGIEL D++RNL+E
Sbjct: 14  RKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNE 73

Query: 143 YGIREFSEIIVFLKTMNRLRD 163
           YGI EFSEI+VFLK++NR +D
Sbjct: 74  YGITEFSEIVVFLKSINRAKD 94

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 1  MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLD-MEDYP 59
          + + +     +F +EV   E V  +K KI  + N P     L  SG EL D    + +Y 
Sbjct: 16 IHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYG 75

Query: 60 IVKEGTKIDLTINP 73
          I +    I + +  
Sbjct: 76 ITEFSE-IVVFLKS 88

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152

 Score = 77.4 bits (190), Expect = 5e-18
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 14/163 (8%)

Query: 1   MRIII-VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYP 59
           M+I +    G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY 
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 60  IVKEGTKIDLTINPFLQSSFNQHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGT 119
           I KE T               +      +     +   ++V+ +DT+ ++K KI   +G 
Sbjct: 61  IQKEST--------LHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 112

Query: 120 PIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLR 162
           P  +  L F+G +L+D  R LS+Y I++ S + + L    RLR
Sbjct: 113 PPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVL----RLR 150

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172

 Score = 76.6 bits (188), Expect = 1e-17
 Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 16/164 (9%)

Query: 1   MRIII-VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYP 59
           M+I +    G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY 
Sbjct: 21  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80

Query: 60  IVKEGTKIDLTINPFLQSSFNQHDKIHIIIKFPS-RKFNIDVDRTDTVRSLKEKIHIIDG 118
           I KE T         L         + I +K  + +   ++V+ +DT+ ++K KI   +G
Sbjct: 81  IQKEST---------LHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG 131

Query: 119 TPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLR 162
            P  +  L F+G +L+D  R LS+Y I++ S + + L    RLR
Sbjct: 132 IPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVL----RLR 170

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159

 Score = 74.6 bits (183), Expect = 6e-17
 Identities = 40/165 (24%), Positives = 69/165 (41%), Gaps = 15/165 (9%)

Query: 1   MRIII-VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLA--VSGWELVDGLDMED 57
             + + +  G+EF + +     V E+K +I Q   + A  Q LA   SG  L D + +  
Sbjct: 3   WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLAS 62

Query: 58  YPIVKEGTKIDLTINPFLQSSFNQHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIID 117
             +    T +       +    ++   I +      R    +V  T TV  LK+++  ++
Sbjct: 63  QGLGPGSTVL------LVVDKSDEPLSILVRN-NKGRSSTYEVRLTQTVAHLKQQVSGLE 115

Query: 118 GTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLR 162
           G       L F G  L+D+   L EYG++  S + + L    RLR
Sbjct: 116 GVQDDLFWLTFEGKPLEDQ-LPLGEYGLKPLSTVFMNL----RLR 155

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159

 Score = 53.8 bits (129), Expect = 3e-09
 Identities = 23/158 (14%), Positives = 56/158 (35%), Gaps = 16/158 (10%)

Query: 87  IIIKFPSRK-FNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFF--SGIELDDEFRNLSEY 143
           + +K  +   F + +  + +V  LK +I    G    +  L    SG+ L D    L+  
Sbjct: 5   LTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDR-VPLASQ 63

Query: 144 GIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLL 203
           G+             + +            +   +    G S   E++ + TV  L+  +
Sbjct: 64  GL----------GPGSTVLLVVDKSDEPLSILVRN--NKGRSSTYEVRLTQTVAHLKQQV 111

Query: 204 LSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILY 241
              + +  + +    + + + D   L  +G++    ++
Sbjct: 112 SGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVF 149

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score = 65.0 bits (159), Expect = 4e-14
 Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 79  FNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEF 137
            + H  +  +++      F ++VD  DT+  +K+KI      P+ +  L   GI +  E 
Sbjct: 5   HHHHSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILRED 64

Query: 138 RNLSEYGIREFSEIIVFLKT 157
             + +  I   S+I + + +
Sbjct: 65  LTVEQCQIVPTSDIQLEVSS 84

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score = 51.1 bits (123), Expect = 5e-09
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 1  MRIII-VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWE-LVDGLDMEDY 58
          M+ ++   NG  F LEV  ++ +L +K+KIE+  +IP + QTL V G   L + L +E  
Sbjct: 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQC 70

Query: 59 PIVKEGT 65
           IV    
Sbjct: 71 QIVPTSD 77

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score = 62.1 bits (151), Expect = 2e-12
 Identities = 6/79 (7%), Positives = 17/79 (21%), Gaps = 6/79 (7%)

Query: 85  IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEY 143
           +         ++    V+    V         +     +  L      E  +  ++ S  
Sbjct: 1   MSDTEAPVEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEV-KDASLV 59

Query: 144 GIREFSEIIVFLKTMNRLR 162
              +  + I          
Sbjct: 60  DYVQVRQPIFVA----HTA 74

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 10/66 (15%), Positives = 17/66 (25%), Gaps = 1/66 (1%)

Query: 1  MRIII-VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYP 59
          M          E    V    PV+      E++       +      +E V+  D     
Sbjct: 1  MSDTEAPVEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVD 60

Query: 60 IVKEGT 65
           V+   
Sbjct: 61 YVQVRQ 66

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 3/62 (4%), Positives = 12/62 (19%)

Query: 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDIL 240
           +        +++ + V     +    +    E  +F        +               
Sbjct: 8   VEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVDYVQVRQP 67

Query: 241 YV 242
             
Sbjct: 68  IF 69

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 60.1 bits (146), Expect = 4e-12
 Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 8/108 (7%)

Query: 60  IVKEGTKIDLTINPFLQSSFNQHDKIHIIIKFPS-RKFNIDVDRTDTVRSLKEKIHIIDG 118
           +++E + I+    P  +   N   +  + ++  + +   + V  TDTV  +K ++H  +G
Sbjct: 1   MIEEKSDIETLDIP--EPPPNSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEG 58

Query: 119 TPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDNPP 166
                   FFSG  L D+     E  I +   + V +          P
Sbjct: 59  VEPGSQRWFFSGRPLTDK-MKFEELKIPKDYVVQVIV----SQPVQNP 101

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 9  GHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGT 65
          G +  L V   + V  +KR++     +   SQ    SG  L D +  E+  I K+  
Sbjct: 33 GKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYV 89

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 58.9 bits (143), Expect = 1e-11
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 1/90 (1%)

Query: 77  SSFNQHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDE 136
           +       I + +K P  K +  V  T T++ LKE+I         +++L F+G  L D 
Sbjct: 10  APVQDPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDP 69

Query: 137 FRNLSEYGIREFSEIIVFLKTMNRLRDNPP 166
             +L++ G+R+   + + +K  +R   N  
Sbjct: 70  -DSLAQCGVRDGLTVHLVIKRQHRAMGNEC 98

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 10/65 (15%), Positives = 22/65 (33%)

Query: 1  MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPI 60
          +++ +     +    V     + ++K +I Q F        L  +G  L D   +    +
Sbjct: 18 IKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGV 77

Query: 61 VKEGT 65
              T
Sbjct: 78 RDGLT 82

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score = 56.9 bits (138), Expect = 3e-11
 Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 94  RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIV 153
           ++  ID++ TD V  +KE++   +G P ++  L +SG +++DE +  ++Y I   S + +
Sbjct: 11  KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDE-KTAADYKILGGSVLHL 69

Query: 154 FLKTMNRLR 162
            L     LR
Sbjct: 70  VL----ALR 74

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score = 43.0 bits (102), Expect = 3e-06
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 9  GHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGT 65
          G E  +++   + V  IK ++E+   IP   Q L  SG ++ D     DY I+    
Sbjct: 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSV 66

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 57.4 bits (139), Expect = 4e-11
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 83  DKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSE 142
             I + +K P       +     VR  K++I         R++L F+G  L D+   LS+
Sbjct: 16  RIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQ-DILSQ 74

Query: 143 YGIRE 147
            GI +
Sbjct: 75  RGILD 79

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 11/65 (16%), Positives = 22/65 (33%)

Query: 1  MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPI 60
          +R+ +          +     V   K++I +  +  A    L  +G  L D   +    I
Sbjct: 18 IRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGI 77

Query: 61 VKEGT 65
          +   T
Sbjct: 78 LDGST 82

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 56.7 bits (137), Expect = 5e-11
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 83  DKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSE 142
           + + + I +   K ++ V    T   LK+KIH I G P     + + G+  +D+   L E
Sbjct: 16  ELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPEDK--TLRE 73

Query: 143 YGIRE 147
             +  
Sbjct: 74  IKVTS 78

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 1  MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPI 60
          + + I+ N  +  ++V L     E+K+KI  I  +P   Q +   G  + +   + +  +
Sbjct: 18 VDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKG-LVPEDKTLREIKV 76

Query: 61 VKEGTKI 67
             G KI
Sbjct: 77 -TSGAKI 82

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score = 56.1 bits (136), Expect = 7e-11
 Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 80  NQHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRN 139
           + H  I + +KF  +   + V    TV+ LK ++  I     +   L F G  L +    
Sbjct: 8   HSHSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVET-ST 66

Query: 140 LSEYGIREFSEIIV 153
           L +  +   +++++
Sbjct: 67  LKQSDVGSGAKLML 80

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score = 51.9 bits (125), Expect = 2e-09
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 1  MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPI 60
          +++ +   G    L V     V ++K +++ I N+    Q L   G  LV+   ++   +
Sbjct: 13 IKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDV 72

Query: 61 VKEGTKI 67
             G K+
Sbjct: 73 -GSGAKL 78

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score = 56.2 bits (136), Expect = 7e-11
 Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 94  RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIV 153
           ++  ID++ TD V  +KE++   +G P ++  L +SG +++DE +  ++Y I   S + +
Sbjct: 11  KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDE-KTAADYKILGGSVLHL 69

Query: 154 FLKTMNRLR 162
            L     LR
Sbjct: 70  VL----ALR 74

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score = 45.0 bits (107), Expect = 8e-07
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 9  GHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGT 65
          G E  +++   + V  IK ++E+   IP   Q L  SG ++ D     DY I+    
Sbjct: 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSV 66

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score = 56.6 bits (137), Expect = 8e-11
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 83  DKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSE 142
             I + +K P  K +  V  T T++ LKE+I         +++L F+G  L D   +L++
Sbjct: 21  HLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDP-DSLAQ 79

Query: 143 YGIREFSEIIVFLKTMNR 160
            G+R+   + + +K  +R
Sbjct: 80  CGVRDGLTVHLVIKRQHR 97

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 10/65 (15%), Positives = 22/65 (33%)

Query: 1  MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPI 60
          +++ +     +    V     + ++K +I Q F        L  +G  L D   +    +
Sbjct: 23 IKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGV 82

Query: 61 VKEGT 65
              T
Sbjct: 83 RDGLT 87

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score = 56.2 bits (136), Expect = 1e-10
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 83  DKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSE 142
             + + +K P  K    V    +V+  KE+I     +   +++L F+G  L D+   LS+
Sbjct: 24  KIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQ-DTLSQ 82

Query: 143 YGIRE 147
           +GI +
Sbjct: 83  HGIHD 87

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 12/65 (18%), Positives = 22/65 (33%)

Query: 1  MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPI 60
          M++ +     +    V     V + K +I + F        L  +G  L D   +  + I
Sbjct: 26 MKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGI 85

Query: 61 VKEGT 65
              T
Sbjct: 86 HDGLT 90

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score = 56.3 bits (136), Expect = 1e-10
 Identities = 15/73 (20%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 85  IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEY 143
           + +  K F   K  +D++ ++T+   K K+         ++ L +SG  L D  + +SE 
Sbjct: 2   VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDS-KTVSEC 60

Query: 144 GIREFSEIIVFLK 156
           G+++  +++  + 
Sbjct: 61  GLKDGDQVVFMVS 73

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score = 45.5 bits (108), Expect = 8e-07
 Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 1/66 (1%)

Query: 1  MRIII-VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYP 59
          + +        +  L++     +LE K K+ Q  +   +   L  SG  L D   + +  
Sbjct: 2  VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECG 61

Query: 60 IVKEGT 65
          +     
Sbjct: 62 LKDGDQ 67

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score = 54.7 bits (132), Expect = 2e-10
 Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 6/80 (7%)

Query: 84  KIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSE 142
            + I +K    +   ++V+ +DT+ ++K KI   +G P  +  L F+G +L+D  R LS+
Sbjct: 3   HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSD 61

Query: 143 YGIREFSEIIVFLKTMNRLR 162
           Y I+++S + + L    RLR
Sbjct: 62  YNIQKWSTLFLLL----RLR 77

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score = 43.1 bits (102), Expect = 3e-06
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 1  MRIII-VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYP 59
          M+I +    G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY 
Sbjct: 4  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63

Query: 60 IVKEGT 65
          I K  T
Sbjct: 64 IQKWST 69

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score = 55.0 bits (133), Expect = 3e-10
 Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 12/100 (12%)

Query: 48  ELVDGLDMEDYPIVKEGTKIDLTINPFLQSSFNQHDKIHIIIKFPSRKFNIDVDRTDTVR 107
                  M DY I                  F     ++I IK    K+ ++V    TV 
Sbjct: 3   HHHHHHPMSDYDIPTTEN-----------LYFQGAMSLNIHIKSGQDKWEVNVAPESTVL 51

Query: 108 SLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIRE 147
             KE I+  +G P+    L +SG  L D+ + +  Y I++
Sbjct: 52  QFKEAINKANGIPVANQRLIYSGKILKDD-QTVESYHIQD 90

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 18/65 (27%), Positives = 29/65 (44%)

Query: 1  MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPI 60
          + I I +   ++ + V  +  VL+ K  I +   IP  +Q L  SG  L D   +E Y I
Sbjct: 29 LNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHI 88

Query: 61 VKEGT 65
              +
Sbjct: 89 QDGHS 93

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score = 54.3 bits (131), Expect = 3e-10
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 6/83 (7%)

Query: 85  IHIIIKFP-SRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEY 143
           I + +K P    +   ++    +  LK++I    G P K+  L F G  L D    L  Y
Sbjct: 8   IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDW-LGLGIY 66

Query: 144 GIREFSEIIVFLKTMNRLRDNPP 166
           GI++   +I+      +    P 
Sbjct: 67  GIQDSDTLILSK----KKGSGPS 85

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 15/58 (25%), Positives = 24/58 (41%)

Query: 8  NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGT 65
          +G  +   +     +L +K++IE    +P   Q L   G  L D L +  Y I    T
Sbjct: 16 DGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDT 73

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score = 54.3 bits (131), Expect = 4e-10
 Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 6/79 (7%)

Query: 85  IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEY 143
           + I +K    ++  ID++ TD V  +KE++   +G P ++  L +SG +++DE +  ++Y
Sbjct: 13  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDE-KTAADY 71

Query: 144 GIREFSEIIVFLKTMNRLR 162
            I   S + + L    RLR
Sbjct: 72  KILGGSVLHLVL----RLR 86

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 9  GHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGT 65
          G E  +++   + V  IK ++E+   IP   Q L  SG ++ D     DY I+    
Sbjct: 22 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSV 78

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score = 54.4 bits (131), Expect = 4e-10
 Identities = 13/78 (16%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 85  IHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYG 144
           + + ++        +V   +TV  +K  +  ++G   +  ++  +G  L+DE   L + G
Sbjct: 20  MQLFVRA-QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDE-ATLGQCG 77

Query: 145 IREFSEIIVFLKTMNRLR 162
           +   + + V      R+ 
Sbjct: 78  VEALTTLEVAG----RML 91

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score = 43.2 bits (102), Expect = 4e-06
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 4  IIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKE 63
          + V        EV  QE V +IK  +  +  I    Q + ++G  L D   +    +   
Sbjct: 22 LFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEAL 81

Query: 64 GTKIDLTI 71
           T +++  
Sbjct: 82 TT-LEVAG 88

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189

 Score = 56.1 bits (135), Expect = 6e-10
 Identities = 24/139 (17%), Positives = 53/139 (38%), Gaps = 18/139 (12%)

Query: 24  EIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPFLQSSFNQHD 83
             + K+            +  +         +     +             +  + + + 
Sbjct: 59  NREGKLPGKSGRTWREADINYTSGFRNSDRILYSSDWL-------------IYKTTDHYG 105

Query: 84  KIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEY 143
               +     +   ++V+ +DT+ ++K KI   +G P  +  L F+G +L+D  R LS+Y
Sbjct: 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDY 164

Query: 144 GIREFSEIIVFLKTMNRLR 162
            I++ S + + L    RLR
Sbjct: 165 NIQKESTLHLVL----RLR 179

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189

 Score = 38.8 bits (90), Expect = 5e-04
 Identities = 18/139 (12%), Positives = 50/139 (35%), Gaps = 19/139 (13%)

Query: 104 DTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRD 163
           D   + + K+    G   +   + ++    + +           +S   +  KT +    
Sbjct: 55  DIFSNREGKLPGKSGRTWREADINYTSGFRNSDRI--------LYSSDWLIYKTTDHYGG 106

Query: 164 NPPIRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIM 223
              ++ L+ K  T           LE++ S T+  ++  +   + +P +    I   + +
Sbjct: 107 QIFVKTLTGKTIT-----------LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 155

Query: 224 RDNCSLRWHGVEYGDILYV 242
            D  +L  + ++    L++
Sbjct: 156 EDGRTLSDYNIQKESTLHL 174

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score = 53.4 bits (129), Expect = 7e-10
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 84  KIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEY 143
            ++I IK    K+ ++V    TV   KE I+  +G P+    L +SG  L D+ + +  Y
Sbjct: 4   SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDD-QTVESY 62

Query: 144 GIRE 147
            I++
Sbjct: 63  HIQD 66

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score = 41.8 bits (99), Expect = 8e-06
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 1  MRIII--VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDY 58
          M + I   +   ++ + V  +  VL+ K  I +   IP  +Q L  SG  L D   +E Y
Sbjct: 3  MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 62

Query: 59 PIVKEGT 65
           I    +
Sbjct: 63 HIQDGHS 69

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score = 53.5 bits (129), Expect = 7e-10
 Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 85  IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEY 143
           + + +K    R+ ++ V   + V +LK+ +      P+++  L F G  L D  + LS+Y
Sbjct: 8   MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADG-KRLSDY 66

Query: 144 GIREFSEIIVFLKTM 158
            I   S++ + +K +
Sbjct: 67  SIGPNSKLNLVVKPL 81

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 1  MRIII-VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYP 59
          M++ +    G E  L+V   E V  +K+ + +  N+P   Q L   G  L DG  + DY 
Sbjct: 8  MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 67

Query: 60 IVKEGT 65
          I     
Sbjct: 68 IGPNSK 73

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score = 53.5 bits (129), Expect = 7e-10
 Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 6/79 (7%)

Query: 85  IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEY 143
           + I++K    R   ++V+ +DT+ ++K KI   +G P  +  L F+G +L+D  R LS+Y
Sbjct: 4   MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDY 62

Query: 144 GIREFSEIIVFLKTMNRLR 162
            I   S + + L    +LR
Sbjct: 63  NIHNHSALYLLL----KLR 77

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 1  MRIII-VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYP 59
          MRI++    G   +LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY 
Sbjct: 4  MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63

Query: 60 IVKEGT 65
          I     
Sbjct: 64 IHNHSA 69

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score = 57.3 bits (137), Expect = 9e-10
 Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 5/119 (4%)

Query: 83  DKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGT---PIKRMLLFFSGIELDDEFR 138
             + I +K    + F I ++  +TV+ LKEKI    G    P+    L ++G  L D+  
Sbjct: 6   SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDD-V 64

Query: 139 NLSEYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASIPLEMQDSSTVN 197
            + +Y I E + ++V +      +        S      SS     +    M       
Sbjct: 65  PIRDYRIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAA 123

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score = 43.1 bits (100), Expect = 4e-05
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 1  MRIII-VANGHEFVLEVGLQEPVLEIKRKIEQIF---NIPATSQTLAVSGWELVDGLDME 56
          + I +       F + +   E V  +K KIE        P   Q L  +G  L D + + 
Sbjct: 8  VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 67

Query: 57 DYPIVKEGT 65
          DY I ++  
Sbjct: 68 DYRIDEKNF 76

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score = 53.0 bits (128), Expect = 1e-09
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 83  DKIHIIIKFP-SRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLS 141
           D + +++K   S+     V     V+  KE I      P ++  L + G  L D+ + L 
Sbjct: 4   DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDD-KKLQ 62

Query: 142 EYGIRE 147
           EY +  
Sbjct: 63  EYNVGG 68

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score = 40.3 bits (95), Expect = 4e-05
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 1  MRIII-VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYP 59
          + +++   +       VG Q  V E K  I    +IP+  Q L   G  L D   +++Y 
Sbjct: 6  LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 65

Query: 60 IVKE 63
          +  +
Sbjct: 66 VGGK 69

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score = 54.1 bits (130), Expect = 1e-09
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 1/84 (1%)

Query: 83  DKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSE 142
             I + +K P  K    V    +V+  KE I     +   +++L F+G  L D+   L +
Sbjct: 31  KIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQ-DTLIQ 89

Query: 143 YGIREFSEIIVFLKTMNRLRDNPP 166
           +GI +   + + +K          
Sbjct: 90  HGIHDGLTVHLVIKRDPNSSSVDK 113

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score = 40.6 bits (95), Expect = 6e-05
 Identities = 11/65 (16%), Positives = 21/65 (32%)

Query: 1  MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPI 60
          +++ +     +    V     V + K  I + F        L  +G  L D   +  + I
Sbjct: 33 IKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGI 92

Query: 61 VKEGT 65
              T
Sbjct: 93 HDGLT 97

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score = 52.7 bits (127), Expect = 1e-09
 Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 6/85 (7%)

Query: 79  FNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEF 137
            +    + + IK    + F ++++ +DT+ +LK KI   +G P  +  L F+G +L+D  
Sbjct: 4   HHHLQGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDG- 62

Query: 138 RNLSEYGIREFSEIIVFLKTMNRLR 162
           R LS+Y I++ S + + L    RLR
Sbjct: 63  RTLSDYNIQKESTLHLVL----RLR 83

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score = 42.3 bits (100), Expect = 7e-06
 Identities = 20/57 (35%), Positives = 29/57 (50%)

Query: 9  GHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGT 65
          G  F +E+   + +  +K KI+    IP   Q L  +G +L DG  + DY I KE T
Sbjct: 19 GKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 75

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 75  LQSSFNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIEL 133
             ++  + D + +++K   S+     V     V+  KE I      P ++  L + G  L
Sbjct: 8   TSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVL 67

Query: 134 DDEFRNLSEYGIRE 147
            D+ + L EY +  
Sbjct: 68  QDD-KKLQEYNVGG 80

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score = 40.0 bits (94), Expect = 5e-05
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 1  MRIII-VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYP 59
          + +++   +       VG Q  V E K  I    +IP+  Q L   G  L D   +++Y 
Sbjct: 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 77

Query: 60 IVKE 63
          +  +
Sbjct: 78 VGGK 81

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 52.7 bits (126), Expect = 2e-09
 Identities = 12/73 (16%), Positives = 30/73 (41%)

Query: 94  RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIV 153
             F++ V+    + + +    +  G P +   + +    L D+  +L  YG+++   +++
Sbjct: 22  VTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVL 81

Query: 154 FLKTMNRLRDNPP 166
             K    LR    
Sbjct: 82  LQKDNVGLRTPGR 94

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 37.7 bits (87), Expect = 4e-04
 Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 7/75 (9%)

Query: 1  MRIIIV-----ANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVD-GLD 54
          M I +           F L+V     +   +   E    +PA    +      L D    
Sbjct: 8  MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCS 67

Query: 55 MEDYPIVKEGTKIDL 69
          +  Y + K+G  + L
Sbjct: 68 LGSYGL-KDGDMVVL 81

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score = 52.2 bits (126), Expect = 2e-09
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 85  IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGT---PIKRMLLFFSGIELDDEFRNL 140
           + I +K    + F I ++  +TV+ LKEKI    G    P+    L ++G  L D+   +
Sbjct: 6   VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDD-VPI 64

Query: 141 SEYGIREFSEIIVFLK 156
            +Y I E + ++V + 
Sbjct: 65  RDYRIDEKNFVVVMVT 80

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score = 39.9 bits (94), Expect = 4e-05
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 1  MRIII-VANGHEFVLEVGLQEPVLEIKRKIEQI---FNIPATSQTLAVSGWELVDGLDME 56
          + I +       F + +   E V  +K KIE        P   Q L  +G  L D + + 
Sbjct: 6  VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 65

Query: 57 DYPIVKEGT 65
          DY I ++  
Sbjct: 66 DYRIDEKNF 74

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score = 52.3 bits (126), Expect = 2e-09
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)

Query: 85  IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGT---PIKRMLLFFSGIELDDEFRNL 140
           + + +K    + F ID+D  +TV++LKEKI    G    P+    L ++G  L+D+   L
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDD-TAL 59

Query: 141 SEYGIREFSEIIVFLK 156
            EY I E + ++V + 
Sbjct: 60  KEYKIDEKNFVVVMVT 75

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 1  MRIII-VANGHEFVLEVGLQEPVLEIKRKIEQ---IFNIPATSQTLAVSGWELVDGLDME 56
          M++ +       F +++  +E V  +K KIE        P   Q L  +G  L D   ++
Sbjct: 1  MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 57 DYPIVKEGT 65
          +Y I ++  
Sbjct: 61 EYKIDEKNF 69

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score = 52.1 bits (125), Expect = 3e-09
 Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 6/86 (6%)

Query: 85  IHIIIKFPS-RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEY 143
           + I +K  + +   ++V+ +DT+ ++K KI   +G P  +  L F+G +L+D  R LS+Y
Sbjct: 2   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDY 60

Query: 144 GIREFSEIIVFLKTMNRLRDNPPIRR 169
            I++ S + + L    RLR    +R 
Sbjct: 61  NIQKESTLHLVL----RLRGYADLRE 82

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 21/57 (36%), Positives = 28/57 (49%)

Query: 9  GHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGT 65
          G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY I KE T
Sbjct: 11 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 67

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score = 52.5 bits (126), Expect = 3e-09
 Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 6/84 (7%)

Query: 80  NQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFR 138
           + H +  I  K    +   ++V+ +DT+ ++K KI   +G P  +  L ++G +L+D  R
Sbjct: 5   HHHGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDG-R 63

Query: 139 NLSEYGIREFSEIIVFLKTMNRLR 162
            LS+Y I+  S + + L    RLR
Sbjct: 64  TLSDYNIQRESTLHLVL----RLR 83

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score = 40.2 bits (94), Expect = 7e-05
 Identities = 20/57 (35%), Positives = 28/57 (49%)

Query: 9  GHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGT 65
          G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY I +E T
Sbjct: 19 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQREST 75

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score = 51.6 bits (124), Expect = 3e-09
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 6/82 (7%)

Query: 82  HDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNL 140
            + + I+++    R    +V  T TV  LK+++  ++G       L F G  L+D+   L
Sbjct: 2   DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQ-LPL 60

Query: 141 SEYGIREFSEIIVFLKTMNRLR 162
            EYG++  S + + L    RLR
Sbjct: 61  GEYGLKPLSTVFMNL----RLR 78

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 13/58 (22%), Positives = 23/58 (39%)

Query: 8  NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGT 65
           G     EV L + V  +K+++  +  +      L   G  L D L + +Y +    T
Sbjct: 13 KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLST 70

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score = 50.4 bits (121), Expect = 8e-09
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 87  IIIKFPS-RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGI 145
           + ++F S   F ++VD   ++  LKE +    G P  ++ + F+G EL +    +    +
Sbjct: 3   VFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNH-LTVQNCDL 61

Query: 146 RE 147
            +
Sbjct: 62  EQ 63

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score = 42.7 bits (101), Expect = 5e-06
 Identities = 11/58 (18%), Positives = 29/58 (50%)

Query: 8  NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGT 65
          + + F +EV     +L++K  + +   +PA    +  +G EL + L +++  + ++  
Sbjct: 9  SSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSI 66

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score = 50.6 bits (121), Expect = 1e-08
 Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 6/79 (7%)

Query: 85  IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEY 143
           + I +K    +   ++V+ +DT+ ++K KI   +G P  +  L F+G +L+D  R LS+Y
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDY 59

Query: 144 GIREFSEIIVFLKTMNRLR 162
            I++ S + + L    RLR
Sbjct: 60  NIQKESTLHLVL----RLR 74

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 21/57 (36%), Positives = 28/57 (49%)

Query: 9  GHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGT 65
          G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY I KE T
Sbjct: 10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score = 50.6 bits (121), Expect = 1e-08
 Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 13/109 (11%)

Query: 55  MEDYPIVKEGTKIDLTINPFLQSSFNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKI 113
           +E   +  + T  D  I      +      + I +K    +   ++V+ +DT+ ++K KI
Sbjct: 13  IEGDELYID-TNNDGWIEGDELLA------MQIFVKTLTGKTITLEVEPSDTIENVKAKI 65

Query: 114 HIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLR 162
              +G P  +  L F+G +L+D  R LS+Y I++ S + + L    RLR
Sbjct: 66  QDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVL----RLR 109

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score = 40.6 bits (95), Expect = 5e-05
 Identities = 21/57 (36%), Positives = 28/57 (49%)

Query: 9   GHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGT 65
           G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY I KE T
Sbjct: 45  GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 101

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score = 49.6 bits (119), Expect = 1e-08
 Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 6/79 (7%)

Query: 85  IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEY 143
           + I +K    +   ++V+ +DT+ ++K KI   +G P  +  L F+G +L+D  R LS+Y
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDY 59

Query: 144 GIREFSEIIVFLKTMNRLR 162
            I+  S + + L    RLR
Sbjct: 60  NIQRESTLHLVL----RLR 74

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 20/57 (35%), Positives = 28/57 (49%)

Query: 9  GHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGT 65
          G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY I +E T
Sbjct: 10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQREST 66

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 5/78 (6%)

Query: 85  IHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYG 144
                K   +     +  TD V  +K KIH   G P  +  L + GI + D   +L+ Y 
Sbjct: 37  DKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDS-NSLAYYN 95

Query: 145 IREFSEIIVFLKTMNRLR 162
           +   + I + L    + R
Sbjct: 96  MASGAVIHLAL----KER 109

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 16/58 (27%), Positives = 23/58 (39%)

Query: 8   NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGT 65
           NG   V  + L + V  IK KI +   +PA  Q L   G  + D   +  Y +     
Sbjct: 44  NGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAV 101

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score = 49.3 bits (118), Expect = 2e-08
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 6/82 (7%)

Query: 82  HDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNL 140
            + + I+++    R    +V  T TV  LK+++  ++G       L F G  L+D+   L
Sbjct: 2   DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQ-LPL 60

Query: 141 SEYGIREFSEIIVFLKTMNRLR 162
            EYG++  S + + L    RLR
Sbjct: 61  GEYGLKPLSTVFMNL----RLR 78

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 13/58 (22%), Positives = 23/58 (39%)

Query: 8  NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGT 65
           G     EV L + V  +K+++  +  +      L   G  L D L + +Y +    T
Sbjct: 13 KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLST 70

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Length = 122

 Score = 50.3 bits (120), Expect = 3e-08
 Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 6/76 (7%)

Query: 84  KIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFF------SGIELDDEF 137
            + I                 ++  LK+K+ ++ GT +  M +           EL D  
Sbjct: 8   DLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGA 67

Query: 138 RNLSEYGIREFSEIIV 153
           ++L + G+R+   I  
Sbjct: 68  KSLKDLGVRDGYRIHA 83

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Length = 122

 Score = 44.1 bits (104), Expect = 4e-06
 Identities = 22/124 (17%), Positives = 45/124 (36%), Gaps = 22/124 (17%)

Query: 2   RIIIVANGHEFVLE--VGLQEPVLEIKRKIEQIFNIPATSQTL-------AVSGWELVDG 52
            + I  N  +F +E        + ++K+K+E +      S  +        + G      
Sbjct: 8   DLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGA 67

Query: 53  LDMEDYPIVKEGTKIDLTINPFLQSSFNQHDKIHIIIKFPSRKFNIDVD----RTDTVRS 108
             ++D  + ++G +I           F     +         K+ +  D    RTD+VR+
Sbjct: 68  KSLKDLGV-RDGYRIHAVDVTGGNEDFKDESMV--------EKYEMSDDTYGKRTDSVRA 118

Query: 109 LKEK 112
            K+K
Sbjct: 119 WKKK 122

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score = 49.3 bits (117), Expect = 5e-08
 Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 85  IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEY 143
           + I +K    +   ++V+ +DT+ ++K KI   +G P  +  L F+G +L+D  R LS+Y
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDY 59

Query: 144 GIREFSEIIVFLKTMNR 160
            I++ S + + L+    
Sbjct: 60  NIQKESTLHLVLRLRGG 76

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score = 37.3 bits (86), Expect = 9e-04
 Identities = 29/115 (25%), Positives = 41/115 (35%), Gaps = 11/115 (9%)

Query: 9   GHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKI- 67
           G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY I KE T   
Sbjct: 10  GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 69

Query: 68  --------DLTINPFLQSSFNQHDKI--HIIIKFPSRKFNIDVDRTDTVRSLKEK 112
                          L S +N    +      + P R  N    +      L+ K
Sbjct: 70  VLRLRGGIIEPSLKALASKYNCDKSVCRKCYARLPPRATNCRKRKCGHTNQLRPK 124

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 48.3 bits (115), Expect = 6e-08
 Identities = 9/66 (13%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 83  DKIHIIIKFPSRKF-NIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLS 141
               + +K+   KF  ++++  +     K ++  + G    R  +   G  L D+  +  
Sbjct: 6   SGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD--DWG 63

Query: 142 EYGIRE 147
              ++ 
Sbjct: 64  NIKMKN 69

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 1  MRIIIVANGHEF-VLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYP 59
            + +     +F  +E+   EP +  K ++  +  +    Q + V G  L D  D  +  
Sbjct: 8  YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIK 66

Query: 60 IVKEGTKI 67
          + K G  +
Sbjct: 67 M-KNGMTV 73

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score = 48.2 bits (115), Expect = 6e-08
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 99  DVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTM 158
           DV R  T+  L+E++  +     +   LF+ G +L++    L +Y +     I + +   
Sbjct: 25  DVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENG-YTLFDYDVGLNDIIQLLV--- 80

Query: 159 NRLR 162
            R  
Sbjct: 81  -RPD 83

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 10/53 (18%), Positives = 25/53 (47%)

Query: 13 VLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGT 65
          + +V  +  + E++ ++  +F++    Q L   G +L +G  + DY +     
Sbjct: 23 IEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDI 75

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score = 47.3 bits (113), Expect = 9e-08
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 98  IDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK 156
             + R   V  L+ KI  +         LF+ G +++D    L +Y +R    I + ++
Sbjct: 19  DSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDG-HTLFDYEVRLNDTIQLLVR 76

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score = 39.3 bits (92), Expect = 8e-05
 Identities = 15/55 (27%), Positives = 27/55 (49%)

Query: 11 EFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGT 65
            V  +     V E++RKI+++F++    Q L   G ++ DG  + DY +    T
Sbjct: 16 HTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDT 70

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score = 49.7 bits (118), Expect = 1e-07
 Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 87  IIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDE 136
           + +K          +++  +V  LK +I    G  I  M L  +G    + 
Sbjct: 3   VQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNT 53

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score = 41.6 bits (97), Expect = 6e-05
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 1  MRIII-VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDY 58
          M++ +    G   +  +     VL++K +I Q         TL  +G+   +   + D 
Sbjct: 1  MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVTDD 59

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169

 Score = 47.6 bits (113), Expect = 5e-07
 Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 10/137 (7%)

Query: 9   GHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKID 68
           G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY I KE     
Sbjct: 10  GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES---- 65

Query: 69  LTINPFLQSSFNQHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFF 128
            T++  L+      + I  +        ++ +     +   +  I +    P+    L F
Sbjct: 66  -TLHLVLRLRGGGGETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVD---LTF 121

Query: 129 SGIELDDEF--RNLSEY 143
               L D     +LS+ 
Sbjct: 122 GAKYLLDIIKGSSLSDR 138

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score = 46.0 bits (109), Expect = 7e-07
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 6/77 (7%)

Query: 85  IHIIIKFPS----RKFNIDVD-RTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRN 139
             I +  P+    +   I V   ++ V SLKEKI      P  +  L      L D   +
Sbjct: 28  ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDN-MS 86

Query: 140 LSEYGIREFSEIIVFLK 156
           L+ Y +     + + L+
Sbjct: 87  LAHYNVGAGEILTLSLR 103

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 7  ANGHEFVLEVG-LQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGT 65
           +G    + V  L E V  +K KI     IPA  Q L+     L D + +  Y +     
Sbjct: 38 NDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEI 97

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Length = 307

 Score = 46.7 bits (110), Expect = 3e-06
 Identities = 26/138 (18%), Positives = 56/138 (40%), Gaps = 7/138 (5%)

Query: 25  IKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPFLQSSFNQHDK 84
           ++       N P     + +     +               +  + +  F+ ++      
Sbjct: 177 VQLADHYQQNTPIGDGPVLLPDNHYLS--TQSALSKDPNEKRDHMVLLEFVTAAGITGSM 234

Query: 85  IHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYG 144
              +     +   ++V+ +DT+ ++K KI   +G P  +  L F+G +L+D  R LS+Y 
Sbjct: 235 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYN 293

Query: 145 IREFSEIIVFLKTMNRLR 162
           I++ S + + L    RLR
Sbjct: 294 IQKESTLHLVL----RLR 307

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Length = 307

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 21/57 (36%), Positives = 28/57 (49%)

Query: 9   GHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGT 65
           G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY I KE T
Sbjct: 243 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 299

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 97

 Score = 42.6 bits (100), Expect = 7e-06
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 6/67 (8%)

Query: 93  SRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFF------SGIELDDEFRNLSEYGIR 146
           S   +       +V ++KEK+    GT +  M L            L D+ R L  +   
Sbjct: 26  SFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPF 85

Query: 147 EFSEIIV 153
           +   + +
Sbjct: 86  DGFRLHI 92

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Length = 118

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 98  IDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGI 145
            D   + TV  LK  +  I   P +   L+     LDD  + L E G 
Sbjct: 16  TDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDG-KTLGECGF 62

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 93

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 85  IHIIIKFPSRK---FNIDVDRTDTVRSLKEKI--HIIDGTPIKRMLLFFSGIELDDEFRN 139
           + +++K P+++     +  DR  +V  LK  +     +    +   L +SG  L D  + 
Sbjct: 8   VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDH-QC 66

Query: 140 LSEYGIRE 147
           L +   ++
Sbjct: 67  LRDLLPKQ 74

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Length = 90

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 13/69 (18%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 83  DKIHIIIKFPSRKFNID-VDRTDTVRSLKEKIHIIDGTPIKRMLLF---FSGIELDDEFR 138
             + II+K+  +++++  +   DTV  LK+ +  + G   +R  L      G   +++ +
Sbjct: 6   SGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVK 65

Query: 139 NLSEYGIRE 147
            L    ++ 
Sbjct: 66  -LGALKLKP 73

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 93  SRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSG------IELDDEFRNLSEYGIR 146
           S +      R+ T+   K K+ ++ G+P   M L   G       +LD E   L  Y + 
Sbjct: 18  SFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVD 77

Query: 147 EFSEIIV 153
           +   I V
Sbjct: 78  DGCRIHV 84

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 80  NQHDKIHIIIKFPS-RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFR 138
           +    I++ +KF +  +        DTV +LK K      + +K   L + G  L D  R
Sbjct: 3   SGSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQESQMK---LIYQGRLLQDPAR 59

Query: 139 NLSEYGIREFSEIIVFLKT 157
            LS   I     I      
Sbjct: 60  TLSSLNITNNCVIHCHRSP 78

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 40/273 (14%), Positives = 88/273 (32%), Gaps = 64/273 (23%)

Query: 4   IIVANGHEFVLEVGLQE------PVLEIKRKIEQIFNIPATSQTLAVSGWEL-------- 49
           I+      FV     ++       +L  K +I+ I              W L        
Sbjct: 21  ILSVFEDAFVDNFDCKDVQDMPKSILS-KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79

Query: 50  ---VDGLDMEDYPIVKEGTKIDLTINPFLQSSFN-QHDKIH-IIIKFPSRKFNIDVDRTD 104
              V+ +   +Y  +    K +      +   +  Q D+++     F   K+N  V R  
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA--KYN--VSRLQ 135

Query: 105 TVRSLKEKIHIIDGTPIKRMLLFFSG----------IELDDEFRNLSEYGIREFSEIIVF 154
               L++ +  +   P K +L+   G          +++         Y ++   +  +F
Sbjct: 136 PYLKLRQALLELR--PAKNVLID--GVLGSGKTWVALDV------CLSYKVQCKMDFKIF 185

Query: 155 -LKTMNRLRDNP---PIRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILP 210
            L   N          +++L +++  + +  +  S  ++++  S   ELR L L SK   
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYE 244

Query: 211 REDYIFIHKQRIMRDNCSLRWHGVEYGDILYVF 243
               +      ++ +        V+       F
Sbjct: 245 N-CLL------VLLN--------VQNAKAWNAF 262

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 92

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 85  IHIIIKFPSRKFNIDVDRTD-----TVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRN 139
           + + +   + K ++ V          V+ L + +  + G P     L F G  L +    
Sbjct: 8   LTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETP 67

Query: 140 LSEYGIREFSEIIV 153
           LS  GI++   +++
Sbjct: 68  LSALGIQDGCRVML 81

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster} Length = 95

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 100 VDRTDTVRSLKEKIHIIDGTPIKRM-LLFFSG----IELDDEFRNLSEYGIREFSEIIV 153
           + +  TV  LK K+ I+ G     M +  F G      +D+    L  Y   +   + V
Sbjct: 34  LAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV 92

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Length = 99

 Score = 37.6 bits (87), Expect = 5e-04
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 85  IHIIIKFPSRK---FNIDVDRTDTVRSLKEKI--HIIDGTPIKRMLLFFSGIELDDE 136
           + +IIK P++K     I      TV  LK  +          K   L +SG  L D 
Sbjct: 24  VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDH 80

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	252
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	100.0
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	100.0
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	100.0
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	100.0
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	100.0
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	100.0
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.8
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.79
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.79
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.79
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.78
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.76
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.75
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.75
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.75
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.75
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.75
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.74
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.74
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.74
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.74
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.74
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.73
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.73
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.73
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.73
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.73
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.73
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.73
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.73
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.73
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.73
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.73
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.73
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.73
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.73
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.72
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.72
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.72
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.72
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.72
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.71
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.71
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.71
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.71
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.71
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.71
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.71
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.71
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.7
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.7
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.7
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.7
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.7
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.7
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.7
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.7
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.69
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.69
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.69
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.69
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.69
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.69
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.69
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.69
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.69
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.69
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.69
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.69
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.69
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.69
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.68
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.68
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.68
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.68
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.68
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.68
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.67
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.67
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.67
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.67
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.67
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.67
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.67
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.67
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.66
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.66
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.66
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.66
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.66
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.66
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.66
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.66
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.66
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.66
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.66
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.65
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.65
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.65
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	99.65
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	99.46
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.65
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.65
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.65
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.64
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.64
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.64
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.64
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	99.44
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	99.63
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.63
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.63
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	99.63
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.63
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.62
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.62
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.62
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.62
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.62
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.61
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	99.61
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.61
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.61
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.61
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.6
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	99.6
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.6
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.6
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	99.6
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.6
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.59
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.58
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.58
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.57
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.57
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.57
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.56
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.56
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.56
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.55
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.55
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.55
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.55
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.55
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.55
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.54
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.54
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.53
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.52
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	99.5
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	99.49
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.49
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	99.49
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	99.47
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.44
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	99.44
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.43
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	99.42
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	99.42
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	99.42
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	99.41
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	99.4
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.39
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.39
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	99.38
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	99.38
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.37
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.34
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	99.32
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	99.29
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	99.29
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	99.26
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	99.26
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	99.23
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	99.22
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	99.21
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	99.19
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	99.18
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	99.15
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	99.15
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	99.14
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	99.12
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	99.1
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	99.09
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	99.08
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	99.08
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	98.72
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	98.71
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	98.7
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	98.69
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	98.67
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	98.67
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	98.61
2pjh_A	80	Protein NPL4, nuclear protein localization protein	98.43
2pjh_A	80	Protein NPL4, nuclear protein localization protein	98.34
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	98.33
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	98.3
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	98.25
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	98.21
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	98.2
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	98.17
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	98.15
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	98.11
2ylm_A	530	Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70	98.0
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	97.87
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	97.87
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	97.82
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	97.8
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	97.79
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	97.77
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	97.76
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	97.58
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	97.56
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	97.55
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	97.52
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	97.43
2ylm_A	530	Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70	97.43
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	97.33
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	97.22
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	97.1
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	96.93
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	96.81
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	96.73
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	96.57
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	96.5
2l32_A	74	Small archaeal modifier protein 2; protein BIN; NM	96.16
1ryj_A	70	Unknown; beta/alpha protein, structural genomics,	96.12
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	96.1
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	95.92
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	95.91
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	95.59
1tyg_B	87	YJBS; alpha beta barrel, protein-protein complex,	95.54
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	95.35
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	95.33
4e74_A	117	Plexin-A4; RBD, structural genomics, structural ge	95.25
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	95.11
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	95.1
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	94.96
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	94.93
2kl0_A	73	Putative thiamin biosynthesis THis; structural gen	94.81
2juo_A	89	GA-binding protein alpha chain; OST, ubiquitin, tr	94.6
2daj_A	91	KIAA0977 protein, COBL-like 1; ubiquitin-like doma	94.43
3kuz_A	126	Plexin-C1; structural genomics, structural genomic	94.42
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	94.38
2daj_A	91	KIAA0977 protein, COBL-like 1; ubiquitin-like doma	94.29
2juo_A	89	GA-binding protein alpha chain; OST, ubiquitin, tr	94.29
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	94.18
2k5p_A	78	THis protein, thiamine-biosynthesis protein; NESG,	94.15
2cu3_A	64	Unknown function protein; thermus thermophilus HB8	93.94
1ryj_A	70	Unknown; beta/alpha protein, structural genomics,	93.53
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	93.51
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	93.26
4e74_A	117	Plexin-A4; RBD, structural genomics, structural ge	93.17
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	93.02
3rpf_C	74	Molybdopterin converting factor, subunit 1 (MOAD);	92.67
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	92.6
1vjk_A	98	Molybdopterin converting factor, subunit 1; struct	92.19
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	92.03
3kuz_A	126	Plexin-C1; structural genomics, structural genomic	91.86
1f0z_A	66	THis protein; ubiquitin fold, transport protein; N	91.86
2l32_A	74	Small archaeal modifier protein 2; protein BIN; NM	91.22
2kvr_A	130	Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubi	90.74
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	90.71
1tyg_B	87	YJBS; alpha beta barrel, protein-protein complex,	89.98
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	89.71
1fm0_D	81	Molybdopterin convertin factor, subunit 1; molybde	89.69
1rws_A	77	Hypothetical protein PF1061; residual dipolar coup	89.38
2kvr_A	130	Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubi	89.24
1vjk_A	98	Molybdopterin converting factor, subunit 1; struct	89.0
2q5w_D	77	Molybdopterin converting factor, subunit 1; MOCO,	88.87
2qjl_A	99	URM1, ubiquitin-related modifier 1; ubiquitin-like	88.68
1ip9_A	85	BEM1 protein; ubiquitin alpha/beta roll, signaling	88.58
3po0_A	89	Small archaeal modifier protein 1; ubiquitin-like	88.29
3hm6_X	644	Plexin-B1; structural genomics consortium, SGC, me	88.04
2cu3_A	64	Unknown function protein; thermus thermophilus HB8	87.05
1wgk_A	114	Riken cDNA 2900073H19 protein; THis domain, ubiqut	86.98
2kl0_A	73	Putative thiamin biosynthesis THis; structural gen	86.81
3dwg_C	93	9.5 kDa culture filtrate antigen CFP10A; sulfur ca	86.73
3ig3_A	627	Plxna3 protein; plexin intracellular GAP RBD inact	86.22
2g1e_A	90	Hypothetical protein TA0895; MOAD, molybdopterin,	85.93
2k5p_A	78	THis protein, thiamine-biosynthesis protein; NESG,	84.03
3rpf_C	74	Molybdopterin converting factor, subunit 1 (MOAD);	83.53
1wgk_A	114	Riken cDNA 2900073H19 protein; THis domain, ubiqut	82.34
3ig3_A	627	Plxna3 protein; plexin intracellular GAP RBD inact	81.77
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	81.56
1f0z_A	66	THis protein; ubiquitin fold, transport protein; N	80.54

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=100.00  E-value=5.3e-36  Score=237.19  Aligned_cols=152  Identities=26%  Similarity=0.396  Sum_probs=139.7

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEE-E-cCeecCCCCCccccccccCCcEEEEEecCCCCc
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLA-V-SGWELVDGLDMEDYPIVKEGTKIDLTINPFLQS   77 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~-~-~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~~~~   77 (252)
                      |+|+|+. +|++++++|++++||++||++|++.+|+|+++|+|+ | +|+.|+|+.+|++|+|.++++ |+|+++.    
T Consensus         3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~-l~l~~~~----   77 (159)
T 3rt3_B            3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGST-VLLVVDK----   77 (159)
T ss_dssp             CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCE-EEEEECC----
T ss_pred             eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCE-EEEEccC----
Confidence            8899975 999999999999999999999999999999999999 9 799999999999999997777 9998752    


Q ss_pred             cCCcCCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           78 SFNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        78 ~~~~~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                         .++.|+|+|+ .+|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|++ 
T Consensus        78 ---~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~-d~~tL~~y~i~~g~~l~l~~-  152 (159)
T 3rt3_B           78 ---SDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLE-DQLPLGEYGLKPLSTVFMNL-  152 (159)
T ss_dssp             ---CCCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTCCTTCEEEEEE-
T ss_pred             ---CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecC-CCCCHHHcCCCCCCEEEEEE-
Confidence               2457999999 58999999999999999999999999999999999999999996 89999999999999999999 


Q ss_pred             eccccCCCC
Q 045158          157 TMNRLRDNP  165 (252)
Q Consensus       157 ~~~~~~~~~  165 (252)
                         |++||+
T Consensus       153 ---rl~GG~  158 (159)
T 3rt3_B          153 ---RLRGGG  158 (159)
T ss_dssp             ---CCC---
T ss_pred             ---ecCCCC
Confidence               787763

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=100.00  E-value=2.9e-35  Score=235.90  Aligned_cols=150  Identities=32%  Similarity=0.553  Sum_probs=137.5

Q ss_pred             CEEEEE-eCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCCCCccC
Q 045158            1 MRIIIV-ANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPFLQSSF   79 (252)
Q Consensus         1 M~v~v~-~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~~~~~~   79 (252)
                      |+|+|+ ++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++       
T Consensus        21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~-l~l~~~-------   92 (172)
T 3u30_A           21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR-------   92 (172)
T ss_dssp             EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCE-EEEEEC-------
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccce-eeeeec-------
Confidence            889997 49999999999999999999999999999999999999999999999999999997777 888753       


Q ss_pred             CcCCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeec
Q 045158           80 NQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTM  158 (252)
Q Consensus        80 ~~~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~  158 (252)
                       ..+.|.++|+ .+|+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|||++   
T Consensus        93 -~~gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~-D~~tL~~y~i~~g~tl~l~~---  167 (172)
T 3u30_A           93 -LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL---  167 (172)
T ss_dssp             -CCCCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECC-TTSBSGGGTCCTTCEEEECC---
T ss_pred             -ccccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCC-CCCcHHHhCCCCCCEEEEEE---
Confidence             4567999999 68999999999999999999999999999999999999999996 89999999999999999998   


Q ss_pred             cccCCC
Q 045158          159 NRLRDN  164 (252)
Q Consensus       159 ~~~~~~  164 (252)
                       |++||
T Consensus       168 -rlrgG  172 (172)
T 3u30_A          168 -RLRGG  172 (172)
T ss_dssp             ------
T ss_pred             -ecCCC
Confidence             66664

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=100.00  E-value=4.5e-35  Score=231.81  Aligned_cols=153  Identities=18%  Similarity=0.249  Sum_probs=138.5

Q ss_pred             EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEE-E-CceecccccccccccCCCCCCEEEEEeeecccc
Q 045158           85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF-F-SGIELDDEFRNLSEYGIREFSEIIVFLKTMNRL  161 (252)
Q Consensus        85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~-~-~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~  161 (252)
                      |+|+|+ ++|+++++++++++||++||++|++.+|+|+++|+|+ | +|+.|+ |+.+|++|+|.+|++|+|+++.   .
T Consensus         3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~-d~~tL~~y~i~~~~~l~l~~~~---~   78 (159)
T 3rt3_B            3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQ-DRVPLASQGLGPGSTVLLVVDK---S   78 (159)
T ss_dssp             CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCC-TTSCGGGGTCCTTCEEEEEECC---C
T ss_pred             eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCC-CCCCHHHcCCCCCCEEEEEccC---C
Confidence            899999 6899999999999999999999999999999999999 9 899995 9999999999999999999841   2


Q ss_pred             CCCCccccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEE
Q 045158          162 RDNPPIRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILY  241 (252)
Q Consensus       162 ~~~~~~~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~  241 (252)
                      ++     .|+++|+    ..+|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++||+|+
T Consensus        79 ~~-----~m~i~vk----~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~  149 (159)
T 3rt3_B           79 DE-----PLSILVR----NNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVF  149 (159)
T ss_dssp             CC-----CEEEEEE----CTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEE
T ss_pred             CC-----cEEEEEE----CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEE
Confidence            33     2888775    57899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCeecCCC
Q 045158          242 VFKGTVSRGG  251 (252)
Q Consensus       242 l~~~~~~~~~  251 (252)
                      |+ .++.|||
T Consensus       150 l~-~rl~GG~  158 (159)
T 3rt3_B          150 MN-LRLRGGG  158 (159)
T ss_dssp             EE-ECCC---
T ss_pred             EE-EecCCCC
Confidence            96 4566666

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=100.00  E-value=1e-34  Score=232.70  Aligned_cols=151  Identities=25%  Similarity=0.443  Sum_probs=139.8

Q ss_pred             CcCCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeec
Q 045158           80 NQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTM  158 (252)
Q Consensus        80 ~~~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~  158 (252)
                      .....|+|+|+ ++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|.++++|+|++   
T Consensus        16 ~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~-d~~tL~~~~i~~~~~l~l~~---   91 (172)
T 3u30_A           16 PRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL---   91 (172)
T ss_dssp             ---CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTGGGTCCTTCEEEEEE---
T ss_pred             CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCcccc-ccCCHhHcCCcccceeeeee---
Confidence            45678999999 78999999999999999999999999999999999999999996 89999999999999999999   


Q ss_pred             cccCCCCccccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCC
Q 045158          159 NRLRDNPPIRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGD  238 (252)
Q Consensus       159 ~~~~~~~~~~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gs  238 (252)
                       +++++     +.++|+    .++|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+++|++|+|++|+
T Consensus        92 -~~~gg-----~~i~Vk----~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~  161 (172)
T 3u30_A           92 -RLRGG-----MQIFVK----TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES  161 (172)
T ss_dssp             -CCCCC-----EEEEEE----ESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTC
T ss_pred             -ccccc-----ccceee----cccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCC
Confidence             66665     777775    47899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEec
Q 045158          239 ILYVFK  244 (252)
Q Consensus       239 ti~l~~  244 (252)
                      +|+|+-
T Consensus       162 tl~l~~  167 (172)
T 3u30_A          162 TLHLVL  167 (172)
T ss_dssp             EEEECC
T ss_pred             EEEEEE
Confidence            999963

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=100.00  E-value=2e-33  Score=220.38  Aligned_cols=150  Identities=32%  Similarity=0.557  Sum_probs=139.4

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCCCCccC
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPFLQSSF   79 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~~~~~~   79 (252)
                      |+|+|+. +|+.+++++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ +++..+       
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~-l~l~~~-------   72 (152)
T 3b08_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR-------   72 (152)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCE-EEEEEC-------
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCe-eEEEee-------
Confidence            8999976 8999999999999999999999999999999999999999999999999999997777 888864       


Q ss_pred             CcCCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeec
Q 045158           80 NQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTM  158 (252)
Q Consensus        80 ~~~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~  158 (252)
                       ..+.|+|+|+ ..|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|++   
T Consensus        73 -~~~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~-d~~tL~~~~i~~~~~i~l~~---  147 (152)
T 3b08_A           73 -LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL---  147 (152)
T ss_dssp             -CTTCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEE---
T ss_pred             -cccccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECC-CCCCHHHcCCCCCCEEEEEE---
Confidence             3456999999 58999999999999999999999999999999999999999996 89999999999999999998   


Q ss_pred             cccCCC
Q 045158          159 NRLRDN  164 (252)
Q Consensus       159 ~~~~~~  164 (252)
                       |++||
T Consensus       148 -r~~GG  152 (152)
T 3b08_A          148 -RLRGG  152 (152)
T ss_dssp             -CCCC-
T ss_pred             -ecCCC
Confidence             66664

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=100.00  E-value=5.1e-32  Score=212.32  Aligned_cols=146  Identities=25%  Similarity=0.457  Sum_probs=135.8

Q ss_pred             EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCC
Q 045158           85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRD  163 (252)
Q Consensus        85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~  163 (252)
                      |+|+|+ ..|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+ |+.+|++|+|.+|++|+|+.    +.++
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~-d~~tL~~~~i~~~~~l~l~~----~~~~   75 (152)
T 3b08_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL----RLRG   75 (152)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEE----CCTT
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECc-CcccHHHhccCCCCeeEEEe----eccc
Confidence            689999 57899999999999999999999999999999999999999995 89999999999999999998    4444


Q ss_pred             CCccccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEe
Q 045158          164 NPPIRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVF  243 (252)
Q Consensus       164 ~~~~~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~  243 (252)
                      +     +.++|+    .+.|+++.++|++++||++||++|+++.|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|+
T Consensus        76 ~-----~~i~Vk----~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~  146 (152)
T 3b08_A           76 G-----MQIFVK----TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV  146 (152)
T ss_dssp             C-----EEEEEE----ESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred             c-----cceeee----ecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence            3     777775    4679999999999999999999999999999999999999999999999999999999999997


Q ss_pred             c
Q 045158          244 K  244 (252)
Q Consensus       244 ~  244 (252)
                      .
T Consensus       147 ~  147 (152)
T 3b08_A          147 L  147 (152)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.80  E-value=3.1e-19  Score=126.13  Aligned_cols=76  Identities=16%  Similarity=0.309  Sum_probs=69.0

Q ss_pred             CCcCCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           79 FNQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        79 ~~~~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      .+...+|+|+|+ ..|+++.+++++++||.+||++|+++.|+|+++|+|.|+|+.|+ |+.+|++|+|++|++|+|..
T Consensus        16 ~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~Lk-D~~TL~dY~I~dgstLhL~~   92 (93)
T 3plu_A           16 PRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLK-DHISLEDYEVHDQTNLELYY   92 (93)
T ss_dssp             ----CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEE
T ss_pred             CCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEcc-CcCCHHHcCCCCCCEEEEEe
Confidence            345678999999 68999999999999999999999999999999999999999996 99999999999999999864

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.79  E-value=7.7e-19  Score=122.20  Aligned_cols=72  Identities=26%  Similarity=0.458  Sum_probs=69.1

Q ss_pred             CcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           83 DKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        83 ~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      ..|+|+|+ .+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|++
T Consensus         3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~-d~~tL~~~~i~~~~~l~l~~   75 (79)
T 3phx_B            3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLE-DQLPLGEYGLKPLSTVFMNL   75 (79)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTCCTTCEEEEEE
T ss_pred             CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEE
Confidence            46999999 58999999999999999999999999999999999999999996 88999999999999999998

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.79  E-value=3e-20  Score=138.38  Aligned_cols=107  Identities=26%  Similarity=0.438  Sum_probs=93.5

Q ss_pred             cCCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeecc
Q 045158           81 QHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMN  159 (252)
Q Consensus        81 ~~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~  159 (252)
                      .++.++|+|+ ++|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+ |+.+|++|+|.+|++|+|++    
T Consensus         6 ~~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~ygI~~gstI~l~~----   80 (114)
T 2kdi_A            6 HHGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLE-DGRTLSDYNIQRESTLHLVL----   80 (114)
T ss_dssp             CCCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTTTTTCCSSCEEEEEE----
T ss_pred             cCCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEE----
Confidence            4678999999 68999999999999999999999999999999999999999996 88999999999999999999    


Q ss_pred             ccCCCCccccceeeEEeeeeccCCceEEEEecCCCcHHH
Q 045158          160 RLRDNPPIRRLSFKVQTSSSLLNGASIPLEMQDSSTVNE  198 (252)
Q Consensus       160 ~~~~~~~~~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~  198 (252)
                      |++||     +++++.+. ..+.|++++++|.+++||.+
T Consensus        81 ~~~GG-----~~~~~~~~-~~~~g~~~~~~v~~~~~~~~  113 (114)
T 2kdi_A           81 RLRGG-----SMGGAADE-EELIRKAIELSLKESRNSGG  113 (114)
T ss_dssp             CCCSS-----CCCSSCSS-SHHHHHHHHSSSHHHHHGGG
T ss_pred             EcCCC-----ceeecccc-ccccCceEEEEeccccccCC
Confidence            67777     34555422 24678999999999988853

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.79  E-value=4.4e-19  Score=125.38  Aligned_cols=69  Identities=16%  Similarity=0.290  Sum_probs=65.3

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEE
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLT   70 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~   70 (252)
                      |+|+|+. .|++++++|+|++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|.
T Consensus        22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgst-LhL~   91 (93)
T 3plu_A           22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTN-LELY   91 (93)
T ss_dssp             EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCE-EEEE
T ss_pred             EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCE-EEEE
Confidence            6889975 9999999999999999999999999999999999999999999999999999998877 8874

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.78  E-value=7.6e-19  Score=124.88  Aligned_cols=77  Identities=26%  Similarity=0.472  Sum_probs=70.0

Q ss_pred             EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCC
Q 045158           85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRD  163 (252)
Q Consensus        85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~  163 (252)
                      |+|+|+ ++|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|++    |++|
T Consensus         1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i~~g~~l~l~~----rl~G   75 (88)
T 4fbj_B            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DEKTAADYKILGGSVLHLVL----ALRG   75 (88)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBTTTTTCCTTCEEEEEC----BCC-
T ss_pred             CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECC-CCCcHHHcCCCCCCEEEEEE----ECCC
Confidence            689999 68999999999999999999999999999999999999999996 89999999999999999999    7888


Q ss_pred             CCc
Q 045158          164 NPP  166 (252)
Q Consensus       164 ~~~  166 (252)
                      |+.
T Consensus        76 g~~   78 (88)
T 4fbj_B           76 GGG   78 (88)
T ss_dssp             ---
T ss_pred             CCC
Confidence            753

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.76  E-value=1.6e-18  Score=122.10  Aligned_cols=72  Identities=36%  Similarity=0.586  Sum_probs=67.6

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCee-cCCCCCccccccccCCcEEEEEecC
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWE-LVDGLDMEDYPIVKEGTKIDLTINP   73 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~-L~d~~~L~~~~i~~~~t~i~l~~~~   73 (252)
                      |+|+|+. +|+.++++|++++||++||++|++.+|+|+++|+|+|+|+. |+|+.+|++|+|.++++ |+|+++|
T Consensus        11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~-i~lv~~p   84 (84)
T 2kk8_A           11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSD-IQLEVSS   84 (84)
T ss_dssp             EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSC-EEEEECC
T ss_pred             eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCE-EEEEEcC
Confidence            8999965 99999999999999999999999999999999999999999 99999999999998888 8888753

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.75  E-value=5e-18  Score=120.39  Aligned_cols=79  Identities=27%  Similarity=0.492  Sum_probs=73.7

Q ss_pred             cCCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeecc
Q 045158           81 QHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMN  159 (252)
Q Consensus        81 ~~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~  159 (252)
                      ....|+|+|+ ..|+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|+ |+.+|++|+|+++++|+|++    
T Consensus         9 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~-d~~tL~~~~i~~~~~i~l~~----   83 (88)
T 3dbh_I            9 SGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DEKTAADYKILGGSVLHLVL----   83 (88)
T ss_dssp             CCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECC-TTSBGGGGTCCTTCEEEECC----
T ss_pred             CCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECC-CCCcHHHcCCCCCCEEEEEE----
Confidence            4567999999 68999999999999999999999999999999999999999996 89999999999999999998    


Q ss_pred             ccCCC
Q 045158          160 RLRDN  164 (252)
Q Consensus       160 ~~~~~  164 (252)
                      |++||
T Consensus        84 rl~GG   88 (88)
T 3dbh_I           84 RLRGG   88 (88)
T ss_dssp             CCCCC
T ss_pred             eCCCC
Confidence            67665

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.75  E-value=4.3e-18  Score=119.81  Aligned_cols=74  Identities=24%  Similarity=0.402  Sum_probs=70.0

Q ss_pred             CCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECcee-cccccccccccCCCCCCEEEEEee
Q 045158           82 HDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIE-LDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        82 ~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~-L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      ..-|+|+|+ ++|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+. |+ |+.+|++|+|++|++|+|+++
T Consensus         8 ~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~-D~~tL~~y~I~~gs~i~lv~~   83 (84)
T 2kk8_A            8 HSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILR-EDLTVEQCQIVPTSDIQLEVS   83 (84)
T ss_dssp             CCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCC-SSSBHHHHTCCTTSCEEEEEC
T ss_pred             cCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecC-CcCCHHHcCCCCCCEEEEEEc
Confidence            456999999 689999999999999999999999999999999999999999 96 889999999999999999885

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.75  E-value=9e-18  Score=120.69  Aligned_cols=82  Identities=59%  Similarity=0.991  Sum_probs=73.9

Q ss_pred             CCcCCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceeccccc-ccccccCCCCCCEEEEEeee
Q 045158           79 FNQHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEF-RNLSEYGIREFSEIIVFLKT  157 (252)
Q Consensus        79 ~~~~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~-~~L~~y~i~~~s~i~l~~~~  157 (252)
                      ..+...|+|+|+..+.++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+ |+ .+|++|+|++|++|+|++  
T Consensus        10 ~~~~~~~~I~Vk~~~~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~~tL~~ygI~~gstl~lv~--   86 (94)
T 2kan_A           10 HAAVRKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELA-DDYRNLNEYGITEFSEIVVFL--   86 (94)
T ss_dssp             CSSSCCEEEEEECSSCEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEEC-CTTSBHHHHTCCTTEEEEEEE--
T ss_pred             ccCCCCEEEEEEcCCcEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECC-CCcccHHHCCCCCCCEEEEEE--
Confidence            44567899999954338999999999999999999999999999999999999996 88 999999999999999999  


Q ss_pred             ccccCCCC
Q 045158          158 MNRLRDNP  165 (252)
Q Consensus       158 ~~~~~~~~  165 (252)
                        |++||+
T Consensus        87 --r~~gg~   92 (94)
T 2kan_A           87 --KSINRA   92 (94)
T ss_dssp             --CCCSSC
T ss_pred             --eCCCCC
Confidence              677764

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.75  E-value=4.6e-18  Score=118.24  Aligned_cols=71  Identities=20%  Similarity=0.321  Sum_probs=66.9

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN   72 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~   72 (252)
                      |+|+|+. +|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++
T Consensus         5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~-l~l~~r   76 (79)
T 3phx_B            5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLST-VFMNLR   76 (79)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCE-EEEEEC
T ss_pred             EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCE-EEEEEe
Confidence            7899976 8999999999999999999999999999999999999999999999999999997777 888764

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.75  E-value=2e-18  Score=122.01  Aligned_cols=73  Identities=21%  Similarity=0.317  Sum_probs=66.4

Q ss_pred             CEEEEEe-CCeEEEEEec--CCCcHHHHHHHH-HHHhCCCCCceEEEEcCeecCCCCCcccccc-ccCCcEEEEEecCC
Q 045158            1 MRIIIVA-NGHEFVLEVG--LQEPVLEIKRKI-EQIFNIPATSQTLAVSGWELVDGLDMEDYPI-VKEGTKIDLTINPF   74 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~--~~~tV~~lK~~I-~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i-~~~~t~i~l~~~~~   74 (252)
                      |+|+|+. +|++++++|+  +++||.+||++| +++.|+|+++|+|+|+|+.|+|+.+|++|+| .++++ |+|.++|.
T Consensus         2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~st-l~v~~~~~   79 (87)
T 2lxa_A            2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANST-ITVMIKPN   79 (87)
T ss_dssp             CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCE-EEEEECCC
T ss_pred             EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCE-EEEEcCCC
Confidence            8999966 8988888755  999999999999 9999999999999999999999999999999 55666 99998765

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.74  E-value=1.3e-17  Score=114.82  Aligned_cols=75  Identities=27%  Similarity=0.480  Sum_probs=69.0

Q ss_pred             EEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCC
Q 045158           85 IHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRD  163 (252)
Q Consensus        85 ~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~  163 (252)
                      |+|+|+. +|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|. |+.+|++|+|++|++|++.+    |++|
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~-d~~tL~~~~i~~g~~i~l~~----~~~G   75 (76)
T 1ndd_A            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DEKTAADYKILGGSVLHLVL----ALRG   75 (76)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBGGGGTCCTTCEEEEEE----CCC-
T ss_pred             CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEE----eCCC
Confidence            6899995 7999999999999999999999999999999999999999996 88999999999999999998    6666


Q ss_pred             C
Q 045158          164 N  164 (252)
Q Consensus       164 ~  164 (252)
                      |
T Consensus        76 G   76 (76)
T 1ndd_A           76 G   76 (76)
T ss_dssp             -
T ss_pred             C
Confidence            4

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.74  E-value=9.2e-18  Score=118.20  Aligned_cols=77  Identities=31%  Similarity=0.596  Sum_probs=69.9

Q ss_pred             cEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccC
Q 045158           84 KIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLR  162 (252)
Q Consensus        84 ~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~  162 (252)
                      +|+|+|+ ..|+++.+++++++||++||++|++++++|+++|+|+|+|+.|+ |+.+|++|+|+++++|+|++    |++
T Consensus         3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~-d~~tL~~~~i~~~~~i~l~~----rl~   77 (85)
T 3n3k_B            3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIHNHSALYLLL----KLR   77 (85)
T ss_dssp             -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECC-TTCBTTTTTCCTTCEEEEEE----CCC
T ss_pred             eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECC-CCCCHHHCCCCCCCEEEEEE----ecc
Confidence            5899999 58899999999999999999999999999999999999999996 88999999999999999999    677


Q ss_pred             CCC
Q 045158          163 DNP  165 (252)
Q Consensus       163 ~~~  165 (252)
                      ||+
T Consensus        78 GG~   80 (85)
T 3n3k_B           78 GGG   80 (85)
T ss_dssp             ---
T ss_pred             CCC
Confidence            763

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.74  E-value=9.7e-18  Score=121.52  Aligned_cols=80  Identities=31%  Similarity=0.560  Sum_probs=72.1

Q ss_pred             CcCCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeec
Q 045158           80 NQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTM  158 (252)
Q Consensus        80 ~~~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~  158 (252)
                      .....|+|+|+ ..|+.+.++|++++||.+||++|++++|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|++   
T Consensus        18 ~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i~~g~~i~l~~---   93 (98)
T 4hcn_B           18 FQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL---   93 (98)
T ss_dssp             ----CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTCBSGGGTCCTTEEEEEEC---
T ss_pred             CCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEE---
Confidence            34567999999 68999999999999999999999999999999999999999996 89999999999999999998   


Q ss_pred             cccCCC
Q 045158          159 NRLRDN  164 (252)
Q Consensus       159 ~~~~~~  164 (252)
                       |++||
T Consensus        94 -rl~GG   98 (98)
T 4hcn_B           94 -RLRGG   98 (98)
T ss_dssp             -BCSCC
T ss_pred             -ecCCC
Confidence             67765

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.74  E-value=1.9e-17  Score=117.75  Aligned_cols=80  Identities=21%  Similarity=0.355  Sum_probs=72.9

Q ss_pred             CCcEEEEEEe-CC-cEEEE-eeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeec
Q 045158           82 HDKIHIIIKF-PS-RKFNI-DVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTM  158 (252)
Q Consensus        82 ~~~~~i~v~~-~g-~~~~l-~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~  158 (252)
                      +.+|+|+|+. .| +.+.+ ++++++||.+||++|++..|+|+++|+|+|+|+.|+ |+.+|++|+|.++++|+|++   
T Consensus         5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~---   80 (89)
T 1wy8_A            5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLE-NGYTLFDYDVGLNDIIQLLV---   80 (89)
T ss_dssp             SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECC-SSSBHHHHTCCTTCEEEEEE---
T ss_pred             CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECC-CCCCHHHCCCCCCCEEEEEE---
Confidence            4679999994 78 68999 599999999999999999999999999999999996 88999999999999999999   


Q ss_pred             cccCCCCc
Q 045158          159 NRLRDNPP  166 (252)
Q Consensus       159 ~~~~~~~~  166 (252)
                       |++||++
T Consensus        81 -~~~gG~~   87 (89)
T 1wy8_A           81 -RPDSGPS   87 (89)
T ss_dssp             -CCCCSSC
T ss_pred             -eCCCCCC
Confidence             6777643

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.74  E-value=1.3e-17  Score=118.50  Aligned_cols=72  Identities=26%  Similarity=0.404  Sum_probs=67.7

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecC
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINP   73 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~   73 (252)
                      |+|+|+. +|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++.
T Consensus         1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~-l~l~~rl   73 (88)
T 4fbj_B            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSV-LHLVLAL   73 (88)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCE-EEEECBC
T ss_pred             CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCE-EEEEEEC
Confidence            8999975 9999999999999999999999999999999999999999999999999999997777 8888654

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.73  E-value=3.3e-18  Score=123.19  Aligned_cols=69  Identities=13%  Similarity=0.152  Sum_probs=65.0

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEE
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLT   70 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~   70 (252)
                      |+|+|+. +|+.++++|++++||.+||++|++++|+|+++|+|+|+|++|+|+.+|++|+|.++++ |+|.
T Consensus        29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gst-lhL~   98 (100)
T 1uh6_A           29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMN-LELY   98 (100)
T ss_dssp             EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEE-EEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCE-EEEE
Confidence            7889976 7999999999999999999999999999999999999999999999999999997777 8875

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.73  E-value=1.4e-17  Score=118.26  Aligned_cols=74  Identities=22%  Similarity=0.310  Sum_probs=68.2

Q ss_pred             CcCCcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           80 NQHDKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        80 ~~~~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      ..+..|+|+|+. .|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+ |+.+|++|+| +|++|||++
T Consensus        13 ~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i-~g~~i~lv~   87 (88)
T 4eew_A           13 EEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQ-DDKKLQEYNV-GGKVIHLVE   87 (88)
T ss_dssp             --CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTC-TTEEEEEEE
T ss_pred             cCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECC-CCCcHHHcCC-CCcEEEEEE
Confidence            345679999995 7999999999999999999999999999999999999999996 8899999999 899999986

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.73  E-value=1.8e-17  Score=119.57  Aligned_cols=77  Identities=31%  Similarity=0.581  Sum_probs=70.6

Q ss_pred             cEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccC
Q 045158           84 KIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLR  162 (252)
Q Consensus        84 ~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~  162 (252)
                      .|+|+|+ ..|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|. |+.+|++|+|.+|++|+|++    |++
T Consensus         1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~-d~~tL~~~~i~~~~~i~l~~----r~~   75 (96)
T 3k9o_B            1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL----RLR   75 (96)
T ss_dssp             -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEE----CCC
T ss_pred             CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEE----EcC
Confidence            3899999 58999999999999999999999999999999999999999996 88999999999999999999    677


Q ss_pred             CCC
Q 045158          163 DNP  165 (252)
Q Consensus       163 ~~~  165 (252)
                      ||+
T Consensus        76 gG~   78 (96)
T 3k9o_B           76 GYA   78 (96)
T ss_dssp             C--
T ss_pred             CCC
Confidence            764

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.73  E-value=2.1e-17  Score=116.97  Aligned_cols=78  Identities=22%  Similarity=0.374  Sum_probs=72.9

Q ss_pred             CCcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccc
Q 045158           82 HDKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNR  160 (252)
Q Consensus        82 ~~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~  160 (252)
                      ...|+|+|+. .|+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|+ |+.+|++|+|.++++|+|++    |
T Consensus         5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~-d~~tL~~~~i~~g~~i~l~~----~   79 (87)
T 1wh3_A            5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQ-DWLGLGIYGIQDSDTLILSK----K   79 (87)
T ss_dssp             SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECC-SSSBHHHHTCCTTEEEEEEE----C
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEcc-CCCCHHHCCCCCCCEEEEEE----e
Confidence            4579999995 7999999999999999999999999999999999999999996 88999999999999999999    6


Q ss_pred             cCCC
Q 045158          161 LRDN  164 (252)
Q Consensus       161 ~~~~  164 (252)
                      ++||
T Consensus        80 ~~GG   83 (87)
T 1wh3_A           80 KGSG   83 (87)
T ss_dssp             SCCC
T ss_pred             ccCC
Confidence            7776

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.73  E-value=1.8e-17  Score=118.08  Aligned_cols=73  Identities=22%  Similarity=0.315  Sum_probs=68.8

Q ss_pred             CCcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           82 HDKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        82 ~~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      +..|+|+|+. +|+.+.++|++++||.+||++|++++|+|+++|+|+|+|+.|+ |+.+|++|+| +|++|||+++
T Consensus         3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~-d~~tL~~~~i-~g~~i~l~~~   76 (90)
T 4dwf_A            3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQ-DDKKLQEYNV-GGKVIHLVER   76 (90)
T ss_dssp             CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTC-TTEEEEEEEC
T ss_pred             CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECC-CCCCHHHcCC-CCcEEEEEec
Confidence            3579999994 8999999999999999999999999999999999999999996 8999999999 8999999995

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.73  E-value=9.9e-18  Score=116.53  Aligned_cols=76  Identities=21%  Similarity=0.336  Sum_probs=70.8

Q ss_pred             cEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccC
Q 045158           84 KIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLR  162 (252)
Q Consensus        84 ~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~  162 (252)
                      .|+|+|+ .+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+ |+.+|++|+|.+|++|++++    |++
T Consensus         3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~-d~~tl~~~~i~~~~~i~l~~----~~~   77 (79)
T 2uyz_B            3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIA-DNHTPKELGMEEEDVIEVYQ----EQT   77 (79)
T ss_dssp             EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCHHHHTCCTTEEEEEEE----CCC
T ss_pred             eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeC-CCCCHHHcCCCCCCEEEEEE----ecc
Confidence            4899999 68999999999999999999999999999999999999999996 88999999999999999998    666


Q ss_pred             CC
Q 045158          163 DN  164 (252)
Q Consensus       163 ~~  164 (252)
                      ||
T Consensus        78 GG   79 (79)
T 2uyz_B           78 GG   79 (79)
T ss_dssp             C-
T ss_pred             CC
Confidence            64

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.73  E-value=2e-17  Score=114.63  Aligned_cols=73  Identities=21%  Similarity=0.381  Sum_probs=67.8

Q ss_pred             CcEEEEEE-eCCcEE-EEe-eCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           83 DKIHIIIK-FPSRKF-NID-VDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        83 ~~~~i~v~-~~g~~~-~l~-v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      +.|+|+|+ .+|+.+ .++ +++++||++||++|++..|+|+++|+|+|+|+.|+ |+.+|++|+|.+|++|+|+++
T Consensus         1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~-d~~tL~~~~i~~g~~i~l~~r   76 (78)
T 2faz_A            1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQME-DGHTLFDYEVRLNDTIQLLVR   76 (78)
T ss_dssp             -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTTTTTCCTTCEEEEEEC
T ss_pred             CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECC-CCCCHHHcCCCCCCEEEEEEe
Confidence            46999999 478885 999 99999999999999999999999999999999996 889999999999999999984

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.73  E-value=1.3e-17  Score=118.45  Aligned_cols=77  Identities=32%  Similarity=0.620  Sum_probs=67.9

Q ss_pred             CcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeecccc
Q 045158           83 DKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRL  161 (252)
Q Consensus        83 ~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~  161 (252)
                      ..|+|+|+ ++|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|.+|++|+|++    |+
T Consensus         8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~----r~   82 (88)
T 1sif_A            8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL----RL   82 (88)
T ss_dssp             --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBSGGGTCCTTCEEEEEC------
T ss_pred             cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECC-CCCcHHHcCCCCCCEEEEEE----eC
Confidence            36999999 68999999999999999999999999999999999999999996 88999999999999999998    66


Q ss_pred             CCC
Q 045158          162 RDN  164 (252)
Q Consensus       162 ~~~  164 (252)
                      +||
T Consensus        83 ~GG   85 (88)
T 1sif_A           83 RGG   85 (88)
T ss_dssp             ---
T ss_pred             CCC
Confidence            676

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.73  E-value=1.1e-17  Score=120.01  Aligned_cols=78  Identities=14%  Similarity=0.352  Sum_probs=70.5

Q ss_pred             cCCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccc
Q 045158           81 QHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNR  160 (252)
Q Consensus        81 ~~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~  160 (252)
                      ....|+|+|+. |+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+ |+.+|++|+|+++++|+|++    |
T Consensus        16 ~~~~m~I~Vk~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~y~I~~gstI~lv~----r   89 (93)
T 2l7r_A           16 PRGSMQLFVRA-QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLE-DEATLGQCGVEALTTLEVAG----R   89 (93)
T ss_dssp             ----CEEEEES-SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECC-TTSBHHHHTCCSSCEEEEEC----C
T ss_pred             CCCcEEEEEEC-CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEE----e
Confidence            35579999998 899999999999999999999999999999999999999996 88999999999999999998    6


Q ss_pred             cCCC
Q 045158          161 LRDN  164 (252)
Q Consensus       161 ~~~~  164 (252)
                      ++||
T Consensus        90 l~GG   93 (93)
T 2l7r_A           90 MLGG   93 (93)
T ss_dssp             CCCC
T ss_pred             cCCC
Confidence            7765

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.73  E-value=8.6e-18  Score=121.02  Aligned_cols=73  Identities=18%  Similarity=0.272  Sum_probs=68.7

Q ss_pred             CCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           82 HDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        82 ~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      ..+|+|+|+ ..|+++.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+ |+.+|++|+|+++++|+|..
T Consensus        26 ~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~-D~~TL~dygI~~gstlhL~~   99 (100)
T 1uh6_A           26 ATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFK-DHVSLGDYEIHDGMNLELYY   99 (100)
T ss_dssp             CCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECC-SSCBHHHHTCCTTEEEEEEC
T ss_pred             CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECC-CCCCHHHcCCCCCCEEEEEe
Confidence            456999999 57999999999999999999999999999999999999999996 89999999999999999874

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.73  E-value=2.4e-17  Score=117.80  Aligned_cols=76  Identities=26%  Similarity=0.523  Sum_probs=71.3

Q ss_pred             CcCCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           80 NQHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        80 ~~~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      .....|+|+|+ ..|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+++
T Consensus        13 ~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~r   89 (91)
T 3v6c_B           13 VPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLR   89 (91)
T ss_dssp             CCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTCBTGGGTCCTTCEEEEECC
T ss_pred             CCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECC-CcCcHHHCCCCCCCEEEEEEe
Confidence            34668999999 68999999999999999999999999999999999999999996 889999999999999999983

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.73  E-value=2.9e-17  Score=112.96  Aligned_cols=75  Identities=32%  Similarity=0.586  Sum_probs=69.9

Q ss_pred             EEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCC
Q 045158           85 IHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRD  163 (252)
Q Consensus        85 ~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~  163 (252)
                      |+|+|+. +|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|. |+.+|++|+|.+|++|++.+    |++|
T Consensus         1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~-d~~tL~~~~i~~g~~i~l~~----~~~G   75 (76)
T 3a9j_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQRESTLHLVL----RLRG   75 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTGGGTCCTTCEEEEEE----CCCC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECC-CCCcHHHcCCCCCCEEEEEE----eCCC
Confidence            6899995 7899999999999999999999999999999999999999996 88999999999999999998    6666


Q ss_pred             C
Q 045158          164 N  164 (252)
Q Consensus       164 ~  164 (252)
                      |
T Consensus        76 G   76 (76)
T 3a9j_A           76 G   76 (76)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.73  E-value=2.6e-17  Score=115.82  Aligned_cols=76  Identities=32%  Similarity=0.658  Sum_probs=71.6

Q ss_pred             cEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccC
Q 045158           84 KIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLR  162 (252)
Q Consensus        84 ~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~  162 (252)
                      +|+|+|+ ..|+++.+++++++||.+||++|++.+++|+++|+|+|+|+.|. |+.+|++|+|+++++|+|++    |++
T Consensus         3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~-d~~tL~~~~i~~~~~l~l~~----r~~   77 (85)
T 3mtn_B            3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKWSTLFLLL----RLR   77 (85)
T ss_dssp             CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBTGGGTCCTTCEEEEEC----CCC
T ss_pred             eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECC-CCCCHHHcCCCCCCEEEEEE----ECc
Confidence            5999999 57899999999999999999999999999999999999999996 88999999999999999999    676


Q ss_pred             CC
Q 045158          163 DN  164 (252)
Q Consensus       163 ~~  164 (252)
                      ||
T Consensus        78 GG   79 (85)
T 3mtn_B           78 GG   79 (85)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.73  E-value=5.8e-18  Score=119.61  Aligned_cols=74  Identities=26%  Similarity=0.401  Sum_probs=67.9

Q ss_pred             cEEEEEE-eCCcEEEEeeC--CCccHHHHHHHH-HHHhCCCCccEEEEECceecccccccccccCC-CCCCEEEEEeeec
Q 045158           84 KIHIIIK-FPSRKFNIDVD--RTDTVRSLKEKI-HIIDGTPIKRMLLFFSGIELDDEFRNLSEYGI-REFSEIIVFLKTM  158 (252)
Q Consensus        84 ~~~i~v~-~~g~~~~l~v~--~~~TV~~lK~~I-~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i-~~~s~i~l~~~~~  158 (252)
                      +|+|+|| +.|++++++++  +++||.+||++| ++..|+|+++|+|+|+|+.|+ |+.+|++|+| ++|++|+|+.+|.
T Consensus         1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~-D~~tL~~y~I~~~~stl~v~~~~~   79 (87)
T 2lxa_A            1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLH-DNLFLSDLKVTPANSTITVMIKPN   79 (87)
T ss_dssp             CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECC-TTCBHHHHCCCGGGCEEEEEECCC
T ss_pred             CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECc-CcCCHHHcCCCCCCCEEEEEcCCC
Confidence            4899999 58888888755  999999999999 999999999999999999996 8999999999 7999999999764

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.72  E-value=1.6e-17  Score=120.06  Aligned_cols=79  Identities=20%  Similarity=0.336  Sum_probs=73.2

Q ss_pred             cCCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeecc
Q 045158           81 QHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMN  159 (252)
Q Consensus        81 ~~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~  159 (252)
                      ....|+|+|+ .+|+.+.++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|++    
T Consensus        18 ~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~-d~~tl~dy~i~~g~~I~l~~----   92 (97)
T 1wyw_B           18 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIA-DNHTPKELGMEEEDVIEVYQ----   92 (97)
T ss_dssp             -CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCHHHHTCCTTCEEEEEE----
T ss_pred             CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcC-CCCCHHHCCCCCCCEEEEEE----
Confidence            3557999999 68999999999999999999999999999999999999999996 88999999999999999998    


Q ss_pred             ccCCC
Q 045158          160 RLRDN  164 (252)
Q Consensus       160 ~~~~~  164 (252)
                      |++||
T Consensus        93 ~~~GG   97 (97)
T 1wyw_B           93 EQTGG   97 (97)
T ss_dssp             SSSCC
T ss_pred             ecCCC
Confidence            67665

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.72  E-value=2.3e-17  Score=114.38  Aligned_cols=72  Identities=26%  Similarity=0.443  Sum_probs=66.5

Q ss_pred             CEEEEEe-CCeEE-EEE-ecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecC
Q 045158            1 MRIIIVA-NGHEF-VLE-VGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINP   73 (252)
Q Consensus         1 M~v~v~~-~g~~~-~l~-v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~   73 (252)
                      |+|+|+. +|+.+ +++ +++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|++++
T Consensus         3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~-i~l~~r~   77 (78)
T 2faz_A            3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDT-IQLLVRQ   77 (78)
T ss_dssp             EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCE-EEEEECC
T ss_pred             EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCE-EEEEEeC
Confidence            8899976 78885 999 99999999999999999999999999999999999999999999997777 9988754

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.72  E-value=1.3e-17  Score=120.32  Aligned_cols=73  Identities=19%  Similarity=0.324  Sum_probs=65.5

Q ss_pred             CEEEEEe-CCeEEEE--EecCCCcHHHHHHHH-HHHhCCCCCceEEEEcCeecCCCCCcccccc-ccCCcEEEEEecCC
Q 045158            1 MRIIIVA-NGHEFVL--EVGLQEPVLEIKRKI-EQIFNIPATSQTLAVSGWELVDGLDMEDYPI-VKEGTKIDLTINPF   74 (252)
Q Consensus         1 M~v~v~~-~g~~~~l--~v~~~~tV~~lK~~I-~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i-~~~~t~i~l~~~~~   74 (252)
                      |+|+|+. +|+.|++  +|++++||++||++| ++..|+|+++|||+|+|+.|+|+.+|++|+| .++++ |+|+++++
T Consensus        20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~t-i~lmvskp   97 (98)
T 4a20_A           20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANST-ITVMIKPN   97 (98)
T ss_dssp             EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCE-EEEEECCC
T ss_pred             EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCE-EEEEEeCC
Confidence            7899966 8887776  666999999999999 8889999999999999999999999999999 86777 99998754

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.72  E-value=1.1e-17  Score=118.83  Aligned_cols=77  Identities=29%  Similarity=0.489  Sum_probs=69.2

Q ss_pred             CcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeecccc
Q 045158           83 DKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRL  161 (252)
Q Consensus        83 ~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~  161 (252)
                      .+|+|+|+. +|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|++    +.
T Consensus         3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~~I~~g~~i~l~~----~~   77 (88)
T 2hj8_A            3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLE-DQLPLGEYGLKPLSTVFMNL----RL   77 (88)
T ss_dssp             CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCC-TTSBHHHHHCSTTCEEEEEE----C-
T ss_pred             ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEE----Ec
Confidence            469999994 7999999999999999999999999999999999999999996 88999999999999999998    55


Q ss_pred             CCC
Q 045158          162 RDN  164 (252)
Q Consensus       162 ~~~  164 (252)
                      +||
T Consensus        78 ~gg   80 (88)
T 2hj8_A           78 RGG   80 (88)
T ss_dssp             ---
T ss_pred             CCC
Confidence            555

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.72  E-value=3e-17  Score=117.00  Aligned_cols=72  Identities=24%  Similarity=0.351  Sum_probs=67.4

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF   74 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~   74 (252)
                      |+|+|+. +|+++.++|++++||.+||.+|++++|+|+++|+|+|+|+.|+|+.+|++|+| ++++ |||+++.+
T Consensus         6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~-i~l~~~~~   78 (90)
T 4dwf_A            6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKV-IHLVERAP   78 (90)
T ss_dssp             EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEE-EEEEECCC
T ss_pred             EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcE-EEEEecCC
Confidence            7899976 89999999999999999999999999999999999999999999999999999 6766 99998755

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.71  E-value=6.4e-17  Score=119.79  Aligned_cols=78  Identities=31%  Similarity=0.558  Sum_probs=72.4

Q ss_pred             CCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccc
Q 045158           82 HDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNR  160 (252)
Q Consensus        82 ~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~  160 (252)
                      ...|+|+|+ +.|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|. |+.+|++|+|+++++|+|++    |
T Consensus        33 ~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~gI~~gs~I~l~~----r  107 (111)
T 3vdz_A           33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL----R  107 (111)
T ss_dssp             GGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTTTTTCCTTCEEEEEE----C
T ss_pred             CccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEE----e
Confidence            457999999 68999999999999999999999999999999999999999996 88999999999999999999    6


Q ss_pred             cCCC
Q 045158          161 LRDN  164 (252)
Q Consensus       161 ~~~~  164 (252)
                      ++||
T Consensus       108 l~GG  111 (111)
T 3vdz_A          108 LRGG  111 (111)
T ss_dssp             CCC-
T ss_pred             cCCC
Confidence            7664

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.71  E-value=5.2e-17  Score=119.72  Aligned_cols=73  Identities=21%  Similarity=0.301  Sum_probs=66.7

Q ss_pred             CEEEEEe--CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccccc-------CCcEEEEEe
Q 045158            1 MRIIIVA--NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVK-------EGTKIDLTI   71 (252)
Q Consensus         1 M~v~v~~--~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~-------~~t~i~l~~   71 (252)
                      |.|+++.  ...++++++.+++||.+||.+|+.++|+|+++|||+|+|+.|+|+.||++|||.+       +++ |||+.
T Consensus         1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~at-l~Lvl   79 (118)
T 4ajy_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPAT-VGLAF   79 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEE-EEEEE
T ss_pred             CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCE-EEEEE
Confidence            7788844  6668999999999999999999999999999999999999999999999999998       777 99988


Q ss_pred             cCC
Q 045158           72 NPF   74 (252)
Q Consensus        72 ~~~   74 (252)
                      +..
T Consensus        80 r~~   82 (118)
T 4ajy_B           80 RAD   82 (118)
T ss_dssp             CCS
T ss_pred             ecC
Confidence            754

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.71  E-value=8.6e-17  Score=115.82  Aligned_cols=71  Identities=32%  Similarity=0.544  Sum_probs=67.3

Q ss_pred             EEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHH---hCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           85 IHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHII---DGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        85 ~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~---~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      |+|+|+. .|+.+.+++++++||++||++|++.   .|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|+++
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~-D~~tL~~ygI~~g~~i~l~~~   75 (95)
T 1uel_A            1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILN-DDTALKEYKIDEKNFVVVMVT   75 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECC-TTSBGGGGTCCSSSEEEEEES
T ss_pred             CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECC-CcCcHHHCCCCCCCEEEEEEe
Confidence            7899995 7999999999999999999999999   799999999999999996 889999999999999999985

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.71  E-value=2.7e-17  Score=116.75  Aligned_cols=86  Identities=16%  Similarity=0.238  Sum_probs=66.6

Q ss_pred             CCCCCEEEEEeeeccccCCCCccccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeec
Q 045158          145 IREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMR  224 (252)
Q Consensus       145 i~~~s~i~l~~~~~~~~~~~~~~~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~  224 (252)
                      ..+++++++++.         .+..|+++|+    ..+|+++.++|++++||++||++|++++|+|+++|+|+|+|+.|+
T Consensus         2 ~~~~~~~~~~~~---------~~~~m~i~Vk----~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~   68 (88)
T 4eew_A            2 MEPNDSTSTAVE---------EPDSLEVLVK----TLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQ   68 (88)
T ss_dssp             ----------------------CCEEEEEEE----ETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC
T ss_pred             CCCCCceEEeec---------CCCeEEEEEE----cCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECC
Confidence            456677777663         2234777776    467999999999999999999999999999999999999999999


Q ss_pred             CCccccccCCCCCCEEEEec
Q 045158          225 DNCSLRWHGVEYGDILYVFK  244 (252)
Q Consensus       225 d~~tL~~y~I~~gsti~l~~  244 (252)
                      |+.+|++||| +|++|+|+.
T Consensus        69 D~~tL~~~~i-~g~~i~lv~   87 (88)
T 4eew_A           69 DDKKLQEYNV-GGKVIHLVE   87 (88)
T ss_dssp             TTSBGGGGTC-TTEEEEEEE
T ss_pred             CCCcHHHcCC-CCcEEEEEE
Confidence            9999999999 899999973

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.71  E-value=7.7e-17  Score=119.39  Aligned_cols=78  Identities=31%  Similarity=0.558  Sum_probs=72.1

Q ss_pred             CCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccc
Q 045158           82 HDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNR  160 (252)
Q Consensus        82 ~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~  160 (252)
                      ...|+|+|+ ..|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|. |+.+|++|+|.+|++|+|++    |
T Consensus        33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~gI~~gs~I~l~~----r  107 (111)
T 2ojr_A           33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL----R  107 (111)
T ss_dssp             SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECC-SSCBTTTTTCCTTCEEEEEE----C
T ss_pred             CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECC-CCCcHHHcCCCCCCEEEEEE----e
Confidence            457999999 57899999999999999999999999999999999999999996 88999999999999999998    6


Q ss_pred             cCCC
Q 045158          161 LRDN  164 (252)
Q Consensus       161 ~~~~  164 (252)
                      ++||
T Consensus       108 l~GG  111 (111)
T 2ojr_A          108 LRGG  111 (111)
T ss_dssp             CCC-
T ss_pred             CCCC
Confidence            6664

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.71  E-value=1.2e-18  Score=129.78  Aligned_cols=98  Identities=22%  Similarity=0.301  Sum_probs=82.7

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCCCCccC
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPFLQSSF   79 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~~~~~~   79 (252)
                      .+|+|+. +|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++..     
T Consensus        10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gst-I~l~~~~~-----   83 (114)
T 2kdi_A           10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQREST-LHLVLRLR-----   83 (114)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCE-EEEEECCC-----
T ss_pred             EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCE-EEEEEEcC-----
Confidence            4788855 9999999999999999999999999999999999999999999999999999997777 88886533     


Q ss_pred             CcCCcEEEEEEe----CCcEEEEeeCCCccHH
Q 045158           80 NQHDKIHIIIKF----PSRKFNIDVDRTDTVR  107 (252)
Q Consensus        80 ~~~~~~~i~v~~----~g~~~~l~v~~~~TV~  107 (252)
                         +.++++++.    .|+++++++.+++||.
T Consensus        84 ---GG~~~~~~~~~~~~g~~~~~~v~~~~~~~  112 (114)
T 2kdi_A           84 ---GGSMGGAADEEELIRKAIELSLKESRNSG  112 (114)
T ss_dssp             ---SSCCCSSCSSSHHHHHHHHSSSHHHHHGG
T ss_pred             ---CCceeeccccccccCceEEEEeccccccC
Confidence               344555552    3677888888777764

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.71  E-value=4.3e-17  Score=116.44  Aligned_cols=71  Identities=34%  Similarity=0.539  Sum_probs=66.7

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN   72 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~   72 (252)
                      |+|+|+. +|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.++++ |+|+++
T Consensus        18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~-i~l~~r   89 (91)
T 3v6c_B           18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR   89 (91)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCE-EEEECC
T ss_pred             EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCE-EEEEEe
Confidence            7899975 8999999999999999999999999999999999999999999999999999997777 888754

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.71  E-value=2.5e-17  Score=121.03  Aligned_cols=74  Identities=15%  Similarity=0.197  Sum_probs=67.7

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCCC
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPFL   75 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~~   75 (252)
                      |+|+|+. +|+.+.++|++++||.+||.+|++++|+|+++|+|+|+|+.|+|+.+|++|||.++++ |+|+++++.
T Consensus         2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~-i~lv~~~~~   76 (106)
T 3m62_B            2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQ-VVFMVSQKK   76 (106)
T ss_dssp             -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCE-EEEECCC--
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCE-EEEEEcCCC
Confidence            8899976 8999999999999999999999999999999999999999999999999999997777 999987653

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.70  E-value=1.1e-16  Score=115.29  Aligned_cols=73  Identities=22%  Similarity=0.350  Sum_probs=68.4

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHH---hCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQI---FNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF   74 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~---~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~   74 (252)
                      |+|+|+. +|+.+.++|++++||.+||.+|++.   +|+|+++|+|+|+|+.|+|+.+|++|||.++++ |+|+++++
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~-i~l~~~~~   77 (95)
T 1uel_A            1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNF-VVVMVTKP   77 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSE-EEEEESSC
T ss_pred             CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCE-EEEEEeCC
Confidence            9999976 8999999999999999999999999   799999999999999999999999999997777 99988755

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.70  E-value=9.5e-17  Score=110.79  Aligned_cols=71  Identities=27%  Similarity=0.379  Sum_probs=65.7

Q ss_pred             CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158            1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN   72 (252)
Q Consensus         1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~   72 (252)
                      |+|+|+.+|+.+.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.++++ |++..+
T Consensus         5 m~i~vk~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~-i~l~~~   75 (77)
T 2bwf_A            5 LNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHS-VHLVKS   75 (77)
T ss_dssp             EEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCE-EEEEEC
T ss_pred             EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCE-EEEEEc
Confidence            67778669999999999999999999999999999999999999999999999999999997777 888754

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.70  E-value=7.5e-17  Score=113.55  Aligned_cols=73  Identities=23%  Similarity=0.327  Sum_probs=66.4

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHH---hCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQI---FNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF   74 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~---~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~   74 (252)
                      |+|+|+. +|+.+.+++++++||.+||++|++.   .|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+.+++
T Consensus         6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~-i~l~~~~~   82 (85)
T 2wyq_A            6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF-VVVMVTKT   82 (85)
T ss_dssp             EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSE-EEEEEC--
T ss_pred             EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCE-EEEEEcCC
Confidence            7888976 7999999999999999999999998   899999999999999999999999999997777 99887654

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.70  E-value=8.4e-17  Score=110.62  Aligned_cols=71  Identities=27%  Similarity=0.421  Sum_probs=66.8

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN   72 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~   72 (252)
                      |+|+|+. +|+.+.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |++.++
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~-i~l~~~   72 (76)
T 1ndd_A            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSV-LHLVLA   72 (76)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCE-EEEEEC
T ss_pred             CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCE-EEEEEe
Confidence            8999987 8999999999999999999999999999999999999999999999999999997777 888754

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.70  E-value=2.2e-16  Score=125.34  Aligned_cols=76  Identities=32%  Similarity=0.594  Sum_probs=70.7

Q ss_pred             EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCC
Q 045158           85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRD  163 (252)
Q Consensus        85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~  163 (252)
                      |+|+|+ .+|+.+.+++++++||.+||++|++++|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|||++    |++|
T Consensus         1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~y~I~~gstI~Lvl----rl~G   75 (169)
T 3l0w_B            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL----RLRG   75 (169)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECC-TTSBGGGGTCCTTCEEEEEE----CCCC
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCcccc-CcCcHHHcCCCCCCEEEEEE----Eecc
Confidence            789999 58999999999999999999999999999999999999999996 89999999999999999999    7777


Q ss_pred             CC
Q 045158          164 NP  165 (252)
Q Consensus       164 ~~  165 (252)
                      |.
T Consensus        76 G~   77 (169)
T 3l0w_B           76 GG   77 (169)
T ss_dssp             --
T ss_pred             cc
Confidence            63

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.70  E-value=7e-17  Score=115.84  Aligned_cols=80  Identities=16%  Similarity=0.242  Sum_probs=71.1

Q ss_pred             CCcEEEEEEe-CCc--EEEEeeCCCccHHHHHHHHHHHh--CCCCccEEEEECceeccccccccccc--CCCCCCEEEEE
Q 045158           82 HDKIHIIIKF-PSR--KFNIDVDRTDTVRSLKEKIHIID--GTPIKRMLLFFSGIELDDEFRNLSEY--GIREFSEIIVF  154 (252)
Q Consensus        82 ~~~~~i~v~~-~g~--~~~l~v~~~~TV~~lK~~I~~~~--gip~~~q~L~~~g~~L~~d~~~L~~y--~i~~~s~i~l~  154 (252)
                      ...|+|+|+. +++  .+.+++++++||.+||++|++.+  |+|+++|+|+|+|+.|+ |+.+|++|  +|+++++|||+
T Consensus         5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~-D~~tL~~~~~~i~~~~~i~lv   83 (93)
T 1wgd_A            5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLL-DHQCLRDLLPKQEKRHVLHLV   83 (93)
T ss_dssp             SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECC-SSSCHHHHSCSSSCSEEEEEE
T ss_pred             CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECc-CcCCHHHHhcCCCCCCEEEEE
Confidence            3468999995 566  68888889999999999999998  99999999999999996 88999999  99999999999


Q ss_pred             eeeccccCCCCc
Q 045158          155 LKTMNRLRDNPP  166 (252)
Q Consensus       155 ~~~~~~~~~~~~  166 (252)
                      +    +++||++
T Consensus        84 ~----~~~gg~~   91 (93)
T 1wgd_A           84 C----NVKSGPS   91 (93)
T ss_dssp             C----CCCCCCC
T ss_pred             e----CCCCCCC
Confidence            8    6667643

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.70  E-value=1.2e-16  Score=115.78  Aligned_cols=75  Identities=32%  Similarity=0.589  Sum_probs=70.3

Q ss_pred             EEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCC
Q 045158           85 IHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRD  163 (252)
Q Consensus        85 ~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~  163 (252)
                      |+|+|+. +|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|. |+.+|++|+|.+|++|+|+.    +.+|
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~----~~~g   75 (98)
T 1yx5_B            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL----RLRG   75 (98)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEE----CCCC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECC-CCCCHHHcCCCCCCEEEEEE----eCCC
Confidence            7899995 7899999999999999999999999999999999999999996 88999999999999999998    5666


Q ss_pred             C
Q 045158          164 N  164 (252)
Q Consensus       164 ~  164 (252)
                      |
T Consensus        76 G   76 (98)
T 1yx5_B           76 G   76 (98)
T ss_dssp             C
T ss_pred             C
Confidence            6

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.70  E-value=1.4e-16  Score=112.11  Aligned_cols=75  Identities=27%  Similarity=0.425  Sum_probs=68.9

Q ss_pred             CCcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHH---hCCCCccEEEEECceecccccccccccCCCCCCEEEEEeee
Q 045158           82 HDKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHII---DGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKT  157 (252)
Q Consensus        82 ~~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~---~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~  157 (252)
                      +.+|+|+|+. .|+.+.+++++++||++||++|++.   .|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|+.++
T Consensus         3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i~~g~~i~l~~~~   81 (85)
T 2wyq_A            3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILS-DDVPIRDYRIDEKNFVVVMVTK   81 (85)
T ss_dssp             -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECC-TTSBGGGGCCCTTSEEEEEEC-
T ss_pred             CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECc-CCCCHHHcCCCCCCEEEEEEcC
Confidence            4579999995 7999999999999999999999998   899999999999999996 8899999999999999999853

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.69  E-value=1.1e-16  Score=115.84  Aligned_cols=86  Identities=28%  Similarity=0.394  Sum_probs=68.6

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCCCCccC
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPFLQSSF   79 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~~~~~~   79 (252)
                      |+|+|+. +|+.+.+++++++||.+||.+|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|..+       
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~-i~l~~~-------   72 (98)
T 1yx5_B            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR-------   72 (98)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCE-EEEEEC-------
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCE-EEEEEe-------
Confidence            9999977 8999999999999999999999999999999999999999999999999999997777 888764       


Q ss_pred             CcCCcEEEEEE-eCCcE
Q 045158           80 NQHDKIHIIIK-FPSRK   95 (252)
Q Consensus        80 ~~~~~~~i~v~-~~g~~   95 (252)
                       ..++.+++.+ .+|+.
T Consensus        73 -~~gG~~i~~~~v~~~~   88 (98)
T 1yx5_B           73 -LRGGRDPNSSSVDKLA   88 (98)
T ss_dssp             -CCCC------------
T ss_pred             -CCCCCcCccccCCCch
Confidence             2345677777 45443

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.69  E-value=3.7e-17  Score=119.12  Aligned_cols=78  Identities=21%  Similarity=0.287  Sum_probs=70.5

Q ss_pred             CcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCC---------------ccEEEEECceecccccccccccCCC
Q 045158           83 DKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPI---------------KRMLLFFSGIELDDEFRNLSEYGIR  146 (252)
Q Consensus        83 ~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~---------------~~q~L~~~g~~L~~d~~~L~~y~i~  146 (252)
                      ..|+|+|+ ++|++++++|.+++||++||++|+++.++|+               .+|+|+|+|+.|.+|+.+|++|||+
T Consensus         6 ~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~   85 (105)
T 1v2y_A            6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIR   85 (105)
T ss_dssp             CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCC
T ss_pred             CcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCC
Confidence            35999999 7999999999999999999999999999987               3579999999996577999999999


Q ss_pred             CCCEEEEEeeeccccCCC
Q 045158          147 EFSEIIVFLKTMNRLRDN  164 (252)
Q Consensus       147 ~~s~i~l~~~~~~~~~~~  164 (252)
                      +|++|||+.    |+++.
T Consensus        86 ~g~~l~lv~----~lr~~   99 (105)
T 1v2y_A           86 NRDEVSFIK----KLGQK   99 (105)
T ss_dssp             SSEEEEEEE----CSCSC
T ss_pred             CCCEEEEEe----hhccC
Confidence            999999998    56553

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.69  E-value=1e-16  Score=113.76  Aligned_cols=71  Identities=31%  Similarity=0.543  Sum_probs=66.0

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN   72 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~   72 (252)
                      |+|+|+. +|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|.++
T Consensus        10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~-i~l~~r   81 (88)
T 1sif_A           10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR   81 (88)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCE-EEEEC-
T ss_pred             eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCE-EEEEEe
Confidence            8999965 9999999999999999999999999999999999999999999999999999997776 888764

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.69  E-value=5.9e-17  Score=119.89  Aligned_cols=71  Identities=21%  Similarity=0.320  Sum_probs=64.3

Q ss_pred             CEEEEEe-CC-eEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccc-------cCCcEEEEEe
Q 045158            1 MRIIIVA-NG-HEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIV-------KEGTKIDLTI   71 (252)
Q Consensus         1 M~v~v~~-~g-~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~-------~~~t~i~l~~   71 (252)
                      |+|+|+. .+ .+++++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||.       ++++ |+|.+
T Consensus         1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~st-L~L~l   79 (118)
T 2fnj_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPAT-VGLAF   79 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEE-EEEEE
T ss_pred             CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCE-EEEEe
Confidence            7888844 44 5699999999999999999999999999999999999999999999999999       5667 88887


Q ss_pred             c
Q 045158           72 N   72 (252)
Q Consensus        72 ~   72 (252)
                      +
T Consensus        80 r   80 (118)
T 2fnj_B           80 R   80 (118)
T ss_dssp             B
T ss_pred             c
Confidence            6

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.69  E-value=1.2e-16  Score=115.34  Aligned_cols=74  Identities=26%  Similarity=0.419  Sum_probs=66.9

Q ss_pred             CCcEEEEEE-eCCcEEEE--eeCCCccHHHHHHHH-HHHhCCCCccEEEEECceecccccccccccCC-CCCCEEEEEee
Q 045158           82 HDKIHIIIK-FPSRKFNI--DVDRTDTVRSLKEKI-HIIDGTPIKRMLLFFSGIELDDEFRNLSEYGI-REFSEIIVFLK  156 (252)
Q Consensus        82 ~~~~~i~v~-~~g~~~~l--~v~~~~TV~~lK~~I-~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i-~~~s~i~l~~~  156 (252)
                      ...|+|+|+ +.|+.+++  ++++++||++||++| ++..|+|+++|+|+|+|+.|+ |+.+|++|+| ++|++|+|+++
T Consensus        17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~-D~~tL~dy~I~~~g~ti~lmvs   95 (98)
T 4a20_A           17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLH-DNLFLSDLKVTPANSTITVMIK   95 (98)
T ss_dssp             -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEEC-TTCBGGGSCCBTTBCEEEEEEC
T ss_pred             CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECc-CcCCHHHcCcCCCCCEEEEEEe
Confidence            567999999 58887666  667999999999999 888899999999999999996 8999999999 99999999985

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.69  E-value=1.8e-16  Score=108.92  Aligned_cols=71  Identities=32%  Similarity=0.541  Sum_probs=66.8

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN   72 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~   72 (252)
                      |+|+|+. +|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |++.++
T Consensus         1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~-i~l~~~   72 (76)
T 3a9j_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQREST-LHLVLR   72 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCE-EEEEEC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCE-EEEEEe
Confidence            8999976 8999999999999999999999999999999999999999999999999999997777 888764

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.69  E-value=2.3e-16  Score=108.83  Aligned_cols=71  Identities=25%  Similarity=0.403  Sum_probs=67.3

Q ss_pred             EEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           85 IHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        85 ~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      |+|+|+.+|+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|..+
T Consensus         5 m~i~vk~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~~   75 (77)
T 2bwf_A            5 LNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILK-DDQTVESYHIQDGHSVHLVKS   75 (77)
T ss_dssp             EEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEEC
T ss_pred             EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcC-CCCCHHHcCCCCCCEEEEEEc
Confidence            78889888889999999999999999999999999999999999999996 889999999999999999874

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.69  E-value=9.4e-17  Score=112.95  Aligned_cols=71  Identities=31%  Similarity=0.513  Sum_probs=66.8

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN   72 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~   72 (252)
                      |+|+|+. +|+++.+++++++||.+||++|++++++|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++
T Consensus         4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~-i~l~~r   75 (85)
T 3n3k_B            4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSA-LYLLLK   75 (85)
T ss_dssp             CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCE-EEEEEC
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCE-EEEEEe
Confidence            8999975 8999999999999999999999999999999999999999999999999999997777 888765

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.69  E-value=4.5e-17  Score=117.47  Aligned_cols=80  Identities=25%  Similarity=0.336  Sum_probs=73.1

Q ss_pred             CCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeecccc
Q 045158           82 HDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRL  161 (252)
Q Consensus        82 ~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~  161 (252)
                      ...|+|+|+..|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|++    |+
T Consensus        15 ~~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~----~~   89 (96)
T 1wx8_A           15 SRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILR-DQDILSQRGILDGSTVHVVV----RS   89 (96)
T ss_dssp             SCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECC-TTSCHHHHTCCTTEEEECCB----CC
T ss_pred             CCcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECC-CcCCHHHCCCCCCCEEEEEE----eC
Confidence            46799999955999999999999999999999999999999999999999996 88999999999999999998    56


Q ss_pred             CCCCc
Q 045158          162 RDNPP  166 (252)
Q Consensus       162 ~~~~~  166 (252)
                      +++++
T Consensus        90 ~~g~~   94 (96)
T 1wx8_A           90 HSGPS   94 (96)
T ss_dssp             SSCSS
T ss_pred             CCCCC
Confidence            66543

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.69  E-value=1.4e-16  Score=112.71  Aligned_cols=77  Identities=17%  Similarity=0.246  Sum_probs=70.3

Q ss_pred             CCccccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEe
Q 045158          164 NPPIRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVF  243 (252)
Q Consensus       164 ~~~~~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~  243 (252)
                      +.++..|+++|+.    ..|+++.++|++++||++||++|++++|+|++.|+|+|+|+.|+|+.+|++|+|++|++|+++
T Consensus         2 ~~~~~~m~i~Vk~----~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~   77 (87)
T 1wh3_A            2 SSGSSGIQVFVKN----PDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILS   77 (87)
T ss_dssp             CCCSSSEEEEEEE----TTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEE
T ss_pred             CCCCCCEEEEEEc----CCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEE
Confidence            3455668888863    578999999999999999999999999999999999999999999999999999999999997


Q ss_pred             c
Q 045158          244 K  244 (252)
Q Consensus       244 ~  244 (252)
                      .
T Consensus        78 ~   78 (87)
T 1wh3_A           78 K   78 (87)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.69  E-value=1.2e-16  Score=111.32  Aligned_cols=72  Identities=31%  Similarity=0.529  Sum_probs=66.8

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecC
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINP   73 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~   73 (252)
                      |+|+|+. +|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.++++ |++++++
T Consensus         8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~-i~l~~~~   80 (81)
T 2dzi_A            8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSK-LNLVVKP   80 (81)
T ss_dssp             EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBC-CEEECCC
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCE-EEEEEeC
Confidence            7889975 8999999999999999999999999999999999999999999999999999997877 8887653

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.69  E-value=7.2e-17  Score=118.54  Aligned_cols=73  Identities=19%  Similarity=0.391  Sum_probs=67.9

Q ss_pred             cEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeee
Q 045158           84 KIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKT  157 (252)
Q Consensus        84 ~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~  157 (252)
                      +|+|+|+ +.|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|+++.
T Consensus         1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~~i~~g~~i~lv~~~   74 (106)
T 3m62_B            1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQ-DSKTVSECGLKDGDQVVFMVSQ   74 (106)
T ss_dssp             --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECC-TTSBTTTTTCCTTCEEEEECCC
T ss_pred             CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECC-CcCCHHHcCCCCCCEEEEEEcC
Confidence            4889999 58999999999999999999999999999999999999999996 8899999999999999999953

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.69  E-value=1.3e-16  Score=113.02  Aligned_cols=79  Identities=15%  Similarity=0.211  Sum_probs=70.1

Q ss_pred             ccccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecC
Q 045158          166 PIRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKG  245 (252)
Q Consensus       166 ~~~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~  245 (252)
                      ....|+|+|+    .+.|+++.++|++++||++||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|++|++|+|+ -
T Consensus         9 ~~~~m~i~vk----~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~-~   83 (88)
T 3dbh_I            9 SGGSMLIKVK----TLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLV-L   83 (88)
T ss_dssp             CCCCEEEEEE----CTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEEC-C
T ss_pred             CCCcEEEEEE----cCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEE-E
Confidence            3345777776    4689999999999999999999999999999999999999999999999999999999999996 3


Q ss_pred             eecC
Q 045158          246 TVSR  249 (252)
Q Consensus       246 ~~~~  249 (252)
                      ++.|
T Consensus        84 rl~G   87 (88)
T 3dbh_I           84 RLRG   87 (88)
T ss_dssp             CCCC
T ss_pred             eCCC
Confidence            4433

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.69  E-value=1.2e-16  Score=115.64  Aligned_cols=71  Identities=34%  Similarity=0.540  Sum_probs=66.5

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN   72 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~   72 (252)
                      |+|+|+. +|+.+.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++
T Consensus        23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~-i~l~~r   94 (98)
T 4hcn_B           23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR   94 (98)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEE-EEEECB
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCE-EEEEEe
Confidence            8999975 9999999999999999999999999999999999999999999999999999997766 888764

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=1.3e-16  Score=111.25  Aligned_cols=74  Identities=23%  Similarity=0.425  Sum_probs=69.5

Q ss_pred             CCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           82 HDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        82 ~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      +..|+|+|+ ..|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|. |+.+|++|+|.+|++|+|+++
T Consensus         5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~~   79 (81)
T 2dzi_A            5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALA-DGKRLSDYSIGPNSKLNLVVK   79 (81)
T ss_dssp             SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECC-TTSBGGGGTCCSSBCCEEECC
T ss_pred             CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECC-CCCcHHHcCCCCCCEEEEEEe
Confidence            457999999 57899999999999999999999999999999999999999996 889999999999999999884

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.68  E-value=5.4e-17  Score=115.24  Aligned_cols=73  Identities=19%  Similarity=0.287  Sum_probs=66.6

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF   74 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~   74 (252)
                      |+|+|+. +|+.+.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+.+..
T Consensus         5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~-i~l~~~~~   78 (88)
T 2hj8_A            5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLST-VFMNLRLR   78 (88)
T ss_dssp             EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCE-EEEEEC--
T ss_pred             EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCE-EEEEEEcC
Confidence            7889976 7999999999999999999999999999999999999999999999999999997777 88887543

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.68  E-value=1.9e-16  Score=114.14  Aligned_cols=72  Identities=33%  Similarity=0.525  Sum_probs=67.4

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecC
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINP   73 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~   73 (252)
                      |+|+|+. +|+.+.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++.
T Consensus         2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~-i~l~~r~   74 (96)
T 3k9o_B            2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLRL   74 (96)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCE-EEEEECC
T ss_pred             cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCE-EEEEEEc
Confidence            8999976 8999999999999999999999999999999999999999999999999999997777 8888653

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.68  E-value=7.6e-17  Score=112.02  Aligned_cols=71  Identities=14%  Similarity=0.283  Sum_probs=66.2

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN   72 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~   72 (252)
                      |+|+|+. +|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+++++
T Consensus         4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~-i~l~~~   75 (79)
T 2uyz_B            4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDV-IEVYQE   75 (79)
T ss_dssp             EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEE-EEEEEC
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCE-EEEEEe
Confidence            6788875 8999999999999999999999999999999999999999999999999999997777 888764

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.68  E-value=1.8e-16  Score=111.48  Aligned_cols=71  Identities=32%  Similarity=0.477  Sum_probs=66.7

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN   72 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~   72 (252)
                      |+|+|+. +|+++.+++++++||.+||++|++++++|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|.++
T Consensus         4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~-l~l~~r   75 (85)
T 3mtn_B            4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWST-LFLLLR   75 (85)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCE-EEEECC
T ss_pred             EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCE-EEEEEE
Confidence            7899976 8999999999999999999999999999999999999999999999999999997777 888764

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.68  E-value=1.6e-16  Score=115.96  Aligned_cols=80  Identities=13%  Similarity=0.260  Sum_probs=69.8

Q ss_pred             CCcEEEEEEe-CC----cEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           82 HDKIHIIIKF-PS----RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        82 ~~~~~i~v~~-~g----~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      ..+|+|+|+. .+    +.+.++|++++||++||++|++.+|+|+++|+|+|+|+.|+||..+|++|+|++|++|+|+. 
T Consensus         5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~-   83 (102)
T 1v5o_A            5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQ-   83 (102)
T ss_dssp             SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECB-
T ss_pred             CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEE-
Confidence            3469999995 33    78999999999999999999999999999999999999997343799999999999999998 


Q ss_pred             eccccCCCC
Q 045158          157 TMNRLRDNP  165 (252)
Q Consensus       157 ~~~~~~~~~  165 (252)
                         +.++|+
T Consensus        84 ---~~~gg~   89 (102)
T 1v5o_A           84 ---KDNVGL   89 (102)
T ss_dssp             ---CCCCCC
T ss_pred             ---CCCCCC
Confidence               455553

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.67  E-value=5.5e-17  Score=120.18  Aligned_cols=81  Identities=22%  Similarity=0.168  Sum_probs=74.0

Q ss_pred             CCcCCcEEEEEEe----CCcEEEEeeCC-CccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEE
Q 045158           79 FNQHDKIHIIIKF----PSRKFNIDVDR-TDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIV  153 (252)
Q Consensus        79 ~~~~~~~~i~v~~----~g~~~~l~v~~-~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l  153 (252)
                      ....+.|+|+|+.    .|+.+.+++++ ++||.+||++|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|.+|++|+|
T Consensus        22 ~~~~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~-D~~tL~~y~I~~g~~l~l  100 (111)
T 1we6_A           22 AQHPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLK-DNMSLAHYNVGAGEILTL  100 (111)
T ss_dssp             HHCCSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCC-TTSBTTTTTCSSSCEEEE
T ss_pred             HhCCCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECC-CCCcHHHCCCCCCCEEEE
Confidence            3456789999994    57889999998 99999999999999999999999999999996 889999999999999999


Q ss_pred             EeeeccccCCC
Q 045158          154 FLKTMNRLRDN  164 (252)
Q Consensus       154 ~~~~~~~~~~~  164 (252)
                      ++    |++||
T Consensus       101 ~~----r~~GG  107 (111)
T 1we6_A          101 SL----RERSG  107 (111)
T ss_dssp             EC----SSCCS
T ss_pred             EE----EcCCC
Confidence            99    77776

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.67  E-value=2.5e-16  Score=113.33  Aligned_cols=66  Identities=23%  Similarity=0.238  Sum_probs=60.3

Q ss_pred             CcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCCC
Q 045158           93 SRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDN  164 (252)
Q Consensus        93 g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~~  164 (252)
                      ++.++++|++++||.+||++|++++|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|++ +    +++|.
T Consensus        29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~-D~~TL~~y~I~~gsti~v-l----~lrg~   94 (100)
T 1wju_A           29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQ-LGKTLEEQGVAHNVKAMV-L----ELKQS   94 (100)
T ss_dssp             SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECC-TTSBHHHHTCCSSEEEEE-E----CCCCC
T ss_pred             CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECC-CCCcHHHcCCCCCCEEEE-E----EECCC
Confidence            568999999999999999999999999999999999999996 999999999999999954 4    56554

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.67  E-value=1.2e-16  Score=114.95  Aligned_cols=64  Identities=17%  Similarity=0.061  Sum_probs=60.7

Q ss_pred             CceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCe
Q 045158          183 GASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGT  246 (252)
Q Consensus       183 g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~  246 (252)
                      +++++++|++++||++||++|++++|+|+++|+|+|+|++|+|++||++|+|++|++|.++.-+
T Consensus        29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~lr   92 (100)
T 1wju_A           29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELK   92 (100)
T ss_dssp             SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCC
T ss_pred             CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEEEC
Confidence            7899999999999999999999999999999999999999999999999999999999877443

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.67  E-value=3.9e-17  Score=118.86  Aligned_cols=93  Identities=27%  Similarity=0.381  Sum_probs=66.1

Q ss_pred             CCCccccccccCCcEEEEEecCCCCccCCcCCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECce
Q 045158           52 GLDMEDYPIVKEGTKIDLTINPFLQSSFNQHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGI  131 (252)
Q Consensus        52 ~~~L~~~~i~~~~t~i~l~~~~~~~~~~~~~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~  131 (252)
                      ...+++|.|.  +| .+|.        +...-.+.|+|+.+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+
T Consensus         7 ~~~~~~~~~~--~t-~~l~--------l~~~m~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk   75 (101)
T 3m63_B            7 HHPMSDYDIP--TT-ENLY--------FQGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGK   75 (101)
T ss_dssp             ---------------------------------CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTE
T ss_pred             cCCccccCCC--cc-eeec--------ccCCcEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCE
Confidence            3468899986  34 4333        22222356777778889999999999999999999999999999999999999


Q ss_pred             ecccccccccccCCCCCCEEEEEee
Q 045158          132 ELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus       132 ~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      .|+ |+.+|++|+|++|++|+|+.+
T Consensus        76 ~L~-D~~tL~~~gI~~g~tI~lv~~   99 (101)
T 3m63_B           76 ILK-DDQTVESYHIQDGHSVHLVKS   99 (101)
T ss_dssp             ECC-TTSBTTTTTCCTTEEEEECCC
T ss_pred             ECC-CcCcHHHCCCCCCCEEEEEeC
Confidence            996 899999999999999999863

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.67  E-value=3.6e-16  Score=113.58  Aligned_cols=74  Identities=23%  Similarity=0.334  Sum_probs=68.4

Q ss_pred             cCCcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           81 QHDKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        81 ~~~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      .+..|+|+|+. .|+ +.+++++++||.+||++|++..|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|+++
T Consensus        19 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~ygI~~gstI~l~~r   93 (100)
T 1yqb_A           19 SPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILK-DPDSLAQCGVRDGLTVHLVIK   93 (100)
T ss_dssp             CTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBHHHHTCCTTCEEEEEEC
T ss_pred             CCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECC-CcCcHHHCCCCCCCEEEEEEc
Confidence            45679999995 565 799999999999999999999999999999999999996 889999999999999999983

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.67  E-value=1.7e-16  Score=127.60  Aligned_cols=78  Identities=32%  Similarity=0.564  Sum_probs=73.6

Q ss_pred             CCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccc
Q 045158           82 HDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNR  160 (252)
Q Consensus        82 ~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~  160 (252)
                      +-.|+|+|+ .+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|+++++|+|++    |
T Consensus       103 ~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~-D~~tL~dygI~~gstI~Lvl----r  177 (189)
T 3q3f_A          103 HYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL----R  177 (189)
T ss_dssp             CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECC-TTCBGGGGTCCTTCEEEECC----C
T ss_pred             ccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECC-CCCCHHHCCCCCCCEEEEEE----E
Confidence            446999999 58999999999999999999999999999999999999999996 88999999999999999999    7


Q ss_pred             cCCC
Q 045158          161 LRDN  164 (252)
Q Consensus       161 ~~~~  164 (252)
                      ++||
T Consensus       178 lrGG  181 (189)
T 3q3f_A          178 LRGG  181 (189)
T ss_dssp             CCCC
T ss_pred             cCCC
Confidence            8887

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.67  E-value=1.8e-16  Score=113.90  Aligned_cols=73  Identities=26%  Similarity=0.389  Sum_probs=65.6

Q ss_pred             CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCC-CCccccccccCCcEEEEEecCC
Q 045158            1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDG-LDMEDYPIVKEGTKIDLTINPF   74 (252)
Q Consensus         1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~-~~L~~~~i~~~~t~i~l~~~~~   74 (252)
                      |+|+|+..+.+++++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+ .+|++|+|.++++ |+|+++..
T Consensus        16 ~~I~Vk~~~~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gst-l~lv~r~~   89 (94)
T 2kan_A           16 IHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSE-IVVFLKSI   89 (94)
T ss_dssp             EEEEEECSSCEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEE-EEEEECCC
T ss_pred             EEEEEEcCCcEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCE-EEEEEeCC
Confidence            6888977433899999999999999999999999999999999999999999 9999999997766 88887543

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.67  E-value=6.5e-16  Score=112.40  Aligned_cols=77  Identities=23%  Similarity=0.355  Sum_probs=70.2

Q ss_pred             CcCCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeee
Q 045158           80 NQHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKT  157 (252)
Q Consensus        80 ~~~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~  157 (252)
                      .....|+|+|+..|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|+.++
T Consensus        21 ~~~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~gI~~g~~I~l~~~~   97 (101)
T 2klc_A           21 GHPKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILK-DQDTLSQHGIHDGLTVHLVIKT   97 (101)
T ss_dssp             --CCCEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEEC-TTCCTGGGTCCTTCEEEEEECC
T ss_pred             CCCCeEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECC-CcCcHHHcCCCCCCEEEEEEcC
Confidence            3456799999955889999999999999999999999999999999999999996 8899999999999999999853

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.66  E-value=1.7e-16  Score=113.74  Aligned_cols=70  Identities=21%  Similarity=0.266  Sum_probs=65.7

Q ss_pred             CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158            1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN   72 (252)
Q Consensus         1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~   72 (252)
                      |+|+|+. |+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++
T Consensus        20 m~I~Vk~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gst-I~lv~r   89 (93)
T 2l7r_A           20 MQLFVRA-QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTT-LEVAGR   89 (93)
T ss_dssp             CEEEEES-SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCE-EEEECC
T ss_pred             EEEEEEC-CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCE-EEEEEe
Confidence            7899987 899999999999999999999999999999999999999999999999999997777 888754

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.66  E-value=3.1e-18  Score=133.36  Aligned_cols=114  Identities=25%  Similarity=0.440  Sum_probs=14.8

Q ss_pred             EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCC
Q 045158           85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRD  163 (252)
Q Consensus        85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~  163 (252)
                      |+|+|+ .+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|++    |++|
T Consensus         1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~dygI~~gstL~Lvl----rl~G   75 (152)
T 3u5c_f            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL----RLRG   75 (152)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEcc-ccCcHHHcCCCCCCEEEEEe----eccC
Confidence            689999 57999999999999999999999999999999999999999996 88999999999999999999    7888


Q ss_pred             CCccccceeeEEeeeeccCCceEEE------EecCCCcHHHHHHHH
Q 045158          164 NPPIRRLSFKVQTSSSLLNGASIPL------EMQDSSTVNELRHLL  203 (252)
Q Consensus       164 ~~~~~~~~i~v~~~~~~~~g~~~~l------~v~~~~tV~~Lk~~i  203 (252)
                      |+..++-..+..+.......+...+      .|+.+.+|..+++.+
T Consensus        76 GgKkrkKk~~t~Pkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  121 (152)
T 3u5c_f           76 GGKKRKXXXXXXXXXXXXXXXXXXXXVLSYYKVDAEGKVTKLRREC  121 (152)
T ss_dssp             ------CCCCCCCSCCCCCCCCCCCCCCCCSEECSSSCEECCSCBC
T ss_pred             CCcCcccccccccccccccccccccceeeEEEEccCCeEEECcCcC
Confidence            8655444444433322233333333      455555665555443

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.66  E-value=2.9e-16  Score=116.21  Aligned_cols=70  Identities=19%  Similarity=0.201  Sum_probs=63.0

Q ss_pred             EEEEEE--eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCC-------CCCEEEEEe
Q 045158           85 IHIIIK--FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIR-------EFSEIIVFL  155 (252)
Q Consensus        85 ~~i~v~--~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~-------~~s~i~l~~  155 (252)
                      |+++++  ....++.++|++++||++||++|+++.|+|+++|+|+|+|+.|+ |+++|++|||+       ++++|+|.+
T Consensus         1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~Le-D~~TLsdy~I~~~~a~~q~~stL~L~l   79 (118)
T 2fnj_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLD-DGKTLGECGFTSQTARPQAPATVGLAF   79 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBHHHHTCCTTTSBTTBCEEEEEEE
T ss_pred             CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECC-CCCCHHHcCcccccccCCCCCEEEEEe
Confidence            445555  33356999999999999999999999999999999999999995 99999999999       799999999

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.66  E-value=4.1e-16  Score=110.75  Aligned_cols=73  Identities=22%  Similarity=0.416  Sum_probs=66.9

Q ss_pred             CEEEEEe-CC-eEEEE-EecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158            1 MRIIIVA-NG-HEFVL-EVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF   74 (252)
Q Consensus         1 M~v~v~~-~g-~~~~l-~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~   74 (252)
                      |+|+|+. +| +++.+ ++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++..
T Consensus         8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~-i~l~~~~~   83 (89)
T 1wy8_A            8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDI-IQLLVRPD   83 (89)
T ss_dssp             EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCE-EEEEECCC
T ss_pred             EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCE-EEEEEeCC
Confidence            7899976 78 79999 599999999999999999999999999999999999999999999997777 99887644

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.66  E-value=1.7e-16  Score=113.07  Aligned_cols=74  Identities=16%  Similarity=0.252  Sum_probs=68.8

Q ss_pred             CEEEEEeCCeEEEE-EecCCCcHHHHHHHHHHHhCCCCCceEEE---EcCeecCCCCCccccccccCCcEEEEEecCCC
Q 045158            1 MRIIIVANGHEFVL-EVGLQEPVLEIKRKIEQIFNIPATSQTLA---VSGWELVDGLDMEDYPIVKEGTKIDLTINPFL   75 (252)
Q Consensus         1 M~v~v~~~g~~~~l-~v~~~~tV~~lK~~I~~~~~i~~~~q~L~---~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~~   75 (252)
                      |+|+|+..|+.+.+ ++++++||.+||++|++++|+|+++|+|+   |+|+.|+|+.+|++|+|.++++ |+|+.++.+
T Consensus         8 m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~-l~l~~~~~~   85 (90)
T 1v5t_A            8 LPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTK-IMMMGTRES   85 (90)
T ss_dssp             CCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEE-EEEECCCSS
T ss_pred             EEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCE-EEEEecCcc
Confidence            78999989999999 99999999999999999999999999999   9999999999999999997766 999876553

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.66  E-value=4e-16  Score=114.59  Aligned_cols=75  Identities=21%  Similarity=0.322  Sum_probs=70.0

Q ss_pred             cCCcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           81 QHDKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        81 ~~~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      ....|+|+|+. .|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|. |+.+|++|+|.+|++|+|+++
T Consensus        20 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~ygI~~g~ti~lv~~   95 (106)
T 1ttn_A           20 SGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLT-DKMKFEELKIPKDYVVQVIVS   95 (106)
T ss_dssp             -CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECC-TTSHHHHCCCSSSCEEEEECC
T ss_pred             CCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEe
Confidence            35579999994 8999999999999999999999999999999999999999996 889999999999999999984

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.66  E-value=6.1e-16  Score=116.78  Aligned_cols=80  Identities=21%  Similarity=0.315  Sum_probs=69.5

Q ss_pred             CCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeecccc
Q 045158           82 HDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRL  161 (252)
Q Consensus        82 ~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~  161 (252)
                      ...|+|+|+..|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|+.    +.
T Consensus        30 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~dygI~~gstI~lv~----~~  104 (125)
T 1j8c_A           30 PKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILK-DQDTLIQHGIHDGLTVHLVI----KR  104 (125)
T ss_dssp             CCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEES-TTSCGGGTTCSSSEEEEEEE----C-
T ss_pred             CCcEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEe----cc
Confidence            45799999954889999999999999999999999999999999999999996 88999999999999999998    55


Q ss_pred             CCCCc
Q 045158          162 RDNPP  166 (252)
Q Consensus       162 ~~~~~  166 (252)
                      ++|+.
T Consensus       105 ~gg~~  109 (125)
T 1j8c_A          105 DPNSS  109 (125)
T ss_dssp             -----
T ss_pred             CCCCC
Confidence            55543

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.66  E-value=4.4e-16  Score=114.77  Aligned_cols=71  Identities=18%  Similarity=0.228  Sum_probs=64.4

Q ss_pred             EEEEEEe--CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCC-------CCEEEEEe
Q 045158           85 IHIIIKF--PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIRE-------FSEIIVFL  155 (252)
Q Consensus        85 ~~i~v~~--~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~-------~s~i~l~~  155 (252)
                      |.+|++.  ...++.+++++++||.+||++|+++.|+|+++|+|+|+|+.|+ |++||++|||++       +++|+|.+
T Consensus         1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~Le-D~kTL~dy~I~~~ta~~q~~atl~Lvl   79 (118)
T 4ajy_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLD-DGKTLGECGFTSQTARPQAPATVGLAF   79 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTTTTTCCGGGSBTTBCEEEEEEE
T ss_pred             CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECC-CcCCHHHcCCCcCcccCCCCCEEEEEE
Confidence            4566663  4557999999999999999999999999999999999999995 999999999999       99999999


Q ss_pred             e
Q 045158          156 K  156 (252)
Q Consensus       156 ~  156 (252)
                      +
T Consensus        80 r   80 (118)
T 4ajy_B           80 R   80 (118)
T ss_dssp             C
T ss_pred             e
Confidence            3

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.66  E-value=2e-16  Score=114.34  Aligned_cols=71  Identities=14%  Similarity=0.283  Sum_probs=66.6

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN   72 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~   72 (252)
                      |+|+|+. +|+.+.++|++++||.+||.+|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++
T Consensus        22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~-I~l~~~   93 (97)
T 1wyw_B           22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDV-IEVYQE   93 (97)
T ss_dssp             EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCE-EEEEES
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCE-EEEEEe
Confidence            6888875 8999999999999999999999999999999999999999999999999999997877 888764

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.66  E-value=2.1e-16  Score=113.92  Aligned_cols=72  Identities=17%  Similarity=0.208  Sum_probs=67.1

Q ss_pred             CEEEEEeCCeEE-EEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158            1 MRIIIVANGHEF-VLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF   74 (252)
Q Consensus         1 M~v~v~~~g~~~-~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~   74 (252)
                      |+|+|+..|+.+ .+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|+|.++++ |+|+.++.
T Consensus         8 m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~-i~l~~~~~   80 (96)
T 1wgg_A            8 YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMT-VLMMGSAD   80 (96)
T ss_dssp             EEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCE-EECCCCCC
T ss_pred             EEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCE-EEEEecch
Confidence            688898899999 6999999999999999999999999999999999999999 999999997776 99887765

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.66  E-value=6e-16  Score=109.06  Aligned_cols=70  Identities=19%  Similarity=0.258  Sum_probs=63.7

Q ss_pred             EEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecC
Q 045158            3 IIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINP   73 (252)
Q Consensus         3 v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~   73 (252)
                      +.++.+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+.++
T Consensus        15 ~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~-l~l~~s~   84 (85)
T 2kd0_A           15 LTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAK-LMLMASQ   84 (85)
T ss_dssp             EEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEE-EEEECCC
T ss_pred             EEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCE-EEEEEeC
Confidence            344679999999999999999999999999999999999999999999999999999997766 8887654

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.65  E-value=1.8e-15  Score=120.07  Aligned_cols=71  Identities=34%  Similarity=0.540  Sum_probs=67.5

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN   72 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~   72 (252)
                      |+|+|+. +|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |||.++
T Consensus         1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gst-I~Lvlr   72 (169)
T 3l0w_B            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR   72 (169)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCE-EEEEEC
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCE-EEEEEE
Confidence            9999976 9999999999999999999999999999999999999999999999999999997777 999875

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.65  E-value=6.4e-16  Score=112.44  Aligned_cols=73  Identities=19%  Similarity=0.188  Sum_probs=67.2

Q ss_pred             CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158            1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF   74 (252)
Q Consensus         1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~   74 (252)
                      |+|+|+..|+.+.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.++++ |+|+.+.+
T Consensus        26 m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~-I~l~~~~~   98 (101)
T 2klc_A           26 MKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLT-VHLVIKTQ   98 (101)
T ss_dssp             EEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCE-EEEEECCS
T ss_pred             EEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCE-EEEEEcCC
Confidence            68888776889999999999999999999999999999999999999999999999999997776 88887644

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.65  E-value=3.1e-16  Score=115.12  Aligned_cols=73  Identities=21%  Similarity=0.330  Sum_probs=68.4

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF   74 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~   74 (252)
                      |+|+|+. +|+.+.++|++++||.+||.+|+.++|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++.+
T Consensus        24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~t-i~lv~~~~   97 (106)
T 1ttn_A           24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYV-VQVIVSQP   97 (106)
T ss_dssp             EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCE-EEEECCCS
T ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCE-EEEEEeCC
Confidence            7889976 8999999999999999999999999999999999999999999999999999997777 99998755

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.65  E-value=5.5e-16  Score=114.89  Aligned_cols=75  Identities=11%  Similarity=0.108  Sum_probs=65.2

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHH------HhCC--CCCceEEEEcCeecCCCCCccccccccCC-cEEEEE
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQ------IFNI--PATSQTLAVSGWELVDGLDMEDYPIVKEG-TKIDLT   70 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~------~~~i--~~~~q~L~~~g~~L~d~~~L~~~~i~~~~-t~i~l~   70 (252)
                      |+|+|+. +|++++++|++++||.+||++|++      ++++  |+++|+|+|+|+.|+|+.+|++|+|..++ +.+||+
T Consensus        17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv   96 (116)
T 1wgh_A           17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV   96 (116)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred             EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence            6888875 899999999999999999999999      6675  69999999999999999999999997443 348888


Q ss_pred             ecCCC
Q 045158           71 INPFL   75 (252)
Q Consensus        71 ~~~~~   75 (252)
                      ++...
T Consensus        97 lr~~~  101 (116)
T 1wgh_A           97 ARETL  101 (116)
T ss_dssp             ECSSC
T ss_pred             ccCCC
Confidence            87553

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=99.46  E-value=9.8e-18  Score=115.62  Aligned_cols=71  Identities=20%  Similarity=0.397  Sum_probs=67.2

Q ss_pred             EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      |+|+|+ .+|+++.+++++++||++||++|++..|+|+++|+|+|+|+.|+ |+.+|++|+|.+|++|+|+++
T Consensus         1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~r   72 (76)
T 3b1l_X            1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELP-NHLTVQNCDLEQQSIVHIVQR   72 (76)
Confidence            789999 47899999999999999999999999999999999999999996 889999999999999999983

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.65  E-value=1.3e-15  Score=111.87  Aligned_cols=75  Identities=23%  Similarity=0.336  Sum_probs=68.7

Q ss_pred             CcCCcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           80 NQHDKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        80 ~~~~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      .....|+|+|+. .++ +.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|.+|++|+|+++
T Consensus        13 ~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~gi~~g~~i~l~~~   88 (106)
T 1wx7_A           13 QDPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILK-DPDSLAQCGVRDGLTVHLVIK   88 (106)
T ss_dssp             CCSSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECC-TTSCHHHHTCCTTEEEEEEEC
T ss_pred             CCCceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECC-CcCcHHHcCCCCCCEEEEEEc
Confidence            345679999995 555 799999999999999999999999999999999999996 889999999999999999994

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.65  E-value=5.7e-16  Score=114.64  Aligned_cols=71  Identities=34%  Similarity=0.543  Sum_probs=66.5

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN   72 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~   72 (252)
                      |+|+|+. +|+.+.++|++++||.+||.+|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++
T Consensus        36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~-I~l~~r  107 (111)
T 3vdz_A           36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR  107 (111)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCE-EEEEEC
T ss_pred             EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCE-EEEEEe
Confidence            7899975 8999999999999999999999999999999999999999999999999999997777 888764

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.65  E-value=1e-15  Score=107.90  Aligned_cols=74  Identities=22%  Similarity=0.350  Sum_probs=68.4

Q ss_pred             CCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           82 HDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        82 ~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      .+.+.+.++++|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|+.+
T Consensus        10 ~~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~l~l~~s   83 (85)
T 2kd0_A           10 HSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLV-ETSTLKQSDVGSGAKLMLMAS   83 (85)
T ss_dssp             CCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECC-TTCBTTTTTCCTTEEEEEECC
T ss_pred             CCcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECC-CcCCHHHCCCCCCCEEEEEEe
Confidence            45667777789999999999999999999999999999999999999999996 889999999999999999864

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.64  E-value=1.3e-16  Score=116.13  Aligned_cols=72  Identities=26%  Similarity=0.373  Sum_probs=65.1

Q ss_pred             CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecC
Q 045158            1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINP   73 (252)
Q Consensus         1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~   73 (252)
                      |+|+|+.+|+.+.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||.++++ |+|+.+.
T Consensus        29 i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~t-I~lv~~~  100 (101)
T 3m63_B           29 LNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHS-VHLVKSQ  100 (101)
T ss_dssp             CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEE-EEECCCC
T ss_pred             EEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCE-EEEEeCC
Confidence            34566668999999999999999999999999999999999999999999999999999997766 8887653

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.64  E-value=1.3e-15  Score=113.39  Aligned_cols=80  Identities=24%  Similarity=0.365  Sum_probs=71.0

Q ss_pred             cCCcEEEEEEe-----------CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCC
Q 045158           81 QHDKIHIIIKF-----------PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFS  149 (252)
Q Consensus        81 ~~~~~~i~v~~-----------~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s  149 (252)
                      ..+.+.|.|+.           +|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+ |+.+|++|+|.+|+
T Consensus        22 ~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~-D~~tL~~y~i~~g~  100 (115)
T 1we7_A           22 NKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIK-DSNSLAYYNMASGA  100 (115)
T ss_dssp             CCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEEC-TTSBHHHHTCCSSC
T ss_pred             CCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECC-CCCCHHHCCCCCCC
Confidence            34566677774           2578999999999999999999999999999999999999996 88999999999999


Q ss_pred             EEEEEeeeccccCCCC
Q 045158          150 EIIVFLKTMNRLRDNP  165 (252)
Q Consensus       150 ~i~l~~~~~~~~~~~~  165 (252)
                      +|+|++    |++||.
T Consensus       101 ~i~lv~----rl~GGk  112 (115)
T 1we7_A          101 VIHLAL----KERSGP  112 (115)
T ss_dssp             EEEEEE----CCCSCC
T ss_pred             EEEEEE----EcCCCC
Confidence            999999    777874

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.64  E-value=5.4e-16  Score=111.17  Aligned_cols=73  Identities=19%  Similarity=0.217  Sum_probs=65.3

Q ss_pred             CEEEEEe-CCe--EEEEEecCCCcHHHHHHHHHHHh--CCCCCceEEEEcCeecCCCCCcccc--ccccCCcEEEEEecC
Q 045158            1 MRIIIVA-NGH--EFVLEVGLQEPVLEIKRKIEQIF--NIPATSQTLAVSGWELVDGLDMEDY--PIVKEGTKIDLTINP   73 (252)
Q Consensus         1 M~v~v~~-~g~--~~~l~v~~~~tV~~lK~~I~~~~--~i~~~~q~L~~~g~~L~d~~~L~~~--~i~~~~t~i~l~~~~   73 (252)
                      |+|+|+. +++  .+++++++++||.+||++|++++  ++|+++|+|+|+|+.|+|+.+|++|  +|.++++ |||+++.
T Consensus         8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~-i~lv~~~   86 (93)
T 1wgd_A            8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHV-LHLVCNV   86 (93)
T ss_dssp             CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEE-EEEECCC
T ss_pred             EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCE-EEEEeCC
Confidence            7899976 666  67888889999999999999998  9999999999999999999999999  9997766 9998754


Q ss_pred             C
Q 045158           74 F   74 (252)
Q Consensus        74 ~   74 (252)
                      .
T Consensus        87 ~   87 (93)
T 1wgd_A           87 K   87 (93)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.64  E-value=5.7e-16  Score=110.34  Aligned_cols=75  Identities=19%  Similarity=0.342  Sum_probs=70.1

Q ss_pred             CCcEEEEEEeCCcEEEE-eeCCCccHHHHHHHHHHHhCCCCccEEEE---ECceecccccccccccCCCCCCEEEEEeee
Q 045158           82 HDKIHIIIKFPSRKFNI-DVDRTDTVRSLKEKIHIIDGTPIKRMLLF---FSGIELDDEFRNLSEYGIREFSEIIVFLKT  157 (252)
Q Consensus        82 ~~~~~i~v~~~g~~~~l-~v~~~~TV~~lK~~I~~~~gip~~~q~L~---~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~  157 (252)
                      ...|+|+|++.|+.+.+ ++++++||.+||++|++.+|+|+++|+|+   |+|+.|. |+.+|++|+|++|++|+|+..+
T Consensus         5 ~~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~-D~~~L~~~~i~~g~~l~l~~~~   83 (90)
T 1v5t_A            5 SSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAE-NDVKLGALKLKPNTKIMMMGTR   83 (90)
T ss_dssp             CCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECC-TTSBHHHHTCCTTEEEEEECCC
T ss_pred             CceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcC-CCCCHHHcCCCCCCEEEEEecC
Confidence            34689999999999999 99999999999999999999999999999   9999995 8899999999999999998753

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=99.44  E-value=1.6e-17  Score=114.51  Aligned_cols=71  Identities=17%  Similarity=0.333  Sum_probs=66.4

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN   72 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~   72 (252)
                      |+|+|+. +|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++
T Consensus         1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~-i~l~~r   72 (76)
T 3b1l_X            1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSI-VHIVQR   72 (76)
Confidence            8999976 8999999999999999999999999999999999999999999999999999997777 887754

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.63  E-value=2.4e-15  Score=111.43  Aligned_cols=75  Identities=9%  Similarity=0.092  Sum_probs=66.7

Q ss_pred             CCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHH------HhCC--CCccEEEEECceecccccccccccCCCCC--CE
Q 045158           82 HDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHI------IDGT--PIKRMLLFFSGIELDDEFRNLSEYGIREF--SE  150 (252)
Q Consensus        82 ~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~------~~gi--p~~~q~L~~~g~~L~~d~~~L~~y~i~~~--s~  150 (252)
                      ...|+|+|+ ++|++++++|++++||++||++|++      ++|+  |+++|+|+|+|+.|+ |+.+|++|+|+.+  ++
T Consensus        14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~Le-D~~TL~~y~I~~~~~~t   92 (116)
T 1wgh_A           14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLH-GNVTLGALKLPFGKTTV   92 (116)
T ss_dssp             SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEEC-SSCBTTTTTCCSSCEEE
T ss_pred             CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCC-CCCcHHHcCCCCCCceE
Confidence            456999999 6899999999999999999999999      5575  699999999999996 9999999999866  67


Q ss_pred             EEEEeee
Q 045158          151 IIVFLKT  157 (252)
Q Consensus       151 i~l~~~~  157 (252)
                      +||++++
T Consensus        93 lhLvlr~   99 (116)
T 1wgh_A           93 MHLVARE   99 (116)
T ss_dssp             EEEEECS
T ss_pred             EEEEccC
Confidence            8888843

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.63  E-value=3.8e-16  Score=125.49  Aligned_cols=71  Identities=32%  Similarity=0.506  Sum_probs=66.7

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN   72 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~   72 (252)
                      |+|+|+. +|++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++
T Consensus       106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gst-I~Lvlr  177 (189)
T 3q3f_A          106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR  177 (189)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCE-EEECCC
T ss_pred             eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCE-EEEEEE
Confidence            8999976 8999999999999999999999999999999999999999999999999999997777 888753

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.63  E-value=2.1e-15  Score=107.85  Aligned_cols=76  Identities=20%  Similarity=0.334  Sum_probs=69.1

Q ss_pred             CCcEEEEEEeCCcEEEEeeCCC-----ccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           82 HDKIHIIIKFPSRKFNIDVDRT-----DTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        82 ~~~~~i~v~~~g~~~~l~v~~~-----~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      ..+|.|+|+..++.+.++++++     +||.+||++|++.+|+|+++|+|+|+|+.|.||+.+|++|+|++|++|+|+.+
T Consensus         5 ~~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~   84 (92)
T 1wxv_A            5 SSGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK   84 (92)
T ss_dssp             CSSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred             CCeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence            3479999998888999999995     99999999999999999999999999999974367999999999999999885


Q ss_pred             e
Q 045158          157 T  157 (252)
Q Consensus       157 ~  157 (252)
                      +
T Consensus        85 ~   85 (92)
T 1wxv_A           85 K   85 (92)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.63  E-value=1.8e-15  Score=113.19  Aligned_cols=79  Identities=18%  Similarity=0.272  Sum_probs=69.0

Q ss_pred             CCcEEEEEE-eCCcEE-EEeeCCCccHHHHHHHH-----HHHhCCCC--ccEEEEECceecccccccccccCCCCC----
Q 045158           82 HDKIHIIIK-FPSRKF-NIDVDRTDTVRSLKEKI-----HIIDGTPI--KRMLLFFSGIELDDEFRNLSEYGIREF----  148 (252)
Q Consensus        82 ~~~~~i~v~-~~g~~~-~l~v~~~~TV~~lK~~I-----~~~~gip~--~~q~L~~~g~~L~~d~~~L~~y~i~~~----  148 (252)
                      ...|+|+|+ ++|+.+ ++++++++||++||++|     +++.|+|+  ++|+|+|+|+.|+ |+.+|++|+|+.|    
T Consensus        14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~Le-D~~TLsdy~I~~~~~~~   92 (126)
T 1se9_A           14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLE-NSKTVKDYRSPVSNLAG   92 (126)
T ss_dssp             CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECC-TTSBGGGGSCCTTSCTT
T ss_pred             cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECc-CCCcHHHcCCCcCCccC
Confidence            356999999 588887 79999999999999999     45668986  8999999999996 9999999999998    


Q ss_pred             --CEEEEEeeeccccCCCC
Q 045158          149 --SEIIVFLKTMNRLRDNP  165 (252)
Q Consensus       149 --s~i~l~~~~~~~~~~~~  165 (252)
                        +++||++    |++++.
T Consensus        93 ~v~tmhlVl----rl~g~~  107 (126)
T 1se9_A           93 AVTTMHVII----QAPVTE  107 (126)
T ss_dssp             CCEEEEEEE----CCCSSC
T ss_pred             CcEEEEEEe----ccCCcc
Confidence              7899998    666653

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.63  E-value=1.5e-15  Score=110.19  Aligned_cols=70  Identities=11%  Similarity=0.083  Sum_probs=63.0

Q ss_pred             CEEEEEe-C--CeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccc-cCCcEEEEEe
Q 045158            1 MRIIIVA-N--GHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIV-KEGTKIDLTI   71 (252)
Q Consensus         1 M~v~v~~-~--g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~-~~~t~i~l~~   71 (252)
                      |+|+|.- .  +..++++|+|++||++||++|++++|+|+++|||+|+|+.++|+.+|++|||. ++++ +||.+
T Consensus        25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t-~hL~l   98 (105)
T 4dbg_A           25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDS-AYLYL   98 (105)
T ss_dssp             EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCE-EEEEE
T ss_pred             EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCE-EEEEE
Confidence            6788854 3  58999999999999999999999999999999999999999999999999995 5666 88876

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.62  E-value=3.8e-16  Score=113.74  Aligned_cols=74  Identities=19%  Similarity=0.288  Sum_probs=66.0

Q ss_pred             ccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCC---------------CceEEeecCeeec-CCccccc
Q 045158          168 RRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPR---------------EDYIFIHKQRIMR-DNCSLRW  231 (252)
Q Consensus       168 ~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~---------------~~~~l~~~g~~l~-d~~tL~~  231 (252)
                      ..|+|+|+    +++|++++++|++++||++||++|++++++|+               ++|+|+|+|+.|. |+.||.+
T Consensus         6 ~~M~I~Vk----~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~d   81 (105)
T 1v2y_A            6 SGMTVRVC----KMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRD   81 (105)
T ss_dssp             CSEEEEEE----CSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHH
T ss_pred             CcEEEEEE----ecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHH
Confidence            34777775    58899999999999999999999999999987               4679999999996 5699999


Q ss_pred             cCCCCCCEEEEecC
Q 045158          232 HGVEYGDILYVFKG  245 (252)
Q Consensus       232 y~I~~gsti~l~~~  245 (252)
                      |||++||+|+++..
T Consensus        82 ygI~~g~~l~lv~~   95 (105)
T 1v2y_A           82 YGIRNRDEVSFIKK   95 (105)
T ss_dssp             HTCCSSEEEEEEEC
T ss_pred             cCCCCCCEEEEEeh
Confidence            99999999999853

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.62  E-value=1.2e-15  Score=110.73  Aligned_cols=72  Identities=17%  Similarity=0.178  Sum_probs=65.3

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF   74 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~   74 (252)
                      |+|+|+. +|+ +.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++..
T Consensus        23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gst-I~l~~r~~   95 (100)
T 1yqb_A           23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLT-VHLVIKRQ   95 (100)
T ss_dssp             EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCE-EEEEECCC
T ss_pred             EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCE-EEEEEcCC
Confidence            7888976 565 799999999999999999999999999999999999999999999999997776 88887644

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.62  E-value=7.6e-16  Score=110.97  Aligned_cols=74  Identities=11%  Similarity=0.266  Sum_probs=68.9

Q ss_pred             CCcEEEEEEeCCcEE-EEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeee
Q 045158           82 HDKIHIIIKFPSRKF-NIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKT  157 (252)
Q Consensus        82 ~~~~~i~v~~~g~~~-~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~  157 (252)
                      ..+|+|+|++.|+.+ .+++++++||.+||++|++.+|+|+++|+|+|+|+.|. |+ +|++|+|++|++|+|+.++
T Consensus         5 ~~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~-D~-tL~~~~I~~g~~i~l~~~~   79 (96)
T 1wgg_A            5 SSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLK-DD-DWGNIKMKNGMTVLMMGSA   79 (96)
T ss_dssp             CCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECC-SS-CCCSCCCCSSCEEECCCCC
T ss_pred             CcEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCC-CC-CHHHCCCCCCCEEEEEecc
Confidence            356999999989999 69999999999999999999999999999999999996 77 9999999999999998754

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.62  E-value=4.7e-16  Score=112.10  Aligned_cols=73  Identities=15%  Similarity=0.182  Sum_probs=66.9

Q ss_pred             CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158            1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF   74 (252)
Q Consensus         1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~   74 (252)
                      |+|+|+..|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++..
T Consensus        18 m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~-i~l~~~~~   90 (96)
T 1wx8_A           18 IRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGST-VHVVVRSH   90 (96)
T ss_dssp             EEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEE-EECCBCCS
T ss_pred             EEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCE-EEEEEeCC
Confidence            68888777999999999999999999999999999999999999999999999999999997766 88876543

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.62  E-value=3e-15  Score=108.58  Aligned_cols=72  Identities=15%  Similarity=0.167  Sum_probs=65.8

Q ss_pred             cEEEEEE-eC--CcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCC-CCCCEEEEEee
Q 045158           84 KIHIIIK-FP--SRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGI-REFSEIIVFLK  156 (252)
Q Consensus        84 ~~~i~v~-~~--g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i-~~~s~i~l~~~  156 (252)
                      .|+|+|+ ..  +..++++|.+++||++||++|++++|+|+++|+|+++|+.++ |+.+|.+||| ++|+++||.+-
T Consensus        24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~-D~~TL~~ygI~~~G~t~hL~l~   99 (105)
T 4dbg_A           24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLAR-DQETLHSHGVRQNGDSAYLYLL   99 (105)
T ss_dssp             EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC-TTCBTGGGTCCSTTCEEEEEEC
T ss_pred             EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEcc-CcCcHHHcCCCCCCCEEEEEEE
Confidence            4788888 44  368999999999999999999999999999999999999885 9999999999 69999999883

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.61  E-value=1.2e-15  Score=112.91  Aligned_cols=96  Identities=17%  Similarity=0.227  Sum_probs=77.1

Q ss_pred             CCCCCCEEEEEeeeccccCCCCccccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeee
Q 045158          144 GIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIM  223 (252)
Q Consensus       144 ~i~~~s~i~l~~~~~~~~~~~~~~~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l  223 (252)
                      ++.+|+++.+..++.. ...|..+..|+++|+    ...|+++.++|++++||++||++|+++.|+|++.|+|+|+|+.|
T Consensus        11 ~~~~~~~~~~~~~~~~-~~~g~~~~~m~I~Vk----~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L   85 (111)
T 2ojr_A           11 GWIEGDELYIDTNNDG-WIEGDELLAMQIFVK----TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL   85 (111)
T ss_dssp             SSCCGGGBCCCTTCSS-SCCGGGSSCEEEEEE----CSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEEC
T ss_pred             ceecCCEEEEeecccc-cccCCCCCeEEEEEE----cCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEEC
Confidence            3455666665543321 112223445788876    45789999999999999999999999999999999999999999


Q ss_pred             cCCccccccCCCCCCEEEEec
Q 045158          224 RDNCSLRWHGVEYGDILYVFK  244 (252)
Q Consensus       224 ~d~~tL~~y~I~~gsti~l~~  244 (252)
                      +|+.+|++|||++|++|+|+-
T Consensus        86 ~D~~tL~~~gI~~gs~I~l~~  106 (111)
T 2ojr_A           86 EDGRTLSDYNIQKESTLHLVL  106 (111)
T ss_dssp             CSSCBTTTTTCCTTCEEEEEE
T ss_pred             CCCCcHHHcCCCCCCEEEEEE
Confidence            999999999999999999973

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=99.61  E-value=1.2e-15  Score=114.55  Aligned_cols=74  Identities=9%  Similarity=0.082  Sum_probs=64.3

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHH------HhCCC--CCceEEEEcCeecCCCCCccccccccCCc-EEEEE
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQ------IFNIP--ATSQTLAVSGWELVDGLDMEDYPIVKEGT-KIDLT   70 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~------~~~i~--~~~q~L~~~g~~L~d~~~L~~~~i~~~~t-~i~l~   70 (252)
                      |+|+|+. +|+++++++++++||++||++|++      ++|+|  +++|+|+|+|+.|+|+.+|++|+|..++. ++||+
T Consensus        18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv   97 (125)
T 2gow_A           18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV   97 (125)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred             EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence            5677765 899999999999999999999999      77884  89999999999999999999999985552 37888


Q ss_pred             ecCC
Q 045158           71 INPF   74 (252)
Q Consensus        71 ~~~~   74 (252)
                      ++..
T Consensus        98 ~r~~  101 (125)
T 2gow_A           98 ARET  101 (125)
T ss_dssp             ECSC
T ss_pred             ecCC
Confidence            7654

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.61  E-value=7.3e-16  Score=110.89  Aligned_cols=73  Identities=18%  Similarity=0.222  Sum_probs=65.6

Q ss_pred             CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCCC
Q 045158            1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPFL   75 (252)
Q Consensus         1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~~   75 (252)
                      |+|+|+..++.+.+++++++||.+||++|++.+|+|+++|+|+|.|+.|+ +.+|++|+|.++++ |+|+.++..
T Consensus        18 ~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~tL~~~~i~~g~~-i~lv~~~~~   90 (95)
T 1v86_A           18 VDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DKTLREIKVTSGAK-IMVVGSTIS   90 (95)
T ss_dssp             EEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SSBHHHHCCCTTEE-EEECCSSCC
T ss_pred             EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cCcHHHCCCCCCCE-EEEEecccc
Confidence            57788889999999999999999999999999999999999999999995 45999999997766 999876553

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.61  E-value=2.7e-15  Score=113.25  Aligned_cols=73  Identities=18%  Similarity=0.150  Sum_probs=66.0

Q ss_pred             CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158            1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF   74 (252)
Q Consensus         1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~   74 (252)
                      |+|+|+..|+.+.++|++++||.+||.+|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+.+..
T Consensus        33 m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gst-I~lv~~~~  105 (125)
T 1j8c_A           33 IKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLT-VHLVIKRD  105 (125)
T ss_dssp             EEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEE-EEEEEC--
T ss_pred             EEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCE-EEEEeccC
Confidence            68888766899999999999999999999999999999999999999999999999999997766 88887644

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.61  E-value=2.3e-15  Score=107.66  Aligned_cols=74  Identities=16%  Similarity=0.218  Sum_probs=66.6

Q ss_pred             CEEEEEeCCeEEEEEecCC-----CcHHHHHHHHHHHhCCCCCceEEEEcCeecCC-CCCccccccccCCcEEEEEecCC
Q 045158            1 MRIIIVANGHEFVLEVGLQ-----EPVLEIKRKIEQIFNIPATSQTLAVSGWELVD-GLDMEDYPIVKEGTKIDLTINPF   74 (252)
Q Consensus         1 M~v~v~~~g~~~~l~v~~~-----~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d-~~~L~~~~i~~~~t~i~l~~~~~   74 (252)
                      |+|+|+..|+.+.++++++     +||.+||++|++.+|+|+++|+|+|+|+.|+| +.+|++|+|.++++ |+|+.+++
T Consensus         8 ~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~-i~l~~~~~   86 (92)
T 1wxv_A            8 LTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCR-VMLIGKKN   86 (92)
T ss_dssp             EEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEE-EEEESCCS
T ss_pred             EEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCE-EEEEecCC
Confidence            6788888899999999996     99999999999999999999999999999999 55899999996666 99987665


Q ss_pred             C
Q 045158           75 L   75 (252)
Q Consensus        75 ~   75 (252)
                      .
T Consensus        87 ~   87 (92)
T 1wxv_A           87 S   87 (92)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.60  E-value=2.8e-15  Score=105.62  Aligned_cols=65  Identities=9%  Similarity=0.012  Sum_probs=59.4

Q ss_pred             cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEee-------cCeeecCCccccccCCCCCCEEEEecC
Q 045158          181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIH-------KQRIMRDNCSLRWHGVEYGDILYVFKG  245 (252)
Q Consensus       181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~-------~g~~l~d~~tL~~y~I~~gsti~l~~~  245 (252)
                      .+.+.....+++++||++||++|++++|+|+++|+|+|       .|+.|+|+++|.+|||++|+||+|+..
T Consensus        12 ~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~   83 (86)
T 4b6w_A           12 SRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL   83 (86)
T ss_dssp             CSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             CCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence            45667788999999999999999999999999999997       478999999999999999999999854

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.60  E-value=2.4e-15  Score=112.55  Aligned_cols=73  Identities=18%  Similarity=0.214  Sum_probs=62.7

Q ss_pred             CEEEEEe-CCeEE-EEEecCCCcHHHHHHHH-----HHHhCCCC--CceEEEEcCeecCCCCCccccccccCC-----cE
Q 045158            1 MRIIIVA-NGHEF-VLEVGLQEPVLEIKRKI-----EQIFNIPA--TSQTLAVSGWELVDGLDMEDYPIVKEG-----TK   66 (252)
Q Consensus         1 M~v~v~~-~g~~~-~l~v~~~~tV~~lK~~I-----~~~~~i~~--~~q~L~~~g~~L~d~~~L~~~~i~~~~-----t~   66 (252)
                      |+|+|+. +|+.+ .+++++++||.+||++|     ++++|+|+  ++|||+|+|+.|+|+.+|++|+|..++     +.
T Consensus        17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t   96 (126)
T 1se9_A           17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT   96 (126)
T ss_dssp             EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred             EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence            6888966 89888 79999999999999999     56678987  899999999999999999999999663     34


Q ss_pred             EEEEecC
Q 045158           67 IDLTINP   73 (252)
Q Consensus        67 i~l~~~~   73 (252)
                      +||+++.
T Consensus        97 mhlVlrl  103 (126)
T 1se9_A           97 MHVIIQA  103 (126)
T ss_dssp             EEEEECC
T ss_pred             EEEEecc
Confidence            7777653

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.60  E-value=5.8e-17  Score=123.06  Aligned_cols=76  Identities=32%  Similarity=0.590  Sum_probs=0.4

Q ss_pred             EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCC
Q 045158           85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRD  163 (252)
Q Consensus        85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~  163 (252)
                      |+|+|+ .+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|.+|++|+|++    |++|
T Consensus         1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~~I~~gsti~l~~----rl~G   75 (128)
T 3u5e_m            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL----RLRG   75 (128)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECC-CCCchhhhccCCCCEEEEEE----EcCC
Confidence            689999 58999999999999999999999999999999999999999996 89999999999999999999    6767


Q ss_pred             CC
Q 045158          164 NP  165 (252)
Q Consensus       164 ~~  165 (252)
                      |.
T Consensus        76 G~   77 (128)
T 3u5e_m           76 GI   77 (128)
T ss_dssp             -C
T ss_pred             CC
Confidence            63

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.60  E-value=3.6e-15  Score=108.64  Aligned_cols=77  Identities=18%  Similarity=0.324  Sum_probs=66.3

Q ss_pred             ccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCC-ccccccCCCCCCEEEEec
Q 045158          168 RRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDN-CSLRWHGVEYGDILYVFK  244 (252)
Q Consensus       168 ~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~-~tL~~y~I~~gsti~l~~  244 (252)
                      ..|+|+|+.......|+++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+ .+|.+|||++|++|+|..
T Consensus         6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~   83 (102)
T 1v5o_A            6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQ   83 (102)
T ss_dssp             CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECB
T ss_pred             CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEE
Confidence            34777776432112348999999999999999999999999999999999999999988 699999999999999974

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=99.60  E-value=3.7e-15  Score=111.98  Aligned_cols=74  Identities=9%  Similarity=0.077  Sum_probs=66.1

Q ss_pred             CCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHH------HhCCC--CccEEEEECceecccccccccccCCCCCC--E
Q 045158           82 HDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHI------IDGTP--IKRMLLFFSGIELDDEFRNLSEYGIREFS--E  150 (252)
Q Consensus        82 ~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~------~~gip--~~~q~L~~~g~~L~~d~~~L~~y~i~~~s--~  150 (252)
                      ...|.|+|+ ++|++++++|++++||++||++|++      ++|+|  +++|+|+|+|+.|+ |+.+|++|+|+.++  +
T Consensus        15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~Le-D~~TL~~y~I~~~~~~t   93 (125)
T 2gow_A           15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLH-GNVTLGALKLPFGKTTV   93 (125)
T ss_dssp             TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEE-SSCBTGGGCCCTTSEEE
T ss_pred             CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCC-CCCcHHHcCCCCCCceE
Confidence            445899999 5899999999999999999999999      67884  89999999999996 99999999999776  7


Q ss_pred             EEEEee
Q 045158          151 IIVFLK  156 (252)
Q Consensus       151 i~l~~~  156 (252)
                      +||+++
T Consensus        94 lhlv~r   99 (125)
T 2gow_A           94 MHLVAR   99 (125)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            888884

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.60  E-value=1.7e-15  Score=109.44  Aligned_cols=73  Identities=14%  Similarity=0.108  Sum_probs=62.7

Q ss_pred             cccceeeEEeeeeccCCc--eEEEEecCCCcHHHHHHHHhhc-CCCCC-CceEEeecCeeecCCcccccc--CCCCCCEE
Q 045158          167 IRRLSFKVQTSSSLLNGA--SIPLEMQDSSTVNELRHLLLSS-KILPR-EDYIFIHKQRIMRDNCSLRWH--GVEYGDIL  240 (252)
Q Consensus       167 ~~~~~i~v~~~~~~~~g~--~~~l~v~~~~tV~~Lk~~i~~~-~gip~-~~~~l~~~g~~l~d~~tL~~y--~I~~gsti  240 (252)
                      +..|+++|+    +++|+  +++++|++++||++||++|+++ +|+|+ ++|+|+|+|+.|+|+++|++|  +|++|+||
T Consensus        21 ~~~m~I~VK----~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~ti   96 (99)
T 2kdb_A           21 GHPVTLIIK----APNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMV   96 (99)
T ss_dssp             --CEEEEEE----CTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEE
T ss_pred             CCeEEEEEE----cCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEE
Confidence            345777776    46677  6789999999999999999985 57664 999999999999999999999  99999999


Q ss_pred             EEe
Q 045158          241 YVF  243 (252)
Q Consensus       241 ~l~  243 (252)
                      +|+
T Consensus        97 hLv   99 (99)
T 2kdb_A           97 HLV   99 (99)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            985

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.59  E-value=3.9e-15  Score=109.23  Aligned_cols=72  Identities=17%  Similarity=0.178  Sum_probs=65.3

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF   74 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~   74 (252)
                      |+|+|+. +|+ +.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++..
T Consensus        18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~-i~l~~~~~   90 (106)
T 1wx7_A           18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLT-VHLVIKRQ   90 (106)
T ss_dssp             EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEE-EEEEECCC
T ss_pred             EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCE-EEEEEcCC
Confidence            7888876 555 799999999999999999999999999999999999999999999999996666 99987654

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.58  E-value=2.3e-15  Score=108.77  Aligned_cols=72  Identities=22%  Similarity=0.269  Sum_probs=62.8

Q ss_pred             CCcEEEEEEe-CCc--EEEEeeCCCccHHHHHHHHHHH-hCCC-CccEEEEECceeccccccccccc--CCCCCCEEEEE
Q 045158           82 HDKIHIIIKF-PSR--KFNIDVDRTDTVRSLKEKIHII-DGTP-IKRMLLFFSGIELDDEFRNLSEY--GIREFSEIIVF  154 (252)
Q Consensus        82 ~~~~~i~v~~-~g~--~~~l~v~~~~TV~~lK~~I~~~-~gip-~~~q~L~~~g~~L~~d~~~L~~y--~i~~~s~i~l~  154 (252)
                      ...|+|+|+. +++  .+++++++++||.+||++|+++ .|+| +++|+|+|+|+.|+ |+.+|++|  +|+++++|+|+
T Consensus        21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~-D~~tL~~y~~~I~~~~tihLv   99 (99)
T 2kdb_A           21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLP-DHLQLKDILRKQDEYHMVHLV   99 (99)
T ss_dssp             --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEEC-TTSBTHHHHTTTCSEEEEEEC
T ss_pred             CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECC-CCCCHHHHhcCCCCCCEEEeC
Confidence            4569999994 666  6799999999999999999996 4666 59999999999996 89999999  99999999974

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=2.7e-15  Score=108.45  Aligned_cols=72  Identities=15%  Similarity=0.269  Sum_probs=66.2

Q ss_pred             ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEee--cCeeecCCccccccCCCCCCEEEEecCeecCCCC
Q 045158          180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIH--KQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGGY  252 (252)
Q Consensus       180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~--~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~~  252 (252)
                      +++|++++++|++++||++||++|++++|||+++|+|+|  .|+ |+|+.+|.+|+|++|++|+|+-..+++.|+
T Consensus        15 k~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~~~~~~   88 (100)
T 2dzm_A           15 EYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDLPPPSS   88 (100)
T ss_dssp             ECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSSCCCCS
T ss_pred             EeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCCCCCcc
Confidence            588999999999999999999999999999999999986  555 899999999999999999999888877663

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.57  E-value=1e-14  Score=104.86  Aligned_cols=71  Identities=17%  Similarity=0.083  Sum_probs=64.9

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCC-CCccccccccCCcEEEEEecCCC
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDG-LDMEDYPIVKEGTKIDLTINPFL   75 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~-~~L~~~~i~~~~t~i~l~~~~~~   75 (252)
                      |+|+|+. +|+.+.++|++++||.+||.+|++..   +++|+|+|+|+.|+|+ .+|++|+|.++++ |||+++++.
T Consensus         8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~-i~l~~~~~~   80 (95)
T 1wia_A            8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCV-IHCHRSPPG   80 (95)
T ss_dssp             EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEE-EEEECCCCC
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCE-EEEEECCCC
Confidence            7899965 89999999999999999999999988   8899999999999999 9999999997766 999987654

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.57  E-value=1e-14  Score=107.15  Aligned_cols=75  Identities=23%  Similarity=0.259  Sum_probs=66.6

Q ss_pred             CCcEEEEEEe-CC---cEEEEeeC--------C-CccHHHHHHHHHHHh--CCCCcc-EEEEECceecccccccccccCC
Q 045158           82 HDKIHIIIKF-PS---RKFNIDVD--------R-TDTVRSLKEKIHIID--GTPIKR-MLLFFSGIELDDEFRNLSEYGI  145 (252)
Q Consensus        82 ~~~~~i~v~~-~g---~~~~l~v~--------~-~~TV~~lK~~I~~~~--gip~~~-q~L~~~g~~L~~d~~~L~~y~i  145 (252)
                      ...|+|+|+. .+   +.+.++++        + ++||.+||++|++.+  |+|+++ |+|+|+|+.|+ |+.+|++|+|
T Consensus        10 ~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~-D~~tL~~y~i   88 (107)
T 1x1m_A           10 LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLK-DDQTLDFYGI   88 (107)
T ss_dssp             CCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECC-TTCBHHHHTC
T ss_pred             CCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECC-CCCcHHHcCC
Confidence            3458999995 56   68999954        4 499999999999999  999999 99999999996 8899999999


Q ss_pred             CCCCEEEEEeee
Q 045158          146 REFSEIIVFLKT  157 (252)
Q Consensus       146 ~~~s~i~l~~~~  157 (252)
                      ++|++|||+.++
T Consensus        89 ~~g~~i~lv~~~  100 (107)
T 1x1m_A           89 QPGSTVHVLRKS  100 (107)
T ss_dssp             CTTCEEEEEESS
T ss_pred             CCCCEEEEEeCC
Confidence            999999999853

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.57  E-value=2.8e-15  Score=107.79  Aligned_cols=73  Identities=23%  Similarity=0.350  Sum_probs=68.1

Q ss_pred             CCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           82 HDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        82 ~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      ...|+|+|++.++.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.| +|. +|++|+|+++++|+|+.+
T Consensus        15 ~~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~-tL~~~~i~~g~~i~lv~~   87 (95)
T 1v86_A           15 KELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDK-TLREIKVTSGAKIMVVGS   87 (95)
T ss_dssp             CCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSS-BHHHHCCCTTEEEEECCS
T ss_pred             CceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcC-cHHHCCCCCCCEEEEEec
Confidence            4568999999899999999999999999999999999999999999999999 575 999999999999999874

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.56  E-value=2.2e-16  Score=119.83  Aligned_cols=71  Identities=34%  Similarity=0.540  Sum_probs=0.0

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN   72 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~   72 (252)
                      |+|+|+. +|++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++
T Consensus         1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gst-i~l~~r   72 (128)
T 3u5e_m            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR   72 (128)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCE-EEEEEE
Confidence            8999965 8999999999999999999999999999999999999999999999999999997777 877654

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.56  E-value=9.2e-15  Score=108.15  Aligned_cols=74  Identities=22%  Similarity=0.307  Sum_probs=65.6

Q ss_pred             cceeeEEeeeeccCCceEEEEecC-CCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEe
Q 045158          169 RLSFKVQTSSSLLNGASIPLEMQD-SSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVF  243 (252)
Q Consensus       169 ~~~i~v~~~~~~~~g~~~~l~v~~-~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~  243 (252)
                      .|+++|+... ..+|+++.++|++ ++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+
T Consensus        27 ~i~i~Vk~~~-~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~  101 (111)
T 1we6_A           27 PATIRVSKPN-ENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLS  101 (111)
T ss_dssp             CEEEEECCTT-CSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEE
T ss_pred             cEEEEEEecc-cCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEE
Confidence            3677775310 0168999999998 999999999999999999999999999999999999999999999999997

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.56  E-value=2.2e-14  Score=102.89  Aligned_cols=74  Identities=20%  Similarity=0.245  Sum_probs=64.1

Q ss_pred             cCCcEEEEEEe-CC--cEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEEC--ce---ecccccccccccCCCCCCEEE
Q 045158           81 QHDKIHIIIKF-PS--RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFS--GI---ELDDEFRNLSEYGIREFSEII  152 (252)
Q Consensus        81 ~~~~~~i~v~~-~g--~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~--g~---~L~~d~~~L~~y~i~~~s~i~  152 (252)
                      ..+.+.|+|+. .+  +.+++++++++||++||++|++++|+|+++|+|+|.  |+   .|.+|+++|++|+|++|++|+
T Consensus        12 ~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstih   91 (95)
T 2kjr_A           12 KSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLH   91 (95)
T ss_dssp             CCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEE
T ss_pred             CCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEE
Confidence            45667888884 23  479999999999999999999999999999999997  44   453599999999999999999


Q ss_pred             EE
Q 045158          153 VF  154 (252)
Q Consensus       153 l~  154 (252)
                      |+
T Consensus        92 lv   93 (95)
T 2kjr_A           92 VV   93 (95)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=1e-14  Score=106.82  Aligned_cols=66  Identities=15%  Similarity=0.230  Sum_probs=62.8

Q ss_pred             CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158            8 NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF   74 (252)
Q Consensus         8 ~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~   74 (252)
                      .+..++++++++.||.+||++++.++++|+++|+|+|+|+.|.|+.||++|||+++.| |||.++..
T Consensus        25 ~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~T-IhLvi~s~   90 (118)
T 2daf_A           25 VGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEI-VQVEIFST   90 (118)
T ss_dssp             TCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCE-EEEEEEES
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCE-EEEEEecC
Confidence            6888999999999999999999999999999999999999999999999999998888 99998754

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.55  E-value=1.1e-14  Score=106.96  Aligned_cols=73  Identities=16%  Similarity=0.260  Sum_probs=64.8

Q ss_pred             CEEEEEe-CC---eEEEEEec--------C-CCcHHHHHHHHHHHh--CCCCCc-eEEEEcCeecCCCCCccccccccCC
Q 045158            1 MRIIIVA-NG---HEFVLEVG--------L-QEPVLEIKRKIEQIF--NIPATS-QTLAVSGWELVDGLDMEDYPIVKEG   64 (252)
Q Consensus         1 M~v~v~~-~g---~~~~l~v~--------~-~~tV~~lK~~I~~~~--~i~~~~-q~L~~~g~~L~d~~~L~~~~i~~~~   64 (252)
                      |+|+|+. ++   +.+.+++.        + ++||.+||++|++.+  |+|+++ |+|+|+|+.|+|+.+|++|+|.+++
T Consensus        13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~   92 (107)
T 1x1m_A           13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS   92 (107)
T ss_dssp             CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred             eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence            7889977 66   68999954        4 499999999999999  999999 9999999999999999999999777


Q ss_pred             cEEEEEecCC
Q 045158           65 TKIDLTINPF   74 (252)
Q Consensus        65 t~i~l~~~~~   74 (252)
                      + |||+.++.
T Consensus        93 ~-i~lv~~~~  101 (107)
T 1x1m_A           93 T-VHVLRKSW  101 (107)
T ss_dssp             E-EEEEESSC
T ss_pred             E-EEEEeCCC
Confidence            7 99988654

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.55  E-value=2e-14  Score=103.31  Aligned_cols=72  Identities=24%  Similarity=0.209  Sum_probs=66.2

Q ss_pred             CCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceeccccc-ccccccCCCCCCEEEEEeee
Q 045158           82 HDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEF-RNLSEYGIREFSEIIVFLKT  157 (252)
Q Consensus        82 ~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~-~~L~~y~i~~~s~i~l~~~~  157 (252)
                      ...|+|+|+ ..|+.+.++|++++||.+||++|++..   +++|+|+|+|+.|+ |+ .+|++|+|++|++|||++++
T Consensus         5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~-D~~~tL~~y~i~~g~~i~l~~~~   78 (95)
T 1wia_A            5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQ-DPARTLSSLNITNNCVIHCHRSP   78 (95)
T ss_dssp             CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECC-CSSCBTTTTTCCTTEEEEEECCC
T ss_pred             CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEcc-CCcCCHHHcCCCCCCEEEEEECC
Confidence            456999999 579999999999999999999999987   89999999999996 77 99999999999999999853

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.55  E-value=2e-14  Score=107.04  Aligned_cols=63  Identities=14%  Similarity=0.257  Sum_probs=61.1

Q ss_pred             cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEe
Q 045158          181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVF  243 (252)
Q Consensus       181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~  243 (252)
                      ++|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+
T Consensus        43 L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv  105 (115)
T 1we7_A           43 LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLA  105 (115)
T ss_dssp             CSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEE
T ss_pred             cCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEE
Confidence            569999999999999999999999999999999999999999999999999999999999996

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.55  E-value=1.6e-14  Score=101.70  Aligned_cols=72  Identities=14%  Similarity=0.116  Sum_probs=62.0

Q ss_pred             EEEEEe---CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEE-------cCeecCCCCCccccccccCCcEEEEEe
Q 045158            2 RIIIVA---NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAV-------SGWELVDGLDMEDYPIVKEGTKIDLTI   71 (252)
Q Consensus         2 ~v~v~~---~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~-------~g~~L~d~~~L~~~~i~~~~t~i~l~~   71 (252)
                      +|.|+.   +.+.+.+.+++++||++||++|+.++|+|+++|+|+|       .|+.|+|+.+|++|||.++++ |||+-
T Consensus         4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~-ihlvd   82 (86)
T 4b6w_A            4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFV-IHVVD   82 (86)
T ss_dssp             EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCE-EEEEE
T ss_pred             EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCE-EEEEe
Confidence            455543   5566789999999999999999999999999999996       588999999999999997777 99985


Q ss_pred             cCC
Q 045158           72 NPF   74 (252)
Q Consensus        72 ~~~   74 (252)
                      ..|
T Consensus        83 ~~P   85 (86)
T 4b6w_A           83 LQP   85 (86)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            443

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.55  E-value=1.3e-14  Score=104.03  Aligned_cols=74  Identities=15%  Similarity=0.063  Sum_probs=62.4

Q ss_pred             cceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeec--Ce---ee-cCCccccccCCCCCCEEEE
Q 045158          169 RLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHK--QR---IM-RDNCSLRWHGVEYGDILYV  242 (252)
Q Consensus       169 ~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~--g~---~l-~d~~tL~~y~I~~gsti~l  242 (252)
                      -+.++|..  ....++.+++++++++||++||++|++++|+|+++|+|+|.  |+   .| +|+++|++|||++|+||+|
T Consensus        15 ~v~l~It~--s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl   92 (95)
T 2kjr_A           15 FIKVNVSN--SHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV   92 (95)
T ss_dssp             EEEEEEEE--SSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred             eEEEEEEE--CCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence            35555543  23345689999999999999999999999999999999997  44   44 8999999999999999999


Q ss_pred             ec
Q 045158          243 FK  244 (252)
Q Consensus       243 ~~  244 (252)
                      ++
T Consensus        93 vD   94 (95)
T 2kjr_A           93 VD   94 (95)
T ss_dssp             EE
T ss_pred             EC
Confidence            75

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=5.7e-15  Score=106.72  Aligned_cols=72  Identities=17%  Similarity=0.227  Sum_probs=63.8

Q ss_pred             cEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEE--CceecccccccccccCCCCCCEEEEEeee
Q 045158           84 KIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFF--SGIELDDEFRNLSEYGIREFSEIIVFLKT  157 (252)
Q Consensus        84 ~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~--~g~~L~~d~~~L~~y~i~~~s~i~l~~~~  157 (252)
                      .|.+++. ++|+++++++++++||++||++|++++|||+++|+|++  +|+ |+ |+.+|++|+|++|++|||++.+
T Consensus         8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~-D~~tLs~~~I~~gstL~lvl~~   82 (100)
T 2dzm_A            8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VE-DSTVLKSLHLPKNNSLYVLTPD   82 (100)
T ss_dssp             CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CC-TTSBHHHHCCCSEEEEEECCSS
T ss_pred             ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CC-CcCCHHHcCCCCCCEEEEEecC
Confidence            3555554 89999999999999999999999999999999999986  555 85 8899999999999999998853

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.54  E-value=4.6e-16  Score=121.02  Aligned_cols=70  Identities=34%  Similarity=0.546  Sum_probs=0.0

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEe
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTI   71 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~   71 (252)
                      |+|+|+. +|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|++
T Consensus         1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gst-L~Lvl   71 (152)
T 3u5c_f            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVL   71 (152)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCE-EEEEe
Confidence            8999965 8999999999999999999999999999999999999999999999999999997777 77664

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.53  E-value=1.4e-14  Score=104.24  Aligned_cols=66  Identities=12%  Similarity=-0.007  Sum_probs=59.2

Q ss_pred             ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecC---ee----ecCCccccccCCCCCCEEEEecC
Q 045158          180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQ---RI----MRDNCSLRWHGVEYGDILYVFKG  245 (252)
Q Consensus       180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g---~~----l~d~~tL~~y~I~~gsti~l~~~  245 (252)
                      ...++.+++++++++||++||++|++++|+|+++|+|+|.|   +.    ++|+++|.+|+|++|++|+|+..
T Consensus        23 ~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd~   95 (97)
T 2kj6_A           23 NLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDL   95 (97)
T ss_dssp             TSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEEC
T ss_pred             CCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEeC
Confidence            34456899999999999999999999999999999999987   33    58999999999999999999864

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.52  E-value=4.7e-14  Score=101.45  Aligned_cols=73  Identities=22%  Similarity=0.226  Sum_probs=62.3

Q ss_pred             CcEEEEEEeC---CcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECce---e---cccccccccccCCCCCCEEEE
Q 045158           83 DKIHIIIKFP---SRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGI---E---LDDEFRNLSEYGIREFSEIIV  153 (252)
Q Consensus        83 ~~~~i~v~~~---g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~---~---L~~d~~~L~~y~i~~~s~i~l  153 (252)
                      +.+.++|..+   +..+++++++++||++||++|++++|+|+++|+|+|.|+   .   |.+|+++|++|+|++|++|+|
T Consensus        13 ~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl   92 (97)
T 2kj6_A           13 DSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI   92 (97)
T ss_dssp             CCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred             ceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence            3466777742   347999999999999999999999999999999999883   3   435899999999999999998


Q ss_pred             Ee
Q 045158          154 FL  155 (252)
Q Consensus       154 ~~  155 (252)
                      +-
T Consensus        93 vd   94 (97)
T 2kj6_A           93 ID   94 (97)
T ss_dssp             EE
T ss_pred             Ee
Confidence            75

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=1.7e-14  Score=102.07  Aligned_cols=68  Identities=21%  Similarity=0.241  Sum_probs=59.1

Q ss_pred             CEEEEEe-CCeEE--EE-EecCCCcHHHHHHHHHHH-hCCCCCceEEEEc--CeecCCCCCccccccccCCcEEEE
Q 045158            1 MRIIIVA-NGHEF--VL-EVGLQEPVLEIKRKIEQI-FNIPATSQTLAVS--GWELVDGLDMEDYPIVKEGTKIDL   69 (252)
Q Consensus         1 M~v~v~~-~g~~~--~l-~v~~~~tV~~lK~~I~~~-~~i~~~~q~L~~~--g~~L~d~~~L~~~~i~~~~t~i~l   69 (252)
                      |+|+|+. +|+.+  ++ +|+|++||.+||++|++. .|+|+++|+|+|.  |+.|+|+.+|++|+|.++++ |++
T Consensus        11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~st-l~~   85 (88)
T 2dzj_A           11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTAT-LYF   85 (88)
T ss_dssp             EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEE-EEE
T ss_pred             EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCE-EEE
Confidence            7899965 66654  58 999999999999999995 8999999999976  99999999999999997666 553

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=5e-14  Score=99.69  Aligned_cols=69  Identities=13%  Similarity=0.114  Sum_probs=60.8

Q ss_pred             ceeeEEeeeeccCCceE--EE-EecCCCcHHHHHHHHhh-cCCCCCCceEEeec--CeeecCCccccccCCCCCCEEEE
Q 045158          170 LSFKVQTSSSLLNGASI--PL-EMQDSSTVNELRHLLLS-SKILPREDYIFIHK--QRIMRDNCSLRWHGVEYGDILYV  242 (252)
Q Consensus       170 ~~i~v~~~~~~~~g~~~--~l-~v~~~~tV~~Lk~~i~~-~~gip~~~~~l~~~--g~~l~d~~tL~~y~I~~gsti~l  242 (252)
                      |+|+|+    +..|+.+  .+ +|++++||++||++|++ +.|+|+++|+|+|.  |+.|+|+.||++|+|++|++|++
T Consensus        11 M~I~Vk----~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~   85 (88)
T 2dzj_A           11 YEVEIL----DAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF   85 (88)
T ss_dssp             EEEEEE----ESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred             EEEEEE----CCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence            666665    4667665  48 99999999999999999 68999999999976  89999999999999999999986

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=1.4e-13  Score=100.78  Aligned_cols=74  Identities=15%  Similarity=0.210  Sum_probs=67.1

Q ss_pred             CcEEEEEE-e-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeee
Q 045158           83 DKIHIIIK-F-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKT  157 (252)
Q Consensus        83 ~~~~i~v~-~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~  157 (252)
                      ..+.|.|+ . +++.+.++++++.||++||++++...++|+++|+|+|+|+.|. |+.||.+|||++|.+|||+.+.
T Consensus        14 ~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLK-D~eTL~~~gIk~g~TIhLvi~s   89 (118)
T 2daf_A           14 SLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILK-NNETLVQHGVKPQEIVQVEIFS   89 (118)
T ss_dssp             SCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEEC-SSCCHHHHSCCSSCEEEEEEEE
T ss_pred             ccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcC-CcchHHHcCCCCCCEEEEEEec
Confidence            34667776 3 4778999999999999999999999999999999999999995 9999999999999999999864

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=99.49  E-value=1.1e-15  Score=122.23  Aligned_cols=73  Identities=16%  Similarity=0.154  Sum_probs=1.5

Q ss_pred             EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCC
Q 045158           85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRD  163 (252)
Q Consensus        85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~  163 (252)
                      |+|+|+ ++|++++++|++++||.+||++|++.+|+|+++|+|+|+|++|+ |+.+|+     ++|+|||++    |++|
T Consensus         1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~Le-D~~TLs-----~~STLhLvl----RLrG   70 (189)
T 2xzm_9            1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAP-NTELVT-----DDVTYYLSL----KLLG   70 (189)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECC-CCCccc-----CCCEEEEEE----ecCC
Confidence            789999 68999999999999999999999999999999999999999996 889998     999999999    7888


Q ss_pred             CCcc
Q 045158          164 NPPI  167 (252)
Q Consensus       164 ~~~~  167 (252)
                      |...
T Consensus        71 G~~k   74 (189)
T 2xzm_9           71 GKKK   74 (189)
T ss_dssp             -CCC
T ss_pred             Cccc
Confidence            7653

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=99.47  E-value=1.5e-13  Score=118.05  Aligned_cols=75  Identities=28%  Similarity=0.550  Sum_probs=70.4

Q ss_pred             cCCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           81 QHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        81 ~~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      ..+.|+|+|+ ..|+.+.+++++++||++||++|+++.|+|+++|+|+|+|+.|+ |+.+|++|+|+++++|+|+++
T Consensus       230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~-D~~TLsdygI~~gstL~LvlR  305 (307)
T 3ai5_A          230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLR  305 (307)
T ss_dssp             SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBTGGGTCCTTCEEEEEC-
T ss_pred             CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecC-CCCCHHHcCCCCCCEEEEEEe
Confidence            4678999999 47999999999999999999999999999999999999999996 889999999999999999983

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.44  E-value=2.4e-13  Score=97.60  Aligned_cols=72  Identities=24%  Similarity=0.259  Sum_probs=61.9

Q ss_pred             cEEEEEEeCCc--EEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECc---ee---cccccccccccCCCCCCEEEEEe
Q 045158           84 KIHIIIKFPSR--KFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSG---IE---LDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        84 ~~~i~v~~~g~--~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g---~~---L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      .+.|+|+..+.  .+.+++++++||++||++|++++|+|+++|+|+|.|   +.   |.+|+.+|++|+|++|++|||..
T Consensus         7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d   86 (95)
T 1v6e_A            7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID   86 (95)
T ss_dssp             CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred             EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence            36677775444  689999999999999999999999999999999986   43   42488999999999999999875

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=99.44  E-value=2.5e-13  Score=116.67  Aligned_cols=71  Identities=34%  Similarity=0.543  Sum_probs=65.8

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN   72 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~   72 (252)
                      |+|+|+. +|+.+.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |+|+++
T Consensus       234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gst-L~LvlR  305 (307)
T 3ai5_A          234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR  305 (307)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCE-EEEEC-
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCE-EEEEEe
Confidence            7889976 8999999999999999999999999999999999999999999999999999997777 888753

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.43  E-value=3.1e-13  Score=97.04  Aligned_cols=69  Identities=17%  Similarity=0.162  Sum_probs=59.3

Q ss_pred             EEEEEeCCe--EEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcC---ee----cCCCCCccccccccCCcEEEEEe
Q 045158            2 RIIIVANGH--EFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSG---WE----LVDGLDMEDYPIVKEGTKIDLTI   71 (252)
Q Consensus         2 ~v~v~~~g~--~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g---~~----L~d~~~L~~~~i~~~~t~i~l~~   71 (252)
                      .|+|+..+.  .+.+++++++||++||++|+..+|+|+++|+|+|+|   +.    ++|+.+|++|||.++++ ||+.-
T Consensus         9 ~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~-l~v~d   86 (95)
T 1v6e_A            9 MVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCR-IHVID   86 (95)
T ss_dssp             EEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCE-EEEBC
T ss_pred             EEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCE-EEEEE
Confidence            455665544  689999999999999999999999999999999986   43    58999999999997777 88864

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=99.42  E-value=7.2e-13  Score=99.50  Aligned_cols=73  Identities=19%  Similarity=0.270  Sum_probs=63.0

Q ss_pred             CcEEEEEEeCCc--EEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECc---e---ecccccccccccCCCCCCEEEEE
Q 045158           83 DKIHIIIKFPSR--KFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSG---I---ELDDEFRNLSEYGIREFSEIIVF  154 (252)
Q Consensus        83 ~~~~i~v~~~g~--~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g---~---~L~~d~~~L~~y~i~~~s~i~l~  154 (252)
                      ..+.|+|+..+.  .+.+++++++||++||++|+.++|+|+++|+|+|.|   +   .|.+|+.+|++|+|++|++|||.
T Consensus         5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv   84 (122)
T 1t0y_A            5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV   84 (122)
T ss_dssp             CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred             CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence            356777775444  688999999999999999999999999999999977   3   34358899999999999999998


Q ss_pred             e
Q 045158          155 L  155 (252)
Q Consensus       155 ~  155 (252)
                      .
T Consensus        85 d   85 (122)
T 1t0y_A           85 D   85 (122)
T ss_dssp             E
T ss_pred             e
Confidence            6

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=99.42  E-value=3e-13  Score=119.26  Aligned_cols=73  Identities=23%  Similarity=0.325  Sum_probs=66.2

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHH---HhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecC
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQ---IFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINP   73 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~---~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~   73 (252)
                      |+|+|+. +|+++.|+|++++||.+||.+|+.   +.|+|+++|+|+|+|+.|+|+.+|++|+|.++++.++|+.++
T Consensus         8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~   84 (368)
T 1oqy_A            8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT   84 (368)
T ss_dssp             CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECC
T ss_pred             EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecC
Confidence            8899977 799999999999999999999999   577999999999999999999999999999888843666654

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=99.42  E-value=1.6e-14  Score=115.46  Aligned_cols=65  Identities=18%  Similarity=0.247  Sum_probs=0.0

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEe
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTI   71 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~   71 (252)
                      |+|+|+. +|++++++|++++||.+||.+|++.+|+|+++|+|+|+|++|+|+.+|+     ++++ |||++
T Consensus         1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~ST-LhLvl   66 (189)
T 2xzm_9            1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVT-YYLSL   66 (189)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCE-EEEEE
Confidence            8999964 8999999999999999999999999999999999999999999999999     4777 77764

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.41  E-value=1.1e-12  Score=93.73  Aligned_cols=79  Identities=14%  Similarity=0.249  Sum_probs=72.2

Q ss_pred             CCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccc
Q 045158           82 HDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNR  160 (252)
Q Consensus        82 ~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~  160 (252)
                      +..|+|.|+ .+|+.+.++|.+++++..|+++++++.|+|+++|+|+|+|+.|. +..|.++|++.+|++|++++    +
T Consensus         5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~-~~~Tp~dl~medgD~Idv~~----~   79 (94)
T 2io1_B            5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQ----Q   79 (94)
T ss_dssp             -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCTTTTTCCTTCEEEEEE----C
T ss_pred             CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEE----e
Confidence            345889999 58899999999999999999999999999999999999999996 88999999999999999999    6


Q ss_pred             cCCCC
Q 045158          161 LRDNP  165 (252)
Q Consensus       161 ~~~~~  165 (252)
                      ++||.
T Consensus        80 ~~GG~   84 (94)
T 2io1_B           80 QTGGV   84 (94)
T ss_dssp             CEESC
T ss_pred             ccCCC
Confidence            77774

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.40  E-value=1e-12  Score=93.94  Aligned_cols=78  Identities=13%  Similarity=0.187  Sum_probs=69.6

Q ss_pred             ccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCee
Q 045158          168 RRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTV  247 (252)
Q Consensus       168 ~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~  247 (252)
                      ..|++.|+    ...|+.+.+.|.++++++.|++.++++.|+|+++++|+|+|+.|++++|+++|++++||+|+++..-.
T Consensus         6 ~~i~ikVk----~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~   81 (94)
T 2io1_B            6 DHINLKVA----GQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT   81 (94)
T ss_dssp             CEEEEEEE----CTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCE
T ss_pred             CeEEEEEE----CCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence            44677765    35789999999999999999999999999999999999999999999999999999999999986544


Q ss_pred             cC
Q 045158          248 SR  249 (252)
Q Consensus       248 ~~  249 (252)
                      .|
T Consensus        82 GG   83 (94)
T 2io1_B           82 GG   83 (94)
T ss_dssp             ES
T ss_pred             CC
Confidence            33

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.39  E-value=5.4e-13  Score=97.90  Aligned_cols=73  Identities=14%  Similarity=0.232  Sum_probs=63.0

Q ss_pred             ccceeeEEeeeeccCCceEEEEec-CCCcHHHHHHHHhhcCCCCCCceEEeecCe-----------e----ecCCccccc
Q 045158          168 RRLSFKVQTSSSLLNGASIPLEMQ-DSSTVNELRHLLLSSKILPREDYIFIHKQR-----------I----MRDNCSLRW  231 (252)
Q Consensus       168 ~~~~i~v~~~~~~~~g~~~~l~v~-~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~-----------~----l~d~~tL~~  231 (252)
                      .+|.|+|+    ..+|+. .++|+ +++||++||++|++++|+|+++|+|++.++           .    ++|+.+|.+
T Consensus         6 ~~M~irvr----s~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~   80 (107)
T 1wf9_A            6 SGTMLRVR----SRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISS   80 (107)
T ss_dssp             CCEEEEEE----CSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGG
T ss_pred             CeEEEEEE----CCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHH
Confidence            34777776    356755 78999 999999999999999999999999998887           4    588999999


Q ss_pred             cCCCCCCEEEEecC
Q 045158          232 HGVEYGDILYVFKG  245 (252)
Q Consensus       232 y~I~~gsti~l~~~  245 (252)
                      |||++||+|+|...
T Consensus        81 ~gi~~G~~L~l~~~   94 (107)
T 1wf9_A           81 LNLAHGSMVYLAYE   94 (107)
T ss_dssp             TCCCTTCEEECCCS
T ss_pred             CCCCCCCEEEEEeC
Confidence            99999999999743

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=99.39  E-value=4.8e-13  Score=116.23  Aligned_cols=74  Identities=14%  Similarity=0.175  Sum_probs=66.6

Q ss_pred             CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEE---EcCeecCCCCCccccccccCCcEEEEEecCCC
Q 045158            1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLA---VSGWELVDGLDMEDYPIVKEGTKIDLTINPFL   75 (252)
Q Consensus         1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~---~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~~   75 (252)
                      |.|+|+.+|+.+++++++++||++||++|++++|||+++|+|+   |+|+.|+|+.+|++|+|+++++ |+|+.++.+
T Consensus         6 i~i~Vk~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~-l~L~gs~~~   82 (320)
T 3shq_A            6 VVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFK-LMMVGSTEA   82 (320)
T ss_dssp             EEEEEEETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CE-EEEECCCC-
T ss_pred             EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCE-EEEEccchh
Confidence            4677888999999999999999999999999999999999999   8999999999999999997777 999987664

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=99.38  E-value=5.8e-13  Score=117.47  Aligned_cols=73  Identities=27%  Similarity=0.444  Sum_probs=66.4

Q ss_pred             CcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHH---HhCCCCccEEEEECceecccccccccccCCCCCCEE-EEEee
Q 045158           83 DKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHI---IDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEI-IVFLK  156 (252)
Q Consensus        83 ~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~---~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i-~l~~~  156 (252)
                      ..|+|+||. .|+.+.++|++++||.+||.+|++   +.|+|+++|+|+|+|+.|+ |+.+|++|+|++|++| +|+.+
T Consensus         6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~-D~~tL~dygI~~gstIv~lv~k   83 (368)
T 1oqy_A            6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILS-DDVPIRDYRIDEKNFVVVMVTK   83 (368)
T ss_dssp             CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEEC-SSSBTTTTCCCTTSCEEEEEEC
T ss_pred             ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecC-CcCCHHHcCCCCCCEEEEEEec
Confidence            468999995 799999999999999999999999   5679999999999999996 8899999999999999 55553

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=99.38  E-value=1.5e-12  Score=97.69  Aligned_cols=71  Identities=13%  Similarity=0.101  Sum_probs=59.8

Q ss_pred             EEEEEeCCe--EEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcC---e---e-cCCCCCccccccccCCcEEEEEec
Q 045158            2 RIIIVANGH--EFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSG---W---E-LVDGLDMEDYPIVKEGTKIDLTIN   72 (252)
Q Consensus         2 ~v~v~~~g~--~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g---~---~-L~d~~~L~~~~i~~~~t~i~l~~~   72 (252)
                      .|+|+..+.  .+.+++++++||++||.+|+..+|+|+++|+|+|.|   +   . ++|+.+|++|||.++++ |||.-.
T Consensus         8 ~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~-ihvvd~   86 (122)
T 1t0y_A            8 DLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYR-IHAVDV   86 (122)
T ss_dssp             EEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEE-EEEEEC
T ss_pred             EEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCE-EEEEeC
Confidence            455655444  688999999999999999999999999999999987   3   2 47889999999997776 998864


Q ss_pred             C
Q 045158           73 P   73 (252)
Q Consensus        73 ~   73 (252)
                      .
T Consensus        87 ~   87 (122)
T 1t0y_A           87 T   87 (122)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.37  E-value=8.5e-13  Score=96.81  Aligned_cols=73  Identities=18%  Similarity=0.109  Sum_probs=64.3

Q ss_pred             cEEEEEEe-CCcEEEEeeC-CCccHHHHHHHHHHHhCCCCccEEEEECce-----------ec---ccccccccccCCCC
Q 045158           84 KIHIIIKF-PSRKFNIDVD-RTDTVRSLKEKIHIIDGTPIKRMLLFFSGI-----------EL---DDEFRNLSEYGIRE  147 (252)
Q Consensus        84 ~~~i~v~~-~g~~~~l~v~-~~~TV~~lK~~I~~~~gip~~~q~L~~~g~-----------~L---~~d~~~L~~y~i~~  147 (252)
                      .|.|+|+. .|+. .++|+ +++||.+||++|++++|+|+++|+|.+.|+           .|   .+|+.+|++|+|++
T Consensus         7 ~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~   85 (107)
T 1wf9_A            7 GTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH   85 (107)
T ss_dssp             CEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred             eEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence            48999994 6654 78999 999999999999999999999999999888           43   25889999999999


Q ss_pred             CCEEEEEeee
Q 045158          148 FSEIIVFLKT  157 (252)
Q Consensus       148 ~s~i~l~~~~  157 (252)
                      |++|||....
T Consensus        86 G~~L~l~~~~   95 (107)
T 1wf9_A           86 GSMVYLAYEG   95 (107)
T ss_dssp             TCEEECCCSS
T ss_pred             CCEEEEEeCC
Confidence            9999998754

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=99.34  E-value=1.3e-12  Score=113.48  Aligned_cols=74  Identities=18%  Similarity=0.345  Sum_probs=67.6

Q ss_pred             CcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEE---ECceecccccccccccCCCCCCEEEEEeee
Q 045158           83 DKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF---FSGIELDDEFRNLSEYGIREFSEIIVFLKT  157 (252)
Q Consensus        83 ~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~---~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~  157 (252)
                      ..+.|.|+++|+.+.+++++++||++||++|++.+|+|+++|+|+   |+|+.|. |+.+|++|+|++|++|+|+-++
T Consensus         4 ~~i~i~Vk~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~-D~~~L~~~~ik~g~~l~L~gs~   80 (320)
T 3shq_A            4 KEVVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAA-DNVKISALELKPNFKLMMVGST   80 (320)
T ss_dssp             CEEEEEEEETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCC-TTSBTTSSCCC--CEEEEECCC
T ss_pred             ceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccC-ccccHHHcCCCCCCEEEEEccc
Confidence            458899999999999999999999999999999999999999999   8999996 8899999999999999998754

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=99.32  E-value=9.3e-12  Score=88.35  Aligned_cols=76  Identities=13%  Similarity=0.198  Sum_probs=68.4

Q ss_pred             cceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeec
Q 045158          169 RLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVS  248 (252)
Q Consensus       169 ~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~  248 (252)
                      .|.+.|+    ...|+.+.+.|.++++++.|++..+++.|+|+++++|+|+|+.|+++.|.++|++++||+|.++.....
T Consensus         5 ~i~ikVk----~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~g   80 (91)
T 2io0_B            5 HINLKVA----GQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG   80 (91)
T ss_dssp             EEEEEEE----CTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCC
T ss_pred             eEEEEEE----CCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence            4666665    357899999999999999999999999999999999999999999999999999999999999865443

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=99.29  E-value=2.1e-11  Score=86.49  Aligned_cols=78  Identities=14%  Similarity=0.247  Sum_probs=71.5

Q ss_pred             CcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeecccc
Q 045158           83 DKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRL  161 (252)
Q Consensus        83 ~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~  161 (252)
                      ..|.|.|+ .+|+.+.+.|.+++++..|+.+.+++.|+|++.++|+|+|+.|. +..|.++|++.+|++|++++    ++
T Consensus         4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~-~~~Tp~dl~medgD~Idv~~----~q   78 (91)
T 2io0_B            4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQ----QQ   78 (91)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECC-TTCCTTTTTCCTTEEEEEEE----CC
T ss_pred             CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEE----ec
Confidence            45788888 57899999999999999999999999999999999999999996 88999999999999999998    56


Q ss_pred             CCCC
Q 045158          162 RDNP  165 (252)
Q Consensus       162 ~~~~  165 (252)
                      +||+
T Consensus        79 ~gg~   82 (91)
T 2io0_B           79 TGGV   82 (91)
T ss_dssp             CCCC
T ss_pred             cCCc
Confidence            6663

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=99.29  E-value=5.1e-12  Score=88.92  Aligned_cols=69  Identities=22%  Similarity=0.266  Sum_probs=59.1

Q ss_pred             CEEEEEe-CCeEEEEE-ecCCCcHHHHHHHHHHHhCCCCCceEEEEc--CeecC---CCCCccccccccCCcEEEEEe
Q 045158            1 MRIIIVA-NGHEFVLE-VGLQEPVLEIKRKIEQIFNIPATSQTLAVS--GWELV---DGLDMEDYPIVKEGTKIDLTI   71 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~-v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~--g~~L~---d~~~L~~~~i~~~~t~i~l~~   71 (252)
                      |+|.|+. +|+ ..++ +++++||.+||++|++++|+|+++|+|+|+  ++.|+   |+.+|++|||.++++ |++.-
T Consensus         1 m~i~vr~~~G~-~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~-l~v~~   76 (86)
T 2kzr_A            1 WRVRCKAKGGT-HLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDM-LIVEE   76 (86)
T ss_dssp             CCEEEEETTEE-EEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCE-EECCC
T ss_pred             CEEEEEcCCCC-EEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCE-EEEEe
Confidence            8999987 564 5588 999999999999999999999999999987  47774   678999999997766 77653

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=99.26  E-value=2.4e-11  Score=84.02  Aligned_cols=73  Identities=16%  Similarity=0.171  Sum_probs=66.2

Q ss_pred             cccceeeEEeeeeccCCc-eEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEe
Q 045158          167 IRRLSFKVQTSSSLLNGA-SIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVF  243 (252)
Q Consensus       167 ~~~~~i~v~~~~~~~~g~-~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~  243 (252)
                      ...|.+.|+    ...|+ .+.+.|.++++++.|++..+++.|+|+++++|+|+|+.|.++.|.++|++++||+|.++
T Consensus         5 ~~~i~ikV~----~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   78 (79)
T 3a4r_A            5 SQELRLRVQ----GKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW   78 (79)
T ss_dssp             CCCEEEEEE----CSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred             CCEEEEEEE----eCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            345777775    35685 89999999999999999999999999999999999999999999999999999999985

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=99.26  E-value=8.9e-12  Score=87.68  Aligned_cols=71  Identities=18%  Similarity=0.144  Sum_probs=60.6

Q ss_pred             EEEEEEe-CCcEEEEe-eCCCccHHHHHHHHHHHhCCCCccEEEEECc--eecc--cccccccccCCCCCCEEEEEee
Q 045158           85 IHIIIKF-PSRKFNID-VDRTDTVRSLKEKIHIIDGTPIKRMLLFFSG--IELD--DEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        85 ~~i~v~~-~g~~~~l~-v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g--~~L~--~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      |+|.|++ +|+ ..+. +++++||.+||++|++++|+|+++|+|.|++  +.|.  +|+.+|++|||.+|++|+|...
T Consensus         1 m~i~vr~~~G~-~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~   77 (86)
T 2kzr_A            1 WRVRCKAKGGT-HLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED   77 (86)
T ss_dssp             CCEEEEETTEE-EEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred             CEEEEEcCCCC-EEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence            6789996 554 4577 9999999999999999999999999999874  7773  3678999999999999998753

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=99.23  E-value=6.8e-11  Score=84.32  Aligned_cols=78  Identities=14%  Similarity=0.260  Sum_probs=68.9

Q ss_pred             CCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccc
Q 045158           82 HDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNR  160 (252)
Q Consensus        82 ~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~  160 (252)
                      ...|.|.|+ .+|+.+.+.|.+++++..|+.+.+++.|+|++.++|+|.|+.|. +..|..+|++.+|++|++++    +
T Consensus        15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~-~~~Tp~dl~medgD~Idv~~----~   89 (93)
T 2d07_B           15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQ----Q   89 (93)
T ss_dssp             CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCTTTTTCCTTEEEEEEE----C
T ss_pred             CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcC-CCCCHHHcCCCCCCEEEEEe----e
Confidence            345788888 57888999999999999999999999999999999999999996 88999999999999999998    4


Q ss_pred             cCCC
Q 045158          161 LRDN  164 (252)
Q Consensus       161 ~~~~  164 (252)
                      ++||
T Consensus        90 q~GG   93 (93)
T 2d07_B           90 QTGG   93 (93)
T ss_dssp             C---
T ss_pred             ccCC
Confidence            5553

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.22  E-value=4.6e-11  Score=85.96  Aligned_cols=73  Identities=19%  Similarity=0.329  Sum_probs=62.4

Q ss_pred             cEEEEEEe----CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECc-------eecccccccccccCCCCCCEEE
Q 045158           84 KIHIIIKF----PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSG-------IELDDEFRNLSEYGIREFSEII  152 (252)
Q Consensus        84 ~~~i~v~~----~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g-------~~L~~d~~~L~~y~i~~~s~i~  152 (252)
                      .+.|+|+.    +++.+...+.++.||.+||.+|+..+|+|+..|+|.|.+       ..|.+|..+|++|++.+|++||
T Consensus         9 ~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~   88 (97)
T 1wjn_A            9 LLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLL   88 (97)
T ss_dssp             EEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEE
T ss_pred             cEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEE
Confidence            45666652    467889999999999999999999999999999999863       3476789999999999999999


Q ss_pred             EEee
Q 045158          153 VFLK  156 (252)
Q Consensus       153 l~~~  156 (252)
                      +...
T Consensus        89 V~d~   92 (97)
T 1wjn_A           89 VRWS   92 (97)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            9863

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=99.21  E-value=4e-11  Score=81.42  Aligned_cols=64  Identities=13%  Similarity=0.164  Sum_probs=61.1

Q ss_pred             ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEe
Q 045158          180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVF  243 (252)
Q Consensus       180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~  243 (252)
                      ...|+.+.+.|.++++++.|++..+++.|+|+++++|+|+|+.|+++.|.++|++++||+|.++
T Consensus         8 ~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   71 (72)
T 1wm3_A            8 GQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             CTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             CCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            3578999999999999999999999999999999999999999999999999999999999986

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=99.19  E-value=1e-10  Score=79.42  Aligned_cols=69  Identities=14%  Similarity=0.269  Sum_probs=64.9

Q ss_pred             EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEE
Q 045158           85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVF  154 (252)
Q Consensus        85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~  154 (252)
                      |.|.|+ .+|+.+.+.+.+++++..|+.+.+++.|+|++.++++|+|+.|. +..|.++|++.+|++|++.
T Consensus         2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~-~~~Tp~~l~medgD~Idv~   71 (72)
T 1wm3_A            2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECC-TTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcC-CCCCHHHcCCCCCCEEEEE
Confidence            678888 57899999999999999999999999999999999999999996 8899999999999999986

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.18  E-value=7.6e-11  Score=85.63  Aligned_cols=79  Identities=15%  Similarity=0.290  Sum_probs=72.3

Q ss_pred             CCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccc
Q 045158           82 HDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNR  160 (252)
Q Consensus        82 ~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~  160 (252)
                      ...|.|.|+ .+|+.+.+.|.+++++..|+.+.+++.|+|++.++|+|.|+.|. +..|..+|++.+|++|++++    +
T Consensus        22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~-~~~Tp~dl~medgD~Idv~~----~   96 (104)
T 1wz0_A           22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQ----Q   96 (104)
T ss_dssp             SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCC-TTSCTTTTTCCTTEEEEECC----C
T ss_pred             CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEE----e
Confidence            456889998 57889999999999999999999999999999999999999996 88999999999999999998    6


Q ss_pred             cCCCC
Q 045158          161 LRDNP  165 (252)
Q Consensus       161 ~~~~~  165 (252)
                      ++||+
T Consensus        97 q~GG~  101 (104)
T 1wz0_A           97 QTSGP  101 (104)
T ss_dssp             CCCCS
T ss_pred             ccCCC
Confidence            66764

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=99.15  E-value=3.3e-10  Score=82.34  Aligned_cols=74  Identities=14%  Similarity=0.252  Sum_probs=68.0

Q ss_pred             cCCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           81 QHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        81 ~~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      ....|.|.|+.+|+.+.+.|..++++..|+.+.+++.|++++.++|+|+|+.|. +..|.++|++.+|++|++++
T Consensus        28 ~~~~I~IkV~~~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~-~~~Tp~dl~medgD~Idv~~  101 (106)
T 2eke_C           28 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHR  101 (106)
T ss_dssp             CCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCTTTTTCCTTEEEEEEE
T ss_pred             CCCeEEEEEecCCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcC-CCCCHHHcCCCCCCEEEEEe
Confidence            345677777776788999999999999999999999999999999999999996 88999999999999999998

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=99.15  E-value=1.6e-10  Score=82.41  Aligned_cols=74  Identities=14%  Similarity=0.200  Sum_probs=66.5

Q ss_pred             ccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecC
Q 045158          168 RRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKG  245 (252)
Q Consensus       168 ~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~  245 (252)
                      ..|.+.|+    ...|+.+.+.|.+++++..|++..+++.|+|+++++|+|+|+.|.++.|.++|++++||+|.++..
T Consensus        16 ~~i~ikV~----~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~   89 (93)
T 2d07_B           16 DHINLKVA----GQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ   89 (93)
T ss_dssp             CEEEEEEE----CTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred             CeEEEEEE----CCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEee
Confidence            34566665    357888999999999999999999999999999999999999999999999999999999998743

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=99.14  E-value=3.5e-10  Score=78.12  Aligned_cols=72  Identities=14%  Similarity=0.253  Sum_probs=66.4

Q ss_pred             CCcEEEEEE-eCCc-EEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEE
Q 045158           82 HDKIHIIIK-FPSR-KFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVF  154 (252)
Q Consensus        82 ~~~~~i~v~-~~g~-~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~  154 (252)
                      +..|.|.|+ .+|+ .+.+.|.+++++..|+.+.+++.|+|+++++|+|.|+.|. +..|.++|++.+|++|++.
T Consensus         5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~-~~~Tp~~l~medgD~Idv~   78 (79)
T 3a4r_A            5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLS-GKELPADLGLESGDLIEVW   78 (79)
T ss_dssp             CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECC-SCCCHHHHTCCTTCEEEEE
T ss_pred             CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEe
Confidence            446889999 5785 8999999999999999999999999999999999999996 8899999999999999975

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.12  E-value=1.3e-10  Score=84.34  Aligned_cols=78  Identities=14%  Similarity=0.217  Sum_probs=68.7

Q ss_pred             ccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCee
Q 045158          168 RRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTV  247 (252)
Q Consensus       168 ~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~  247 (252)
                      ..|.+.|+    ...|+.+.+.|.+++++..|++..+++.|+|+++++|+|+|+.|.++.|.++|++++||+|+++.- .
T Consensus        23 ~~I~IkVk----~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~-q   97 (104)
T 1wz0_A           23 DHINLKVA----GQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ-Q   97 (104)
T ss_dssp             CCEEEEEE----CSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCC-C
T ss_pred             CeEEEEEE----CCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe-c
Confidence            44666665    357889999999999999999999999999999999999999999999999999999999999743 3


Q ss_pred             cCC
Q 045158          248 SRG  250 (252)
Q Consensus       248 ~~~  250 (252)
                      +||
T Consensus        98 ~GG  100 (104)
T 1wz0_A           98 TSG  100 (104)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            444

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=99.10  E-value=1.9e-10  Score=84.29  Aligned_cols=79  Identities=11%  Similarity=0.223  Sum_probs=72.1

Q ss_pred             cCCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeecc
Q 045158           81 QHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMN  159 (252)
Q Consensus        81 ~~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~  159 (252)
                      ....|.|.|+ .+|+.+.+.|.+++++..|+.+.+++.|+|+++++|+|.|+.|. +..|..+|++.+|++|++++    
T Consensus        23 ~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~-~~~Tp~dl~mEDgD~Idv~~----   97 (110)
T 2k8h_A           23 ETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPID-ETKTPEELGMEDDDVIDAMV----   97 (110)
T ss_dssp             CCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCC-SSSHHHHHHCSSEEEEEEEC----
T ss_pred             CCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEE----
Confidence            3456899999 57889999999999999999999999999999999999999996 88999999999999999998    


Q ss_pred             ccCCC
Q 045158          160 RLRDN  164 (252)
Q Consensus       160 ~~~~~  164 (252)
                      .++||
T Consensus        98 ~q~Gg  102 (110)
T 2k8h_A           98 EQTGG  102 (110)
T ss_dssp             CCCCC
T ss_pred             cccCc
Confidence            56665

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.09  E-value=9.3e-10  Score=79.01  Aligned_cols=66  Identities=23%  Similarity=0.250  Sum_probs=57.8

Q ss_pred             cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecC-------eee-cCCccccccCCCCCCEEEEecCe
Q 045158          181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQ-------RIM-RDNCSLRWHGVEYGDILYVFKGT  246 (252)
Q Consensus       181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g-------~~l-~d~~tL~~y~I~~gsti~l~~~~  246 (252)
                      .+|+.+...+..+.||++||.+|+..+|+|+..|+|.|.+       ..| +|+.+|.+|+|++|++|++....
T Consensus        20 ~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d~~   93 (97)
T 1wjn_A           20 PERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRWSG   93 (97)
T ss_dssp             SSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEECCS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEEecC
Confidence            5688899999999999999999999999999999999862       224 57789999999999999997643

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=99.08  E-value=1.5e-10  Score=84.78  Aligned_cols=75  Identities=13%  Similarity=0.200  Sum_probs=67.7

Q ss_pred             ccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCe
Q 045158          168 RRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGT  246 (252)
Q Consensus       168 ~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~  246 (252)
                      ..|.+.|+    ...|+.+.+.|.+++++..|++..+++.|+|+++++|+|+|+.|.++.|.++|++++||+|.++...
T Consensus        25 ~~I~IkVk----~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q   99 (110)
T 2k8h_A           25 ALVAVKVV----NADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQ   99 (110)
T ss_dssp             CCEEEEEE----ETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCC
T ss_pred             CeEEEEEE----CCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcc
Confidence            34666665    3578899999999999999999999999999999999999999999999999999999999998553

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=99.08  E-value=3.7e-10  Score=82.13  Aligned_cols=73  Identities=11%  Similarity=0.149  Sum_probs=66.2

Q ss_pred             ccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecC
Q 045158          168 RRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKG  245 (252)
Q Consensus       168 ~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~  245 (252)
                      ..|.+.|+    . .|+.+.+.|.+++++..|++..+++.|+|+++++|+|+|+.|+++.|.++|++++||+|.++..
T Consensus        30 ~~I~IkV~----~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~  102 (106)
T 2eke_C           30 THINLKVS----D-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE  102 (106)
T ss_dssp             SEEEEEEE----C-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred             CeEEEEEe----c-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEee
Confidence            34666654    4 6899999999999999999999999999999999999999999999999999999999998744

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=98.72  E-value=4.8e-08  Score=71.65  Aligned_cols=72  Identities=17%  Similarity=0.305  Sum_probs=64.7

Q ss_pred             cceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEec
Q 045158          169 RLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFK  244 (252)
Q Consensus       169 ~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~  244 (252)
                      .+.+.|+    ...|..+.+.|.++++...|++..+++.|+|++.++|.|+|..++++.|.+++++++||+|.++.
T Consensus        40 ~I~LKV~----~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~  111 (115)
T 3kyd_D           40 YIKLKVI----GQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ  111 (115)
T ss_dssp             EEEEEEE----CTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEE
T ss_pred             eEEEEEE----cCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence            3555554    24688889999999999999999999999999999999999999999999999999999999874

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=98.71  E-value=1.1e-07  Score=76.55  Aligned_cols=79  Identities=13%  Similarity=0.223  Sum_probs=71.7

Q ss_pred             cCCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccc
Q 045158           81 QHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNR  160 (252)
Q Consensus        81 ~~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~  160 (252)
                      ....++|.|+.+|+.+.+.+.+++++..|+...+++.|+|+.+++++|.|+.|. +..|..++++.+|++|++++    +
T Consensus        26 ~~~~I~LkV~~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~-~~~TP~dL~MEdgD~Idv~~----~  100 (200)
T 3pge_A           26 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHR----E  100 (200)
T ss_dssp             CCCCEEEEEECSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECC-TTCCTTTTTCCTTEEEEEEE----C
T ss_pred             CCCeEEEEEecCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEe----c
Confidence            345578888778889999999999999999999999999999999999999996 88999999999999999998    5


Q ss_pred             cCCC
Q 045158          161 LRDN  164 (252)
Q Consensus       161 ~~~~  164 (252)
                      +.||
T Consensus       101 q~gg  104 (200)
T 3pge_A          101 QIGG  104 (200)
T ss_dssp             CSCC
T ss_pred             cCcC
Confidence            6555

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=98.70  E-value=4.4e-08  Score=78.87  Aligned_cols=77  Identities=12%  Similarity=0.181  Sum_probs=68.2

Q ss_pred             cceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeec
Q 045158          169 RLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVS  248 (252)
Q Consensus       169 ~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~  248 (252)
                      .+++.|+     ..|+.+.+.|.+++++..|++..+++.|+|+++++|.|+|+.+.++.|.+++++++||+|.++.--+.
T Consensus        29 ~I~LkV~-----~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~g  103 (200)
T 3pge_A           29 HINLKVS-----DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG  103 (200)
T ss_dssp             CEEEEEE-----CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSC
T ss_pred             eEEEEEe-----cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCc
Confidence            3566663     36899999999999999999999999999999999999999999999999999999999999865544


Q ss_pred             CC
Q 045158          249 RG  250 (252)
Q Consensus       249 ~~  250 (252)
                      |+
T Consensus       104 g~  105 (200)
T 3pge_A          104 GG  105 (200)
T ss_dssp             CC
T ss_pred             Cc
Confidence            43

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=98.69  E-value=4.1e-08  Score=77.69  Aligned_cols=77  Identities=12%  Similarity=0.139  Sum_probs=67.3

Q ss_pred             cceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeec
Q 045158          169 RLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVS  248 (252)
Q Consensus       169 ~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~  248 (252)
                      .|.+.|.     ..|..+.+.|.+++++..|++..+++.|+|+..++|.|+|+.+.++.|.+++++++||+|.++-- .+
T Consensus        57 ~InLKVk-----~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~le-Q~  130 (207)
T 3tix_A           57 HINLKVS-----DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHRE-QI  130 (207)
T ss_dssp             EEEEEEE-----CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCC-CC
T ss_pred             cEEEEEe-----cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEe-cc
Confidence            3555553     36899999999999999999999999999999999999999999999999999999999998643 34


Q ss_pred             CCC
Q 045158          249 RGG  251 (252)
Q Consensus       249 ~~~  251 (252)
                      ||+
T Consensus       131 GG~  133 (207)
T 3tix_A          131 GGL  133 (207)
T ss_dssp             TTG
T ss_pred             CCC
Confidence            444

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=98.67  E-value=1.7e-07  Score=68.78  Aligned_cols=72  Identities=22%  Similarity=0.371  Sum_probs=66.2

Q ss_pred             CcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           83 DKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        83 ~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      ..+.|.|+ .+|+.+.+.|.+++++..|+...+++.|+|+..++++|.|..|. +..|..++++.+|++|.+.+
T Consensus        39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~-~~~TP~dL~MEDgD~IdV~~  111 (115)
T 3kyd_D           39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIA-DNHTPKELGMEEEDVIEVYQ  111 (115)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECC-TTCCTTTTTCCTTCEEEEEE
T ss_pred             CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECC-CCCCHHHcCCCCCCEEEEEe
Confidence            45677777 46888999999999999999999999999999999999999996 88999999999999999987

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=98.67  E-value=1.6e-07  Score=66.26  Aligned_cols=63  Identities=16%  Similarity=0.145  Sum_probs=50.0

Q ss_pred             CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecC--CCCCccccccccCCcEEEEE
Q 045158            8 NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELV--DGLDMEDYPIVKEGTKIDLT   70 (252)
Q Consensus         8 ~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~--d~~~L~~~~i~~~~t~i~l~   70 (252)
                      ++..+.+.+.+.+||..+|++|++++|||+++|+|+|.|+.|.  .+.....|.-...+..+.|.
T Consensus        22 ~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~   86 (94)
T 4efo_A           22 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVV   86 (94)
T ss_dssp             TTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEE
T ss_pred             cceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEE
Confidence            7888999999999999999999999999999999999997655  44455566544333334444

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=98.61  E-value=1.1e-07  Score=75.29  Aligned_cols=80  Identities=15%  Similarity=0.260  Sum_probs=72.2

Q ss_pred             CCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeecccc
Q 045158           82 HDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRL  161 (252)
Q Consensus        82 ~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~  161 (252)
                      ...+.|.|+.+|+.+.+.|.+++++..|+...+++.|+|+..+++.|+|+.|. +..|..++++.+|++|++++    ++
T Consensus        55 ~e~InLKVk~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~-~ddTPeDLdMEDGDtIDV~l----eQ  129 (207)
T 3tix_A           55 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQ-ADQTPEDLDMEDNDIIEAHR----EQ  129 (207)
T ss_dssp             CCEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECC-SSCCTTTTTCCTTEEEEECC----CC
T ss_pred             CCcEEEEEecCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecC-CCCCHHHcCCCCCCEEEEEE----ec
Confidence            44577777767889999999999999999999999999999999999999996 88999999999999999998    67


Q ss_pred             CCCCc
Q 045158          162 RDNPP  166 (252)
Q Consensus       162 ~~~~~  166 (252)
                      .||..
T Consensus       130 ~GG~~  134 (207)
T 3tix_A          130 IGGLP  134 (207)
T ss_dssp             CTTGG
T ss_pred             cCCCc
Confidence            77754

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=98.43  E-value=1.9e-07  Score=64.37  Aligned_cols=68  Identities=9%  Similarity=0.062  Sum_probs=56.8

Q ss_pred             CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCee-----cCCCCCccccccccCCcEEEE
Q 045158            1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWE-----LVDGLDMEDYPIVKEGTKIDL   69 (252)
Q Consensus         1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~-----L~d~~~L~~~~i~~~~t~i~l   69 (252)
                      |.+.|+....++.+++++++|+.+|+.+|++.++++++.|.+.++-.+     +.++.+|+++||.+++. |.+
T Consensus         5 m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~-l~l   77 (80)
T 2pjh_A            5 IIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDL-LFL   77 (80)
T ss_dssp             CCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCC-EEC
T ss_pred             EEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCE-EEE
Confidence            567777777789999999999999999999999999999888776554     34677999999997777 543

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=98.34  E-value=2.8e-07  Score=63.49  Aligned_cols=71  Identities=14%  Similarity=0.193  Sum_probs=58.3

Q ss_pred             cEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECcee---c-ccccccccccCCCCCCEEEEE
Q 045158           84 KIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIE---L-DDEFRNLSEYGIREFSEIIVF  154 (252)
Q Consensus        84 ~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~---L-~~d~~~L~~y~i~~~s~i~l~  154 (252)
                      .|.|.|+.++.++.+++++++|+.+|+++|++.+++|++.|.+.++..+   | ..++.+|+++||++|+.|.+.
T Consensus         4 ~m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~   78 (80)
T 2pjh_A            4 SIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF   78 (80)
T ss_dssp             CCCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred             cEEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence            4777888766688899999999999999999999999998887765443   3 126789999999999999864

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=98.33  E-value=1.5e-06  Score=61.21  Aligned_cols=64  Identities=16%  Similarity=0.089  Sum_probs=49.2

Q ss_pred             eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecc-cccccccccCC-CCCCEEEEE
Q 045158           91 FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELD-DEFRNLSEYGI-REFSEIIVF  154 (252)
Q Consensus        91 ~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~-~d~~~L~~y~i-~~~s~i~l~  154 (252)
                      ..+..+.+.+.+++||..+|++|++++|||+.+|+|+|.|+.|. +....-..|.- ...+-|.|+
T Consensus        21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~   86 (94)
T 4efo_A           21 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVV   86 (94)
T ss_dssp             TTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEE
T ss_pred             ccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEE
Confidence            45778999999999999999999999999999999999997553 35555555543 333444444

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=98.30  E-value=9.3e-08  Score=76.66  Aligned_cols=79  Identities=11%  Similarity=0.126  Sum_probs=1.3

Q ss_pred             ccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCee
Q 045158          168 RRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTV  247 (252)
Q Consensus       168 ~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~  247 (252)
                      ..|++.| .    ..|+.+.+.|.++++...|++..+++.|+|++.++|.|+|+.+.++.|-+++++++||+|.++.- -
T Consensus        20 e~InLKV-~----qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~le-Q   93 (227)
T 3v7o_A           20 THINLKV-S----DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE-Q   93 (227)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CeEEEEE-e----CCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEec-c
Confidence            4466666 2    36889999999999999999999999999999999999999999999999999999999998744 3


Q ss_pred             cCCCC
Q 045158          248 SRGGY  252 (252)
Q Consensus       248 ~~~~~  252 (252)
                      +||+|
T Consensus        94 ~GG~~   98 (227)
T 3v7o_A           94 IGGLT   98 (227)
T ss_dssp             --CCC
T ss_pred             cCCch
Confidence            44443

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=98.25  E-value=1.4e-07  Score=75.61  Aligned_cols=79  Identities=13%  Similarity=0.214  Sum_probs=1.2

Q ss_pred             CCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeecccc
Q 045158           82 HDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRL  161 (252)
Q Consensus        82 ~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~  161 (252)
                      ...|.|.|..+|+.+.+.+.+++++..|+...+++.|+|++.+++.|+|+.+. +..|..++++.+|++|+++.    +.
T Consensus        19 ~e~InLKV~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~-dddTPadL~MEDGDtIDV~l----eQ   93 (227)
T 3v7o_A           19 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHR----EQ   93 (227)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCeEEEEEeCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecC-CCCCHHHcCCCCCCEEEEEe----cc
Confidence            44567777557888999999999999999999999999999999999999996 88999999999999999998    66


Q ss_pred             CCCC
Q 045158          162 RDNP  165 (252)
Q Consensus       162 ~~~~  165 (252)
                      .||.
T Consensus        94 ~GG~   97 (227)
T 3v7o_A           94 IGGL   97 (227)
T ss_dssp             --CC
T ss_pred             cCCc
Confidence            6764

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=98.21  E-value=1.4e-05  Score=53.60  Aligned_cols=70  Identities=19%  Similarity=0.254  Sum_probs=61.1

Q ss_pred             EEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCc-cEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           85 IHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIK-RMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        85 ~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~-~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      +.+..+. ....+.+.+.++.||..|-..-+.+.|||++ ..+|.|.|..|. ++.++.+|.+.+|+.|.+++
T Consensus        10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLd-p~~tp~DlemeD~D~IDvmL   81 (82)
T 3goe_A           10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLD-PNDQVQSTELEDEDQVSVVL   81 (82)
T ss_dssp             EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECC-TTSBGGGSSCCTTCEEEEEC
T ss_pred             HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccC-ccCChhhhCCcCCceeeeee
Confidence            3445553 3455888999999999999999999999999 899999999995 99999999999999999875

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=98.20  E-value=0.00014  Score=64.12  Aligned_cols=141  Identities=20%  Similarity=0.256  Sum_probs=107.0

Q ss_pred             EEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhC----CCCccEEEEE------CceecccccccccccCCCCCCEEEEE
Q 045158           85 IHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDG----TPIKRMLLFF------SGIELDDEFRNLSEYGIREFSEIIVF  154 (252)
Q Consensus        85 ~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~g----ip~~~q~L~~------~g~~L~~d~~~L~~y~i~~~s~i~l~  154 (252)
                      +.+.|.+.+-+-++.++++.||.++...|.++..    .+.++.-|++      .|.=|+ +.++|..|++.+++.+...
T Consensus         4 ~~~~~~~~~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~-~~~~l~~y~~~~~~~l~~~   82 (371)
T 3ivf_A            4 LSLKISIGNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLE-AGKALDYYMLRNGDTMEYR   82 (371)
T ss_dssp             EEEEEEETTEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECC-TTSBGGGGTCCTTCEEEEE
T ss_pred             EEEEEEecceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEecc-CCCCHHHhCCCCCceeecc
Confidence            3455555677789999999999999999988773    3678888998      344575 7789999999999998876


Q ss_pred             eeeccccCCCCccccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCc-eEEeecC---------eeec
Q 045158          155 LKTMNRLRDNPPIRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPRED-YIFIHKQ---------RIMR  224 (252)
Q Consensus       155 ~~~~~~~~~~~~~~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~-~~l~~~g---------~~l~  224 (252)
                      -++            +.+.|.    .++|....+.|+++.|+.++-+.|+++.|+.... +-|.+..         .-|+
T Consensus        83 ~~~------------~~~~V~----l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~  146 (371)
T 3ivf_A           83 KKQ------------RPLKIR----MLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLD  146 (371)
T ss_dssp             ECE------------EEEEEE----CTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCC
T ss_pred             Cce------------eEEEEE----CcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHh
Confidence            532            334443    5789999999999999999999999999997644 4444321         3455


Q ss_pred             CCccccccCCCCCCEEEE
Q 045158          225 DNCSLRWHGVEYGDILYV  242 (252)
Q Consensus       225 d~~tL~~y~I~~gsti~l  242 (252)
                      .++++.+.++.+..++++
T Consensus       147 ~~k~l~~q~~~~~~~l~f  164 (371)
T 3ivf_A          147 HGRTLREQGVEEHETLLL  164 (371)
T ss_dssp             TTSBTGGGTCCTTCEEEE
T ss_pred             cCchhHhhCCCCCceEEE
Confidence            667888887766667655

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=98.17  E-value=7.9e-06  Score=55.98  Aligned_cols=73  Identities=16%  Similarity=0.291  Sum_probs=60.3

Q ss_pred             ceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCC-----ceEEeecCeeecCCccccccCCCCCCEEEE
Q 045158          170 LSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPRE-----DYIFIHKQRIMRDNCSLRWHGVEYGDILYV  242 (252)
Q Consensus       170 ~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~-----~~~l~~~g~~l~d~~tL~~y~I~~gsti~l  242 (252)
                      +.+.|...-+.+.++++-++++...||..|.+.+.+..+++..     ..+..-++..|.++++|++|+|.+||.|.+
T Consensus         3 ~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei   80 (81)
T 2bps_A            3 SYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI   80 (81)
T ss_dssp             CEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred             cEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence            3444444334578999999999999999999999999877652     247777899999999999999999999986

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=98.15  E-value=8.6e-06  Score=54.67  Aligned_cols=61  Identities=13%  Similarity=0.081  Sum_probs=56.3

Q ss_pred             CceEEEEecCCCcHHHHHHHHhhcCCCCCC-ceEEeecCeeecCCccccccCCCCCCEEEEe
Q 045158          183 GASIPLEMQDSSTVNELRHLLLSSKILPRE-DYIFIHKQRIMRDNCSLRWHGVEYGDILYVF  243 (252)
Q Consensus       183 g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~-~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~  243 (252)
                      ...+.+.|.++.+|..|-+.-+.+.|||++ ..+|.|.|.-|+++.++++|++.+||.|.++
T Consensus        19 ~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvm   80 (82)
T 3goe_A           19 SEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVV   80 (82)
T ss_dssp             SCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeee
Confidence            456678899999999999999999999999 8999999999999999999999999999764

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=98.11  E-value=1.7e-05  Score=56.41  Aligned_cols=72  Identities=17%  Similarity=0.222  Sum_probs=62.9

Q ss_pred             ccceeeEEeeeeccCC-ceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEe
Q 045158          168 RRLSFKVQTSSSLLNG-ASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVF  243 (252)
Q Consensus       168 ~~~~i~v~~~~~~~~g-~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~  243 (252)
                      ..+.+.|+.    -.| ..+.+.|.++++...|.+.-+++.|+++...+|.|+|..+.++.|-++.++++||+|.++
T Consensus        24 ~~I~LkV~~----~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~   96 (97)
T 2jxx_A           24 QQLQLRVQG----KEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW   96 (97)
T ss_dssp             SEEEEEEEE----SSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred             CeEEEEEEc----CCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            345556553    245 478899999999999999999999999999999999999999999999999999999875

>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}

Probab=98.00  E-value=0.00029  Score=65.11  Aligned_cols=204  Identities=12%  Similarity=0.120  Sum_probs=135.5

Q ss_pred             EEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCe-------e-cC-----CCCCccccccccCCcEEEEEecCCC----
Q 045158           13 VLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGW-------E-LV-----DGLDMEDYPIVKEGTKIDLTINPFL----   75 (252)
Q Consensus        13 ~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~-------~-L~-----d~~~L~~~~i~~~~t~i~l~~~~~~----   75 (252)
                      .+.|..++|+.+||..|++..|+|+++|||.....       + +-     .+.++.++.-.....++.|-+..+.    
T Consensus        39 ~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~~~~~~~lflE~~~~~~~~~  118 (530)
T 2ylm_A           39 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSDNENPWTIFLETVDPELAAS  118 (530)
T ss_dssp             EEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHTSCSSEEEEEEECCHHHHTT
T ss_pred             eEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhccCCceEEEEEecccccCCc
Confidence            57899999999999999999999999999975421       1 11     1112333221212233555443221    


Q ss_pred             --C-ccCCcCCcEEEEEE-e-C-CcEE----EEeeCCCccHHHHHHHHHHHhCCCCccEEEEECc------eeccccccc
Q 045158           76 --Q-SSFNQHDKIHIIIK-F-P-SRKF----NIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSG------IELDDEFRN  139 (252)
Q Consensus        76 --~-~~~~~~~~~~i~v~-~-~-g~~~----~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g------~~L~~d~~~  139 (252)
                        + .+......+-||+| + + .+++    .+.|+.+++|.+|-..|.++.|+|++.-..+|.-      ..|.+...|
T Consensus       119 ~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t  198 (530)
T 2ylm_A          119 GATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVS  198 (530)
T ss_dssp             TCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSB
T ss_pred             cccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEccccccc
Confidence              1 11233456899999 5 2 3443    3678899999999999999999999987777642      345325789


Q ss_pred             cccc--CCCCCCEEEEEeeeccccCCCCcc---------ccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCC
Q 045158          140 LSEY--GIREFSEIIVFLKTMNRLRDNPPI---------RRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKI  208 (252)
Q Consensus       140 L~~y--~i~~~s~i~l~~~~~~~~~~~~~~---------~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~g  208 (252)
                      +.+.  .+.+|+.|..-.....+.....+.         ..+.|.+++. +..+...+.+++....|-.++-+.+.+..|
T Consensus       199 ~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~-~~~~~~~F~l~Ls~~~~Y~~la~~va~~l~  277 (530)
T 2ylm_A          199 LDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDK-TIPNDPGFVVTLSNRMNYFQVAKTVAQRLN  277 (530)
T ss_dssp             HHHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEET-TSTTCCCEEEEEETTCCHHHHHHHHHHHHT
T ss_pred             HHHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeec-CCCCCCCeEEEECCCCCHHHHHHHHHHHhC
Confidence            9999  999999887765321000000010         1133333332 123467799999999999999999999999


Q ss_pred             CCCCceEEe
Q 045158          209 LPREDYIFI  217 (252)
Q Consensus       209 ip~~~~~l~  217 (252)
                      +.++..+|.
T Consensus       278 ~dP~~lRf~  286 (530)
T 2ylm_A          278 TDPMLLQFF  286 (530)
T ss_dssp             SCGGGEEEE
T ss_pred             CCchhEEEE
Confidence            999888875

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=97.87  E-value=0.0011  Score=58.42  Aligned_cols=139  Identities=20%  Similarity=0.174  Sum_probs=104.3

Q ss_pred             EEeCCeEEEEEecCCCcHHHHHHHHHHHhC----CCCCceEEEE------cCeecCCCCCccccccccCCcEEEEEecCC
Q 045158            5 IVANGHEFVLEVGLQEPVLEIKRKIEQIFN----IPATSQTLAV------SGWELVDGLDMEDYPIVKEGTKIDLTINPF   74 (252)
Q Consensus         5 v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~----i~~~~q~L~~------~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~   74 (252)
                      |...+.+-++..+|+.||.++-..|.++..    .++++--|+.      .|.-|++.++|..|++.++.. +...    
T Consensus         8 ~~~~~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~-l~~~----   82 (371)
T 3ivf_A            8 ISIGNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDT-MEYR----   82 (371)
T ss_dssp             EEETTEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCE-EEEE----
T ss_pred             EEecceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCce-eecc----
Confidence            333577788999999999999999988874    3567777887      466799999999999997765 5543    


Q ss_pred             CCccCCcCCcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCc-cEEEEECc---------eeccccccccccc
Q 045158           75 LQSSFNQHDKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIK-RMLLFFSG---------IELDDEFRNLSEY  143 (252)
Q Consensus        75 ~~~~~~~~~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~-~q~L~~~g---------~~L~~d~~~L~~y  143 (252)
                             ...+.+.|.+ +|....+.++++.|+.++-..|.++.|+... ..-|.+..         .-| +..+++.+.
T Consensus        83 -------~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL-~~~k~l~~q  154 (371)
T 3ivf_A           83 -------KKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWL-DHGRTLREQ  154 (371)
T ss_dssp             -------ECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CC-CTTSBTGGG
T ss_pred             -------CceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHH-hcCchhHhh
Confidence                   3356788885 6888999999999999999999999998643 35565432         134 355677777


Q ss_pred             CCCCCCEEEEEee
Q 045158          144 GIREFSEIIVFLK  156 (252)
Q Consensus       144 ~i~~~s~i~l~~~  156 (252)
                      +.....++.+..+
T Consensus       155 ~~~~~~~l~frvK  167 (371)
T 3ivf_A          155 GVEEHETLLLRRK  167 (371)
T ss_dssp             TCCTTCEEEEEEC
T ss_pred             CCCCCceEEEEEE
Confidence            7666667766543

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=97.87  E-value=1.5e-05  Score=59.35  Aligned_cols=67  Identities=19%  Similarity=0.330  Sum_probs=55.1

Q ss_pred             eccCCceEEEEecCCCcHHHHHHHHhhcCCCCCC-ceEEee--------------------------------------c
Q 045158          179 SLLNGASIPLEMQDSSTVNELRHLLLSSKILPRE-DYIFIH--------------------------------------K  219 (252)
Q Consensus       179 ~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~-~~~l~~--------------------------------------~  219 (252)
                      .++.|...++.|+.+.+|.+++..|+.+.||+.. .|-|..                                      .
T Consensus        17 ~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~dd~   96 (128)
T 2kc2_A           17 RMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHTDDE   96 (128)
T ss_dssp             ECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCCSSS
T ss_pred             EcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcccCC
Confidence            3689999999999999999999999999999844 344432                                      1


Q ss_pred             CeeecCCccccccCCCCCCEEEEecC
Q 045158          220 QRIMRDNCSLRWHGVEYGDILYVFKG  245 (252)
Q Consensus       220 g~~l~d~~tL~~y~I~~gsti~l~~~  245 (252)
                      +.-|++++||.++||.+++|+.|-+.
T Consensus        97 ~~WLD~srtL~EQGI~e~~tllLRrK  122 (128)
T 2kc2_A           97 LNWLDHGRTLREQGVEEHETLLLRRK  122 (128)
T ss_dssp             EEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred             CCcccCCCcHHHcCCCCCCEEEEEEE
Confidence            25778899999999999999988543

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=97.82  E-value=9.6e-05  Score=51.31  Aligned_cols=77  Identities=12%  Similarity=0.107  Sum_probs=68.4

Q ss_pred             ceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecC
Q 045158          170 LSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSR  249 (252)
Q Consensus       170 ~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~  249 (252)
                      |.+.|-    ..+|++.++.|.++.++.++-++.++++|+.++++.|.|+++.++-+-.++--|+-+|++++|+..+-++
T Consensus        10 m~v~Vl----~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~s~   85 (90)
T 2al3_A           10 SAVSVL----APNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSRSR   85 (90)
T ss_dssp             CCEEEE----CTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSSCC
T ss_pred             cEEEEE----cCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccCCC
Confidence            555553    2578999999999999999999999999999999999999999999999999999999999999876665


Q ss_pred             C
Q 045158          250 G  250 (252)
Q Consensus       250 ~  250 (252)
                      .
T Consensus        86 ~   86 (90)
T 2al3_A           86 E   86 (90)
T ss_dssp             -
T ss_pred             c
Confidence            4

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=97.80  E-value=0.00014  Score=51.55  Aligned_cols=72  Identities=14%  Similarity=0.310  Sum_probs=63.1

Q ss_pred             CCcEEEEEE-eCC-cEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEE
Q 045158           82 HDKIHIIIK-FPS-RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVF  154 (252)
Q Consensus        82 ~~~~~i~v~-~~g-~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~  154 (252)
                      ...+.|.|+ ..| +.+.+.+..+++...|...-+++.|++++..++.|.|..|. +..|-.++++.+|++|.+.
T Consensus        23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~-~~~TP~dLdMEDgD~IDv~   96 (97)
T 2jxx_A           23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLS-GRELPADLGMESGDLIEVW   96 (97)
T ss_dssp             CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECC-SCSCHHHHTCCTTEEEEEE
T ss_pred             CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEe
Confidence            345666666 356 47899999999999999999999999999999999999996 8899999999999999874

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=97.79  E-value=0.0001  Score=59.86  Aligned_cols=74  Identities=14%  Similarity=0.258  Sum_probs=66.3

Q ss_pred             CCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           82 HDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        82 ~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      +..+.|.|+..++.+.+.+..+++...|+...+++.|+|++++++.|.|+.+. +..+-.+..+.++++|.+...
T Consensus        19 ~~~i~ikv~~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~-~~~Tpk~L~~ed~d~I~~~~e   92 (209)
T 3uf8_A           19 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHRE   92 (209)
T ss_dssp             CSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECC-TTCCTTTTTCCTTEEEEEECS
T ss_pred             CCcEEEEEEcCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEecc-CCCChHHhhhcccccchhhcc
Confidence            44566666656778899999999999999999999999999999999999996 889999999999999999884

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=97.77  E-value=0.00011  Score=50.98  Aligned_cols=74  Identities=9%  Similarity=-0.008  Sum_probs=65.5

Q ss_pred             CCcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           82 HDKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        82 ~~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      .+.|.+.|-. +++...+.|.++.|+.++=+...+++|+.+++..|.|+++.| |-+.++.-.|+.+|+.+.|+.+
T Consensus         7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~l-DLSlpfRlsgLpnnAkLELv~~   81 (90)
T 2al3_A            7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVL-DLSLQWRFANLPNNAKLEMVPV   81 (90)
T ss_dssp             ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEE-SSSCBHHHHCCCSSCEEEEECS
T ss_pred             CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEec-cccceeEecCCCCCCEEEEEEc
Confidence            3457888884 688999999999999999999999999999999999999999 5889999999999999999864

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=97.76  E-value=8.2e-05  Score=60.49  Aligned_cols=73  Identities=11%  Similarity=0.161  Sum_probs=64.9

Q ss_pred             ceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCee
Q 045158          170 LSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTV  247 (252)
Q Consensus       170 ~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~  247 (252)
                      +.+.|+     ..|..+.+.|..+++...|++..+++.|+|+++++|.|+|+.+.++.|-.+.+..++|+|.++....
T Consensus        22 i~ikv~-----~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~   94 (209)
T 3uf8_A           22 INLKVS-----DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI   94 (209)
T ss_dssp             EEEEEE-----CSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCT
T ss_pred             EEEEEE-----cCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcccc
Confidence            555554     2577888999999999999999999999999999999999999999999999999999999875443

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=97.58  E-value=9.5e-06  Score=70.74  Aligned_cols=74  Identities=14%  Similarity=0.258  Sum_probs=0.0

Q ss_pred             CCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           82 HDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        82 ~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      ...+.|.|+..|+.+.+.+..+++...|+...+++.|++++.+++.|+|+.+. ++.|.+++++.+|++|+++..
T Consensus        19 ~~~I~LKV~~~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~-~~~TP~~L~MEDgD~Idv~~~   92 (360)
T 3ix6_A           19 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHRE   92 (360)
T ss_dssp             ---------------------------------------------------------------------------
T ss_pred             CCeEEEEEecCCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECC-CCCChHHcCCCccchhhhhhc
Confidence            33456666656778899999999999999999999999999999999999996 889999999999999999983

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=97.56  E-value=0.00074  Score=47.29  Aligned_cols=71  Identities=14%  Similarity=0.187  Sum_probs=65.3

Q ss_pred             cEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           84 KIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        84 ~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      .+.|.|+..|..+.+.+..++....|...-+++.|++++..++.|.|..+. +..|-.+.++.++++|.+++
T Consensus        21 ~IniKV~~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~-~~~TP~~L~meD~DiID~~~   91 (95)
T 2l76_A           21 LFPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELS-PTATPRTLKLGVADIIDCVV   91 (95)
T ss_dssp             CEEEEEECSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECC-TTSCHHHHTCCSSCEEEEEE
T ss_pred             eEEEEEEcCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCC-CCCCHhHcCCCCCCEEEEEE
Confidence            367777767888999999999999999999999999999999999999996 88999999999999999886

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=97.55  E-value=1.1e-05  Score=70.34  Aligned_cols=72  Identities=11%  Similarity=0.170  Sum_probs=0.0

Q ss_pred             cceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecC
Q 045158          169 RLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKG  245 (252)
Q Consensus       169 ~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~  245 (252)
                      .+.+.|+.     .|+.+.+.|.++++...|++..+++.|++++.++|.|+|+.+.++.|.+++++++||+|.++..
T Consensus        21 ~I~LKV~~-----~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~   92 (360)
T 3ix6_A           21 HINLKVSD-----GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE   92 (360)
T ss_dssp             -----------------------------------------------------------------------------
T ss_pred             eEEEEEec-----CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhc
Confidence            35556542     4788889999999999999999999999999999999999999999999999999999998743

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=97.52  E-value=0.00045  Score=48.39  Aligned_cols=63  Identities=8%  Similarity=0.102  Sum_probs=59.7

Q ss_pred             cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEe
Q 045158          181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVF  243 (252)
Q Consensus       181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~  243 (252)
                      ..|...-+.+..++.-..|.+.-+++.|++++..+|.|+|..+.++.|=++.+..+||+|..+
T Consensus        28 ~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~   90 (95)
T 2l76_A           28 CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCV   90 (95)
T ss_dssp             CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEE
T ss_pred             cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEE
Confidence            358888999999999999999999999999999999999999999999999999999999876

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=97.43  E-value=0.00038  Score=47.58  Aligned_cols=68  Identities=13%  Similarity=0.192  Sum_probs=54.8

Q ss_pred             EEEEEEe---CCcEEEEeeCCCccHHHHHHHHHHHhCCCCc-----cEEEEECceecccccccccccCCCCCCEEEE
Q 045158           85 IHIIIKF---PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIK-----RMLLFFSGIELDDEFRNLSEYGIREFSEIIV  153 (252)
Q Consensus        85 ~~i~v~~---~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~-----~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l  153 (252)
                      +.|++.+   .++.+.+.++...||..|++.+.+..+++..     ..++.-.+..|. ++..|++|+|.+|+.|.+
T Consensus         5 I~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~-~~~~L~d~~ItnGD~Lei   80 (81)
T 2bps_A            5 IDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFS-GECKLSDCGITNGDRLEI   80 (81)
T ss_dssp             EEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEE-TTSBTGGGTCCTTCEEEE
T ss_pred             EEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEc-CCCEEeeCCcCCCCEEEE
Confidence            4555554   6899999999999999999999999987642     223444667885 889999999999999875

>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}

Probab=97.43  E-value=0.011  Score=54.59  Aligned_cols=214  Identities=10%  Similarity=0.046  Sum_probs=131.4

Q ss_pred             CeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEE----EcCee---c--CCCCCcccccccc---C-CcEEEEEecCCC
Q 045158            9 GHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLA----VSGWE---L--VDGLDMEDYPIVK---E-GTKIDLTINPFL   75 (252)
Q Consensus         9 g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~----~~g~~---L--~d~~~L~~~~i~~---~-~t~i~l~~~~~~   75 (252)
                      ...|.++++..+|-.+|.++|++..++.|...||+    |.+.+   +  ..+.+|.+.=-..   . .......+    
T Consensus       252 ~~~F~l~Ls~~~~Y~~la~~va~~l~~dP~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~l~~~~~~~~~~l~YevL----  327 (530)
T 2ylm_A          252 DPGFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQL----  327 (530)
T ss_dssp             CCCEEEEEETTCCHHHHHHHHHHHHTSCGGGEEEECCCTTSCSCCSBCCTTCCSCHHHHSTTSCSSSCCEEEEEEC----
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHhCCCchhEEEEecccccCCCCCccccCCCCcHHHHhhcccCCCCCeEEEEEC----
Confidence            56699999999999999999999999999987765    12321   1  1222333221100   0 11111111    


Q ss_pred             CccCC---cCCcEEEEEEeCC---cEEEEeeCCCccHHHHHHHHHHHhCCC---CccEEEE--ECce---eccccccccc
Q 045158           76 QSSFN---QHDKIHIIIKFPS---RKFNIDVDRTDTVRSLKEKIHIIDGTP---IKRMLLF--FSGI---ELDDEFRNLS  141 (252)
Q Consensus        76 ~~~~~---~~~~~~i~v~~~g---~~~~l~v~~~~TV~~lK~~I~~~~gip---~~~q~L~--~~g~---~L~~d~~~L~  141 (252)
                      +.++.   ....+.|+...++   ..+.+.+..+.||.+|-+.++.+.+++   ....+|.  ++++   .+. ++.+++
T Consensus       328 ~ipl~ElE~~r~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~-~~~~i~  406 (530)
T 2ylm_A          328 KMKITDFENRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQ-EDELLE  406 (530)
T ss_dssp             SSCHHHHHSBCCEEEEEECTTSCEEEEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEEC-TTSBGG
T ss_pred             CCCHHHHhhCceEEEEEECCCCceEEEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecC-CCcccc
Confidence            11221   3445666444222   357888889999999999999999987   4566664  6776   554 666777


Q ss_pred             ccCCCCCCEEEEEeeeccccCCCCccccceeeEEeeeec---cCCceEEEEecCCCcHHHHHHHHhhcCCCCCC---ceE
Q 045158          142 EYGIREFSEIIVFLKTMNRLRDNPPIRRLSFKVQTSSSL---LNGASIPLEMQDSSTVNELRHLLLSSKILPRE---DYI  215 (252)
Q Consensus       142 ~y~i~~~s~i~l~~~~~~~~~~~~~~~~~~i~v~~~~~~---~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~---~~~  215 (252)
                      ...-....++.+..-|.... .-+.....-|.|..+.+.   ..|.-+.+.|.+.+|.+++|+.|+++.|+|..   ++.
T Consensus       407 ~i~d~~~~~~rieeip~ee~-~~~~~~~~li~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~keF~K~K  485 (530)
T 2ylm_A          407 CLSPATSRTFRIEEIPLDQV-DIDKENEMLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFK  485 (530)
T ss_dssp             GSCCCTTCEEEEEECCGGGS-SCCTTTEEEEEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCCHHHHTTCE
T ss_pred             cccccccceEEEEECCHHHh-ccCCCCcEEEEEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCCHhhhhhEE
Confidence            65444477787765443111 110122233344333322   24666778899999999999999999999954   444


Q ss_pred             --EeecC--eeecCCcc
Q 045158          216 --FIHKQ--RIMRDNCS  228 (252)
Q Consensus       216 --l~~~g--~~l~d~~t  228 (252)
                        ++-.+  +.++|+..
T Consensus       486 fa~v~~~~~~yl~d~d~  502 (530)
T 2ylm_A          486 FAIVMMGRHQYINEDEY  502 (530)
T ss_dssp             EEEEETTEEEECCTTTC
T ss_pred             EEEEECCcccccCCccc
Confidence              34333  45666543

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=97.33  E-value=0.00029  Score=52.41  Aligned_cols=69  Identities=23%  Similarity=0.191  Sum_probs=54.8

Q ss_pred             EEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCc-------------------------------------cEEEE
Q 045158           86 HIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIK-------------------------------------RMLLF  127 (252)
Q Consensus        86 ~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~-------------------------------------~q~L~  127 (252)
                      .+.|+ .+|+..++.|+.+.||.+++..|+.+.||+..                                     +|+|.
T Consensus        13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~   92 (128)
T 2kc2_A           13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH   92 (128)
T ss_dssp             EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred             cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence            57888 47889999999999999999999999999844                                     22232


Q ss_pred             E--CceecccccccccccCCCCCCEEEEEe
Q 045158          128 F--SGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus       128 ~--~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      .  ...-| |++++|.++||.+++++.|-.
T Consensus        93 ~dd~~~WL-D~srtL~EQGI~e~~tllLRr  121 (128)
T 2kc2_A           93 TDDELNWL-DHGRTLREQGVEEHETLLLRR  121 (128)
T ss_dssp             CSSSEEEE-CSSSCHHHHTCCTTSEEEEEE
T ss_pred             ccCCCCcc-cCCCcHHHcCCCCCCEEEEEE
Confidence            1  11345 588999999999999987764

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=97.22  E-value=4.8e-05  Score=67.67  Aligned_cols=68  Identities=9%  Similarity=0.126  Sum_probs=0.0

Q ss_pred             CCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecC
Q 045158          182 NGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSR  249 (252)
Q Consensus       182 ~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~  249 (252)
                      .|..+.+.|..+++...|++..+++.|+|+.+++|.|+|+.+.++.|-++.++++||+|.++..-..|
T Consensus        38 ~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg  105 (389)
T 4da1_A           38 GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGG  105 (389)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccc
Confidence            57788899999999999999999999999999999999999999999999999999999988554433

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=97.10  E-value=7.6e-05  Score=66.35  Aligned_cols=73  Identities=14%  Similarity=0.256  Sum_probs=0.0

Q ss_pred             cEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeee
Q 045158           84 KIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKT  157 (252)
Q Consensus        84 ~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~  157 (252)
                      .+.|.|+..+..+.+.+..+++...|+...+++.|+|+..+++.|+|+.+. +..|-.++++.+|++|.+..+.
T Consensus        30 ~i~lkv~~~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~-~~~Tp~~l~med~d~i~~~~~q  102 (389)
T 4da1_A           30 HINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQAPEDLDMEDNDIIEAHREQ  102 (389)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             cEEEEEecCCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcC-CCCCHHHcCCCCCCEeeeeecc
Confidence            344555445677889999999999999999999999999999999999996 8899999999999999999853

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=96.93  E-value=0.0059  Score=41.86  Aligned_cols=72  Identities=11%  Similarity=0.129  Sum_probs=59.3

Q ss_pred             CcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEE--ECceecc--cccccccccCCCCCCEEEEEe
Q 045158           83 DKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF--FSGIELD--DEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        83 ~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~--~~g~~L~--~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      +...|-|++ +|+.+.-.+..++||.+|..-|.. .+.+.....|+  |-.+.+.  |.+.+|.+.|+.+.++|.+..
T Consensus         6 ~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~   82 (84)
T 3qx1_A            6 PVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA   82 (84)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred             CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence            346788886 577888889999999999999998 67778888888  5567773  456899999999999998864

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=96.81  E-value=0.0073  Score=41.38  Aligned_cols=63  Identities=17%  Similarity=0.179  Sum_probs=51.5

Q ss_pred             ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEe--ecCeee---cCCccccccCCCCCCEEEEe
Q 045158          180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFI--HKQRIM---RDNCSLRWHGVEYGDILYVF  243 (252)
Q Consensus       180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~--~~g~~l---~d~~tL~~y~I~~gsti~l~  243 (252)
                      ..+|+.+.-.-..++||.+|+..|.. .+.+...+.|.  |..+.+   +.+.||.+.|+.+.++|++=
T Consensus        14 lpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve   81 (84)
T 3qx1_A           14 TPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE   81 (84)
T ss_dssp             CTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence            45788887778889999999999988 56777778777  456777   45689999999999999873

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=96.73  E-value=0.0053  Score=45.82  Aligned_cols=64  Identities=17%  Similarity=0.261  Sum_probs=48.9

Q ss_pred             CceEEEEecCCCcHHHHHHHHhhc--CCCCCC------ceEEee----cCe-eecCC-------------ccccccCCCC
Q 045158          183 GASIPLEMQDSSTVNELRHLLLSS--KILPRE------DYIFIH----KQR-IMRDN-------------CSLRWHGVEY  236 (252)
Q Consensus       183 g~~~~l~v~~~~tV~~Lk~~i~~~--~gip~~------~~~l~~----~g~-~l~d~-------------~tL~~y~I~~  236 (252)
                      ...+++.|-..|||..+|++|-+.  .|+|.+      ..-|.+    .|+ .|.|.             +||+.|+|.+
T Consensus        40 ~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D  119 (138)
T 2r2o_A           40 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD  119 (138)
T ss_dssp             CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred             CCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence            467889999999999999999876  477754      455655    233 35552             4999999999


Q ss_pred             CCEEEEecCe
Q 045158          237 GDILYVFKGT  246 (252)
Q Consensus       237 gsti~l~~~~  246 (252)
                      |+++-|++..
T Consensus       120 ga~l~l~~~~  129 (138)
T 2r2o_A          120 GATVALVPCL  129 (138)
T ss_dssp             TCEEEEEEC-
T ss_pred             CCEEEEEECC
Confidence            9999998643

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=96.57  E-value=0.011  Score=42.51  Aligned_cols=62  Identities=18%  Similarity=0.325  Sum_probs=44.3

Q ss_pred             CceEEEEecCCCcHHHHHHHHhhc--CCCCCC------ceEEee----cCeeecC--------C-----ccccccCCCCC
Q 045158          183 GASIPLEMQDSSTVNELRHLLLSS--KILPRE------DYIFIH----KQRIMRD--------N-----CSLRWHGVEYG  237 (252)
Q Consensus       183 g~~~~l~v~~~~tV~~Lk~~i~~~--~gip~~------~~~l~~----~g~~l~d--------~-----~tL~~y~I~~g  237 (252)
                      +..+++.|-..|||..+|++|-+.  .|.|.+      .+.|.+    .|+.|.|        +     +||+.|+|.+|
T Consensus        23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg  102 (111)
T 4e71_A           23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG  102 (111)
T ss_dssp             CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred             CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence            556788899999999999999765  477654      456665    2355555        1     59999999999


Q ss_pred             CEEEEec
Q 045158          238 DILYVFK  244 (252)
Q Consensus       238 sti~l~~  244 (252)
                      +++-|++
T Consensus       103 atl~l~~  109 (111)
T 4e71_A          103 ATLILSK  109 (111)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEEe
Confidence            9998874

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=96.50  E-value=0.017  Score=41.64  Aligned_cols=74  Identities=12%  Similarity=0.166  Sum_probs=61.4

Q ss_pred             CcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEE--ECceecc--cccccccccCCCCCCEEEEEee
Q 045158           83 DKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF--FSGIELD--DEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        83 ~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~--~~g~~L~--~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      ....|-|++ +|+.+.-.+..++||.+|.+-|....+.+.....|+  |-.+.+.  |.+.+|.+.|+.+.++|.+...
T Consensus        12 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~   90 (109)
T 2dzk_A           12 TIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA   90 (109)
T ss_dssp             CCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred             CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence            457889996 688899999999999999999999888876777776  5677775  3468999999999999888763

>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}

Probab=96.16  E-value=0.016  Score=38.77  Aligned_cols=57  Identities=16%  Similarity=0.219  Sum_probs=44.7

Q ss_pred             ceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCCC
Q 045158          184 ASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGGY  252 (252)
Q Consensus       184 ~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~~  252 (252)
                      ....++++...||++|-+++    |+|++.....-+|+....+.      +.+||+|.++  ++.+||.
T Consensus        11 ~~~~~ev~~g~Tv~dLL~~L----gl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv--~~V~G~~   67 (74)
T 2l32_A           11 ETSEVAVDDDGTYADLVRAV----DLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVL--RLIKGGL   67 (74)
T ss_dssp             SEEEEECSTTCSHHHHHHTT----CCCSSCCCEECCCCCCCTTS------SSCCCCEEEC--SSCSCC-
T ss_pred             cceeEEcCCCCcHHHHHHHc----CCCcceEEEEECCEECCHHH------CCCCCEEEEE--Eeecccc
Confidence            34458899889999887665    99999888888998777666      4459999998  7777773

>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2

Probab=96.12  E-value=0.066  Score=35.15  Aligned_cols=66  Identities=26%  Similarity=0.344  Sum_probs=47.6

Q ss_pred             ceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecC
Q 045158          170 LSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSR  249 (252)
Q Consensus       170 ~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~  249 (252)
                      |++.|..     ......+++....||.+|.+.+    +++.....+..+|.....+.     -+++||.|.++  +..+
T Consensus         5 m~i~vNg-----~~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii--~~V~   68 (70)
T 1ryj_A            5 MKFTVIT-----DDGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVI--RVIY   68 (70)
T ss_dssp             EEEEEEE-----TTEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEE--ECTT
T ss_pred             EEEEEeC-----ccCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEE--eccc
Confidence            5666542     1223456777778999999987    56777778888998877654     68999999998  4455


Q ss_pred             CC
Q 045158          250 GG  251 (252)
Q Consensus       250 ~~  251 (252)
                      ||
T Consensus        69 GG   70 (70)
T 1ryj_A           69 GG   70 (70)
T ss_dssp             CC
T ss_pred             cC
Confidence            55

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=96.10  E-value=0.042  Score=39.51  Aligned_cols=63  Identities=25%  Similarity=0.308  Sum_probs=44.1

Q ss_pred             CcEEEEeeCCCccHHHHHHHHHHHh--CCCCc------cEEEEE----Cceeccccc------------ccccccCCCCC
Q 045158           93 SRKFNIDVDRTDTVRSLKEKIHIID--GTPIK------RMLLFF----SGIELDDEF------------RNLSEYGIREF  148 (252)
Q Consensus        93 g~~~~l~v~~~~TV~~lK~~I~~~~--gip~~------~q~L~~----~g~~L~~d~------------~~L~~y~i~~~  148 (252)
                      +..+++.|-.-|||.++|++|-+..  |.|.+      ...|-|    .|+.|.|.+            +||+.|+|.+|
T Consensus        23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg  102 (111)
T 4e71_A           23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG  102 (111)
T ss_dssp             CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred             CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence            4558888888999999999998765  66644      556776    345565211            58999999999


Q ss_pred             CEEEEEe
Q 045158          149 SEIIVFL  155 (252)
Q Consensus       149 s~i~l~~  155 (252)
                      +++.|+-
T Consensus       103 atl~l~~  109 (111)
T 4e71_A          103 ATLILSK  109 (111)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEEe
Confidence            9998753

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=95.92  E-value=0.034  Score=40.02  Aligned_cols=65  Identities=11%  Similarity=0.100  Sum_probs=53.6

Q ss_pred             ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEe--ecCeeec---CCccccccCCCCCCEEEEec
Q 045158          180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFI--HKQRIMR---DNCSLRWHGVEYGDILYVFK  244 (252)
Q Consensus       180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~--~~g~~l~---d~~tL~~y~I~~gsti~l~~  244 (252)
                      ..+|.++.-.-..++|+.+|++.|....+.+...+.|.  |..+++.   .+.||.+.|+.+..+|++-.
T Consensus        20 lpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~   89 (109)
T 2dzk_A           20 LPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP   89 (109)
T ss_dssp             CSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence            46788888888999999999999988877776777666  4567776   36899999999999988764

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=95.91  E-value=0.028  Score=41.51  Aligned_cols=73  Identities=19%  Similarity=0.288  Sum_probs=60.4

Q ss_pred             CCcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEE--ECceec--ccccccccccCCCCCCEEEEEe
Q 045158           82 HDKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF--FSGIEL--DDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        82 ~~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~--~~g~~L--~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      .....|-|++ +|..+.-.+..++||.+|..-|... +.+.....|+  |-.+.|  .|.+.+|.+.|+.+.++|.+.-
T Consensus        41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~  118 (124)
T 1wj4_A           41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE  118 (124)
T ss_dssp             SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence            4567899996 5888888999999999999999887 7777778887  567888  4457899999999988888754

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=95.59  E-value=0.1  Score=42.21  Aligned_cols=62  Identities=16%  Similarity=0.222  Sum_probs=51.5

Q ss_pred             EEEEeeCCCccHHHHHHHHHHHhCCCCc-cEEEEE---Cc--eecccccccccccCCCCCCEEEEEee
Q 045158           95 KFNIDVDRTDTVRSLKEKIHIIDGTPIK-RMLLFF---SG--IELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        95 ~~~l~v~~~~TV~~lK~~I~~~~gip~~-~q~L~~---~g--~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      .+++.++..+||.+|+..+.+.+++|.+ ..||..   .+  ..|.+++.+|.++++.++..|.+.++
T Consensus       141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r  208 (217)
T 4a3p_A          141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQK  208 (217)
T ss_dssp             EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEEC
T ss_pred             ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEe
Confidence            3678889999999999999999999987 577763   22  35654467999999999999999983

>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2

Probab=95.54  E-value=0.046  Score=37.70  Aligned_cols=70  Identities=16%  Similarity=0.186  Sum_probs=46.2

Q ss_pred             ccccceeeEEeeeeccCCceEEEEecCC-CcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEec
Q 045158          166 PIRRLSFKVQTSSSLLNGASIPLEMQDS-STVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFK  244 (252)
Q Consensus       166 ~~~~~~i~v~~~~~~~~g~~~~l~v~~~-~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~  244 (252)
                      ....|+|.|       +|+.+.  +... .||.+|.+.+    +++.....+..+|+.... ....++-+++||.|.+++
T Consensus        17 ~~~~M~I~v-------NGe~~e--l~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~-~~~~~~~L~dGD~Vei~~   82 (87)
T 1tyg_B           17 IGGRHMLQL-------NGKDVK--WKKDTGTIQDLLASY----QLENKIVIVERNKEIIGK-ERYHEVELCDRDVIEIVH   82 (87)
T ss_dssp             -----CEEE-------TTEEEC--CSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECG-GGTTTSBCCSSSEEEEEE
T ss_pred             CCcceEEEE-------CCEEEE--CCCCCCcHHHHHHHh----CCCCCCEEEEECCEECCh-hhcCCcCCCCCCEEEEEc
Confidence            344466665       476544  4565 7999999887    577777778888876543 355567899999999984


Q ss_pred             CeecCCC
Q 045158          245 GTVSRGG  251 (252)
Q Consensus       245 ~~~~~~~  251 (252)
                        ..+||
T Consensus        83 --~V~GG   87 (87)
T 1tyg_B           83 --FVGGG   87 (87)
T ss_dssp             --ECCC-
T ss_pred             --ccccC
Confidence              55555

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=95.35  E-value=0.085  Score=38.75  Aligned_cols=63  Identities=24%  Similarity=0.306  Sum_probs=47.5

Q ss_pred             CCceEEEEecCCCcHHHHHHHHhhc--CCCCC------CceEEee----cCe-eecC---------C----ccccccCCC
Q 045158          182 NGASIPLEMQDSSTVNELRHLLLSS--KILPR------EDYIFIH----KQR-IMRD---------N----CSLRWHGVE  235 (252)
Q Consensus       182 ~g~~~~l~v~~~~tV~~Lk~~i~~~--~gip~------~~~~l~~----~g~-~l~d---------~----~tL~~y~I~  235 (252)
                      .+..+++.|-..|||..+|++|-+.  .|.|.      +.+.|.+    .|+ .|.|         +    +||+.|+|.
T Consensus        15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~   94 (127)
T 3h6n_A           15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP   94 (127)
T ss_dssp             CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred             CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence            3556888899999999999999765  47765      4566766    223 2444         2    599999999


Q ss_pred             CCCEEEEec
Q 045158          236 YGDILYVFK  244 (252)
Q Consensus       236 ~gsti~l~~  244 (252)
                      +|+++-|++
T Consensus        95 dgatv~l~~  103 (127)
T 3h6n_A           95 EGASLAMSL  103 (127)
T ss_dssp             TTCEEEEEE
T ss_pred             CCCEEEEEE
Confidence            999999874

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=95.33  E-value=0.11  Score=42.57  Aligned_cols=62  Identities=10%  Similarity=0.179  Sum_probs=52.1

Q ss_pred             EEEEeeCCCccHHHHHHHHHHHhCCCCc-cEEEEE-C----ceecccccccccccCCCCCCEEEEEee
Q 045158           95 KFNIDVDRTDTVRSLKEKIHIIDGTPIK-RMLLFF-S----GIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        95 ~~~l~v~~~~TV~~lK~~I~~~~gip~~-~q~L~~-~----g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      .+++.++..+||.+|+..+.+.+++|.+ ..||.. .    ...|.+++.+|.++++.++..|.+.++
T Consensus       153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r  220 (231)
T 3jyu_A          153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQ  220 (231)
T ss_dssp             EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEEC
T ss_pred             eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEe
Confidence            3667789999999999999999999997 588875 2    236654568999999999999999983

>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*

Probab=95.25  E-value=0.1  Score=37.91  Aligned_cols=63  Identities=19%  Similarity=0.396  Sum_probs=47.1

Q ss_pred             CceEEEEecCCCcHHHHHHHHhhc--CCCCCC------ceEEee-cC---e-eecC---------C----ccccccCCCC
Q 045158          183 GASIPLEMQDSSTVNELRHLLLSS--KILPRE------DYIFIH-KQ---R-IMRD---------N----CSLRWHGVEY  236 (252)
Q Consensus       183 g~~~~l~v~~~~tV~~Lk~~i~~~--~gip~~------~~~l~~-~g---~-~l~d---------~----~tL~~y~I~~  236 (252)
                      ...+++.|-..|||..+|++|-+.  .|.|.+      .+.|.+ .|   + .|.|         +    +||+.|+|.+
T Consensus        26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d  105 (117)
T 4e74_A           26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD  105 (117)
T ss_dssp             CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred             CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence            456788899999999999999765  477754      456665 22   2 3444         2    5999999999


Q ss_pred             CCEEEEecC
Q 045158          237 GDILYVFKG  245 (252)
Q Consensus       237 gsti~l~~~  245 (252)
                      |+++-|++.
T Consensus       106 gatl~l~~~  114 (117)
T 4e74_A          106 GSVVALVSK  114 (117)
T ss_dssp             TCEEEEEEC
T ss_pred             CCEEEEEeC
Confidence            999999864

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=95.11  E-value=0.06  Score=39.87  Aligned_cols=70  Identities=16%  Similarity=0.233  Sum_probs=55.9

Q ss_pred             CCcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHh-CCCCccEEEE--ECceecccccccccccCCCCCCEE
Q 045158           82 HDKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIID-GTPIKRMLLF--FSGIELDDEFRNLSEYGIREFSEI  151 (252)
Q Consensus        82 ~~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~-gip~~~q~L~--~~g~~L~~d~~~L~~y~i~~~s~i  151 (252)
                      .....|-|++ +|..+.-.+..++||.+|.+-|.... +.+.....|+  |-.+.+.+++.+|.+.|+.+.+++
T Consensus        50 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl  123 (127)
T 1s3s_G           50 EPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV  123 (127)
T ss_dssp             SCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence            3457899996 68888999999999999999999863 4555667776  567888756799999999985544

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=95.10  E-value=0.093  Score=37.68  Aligned_cols=73  Identities=14%  Similarity=0.112  Sum_probs=58.7

Q ss_pred             CCcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEE--ECceecc-cccccccccCCCCCCEEEEEe
Q 045158           82 HDKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF--FSGIELD-DEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        82 ~~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~--~~g~~L~-~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      .....|-|++ +|+.+.-.+..++||.+|..-|... +.......|+  |-.+.|. +.+.+|.+.|+.+.++|.+..
T Consensus        21 ~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~   97 (109)
T 2cr5_A           21 EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE   97 (109)
T ss_dssp             SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence            3467899996 6888888899999999999999965 5555667776  5677775 467899999999999998765

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=94.96  E-value=0.25  Score=36.27  Aligned_cols=63  Identities=25%  Similarity=0.242  Sum_probs=47.5

Q ss_pred             CcEEEEeeCCCccHHHHHHHHHHHh--CCCC------ccEEEEE----Cce-eccccc------------ccccccCCCC
Q 045158           93 SRKFNIDVDRTDTVRSLKEKIHIID--GTPI------KRMLLFF----SGI-ELDDEF------------RNLSEYGIRE  147 (252)
Q Consensus        93 g~~~~l~v~~~~TV~~lK~~I~~~~--gip~------~~q~L~~----~g~-~L~~d~------------~~L~~y~i~~  147 (252)
                      +..+++.|-.-|||.++|++|-+..  ++|.      +...|-|    .|. .|.|.+            +||+.|+|.+
T Consensus        16 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~d   95 (127)
T 3h6n_A           16 MDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIPE   95 (127)
T ss_dssp             CCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCCT
T ss_pred             CCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCCC
Confidence            4558888888999999999998765  6654      5667777    233 354211            5999999999


Q ss_pred             CCEEEEEe
Q 045158          148 FSEIIVFL  155 (252)
Q Consensus       148 ~s~i~l~~  155 (252)
                      |+++.|..
T Consensus        96 gatv~l~~  103 (127)
T 3h6n_A           96 GASLAMSL  103 (127)
T ss_dssp             TCEEEEEE
T ss_pred             CCEEEEEE
Confidence            99999875

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=94.93  E-value=0.099  Score=38.49  Aligned_cols=64  Identities=14%  Similarity=0.235  Sum_probs=52.6

Q ss_pred             ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEe--ecCeee--c-CCccccccCCCCCCEEEEec
Q 045158          180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFI--HKQRIM--R-DNCSLRWHGVEYGDILYVFK  244 (252)
Q Consensus       180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~--~~g~~l--~-d~~tL~~y~I~~gsti~l~~  244 (252)
                      ...|.++.-.-..++||.+|+.-|... +.+...+.|.  |-.+.+  + .+.||.+.|+.+..+|++-.
T Consensus        50 lPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~  118 (124)
T 1wj4_A           50 YPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE  118 (124)
T ss_dssp             CTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence            467888888888999999999999876 7777778776  567888  3 47899999999988888754

>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}

Probab=94.60  E-value=0.14  Score=34.59  Aligned_cols=59  Identities=15%  Similarity=0.299  Sum_probs=51.1

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEE
Q 045158           11 EFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLT   70 (252)
Q Consensus        11 ~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~   70 (252)
                      .+.-.++-.+++..||+.++.+.|++-+.-.+...+..|+++.+|.+.+++-++. +.+.
T Consensus         4 vi~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGl-VQin   62 (89)
T 2juo_A            4 CVSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGT-VQLS   62 (89)
T ss_dssp             EEEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSE-EEEE
T ss_pred             hhhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccE-EEEE
Confidence            3455677889999999999999999999999999999999999999999997776 5543

>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.43  E-value=0.084  Score=35.83  Aligned_cols=59  Identities=15%  Similarity=0.182  Sum_probs=50.4

Q ss_pred             CCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeec---CeeecCCccccccCCCCCCEEEEe
Q 045158          182 NGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHK---QRIMRDNCSLRWHGVEYGDILYVF  243 (252)
Q Consensus       182 ~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~---g~~l~d~~tL~~y~I~~gsti~l~  243 (252)
                      ..+..-+.|.+..+..+|--.|+++..+.++.+.|...   +..|+=+.+|.||||++   +|..
T Consensus        19 ~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~   80 (91)
T 2daj_A           19 KTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAM   80 (91)
T ss_dssp             TTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEE
T ss_pred             CcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh---hhee
Confidence            35566689999999999999999999999999988763   47888999999999987   5554

>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=94.42  E-value=0.23  Score=36.36  Aligned_cols=61  Identities=15%  Similarity=0.273  Sum_probs=44.7

Q ss_pred             ceEEEEecCCCcHHHHHHHHhhc----CCCCCC----ceEEeec-C---ee----------ecCC----ccccccCCCCC
Q 045158          184 ASIPLEMQDSSTVNELRHLLLSS----KILPRE----DYIFIHK-Q---RI----------MRDN----CSLRWHGVEYG  237 (252)
Q Consensus       184 ~~~~l~v~~~~tV~~Lk~~i~~~----~gip~~----~~~l~~~-g---~~----------l~d~----~tL~~y~I~~g  237 (252)
                      ..+++.|-..|||..+|++|-+.    .|.|.+    .+-|.++ |   +.          ++++    +||+.|+|.+|
T Consensus        39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg  118 (126)
T 3kuz_A           39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG  118 (126)
T ss_dssp             CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred             CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence            56788899999999999999664    377754    3455541 1   12          2332    58999999999


Q ss_pred             CEEEEec
Q 045158          238 DILYVFK  244 (252)
Q Consensus       238 sti~l~~  244 (252)
                      +++-+++
T Consensus       119 atlal~k  125 (126)
T 3kuz_A          119 STIKVFK  125 (126)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEee
Confidence            9999875

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=94.38  E-value=0.25  Score=36.79  Aligned_cols=62  Identities=19%  Similarity=0.268  Sum_probs=47.3

Q ss_pred             cEEEEeeCCCccHHHHHHHHHHHh--CCCC------ccEEEEE----Cce-eccccc-------------ccccccCCCC
Q 045158           94 RKFNIDVDRTDTVRSLKEKIHIID--GTPI------KRMLLFF----SGI-ELDDEF-------------RNLSEYGIRE  147 (252)
Q Consensus        94 ~~~~l~v~~~~TV~~lK~~I~~~~--gip~------~~q~L~~----~g~-~L~~d~-------------~~L~~y~i~~  147 (252)
                      ..+++.|-.-|||.++|++|-+..  |+|.      +..-|-|    .|+ .|. |.             .||+.|+|.+
T Consensus        41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~-D~D~tS~~~~~wkrLNTL~HY~V~D  119 (138)
T 2r2o_A           41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILS-DEDVTSEVQGLWRRLNTLQHYKVPD  119 (138)
T ss_dssp             CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEEC-SSSTTCCEETTEEECCBHHHHTCCT
T ss_pred             CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEee-ccCCcccccCCceeecchhccCCCC
Confidence            458888989999999999998865  6764      3455666    333 364 32             4999999999


Q ss_pred             CCEEEEEee
Q 045158          148 FSEIIVFLK  156 (252)
Q Consensus       148 ~s~i~l~~~  156 (252)
                      |+++.|+-+
T Consensus       120 ga~l~l~~~  128 (138)
T 2r2o_A          120 GATVALVPC  128 (138)
T ss_dssp             TCEEEEEEC
T ss_pred             CCEEEEEEC
Confidence            999998764

>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.29  E-value=0.1  Score=35.42  Aligned_cols=60  Identities=15%  Similarity=0.104  Sum_probs=51.6

Q ss_pred             EEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEE---cCeecCCCCCccccccc
Q 045158            2 RIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAV---SGWELVDGLDMEDYPIV   61 (252)
Q Consensus         2 ~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~---~g~~L~d~~~L~~~~i~   61 (252)
                      ++.|.+ ..+...+.|+|..++.++--.|+++..+.|+.-.|.-   .+.+|+-+++|.+|||.
T Consensus        12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgir   75 (91)
T 2daj_A           12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLR   75 (91)
T ss_dssp             EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCS
T ss_pred             EEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhh
Confidence            455666 5566678999999999999999999999999888874   46789999999999998

>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}

Probab=94.29  E-value=0.092  Score=35.51  Aligned_cols=56  Identities=13%  Similarity=0.089  Sum_probs=48.9

Q ss_pred             EEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEE
Q 045158          187 PLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYV  242 (252)
Q Consensus       187 ~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l  242 (252)
                      .-.++-..+...||..++.+.|++.+.+-|...+..|+++.+|-+.+|+-.-.+.+
T Consensus         6 ~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQi   61 (89)
T 2juo_A            6 SQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQL   61 (89)
T ss_dssp             EEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEE
T ss_pred             hhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEE
Confidence            34466778899999999999999999999988888899999999999987776665

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=94.18  E-value=0.11  Score=35.34  Aligned_cols=45  Identities=7%  Similarity=0.115  Sum_probs=39.2

Q ss_pred             EEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCe
Q 045158            2 RIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGW   47 (252)
Q Consensus         2 ~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~   47 (252)
                      +|.|.+. -++.|.|.++.+..+|..+|.++..+|++.-.|.|...
T Consensus         7 ~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~   51 (83)
T 1oey_A            7 TLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR   51 (83)
T ss_dssp             EEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred             EEEEEEE-EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence            4555556 78999999999999999999999999998889988754

>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A

Probab=94.15  E-value=0.079  Score=35.66  Aligned_cols=62  Identities=21%  Similarity=0.251  Sum_probs=46.5

Q ss_pred             cCCceEEEEec--CCCcHHHHHHHHhhcCCCC-CCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158          181 LNGASIPLEMQ--DSSTVNELRHLLLSSKILP-REDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG  251 (252)
Q Consensus       181 ~~g~~~~l~v~--~~~tV~~Lk~~i~~~~gip-~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~  251 (252)
                      ++|+...  +.  ...||.+|-+.+    |++ +....+..+|..+. .....++-+++||.|.++  +..+||
T Consensus         5 vNGe~~e--~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVp-r~~~~~~~L~dGD~IEIv--~~VgGG   69 (78)
T 2k5p_A            5 VNGKPST--VDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLE-REAFDATTVKDGDAVEFL--YFMGGG   69 (78)
T ss_dssp             ETTEEEE--CSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECC-TTHHHHCEECSSBCEEEC--CCCCCS
T ss_pred             ECCEEEE--cCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECC-hHHcCcccCCCCCEEEEE--eeecCC
Confidence            3576554  44  567999998877    677 77778888987654 456677889999999998  666666

>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E

Probab=93.94  E-value=0.17  Score=32.42  Aligned_cols=61  Identities=20%  Similarity=0.313  Sum_probs=43.6

Q ss_pred             cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158          181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG  251 (252)
Q Consensus       181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~  251 (252)
                      .+|+.+.+   ...||.+|.+.+    +++.....+..+|+.... ....++-+++||.|.+++  ..+||
T Consensus         4 vNg~~~~~---~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~-~~~~~~~L~dgD~v~i~~--~V~GG   64 (64)
T 2cu3_A            4 LNGEPRPL---EGKTLKEVLEEM----GVELKGVAVLLNEEAFLG-LEVPDRPLRDGDVVEVVA--LMQGG   64 (64)
T ss_dssp             ETTEEECC---TTCCHHHHHHHH----TBCGGGEEEEETTEEEEG-GGCCCCCCCTTCEEEEEE--CCCC-
T ss_pred             ECCEEEEc---CCCcHHHHHHHc----CCCCCcEEEEECCEECCc-cccCCcCCCCCCEEEEEe--ecccC
Confidence            45776655   457999999988    566777777788866543 345567899999999984  44444

>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2

Probab=93.53  E-value=0.94  Score=29.41  Aligned_cols=62  Identities=11%  Similarity=0.102  Sum_probs=46.7

Q ss_pred             cEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           84 KIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        84 ~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      .|+|.|+-......+++....||.+|.+.+    ++++....+..||.... .+.     -+++|+.|.++-
T Consensus         4 ~m~i~vNg~~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~-~~~-----~L~~gD~V~ii~   65 (70)
T 1ryj_A            4 GMKFTVITDDGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVI-DEE-----EIFDGDIIEVIR   65 (70)
T ss_dssp             CEEEEEEETTEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECC-TTS-----BCCTTCEEEEEE
T ss_pred             eEEEEEeCccCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECC-Ccc-----cCCCCCEEEEEe
Confidence            488888855445566777778999998875    67777777888999885 322     688999998864

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=93.51  E-value=0.24  Score=33.63  Aligned_cols=46  Identities=2%  Similarity=0.035  Sum_probs=40.5

Q ss_pred             cEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECc
Q 045158           84 KIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSG  130 (252)
Q Consensus        84 ~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g  130 (252)
                      .+.|.|++. -++.+.|.+..+..+|..+|.++.++|++.-.|.|..
T Consensus         5 ~~~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~   50 (83)
T 1oey_A            5 AYTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP   50 (83)
T ss_dssp             CEEEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred             cEEEEEEEE-EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence            366777766 7899999999999999999999999999998899865

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=93.26  E-value=0.56  Score=38.20  Aligned_cols=61  Identities=15%  Similarity=0.192  Sum_probs=49.0

Q ss_pred             EEEEEecCCCcHHHHHHHHHHHhCCCCC-ceEEEE-c----CeecCCC-CCccccccccCCcEEEEEec
Q 045158           11 EFVLEVGLQEPVLEIKRKIEQIFNIPAT-SQTLAV-S----GWELVDG-LDMEDYPIVKEGTKIDLTIN   72 (252)
Q Consensus        11 ~~~l~v~~~~tV~~lK~~I~~~~~i~~~-~q~L~~-~----g~~L~d~-~~L~~~~i~~~~t~i~l~~~   72 (252)
                      .+++.++..+||.+|+.++.+.++++++ .-||.. .    ...|.|. .+|.++++..+.. |.+-++
T Consensus       153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~-illE~r  220 (231)
T 3jyu_A          153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQV-LVIEPQ  220 (231)
T ss_dssp             EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEE-EEEEEC
T ss_pred             eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCE-EEEEEe
Confidence            3567789999999999999999999997 588874 3    3467765 6999999996655 777666

>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*

Probab=93.17  E-value=0.37  Score=34.92  Aligned_cols=63  Identities=27%  Similarity=0.334  Sum_probs=46.3

Q ss_pred             cEEEEeeCCCccHHHHHHHHHHHh--CCCCc------cEEEEE-Cc---e-ecccc-c-----------ccccccCCCCC
Q 045158           94 RKFNIDVDRTDTVRSLKEKIHIID--GTPIK------RMLLFF-SG---I-ELDDE-F-----------RNLSEYGIREF  148 (252)
Q Consensus        94 ~~~~l~v~~~~TV~~lK~~I~~~~--gip~~------~q~L~~-~g---~-~L~~d-~-----------~~L~~y~i~~~  148 (252)
                      ..+++.|-.-|||..+|++|-+..  |.|.+      ...|-| .|   . .|.|. .           +||+.|+|.+|
T Consensus        27 ~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg  106 (117)
T 4e74_A           27 PEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDG  106 (117)
T ss_dssp             CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTT
T ss_pred             CceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCC
Confidence            347788888999999999998764  66644      556776 23   2 35421 1           58999999999


Q ss_pred             CEEEEEee
Q 045158          149 SEIIVFLK  156 (252)
Q Consensus       149 s~i~l~~~  156 (252)
                      +++.|+-+
T Consensus       107 atl~l~~~  114 (117)
T 4e74_A          107 SVVALVSK  114 (117)
T ss_dssp             CEEEEEEC
T ss_pred             CEEEEEeC
Confidence            99998753

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=93.02  E-value=0.37  Score=34.43  Aligned_cols=63  Identities=17%  Similarity=0.152  Sum_probs=49.8

Q ss_pred             ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEe--ecCeeec--CCccccccCCCCCCEEEEe
Q 045158          180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFI--HKQRIMR--DNCSLRWHGVEYGDILYVF  243 (252)
Q Consensus       180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~--~~g~~l~--d~~tL~~y~I~~gsti~l~  243 (252)
                      ..+|+++.-.-..++||.+|...|... +.....+.|.  |-.+.+.  .+.||.+.|+.+..+|++-
T Consensus        30 lpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve   96 (109)
T 2cr5_A           30 CPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVE   96 (109)
T ss_dssp             CTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEE
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEE
Confidence            567888887788899999999999865 4455567665  4566775  4689999999999999875

>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}

Probab=92.67  E-value=0.77  Score=30.11  Aligned_cols=57  Identities=14%  Similarity=0.228  Sum_probs=38.4

Q ss_pred             EEEecCCCcHHHHHHHHhhcCCCCC--CceEEeecCeeecCCccccccCCCCCCEEEEecCeecC
Q 045158          187 PLEMQDSSTVNELRHLLLSSKILPR--EDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSR  249 (252)
Q Consensus       187 ~l~v~~~~tV~~Lk~~i~~~~gip~--~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~  249 (252)
                      .+++ ...||.+|.+.+..+.++..  ....+.-||+...+    .++-+++||+|.+++ .++|
T Consensus        15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~P-pvsG   73 (74)
T 3rpf_C           15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLP-PVCG   73 (74)
T ss_dssp             CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEEC-CBCC
T ss_pred             EEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEEC-CCCC
Confidence            3556 45799999999987654432  34555567755332    466799999999874 3443

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=92.60  E-value=0.28  Score=39.63  Aligned_cols=57  Identities=11%  Similarity=0.272  Sum_probs=46.0

Q ss_pred             EEEEecCCCcHHHHHHHHhhcCCCCCC-ceEEee---cC--eeecC-CccccccCCCCCCEEEE
Q 045158          186 IPLEMQDSSTVNELRHLLLSSKILPRE-DYIFIH---KQ--RIMRD-NCSLRWHGVEYGDILYV  242 (252)
Q Consensus       186 ~~l~v~~~~tV~~Lk~~i~~~~gip~~-~~~l~~---~g--~~l~d-~~tL~~y~I~~gsti~l  242 (252)
                      .+..+...+|+.+|++.+++..++|.+ +.||-.   .+  ..|+| +.||.++++.++..|.|
T Consensus       142 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~ill  205 (217)
T 4a3p_A          142 VTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVI  205 (217)
T ss_dssp             EEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEE
T ss_pred             eEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEE
Confidence            346678899999999999999999997 566653   22  56666 57999999999999876

>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1

Probab=92.19  E-value=0.87  Score=31.64  Aligned_cols=74  Identities=18%  Similarity=0.183  Sum_probs=47.0

Q ss_pred             ceeeEEeeee--c-cCCceEEEEecCCCcHHHHHHHHhhcC-CC----------CCCceEEeecCeeecCCccccccCCC
Q 045158          170 LSFKVQTSSS--L-LNGASIPLEMQDSSTVNELRHLLLSSK-IL----------PREDYIFIHKQRIMRDNCSLRWHGVE  235 (252)
Q Consensus       170 ~~i~v~~~~~--~-~~g~~~~l~v~~~~tV~~Lk~~i~~~~-gi----------p~~~~~l~~~g~~l~d~~tL~~y~I~  235 (252)
                      |.|.|+.|..  . .+.....+++....||.+|.+.+.... ++          ......+.-||+...     .++-++
T Consensus        10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~-----~~~~L~   84 (98)
T 1vjk_A           10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVS-----WDEELK   84 (98)
T ss_dssp             EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCC-----TTCBCC
T ss_pred             EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECC-----CCCCCC
Confidence            5666655542  1 123466788877789999999997764 11          123345666775554     267899


Q ss_pred             CCCEEEEecCeecC
Q 045158          236 YGDILYVFKGTVSR  249 (252)
Q Consensus       236 ~gsti~l~~~~~~~  249 (252)
                      +||+|.+++ .++|
T Consensus        85 dGDeV~i~p-pv~G   97 (98)
T 1vjk_A           85 DGDVVGVFP-PVSG   97 (98)
T ss_dssp             TTCEEEEES-CC--
T ss_pred             CCCEEEEEC-CCCC
Confidence            999999985 3444

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=92.03  E-value=0.43  Score=35.14  Aligned_cols=63  Identities=21%  Similarity=0.242  Sum_probs=50.1

Q ss_pred             EEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHh-CCCCCceEEE--EcCeecCCC-CCccccccccCCc
Q 045158            2 RIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIF-NIPATSQTLA--VSGWELVDG-LDMEDYPIVKEGT   65 (252)
Q Consensus         2 ~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~-~i~~~~q~L~--~~g~~L~d~-~~L~~~~i~~~~t   65 (252)
                      +|.|++ +|..+.-..+.++||.+|...|.... +.+.....|+  |-.+.|+|. .||.+.|+.+ +.
T Consensus        54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~p-sa  121 (127)
T 1s3s_G           54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLN-AV  121 (127)
T ss_dssp             CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSS-CE
T ss_pred             EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcC-ce
Confidence            466777 89999999999999999999999864 3555667777  557888764 6999999984 44

>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=91.86  E-value=1  Score=32.94  Aligned_cols=61  Identities=33%  Similarity=0.413  Sum_probs=43.0

Q ss_pred             cEEEEeeCCCccHHHHHHHHHHH----hCCCCc----cEEEEE----Cceeccc---------cc----ccccccCCCCC
Q 045158           94 RKFNIDVDRTDTVRSLKEKIHII----DGTPIK----RMLLFF----SGIELDD---------EF----RNLSEYGIREF  148 (252)
Q Consensus        94 ~~~~l~v~~~~TV~~lK~~I~~~----~gip~~----~q~L~~----~g~~L~~---------d~----~~L~~y~i~~~  148 (252)
                      ..+++.|-.-|||.++|++|-+.    .|.|.+    ...|-|    .+..|.|         +.    .||+.|+|.+|
T Consensus        39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg  118 (126)
T 3kuz_A           39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG  118 (126)
T ss_dssp             CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred             CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence            45788888899999999999764    377643    455655    1223331         11    47899999999


Q ss_pred             CEEEEE
Q 045158          149 SEIIVF  154 (252)
Q Consensus       149 s~i~l~  154 (252)
                      +++.|+
T Consensus       119 atlal~  124 (126)
T 3kuz_A          119 STIKVF  124 (126)
T ss_dssp             CEEEEE
T ss_pred             CEEEEe
Confidence            999875

>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2

Probab=91.86  E-value=0.33  Score=31.21  Aligned_cols=62  Identities=26%  Similarity=0.313  Sum_probs=43.6

Q ss_pred             cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158          181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG  251 (252)
Q Consensus       181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~  251 (252)
                      .+|+.+.  +....||.+|.+.+    +++.....+..+|+.... ....++-+++||.|.+++  ..+||
T Consensus         5 vNg~~~~--~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~-~~~~~~~L~~gD~v~i~~--~V~GG   66 (66)
T 1f0z_A            5 FNDQAMQ--CAAGQTVHELLEQL----DQRQAGAALAINQQIVPR-EQWAQHIVQDGDQILLFQ--VIAGG   66 (66)
T ss_dssp             ESSCEEC--CCTTCCHHHHHHHH----TCCCSSEEEEETTEEECH-HHHTTCCCCTTEEECEEE--SCCCC
T ss_pred             ECCEEEE--cCCCCcHHHHHHHc----CCCCCCEEEEECCEECCc-hhcCCcCCCCCCEEEEEe--ecccC
Confidence            3576554  45667999999988    566777777788866542 334467799999999984  44444

>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}

Probab=91.22  E-value=0.59  Score=30.91  Aligned_cols=59  Identities=12%  Similarity=0.205  Sum_probs=43.8

Q ss_pred             EEEEEEeCC-cEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEE
Q 045158           85 IHIIIKFPS-RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVF  154 (252)
Q Consensus        85 ~~i~v~~~g-~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~  154 (252)
                      |+|.|++.| ....+++....||++|-+    ..|+|+..-....||+....|.       +.+|+.|.++
T Consensus         1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~-------~l~GD~VeIv   60 (74)
T 2l32_A            1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ-------SVEVDRVKVL   60 (74)
T ss_dssp             CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS-------SSCCCCEEEC
T ss_pred             CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH-------CCCCCEEEEE
Confidence            678888534 446688999999998764    4899999887778998885332       3458888775

>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}

Probab=90.74  E-value=0.29  Score=36.31  Aligned_cols=35  Identities=17%  Similarity=0.169  Sum_probs=31.4

Q ss_pred             EEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcC
Q 045158           12 FVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSG   46 (252)
Q Consensus        12 ~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g   46 (252)
                      .++.|..++|+.+||..|++.+|+|+++|||...-
T Consensus        58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~   92 (130)
T 2kvr_A           58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQ   92 (130)
T ss_dssp             EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECC
T ss_pred             ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEee
Confidence            35788899999999999999999999999998653

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=90.71  E-value=0.89  Score=31.25  Aligned_cols=47  Identities=6%  Similarity=0.040  Sum_probs=38.5

Q ss_pred             CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCc-eEEEEcCe
Q 045158            1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATS-QTLAVSGW   47 (252)
Q Consensus         1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~-q~L~~~g~   47 (252)
                      |+|.+.+.|....+.++++.+..+|..++.+.++++..+ ..+.|...
T Consensus         7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE   54 (89)
T 1vd2_A            7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE   54 (89)
T ss_dssp             EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred             EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence            345556689999999999999999999999999998655 56667654

>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2

Probab=89.98  E-value=1.1  Score=30.60  Aligned_cols=63  Identities=8%  Similarity=0.052  Sum_probs=43.7

Q ss_pred             CcEEEEEEeCCcEEEEeeCCC-ccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           83 DKIHIIIKFPSRKFNIDVDRT-DTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        83 ~~~~i~v~~~g~~~~l~v~~~-~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      ..|.|.|+  |+.+  ++... .||.+|.+.+    ++++....+..||..+.  .....+.-+++|+.|.++-
T Consensus        19 ~~M~I~vN--Ge~~--el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~--~~~~~~~~L~dGD~Vei~~   82 (87)
T 1tyg_B           19 GRHMLQLN--GKDV--KWKKDTGTIQDLLASY----QLENKIVIVERNKEIIG--KERYHEVELCDRDVIEIVH   82 (87)
T ss_dssp             ---CEEET--TEEE--CCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEEC--GGGTTTSBCCSSSEEEEEE
T ss_pred             cceEEEEC--CEEE--ECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECC--hhhcCCcCCCCCCEEEEEc
Confidence            34555554  6644  45565 7999998875    67777777888999884  3456677899999998874

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=89.71  E-value=2.2  Score=29.23  Aligned_cols=49  Identities=2%  Similarity=0.040  Sum_probs=40.4

Q ss_pred             CcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCcc-EEEEECce
Q 045158           83 DKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKR-MLLFFSGI  131 (252)
Q Consensus        83 ~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~-q~L~~~g~  131 (252)
                      +.|.|.+.+.|..+.+.++++.+..+|.+++++..+++..+ ..+.|...
T Consensus         5 ~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE   54 (89)
T 1vd2_A            5 SQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE   54 (89)
T ss_dssp             SCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred             CeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence            34666666788999999999999999999999999987654 67778654

>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D

Probab=89.69  E-value=1.2  Score=29.55  Aligned_cols=59  Identities=22%  Similarity=0.263  Sum_probs=39.7

Q ss_pred             eEEEEecCCCcHHHHHHHHhhcCC-----CCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCC
Q 045158          185 SIPLEMQDSSTVNELRHLLLSSKI-----LPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRG  250 (252)
Q Consensus       185 ~~~l~v~~~~tV~~Lk~~i~~~~g-----ip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~  250 (252)
                      ...++ ....||.+|.+.+.....     ++.....+..+|+...     .++-+++||+|.+++ .++||
T Consensus        18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~-----~~~~l~~gD~V~i~P-pv~GG   81 (81)
T 1fm0_D           18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVS-----FDHPLTDGDEVAFFP-PVTGG   81 (81)
T ss_dssp             EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECC-----TTCBCCTTCEEEEEC-CCCCC
T ss_pred             eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECC-----CCCCCCCCCEEEEeC-CCCCC
Confidence            44454 456799999999986642     3333456777886654     366889999999985 34443

>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A

Probab=89.38  E-value=0.19  Score=33.55  Aligned_cols=48  Identities=17%  Similarity=0.275  Sum_probs=36.6

Q ss_pred             EEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEec
Q 045158          188 LEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFK  244 (252)
Q Consensus       188 l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~  244 (252)
                      +++....||.+|.+.+    ++|.+...+..+|+....+     +-+++||+|.+++
T Consensus        25 ~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~p   72 (77)
T 1rws_A           25 IEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIP   72 (77)
T ss_dssp             CCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSC
T ss_pred             EECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEc
Confidence            3455667999998876    4677767777888777654     6899999999873

>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}

Probab=89.24  E-value=0.46  Score=35.19  Aligned_cols=33  Identities=12%  Similarity=0.189  Sum_probs=30.1

Q ss_pred             EEEeeCCCccHHHHHHHHHHHhCCCCccEEEEE
Q 045158           96 FNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFF  128 (252)
Q Consensus        96 ~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~  128 (252)
                      .++.|..++|+.+|+..|++..|+|+++|+|..
T Consensus        58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~   90 (130)
T 2kvr_A           58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP   90 (130)
T ss_dssp             EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred             ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence            457889999999999999999999999999874

>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1

Probab=89.00  E-value=4.2  Score=28.04  Aligned_cols=68  Identities=16%  Similarity=0.227  Sum_probs=46.3

Q ss_pred             cCCcEEEEEEe-C------C-cEEEEeeCCCccHHHHHHHHHHHhC-C----------CCccEEEEECceeccccccccc
Q 045158           81 QHDKIHIIIKF-P------S-RKFNIDVDRTDTVRSLKEKIHIIDG-T----------PIKRMLLFFSGIELDDEFRNLS  141 (252)
Q Consensus        81 ~~~~~~i~v~~-~------g-~~~~l~v~~~~TV~~lK~~I~~~~g-i----------p~~~q~L~~~g~~L~~d~~~L~  141 (252)
                      .++.|.|.|++ .      | ....+++....||.+|.+.+..... +          ......+..||+... .     
T Consensus         6 ~~~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~-~-----   79 (98)
T 1vjk_A            6 HHGSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVS-W-----   79 (98)
T ss_dssp             ---CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCC-T-----
T ss_pred             ccCcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECC-C-----
Confidence            35678999994 2      3 4577888778899999999987641 1          113345667877663 2     


Q ss_pred             ccCCCCCCEEEEE
Q 045158          142 EYGIREFSEIIVF  154 (252)
Q Consensus       142 ~y~i~~~s~i~l~  154 (252)
                      ++-+++|+.|.++
T Consensus        80 ~~~L~dGDeV~i~   92 (98)
T 1vjk_A           80 DEELKDGDVVGVF   92 (98)
T ss_dssp             TCBCCTTCEEEEE
T ss_pred             CCCCCCCCEEEEE
Confidence            6678999998875

>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*

Probab=88.87  E-value=0.83  Score=30.00  Aligned_cols=55  Identities=11%  Similarity=0.136  Sum_probs=38.6

Q ss_pred             ceEEEEecCCCcHHHHHHHHhhcCCCCCCce--EEeecCeeecCCccccccCCCCCCEEEEec
Q 045158          184 ASIPLEMQDSSTVNELRHLLLSSKILPREDY--IFIHKQRIMRDNCSLRWHGVEYGDILYVFK  244 (252)
Q Consensus       184 ~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~--~l~~~g~~l~d~~tL~~y~I~~gsti~l~~  244 (252)
                      ....+++....||.+|.+.+..... .....  .+..+|+....     +.-+++||+|.+++
T Consensus        16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~-----~~~L~~gD~V~i~p   72 (77)
T 2q5w_D           16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQK-----SDFIQPNDTVALIP   72 (77)
T ss_dssp             SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECT-----TSEECTTCEEEEEC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCC-----CCCcCCCCEEEEEC
Confidence            3455666667799999999976641 01223  67778877654     36789999999985

>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A

Probab=88.68  E-value=2.8  Score=29.09  Aligned_cols=66  Identities=26%  Similarity=0.300  Sum_probs=37.4

Q ss_pred             ceEEEEec--CCCcHHHHHHHHhhcCCCCCCce-EEeecC------eeecCCc---cc--cccCCCCCCEEEEecCeecC
Q 045158          184 ASIPLEMQ--DSSTVNELRHLLLSSKILPREDY-IFIHKQ------RIMRDNC---SL--RWHGVEYGDILYVFKGTVSR  249 (252)
Q Consensus       184 ~~~~l~v~--~~~tV~~Lk~~i~~~~gip~~~~-~l~~~g------~~l~d~~---tL--~~y~I~~gsti~l~~~~~~~  249 (252)
                      +...+++.  ...||.+|.+.+.++..-..... .|.-+|      ..+=|+.   -+  .++-+++||+|-+++ .++|
T Consensus        20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~d~~L~dgDeVa~~P-pv~G   98 (99)
T 2qjl_A           20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFTS-TLHG   98 (99)
T ss_dssp             CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTGGGCBCCTTCEEEEEE-CTTC
T ss_pred             cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCCCCcCcCCCCEEEEEC-CCCC
Confidence            44556665  56799999999987762111111 011111      1222222   22  467899999998875 4555


Q ss_pred             C
Q 045158          250 G  250 (252)
Q Consensus       250 ~  250 (252)
                      |
T Consensus        99 G   99 (99)
T 2qjl_A           99 G   99 (99)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A

Probab=88.58  E-value=1.1  Score=30.44  Aligned_cols=41  Identities=17%  Similarity=0.173  Sum_probs=34.2

Q ss_pred             CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEE
Q 045158            1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLA   43 (252)
Q Consensus         1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~   43 (252)
                      |+|.|-+.+-.|.+.|+++-+..+|+.+|..+..+.  .+.++
T Consensus        13 ~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~   53 (85)
T 1ip9_A           13 TKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQ   53 (85)
T ss_dssp             EEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEE
T ss_pred             eEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEE
Confidence            466666688999999999999999999999999884  44444

>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A

Probab=88.29  E-value=2.6  Score=28.47  Aligned_cols=61  Identities=18%  Similarity=0.250  Sum_probs=42.0

Q ss_pred             ceEEEEecCCCcHHHHHHHHhhcCC-CC----------CCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCC
Q 045158          184 ASIPLEMQDSSTVNELRHLLLSSKI-LP----------REDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRG  250 (252)
Q Consensus       184 ~~~~l~v~~~~tV~~Lk~~i~~~~g-ip----------~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~  250 (252)
                      ....+++....||++|.+.+..+.. +.          .....+.-||+....     ++-+++||+|.+++ .++||
T Consensus        18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~P-pv~GG   89 (89)
T 3po0_A           18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFP-PVSGG   89 (89)
T ss_dssp             SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEEC-CCSCC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEEC-CCCCC
Confidence            5667888777899999999987652 10          112456667766543     66799999999874 44443

>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*

Probab=88.04  E-value=0.92  Score=42.01  Aligned_cols=64  Identities=17%  Similarity=0.261  Sum_probs=47.2

Q ss_pred             CceEEEEecCCCcHHHHHHHHhhc--CCCCCC------ceEEee----cCe-eecCC-------------ccccccCCCC
Q 045158          183 GASIPLEMQDSSTVNELRHLLLSS--KILPRE------DYIFIH----KQR-IMRDN-------------CSLRWHGVEY  236 (252)
Q Consensus       183 g~~~~l~v~~~~tV~~Lk~~i~~~--~gip~~------~~~l~~----~g~-~l~d~-------------~tL~~y~I~~  236 (252)
                      ...+++.|-..|||..+|++|-+.  .|.|.+      .+-|.+    .|+ .|.|.             +||++|+|.+
T Consensus       273 ~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d  352 (644)
T 3hm6_X          273 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD  352 (644)
T ss_dssp             CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred             CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCC
Confidence            356778899999999999999764  477754      456665    232 34441             5999999999


Q ss_pred             CCEEEEecCe
Q 045158          237 GDILYVFKGT  246 (252)
Q Consensus       237 gsti~l~~~~  246 (252)
                      |+++-|++..
T Consensus       353 ga~v~L~p~~  362 (644)
T 3hm6_X          353 GATVALVPCL  362 (644)
T ss_dssp             TCEEEEEEC-
T ss_pred             CcEEEEEecc
Confidence            9999998644

>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E

Probab=87.05  E-value=3.6  Score=25.92  Aligned_cols=56  Identities=11%  Similarity=0.163  Sum_probs=41.2

Q ss_pred             eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           91 FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        91 ~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      .+|+.+.  + ...||.+|.+.+    +++.....+..||....  .....+.-+++|+.|.++-
T Consensus         4 vNg~~~~--~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~--~~~~~~~~L~dgD~v~i~~   59 (64)
T 2cu3_A            4 LNGEPRP--L-EGKTLKEVLEEM----GVELKGVAVLLNEEAFL--GLEVPDRPLRDGDVVEVVA   59 (64)
T ss_dssp             ETTEEEC--C-TTCCHHHHHHHH----TBCGGGEEEEETTEEEE--GGGCCCCCCCTTCEEEEEE
T ss_pred             ECCEEEE--c-CCCcHHHHHHHc----CCCCCcEEEEECCEECC--ccccCCcCCCCCCEEEEEe
Confidence            4566554  4 567999998876    56777777888998884  3445677899999998874

>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A

Probab=86.98  E-value=3.7  Score=29.43  Aligned_cols=63  Identities=11%  Similarity=0.116  Sum_probs=36.8

Q ss_pred             eEEEEecC---CCcHHHHHHHHhhcC-CCCCCceEEeecC------eeecCCc---cc--cccCCCCCCEEEEecCeecC
Q 045158          185 SIPLEMQD---SSTVNELRHLLLSSK-ILPREDYIFIHKQ------RIMRDNC---SL--RWHGVEYGDILYVFKGTVSR  249 (252)
Q Consensus       185 ~~~l~v~~---~~tV~~Lk~~i~~~~-gip~~~~~l~~~g------~~l~d~~---tL--~~y~I~~gsti~l~~~~~~~  249 (252)
                      .+.++++.   ..||.+|-+.+.+++ ++.+  -.|.-+|      .++=+++   -|  .+|-+++||+|.+++ .+.|
T Consensus        31 ~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~--~lf~~~g~lr~~i~VlVN~~di~~l~gldt~L~dGDeV~iip-~vaG  107 (114)
T 1wgk_A           31 KHQVALPGQEEPWDIRNLLVWIKKNLLKERP--ELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFIS-TLHG  107 (114)
T ss_dssp             EEEEEECCCSSCCBHHHHHHHHTTTTCCSCH--HHHCCSSSCCSSEEEEESSSBHHHHCTTTCBCCSSEEEEEEE-CSCC
T ss_pred             EEEEEeCCCCCCCCHHHHHHHHHHHccchhH--hhCccCCcccCCeEEEECCeeeeccCCcCcCCCCCCEEEEeC-CCCC
Confidence            56677773   359999999998875 2211  0110111      1222333   22  468899999998875 3444


Q ss_pred             C
Q 045158          250 G  250 (252)
Q Consensus       250 ~  250 (252)
                      |
T Consensus       108 G  108 (114)
T 1wgk_A          108 G  108 (114)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A

Probab=86.73  E-value=5.1  Score=27.20  Aligned_cols=60  Identities=10%  Similarity=0.054  Sum_probs=37.5

Q ss_pred             CceEEEEecCCCcHHHHHHHHhhcCC-CC------------CCceEEeecCeeecCCccccccCCCCCCEEEEec
Q 045158          183 GASIPLEMQDSSTVNELRHLLLSSKI-LP------------REDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFK  244 (252)
Q Consensus       183 g~~~~l~v~~~~tV~~Lk~~i~~~~g-ip------------~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~  244 (252)
                      |....++++ ..||.+|.+.+..++. +.            .....+.-||+......- .++-+++||+|.+++
T Consensus        16 g~~~~~~~~-~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L~~gDeV~i~P   88 (93)
T 3dwg_C           16 GGQKSVSAS-GDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAIADGDSVTILP   88 (93)
T ss_dssp             TTCSEEEEC-CSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBCCTTCEEEEEE
T ss_pred             CCCeEEecC-CCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCCCCCCEEEEEC
Confidence            333346643 4799999999987751 10            113456567765543222 356799999999874

>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*

Probab=86.22  E-value=2.1  Score=39.54  Aligned_cols=64  Identities=23%  Similarity=0.366  Sum_probs=46.8

Q ss_pred             CceEEEEecCCCcHHHHHHHHhhc--CCCCC------CceEEee----cCe-eecC-------------CccccccCCCC
Q 045158          183 GASIPLEMQDSSTVNELRHLLLSS--KILPR------EDYIFIH----KQR-IMRD-------------NCSLRWHGVEY  236 (252)
Q Consensus       183 g~~~~l~v~~~~tV~~Lk~~i~~~--~gip~------~~~~l~~----~g~-~l~d-------------~~tL~~y~I~~  236 (252)
                      ...+++.|-..|||..+|++|-+.  .|.|.      +.+-|.+    .|+ .|.|             =+||++|+|.+
T Consensus       246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D  325 (627)
T 3ig3_A          246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD  325 (627)
T ss_dssp             -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred             CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence            456778899999999999999775  46664      4456665    222 3443             15899999999


Q ss_pred             CCEEEEecCe
Q 045158          237 GDILYVFKGT  246 (252)
Q Consensus       237 gsti~l~~~~  246 (252)
                      |+++-|++..
T Consensus       326 ga~v~L~p~~  335 (627)
T 3ig3_A          326 GSLVALVPKQ  335 (627)
T ss_dssp             TCEEEEEEC-
T ss_pred             CceEEEEecc
Confidence            9999998654

>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A

Probab=85.93  E-value=2.9  Score=28.10  Aligned_cols=56  Identities=13%  Similarity=0.032  Sum_probs=36.6

Q ss_pred             EEecCCCcHHHHHHHHhhcCC------C-----CCCceEEeecCeeecCCccccccCCCCCCEEEEec
Q 045158          188 LEMQDSSTVNELRHLLLSSKI------L-----PREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFK  244 (252)
Q Consensus       188 l~v~~~~tV~~Lk~~i~~~~g------i-----p~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~  244 (252)
                      ++++...||.+|.+.+..+..      +     ......+..+|+..... .-.++-+++||+|.+++
T Consensus        19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~p   85 (90)
T 2g1e_A           19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFP   85 (90)
T ss_dssp             EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEEC
T ss_pred             EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeC
Confidence            455556799999999977641      1     12345666677554322 22456799999999984

>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A

Probab=84.03  E-value=1.3  Score=29.46  Aligned_cols=59  Identities=8%  Similarity=0.078  Sum_probs=42.8

Q ss_pred             eCCcEEEEeeCCCccHHHHHHHHHHHhCCC-CccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           91 FPSRKFNIDVDRTDTVRSLKEKIHIIDGTP-IKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        91 ~~g~~~~l~v~~~~TV~~lK~~I~~~~gip-~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      ++|+.+.+......||.+|-+.    .|++ +....+..||..+.  .....++-+++|+.|.++-
T Consensus         5 vNGe~~e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVp--r~~~~~~~L~dGD~IEIv~   64 (78)
T 2k5p_A            5 VNGKPSTVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLE--REAFDATTVKDGDAVEFLY   64 (78)
T ss_dssp             ETTEEEECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECC--TTHHHHCEECSSBCEEECC
T ss_pred             ECCEEEEcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECC--hHHcCcccCCCCCEEEEEe
Confidence            3476554432156899998765    4777 77777889999984  3567778899999999874

>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}

Probab=83.53  E-value=4.8  Score=26.10  Aligned_cols=65  Identities=9%  Similarity=0.183  Sum_probs=41.0

Q ss_pred             EEEEEEeCC--cEEEEeeCCCccHHHHHHHHHHHhCCCC--ccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           85 IHIIIKFPS--RKFNIDVDRTDTVRSLKEKIHIIDGTPI--KRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        85 ~~i~v~~~g--~~~~l~v~~~~TV~~lK~~I~~~~gip~--~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      |.|.|++-+  +.-.+++ ...||.+|.+.+..+.++..  ....+..||+... +    .+.-+++|+.|.++-
T Consensus         1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~-~----~~~~l~~gDeV~i~P   69 (74)
T 3rpf_C            1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLID-N----LNTPLKDGDVISLLP   69 (74)
T ss_dssp             CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEEC-C----TTCCCCTTCEEEEEC
T ss_pred             CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcC-C----CCcCCCCCCEEEEEC
Confidence            456666311  1123455 56799999999987544332  3345667777753 2    356789999998874

>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A

Probab=82.34  E-value=11  Score=26.83  Aligned_cols=77  Identities=12%  Similarity=0.227  Sum_probs=45.9

Q ss_pred             CcEEEEEEeC-------C--cEEEEeeCC---CccHHHHHHHHHHHh-CCC---------Cc-cEEEEECceeccccccc
Q 045158           83 DKIHIIIKFP-------S--RKFNIDVDR---TDTVRSLKEKIHIID-GTP---------IK-RMLLFFSGIELDDEFRN  139 (252)
Q Consensus        83 ~~~~i~v~~~-------g--~~~~l~v~~---~~TV~~lK~~I~~~~-gip---------~~-~q~L~~~g~~L~~d~~~  139 (252)
                      .+|.|.|++.       |  +.+.++++.   ..||.+|-+.+.++. +..         .. ...++.||...+ - ..
T Consensus        10 ~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~-~-l~   87 (114)
T 1wgk_A           10 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWE-L-LG   87 (114)
T ss_dssp             CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHH-H-HC
T ss_pred             CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeee-c-cC
Confidence            4588888853       3  256677773   369999999998775 211         11 123334554211 0 01


Q ss_pred             ccccCCCCCCEEEEEeeeccccCCCC
Q 045158          140 LSEYGIREFSEIIVFLKTMNRLRDNP  165 (252)
Q Consensus       140 L~~y~i~~~s~i~l~~~~~~~~~~~~  165 (252)
                      =.+|-+++|+.|.++-    ...||+
T Consensus        88 gldt~L~dGDeV~iip----~vaGG~  109 (114)
T 1wgk_A           88 ELDYQLQDQDSILFIS----TLHGGS  109 (114)
T ss_dssp             TTTCBCCSSEEEEEEE----CSCCCC
T ss_pred             CcCcCCCCCCEEEEeC----CCCCCC
Confidence            1468899999987764    566663

>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*

Probab=81.77  E-value=8.5  Score=35.62  Aligned_cols=63  Identities=24%  Similarity=0.279  Sum_probs=46.7

Q ss_pred             cEEEEeeCCCccHHHHHHHHHHHh--CCC------CccEEEEE----Cce-eccccc------------ccccccCCCCC
Q 045158           94 RKFNIDVDRTDTVRSLKEKIHIID--GTP------IKRMLLFF----SGI-ELDDEF------------RNLSEYGIREF  148 (252)
Q Consensus        94 ~~~~l~v~~~~TV~~lK~~I~~~~--gip------~~~q~L~~----~g~-~L~~d~------------~~L~~y~i~~~  148 (252)
                      ..+++.|-.-|||..+|++|-+..  |+|      ++...|-|    .|+ .|.|.+            .||+.|+|.+|
T Consensus       247 ~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~Dg  326 (627)
T 3ig3_A          247 AQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTDG  326 (627)
T ss_dssp             CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred             CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCCC
Confidence            457888888999999999998764  665      45566776    233 344211            58999999999


Q ss_pred             CEEEEEee
Q 045158          149 SEIIVFLK  156 (252)
Q Consensus       149 s~i~l~~~  156 (252)
                      +++.|+-+
T Consensus       327 a~v~L~p~  334 (627)
T 3ig3_A          327 SLVALVPK  334 (627)
T ss_dssp             CEEEEEEC
T ss_pred             ceEEEEec
Confidence            99998764

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=81.56  E-value=5.7  Score=34.30  Aligned_cols=53  Identities=13%  Similarity=0.099  Sum_probs=42.2

Q ss_pred             CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCe--ecCCCCCcccccc
Q 045158            8 NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGW--ELVDGLDMEDYPI   60 (252)
Q Consensus         8 ~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~--~L~d~~~L~~~~i   60 (252)
                      .-....+.+.+.+|+.+++..+++.++++++.|.|+|.+.  .++.......|.-
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~  374 (396)
T 4eut_A          320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK  374 (396)
T ss_dssp             TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCC
T ss_pred             cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCC
Confidence            5666788999999999999999999999999999999873  2333344555544

>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2

Probab=80.54  E-value=5.9  Score=25.04  Aligned_cols=57  Identities=14%  Similarity=0.200  Sum_probs=41.1

Q ss_pred             eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           91 FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        91 ~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      .+|+.+  ++....||.+|.+.+    +++.....+..||.... . ....+.-+++|+.|.++-
T Consensus         5 vNg~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~-~-~~~~~~~L~~gD~v~i~~   61 (66)
T 1f0z_A            5 FNDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVP-R-EQWAQHIVQDGDQILLFQ   61 (66)
T ss_dssp             ESSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEEC-H-HHHTTCCCCTTEEECEEE
T ss_pred             ECCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECC-c-hhcCCcCCCCCCEEEEEe
Confidence            346544  456678999998876    66777777888998874 2 344567789999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	252
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	7e-13
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	1e-08
d1v86a_	95	d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous	3e-11
d1v86a_	95	d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous	2e-05
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	3e-11
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	2e-07
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	8e-11
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	1e-05
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	2e-10
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	6e-07
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	2e-10
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	3e-05
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	6e-10
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	6e-07
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	1e-09
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	2e-05
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	1e-09
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	3e-06
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	5e-05
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	1e-09
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	5e-07
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	5e-05
d1wiaa_	95	d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201	6e-09
d1wiaa_	95	d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201	1e-04
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	6e-09
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	0.004
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	8e-09
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	8e-09
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	7e-06
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	0.004
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	8e-09
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	2e-04
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	9e-09
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	5e-06
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	1e-08
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	3e-06
d1wgga_	96	d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas	1e-08
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	2e-08
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	3e-05
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	3e-08
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	4e-06
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	7e-05
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	4e-08
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	4e-04
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	5e-08
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	8e-04
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	1e-07
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	9e-05
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	1e-07
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	6e-04
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	1e-07
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	2e-07
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	1e-05
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	2e-07
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	0.002
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	3e-07
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	0.004
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	3e-07
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	4e-04
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	1e-06
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	2e-06
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	2e-06
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	8e-04
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	1e-05
d2uyzb1	77	d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human	4e-05
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	7e-05
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	0.002
d1we6a_	111	d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi	4e-04
d1se9a_	101	d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal	4e-04
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	0.002
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	0.002

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.2 bits (146), Expect = 7e-13
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 85  IHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYG 144
           ++I IK    K+ ++V    TV   KE I+  +G P+    L +SG  L D+ + +  Y 
Sbjct: 2   LNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDD-QTVESYH 60

Query: 145 IREFSEI 151
           I++   +
Sbjct: 61  IQDGHSV 67

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.6 bits (116), Expect = 1e-08
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 1  MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPI 60
          + I I +   ++ + V  +  VL+ K  I +   IP  +Q L  SG  L D   +E Y I
Sbjct: 2  LNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHI 61

Query: 61 VKEGTKIDL 69
           ++G  + L
Sbjct: 62 -QDGHSVHL 69

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.5 bits (136), Expect = 3e-11
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 83  DKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSE 142
           + + + I +   K ++ V    T   LK+KIH I G P     + + G+  +D  + L E
Sbjct: 16  ELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED--KTLRE 73

Query: 143 YGIREFSEIIVFLKTMN 159
             +   ++I+V   T++
Sbjct: 74  IKVTSGAKIMVVGSTIS 90

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.9 bits (93), Expect = 2e-05
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 1  MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPI 60
          + + I+ N  +  ++V L     E+K+KI  I  +P   Q +   G  + +   + +  +
Sbjct: 18 VDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKG-LVPEDKTLREIKV 76

Query: 61 VKEGTKIDL 69
             G KI +
Sbjct: 77 -TSGAKIMV 84

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (136), Expect = 3e-11
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 85  IHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYG 144
           I + +K P  K    V    +V+  KE I     +   +++L F+G  L D+   L ++G
Sbjct: 33  IKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQ-DTLIQHG 91

Query: 145 IREFSEIIVFLK 156
           I +   + + +K
Sbjct: 92  IHDGLTVHLVIK 103

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (108), Expect = 2e-07
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 1   MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPI 60
           +++ +     +    V     V + K  I + F        L  +G  L D   +  + I
Sbjct: 33  IKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGI 92

Query: 61  VKEGTKIDLTI 71
             +G  + L I
Sbjct: 93  -HDGLTVHLVI 102

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (132), Expect = 8e-11
 Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 85  IHIIIKFPSRKFNIDV-----DRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRN 139
           + + +   + K ++ V          V+ L + +  + G P     L F G  L +    
Sbjct: 2   LTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETP 61

Query: 140 LSEYGIREFSEIIVFLK 156
           LS  GI++   +++  K
Sbjct: 62  LSALGIQDGCRVMLIGK 78

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (94), Expect = 1e-05
 Identities = 13/75 (17%), Positives = 32/75 (42%), Gaps = 7/75 (9%)

Query: 1  MRIIIVANGHEFVLEVGLQEP-----VLEIKRKIEQIFNIPATSQTLAVSGWEL-VDGLD 54
          + + +  +  +  L V  Q+      V ++ + +E++  +P + Q L   G  L      
Sbjct: 2  LTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETP 61

Query: 55 MEDYPIVKEGTKIDL 69
          +    I ++G ++ L
Sbjct: 62 LSALGI-QDGCRVML 75

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.8 bits (129), Expect = 2e-10
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 84  KIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEY 143
            I + +K P       +     VR  K++I         R++L F+G  L D+   LS+ 
Sbjct: 10  IIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQ-DILSQR 68

Query: 144 GIREFSEIIVFLKT 157
           GI + S + V +++
Sbjct: 69  GILDGSTVHVVVRS 82

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.2 bits (104), Expect = 6e-07
 Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 1  MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPI 60
          +R+ +          +     V   K++I +  +  A    L  +G  L D   +    I
Sbjct: 11 IRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGI 70

Query: 61 VKEGTKIDLTI 71
            +G+ + + +
Sbjct: 71 -LDGSTVHVVV 80

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (129), Expect = 2e-10
 Identities = 15/87 (17%), Positives = 37/87 (42%), Gaps = 8/87 (9%)

Query: 85  IHIIIKFPSRK---FNIDVDRTDTVRSLKEKIHIIDGT--PIKRMLLFFSGIELDDEFRN 139
           + +++K P+++     +  DR  +V  LK  +  +       +   L +SG  L D  + 
Sbjct: 8   VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDH-QC 66

Query: 140 LSEYGIREFSEIIVFLKTMNRLRDNPP 166
           L +   ++    ++ L  +  ++  P 
Sbjct: 67  LRDLLPKQEKRHVLHL--VCNVKSGPS 91

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (92), Expect = 3e-05
 Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 5/72 (6%)

Query: 1  MRIIIVA---NGHEFVLEVGLQEPVLEIKRKIEQIF--NIPATSQTLAVSGWELVDGLDM 55
          + +++ +      +  L       V  +K  + +++        Q L  SG  L+D   +
Sbjct: 8  VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCL 67

Query: 56 EDYPIVKEGTKI 67
           D    +E   +
Sbjct: 68 RDLLPKQEKRHV 79

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (126), Expect = 6e-10
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 85  IHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYG 144
           I + +K P  K +  V  T T++ LKE+I         +++L F+G  L D   +L++ G
Sbjct: 8   IKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDP-DSLAQCG 66

Query: 145 IREFSEIIVFLKTMNR 160
           +R+   + + +K  +R
Sbjct: 67  VRDGLTVHLVIKRQHR 82

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (104), Expect = 6e-07
 Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 1/73 (1%)

Query: 1  MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPI 60
          +++ +     +    V     + ++K +I Q F        L  +G  L D   +    +
Sbjct: 8  IKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGV 67

Query: 61 VKEGTKIDLTINP 73
           ++G  + L I  
Sbjct: 68 -RDGLTVHLVIKR 79

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (124), Expect = 1e-09
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 83  DKIHIIIKFPSRK-FNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLS 141
             I + +K P    +   ++    +  LK++I    G P K+  L F G  L D    L 
Sbjct: 6   SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDW-LGLG 64

Query: 142 EYGIREFSEIIVFLK 156
            YGI++   +I+  K
Sbjct: 65  IYGIQDSDTLILSKK 79

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (93), Expect = 2e-05
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 1  MRIII-VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYP 59
          +++ +   +G  +   +     +L +K++IE    +P   Q L   G  L D L +  Y 
Sbjct: 8  IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYG 67

Query: 60 IVKEGT 65
          I    T
Sbjct: 68 IQDSDT 73

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (122), Expect = 1e-09
 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 83  DKIHIIIKFPS-RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLS 141
           + + I+++    R    +V  T TV  LK+++  ++G       L F G  L+D+   L 
Sbjct: 2   EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQ-LPLG 60

Query: 142 EYGIREFSEIIVFLK 156
           EYG++  S + + L+
Sbjct: 61  EYGLKPLSTVFMNLR 75

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 3e-06
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 1  MRIII-VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYP 59
          + I++    G     EV L + V  +K+++  +  +      L   G  L D L + +Y 
Sbjct: 4  LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 63

Query: 60 IVKEGT 65
          +    T
Sbjct: 64 LKPLST 69

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (90), Expect = 5e-05
 Identities = 9/62 (14%), Positives = 27/62 (43%)

Query: 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDIL 240
             G S   E++ + TV  L+  +   + +  + +    + + + D   L  +G++    +
Sbjct: 11  NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTV 70

Query: 241 YV 242
           ++
Sbjct: 71  FM 72

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (123), Expect = 1e-09
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 90  KFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFS 149
           K   +     +  TD V  +K KIH   G P  +  L + GI + D   +L+ Y +   +
Sbjct: 18  KLNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDS-NSLAYYNMANGA 76

Query: 150 EIIVFLK 156
            I + LK
Sbjct: 77  VIHLALK 83

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (105), Expect = 5e-07
 Identities = 16/58 (27%), Positives = 23/58 (39%)

Query: 8  NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGT 65
          NG   V  + L + V  IK KI +   +PA  Q L   G  + D   +  Y +     
Sbjct: 20 NGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAV 77

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (90), Expect = 5e-05
 Identities = 13/78 (16%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 171 SFKVQTSS------SLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMR 224
           S KVQ  +        LNG  +   +  +  V+ ++  +  +  +P       ++   ++
Sbjct: 3   SIKVQVPNMQDKTEWKLNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIK 62

Query: 225 DNCSLRWHGVEYGDILYV 242
           D+ SL ++ +  G ++++
Sbjct: 63  DSNSLAYYNMANGAVIHL 80

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.9 bits (119), Expect = 6e-09
 Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 4/73 (5%)

Query: 85  IHIIIKFPSRK-FNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEY 143
           I++ +KF +           DTV +LK K      + +K   L + G  L D  R LS  
Sbjct: 8   INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQESQMK---LIYQGRLLQDPARTLSSL 64

Query: 144 GIREFSEIIVFLK 156
            I     I     
Sbjct: 65  NITNNCVIHCHRS 77

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.0 bits (88), Expect = 1e-04
 Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 6/75 (8%)

Query: 1  MRIII-VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWEL-VDGLDMEDY 58
          + + +   N  E +     ++ V  +K K    F    +   L   G  L      +   
Sbjct: 8  INVRLKFLNDTEELAVARPEDTVGTLKSK---YFPGQESQMKLIYQGRLLQDPARTLSSL 64

Query: 59 PIVKEGTKIDLTINP 73
           I      I    +P
Sbjct: 65 NITNNCV-IHCHRSP 78

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.9 bits (119), Expect = 6e-09
 Identities = 13/88 (14%), Positives = 36/88 (40%), Gaps = 11/88 (12%)

Query: 77  SSFNQHDKIHIIIKFPS----RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIE 132
           SS +    + + IK  +    +     +  + TV+ +K  +  +   P+  +LL +   +
Sbjct: 2   SSGSSGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSK 61

Query: 133 L-------DDEFRNLSEYGIREFSEIIV 153
           +       +++ + L  Y +     ++V
Sbjct: 62  MPGREIELENDLQPLQFYSVENGDCLLV 89

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.7 bits (77), Expect = 0.004
 Identities = 6/66 (9%), Positives = 21/66 (31%), Gaps = 8/66 (12%)

Query: 8  NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWEL--------VDGLDMEDYP 59
                 ++     V ++K  + ++  +P +   L+    ++         D   ++ Y 
Sbjct: 21 ERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYS 80

Query: 60 IVKEGT 65
          +     
Sbjct: 81 VENGDC 86

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.5 bits (118), Expect = 8e-09
 Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 83  DKIHIIIKFPSRKFNID--VDRTDTVRSLKEKIHIIDGTPIKRMLLFFSG------IELD 134
           +   + I   +  F ++       ++  LK+K+ ++ GT +  M +           EL 
Sbjct: 3   EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELT 62

Query: 135 DEFRNLSEYGIREFSEIIVFLKTMNR 160
           D  ++L + G+R+   I     T   
Sbjct: 63  DGAKSLKDLGVRDGYRIHAVDVTGGN 88

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (117), Expect = 8e-09
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 85  IHIIIKFPS-RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEY 143
           + +++K    +     V     V+  KE I      P ++  L + G  L D+ + L EY
Sbjct: 1   LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDD-KKLQEY 59

Query: 144 GIRE 147
            +  
Sbjct: 60  NVGG 63

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (95), Expect = 7e-06
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 1  MRIII-VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYP 59
          + +++   +       VG Q  V E K  I    +IP+  Q L   G  L D   +++Y 
Sbjct: 1  LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 60

Query: 60 IVKEGTKIDLTINP 73
          +   G  I L    
Sbjct: 61 V--GGKVIHLVERA 72

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.9 bits (75), Expect = 0.004
 Identities = 12/62 (19%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDIL 240
           L+  +    +     V E +  + +S  +P E    I++ R+++D+  L+ + V  G ++
Sbjct: 8   LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNVG-GKVI 66

Query: 241 YV 242
           ++
Sbjct: 67  HL 68

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (119), Expect = 8e-09
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 85  IHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYG 144
           + ++I+        D   + TV  LK  +  I   P     L+     LDD  + L E G
Sbjct: 2   VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDG-KTLGECG 60

Query: 145 I 145
            
Sbjct: 61  F 61

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 13/66 (19%), Positives = 23/66 (34%)

Query: 3  IIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVK 62
          ++I  +      +      V E+KR +E I   P   Q L      L DG  + +     
Sbjct: 4  LMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTS 63

Query: 63 EGTKID 68
          +  +  
Sbjct: 64 QTARPQ 69

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (117), Expect = 9e-09
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)

Query: 85  IHIIIKFPS-RKFNIDVDRTDTVRSLKEKIHIIDGT---PIKRMLLFFSGIELDDEFRNL 140
           + I +K    + F I ++  +TV+ LKEKI    G    P+    L ++G  L D+   +
Sbjct: 3   VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDD-VPI 61

Query: 141 SEYGIREFSEIIVFL 155
            +Y I E + ++V +
Sbjct: 62  RDYRIDEKNFVVVMV 76

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (97), Expect = 5e-06
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 1  MRIII-VANGHEFVLEVGLQEPVLEIKRKIEQIF---NIPATSQTLAVSGWELVDGLDME 56
          + I +       F + +   E V  +K KIE        P   Q L  +G  L D + + 
Sbjct: 3  VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62

Query: 57 DYPIVKEGT 65
          DY I ++  
Sbjct: 63 DYRIDEKNF 71

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (115), Expect = 1e-08
 Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 6/79 (7%)

Query: 85  IHIIIKFPS-RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEY 143
           + I +K  + +   ++V+ +DT+ ++K KI   +G P  +  L F+G +L+D  R LS+Y
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDY 59

Query: 144 GIREFSEIIVFLKTMNRLR 162
            I++ S + + L    RLR
Sbjct: 60  NIQKESTLHLVL----RLR 74

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (98), Expect = 3e-06
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 1  MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYP 59
          M+I +    G    LEV   + +  +K KI+    IP   Q L  +G +L DG  + DY 
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 60 IVKEGT 65
          I KE T
Sbjct: 61 IQKEST 66

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.8 bits (116), Expect = 1e-08
 Identities = 8/72 (11%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 83  DKIHIIIKFPSRK-FNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLS 141
               + +K+   K   ++++  +     K ++  + G    R  +   G  L D+  +  
Sbjct: 6   SGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD--DWG 63

Query: 142 EYGIREFSEIIV 153
              ++    +++
Sbjct: 64  NIKMKNGMTVLM 75

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (115), Expect = 2e-08
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 5/74 (6%)

Query: 87  IIIKFPS-RKFNIDVDRTDTVRSLKEKIHI---IDGTPIKRMLLFFSGIELDDEFRNLSE 142
           + +K    + F ID+D  +TV++LKEKI      D  P+    L ++G  L+D+   L E
Sbjct: 3   VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDD-TALKE 61

Query: 143 YGIREFSEIIVFLK 156
           Y I E + ++V + 
Sbjct: 62  YKIDEKNFVVVMVT 75

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (92), Expect = 3e-05
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 1  MRIII-VANGHEFVLEVGLQEPVLEIKRKIE---QIFNIPATSQTLAVSGWELVDGLDME 56
          M++ +       F +++  +E V  +K KIE        P   Q L  +G  L D   ++
Sbjct: 1  MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 57 DYPIVKEGT 65
          +Y I ++  
Sbjct: 61 EYKIDEKNF 69

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (114), Expect = 3e-08
 Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 84  KIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSE 142
           ++ +  +    RK  ++     T R L+ KI    G     + +  +  +L      L E
Sbjct: 19  EVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGK-TLEE 77

Query: 143 YGIREFSEIIV 153
            G+    + +V
Sbjct: 78  QGVAHNVKAMV 88

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (99), Expect = 4e-06
 Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 8  NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKI 67
             + +LE  L     E++ KI + F +      + ++  +L  G  +E+  +     K 
Sbjct: 28 KDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGV-AHNVKA 86

Query: 68 DL 69
           +
Sbjct: 87 MV 88

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (90), Expect = 7e-05
 Identities = 13/72 (18%), Positives = 25/72 (34%)

Query: 171 SFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLR 230
           + +V     L       LE +   T  ELR  +  +  L       +  ++ ++   +L 
Sbjct: 17  TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLE 76

Query: 231 WHGVEYGDILYV 242
             GV +     V
Sbjct: 77  EQGVAHNVKAMV 88

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.7 bits (113), Expect = 4e-08
 Identities = 10/63 (15%), Positives = 28/63 (44%)

Query: 94  RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIV 153
             F++ V+    + + +    +  G P +   + +    L D+  +L  YG+++   +++
Sbjct: 22  VTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVL 81

Query: 154 FLK 156
             K
Sbjct: 82  LQK 84

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.9 bits (85), Expect = 4e-04
 Identities = 9/59 (15%), Positives = 16/59 (27%), Gaps = 1/59 (1%)

Query: 8  NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVD-GLDMEDYPIVKEGT 65
              F L+V     +   +   E    +PA    +      L D    +  Y +     
Sbjct: 20 TEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDM 78

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.0 bits (114), Expect = 5e-08
 Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 14/93 (15%)

Query: 83  DKIHIIIKFPSRK-FNIDVDRTDTVRSLKEKIHI--------IDGTPIKRMLLFFSGIEL 133
           D I++ +   S K         D+   + + ++            +    + L + G  L
Sbjct: 15  DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFL 74

Query: 134 DDEFRNLSEYGIREFSEIIVFLKTMNRLRDNPP 166
                 L    +      ++ L      R+  P
Sbjct: 75  HGN-VTLGALKLPFGKTTVMHL----VARETLP 102

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (83), Expect = 8e-04
 Identities = 8/72 (11%), Positives = 20/72 (27%), Gaps = 8/72 (11%)

Query: 4  IIVANGHEFVLEVGLQEPVLEIKRKI--------EQIFNIPATSQTLAVSGWELVDGLDM 55
          +I+ +G          +   +I + +        E+          L   G  L   + +
Sbjct: 21 LILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTL 80

Query: 56 EDYPIVKEGTKI 67
              +    T +
Sbjct: 81 GALKLPFGKTTV 92

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (109), Expect = 1e-07
 Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 87  IIIKFPSRKFNI---DVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEY 143
           I ++           DV R  T+  L+E++  +     +   LF+ G +L++    L +Y
Sbjct: 3   IQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENG-YTLFDY 61

Query: 144 GIREFSEIIVFLK 156
            +     I + ++
Sbjct: 62  DVGLNDIIQLLVR 74

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (88), Expect = 9e-05
 Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 12 FVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTI 71
           + +V  +  + E++ ++  +F++    Q L   G +L +G  + DY +      I L +
Sbjct: 15 TIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDI-IQLLV 73

Query: 72 NP 73
           P
Sbjct: 74 RP 75

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.5 bits (110), Expect = 1e-07
 Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 85  IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEY 143
           I ++      +K  +  +  DT+  LK+ I    GT   +++L        D   +L +Y
Sbjct: 29  IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDH-VSLGDY 87

Query: 144 GIREFSEIIVFLK 156
            I +   + ++ +
Sbjct: 88  EIHDGMNLELYYQ 100

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (83), Expect = 6e-04
 Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 8  NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKI 67
           G +  ++    + + ++K+ I            L        D + + DY I  +G  +
Sbjct: 37 LGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEI-HDGMNL 95

Query: 68 DL 69
          +L
Sbjct: 96 EL 97

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.1 bits (109), Expect = 1e-07
 Identities = 14/79 (17%), Positives = 36/79 (45%), Gaps = 5/79 (6%)

Query: 83  DKIHIIIKFPSRKFNI-DVDRTDTVRSLKEKIHIIDGTPI---KRMLLFFSGIELDDEFR 138
             + II+K+  +++++  +   DTV  LK+ +  + G      K + L   G   +++  
Sbjct: 6   SGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAEND-V 64

Query: 139 NLSEYGIREFSEIIVFLKT 157
            L    ++  ++I++    
Sbjct: 65  KLGALKLKPNTKIMMMGTR 83

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.7 bits (108), Expect = 2e-07
 Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 87  IIIKFPSRK-FNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGI 145
           + ++F S   F ++VD   ++  LKE +    G P  ++ + F+G EL +    +    +
Sbjct: 5   VFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNH-LTVQNCDL 63

Query: 146 REFSEIIVFLKTMNRLR 162
            + S + +      R R
Sbjct: 64  EQQSIVHIVQ----RPR 76

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.3 bits (94), Expect = 1e-05
 Identities = 12/66 (18%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 1  MRIII-VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYP 59
          M + +   + + F +EV     +L++K  + +   +PA    +  +G EL + L +++  
Sbjct: 3  MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCD 62

Query: 60 IVKEGT 65
          + ++  
Sbjct: 63 LEQQSI 68

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.2 bits (109), Expect = 2e-07
 Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 16/92 (17%)

Query: 85  IHIIIKFPSRK-FNIDVDRTDTVRSLKEKIHIIDGTPIKR---------------MLLFF 128
           + + +     +   + V +  TV  LK+ I        +R                 L  
Sbjct: 8   MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS 67

Query: 129 SGIELDDEFRNLSEYGIREFSEIIVFLKTMNR 160
           +G +L ++ + L +YGIR   E+    K   +
Sbjct: 68  AGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQK 99

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.6 bits (79), Expect = 0.002
 Identities = 10/85 (11%), Positives = 28/85 (32%), Gaps = 16/85 (18%)

Query: 1  MRIIIV-ANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQ---------------TLAV 44
          M + +   +G    + V     VL++K+ I++   +    +                L  
Sbjct: 8  MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS 67

Query: 45 SGWELVDGLDMEDYPIVKEGTKIDL 69
          +G +L +         ++   ++  
Sbjct: 68 AGEKLTEDRKKLRDYGIRNRDEVSF 92

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.3 bits (107), Expect = 3e-07
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 8/77 (10%)

Query: 85  IHIIIKFP--SRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSG------IELDDE 136
           + + I     S +      R+ T+   K K+ ++ G+P   M L   G       +LD E
Sbjct: 8   VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQE 67

Query: 137 FRNLSEYGIREFSEIIV 153
              L  Y + +   I V
Sbjct: 68  DALLGSYPVDDGCRIHV 84

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.7 bits (77), Expect = 0.004
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 9/74 (12%)

Query: 1  MRIIIVANGHEFVLE--VGLQEPVLEIKRKIEQIFNIPATSQTLAVSG-------WELVD 51
          + + I ++ + F  E        + E K K+E +   PA+   L + G           +
Sbjct: 8  VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQE 67

Query: 52 GLDMEDYPIVKEGT 65
             +  YP+     
Sbjct: 68 DALLGSYPVDDGCR 81

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (106), Expect = 3e-07
 Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 87  IIIKFPSRKFNI---DVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEY 143
           I ++    +       + R   V  L+ KI  +         LF+ G +++D    L +Y
Sbjct: 3   IQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDG-HTLFDY 61

Query: 144 GIREFSEIIVFLK 156
            +R    I + ++
Sbjct: 62  EVRLNDTIQLLVR 74

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (83), Expect = 4e-04
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 1  MRIIIV---ANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMED 57
          M I +          V  +     V E++RKI+++F++    Q L   G ++ DG  + D
Sbjct: 1  MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 60

Query: 58 YPIVKEGT 65
          Y +    T
Sbjct: 61 YEVRLNDT 68

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 43.3 bits (102), Expect = 1e-06
 Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 1/73 (1%)

Query: 83  DKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSE 142
             I++ +   S +    + +T  +R L E      G  +  +   + GI +  + +   +
Sbjct: 3   THINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQAD-QTPED 61

Query: 143 YGIREFSEIIVFL 155
             + +   I    
Sbjct: 62  LDMEDNDIIEAHR 74

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 42.6 bits (100), Expect = 2e-06
 Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 87  IIIKFPS-RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGI 145
           I +K  + ++  ID++ TDT+  +KE++   +G P  +  L ++G +L D+ +   +Y I
Sbjct: 3   IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADD-KTAKDYNI 61

Query: 146 REFSEIIVFLK 156
              S + + L 
Sbjct: 62  EGGSVLHLVLA 72

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (100), Expect = 2e-06
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 85  IHIIIKFPS-RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEY 143
             + ++  + +   + V  TDTV  +K ++H  +G        FFSG  L D+     E 
Sbjct: 4   CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDK-MKFEEL 62

Query: 144 GIREFSEIIVFLK 156
            I +   + V + 
Sbjct: 63  KIPKDYVVQVIVS 75

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 8e-04
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 8  NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKI 67
           G +  L V   + V  +KR++     +   SQ    SG  L D +  E+  I K+   +
Sbjct: 12 TGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYV-V 70

Query: 68 DLTINPFLQS 77
           + ++  +Q+
Sbjct: 71 QVIVSQPVQN 80

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 4/74 (5%)

Query: 87  IIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPI---KRMLLFFSGIELDDEFRNLSEY 143
            I++ P  +         ++  LK+ I       +   + + L + G +L D+   L  Y
Sbjct: 21  SILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQT-LDFY 79

Query: 144 GIREFSEIIVFLKT 157
           GI+  S + V  K+
Sbjct: 80  GIQPGSTVHVLRKS 93

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (91), Expect = 4e-05
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 86  HIIIKFPS---RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSE 142
           +I +K       + +  V  T  ++ LKE      G P+  +   F G  + D      E
Sbjct: 2   YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADN-HTPKE 60

Query: 143 YGIREFSEIIVFL 155
            G+ E   I V+ 
Sbjct: 61  LGMEEEDVIEVYQ 73

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (88), Expect = 7e-05
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 94  RKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFF--SGIELDDEFRNLSEYGIREFSEI 151
            +F + +  + +V  LK +I    G    +  L    SG+ L D    L+  G+   S +
Sbjct: 11  NEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDR-VPLASQGLGPGSTV 69

Query: 152 IVFLK 156
           ++ + 
Sbjct: 70  LLVVD 74

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (78), Expect = 0.002
 Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDY--IFIHKQRIMRDNCSLRWHGVEYG 237
           +L G    + +  S +V+EL+  +     +               ++D   L   G+  G
Sbjct: 7   MLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPG 66

Query: 238 DILYV 242
             + +
Sbjct: 67  STVLL 71

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.9 bits (85), Expect = 4e-04
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 84  KIHIIIKFPSRKFNIDVD-RTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSE 142
           ++    +   +   I V   ++ V SLKEKI      P  +  L      L D   +L+ 
Sbjct: 31  RVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKD-NMSLAH 89

Query: 143 YGIREFSEIIVFLK 156
           Y +     + + L+
Sbjct: 90  YNVGAGEILTLSLR 103

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.4 bits (84), Expect = 4e-04
 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 10/74 (13%)

Query: 82  HDKIHIIIKFPSRK--FNIDVDRTDTVRSLKEKIHI-----IDGTP--IKRMLLFFSGIE 132
           H+++ I  +                TV +LKE +        +  P  +K + L  +G  
Sbjct: 5   HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKV 64

Query: 133 LDDEFRNLSEYGIR 146
           L++  + + +Y   
Sbjct: 65  LENS-KTVKDYRSP 77

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.9 bits (77), Expect = 0.002
 Identities = 13/71 (18%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 85  IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEY 143
           I +++     +K  +     D+V   K+ + +  GT   +++L   G  L D   +L +Y
Sbjct: 2   IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDH-ISLEDY 60

Query: 144 GIREFSEIIVF 154
            + + + + ++
Sbjct: 61  EVHDQTNLELY 71

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.9 bits (77), Expect = 0.002
 Identities = 8/63 (12%), Positives = 23/63 (36%)

Query: 181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDIL 240
             G  + ++     +V + + +L           +      +++D+ SL  + V     L
Sbjct: 9   RLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNL 68

Query: 241 YVF 243
            ++
Sbjct: 69  ELY 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	252
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.84
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.83
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.83
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.82
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.82
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.82
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.8
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.8
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.8
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.8
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.79
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.79
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.79
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.79
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.78
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.78
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.78
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.78
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.78
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.77
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.76
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.76
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.76
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.75
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.75
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.74
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.73
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.72
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.72
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.72
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.71
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.71
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.71
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.71
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.71
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.68
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.68
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.68
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.67
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.67
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.66
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.65
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.65
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.65
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.65
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.64
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.64
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.64
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.63
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.63
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.63
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.63
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.63
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.61
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	99.6
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.6
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.6
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.59
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.59
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.52
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	99.46
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.45
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.41
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	99.39
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	99.37
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	99.36
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	99.34
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	99.31
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	99.3
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	99.16
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	99.15
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	99.11
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	98.54
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	98.36
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	98.34
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	98.25
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	97.87
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	97.48
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.17
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	96.01
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	95.86
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	94.84
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	94.69
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	94.09
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	94.02
d1vjka_	88	Molybdopterin synthase subunit MoaD {Pyrococcus fu	93.68
d1zud21	65	Thiamin biosynthesis sulfur carrier protein ThiS {	93.27
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	92.9
d1vjka_	88	Molybdopterin synthase subunit MoaD {Pyrococcus fu	90.67
d1wgra_	100	Growth factor receptor-bound protein 7, GRB-7 {Hum	89.07
d1xo3a_	101	C9orf74 homolog {Mouse (Mus musculus) [TaxId: 1009	88.37
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	87.34
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	85.73
d2cu3a1	63	Uncharacterised protein TTHA0675 {Thermus thermoph	84.29
d1tygb_	65	Thiamin biosynthesis sulfur carrier protein ThiS {	83.39
d1oeya_	82	Neutrophil cytosol factor 2 (p67phox component of	82.52
d1oeya_	82	Neutrophil cytosol factor 2 (p67phox component of	81.88

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=9e-21  Score=129.93  Aligned_cols=72  Identities=19%  Similarity=0.385  Sum_probs=69.0

Q ss_pred             cEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           84 KIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        84 ~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      .|+|||+ .+|++++++|++++||++||++|+++.|+|+++|+|+|+|++|+ |+.+|++|+|+++|+|||+.+
T Consensus         2 ~M~I~Vk~~~g~t~~l~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~-d~~tL~~y~I~~~sti~lv~R   74 (78)
T d2zeqa1           2 GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELP-NHLTVQNCDLEQQSIVHIVQR   74 (78)
T ss_dssp             CEEEEEESSSSSCEEEEECTTCBHHHHHHHHHHHHTCCGGGEEEEETTEEEC-TTCBGGGSSCCTTCEEEEEES
T ss_pred             ceEEEEEcCCCCEEEEEEcccccHHHHHHHHHHHHCcChhHeEEEEeeeEcC-CCCCHHHcCCCCCCEEEEEec
Confidence            4899999 58999999999999999999999999999999999999999996 899999999999999999984

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1e-20  Score=129.12  Aligned_cols=75  Identities=32%  Similarity=0.608  Sum_probs=71.3

Q ss_pred             EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCC
Q 045158           85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRD  163 (252)
Q Consensus        85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~  163 (252)
                      |+|+|+ ..|++++++|++++||++||++|+.+.|+|+++|+|+|+|+.|+ |+.+|++|+|++||+|+|++    |++|
T Consensus         1 MqI~Vk~l~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~Gk~L~-d~~tL~~y~i~~~s~I~L~~----rlrg   75 (76)
T d1ogwa_           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVL----RLRG   75 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBGGGGTCCTTCEEEEEE----CTTC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHhhhhhcCCChHHEEeEECCeEcC-CCCCHHHcCCCCCCEEEEEE----ecCC
Confidence            789999 58999999999999999999999999999999999999999996 89999999999999999999    6777


Q ss_pred             C
Q 045158          164 N  164 (252)
Q Consensus       164 ~  164 (252)
                      |
T Consensus        76 G   76 (76)
T d1ogwa_          76 G   76 (76)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.8e-20  Score=131.17  Aligned_cols=79  Identities=23%  Similarity=0.399  Sum_probs=73.3

Q ss_pred             CCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccc
Q 045158           82 HDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNR  160 (252)
Q Consensus        82 ~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~  160 (252)
                      ...|+|+|+ .+|++++++|++++||.+||++|+++.|+|+++|+|+|+|+.|+ |+.+|++|+|.++++|||+.    |
T Consensus         5 s~~mqI~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~-d~~tL~~y~I~~~stl~l~~----r   79 (87)
T d1wh3a_           5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQ-DWLGLGIYGIQDSDTLILSK----K   79 (87)
T ss_dssp             SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECC-SSSBHHHHTCCTTEEEEEEE----C
T ss_pred             CCcEEEEEECCCCCEEEEEECCcCcHHHHHHHHHHHHCcChHHeEEEeeceEcC-CCCcHHHcCCCCCCEEEEEe----c
Confidence            567999999 58999999999999999999999999999999999999999996 99999999999999999998    5


Q ss_pred             cCCCC
Q 045158          161 LRDNP  165 (252)
Q Consensus       161 ~~~~~  165 (252)
                      .++++
T Consensus        80 ~~~gp   84 (87)
T d1wh3a_          80 KGSGP   84 (87)
T ss_dssp             SCCCS
T ss_pred             CCCCC
Confidence            65554

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.83  E-value=1.7e-20  Score=127.08  Aligned_cols=71  Identities=25%  Similarity=0.419  Sum_probs=67.6

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN   72 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~   72 (252)
                      |+|+|+. +|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||.++++ |||+++
T Consensus         1 M~I~Vk~~~G~~~~l~V~~~~tV~~lK~~i~~~~gi~~~~qrLi~~Gk~L~d~~tL~~y~I~~~st-i~lvlr   72 (73)
T d1bt0a_           1 MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSV-LHLVLA   72 (73)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCE-EEEEEC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChHHEEEEECCeEcCCCCcHHHcCCCCCCE-EEEEee
Confidence            9999976 9999999999999999999999999999999999999999999999999999998887 998763

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=1.7e-20  Score=128.58  Aligned_cols=72  Identities=18%  Similarity=0.361  Sum_probs=68.3

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecC
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINP   73 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~   73 (252)
                      |+|+|+. +|++++++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |||+.++
T Consensus         3 M~I~Vk~~~g~t~~l~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~st-i~lv~R~   75 (78)
T d2zeqa1           3 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSI-VHIVQRP   75 (78)
T ss_dssp             EEEEEESSSSSCEEEEECTTCBHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCBGGGSSCCTTCE-EEEEESS
T ss_pred             eEEEEEcCCCCEEEEEEcccccHHHHHHHHHHHHCcChhHeEEEEeeeEcCCCCCHHHcCCCCCCE-EEEEecc
Confidence            8999986 9999999999999999999999999999999999999999999999999999998888 9998654

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.82  E-value=3.8e-20  Score=125.30  Aligned_cols=70  Identities=26%  Similarity=0.486  Sum_probs=67.8

Q ss_pred             EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      |.|+|| +.|++++++|++++||++||++|+++.|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|||++
T Consensus         1 M~I~Vk~~~G~~~~l~V~~~~tV~~lK~~i~~~~gi~~~~qrLi~~Gk~L~-d~~tL~~y~I~~~sti~lvl   71 (73)
T d1bt0a_           1 MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLA-DDKTAKDYNIEGGSVLHLVL   71 (73)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChHHEEEEECCeEcC-CCCcHHHcCCCCCCEEEEEe
Confidence            789999 68999999999999999999999999999999999999999996 88999999999999999998

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.9e-20  Score=125.33  Aligned_cols=73  Identities=26%  Similarity=0.464  Sum_probs=69.4

Q ss_pred             CcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           83 DKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        83 ~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      ..|+|+|+ ..|++++++|++++||++||++|+++.|+|+++|+|+|+|+.|+ |+.+|++|||++|++|||+++
T Consensus         2 ~~~qi~Vk~~~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~gk~L~-d~~tL~~y~I~~~sti~l~lR   75 (76)
T d1z2ma2           2 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLE-DQLPLGEYGLKPLSTVFMNLR   75 (76)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTCCTTCEEEEEEC
T ss_pred             CCEEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHhcCChhHeEEEECCeECC-CCCcHHHcCCCCCCEEEEEEe
Confidence            46999999 58999999999999999999999999999999999999999996 899999999999999999883

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=9e-20  Score=124.39  Aligned_cols=71  Identities=34%  Similarity=0.543  Sum_probs=67.6

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN   72 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~   72 (252)
                      |+|+|+. +|++++++|++++||.+||++|+.+.|+|+++|+|+|+|+.|+|+.+|++|||.++++ |+|+++
T Consensus         1 MqI~Vk~l~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~Gk~L~d~~tL~~y~i~~~s~-I~L~~r   72 (76)
T d1ogwa_           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST-LHLVLR   72 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCE-EEEEEC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHhhhhhcCCChHHEEeEECCeEcCCCCCHHHcCCCCCCE-EEEEEe
Confidence            9999976 9999999999999999999999999999999999999999999999999999997877 998865

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=7.7e-20  Score=124.74  Aligned_cols=71  Identities=20%  Similarity=0.321  Sum_probs=67.2

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN   72 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~   72 (252)
                      |+|+|+. +|++++++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|||.++++ |+|+++
T Consensus         4 ~qi~Vk~~~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~gk~L~d~~tL~~y~I~~~st-i~l~lR   75 (76)
T d1z2ma2           4 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLST-VFMNLR   75 (76)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCE-EEEEEC
T ss_pred             EEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHhcCChhHeEEEECCeECCCCCcHHHcCCCCCCE-EEEEEe
Confidence            7999976 9999999999999999999999999999999999999999999999999999998887 998753

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=8.8e-20  Score=124.16  Aligned_cols=73  Identities=22%  Similarity=0.416  Sum_probs=67.3

Q ss_pred             CEEEEEe-CC-eEEEE-EecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158            1 MRIIIVA-NG-HEFVL-EVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF   74 (252)
Q Consensus         1 M~v~v~~-~g-~~~~l-~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~   74 (252)
                      |+|+|+. +| +++++ +|++++||++||.+|++++|+|+++|+|+|+|+.|+|+.+|++|||.++++ |||+++|+
T Consensus         1 M~I~Vk~l~G~~t~~~~~v~~~~TV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~-i~lv~rpd   76 (76)
T d1wy8a1           1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDI-IQLLVRPD   76 (76)
T ss_dssp             EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCE-EEEEECCC
T ss_pred             CEEEEEeCCCCceEEEeccCCCChHHHHHHHHHHHHCCCchhcEEEEEeeEecCCCCHHHcCCCCCCE-EEEEEccC
Confidence            8999976 76 67887 599999999999999999999999999999999999999999999998877 99998753

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=9.6e-20  Score=127.44  Aligned_cols=73  Identities=22%  Similarity=0.340  Sum_probs=68.9

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF   74 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~   74 (252)
                      |+|+|+. +|++++++|++++||.+||++|+.++|||+++|+|+|+|+.|+|+.+|++|+|.++++ |||+.+..
T Consensus         8 mqI~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~st-l~l~~r~~   81 (87)
T d1wh3a_           8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDT-LILSKKKG   81 (87)
T ss_dssp             EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEE-EEEEECSC
T ss_pred             EEEEEECCCCCEEEEEECCcCcHHHHHHHHHHHHCcChHHeEEEeeceEcCCCCcHHHcCCCCCCE-EEEEecCC
Confidence            8999976 9999999999999999999999999999999999999999999999999999997777 99987654

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=7.6e-20  Score=125.96  Aligned_cols=74  Identities=20%  Similarity=0.333  Sum_probs=69.7

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCCC
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPFL   75 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~~   75 (252)
                      |+|+|+. +|++++++|++++||++||.+|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++ |||+++.|.
T Consensus         4 ~qi~Vk~~~G~~~~l~V~~~~tV~~lK~~I~~~~~ip~~~qrLi~~Gk~L~d~~tL~~y~I~~~st-i~lvi~~p~   78 (80)
T d1ttna1           4 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYV-VQVIVSQPV   78 (80)
T ss_dssp             EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCE-EEEECCCSS
T ss_pred             EEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCcccEEEEECceEcCCCCcHHHcCCCCCCE-EEEEecCCC
Confidence            6899976 9999999999999999999999999999999999999999999999999999998888 999987664

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.4e-19  Score=121.98  Aligned_cols=71  Identities=27%  Similarity=0.452  Sum_probs=66.1

Q ss_pred             CEEEEEe-CCe-EEEEE-ecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158            1 MRIIIVA-NGH-EFVLE-VGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN   72 (252)
Q Consensus         1 M~v~v~~-~g~-~~~l~-v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~   72 (252)
                      |+|+|+. +|+ +++++ +++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|||.++++ |||+++
T Consensus         1 M~I~Vktl~Gk~t~~l~~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~~st-i~lv~r   74 (76)
T d2faza1           1 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDT-IQLLVR   74 (76)
T ss_dssp             EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCE-EEEEEC
T ss_pred             CEEEEEeCCCCcEEEEecCCCCCCHHHHHHHHHHHHCcChHHeEEEEeeEeccCCCcHHHcCCCCCCE-EEEEEE
Confidence            8999966 775 88885 99999999999999999999999999999999999999999999998888 999875

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.5e-20  Score=125.38  Aligned_cols=72  Identities=24%  Similarity=0.341  Sum_probs=66.7

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF   74 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~   74 (252)
                      |+|+|+. +|++++++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|. +++ |||+.++|
T Consensus         1 m~I~Vk~~~g~~~~l~V~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~dy~i~-~~t-i~lv~r~P   73 (73)
T d1wx9a1           1 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNVG-GKV-IHLVERAP   73 (73)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHCCCTTTCCCEETTEECCSSSBHHHHTCT-TEE-EBCCCSSC
T ss_pred             CEEEEEcCCCCEEEEEECCCChHHHHHHHHHHHhCCChHHEEEEECCeEccCCCCHHHhCCC-CCE-EEEEecCC
Confidence            8999976 999999999999999999999999999999999999999999999999999995 666 88876543

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=2.8e-19  Score=120.88  Aligned_cols=71  Identities=27%  Similarity=0.379  Sum_probs=66.9

Q ss_pred             CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158            1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN   72 (252)
Q Consensus         1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~   72 (252)
                      |+|+|+..++.+.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|||.++++ |||+.+
T Consensus         2 i~I~Vk~~~~~~~i~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~-i~lV~~   72 (73)
T d2bwfa1           2 LNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHS-VHLVKS   72 (73)
T ss_dssp             EEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCE-EEEEEC
T ss_pred             EEEEEEeCCeEEEEEECCCChHHHHHHHHHHHHCcChHHeEEEECCeEccCCCcHHHCCCCCCCE-EEEEee
Confidence            68899998889999999999999999999999999999999999999999999999999997777 998754

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.8e-19  Score=121.65  Aligned_cols=72  Identities=21%  Similarity=0.375  Sum_probs=67.0

Q ss_pred             EEEEEE-eCC-cEEEE-eeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeee
Q 045158           85 IHIIIK-FPS-RKFNI-DVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKT  157 (252)
Q Consensus        85 ~~i~v~-~~g-~~~~l-~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~  157 (252)
                      |+|+|+ ++| +++++ +|++++||++||++|+++.|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|||+++|
T Consensus         1 M~I~Vk~l~G~~t~~~~~v~~~~TV~~lK~~I~~~~gip~~~qrLi~~Gk~L~-d~~tL~~y~I~~~s~i~lv~rp   75 (76)
T d1wy8a1           1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLE-NGYTLFDYDVGLNDIIQLLVRP   75 (76)
T ss_dssp             EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECC-SSSBHHHHTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCceEEEeccCCCChHHHHHHHHHHHHCCCchhcEEEEEeeEec-CCCCHHHcCCCCCCEEEEEEcc
Confidence            789999 577 57877 599999999999999999999999999999999996 9999999999999999999964

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=5.4e-19  Score=119.45  Aligned_cols=71  Identities=25%  Similarity=0.403  Sum_probs=67.6

Q ss_pred             cEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           84 KIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        84 ~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      +|+|+|+.+++.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+ |+.+|++|+|.+|++|||+.
T Consensus         1 si~I~Vk~~~~~~~i~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~I~~g~~i~lV~   71 (73)
T d2bwfa1           1 SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILK-DDQTVESYHIQDGHSVHLVK   71 (73)
T ss_dssp             EEEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEE
T ss_pred             CEEEEEEeCCeEEEEEECCCChHHHHHHHHHHHHCcChHHeEEEECCeEcc-CCCcHHHCCCCCCCEEEEEe
Confidence            378999988888999999999999999999999999999999999999996 88999999999999999986

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.3e-19  Score=123.24  Aligned_cols=76  Identities=25%  Similarity=0.359  Sum_probs=71.1

Q ss_pred             cCCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeee
Q 045158           81 QHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKT  157 (252)
Q Consensus        81 ~~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~  157 (252)
                      .+.+|+|+|+..+..+.++|++++||.+||++|++++|+|+++|+|+|+|+.|. |+.+|++|||.+|++|+|++++
T Consensus         4 ~~~~i~I~Vkt~~~~~~~~V~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~-D~~tL~~y~i~~gsti~lv~r~   79 (84)
T d1yqba1           4 SPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILK-DPDSLAQCGVRDGLTVHLVIKR   79 (84)
T ss_dssp             CTTEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBHHHHTCCTTCEEEEEECC
T ss_pred             CCCEEEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcCchhEEEEEeeeecc-ccCcHHHcCCCCCCEEEEEECC
Confidence            456799999987778999999999999999999999999999999999999995 9999999999999999999864

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.3e-19  Score=120.25  Aligned_cols=71  Identities=21%  Similarity=0.394  Sum_probs=66.5

Q ss_pred             EEEEEE-eCCc-EEEEe-eCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           85 IHIIIK-FPSR-KFNID-VDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        85 ~~i~v~-~~g~-~~~l~-v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      |+|+|+ ++|+ +++++ +++++||++||++|+++.|+|+++|+|+|+|+.|+ |+.+|++|+|+++++|||+++
T Consensus         1 M~I~Vktl~Gk~t~~l~~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~y~I~~~sti~lv~r   74 (76)
T d2faza1           1 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQME-DGHTLFDYEVRLNDTIQLLVR   74 (76)
T ss_dssp             EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTTTTTCCTTCEEEEEEC
T ss_pred             CEEEEEeCCCCcEEEEecCCCCCCHHHHHHHHHHHHCcChHHeEEEEeeEecc-CCCcHHHcCCCCCCEEEEEEE
Confidence            789999 6885 78885 89999999999999999999999999999999996 899999999999999999984

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.9e-19  Score=122.30  Aligned_cols=72  Identities=22%  Similarity=0.331  Sum_probs=68.9

Q ss_pred             cEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           84 KIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        84 ~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      .++|+|| .+|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|||+++
T Consensus         3 e~qi~Vk~~~G~~~~l~V~~~~tV~~lK~~I~~~~~ip~~~qrLi~~Gk~L~-d~~tL~~y~I~~~sti~lvi~   75 (80)
T d1ttna1           3 ECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLT-DKMKFEELKIPKDYVVQVIVS   75 (80)
T ss_dssp             SEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECC-TTSHHHHCCCSSSCEEEEECC
T ss_pred             eEEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCcccEEEEECceEcC-CCCcHHHcCCCCCCEEEEEec
Confidence            5899999 58999999999999999999999999999999999999999996 899999999999999999984

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=3.4e-19  Score=120.38  Aligned_cols=71  Identities=17%  Similarity=0.353  Sum_probs=67.6

Q ss_pred             cEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           84 KIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        84 ~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      +|+|+|+ ..|+++.++|++++||++||++|++++|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|+|..
T Consensus         1 mi~i~vk~~~Gk~~~v~V~~~~tV~~lK~~I~~~~~i~~~~q~Li~~Gk~L~-d~~tL~~y~I~~gstl~L~~   72 (73)
T d1m94a_           1 MIEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLK-DHISLEDYEVHDQTNLELYY   72 (73)
T ss_dssp             CEEEEEEETTTEEEEEEECTTSBHHHHHHHHHHHHCCTTTSEEEESSSCEEC-TTSBHHHHTCCTTEEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEECCcCcHHHHHHHHHHhhcccccEEEEEEEeEEec-ccCcHHHcCCCCCCEEEEEE
Confidence            4799999 58999999999999999999999999999999999999999996 88999999999999999864

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.8e-18  Score=122.93  Aligned_cols=74  Identities=22%  Similarity=0.345  Sum_probs=68.5

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhC---CCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCCC
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFN---IPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPFL   75 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~---i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~~   75 (252)
                      |+|+|+. .|++++++|++++||++||++|+++.|   +|+++|+|+|+|+.|+|+.+|++|||.++++ |+|+++++.
T Consensus         1 M~I~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~-i~lv~~~~~   78 (95)
T d1uela_           1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNF-VVVMVTKPK   78 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSE-EEEEESSCC
T ss_pred             CEEEEEeCCCCEEEEEECCCccHHHHHHHHHhhhcccCCCccceEEEECCeEccCCCcHHHcCCCCCCE-EEEEECCCC
Confidence            9999976 999999999999999999999999875   8999999999999999999999999998877 999887553

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.5e-19  Score=121.12  Aligned_cols=70  Identities=21%  Similarity=0.331  Sum_probs=66.2

Q ss_pred             EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      |+|+|+ ++|++++++|++++||++||++|+++.|+|+++|+|+|+|+.|+ |+.+|++|+| ++++|||+.+
T Consensus         1 m~I~Vk~~~g~~~~l~V~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~-d~~tL~dy~i-~~~ti~lv~r   71 (73)
T d1wx9a1           1 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQ-DDKKLQEYNV-GGKVIHLVER   71 (73)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHCCCTTTCCCEETTEECC-SSSBHHHHTC-TTEEEBCCCS
T ss_pred             CEEEEEcCCCCEEEEEECCCChHHHHHHHHHHHhCCChHHEEEEECCeEcc-CCCCHHHhCC-CCCEEEEEec
Confidence            789999 68999999999999999999999999999999999999999996 8999999999 5899998874

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=6e-19  Score=119.17  Aligned_cols=69  Identities=16%  Similarity=0.305  Sum_probs=64.9

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEE
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLT   70 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~   70 (252)
                      |+|+|+. .|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|||.++++ |+|.
T Consensus         2 i~i~vk~~~Gk~~~v~V~~~~tV~~lK~~I~~~~~i~~~~q~Li~~Gk~L~d~~tL~~y~I~~gst-l~L~   71 (73)
T d1m94a_           2 IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTN-LELY   71 (73)
T ss_dssp             EEEEEEETTTEEEEEEECTTSBHHHHHHHHHHHHCCTTTSEEEESSSCEECTTSBHHHHTCCTTEE-EEEE
T ss_pred             eEEEEECCCCCEEEEEECCcCcHHHHHHHHHHhhcccccEEEEEEEeEEecccCcHHHcCCCCCCE-EEEE
Confidence            6889966 8999999999999999999999999999999999999999999999999999997777 8874

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=9.8e-19  Score=121.37  Aligned_cols=73  Identities=16%  Similarity=0.167  Sum_probs=68.4

Q ss_pred             CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158            1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF   74 (252)
Q Consensus         1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~   74 (252)
                      |+|+|+..|..++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||.++++ |+|++++.
T Consensus         8 i~I~Vkt~~~~~~~~V~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~D~~tL~~y~i~~gst-i~lv~r~~   80 (84)
T d1yqba1           8 IKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLT-VHLVIKRQ   80 (84)
T ss_dssp             EEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCE-EEEEECCC
T ss_pred             EEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcCchhEEEEEeeeeccccCcHHHcCCCCCCE-EEEEECCC
Confidence            78999887778999999999999999999999999999999999999999999999999997877 99988765

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2e-18  Score=117.45  Aligned_cols=71  Identities=20%  Similarity=0.312  Sum_probs=67.1

Q ss_pred             EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEE--CceecccccccccccCCCCCCEEEEEee
Q 045158           85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFF--SGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~--~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      ++|.|+ ++|+.+.++|++++||++||++|+++.|+|+++|+|+|  +|+.|+ |+.+|++|||++|++|+|+++
T Consensus         1 ~~l~Vk~l~G~~~~v~V~~~~tV~~lK~~I~~~~gip~~~QrLi~~~~Gk~L~-D~~tL~~y~i~~g~~i~lv~~   74 (76)
T d1z2ma1           1 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQ-DRVPLASQGLGPGSTVLLVVD   74 (76)
T ss_dssp             CEEEEEESSSCEEEEECCSSCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCC-SSSCSGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhccCCccEEEEEcCCCeecc-CCCcHHHcCCCCCCEEEEEEE
Confidence            368999 68999999999999999999999999999999999999  699996 899999999999999999984

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.2e-18  Score=118.97  Aligned_cols=70  Identities=24%  Similarity=0.360  Sum_probs=65.4

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhC---CCCCceEEEEcCeecCCCCCccccccccCCcEEEEEe
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFN---IPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTI   71 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~---i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~   71 (252)
                      |+|+|+. +|++++++|++++||++||++|+++.|   +|+++|+|+|+|+.|+|+.+|++|||.++++ |++++
T Consensus         3 ~~i~vk~l~g~~~~l~v~~~~TV~~lK~~i~~~~g~~~i~~~~qrLi~~Gk~L~D~~tL~~y~I~~~s~-i~~~v   76 (77)
T d1oqya4           3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF-VVVMV   76 (77)
T ss_dssp             CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSC-EEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCChHHEEeEECCcCccCCCcHHHcCCCCCCE-EEEEE
Confidence            7899976 999999999999999999999999987   8999999999999999999999999998888 77764

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.6e-18  Score=116.93  Aligned_cols=71  Identities=27%  Similarity=0.352  Sum_probs=66.4

Q ss_pred             EEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEE--cCeecCCCCCccccccccCCcEEEEEecC
Q 045158            2 RIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAV--SGWELVDGLDMEDYPIVKEGTKIDLTINP   73 (252)
Q Consensus         2 ~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~--~g~~L~d~~~L~~~~i~~~~t~i~l~~~~   73 (252)
                      +|+|+. +|+.+.++|++++||.+||++|+.+.|+|+++|+|+|  +|+.|+|+.+|++|||.++++ |+|++++
T Consensus         2 ~l~Vk~l~G~~~~v~V~~~~tV~~lK~~I~~~~gip~~~QrLi~~~~Gk~L~D~~tL~~y~i~~g~~-i~lv~~~   75 (76)
T d1z2ma1           2 DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGST-VLLVVDK   75 (76)
T ss_dssp             EEEEEESSSCEEEEECCSSCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCSSSCSGGGTCCTTCE-EEEEECC
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhccCCccEEEEEcCCCeeccCCCcHHHcCCCCCCE-EEEEEEC
Confidence            688965 9999999999999999999999999999999999999  699999999999999998877 9998764

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=9.5e-18  Score=119.08  Aligned_cols=71  Identities=32%  Similarity=0.573  Sum_probs=67.2

Q ss_pred             EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhC---CCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDG---TPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~g---ip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      |+|+|+ +.|+++.++|++++||++||++|+++.|   +|+++|+|+|+|+.|+ |+.+|++|+|.+|++|+|+++
T Consensus         1 M~I~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~~Gk~L~-d~~tL~~y~I~~~s~i~lv~~   75 (95)
T d1uela_           1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILN-DDTALKEYKIDEKNFVVVMVT   75 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECC-TTSBGGGGTCCSSSEEEEEES
T ss_pred             CEEEEEeCCCCEEEEEECCCccHHHHHHHHHhhhcccCCCccceEEEECCeEcc-CCCcHHHcCCCCCCEEEEEEC
Confidence            789999 6899999999999999999999999876   8999999999999996 889999999999999999985

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4.4e-18  Score=116.12  Aligned_cols=71  Identities=28%  Similarity=0.496  Sum_probs=67.2

Q ss_pred             cEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhC---CCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           84 KIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDG---TPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        84 ~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~g---ip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      .|+|+|+ +.|++++++|++++||++||++|++..|   +|+++|+|+|+|+.|. |+.+|++|+|+++++|++++
T Consensus         2 ~~~i~vk~l~g~~~~l~v~~~~TV~~lK~~i~~~~g~~~i~~~~qrLi~~Gk~L~-D~~tL~~y~I~~~s~i~~~v   76 (77)
T d1oqya4           2 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILS-DDVPIRDYRIDEKNFVVVMV   76 (77)
T ss_dssp             CCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEEC-SSSBTTTTCCCTTSCEEEEE
T ss_pred             cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCChHHEEeEECCcCcc-CCCcHHHcCCCCCCEEEEEE
Confidence            4889999 6899999999999999999999999987   8999999999999996 89999999999999999886

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=5e-18  Score=121.02  Aligned_cols=73  Identities=18%  Similarity=0.272  Sum_probs=68.9

Q ss_pred             CCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           82 HDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        82 ~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      ..+++|+|+ ..|+.+.++|++++||++||++|++++|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|.+
T Consensus        26 ~~~i~V~V~~~~Gk~~~v~V~p~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~dygI~~GstI~L~~   99 (100)
T d1uh6a_          26 ATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFK-DHVSLGDYEIHDGMNLELYY   99 (100)
T ss_dssp             CCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECC-SSCBHHHHTCCTTEEEEEEC
T ss_pred             CceEEEEEECCCCCEEEEEECCcChHHHHHHHHHHHHCCCcceEEEEEEeeccc-CcCCHHHcCCCCCCEEEEEE
Confidence            445799999 58999999999999999999999999999999999999999996 99999999999999999975

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=3.5e-18  Score=118.25  Aligned_cols=75  Identities=24%  Similarity=0.317  Sum_probs=69.7

Q ss_pred             cCCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           81 QHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        81 ~~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      .+..|+|+|+..+..++++|++++||.+||++|++.+|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+++
T Consensus         7 ~~~~i~v~Vk~~~~~~~i~v~~~~tV~~lK~~I~~~~~v~~~~qrL~f~Gk~L~-d~~tL~~~gI~~gs~I~lv~r   81 (83)
T d1wx8a1           7 SSRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILR-DQDILSQRGILDGSTVHVVVR   81 (83)
T ss_dssp             CSCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECC-TTSCHHHHTCCTTEEEECCBC
T ss_pred             CCCeEEEEEEcCCCcEEEEECCCChHHHHHHHHHHHhCCChhHEEEEEEhhccc-cCCcHHHcCCCCCCEEEEEEe
Confidence            355799999987777899999999999999999999999999999999999996 889999999999999999874

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=6.1e-18  Score=120.54  Aligned_cols=71  Identities=14%  Similarity=0.178  Sum_probs=66.5

Q ss_pred             ceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEec
Q 045158          170 LSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFK  244 (252)
Q Consensus       170 ~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~  244 (252)
                      ++|+|+    ...|+++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|+||+|+.
T Consensus        29 i~V~V~----~~~Gk~~~v~V~p~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~dygI~~GstI~L~~   99 (100)
T d1uh6a_          29 IEVVCN----DRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY   99 (100)
T ss_dssp             EEEEEE----CSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred             EEEEEE----CCCCCEEEEEECCcChHHHHHHHHHHHHCCCcceEEEEEEeecccCcCCHHHcCCCCCCEEEEEE
Confidence            566665    46799999999999999999999999999999999999999999999999999999999999974

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.7e-17  Score=118.34  Aligned_cols=73  Identities=22%  Similarity=0.326  Sum_probs=68.6

Q ss_pred             CCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           82 HDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        82 ~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      ...|+|+|++.+..+.++|++++||.+||++|++++|+|+++|+|+|+|+.|. |+.+|++|+|++|++|||++
T Consensus        30 ~~~i~V~Vk~~~~~~~i~V~~~~tV~~LK~~I~~~~gi~~~~qrLi~~Gk~L~-D~~tL~~~~I~~g~~I~lvl  102 (103)
T d1j8ca_          30 PKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILK-DQDTLIQHGIHDGLTVHLVI  102 (103)
T ss_dssp             CCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEES-TTSCGGGTTCSSSEEEEEEE
T ss_pred             CCeEEEEEECCCccEEEEECCCChHHHHHHHHHHHHCcCHHHeeeeeeeeccc-CCCcHHHcCCCCCCEEEEEE
Confidence            44699999977777899999999999999999999999999999999999996 89999999999999999987

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=4.4e-18  Score=117.76  Aligned_cols=71  Identities=15%  Similarity=0.185  Sum_probs=66.0

Q ss_pred             CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158            1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN   72 (252)
Q Consensus         1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~   72 (252)
                      |+|+|+..+..++++|.+++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.++++ |+|+++
T Consensus        11 i~v~Vk~~~~~~~i~v~~~~tV~~lK~~I~~~~~v~~~~qrL~f~Gk~L~d~~tL~~~gI~~gs~-I~lv~r   81 (83)
T d1wx8a1          11 IRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGST-VHVVVR   81 (83)
T ss_dssp             EEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEE-EECCBC
T ss_pred             EEEEEEcCCCcEEEEECCCChHHHHHHHHHHHhCCChhHEEEEEEhhccccCCcHHHcCCCCCCE-EEEEEe
Confidence            68899887777899999999999999999999999999999999999999999999999997777 988765

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.5e-17  Score=115.63  Aligned_cols=64  Identities=25%  Similarity=0.345  Sum_probs=61.9

Q ss_pred             eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           91 FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        91 ~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      ++|++++++|++++||++||++|++++|+|+++|+|+|+|+.|. |+.+|++|+|.+|++|||++
T Consensus        19 L~G~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~Li~~Gk~L~-D~~tL~dY~I~~gsti~l~~   82 (86)
T d1zkha1          19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIK-DSNSLAYYNMANGAVIHLAL   82 (86)
T ss_dssp             CSSCEEEEEECTTSBHHHHHHHHHHHTCCCTTTEEEEETTEEEC-TTSBHHHHTCCTTEEEEEEE
T ss_pred             cCCeEEEEEECCCChHHHHHHHHHhhhcCChHHEEEEeCCcCcC-CCCCHHHcCCCCCCEEEEEE
Confidence            46899999999999999999999999999999999999999996 89999999999999999998

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.9e-17  Score=119.15  Aligned_cols=71  Identities=18%  Similarity=0.180  Sum_probs=65.6

Q ss_pred             CEEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEec
Q 045158            1 MRIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTIN   72 (252)
Q Consensus         1 M~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~   72 (252)
                      |+|+|+..+..++++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||.++++ |||+++
T Consensus        33 i~V~Vk~~~~~~~i~V~~~~tV~~LK~~I~~~~gi~~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~-I~lvlr  103 (103)
T d1j8ca_          33 IKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLT-VHLVIK  103 (103)
T ss_dssp             EEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEE-EEEEEC
T ss_pred             EEEEEECCCccEEEEECCCChHHHHHHHHHHHHCcCHHHeeeeeeeecccCCCcHHHcCCCCCCE-EEEEEC
Confidence            68889886667899999999999999999999999999999999999999999999999997766 998763

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.71  E-value=7.4e-18  Score=122.45  Aligned_cols=76  Identities=25%  Similarity=0.216  Sum_probs=68.3

Q ss_pred             EEEEEE-e-CCcEEEEeeCC-CccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeecccc
Q 045158           85 IHIIIK-F-PSRKFNIDVDR-TDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRL  161 (252)
Q Consensus        85 ~~i~v~-~-~g~~~~l~v~~-~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~  161 (252)
                      ++|+|+ . +|++++++|.+ ++||.+||++|++++|+|+++|+|+|+|+.|+ |+.+|++|+|++|++|||.+    |+
T Consensus        30 i~V~v~~~~~G~~i~l~v~~~sdtV~~lK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~ynI~~gsti~L~l----r~  104 (111)
T d1we6a_          30 IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLK-DNMSLAHYNVGAGEILTLSL----RE  104 (111)
T ss_dssp             EEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCC-TTSBTTTTTCSSSCEEEEEC----SS
T ss_pred             EEEEcccCCCCeEEEEEecCCccHHHHHHHHHHHHHCCCccceEEEEeeEEcc-ccCCHHHcCCCCCCEEEEEe----eC
Confidence            344444 2 48999999987 99999999999999999999999999999996 89999999999999999999    78


Q ss_pred             CCCC
Q 045158          162 RDNP  165 (252)
Q Consensus       162 ~~~~  165 (252)
                      |||+
T Consensus       105 rGG~  108 (111)
T d1we6a_         105 RSGP  108 (111)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            8875

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=8.4e-18  Score=121.29  Aligned_cols=76  Identities=22%  Similarity=0.265  Sum_probs=69.8

Q ss_pred             CCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEE---------------EEECceecccccccccccCC
Q 045158           82 HDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRML---------------LFFSGIELDDEFRNLSEYGI  145 (252)
Q Consensus        82 ~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~---------------L~~~g~~L~~d~~~L~~y~i  145 (252)
                      ...|.|+|+ .+|+.++++|++++||++||++|+++.++|+++|+               |+|+|+.|.||..+|.+|+|
T Consensus         5 ss~M~v~Vk~~~G~~~~v~V~~~~TV~~LK~~I~~~~~ip~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d~~~tL~~~gI   84 (105)
T d1v2ya_           5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI   84 (105)
T ss_dssp             CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred             CCcEEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcCHHHhcccccccccccccceEEEECCEECcccCCCHHHcCC
Confidence            457999999 68999999999999999999999999999999997               99999999745579999999


Q ss_pred             CCCCEEEEEeee
Q 045158          146 REFSEIIVFLKT  157 (252)
Q Consensus       146 ~~~s~i~l~~~~  157 (252)
                      .+|++|||+.++
T Consensus        85 ~~g~~l~lv~r~   96 (105)
T d1v2ya_          85 RNRDEVSFIKKL   96 (105)
T ss_dssp             CSSEEEEEEECS
T ss_pred             CCCCEEEEEEec
Confidence            999999999843

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=5.5e-17  Score=116.20  Aligned_cols=75  Identities=15%  Similarity=0.357  Sum_probs=68.5

Q ss_pred             CCcEEEEE----E-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           82 HDKIHIII----K-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        82 ~~~~~i~v----~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      ...|.|+|    + ..+.+++++|++++||.+||++|+.+.|+|+++|+|+|+|+.|.+|..+|++|||++|++|+|+.+
T Consensus         5 ~~~m~itV~~~~~~~~~~t~~l~V~~~~tV~~LK~~Ie~~~gip~~~Q~Li~~Gk~L~dd~~tL~~~gI~~g~~i~l~~r   84 (102)
T d1v5oa_           5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK   84 (102)
T ss_dssp             SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred             cCCEEEEEEecccCCCCCEEEEEECCcccHHHHHHHHHHHhCCCcceEEEEeCCeEeecccCCHHHcCCCCCCEEEEEEC
Confidence            45688998    4 468899999999999999999999999999999999999999965778999999999999999875

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.2e-17  Score=113.29  Aligned_cols=64  Identities=14%  Similarity=0.237  Sum_probs=62.0

Q ss_pred             cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEec
Q 045158          181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFK  244 (252)
Q Consensus       181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~  244 (252)
                      ++|++++++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.||++|||++||+|+|+-
T Consensus        19 L~G~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~Li~~Gk~L~D~~tL~dY~I~~gsti~l~~   82 (86)
T d1zkha1          19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLAL   82 (86)
T ss_dssp             CSSCEEEEEECTTSBHHHHHHHHHHHTCCCTTTEEEEETTEEECTTSBHHHHTCCTTEEEEEEE
T ss_pred             cCCeEEEEEECCCChHHHHHHHHHhhhcCChHHEEEEeCCcCcCCCCCHHHcCCCCCCEEEEEE
Confidence            5799999999999999999999999999999999999999999999999999999999999963

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.67  E-value=1.6e-16  Score=112.53  Aligned_cols=75  Identities=17%  Similarity=0.179  Sum_probs=65.6

Q ss_pred             CEEEEEe-CCeEE-EEEecCCCcHHHHHHHHHHH-----hCCC--CCceEEEEcCeecCCCCCccccccccCC-----cE
Q 045158            1 MRIIIVA-NGHEF-VLEVGLQEPVLEIKRKIEQI-----FNIP--ATSQTLAVSGWELVDGLDMEDYPIVKEG-----TK   66 (252)
Q Consensus         1 M~v~v~~-~g~~~-~l~v~~~~tV~~lK~~I~~~-----~~i~--~~~q~L~~~g~~L~d~~~L~~~~i~~~~-----t~   66 (252)
                      |.|.|+. +|+.+ .+.+++++||.+||.+|++.     .|+|  +++|||+|+|+.|+|+.+|++|+|..+.     +.
T Consensus         8 i~I~~r~~~G~~i~~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~Gk~L~D~~tL~dy~i~~g~~~~~~~t   87 (101)
T d1se9a_           8 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT   87 (101)
T ss_dssp             EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred             EEEEEEeCCCCeecceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEECCeEecCCCCHHHcCCCCCCcCCCceE
Confidence            5788866 88877 69999999999999999876     6888  7899999999999999999999998665     24


Q ss_pred             EEEEecCCC
Q 045158           67 IDLTINPFL   75 (252)
Q Consensus        67 i~l~~~~~~   75 (252)
                      +||+++++.
T Consensus        88 mHlVvrpp~   96 (101)
T d1se9a_          88 MHVIIQAPV   96 (101)
T ss_dssp             EEEEECCCS
T ss_pred             EEEEeCCCC
Confidence            999998764

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=9.3e-17  Score=115.00  Aligned_cols=77  Identities=18%  Similarity=0.316  Sum_probs=69.8

Q ss_pred             cceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeec-CCccccccCCCCCCEEEEecC
Q 045158          169 RLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMR-DNCSLRWHGVEYGDILYVFKG  245 (252)
Q Consensus       169 ~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~-d~~tL~~y~I~~gsti~l~~~  245 (252)
                      -|.|.|....+.+.+.+++++|++.+||++||+.|+.+.|+|+++|+|+|+|+.|. |+.||++|||++||+|+|+..
T Consensus         7 ~m~itV~~~~~~~~~~t~~l~V~~~~tV~~LK~~Ie~~~gip~~~Q~Li~~Gk~L~dd~~tL~~~gI~~g~~i~l~~r   84 (102)
T d1v5oa_           7 GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK   84 (102)
T ss_dssp             CEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred             CEEEEEEecccCCCCCEEEEEECCcccHHHHHHHHHHHhCCCcceEEEEeCCeEeecccCCHHHcCCCCCCEEEEEEC
Confidence            37888866666788999999999999999999999999999999999999999995 668999999999999999744

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.66  E-value=6.2e-17  Score=117.50  Aligned_cols=64  Identities=23%  Similarity=0.316  Sum_probs=61.1

Q ss_pred             cCCceEEEEecC-CCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEec
Q 045158          181 LNGASIPLEMQD-SSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFK  244 (252)
Q Consensus       181 ~~g~~~~l~v~~-~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~  244 (252)
                      .+|++++++|.+ ++||++||++|++++|+|+++|+|+|+|+.|+|++||++|+|++|+||+|.-
T Consensus        38 ~~G~~i~l~v~~~sdtV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ynI~~gsti~L~l  102 (111)
T d1we6a_          38 NDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSL  102 (111)
T ss_dssp             SSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEEC
T ss_pred             CCCeEEEEEecCCccHHHHHHHHHHHHHCCCccceEEEEeeEEccccCCHHHcCCCCCCEEEEEe
Confidence            469999999986 8999999999999999999999999999999999999999999999999973

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=2.3e-16  Score=115.22  Aligned_cols=76  Identities=12%  Similarity=0.130  Sum_probs=66.6

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHH--------HHHhCCCCCceEEEEcCeecCCCCCccccccccCCc-EEEEE
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKI--------EQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGT-KIDLT   70 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I--------~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t-~i~l~   70 (252)
                      |+|+|++ +|+++.++|++++||.+||++|        +++.++|+++|||+|.|+.|+|+.+|++|+|.++++ .+||+
T Consensus        17 i~i~v~~l~Gk~~~~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~Gk~L~D~~tL~~~~i~~g~~~~lhlv   96 (116)
T d1wgha_          17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV   96 (116)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred             EEEEEEEcCCCEEEEEECCcchHHHHHHHHHhhcccccccccCCChHHeEEEECCEEecCCCCHHHcCCCCCCEEEEEEE
Confidence            4677755 9999999999999999999999        577899999999999999999999999999997764 47888


Q ss_pred             ecCCCC
Q 045158           71 INPFLQ   76 (252)
Q Consensus        71 ~~~~~~   76 (252)
                      +++..+
T Consensus        97 ~r~~~~  102 (116)
T d1wgha_          97 ARETLP  102 (116)
T ss_dssp             ECSSCS
T ss_pred             eCCCCC
Confidence            776543

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.3e-16  Score=108.36  Aligned_cols=73  Identities=21%  Similarity=0.347  Sum_probs=66.5

Q ss_pred             cEEEEEEeCCcEEEEee-----CCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           84 KIHIIIKFPSRKFNIDV-----DRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        84 ~~~i~v~~~g~~~~l~v-----~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      +|.|.|++.++.+.+++     ++++||++||++|++.+|+|+++|+|+|+|+.|.+|..+|++|||++|++|+|+.+
T Consensus         1 gi~i~V~~~~~~~~i~v~~~~~~~~~Tv~~LK~~I~~~tgvp~~~QkL~~~G~~L~~d~~tL~~~gi~~g~~i~lv~~   78 (81)
T d1wxva1           1 GLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK   78 (81)
T ss_dssp             SEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred             CEEEEEEECCeeEEEEEecCCCCCccHHHHHHHHHHHHHCcCHHHEEeeecCeEeCcCCCChHHCCCCCCCEEEEEEe
Confidence            37888888888888888     46889999999999999999999999999999965778999999999999999874

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.4e-16  Score=111.84  Aligned_cols=74  Identities=16%  Similarity=0.252  Sum_probs=68.3

Q ss_pred             CEEEEEeCCeEEEE-EecCCCcHHHHHHHHHHHhCCCCCceEEE---EcCeecCCCCCccccccccCCcEEEEEecCCC
Q 045158            1 MRIIIVANGHEFVL-EVGLQEPVLEIKRKIEQIFNIPATSQTLA---VSGWELVDGLDMEDYPIVKEGTKIDLTINPFL   75 (252)
Q Consensus         1 M~v~v~~~g~~~~l-~v~~~~tV~~lK~~I~~~~~i~~~~q~L~---~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~~   75 (252)
                      |+|+|+..|+.+.+ +|++++||.+||++|++++|+|+++|+|+   |.|+.|+|+.+|++|+|.++++ |+|+.++..
T Consensus         8 ~~i~Vk~~~~~~~i~~v~~~~tV~~LK~~i~~~t~vp~~~QkLi~~~~~Gk~L~D~~tL~~~~i~~g~~-i~lv~s~~~   85 (90)
T d1v5ta_           8 LPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTK-IMMMGTRES   85 (90)
T ss_dssp             CCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEE-EEEECCCSS
T ss_pred             EEEEEEECCeEEEEEEeCCCCcHHHHHHHHHHHHcCCHHHhhhhhhccCCcCCCCcCcHHHcCCCCCCE-EEEEeeCCC
Confidence            78999999999988 69999999999999999999999999999   6899999999999999997766 999887653

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=3.8e-16  Score=110.20  Aligned_cols=73  Identities=25%  Similarity=0.235  Sum_probs=66.3

Q ss_pred             CCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeee
Q 045158           82 HDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKT  157 (252)
Q Consensus        82 ~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~  157 (252)
                      ..+|+|+|| ++|+.+.++|++++||.+||++|+   .+|+++|+|+|+|+.|.||.++|++|+|.+|++|||++++
T Consensus         5 ~s~m~i~vK~l~~~~~~v~v~~~~TV~~lK~~i~---~~~~~~qrLi~~Gk~L~dd~~tL~~y~i~~g~~v~l~~~~   78 (95)
T d1wiaa_           5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYF---PGQESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSP   78 (95)
T ss_dssp             CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHS---SSTTTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCC
T ss_pred             CCcEEEEEEcCCCCEEEEEECCcCcHHHHHHHHh---cCCcceeEEEECCEEcccCCCCHHHcCCCCCCEEEEEEcC
Confidence            557999999 589999999999999999999986   5688999999999999757789999999999999999853

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=3e-16  Score=110.03  Aligned_cols=75  Identities=19%  Similarity=0.342  Sum_probs=69.6

Q ss_pred             CCcEEEEEEeCCcEEEE-eeCCCccHHHHHHHHHHHhCCCCccEEEE---ECceecccccccccccCCCCCCEEEEEeee
Q 045158           82 HDKIHIIIKFPSRKFNI-DVDRTDTVRSLKEKIHIIDGTPIKRMLLF---FSGIELDDEFRNLSEYGIREFSEIIVFLKT  157 (252)
Q Consensus        82 ~~~~~i~v~~~g~~~~l-~v~~~~TV~~lK~~I~~~~gip~~~q~L~---~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~  157 (252)
                      +..|.|+|++.++.+.+ ++++++||.+||++|++++|+|+++|+|+   |.|+.|. |+.+|++|+|++|++|+|+.++
T Consensus         5 s~~~~i~Vk~~~~~~~i~~v~~~~tV~~LK~~i~~~t~vp~~~QkLi~~~~~Gk~L~-D~~tL~~~~i~~g~~i~lv~s~   83 (90)
T d1v5ta_           5 SSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAE-NDVKLGALKLKPNTKIMMMGTR   83 (90)
T ss_dssp             CCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECC-TTSBHHHHTCCTTEEEEEECCC
T ss_pred             CCcEEEEEEECCeEEEEEEeCCCCcHHHHHHHHHHHHcCCHHHhhhhhhccCCcCCC-CcCcHHHcCCCCCCEEEEEeeC
Confidence            45789999999999888 79999999999999999999999999999   7999996 8899999999999999998754

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=1.7e-16  Score=112.38  Aligned_cols=73  Identities=25%  Similarity=0.372  Sum_probs=68.2

Q ss_pred             CCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           82 HDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        82 ~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      ...|.|.|++.++++.++|++++||++||++|++.+|+|+++|+|+|+|+ |. |+.+|++|+|++|++|+|+.+
T Consensus        15 ~~~i~v~V~~~~k~~~i~v~~~~TV~~LK~~I~~~tgvp~~~q~Li~~g~-l~-D~~tL~~~~I~~gs~i~lvgs   87 (95)
T d1v86a_          15 KELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VP-EDKTLREIKVTSGAKIMVVGS   87 (95)
T ss_dssp             CCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSB-CC-SSSBHHHHCCCTTEEEEECCS
T ss_pred             ccEEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEeccc-cc-CCCcHHHCCCCCCCEEEEEec
Confidence            44689999999999999999999999999999999999999999999996 85 889999999999999999874

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.64  E-value=8.8e-16  Score=108.69  Aligned_cols=75  Identities=19%  Similarity=0.321  Sum_probs=67.4

Q ss_pred             CCcEEEEEE-eCCcEE-EEeeCCCccHHHHHHHHHHH-----hCCC--CccEEEEECceecccccccccccCCCCCC---
Q 045158           82 HDKIHIIIK-FPSRKF-NIDVDRTDTVRSLKEKIHII-----DGTP--IKRMLLFFSGIELDDEFRNLSEYGIREFS---  149 (252)
Q Consensus        82 ~~~~~i~v~-~~g~~~-~l~v~~~~TV~~lK~~I~~~-----~gip--~~~q~L~~~g~~L~~d~~~L~~y~i~~~s---  149 (252)
                      ...|.|.++ .+|+.+ ++.+++++||.+||++|++.     .|+|  +++|+|+|+|+.|+ |+.+|++|+|.+|+   
T Consensus         5 ~~~i~I~~r~~~G~~i~~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~Gk~L~-D~~tL~dy~i~~g~~~~   83 (101)
T d1se9a_           5 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLE-NSKTVKDYRSPVSNLAG   83 (101)
T ss_dssp             CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECC-TTSBGGGGSCCTTSCTT
T ss_pred             cceEEEEEEeCCCCeecceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEECCeEec-CCCCHHHcCCCCCCcCC
Confidence            456899999 578876 79999999999999999876     6888  88999999999996 99999999999997   


Q ss_pred             ---EEEEEeee
Q 045158          150 ---EIIVFLKT  157 (252)
Q Consensus       150 ---~i~l~~~~  157 (252)
                         ++||+++|
T Consensus        84 ~~~tmHlVvrp   94 (101)
T d1se9a_          84 AVTTMHVIIQA   94 (101)
T ss_dssp             CCEEEEEEECC
T ss_pred             CceEEEEEeCC
Confidence               99999965

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=2.2e-16  Score=111.98  Aligned_cols=72  Identities=15%  Similarity=0.138  Sum_probs=64.2

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCCcEEEEEecCC
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEGTKIDLTINPF   74 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~t~i~l~~~~~   74 (252)
                      |+|+|+. +++.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|||.++++ |+|+.++.
T Consensus         8 ~~I~VK~~~~~~~~v~v~~~~tV~~lK~~i~~~~gvp~~~QkLi~~Gk~L~d~-tL~~~gi~~g~~-i~lv~t~~   80 (96)
T d1wgga_           8 YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMT-VLMMGSAD   80 (96)
T ss_dssp             EEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCE-EECCCCCC
T ss_pred             eEEEEEeCCCCEEEEEECCCCcHHHHHHHhhhhcCccceeeEEeecCcccCCC-cHHHCCCCCCCE-EEEEeeCC
Confidence            5788988 555568999999999999999999999999999999999999986 799999997777 89887654

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.1e-16  Score=111.82  Aligned_cols=71  Identities=18%  Similarity=0.069  Sum_probs=65.8

Q ss_pred             eccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecC
Q 045158          179 SLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSR  249 (252)
Q Consensus       179 ~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~  249 (252)
                      +...|++++++|++++||++||++|+++.|+|+++|+|+|+|++|+|+.||++|||+++++|+++..+-+.
T Consensus        25 ~~~~g~~~~lev~~~~TV~~LK~~I~~~~gi~~~~qkLi~~Gk~L~d~~tL~~~gI~~~s~i~vi~~~~~~   95 (100)
T d1wjua_          25 RLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELKQSS   95 (100)
T ss_dssp             TTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCCCCC
T ss_pred             ccCCCeEEEEEECCCcHHHHHHHHHHHHHCCCCeeEEEEEcccCcCCCcCHHHcCCCCCCEEEEEEcCCCC
Confidence            45679999999999999999999999999999999999999999999999999999999999998655443

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.4e-16  Score=107.49  Aligned_cols=72  Identities=15%  Similarity=0.224  Sum_probs=64.5

Q ss_pred             CEEEEEeCCeEEEEEe-----cCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecC-CCCCccccccccCCcEEEEEecC
Q 045158            1 MRIIIVANGHEFVLEV-----GLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELV-DGLDMEDYPIVKEGTKIDLTINP   73 (252)
Q Consensus         1 M~v~v~~~g~~~~l~v-----~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~-d~~~L~~~~i~~~~t~i~l~~~~   73 (252)
                      |.|+|+.++..+.+++     ++++||++||++|++.+|+|+++|+|+|+|+.|. |+.+|++|||.++++ |+|+.++
T Consensus         2 i~i~V~~~~~~~~i~v~~~~~~~~~Tv~~LK~~I~~~tgvp~~~QkL~~~G~~L~~d~~tL~~~gi~~g~~-i~lv~~~   79 (81)
T d1wxva1           2 LTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCR-VMLIGKK   79 (81)
T ss_dssp             EEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEE-EEEESCC
T ss_pred             EEEEEEECCeeEEEEEecCCCCCccHHHHHHHHHHHHHCcCHHHEEeeecCeEeCcCCCChHHCCCCCCCE-EEEEEec
Confidence            6788888999999998     4688999999999999999999999999999996 567999999997766 8888754

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.1e-15  Score=111.46  Aligned_cols=75  Identities=9%  Similarity=0.097  Sum_probs=67.5

Q ss_pred             cCCcEEEEEE-eCCcEEEEeeCCCccHHHHHHHH--------HHHhCCCCccEEEEECceecccccccccccCCCCCCE-
Q 045158           81 QHDKIHIIIK-FPSRKFNIDVDRTDTVRSLKEKI--------HIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSE-  150 (252)
Q Consensus        81 ~~~~~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I--------~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~-  150 (252)
                      ....|+|+|+ ++|+++.+.|++++||.+||++|        ++..++|+++|+|+|.|+.|. |+.+|++|+|.+|++ 
T Consensus        13 ~~~~i~i~v~~l~Gk~~~~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~Gk~L~-D~~tL~~~~i~~g~~~   91 (116)
T d1wgha_          13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLH-GNVTLGALKLPFGKTT   91 (116)
T ss_dssp             CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEEC-SSCBTTTTTCCSSCEE
T ss_pred             CCCeEEEEEEEcCCCEEEEEECCcchHHHHHHHHHhhcccccccccCCChHHeEEEECCEEec-CCCCHHHcCCCCCCEE
Confidence            4567999999 68999999999999999999999        467799999999999999996 999999999999987 


Q ss_pred             -EEEEee
Q 045158          151 -IIVFLK  156 (252)
Q Consensus       151 -i~l~~~  156 (252)
                       |||+++
T Consensus        92 ~lhlv~r   98 (116)
T d1wgha_          92 VMHLVAR   98 (116)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEeC
Confidence             566664

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=9.1e-16  Score=108.21  Aligned_cols=71  Identities=15%  Similarity=0.075  Sum_probs=63.5

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecC-CCCCccccccccCCcEEEEEecCCC
Q 045158            1 MRIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELV-DGLDMEDYPIVKEGTKIDLTINPFL   75 (252)
Q Consensus         1 M~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~-d~~~L~~~~i~~~~t~i~l~~~~~~   75 (252)
                      |+|+|+. +|+.+.++|++++||.+||++|+   .+++++|+|+|+|+.|. |.++|++|+|.++++ |||+++++.
T Consensus         8 m~i~vK~l~~~~~~v~v~~~~TV~~lK~~i~---~~~~~~qrLi~~Gk~L~dd~~tL~~y~i~~g~~-v~l~~~~~~   80 (95)
T d1wiaa_           8 INVRLKFLNDTEELAVARPEDTVGTLKSKYF---PGQESQMKLIYQGRLLQDPARTLSSLNITNNCV-IHCHRSPPG   80 (95)
T ss_dssp             EEEEEEETTTEEEEEEECSSSBHHHHHHHHS---SSTTTTCEEEETTEECCCSSCBTTTTTCCTTEE-EEEECCCCC
T ss_pred             EEEEEEcCCCCEEEEEECCcCcHHHHHHHHh---cCCcceeEEEECCEEcccCCCCHHHcCCCCCCE-EEEEEcCCC
Confidence            7899977 99999999999999999999986   56889999999999997 557999999997776 999987764

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=3.6e-16  Score=110.64  Aligned_cols=77  Identities=22%  Similarity=0.182  Sum_probs=68.1

Q ss_pred             cccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCe
Q 045158          167 IRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGT  246 (252)
Q Consensus       167 ~~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~  246 (252)
                      ...|.+.|.     ++++++.++|++++||++||++|++.+|+|+++|+|+|+|+ |+|+.+|.+|+|++|++|+|+-..
T Consensus        15 ~~~i~v~V~-----~~~k~~~i~v~~~~TV~~LK~~I~~~tgvp~~~q~Li~~g~-l~D~~tL~~~~I~~gs~i~lvgs~   88 (95)
T d1v86a_          15 KELVDLKII-----WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIKVTSGAKIMVVGST   88 (95)
T ss_dssp             CCCEEEEEE-----ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSB-CCSSSBHHHHCCCTTEEEEECCSS
T ss_pred             ccEEEEEEE-----ECCEEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEeccc-ccCCCcHHHCCCCCCCEEEEEecC
Confidence            344666654     68999999999999999999999999999999999999996 899999999999999999998655


Q ss_pred             ecC
Q 045158          247 VSR  249 (252)
Q Consensus       247 ~~~  249 (252)
                      ..+
T Consensus        89 ~~g   91 (95)
T d1v86a_          89 ISG   91 (95)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            443

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.4e-15  Score=108.37  Aligned_cols=62  Identities=19%  Similarity=0.277  Sum_probs=56.8

Q ss_pred             EEE--EeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccccccccCC
Q 045158            3 III--VANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGWELVDGLDMEDYPIVKEG   64 (252)
Q Consensus         3 v~v--~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~   64 (252)
                      |+|  ...+.++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|||.+++
T Consensus         2 ifv~i~~~k~Ti~l~v~~~~TV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~TL~dYgI~~~~   65 (103)
T d2c9wb1           2 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQT   65 (103)
T ss_dssp             EEEEEEEBTEEEEEEECTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTT
T ss_pred             EEEEEeCCCEEEEEEeCCCCcHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCccc
Confidence            555  44777899999999999999999999999999999999999999999999999997554

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=2e-16  Score=113.98  Aligned_cols=76  Identities=17%  Similarity=0.223  Sum_probs=67.6

Q ss_pred             cccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceE---------------EeecCeeecCC-cccc
Q 045158          167 IRRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYI---------------FIHKQRIMRDN-CSLR  230 (252)
Q Consensus       167 ~~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~---------------l~~~g~~l~d~-~tL~  230 (252)
                      ...|.|.|+    +..|+.++++|++++||++||++|+++.++|+++|+               |+|+|+.|.|+ .||.
T Consensus         5 ss~M~v~Vk----~~~G~~~~v~V~~~~TV~~LK~~I~~~~~ip~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d~~~tL~   80 (105)
T d1v2ya_           5 SSGMTVRVC----KMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLR   80 (105)
T ss_dssp             CCSEEEEEE----CSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHH
T ss_pred             CCcEEEEEE----eCCCCEEEEEECCCChHHHHHHHHHHHHCcCHHHhcccccccccccccceEEEECCEECcccCCCHH
Confidence            345888876    578999999999999999999999999999999886               99999999766 6999


Q ss_pred             ccCCCCCCEEEEecCe
Q 045158          231 WHGVEYGDILYVFKGT  246 (252)
Q Consensus       231 ~y~I~~gsti~l~~~~  246 (252)
                      +|||++||||+|+...
T Consensus        81 ~~gI~~g~~l~lv~r~   96 (105)
T d1v2ya_          81 DYGIRNRDEVSFIKKL   96 (105)
T ss_dssp             HHTCCSSEEEEEEECS
T ss_pred             HcCCCCCCEEEEEEec
Confidence            9999999999998543

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=9.2e-16  Score=109.32  Aligned_cols=71  Identities=20%  Similarity=0.205  Sum_probs=64.7

Q ss_pred             cEEEEE--E-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           84 KIHIII--K-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        84 ~~~i~v--~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      +|+|++  + ..|+.++++|++++||++||.+|+++.|+|+++|+|+|+|+.|+ |+.+|++|+|+++++|+++.
T Consensus        17 ti~V~~~~~~~~g~~~~lev~~~~TV~~LK~~I~~~~gi~~~~qkLi~~Gk~L~-d~~tL~~~gI~~~s~i~vi~   90 (100)
T d1wjua_          17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQ-LGKTLEEQGVAHNVKAMVLE   90 (100)
T ss_dssp             EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECC-TTSBHHHHTCCSSEEEEEEC
T ss_pred             EEEEEEeeccCCCeEEEEEECCCcHHHHHHHHHHHHHCCCCeeEEEEEcccCcC-CCcCHHHcCCCCCCEEEEEE
Confidence            356666  3 36899999999999999999999999999999999999999996 89999999999999999886

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=9.5e-16  Score=108.62  Aligned_cols=71  Identities=10%  Similarity=0.057  Sum_probs=63.6

Q ss_pred             ccceeeEEeeeeccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEe
Q 045158          168 RRLSFKVQTSSSLLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVF  243 (252)
Q Consensus       168 ~~~~i~v~~~~~~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~  243 (252)
                      ..|+|.|+    ..+++.+.++|++++||++||++|++.+|+|+++|+|+|+|++|+|+ +|.+|||++|++|+|+
T Consensus         6 ~~~~I~VK----~~~~~~~~v~v~~~~tV~~lK~~i~~~~gvp~~~QkLi~~Gk~L~d~-tL~~~gi~~g~~i~lv   76 (96)
T d1wgga_           6 SGYSVTVK----WGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMM   76 (96)
T ss_dssp             CEEEEEEE----ETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECC
T ss_pred             CceEEEEE----eCCCCEEEEEECCCCcHHHHHHHhhhhcCccceeeEEeecCcccCCC-cHHHCCCCCCCEEEEE
Confidence            45777776    34566668999999999999999999999999999999999999985 8999999999999997

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.3e-15  Score=105.90  Aligned_cols=75  Identities=19%  Similarity=0.184  Sum_probs=63.6

Q ss_pred             CEEEEEe-C--CeEEEEEecCCCcHHHHHHHHHHHhC--CCCCceEEEEcCeecCCCCCccccccccCC-cEEEEEecCC
Q 045158            1 MRIIIVA-N--GHEFVLEVGLQEPVLEIKRKIEQIFN--IPATSQTLAVSGWELVDGLDMEDYPIVKEG-TKIDLTINPF   74 (252)
Q Consensus         1 M~v~v~~-~--g~~~~l~v~~~~tV~~lK~~I~~~~~--i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~-t~i~l~~~~~   74 (252)
                      |+|+|+. +  +..+++++++++||.+||++|++..+  +|+++|||+|+|+.|+|+.+|++|....++ ..|||+.++.
T Consensus         8 i~l~Ik~~~~~~~~~~~~v~~~~TV~~LK~~I~~~~~~~~~~~~qrLIy~Gk~L~D~~~L~d~~~~~~~~~viHLV~~~~   87 (93)
T d1wgda_           8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVK   87 (93)
T ss_dssp             CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCC
T ss_pred             EEEEEECCCCCceeEEEEcCCCCcHHHHHHHHHHHcCCCCChHHEEEEECCeEccCCCCHHHhCcccCCCCEEEEEecCC
Confidence            7889976 3  34599999999999999999999965  999999999999999999999999875443 3499987655


Q ss_pred             C
Q 045158           75 L   75 (252)
Q Consensus        75 ~   75 (252)
                      .
T Consensus        88 ~   88 (93)
T d1wgda_          88 S   88 (93)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2e-14  Score=102.27  Aligned_cols=70  Identities=19%  Similarity=0.200  Sum_probs=61.1

Q ss_pred             EEEE--eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCC-------CCCEEEEEeee
Q 045158           87 IIIK--FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIR-------EFSEIIVFLKT  157 (252)
Q Consensus        87 i~v~--~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~-------~~s~i~l~~~~  157 (252)
                      |||+  ..+.++.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+ |+.+|++|||.       ..++++|.++.
T Consensus         2 ifv~i~~~k~Ti~l~v~~~~TV~~lK~~I~~~~gip~~~QrLi~~Gk~L~-D~~TL~dYgI~~~~~~~~~~~~~~l~~~~   80 (103)
T d2c9wb1           2 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLD-DGKTLGECGFTSQTARPQAPATVGLAFRA   80 (103)
T ss_dssp             EEEEEEEBTEEEEEEECTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBHHHHTCCTTTSBTTBCEEEEEEEEE
T ss_pred             EEEEEeCCCEEEEEEeCCCCcHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCcccccccCCcEEEEEEec
Confidence            5555  45667999999999999999999999999999999999999996 99999999995       45578887753

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.5e-14  Score=100.52  Aligned_cols=74  Identities=16%  Similarity=0.193  Sum_probs=63.6

Q ss_pred             CcEEEEEEe-CC--cEEEEeeCCCccHHHHHHHHHHHhC--CCCccEEEEECceecccccccccccCCCCC--CEEEEEe
Q 045158           83 DKIHIIIKF-PS--RKFNIDVDRTDTVRSLKEKIHIIDG--TPIKRMLLFFSGIELDDEFRNLSEYGIREF--SEIIVFL  155 (252)
Q Consensus        83 ~~~~i~v~~-~g--~~~~l~v~~~~TV~~lK~~I~~~~g--ip~~~q~L~~~g~~L~~d~~~L~~y~i~~~--s~i~l~~  155 (252)
                      ..|.|+|+. ++  ..+.+++++++||.+||++|++..+  +|+++|+|+|+|+.|+ |+.+|++|..+.+  .+|||++
T Consensus         6 ~~i~l~Ik~~~~~~~~~~~~v~~~~TV~~LK~~I~~~~~~~~~~~~qrLIy~Gk~L~-D~~~L~d~~~~~~~~~viHLV~   84 (93)
T d1wgda_           6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLL-DHQCLRDLLPKQEKRHVLHLVC   84 (93)
T ss_dssp             CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECC-SSSCHHHHSCSSSCSEEEEEEC
T ss_pred             CcEEEEEECCCCCceeEEEEcCCCCcHHHHHHHHHHHcCCCCChHHEEEEECCeEcc-CCCCHHHhCcccCCCCEEEEEe
Confidence            358899994 33  4599999999999999999999965  9999999999999996 9999999976544  4999998


Q ss_pred             ee
Q 045158          156 KT  157 (252)
Q Consensus       156 ~~  157 (252)
                      ++
T Consensus        85 ~~   86 (93)
T d1wgda_          85 NV   86 (93)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=99.46  E-value=1.8e-13  Score=93.15  Aligned_cols=75  Identities=13%  Similarity=0.231  Sum_probs=68.5

Q ss_pred             EEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEeeeccccCCC
Q 045158           85 IHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLKTMNRLRDN  164 (252)
Q Consensus        85 ~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~~~~~~~~~  164 (252)
                      +.|.|+.+|+.+.+.|..++++..|++.++++.|+|+++|+|+|+|+.|. +..|+++|++++|++|++++    |++||
T Consensus         5 I~ikv~~~~~~~~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f~G~~l~-~~~T~~~~~i~dgd~I~v~~----~q~GG   79 (79)
T d1euvb_           5 INLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHR----EQIGG   79 (79)
T ss_dssp             EEEEEESSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGEEEEETTEECC-TTCCTTTTTCCTTEEEEEEE----CCBCC
T ss_pred             EEEEECCCCeEEEEEECCCCcHHHHHHHHHHHhCCChHhEEEEECCEEeC-CCCCHHHCCCCCCCEEEEEE----eccCC
Confidence            55666667888889999999999999999999999999999999999995 88999999999999999998    66665

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=1.1e-13  Score=97.38  Aligned_cols=75  Identities=24%  Similarity=0.285  Sum_probs=65.5

Q ss_pred             CCcEEEEEEe--CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECcee------cccccccccccCCCCCCEEEE
Q 045158           82 HDKIHIIIKF--PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIE------LDDEFRNLSEYGIREFSEIIV  153 (252)
Q Consensus        82 ~~~~~i~v~~--~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~------L~~d~~~L~~y~i~~~s~i~l  153 (252)
                      ...+.|+|+.  ++......++++.||.+||++|+..+|+|+++|+|+|.|+.      |.+|+.+|++|+|.+|++|||
T Consensus         5 ss~v~v~I~s~~~~~~~E~r~~~~~TV~~LK~kle~~tGip~~~qrL~~~~~~~~~~~~l~~d~~~L~~y~i~dg~~ihl   84 (95)
T d1v6ea_           5 SSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV   84 (95)
T ss_dssp             CCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred             CCcEEEEEEECCCCcEEEEEeCCCCCHHHHHHHHHHHhCcCchhEEEEEeCCCCceeecccCCcCCHHHCCCCCCCEEEE
Confidence            3468889985  45568889999999999999999999999999999998862      436999999999999999999


Q ss_pred             Eee
Q 045158          154 FLK  156 (252)
Q Consensus       154 ~~~  156 (252)
                      +.+
T Consensus        85 vd~   87 (95)
T d1v6ea_          85 IDH   87 (95)
T ss_dssp             BCC
T ss_pred             EeC
Confidence            874

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=2.2e-13  Score=95.84  Aligned_cols=73  Identities=18%  Similarity=0.178  Sum_probs=63.4

Q ss_pred             CEEEEEe--CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCe-------ecCCCCCccccccccCCcEEEEEe
Q 045158            1 MRIIIVA--NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGW-------ELVDGLDMEDYPIVKEGTKIDLTI   71 (252)
Q Consensus         1 M~v~v~~--~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~-------~L~d~~~L~~~~i~~~~t~i~l~~   71 (252)
                      |.|+|+.  ++......+++++||.+||++|+..+|+|+++|+|+|.|+       .++|+.+|++|++.++.+ |||+.
T Consensus         8 v~v~I~s~~~~~~~E~r~~~~~TV~~LK~kle~~tGip~~~qrL~~~~~~~~~~~~l~~d~~~L~~y~i~dg~~-ihlvd   86 (95)
T d1v6ea_           8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCR-IHVID   86 (95)
T ss_dssp             EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCE-EEEBC
T ss_pred             EEEEEEECCCCcEEEEEeCCCCCHHHHHHHHHHHhCcCchhEEEEEeCCCCceeecccCCcCCHHHCCCCCCCE-EEEEe
Confidence            5678876  5555778899999999999999999999999999999886       588889999999997766 99987


Q ss_pred             cCC
Q 045158           72 NPF   74 (252)
Q Consensus        72 ~~~   74 (252)
                      +.+
T Consensus        87 ~~p   89 (95)
T d1v6ea_          87 HSG   89 (95)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            655

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=99.39  E-value=8.1e-13  Score=89.88  Aligned_cols=64  Identities=9%  Similarity=0.123  Sum_probs=61.1

Q ss_pred             CCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecC
Q 045158          182 NGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKG  245 (252)
Q Consensus       182 ~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~  245 (252)
                      .|+.+.+.|.++++++.|++.++++.|+|+++++|+|+|+.|+++.|+++|+|++||+|+++-.
T Consensus        12 ~~~~~~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f~G~~l~~~~T~~~~~i~dgd~I~v~~~   75 (79)
T d1euvb_          12 GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE   75 (79)
T ss_dssp             SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred             CCeEEEEEECCCCcHHHHHHHHHHHhCCChHhEEEEECCEEeCCCCCHHHCCCCCCCEEEEEEe
Confidence            5888889999999999999999999999999999999999999999999999999999999843

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=1.9e-13  Score=95.24  Aligned_cols=56  Identities=20%  Similarity=0.308  Sum_probs=49.5

Q ss_pred             ecCCCcHHHHHHHHhhcC--CCC-CCceEEeecCeeecCCccccccCCCCCCEEEEecC
Q 045158          190 MQDSSTVNELRHLLLSSK--ILP-REDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKG  245 (252)
Q Consensus       190 v~~~~tV~~Lk~~i~~~~--gip-~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~  245 (252)
                      +..+.||.+||++|.++.  ++| +++|+|+|+|+.|+|+.+|++|||++|+||+|+..
T Consensus        34 ~~~~~tV~~lK~~i~~~~~~~~P~p~~~rLIy~Gk~L~D~~tL~~y~I~~gstihLV~r   92 (94)
T d1x1ma1          34 SLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVHVLRK   92 (94)
T ss_dssp             CCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTCEEEEEES
T ss_pred             CCCccCHHHHHHHHHHHcccCCCChhheEEEECCeEECCCccHHHcCCCCCCEEEEEEe
Confidence            345789999999998774  565 58999999999999999999999999999999854

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=1.5e-12  Score=91.93  Aligned_cols=64  Identities=23%  Similarity=0.283  Sum_probs=57.8

Q ss_pred             ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCe-------eec-CCccccccCCCCCCEEEEe
Q 045158          180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQR-------IMR-DNCSLRWHGVEYGDILYVF  243 (252)
Q Consensus       180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~-------~l~-d~~tL~~y~I~~gsti~l~  243 (252)
                      .+.++.++++|+.+.||.+||.+|+..+|+|+++|+|+|.|+       .|+ |+++|.+|||++|++|++-
T Consensus        19 ~~~~~~~~~kv~~~~TV~~LK~~i~~~~gip~~~qrL~y~~~~~~~~~~~l~~d~~tL~~YgI~dg~~I~V~   90 (97)
T d1wjna_          19 QPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR   90 (97)
T ss_dssp             CSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEecCCCCCcccceecCCCcCHhhccCCCCCEEEEE
Confidence            366889999999999999999999999999999999999875       345 6799999999999999984

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=1.3e-12  Score=92.32  Aligned_cols=71  Identities=18%  Similarity=0.321  Sum_probs=61.9

Q ss_pred             EEEEEEe----CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECce-------ecccccccccccCCCCCCEEEE
Q 045158           85 IHIIIKF----PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGI-------ELDDEFRNLSEYGIREFSEIIV  153 (252)
Q Consensus        85 ~~i~v~~----~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~-------~L~~d~~~L~~y~i~~~s~i~l  153 (252)
                      +.|.|+.    .++.++++++.++||.+||.+|++.+|+|+++|+|+|.|+       +|.+|+++|.+|+|.+|++|++
T Consensus        10 iti~i~~~~~~~~~~~~~kv~~~~TV~~LK~~i~~~~gip~~~qrL~y~~~~~~~~~~~l~~d~~tL~~YgI~dg~~I~V   89 (97)
T d1wjna_          10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLV   89 (97)
T ss_dssp             EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEE
T ss_pred             EEEEEEeCCCCCCceEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEecCCCCCcccceecCCCcCHhhccCCCCCEEEE
Confidence            4555553    3567899999999999999999999999999999999886       4766889999999999999998


Q ss_pred             Ee
Q 045158          154 FL  155 (252)
Q Consensus       154 ~~  155 (252)
                      ..
T Consensus        90 ~~   91 (97)
T d1wjna_          90 RW   91 (97)
T ss_dssp             EC
T ss_pred             Ee
Confidence            65

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=1.2e-12  Score=91.07  Aligned_cols=69  Identities=23%  Similarity=0.256  Sum_probs=55.3

Q ss_pred             EEEEeCCcEEEEeeCCCccHHHHHHHHHHHh--CCC-CccEEEEECceecccccccccccCCCCCCEEEEEee
Q 045158           87 IIIKFPSRKFNIDVDRTDTVRSLKEKIHIID--GTP-IKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFLK  156 (252)
Q Consensus        87 i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~--gip-~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~~  156 (252)
                      ..+++++......+..+.||.+||++|+++.  ++| +++|+|+|+|+.|+ |+.+|++|+|++|++|||+.+
T Consensus        21 ~~i~~p~~~~~~~~~~~~tV~~lK~~i~~~~~~~~P~p~~~rLIy~Gk~L~-D~~tL~~y~I~~gstihLV~r   92 (94)
T d1x1ma1          21 SILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLK-DDQTLDFYGIQPGSTVHVLRK   92 (94)
T ss_dssp             EEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECC-TTCBHHHHTCCTTCEEEEEES
T ss_pred             ceEECCCCccCccCCCccCHHHHHHHHHHHcccCCCChhheEEEECCeEEC-CCccHHHcCCCCCCEEEEEEe
Confidence            4555544333333455889999999999886  455 68999999999996 999999999999999999873

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.30  E-value=5.4e-12  Score=87.77  Aligned_cols=71  Identities=20%  Similarity=0.248  Sum_probs=60.5

Q ss_pred             EEEEEEe--CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECce------ecccccccccccCCCCCCEEEEEe
Q 045158           85 IHIIIKF--PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGI------ELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        85 ~~i~v~~--~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~------~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      +.+.|..  ++..+...++++.||.+||.+|+..+|+|++.|+|+|.|+      .|.+|+.+|.+|||.+|++||++-
T Consensus         5 ~~l~it~~~t~~~~E~r~~~~~TV~~LK~kle~~~Gip~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi~dG~~Ihvvd   83 (90)
T d1t0ya_           5 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVD   83 (90)
T ss_dssp             EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEE
T ss_pred             EEEEEEECCCccEEEEecCCCCCHHHHHHHHHHHHCCChhheEEEEeCCCCCcccccccCCCCHHHCCCCCCCEEEEEe
Confidence            3455554  3445778899999999999999999999999999999776      465789999999999999999975

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=7.1e-11  Score=79.58  Aligned_cols=70  Identities=23%  Similarity=0.378  Sum_probs=65.7

Q ss_pred             EEEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           85 IHIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        85 ~~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      +.|.|+ ..|+.+.+.|..++++..|+...+++.|+|+++++|+|+|+.|. +..|++++++.+|++|++++
T Consensus         3 I~ikv~~~dg~~v~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~l~-~~~T~~~l~~edgD~Idv~~   73 (77)
T d2uyzb1           3 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIA-DNHTPKELGMEEEDVIEVYQ   73 (77)
T ss_dssp             EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCHHHHTCCTTEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCChhHEEEEECCEECC-CCCCHHHcCCCCCCEEEEEE
Confidence            567777 47889999999999999999999999999999999999999996 88999999999999999998

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.15  E-value=6.3e-11  Score=82.23  Aligned_cols=68  Identities=10%  Similarity=0.062  Sum_probs=55.6

Q ss_pred             EEEEe--CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcCe-------ecCCCCCccccccccCCcEEEEEe
Q 045158            3 IIIVA--NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSGW-------ELVDGLDMEDYPIVKEGTKIDLTI   71 (252)
Q Consensus         3 v~v~~--~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g~-------~L~d~~~L~~~~i~~~~t~i~l~~   71 (252)
                      +.|+.  ++..+...+++++||.+||.+|+..+|+|+..|+|+|.|+       .++|+.+|.+||+.++++ ||++=
T Consensus         7 l~it~~~t~~~~E~r~~~~~TV~~LK~kle~~~Gip~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi~dG~~-Ihvvd   83 (90)
T d1t0ya_           7 LEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYR-IHAVD   83 (90)
T ss_dssp             EEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEE-EEEEE
T ss_pred             EEEEECCCccEEEEecCCCCCHHHHHHHHHHHHCCChhheEEEEeCCCCCcccccccCCCCHHHCCCCCCCE-EEEEe
Confidence            44544  3444667789999999999999999999999999999886       456778999999996655 88763

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=9.3e-11  Score=78.98  Aligned_cols=65  Identities=15%  Similarity=0.298  Sum_probs=61.9

Q ss_pred             ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEec
Q 045158          180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFK  244 (252)
Q Consensus       180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~  244 (252)
                      ...|+.+.+.|.+++++..|++..+++.|+|+++++|+|+|+.|.++.|++++++++||+|.++-
T Consensus         9 ~~dg~~v~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~l~~~~T~~~l~~edgD~Idv~~   73 (77)
T d2uyzb1           9 GQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ   73 (77)
T ss_dssp             CTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEE
T ss_pred             CCCCCEEEEEECCCChHHHHHHHHHHHhCCChhHEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence            35789999999999999999999999999999999999999999999999999999999999874

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.54  E-value=7.1e-08  Score=65.09  Aligned_cols=69  Identities=19%  Similarity=0.106  Sum_probs=53.8

Q ss_pred             EEEEeCCcEEEEeeC-CCccHHHHHHHHHHHhCCCCccEEEEEC--------------ceecccccccccccCCCCCCEE
Q 045158           87 IIIKFPSRKFNIDVD-RTDTVRSLKEKIHIIDGTPIKRMLLFFS--------------GIELDDEFRNLSEYGIREFSEI  151 (252)
Q Consensus        87 i~v~~~g~~~~l~v~-~~~TV~~lK~~I~~~~gip~~~q~L~~~--------------g~~L~~d~~~L~~y~i~~~s~i  151 (252)
                      |.++...-+..++|+ ++.||.+||++|++..++|.+.|.|..+              -..|.||..+|+++||.+||.|
T Consensus         3 iRiRsrdG~eRv~v~~~~~Tl~~LK~~Ie~~L~VPv~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~sl~i~hGsiv   82 (94)
T d1wf9a1           3 LRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMV   82 (94)
T ss_dssp             EEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEE
T ss_pred             EEEEecCCceEEEecCCCCcHHHHHHHHHHHhCCCcccceeecChhhhccCCccccchhhhccCCccCHHHcCccCceEE
Confidence            344433334556664 4789999999999999999999999643              2346667788999999999999


Q ss_pred             EEEe
Q 045158          152 IVFL  155 (252)
Q Consensus       152 ~l~~  155 (252)
                      +|..
T Consensus        83 yL~y   86 (94)
T d1wf9a1          83 YLAY   86 (94)
T ss_dssp             ECCC
T ss_pred             EEEe
Confidence            9876

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=8.2e-07  Score=58.23  Aligned_cols=62  Identities=13%  Similarity=0.201  Sum_probs=59.4

Q ss_pred             CCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEe
Q 045158          182 NGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVF  243 (252)
Q Consensus       182 ~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~  243 (252)
                      .|+.+.+.|..+.+...|.+..+++.|+|+...+|.|+|+.+..+.|-+++++++||+|.++
T Consensus        10 ~g~~v~f~vk~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~i~~~~Tp~~l~med~D~Idv~   71 (72)
T d1wm3a_          10 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             TSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             CCCEEEEEEcCCChHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            58889999999999999999999999999999999999999999999999999999999886

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.34  E-value=3.5e-07  Score=61.67  Aligned_cols=67  Identities=16%  Similarity=0.190  Sum_probs=51.5

Q ss_pred             EEEEeCCeEEEEEec-CCCcHHHHHHHHHHHhCCCCCceEEEEc--------------CeecCCCC-CccccccccCCcE
Q 045158            3 IIIVANGHEFVLEVG-LQEPVLEIKRKIEQIFNIPATSQTLAVS--------------GWELVDGL-DMEDYPIVKEGTK   66 (252)
Q Consensus         3 v~v~~~g~~~~l~v~-~~~tV~~lK~~I~~~~~i~~~~q~L~~~--------------g~~L~d~~-~L~~~~i~~~~t~   66 (252)
                      |.|.....+..++|+ ++.||.+||.+|++..+||.+.|.|..+              -..|.|+. +|+++||.+++. 
T Consensus         3 iRiRsrdG~eRv~v~~~~~Tl~~LK~~Ie~~L~VPv~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~sl~i~hGsi-   81 (94)
T d1wf9a1           3 LRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSM-   81 (94)
T ss_dssp             EEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCE-
T ss_pred             EEEEecCCceEEEecCCCCcHHHHHHHHHHHhCCCcccceeecChhhhccCCccccchhhhccCCccCHHHcCccCceE-
Confidence            445556667888985 4789999999999999999999999532              23466665 699999986654 


Q ss_pred             EEEE
Q 045158           67 IDLT   70 (252)
Q Consensus        67 i~l~   70 (252)
                      |+|.
T Consensus        82 vyL~   85 (94)
T d1wf9a1          82 VYLA   85 (94)
T ss_dssp             EECC
T ss_pred             EEEE
Confidence            7664

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=3.7e-06  Score=54.97  Aligned_cols=68  Identities=13%  Similarity=0.253  Sum_probs=61.3

Q ss_pred             EEEEE-eCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEE
Q 045158           86 HIIIK-FPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVF  154 (252)
Q Consensus        86 ~i~v~-~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~  154 (252)
                      .|.|+ ..|+.+.+.|..+++...|...-+++.|+|++..+++|+|..+. +..|.+++++.+|++|.+.
T Consensus         3 ~lkv~~~~g~~v~f~vk~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~i~-~~~Tp~~l~med~D~Idv~   71 (72)
T d1wm3a_           3 NLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECC-TTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCccceEEEECCEEcC-CCCCHHHcCCCCCCEEEEE
Confidence            45555 36788999999999999999999999999999999999999995 8899999999999999864

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=2.4e-05  Score=50.85  Aligned_cols=68  Identities=10%  Similarity=0.103  Sum_probs=64.2

Q ss_pred             cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeec
Q 045158          181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVS  248 (252)
Q Consensus       181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~  248 (252)
                      .+|++.++.|.++.|+.++-++.++++|+.++++.|.|+++.++-+-.+...|+.+|+.++|+..+-+
T Consensus         8 ~~~rR~~VKvtP~t~l~~VL~eaC~k~~~~~~~~~Lkh~~k~ldLsl~~R~sgLpnnakLELv~~s~~   75 (76)
T d2al3a1           8 PNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSRS   75 (76)
T ss_dssp             TTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSSC
T ss_pred             CCCcEEEEEeCCCcCHHHHHHHHHHHhCCChhHceeeeCCEEcCccceeeecCCCCCCEEEEEEcccC
Confidence            57999999999999999999999999999999999999999999999999999999999999976544

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.48  E-value=0.00034  Score=45.23  Aligned_cols=63  Identities=11%  Similarity=0.025  Sum_probs=59.4

Q ss_pred             CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEECceecccccccccccCCCCCCEEEEEe
Q 045158           92 PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFSGIELDDEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        92 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      +|+..++.|.|++|+.++-+...+++|+.+++..|.++++.| |-+..+...|+.+|+.+.|+-
T Consensus         9 ~~rR~~VKvtP~t~l~~VL~eaC~k~~~~~~~~~Lkh~~k~l-dLsl~~R~sgLpnnakLELv~   71 (76)
T d2al3a1           9 NGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVL-DLSLQWRFANLPNNAKLEMVP   71 (76)
T ss_dssp             TSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEE-SSSCBHHHHCCCSSCEEEEEC
T ss_pred             CCcEEEEEeCCCcCHHHHHHHHHHHhCCChhHceeeeCCEEc-CccceeeecCCCCCCEEEEEE
Confidence            588899999999999999999999999999999999999999 588999999999999999874

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.17  E-value=0.018  Score=38.23  Aligned_cols=67  Identities=16%  Similarity=0.212  Sum_probs=54.7

Q ss_pred             cEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHh-CCCCccEEEEE--CceecccccccccccCCCCCCEE
Q 045158           84 KIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIID-GTPIKRMLLFF--SGIELDDEFRNLSEYGIREFSEI  151 (252)
Q Consensus        84 ~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~-gip~~~q~L~~--~g~~L~~d~~~L~~y~i~~~s~i  151 (252)
                      ...|-|++ +|..+...+..++||.+|..-+.... +.+.....|..  -.+.+.|++.||.+.|+.+. +|
T Consensus        14 ~t~I~iRlPdG~~~~~~F~~~~tl~dv~~~v~~~~~~~~~~~f~L~t~~Prr~l~d~~~TL~e~gL~~s-~v   84 (89)
T d1i42a_          14 TTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNA-VI   84 (89)
T ss_dssp             CEEEEEEETTTCCEEEEECSSSCGGGHHHHHHHHCTTTSSCCEEEEETTTTEECCCCSSCSGGGTTCCS-EE
T ss_pred             cEEEEEEcCCCCEEEEEECCchhHHHHHHHHHHhCccCCCCCEEEecCCCCcccCCCcCcHHHCCCcCc-eE
Confidence            45788896 58889999999999999999998764 67777788875  46788778899999999864 44

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.028  Score=36.58  Aligned_cols=71  Identities=11%  Similarity=0.134  Sum_probs=57.4

Q ss_pred             cEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEE--ECceecc--cccccccccCCCCCCEEEEEe
Q 045158           84 KIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF--FSGIELD--DEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        84 ~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~--~~g~~L~--~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      ...|-|++ +|+.+.-.+..++|+.+|..-|.. .+.++....|.  |..+.+.  |++.+|.+.|+.+.++|++.-
T Consensus         5 ~~~i~iRlPdG~~~~~~F~~~~tl~~v~~~v~~-~~~~~~~~~l~~~~Pr~~l~~~d~~~TL~e~gL~p~~~L~vq~   80 (82)
T d1h8ca_           5 VSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA   80 (82)
T ss_dssp             CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHH-HTCCSSSEEEEETTTTEETTTCCTTSBHHHHCCCSEEEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHh-cCCCCCceEEEecCcccccccccccCCHHHCCCCCCCEEEEEe
Confidence            45788886 578888999999999999999987 47777777777  4667773  456899999999999988753

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.018  Score=37.50  Aligned_cols=62  Identities=16%  Similarity=0.186  Sum_probs=50.8

Q ss_pred             ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEe--ecCeee---cCCccccccCCCCCCEEEE
Q 045158          180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFI--HKQRIM---RDNCSLRWHGVEYGDILYV  242 (252)
Q Consensus       180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~--~~g~~l---~d~~tL~~y~I~~gsti~l  242 (252)
                      ..+|+++.-.-..++|+.+|.+-+... +.+.+.+.|.  |..+.+   +.+.||.+.|+-+.++|++
T Consensus        12 lPdG~~~~~~F~~~~tl~~v~~~v~~~-~~~~~~~~l~~~~Pr~~l~~~d~~~TL~e~gL~p~~~L~v   78 (82)
T d1h8ca_          12 TPSGEFLERRFLASNKLQIVFDFVASK-GFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFL   78 (82)
T ss_dssp             CTTSCEEEEEECTTSBHHHHHHHHHHH-TCCSSSEEEEETTTTEETTTCCTTSBHHHHCCCSEEEEEE
T ss_pred             CCCCCEEEEEECCCCcHHHHHHHHHhc-CCCCCceEEEecCcccccccccccCCHHHCCCCCCCEEEE
Confidence            467888888899999999999999874 6667777665  466666   3567999999999999987

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.84  E-value=0.061  Score=35.44  Aligned_cols=63  Identities=21%  Similarity=0.248  Sum_probs=49.8

Q ss_pred             EEEEEe-CCeEEEEEecCCCcHHHHHHHHHHHh-CCCCCceEEEEc--CeecCCC-CCccccccccCCc
Q 045158            2 RIIIVA-NGHEFVLEVGLQEPVLEIKRKIEQIF-NIPATSQTLAVS--GWELVDG-LDMEDYPIVKEGT   65 (252)
Q Consensus         2 ~v~v~~-~g~~~~l~v~~~~tV~~lK~~I~~~~-~i~~~~q~L~~~--g~~L~d~-~~L~~~~i~~~~t   65 (252)
                      +|.|++ +|..+.....+++||.+|...+.... +.+.....|+-.  -+.|.|. .||.+.|+. +++
T Consensus        16 ~I~iRlPdG~~~~~~F~~~~tl~dv~~~v~~~~~~~~~~~f~L~t~~Prr~l~d~~~TL~e~gL~-~s~   83 (89)
T d1i42a_          16 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLL-NAV   83 (89)
T ss_dssp             EEEEEETTTCCEEEEECSSSCGGGHHHHHHHHCTTTSSCCEEEEETTTTEECCCCSSCSGGGTTC-CSE
T ss_pred             EEEEEcCCCCEEEEEECCchhHHHHHHHHHHhCccCCCCCEEEecCCCCcccCCCcCcHHHCCCc-Cce
Confidence            356666 89999999999999999999998764 566666778754  6678655 499999998 555

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.69  E-value=0.071  Score=35.54  Aligned_cols=74  Identities=12%  Similarity=0.080  Sum_probs=56.5

Q ss_pred             cCCcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEE--ECceecc-cccccccccCCCCCCEEEEEe
Q 045158           81 QHDKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF--FSGIELD-DEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        81 ~~~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~--~~g~~L~-~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      ..+...|-||+ +|+.+.-.+..++||.+|..-+.... .......|.  |-.+.+. +.+.||.+.|+.+.++|+|.-
T Consensus        13 ~~~~~~i~iRlPdG~r~~r~F~~~dtl~~l~~fv~~~~-~~~~~f~l~~~~Pr~~~~~d~~~TL~e~gl~p~~~L~v~~   90 (96)
T d2cr5a1          13 AEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVG-YHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE   90 (96)
T ss_dssp             CSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHHT-CCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred             CCCeEEEEEECCCCCEEEEEECCcccHHHHHHHHHHhc-cCcccceeecCCCceecCccCCCcHHHCCCCCCCEEEEec
Confidence            34568899997 68888889999999999999997654 444556665  3335553 456899999999999988754

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.09  E-value=0.077  Score=37.27  Aligned_cols=73  Identities=19%  Similarity=0.308  Sum_probs=56.8

Q ss_pred             CCcEEEEEEe-CCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEE--ECceecc--cccccccccCCCCCCEEEEEe
Q 045158           82 HDKIHIIIKF-PSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLF--FSGIELD--DEFRNLSEYGIREFSEIIVFL  155 (252)
Q Consensus        82 ~~~~~i~v~~-~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~--~~g~~L~--~d~~~L~~y~i~~~s~i~l~~  155 (252)
                      .....|-||+ +|+.+...+..++||.+|..-|... +.+.....|+  |--+.|.  |...+|.+.|+.+.++|+|.-
T Consensus        41 ~p~~~l~iRlPdG~r~~r~F~~~~tl~~l~~~v~~~-~~~~~~~~L~~~fPr~~l~~~d~~~TL~e~gL~P~~~L~vee  118 (124)
T d1wj4a_          41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE  118 (124)
T ss_dssp             SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred             CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-ccCCcceEEeecccccccccccccCcHHHcCCCCCCEEEEEe
Confidence            3357899997 6888999999999999999999875 4555666665  4556663  456899999999999988754

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.02  E-value=0.086  Score=36.99  Aligned_cols=63  Identities=14%  Similarity=0.242  Sum_probs=50.1

Q ss_pred             ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEe--ecCeee---cCCccccccCCCCCCEEEEe
Q 045158          180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFI--HKQRIM---RDNCSLRWHGVEYGDILYVF  243 (252)
Q Consensus       180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~--~~g~~l---~d~~tL~~y~I~~gsti~l~  243 (252)
                      ..+|+++...-..++||.+|...+... +.+...+.|.  |-.+.+   +.+.||.+.|+-+..+|+|=
T Consensus        50 lPdG~r~~r~F~~~~tl~~l~~~v~~~-~~~~~~~~L~~~fPr~~l~~~d~~~TL~e~gL~P~~~L~ve  117 (124)
T d1wj4a_          50 YPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ  117 (124)
T ss_dssp             CTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred             CCCCCEEEEEeCCCCcHHHHHHHHHhc-ccCCcceEEeecccccccccccccCcHHHcCCCCCCEEEEE
Confidence            467888888899999999999999765 4555666665  445666   34689999999999999874

>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: Molybdopterin synthase subunit MoaD
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.68  E-value=0.21  Score=32.41  Aligned_cols=70  Identities=16%  Similarity=0.131  Sum_probs=46.1

Q ss_pred             ceeeEEeeee--c-cCCceEEEEecCCCcHHHHHHHHhhcCCC-----------CCCceEEeecCeeecCCccccccCCC
Q 045158          170 LSFKVQTSSS--L-LNGASIPLEMQDSSTVNELRHLLLSSKIL-----------PREDYIFIHKQRIMRDNCSLRWHGVE  235 (252)
Q Consensus       170 ~~i~v~~~~~--~-~~g~~~~l~v~~~~tV~~Lk~~i~~~~gi-----------p~~~~~l~~~g~~l~d~~tL~~y~I~  235 (252)
                      |+|.|+.|..  . .+.....+++....||.+|++.+.++++-           .....++.-+|+.-++     ++-++
T Consensus         2 mkI~v~~Fa~lre~~G~~~~~~~~~~~~Tv~~l~~~L~~~~~~~~~~l~~~~~~~~~~i~iavN~~~~~~-----d~~L~   76 (88)
T d1vjka_           2 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK   76 (88)
T ss_dssp             EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred             eEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHChHHHHHhhhccccccccEEEEEcceEcCC-----CcCcC
Confidence            4555554431  1 23456778998889999999999876421           1223455556655443     46789


Q ss_pred             CCCEEEEec
Q 045158          236 YGDILYVFK  244 (252)
Q Consensus       236 ~gsti~l~~  244 (252)
                      +||+|-+++
T Consensus        77 ~gDevai~P   85 (88)
T d1vjka_          77 DGDVVGVFP   85 (88)
T ss_dssp             TTCEEEEES
T ss_pred             CCCEEEEeC
Confidence            999999875

>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: ThiS
domain: Thiamin biosynthesis sulfur carrier protein ThiS
species: Escherichia coli [TaxId: 562]

Probab=93.27  E-value=0.22  Score=30.56  Aligned_cols=62  Identities=26%  Similarity=0.310  Sum_probs=47.5

Q ss_pred             cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCCC
Q 045158          181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRGG  251 (252)
Q Consensus       181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~~  251 (252)
                      ++|+.+.  ++...|+++|-+.+    +++........+++.. ......++-+++||.|.++  +..+||
T Consensus         4 vNg~~~~--~~~~~tl~~ll~~l----~~~~~~vaV~vN~~iv-pk~~~~~~~L~~gD~ieIv--~~v~GG   65 (65)
T d1zud21           4 FNDQAMQ--CAAGQTVHELLEQL----DQRQAGAALAINQQIV-PREQWAQHIVQDGDQILLF--QVIAGG   65 (65)
T ss_dssp             ETTEEEC--CCTTCBHHHHHHHH----TCCCTTEEEEETTEEC-CGGGTTTCBCCTTCEEEEE--ECCCCC
T ss_pred             ECCEEEE--cCCCCcHHHHHHHc----CCCCCcEEEEECCEEc-CHHHHhhccCCCCCEEEEE--EEecCC
Confidence            3465554  46667999888765    7888888888888654 4466778899999999999  777777

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.90  E-value=0.15  Score=33.79  Aligned_cols=64  Identities=17%  Similarity=0.155  Sum_probs=48.7

Q ss_pred             ccCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEee--cCeeec--CCccccccCCCCCCEEEEec
Q 045158          180 LLNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIH--KQRIMR--DNCSLRWHGVEYGDILYVFK  244 (252)
Q Consensus       180 ~~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~--~g~~l~--d~~tL~~y~I~~gsti~l~~  244 (252)
                      ...|+++.-.-..++||++|..-+... +.....++|..  -.+.+.  .+.||.+.|+.+..+|+|-.
T Consensus        23 lPdG~r~~r~F~~~dtl~~l~~fv~~~-~~~~~~f~l~~~~Pr~~~~~d~~~TL~e~gl~p~~~L~v~~   90 (96)
T d2cr5a1          23 CPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE   90 (96)
T ss_dssp             CTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred             CCCCCEEEEEECCcccHHHHHHHHHHh-ccCcccceeecCCCceecCccCCCcHHHCCCCCCCEEEEec
Confidence            567888888889999999999999765 33445666653  335553  46899999999999998753

>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: Molybdopterin synthase subunit MoaD
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.67  E-value=0.68  Score=29.70  Aligned_cols=34  Identities=12%  Similarity=0.130  Sum_probs=28.0

Q ss_pred             CEEEEEe--------CCeEEEEEecCCCcHHHHHHHHHHHhC
Q 045158            1 MRIIIVA--------NGHEFVLEVGLQEPVLEIKRKIEQIFN   34 (252)
Q Consensus         1 M~v~v~~--------~g~~~~l~v~~~~tV~~lK~~I~~~~~   34 (252)
                      |+|.|++        +.....+++....||.+|...+.++.+
T Consensus         2 mkI~v~~Fa~lre~~G~~~~~~~~~~~~Tv~~l~~~L~~~~~   43 (88)
T d1vjka_           2 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHE   43 (88)
T ss_dssp             EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCG
T ss_pred             eEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHCh
Confidence            7888864        345778999999999999999988753

>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Growth factor receptor-bound protein 7, GRB-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.07  E-value=0.82  Score=30.34  Aligned_cols=49  Identities=18%  Similarity=0.302  Sum_probs=37.2

Q ss_pred             cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCc-eEEe--e--cC--eeecCCccc
Q 045158          181 LNGASIPLEMQDSSTVNELRHLLLSSKILPRED-YIFI--H--KQ--RIMRDNCSL  229 (252)
Q Consensus       181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~-~~l~--~--~g--~~l~d~~tL  229 (252)
                      ..|.+..+.|++++|+.++-+.+.++.+++.+. +.|+  +  .|  |.|+|...+
T Consensus        17 ~dg~~k~l~V~~~tTa~eV~~~l~~K~~~~~~~~f~L~E~~~~~~leR~L~d~E~v   72 (100)
T d1wgra_          17 EDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESV   72 (100)
T ss_dssp             TTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCH
T ss_pred             cCCCEEEEEECCCCcHHHHHHHHHHHhCCCCCCCeEEEEecCCCcceeecCchHhH
Confidence            468899999999999999999999999987654 3222  2  12  777776533

>d1xo3a_ d.15.3.3 (A:) C9orf74 homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: C9orf74 homolog
domain: C9orf74 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.37  E-value=2.3  Score=27.99  Aligned_cols=72  Identities=11%  Similarity=0.161  Sum_probs=45.0

Q ss_pred             CCcEEEEEEeCC---------cEEEEeeCC---CccHHHHHHHHHHHhCCCCc-----------cEEEEECceecccccc
Q 045158           82 HDKIHIIIKFPS---------RKFNIDVDR---TDTVRSLKEKIHIIDGTPIK-----------RMLLFFSGIELDDEFR  138 (252)
Q Consensus        82 ~~~~~i~v~~~g---------~~~~l~v~~---~~TV~~lK~~I~~~~gip~~-----------~q~L~~~g~~L~~d~~  138 (252)
                      ..+|.|.|++.|         +...+++..   ..||.+|-+.+.++..-+..           ...+..+|...+ - .
T Consensus         2 ~~~m~V~V~F~g~L~~lf~~~r~~~v~l~~~~~~~TV~dll~~L~~~~p~~~~~l~~~~~~lr~~v~v~vN~~di~-~-l   79 (101)
T d1xo3a_           2 AAPLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWE-L-L   79 (101)
T ss_dssp             CSSCEEEEEECSSGGGGGTTCCCEEEECCSSSCCCCHHHHHHHHHHHHCCSCGGGSCCTTSCCSSEEEEETTEEHH-H-H
T ss_pred             CCCeEEEEEEechHHHHhCCcceEEEEcCCCCCCcCHHHHHHHHHHhCCcchhhhhccCcCeeeeEEEEEcCccee-c-c
Confidence            346889999744         445565543   47999999999887753211           123445555431 0 0


Q ss_pred             cccccCCCCCCEEEEEe
Q 045158          139 NLSEYGIREFSEIIVFL  155 (252)
Q Consensus       139 ~L~~y~i~~~s~i~l~~  155 (252)
                      .=-++.+++|+.|.++-
T Consensus        80 ~gl~t~l~dgDeV~~~p   96 (101)
T d1xo3a_          80 GELDYQLQDQDSILFIS   96 (101)
T ss_dssp             TTTSCCCCTTCEEEEEE
T ss_pred             CCCccCcCCCCEEEEeC
Confidence            00267899999999875

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.34  E-value=0.57  Score=30.21  Aligned_cols=43  Identities=16%  Similarity=0.136  Sum_probs=34.9

Q ss_pred             EEEEEeCCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEcC
Q 045158            2 RIIIVANGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVSG   46 (252)
Q Consensus         2 ~v~v~~~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~g   46 (252)
                      +|.+.+++..+.+.+.++.+..+|+.+|+++++..  ..+|.|..
T Consensus        14 kVKv~~~~D~~~~~l~~~it~~dL~~kI~~rf~~~--~~~lkY~D   56 (85)
T d1ip9a_          14 KIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQTKL   56 (85)
T ss_dssp             EEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEECC
T ss_pred             EEEEEECCcEEEEEeCCCCCHHHHHHHHHHHhCCC--ceEEEEEc
Confidence            34445588999999999999999999999999764  46776753

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.73  E-value=1.9  Score=27.52  Aligned_cols=47  Identities=17%  Similarity=0.135  Sum_probs=37.4

Q ss_pred             cCCcEEEEEEeCCcEEEEeeCCCccHHHHHHHHHHHhCCCCccEEEEEC
Q 045158           81 QHDKIHIIIKFPSRKFNIDVDRTDTVRSLKEKIHIIDGTPIKRMLLFFS  129 (252)
Q Consensus        81 ~~~~~~i~v~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~  129 (252)
                      ....+.|.+.+.+..+.+.+.++.|..+|+++|++++++.  ..+|.|.
T Consensus         9 ~~~~ikVKv~~~~D~~~~~l~~~it~~dL~~kI~~rf~~~--~~~lkY~   55 (85)
T d1ip9a_           9 GLKTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQTK   55 (85)
T ss_dssp             CCCCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEEC
T ss_pred             CCCCEEEEEEECCcEEEEEeCCCCCHHHHHHHHHHHhCCC--ceEEEEE
Confidence            3445666666788899999999999999999999999764  4667664

>d2cu3a1 d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: ThiS
domain: Uncharacterised protein TTHA0675
species: Thermus thermophilus [TaxId: 274]

Probab=84.29  E-value=1.6  Score=26.18  Aligned_cols=55  Identities=18%  Similarity=0.254  Sum_probs=42.2

Q ss_pred             cCCceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEe
Q 045158          181 LNGASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVF  243 (252)
Q Consensus       181 ~~g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~  243 (252)
                      ++|+.+.+  + ..|+.+|-..+    +++........+|.... .....++-+++||.|.++
T Consensus         4 vNGe~~~~--~-~~tl~~LL~~l----~~~~~~vAV~vN~~ivp-r~~~~~~~l~~gD~iEIv   58 (63)
T d2cu3a1           4 LNGEPRPL--E-GKTLKEVLEEM----GVELKGVAVLLNEEAFL-GLEVPDRPLRDGDVVEVV   58 (63)
T ss_dssp             ETTEEECC--T-TCCHHHHHHHH----TBCGGGEEEEETTEEEE-GGGCCCCCCCTTCEEEEE
T ss_pred             ECCEEEEc--C-CCCHHHHHHHc----CCCCCcEEEEECCEEcC-HHHcCcccCCCCCEEEEE
Confidence            46876654  3 46888777665    77777889999996654 456778899999999998

>d1tygb_ d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier protein ThiS {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: ThiS
domain: Thiamin biosynthesis sulfur carrier protein ThiS
species: Bacillus subtilis [TaxId: 1423]

Probab=83.39  E-value=2.5  Score=25.42  Aligned_cols=61  Identities=16%  Similarity=0.211  Sum_probs=44.4

Q ss_pred             cCCceEEEEecCC-CcHHHHHHHHhhcCCCCCCceEEeecCeeecCCccccccCCCCCCEEEEecCeecCC
Q 045158          181 LNGASIPLEMQDS-STVNELRHLLLSSKILPREDYIFIHKQRIMRDNCSLRWHGVEYGDILYVFKGTVSRG  250 (252)
Q Consensus       181 ~~g~~~~l~v~~~-~tV~~Lk~~i~~~~gip~~~~~l~~~g~~l~d~~tL~~y~I~~gsti~l~~~~~~~~  250 (252)
                      ++|+.+.+  +.. .|+++|-+.+    ++++......+++..+ ......++-+++||.|.++  +..||
T Consensus         4 vNG~~~~~--~~~~~tl~~LL~~l----~~~~~~vAVevN~~iv-~k~~~~~~~L~~gD~IEIv--~~vgG   65 (65)
T d1tygb_           4 LNGKDVKW--KKDTGTIQDLLASY----QLENKIVIVERNKEII-GKERYHEVELCDRDVIEIV--HFVGG   65 (65)
T ss_dssp             ETTEEECC--SSSCCBHHHHHHHT----TCTTSCCEEEETTEEE-CGGGTTTSBCCSSSEEEEE--EECCC
T ss_pred             ECCEEEEc--CCCcccHHHHHHHc----CCCCCcEEEEECCEEc-CHHHcCcccCCCCCEEEEE--EeecC
Confidence            45666544  333 4888886554    8888888999999654 4467888899999999998  45544

>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.52  E-value=1.9  Score=27.37  Aligned_cols=38  Identities=8%  Similarity=0.140  Sum_probs=35.3

Q ss_pred             CCeEEEEEecCCCcHHHHHHHHHHHhCCCCCceEEEEc
Q 045158            8 NGHEFVLEVGLQEPVLEIKRKIEQIFNIPATSQTLAVS   45 (252)
Q Consensus         8 ~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~~~   45 (252)
                      -.-++.+.+.++.+..+|..+|.+++..+++.-+|-|.
T Consensus        12 ~~fTVal~v~~G~~y~~L~~lvs~KL~l~~~~~~LSY~   49 (82)
T d1oeya_          12 YKYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYR   49 (82)
T ss_dssp             SSSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEEC
T ss_pred             EEEEEEEEccCCCCHHHHHHHHHHHhCCChhheEEEec
Confidence            44678899999999999999999999999999999996

>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.88  E-value=1.7  Score=27.60  Aligned_cols=37  Identities=11%  Similarity=0.103  Sum_probs=34.8

Q ss_pred             CceEEEEecCCCcHHHHHHHHhhcCCCCCCceEEeec
Q 045158          183 GASIPLEMQDSSTVNELRHLLLSSKILPREDYIFIHK  219 (252)
Q Consensus       183 g~~~~l~v~~~~tV~~Lk~~i~~~~gip~~~~~l~~~  219 (252)
                      .-|+.+++.+-....+|+++|.++..+|++.-.|.|+
T Consensus        13 ~fTVal~v~~G~~y~~L~~lvs~KL~l~~~~~~LSY~   49 (82)
T d1oeya_          13 KYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYR   49 (82)
T ss_dssp             SSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEEC
T ss_pred             EEEEEEEccCCCCHHHHHHHHHHHhCCChhheEEEec
Confidence            5788899999999999999999999999999999996