Citrus Sinensis ID: 045166

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-----
Protein Sequence
MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGCDSGEAPTNEDHTEGSEESLFSGASDWKIILTGYAGGLVAGLVLGFNFSTGIIGWILEKLGNVAKGNKEEGET
Secondary Structure (PSIPRED)
cEEEccccEEEEEccHHHHccccccEEEcccccccccccccccccccccEEEccccccEEEccccccccccccccEEEcccccccccccHHHHHccHHHHcccccccEEEEEEEcccccccccccEEEEEEEEEEEEcccEEEccccccccEEEcccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEHHHHHHHHHHHcccccHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEcccccccccccHHHHccccccEEEcccccccccccHHHHcccccEEEEEcccccccccccccccccccccEEEEcccccccccccHHHHHcccccEEEEcccccccccccccHccccccEEEEEEccccccccccccHHHccccccEEEEcccccccccccHHHHEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEcccccccccccccccccccccccccccccccccEEEEEEEcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mfylrnenTFLQRiprslincskleflglginqisdtfpswlgtlpklnvLILRSNIFygiieeprtscgfsklriidlsdnrftgklpsnsflCWNAMKIVNTSALRYLQDVlfpygqvssnvlgtydysrtmnskgrvmtynkiPNILAGIilsnnrfdgaipasianlkglqfsgripQQLAELTFLAFFnvsdnyltgpipqgkqfatfdntsfdgnsglcgkplskgcdsgeaptnedhtegseeslfsgasDWKIILTGYAGGLVAGLVLGFNFSTGIIGWILEKLgnvakgnkeeget
Flexible Loop (DISEMBL)
mfylrnentflqripRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIeeprtscgfSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGCDSGEAPTNEDHTEGSEESLFSGASDWKIILTGYAGGLVAGLVLGFNFSTGIIGWILEklgnvakgnkeeget
Low Complexity Region (SEG)
MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGCDSGEAPTNEDHTEGSEESLFSGASDWKIILTGYagglvaglvlgFNFSTGIIGWILEKLGNVAKGNKEEGET
Disordered region (IsUnstruct)
**YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSF************************************GASDWKIILTGYAGGLVAGLVLGFNFSTGIIGWILEKLGNV**********
Disordered Region (DISOPRED)
MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNT**LRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPL**************************ASDWKIILTGYAGGLVAGLVLGFNFSTGIIGWILEKLGN***********
Disordered Region (DISEMBL)
MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSK*********************FSGASDWKIILTGYAGGLVAGLVLGFNFSTGIIGWILEKLGNVA*********
Disordered Region (DISPRO)
MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGC*********************GASDWKIILTGYAGGLVAGLVLGFNFSTGIIGWILEKLGNVAKG*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGCDSGEAPTNEDHTEGSEESLFSGASDWKIILTGYAGGLVAGLVLGFNFSTGIIGWILEKLGNVAKGNKEEGET
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	305	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.872	0.314	0.352	6e-40
Q9C7S5	1095	Tyrosine-sulfated glycope	no	no	0.662	0.184	0.336	2e-23
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.744	0.189	0.295	1e-20
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.662	0.197	0.320	4e-20
Q9SHI3	729	Receptor-like protein 2 O	no	no	0.668	0.279	0.331	5e-20
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.895	0.238	0.270	7e-19
Q9FN37	1036	Phytosulfokine receptor 2	no	no	0.714	0.210	0.329	4e-18
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.704	0.172	0.299	3e-16
Q9LJF3	1164	Receptor-like protein kin	no	no	0.813	0.213	0.283	4e-16
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.740	0.193	0.287	5e-16

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  164 bits (416), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 112/318 (35%), Positives = 157/318 (49%), Gaps = 52/318 (16%)

Query: 13  RIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFS 72
           + P+SLINC  LE + +  N+I D FPSWL +LP L+VL LRSN FYG +     S GF 
Sbjct: 531 KFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFYGPLYHRHASIGFQ 590

Query: 73  KLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSR 132
            LRIID+S N F+G LP   F  W  M  +     +Y+ +  + Y         +Y +  
Sbjct: 591 SLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTE-FWRYAD-------SYYHEM 642

Query: 133 TMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGL------------------ 174
            M +KG  M++ +I      I  S N+ +G IP S+  LK L                  
Sbjct: 643 EMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFL 702

Query: 175 --------------QFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDG 220
                         + SG+IPQ LA L+FL++ N S N L GP+P+G QF     +SF  
Sbjct: 703 ANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQKCSSFLD 762

Query: 221 NSGLCGKPLSKGC-DSGEA-PTN---EDHTEGSEESLFSGASDWKIILTGYAGGLVAGLV 275
           N GL G  L   C D+G   PT+   ED +E +EE++F    +W      Y  G++ GLV
Sbjct: 763 NPGLYG--LEDICRDTGALNPTSQLPEDLSE-AEENMF----NWVAAAIAYGPGVLCGLV 815

Query: 276 LGFNFSTGIIGWILEKLG 293
           +G  +++    W  EK G
Sbjct: 816 IGHFYTSHNHEWFTEKFG 833

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7S5|PSYR1_ARATH Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1

 Score =  110 bits (274), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/250 (33%), Positives = 113/250 (45%), Gaps = 48/250 (19%)

Query: 13  RIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFS 72
            IP  LI   ++E + L +N+   T P WLGTLP L         FY             
Sbjct: 486 EIPAWLIKLQRVEVMDLSMNRFVGTIPGWLGTLPDL---------FY------------- 523

Query: 73  KLRIIDLSDNRFTGKLPSNSFLCWNAM--KIVNTSALRYLQDVLF----------PYGQV 120
               +DLSDN  TG+LP   F     M  K  + +   YL+  +F           Y Q+
Sbjct: 524 ----LDLSDNFLTGELPKELFQLRALMSQKAYDATERNYLELPVFVNPNNVTTNQQYNQL 579

Query: 121 SSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ----- 175
           SS  L    Y +  N  G +        +L  + L  N F G+IP  ++NL  L+     
Sbjct: 580 SS--LPPTIYIKRNNLTGTIPVEVGQLKVLHILELLGNNFSGSIPDELSNLTNLERLDLS 637

Query: 176 ---FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKG 232
               SGRIP  L  L FL++FNV++N L+GPIP G QF TF   +F+GN  LCG  L   
Sbjct: 638 NNNLSGRIPWSLTGLHFLSYFNVANNTLSGPIPTGTQFDTFPKANFEGNPLLCGGVLLTS 697

Query: 233 CDSGEAPTNE 242
           CD  +  T +
Sbjct: 698 CDPTQHSTTK 707

Tyrosine-sulfated glycopeptide receptor with a serine/threonine-protein kinase activity. Regulates, in response to tyrosine-sulfated glycopeptide binding, a signaling cascade involved in cellular proliferation and plant growth. Not involved in PSK perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  100 bits (249), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 125/288 (43%), Gaps = 61/288 (21%)

Query: 8   NTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRT 67
           N     IP  L NC+ L ++ L  N+++   P W+G L  L +L L +N F G I     
Sbjct: 498 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 557

Query: 68  SCGFSKLRIIDLSDNRFTGKLPSNSFL--------------------------CWNAMKI 101
            C    L  +DL+ N F G +P+  F                           C  A  +
Sbjct: 558 DC--RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 615

Query: 102 VNTSALRYLQ----DVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGII--- 154
           +    +R  Q        P   ++S V G +  S T ++ G +M  +   N+L+G I   
Sbjct: 616 LEFQGIRSEQLNRLSTRNPC-NITSRVYGGH-TSPTFDNNGSMMFLDMSYNMLSGYIPKE 673

Query: 155 -----------LSNNRFDGAIPASIANLKGL--------QFSGRIPQQLAELTFLAFFNV 195
                      L +N   G+IP  + +L+GL        +  GRIPQ ++ LT L   ++
Sbjct: 674 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 733

Query: 196 SDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGCDSGEAPTNED 243
           S+N L+GPIP+  QF TF    F  N GLCG PL + CD    P+N D
Sbjct: 734 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR-CD----PSNAD 776

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score = 99.0 bits (245), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 112/240 (46%), Gaps = 38/240 (15%)

Query: 14  IPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSK 73
           +P+ L N   L+ L L  NQ+S T P WLG+L  L  L L +N F G I    TS     
Sbjct: 441 VPQWLSNSPSLQLLDLSWNQLSGTIPPWLGSLNSLFYLDLSNNTFIGEIPHSLTS----- 495

Query: 74  LRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFP------YGQVSSNVLGT 127
           L+ +   +N      P   F      K  N   L+Y Q   FP      Y  ++ ++   
Sbjct: 496 LQSLVSKENAVEEPSPDFPFF---KKKNTNAGGLQYNQPSSFPPMIDLSYNSLNGSIWPE 552

Query: 128 YDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ--------FSGR 179
           +   R ++                 + L NN   G IPA+++ +  L+         SG 
Sbjct: 553 FGDLRQLHV----------------LNLKNNNLSGNIPANLSGMTSLEVLDLSHNNLSGN 596

Query: 180 IPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGCDSGEAP 239
           IP  L +L+FL+ F+V+ N L+GPIP G QF TF N+SF+GN GLCG+  S    + ++P
Sbjct: 597 IPPSLVKLSFLSTFSVAYNKLSGPIPTGVQFQTFPNSSFEGNQGLCGEHASPCHITDQSP 656

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI3|RLP2_ARATH Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/247 (33%), Positives = 110/247 (44%), Gaps = 43/247 (17%)

Query: 13  RIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFS 72
            IP  LIN +K+E + L +N+   + P WLGTLP L         FY             
Sbjct: 484 EIPAWLINLNKVEVMDLSMNRFVGSIPGWLGTLPDL---------FY------------- 521

Query: 73  KLRIIDLSDNRFTGKLPSNSFLCWNAM--KIVNTSALRYLQDVLFPYGQVSS---NVLGT 127
               +DLSDN  TG+LP   F     M  KI   + L  L   L P    ++   N L +
Sbjct: 522 ----LDLSDNLLTGELPKELFQLRALMSQKITENNYLE-LPIFLNPNNVTTNQQYNKLYS 576

Query: 128 YD---YSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ--------F 176
           +    Y R  N  G +        +L  + L  N   G+IP  ++NL  L+         
Sbjct: 577 FPPTIYIRRNNLTGSIPVEVGQLKVLHILELLGNNLSGSIPDELSNLTNLERLDLSNNNL 636

Query: 177 SGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGCDSG 236
           SG IP  L  L FL++FNV++N L GPIP   QF TF   +F+GN  LCG  L   C   
Sbjct: 637 SGSIPWSLTNLNFLSYFNVANNSLEGPIPSEGQFDTFPKANFEGNPLLCGGVLLTSCKPT 696

Query: 237 EAPTNED 243
            A  N++
Sbjct: 697 RAKENDE 703

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score = 94.7 bits (234), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 141/333 (42%), Gaps = 60/333 (18%)

Query: 6   NENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEP 65
           N N     IP    NCS +E++    N+++   P   G L +L VL L +N F G I   
Sbjct: 455 NNNQLTGEIPPEFFNCSNIEWVSFTSNRLTGEVPKDFGILSRLAVLQLGNNNFTGEIPPE 514

Query: 66  RTSCGFSKLRIIDLSDNRFTGKLPS-----------NSFLCWNAMK-------------- 100
              C  + L  +DL+ N  TG++P            +  L  N M               
Sbjct: 515 LGKC--TTLVWLDLNTNHLTGEIPPRLGRQPGSKALSGLLSGNTMAFVRNVGNSCKGVGG 572

Query: 101 IVNTSALRYLQDVLFPYGQVSSNVLGTYD------YSRTMNSKGRVMTYN----KIPNIL 150
           +V  S +R  + +  P  + S +    Y       ++R    +   ++YN    KIP+ +
Sbjct: 573 LVEFSGIRPERLLQIPSLK-SCDFTRMYSGPILSLFTRYQTIEYLDLSYNQLRGKIPDEI 631

Query: 151 AGII------LSNNRFDGAIPASIANLKGL--------QFSGRIPQQLAELTFLAFFNVS 196
             +I      LS+N+  G IP +I  LK L        +  G+IP+  + L+FL   ++S
Sbjct: 632 GEMIALQVLELSHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQIPESFSNLSFLVQIDLS 691

Query: 197 DNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGCDSGEAPTNEDHTEGSEESLFSGA 256
           +N LTGPIPQ  Q +T   T +  N GLCG PL + C +G         EG      + A
Sbjct: 692 NNELTGPIPQRGQLSTLPATQYANNPGLCGVPLPE-CKNGNNQLPAGTEEGKRAKHGTRA 750

Query: 257 SDWKIILTGYAGGLVAGLVLGFNFSTGIIGWIL 289
           + W       A  +V G+++       +I W +
Sbjct: 751 ASW-------ANSIVLGVLISAASVCILIVWAI 776

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FN37|PSKR2_ARATH Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 107/243 (44%), Gaps = 25/243 (10%)

Query: 12  QRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGF 71
           + IP ++     L  L LG   +    PSWL    KL VL L  N FYG I  P      
Sbjct: 416 EEIPNNVTGFDNLAILALGNCGLRGQIPSWLLNCKKLEVLDLSWNHFYGTI--PHWIGKM 473

Query: 72  SKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSAL------------RYLQDVLFPYGQ 119
             L  ID S+N  TG +P       N +++  T++             R       PY Q
Sbjct: 474 ESLFYIDFSNNTLTGAIPVAITELKNLIRLNGTASQMTDSSGIPLYVKRNKSSNGLPYNQ 533

Query: 120 VSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ---- 175
           VS      Y  +  +N  G ++        L  + LS N F G IP SI+ L  L+    
Sbjct: 534 VSRFPPSIYLNNNRLN--GTILPEIGRLKELHMLDLSRNNFTGTIPDSISGLDNLEVLDL 591

Query: 176 ----FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSK 231
                 G IP     LTFL+ F+V+ N LTG IP G QF +F ++SF+GN GLC + +  
Sbjct: 592 SYNHLYGSIPLSFQSLTFLSRFSVAYNRLTGAIPSGGQFYSFPHSSFEGNLGLC-RAIDS 650

Query: 232 GCD 234
            CD
Sbjct: 651 PCD 653

Phytosulfokine receptor with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 111/234 (47%), Gaps = 19/234 (8%)

Query: 8   NTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRT 67
           N     IP  L+ C KL  + L  N +S   P WLG L +L  L L SN F   +     
Sbjct: 633 NALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELF 692

Query: 68  SCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGT 127
           +C  +KL ++ L  N   G +P        A+ ++N    ++   +    G++S      
Sbjct: 693 NC--TKLLVLSLDGNSLNGSIPQ-EIGNLGALNVLNLDKNQFSGSLPQAMGKLSK----L 745

Query: 128 YDYSRTMNS-KGRV-MTYNKIPNILAGIILSNNRFDGAIPASIANLKGL--------QFS 177
           Y+   + NS  G + +   ++ ++ + + LS N F G IP++I  L  L        Q +
Sbjct: 746 YELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLT 805

Query: 178 GRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSK 231
           G +P  + ++  L + NVS N L G +   KQF+ +   SF GN+GLCG PLS+
Sbjct: 806 GEVPGSVGDMKSLGYLNVSFNNLGGKLK--KQFSRWPADSFLGNTGLCGSPLSR 857

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 120/300 (40%), Gaps = 52/300 (17%)

Query: 6   NENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEP 65
           N N     +P S+  C+ + ++ L  N ++   P  +G L KL +L L +N   G I   
Sbjct: 483 NNNLLTGSLPESISKCTNMLWISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLTGNIPSE 542

Query: 66  RTSCGFSKLRIIDLSDNRFTGKLPSN------------------SFL-------CWNAMK 100
             +C    L  +DL+ N  TG LP                    +F+       C  A  
Sbjct: 543 LGNC--KNLIWLDLNSNNLTGNLPGELASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAGG 600

Query: 101 IVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIP-NILAGII----- 154
           +V    +R  +   FP              +  M S    M Y  +  N ++G I     
Sbjct: 601 LVEFEGIRAERLEHFPMVHSCPKTRIYSGMTMYMFSSNGSMIYLDLSYNAVSGSIPLGYG 660

Query: 155 ---------LSNNRFDGAIPASIANLKGL--------QFSGRIPQQLAELTFLAFFNVSD 197
                    L +N   G IP S   LK +           G +P  L  L+FL+  +VS+
Sbjct: 661 AMGYLQVLNLGHNLLTGTIPDSFGGLKAIGVLDLSHNDLQGFLPGSLGGLSFLSDLDVSN 720

Query: 198 NYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGCDSGEAPTNEDHTEGSEESLFSGAS 257
           N LTGPIP G Q  TF  T +  NSGLCG PL   C SG  PT   H    ++S+ +G S
Sbjct: 721 NNLTGPIPFGGQLTTFPLTRYANNSGLCGVPLPP-CSSGSRPT-RSHAHPKKQSIATGMS 778

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 121/285 (42%), Gaps = 59/285 (20%)

Query: 6   NENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEP 65
           N N     IP S+  C+ + ++ L  N+++   PS +G L KL +L L +N   G +  P
Sbjct: 483 NNNLLTGSIPESISRCTNMIWISLSSNRLTGKIPSGIGNLSKLAILQLGNNSLSGNV--P 540

Query: 66  RTSCGFSKLRIIDLSDNRFTGKLPSN------------------SFL-------CWNAMK 100
           R       L  +DL+ N  TG LP                    +F+       C  A  
Sbjct: 541 RQLGNCKSLIWLDLNSNNLTGDLPGELASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAGG 600

Query: 101 IVNTSALRYLQDVLFPYGQVSSNVLGTYDYS----RTMNSKGRVMTYNKIPNILAGII-- 154
           +V    +R  +    P   +  +   T  YS     T ++ G ++ ++   N ++G I  
Sbjct: 601 LVEFEGIRAERLERLP---MVHSCPATRIYSGMTMYTFSANGSMIYFDISYNAVSGFIPP 657

Query: 155 ------------LSNNRFDGAIPASIANLKGL--------QFSGRIPQQLAELTFLAFFN 194
                       L +NR  G IP S   LK +           G +P  L  L+FL+  +
Sbjct: 658 GYGNMGYLQVLNLGHNRITGTIPDSFGGLKAIGVLDLSHNNLQGYLPGSLGSLSFLSDLD 717

Query: 195 VSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGCDSGEAP 239
           VS+N LTGPIP G Q  TF  + +  NSGLCG PL + C  G AP
Sbjct: 718 VSNNNLTGPIPFGGQLTTFPVSRYANNSGLCGVPL-RPC--GSAP 759

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
359485824	973	PREDICTED: receptor-like protein 12-like	0.954	0.299	0.456	2e-66
359485822	993	PREDICTED: receptor-like protein 12-like	0.921	0.282	0.464	9e-65
255548694	984	serine/threonine-protein kinase bri1, pu	0.908	0.281	0.454	1e-64
147866761	859	hypothetical protein VITISV_021527 [Viti	0.947	0.336	0.457	2e-63
359490156	886	PREDICTED: receptor-like protein 12-like	0.937	0.322	0.446	1e-62
224140509	961	predicted protein [Populus trichocarpa]	0.888	0.281	0.456	4e-62
224140517	979	predicted protein [Populus trichocarpa]	0.911	0.283	0.435	4e-62
147782974	1719	hypothetical protein VITISV_036826 [Viti	0.914	0.162	0.450	7e-62
225447578	1946	PREDICTED: uncharacterized protein LOC10	0.921	0.144	0.433	4e-61
147794486	1924	hypothetical protein VITISV_000631 [Viti	0.921	0.146	0.433	1e-60

>gi|359485824|ref|XP_003633343.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 153/335 (45%), Positives = 193/335 (57%), Gaps = 44/335 (13%)

Query: 7   ENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPR 66
           +N F  +IPRSL+NC+ LE L LG N+I+D FP WLG LP+L VLILRSN F+G I    
Sbjct: 642 DNQFQGQIPRSLVNCTMLEHLVLGNNKINDIFPFWLGALPQLQVLILRSNRFHGAIGSWH 701

Query: 67  TSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVN-TSALRYLQDVLFPYGQVSSNVL 125
           T+  F KLRIIDLSDN F G LPS  F  W+AMK+ +  S LRY+Q  + P   + +NV+
Sbjct: 702 TNFRFPKLRIIDLSDNEFIGDLPSEYFQNWDAMKLTDIASGLRYMQ--ISPMIDLKNNVM 759

Query: 126 GT-YDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGL---------- 174
            T Y YS TM +KG    Y +I +    I  S N F G IP SI +LKG+          
Sbjct: 760 ITGYMYSMTMTNKGMQRFYERILDTFMAIDFSGNNFKGQIPTSIGSLKGIHLLNLGGNDL 819

Query: 175 ----------------------QFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFAT 212
                                 + SG IP QL  LTFL FFNVS N+LTG IPQGKQFAT
Sbjct: 820 TGHIPSSLGNLTQLESLDLSQNKLSGEIPWQLTRLTFLEFFNVSHNHLTGHIPQGKQFAT 879

Query: 213 FDNTSFDGNSGLCGKPLSKGCDSGEA--PTNEDHTEGSEESLFSGASDWKIILTGYAGGL 270
           F+N SFDGN GLCG PLS+ C S EA  PT+    +GS         DWKI+L GY  GL
Sbjct: 880 FENASFDGNLGLCGSPLSRECGSSEALPPTSSSSKQGSTTKF-----DWKIVLMGYGSGL 934

Query: 271 VAGLVLGFNFSTGIIGWILEKLGNVA-KGNKEEGE 304
           + G+ +G+  ++    W ++ +G    K  ++EG 
Sbjct: 935 LIGVSIGYCLTSWKHEWFVKTIGKRQRKWTRKEGR 969

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485822|ref|XP_003633342.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  253 bits (645), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 150/323 (46%), Positives = 182/323 (56%), Gaps = 42/323 (13%)

Query: 6   NENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEP 65
           +EN    +IP+SL +C  LE L LG N I+D FP WLG+LP+L VLILR N F+G I  P
Sbjct: 662 SENQLQGQIPKSLASCMMLEELVLGNNLINDIFPFWLGSLPRLQVLILRFNRFHGAIGSP 721

Query: 66  RTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQ-DVLFPYGQVSSNV 124
           +T+  FSKLRIIDLS N FTG LPS     W+AM+IV+   L Y+Q D  F   Q S   
Sbjct: 722 KTNFEFSKLRIIDLSYNGFTGNLPSEYLKNWDAMRIVDAENLTYIQVDEEFEVPQYSWE- 780

Query: 125 LGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQF-------- 176
              Y +S TM +KG    Y  IP+IL  I LS+NRF G IP SI N  GL++        
Sbjct: 781 -EPYPFSTTMTNKGMTREYELIPDILIAIDLSSNRFHGEIPESIGNPNGLRWLNLSNNAL 839

Query: 177 ------------------------SGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFAT 212
                                   S  IPQQL +LTFLAFFNVS N+LTGPIPQGKQFAT
Sbjct: 840 IGAIPTSLANLTLLEALDLSQNKLSREIPQQLVQLTFLAFFNVSHNHLTGPIPQGKQFAT 899

Query: 213 FDNTSFDGNSGLCGKPLSKGCDSGEA--PTNEDHTEGSEESLFSGASDWKIILTGYAGGL 270
           F   SFDGN GLCG PLS+ C S E   PT     +GS         DWK +L G   GL
Sbjct: 900 FSRASFDGNPGLCGSPLSRACGSSEQSPPTPSSSKQGSTSEF-----DWKFVLMGCGSGL 954

Query: 271 VAGLVLGFNFSTGIIGWILEKLG 293
           V G+ +G+  ++    W ++  G
Sbjct: 955 VIGVSIGYCLTSWKHEWFVKTFG 977

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548694|ref|XP_002515403.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223545347|gb|EEF46852.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 145/319 (45%), Positives = 186/319 (58%), Gaps = 42/319 (13%)

Query: 13  RIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFS 72
           ++PRSL NC+KLE L LG NQI D FPSW G LP+L VLILRSN   G++ +P T+  F 
Sbjct: 656 KLPRSLANCTKLEMLNLGNNQIYDVFPSWAGLLPQLRVLILRSNRLVGVVGKPETNFDFP 715

Query: 73  KLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQ-DVLFPYGQVSSNVLGTYDYS 131
           +L+IIDLSDN FTG+LP   F  W AMK ++   L+Y++ D+ F     S +    + YS
Sbjct: 716 QLQIIDLSDNTFTGELPFEYFQKWTAMKSIDQDQLKYIEVDISFQVLDYSWS--NHFSYS 773

Query: 132 RTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGL----------------- 174
            T+ +KGR  TY +I    A I  S+NRF+G IP  I NL+ +                 
Sbjct: 774 ITITNKGRETTYERILKFFAVINFSSNRFEGRIPEVIGNLREVQLLNLSNNILTGQIPPS 833

Query: 175 ---------------QFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFD 219
                          Q SG IP +LA+L+FLAFFNVSDN LTGP+P+G QF TF+N SFD
Sbjct: 834 LGSMKELEALDLSRNQLSGEIPMKLAQLSFLAFFNVSDNNLTGPVPRGNQFDTFENNSFD 893

Query: 220 GNSGLCGKPLSKGCDSGE----APTNEDHTEGSEESLFSGASDWKIILTGYAGGLVAGLV 275
            N GLCG PLSK C   E    AP+N +  +GSE  L  G   WK++L GYA GLV G+V
Sbjct: 894 ANPGLCGNPLSKKCGFSEASTLAPSNFEQDQGSEFPLEFG---WKVVLFGYASGLVIGVV 950

Query: 276 LGFNFSTGIIGWILEKLGN 294
           +G    T    W++    N
Sbjct: 951 IGCILDTEKNEWLVNTFAN 969

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866761|emb|CAN80989.1| hypothetical protein VITISV_021527 [Vitis vinifera]

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 151/330 (45%), Positives = 182/330 (55%), Gaps = 41/330 (12%)

Query: 6   NENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEP 65
           +EN F  +IP SL NC+ LE L LG NQI D FP WLG LP+L VLILRSN F+G I   
Sbjct: 374 SENQFQGQIPISLANCTMLEQLVLGNNQIHDIFPFWLGALPQLQVLILRSNRFHGAIGSW 433

Query: 66  RTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQ-DVLFPYGQVSSNV 124
            T+  F KLRIIDLSDN F G LPS     W+AMK+   + L+ +Q +  F     +   
Sbjct: 434 HTNFRFPKLRIIDLSDNEFIGDLPSVYXQNWDAMKLAXANHLKVMQANQTFQSPGYTQTF 493

Query: 125 LGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGL---------- 174
              Y YS TM +KG    Y +IP+    I  S N F G IP SI NLKGL          
Sbjct: 494 --KYIYSMTMTNKGMQRFYQEIPDTFIAIDFSGNNFKGQIPTSIGNLKGLHLLNLGRNNI 551

Query: 175 ----------------------QFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFAT 212
                                 + SG IP QL  +TFLAFFNVS+N+LTGPIPQGKQFAT
Sbjct: 552 TGHIPSSLMNLTQMESLDLSQNKLSGEIPWQLTRMTFLAFFNVSNNHLTGPIPQGKQFAT 611

Query: 213 FDNTSFDGNSGLCGKPLSKGCDSGEA-PTNEDHTEGSEESLFSGASDWKIILTGYAGGLV 271
           F NTSFDGN GLCG PLS+ C S EA P+    ++    S F    DWK +L GY  GLV
Sbjct: 612 FPNTSFDGNPGLCGSPLSRACGSSEASPSTPSSSKQGSTSEF----DWKFVLMGYGSGLV 667

Query: 272 AGLVLGFNFSTGIIGWILEKLGNVAKGNKE 301
            G+ +G+  ++    W   KL  +   N E
Sbjct: 668 IGVSIGYCLTSWKHKW-FPKLRIIYLSNNE 696

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490156|ref|XP_003634044.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 145/325 (44%), Positives = 176/325 (54%), Gaps = 39/325 (12%)

Query: 7   ENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPR 66
           EN F  +IPRS  NC  LE L LG NQI D FP WLG LP+L VLILRSN F+G I    
Sbjct: 556 ENQFQGQIPRSFANCMMLEHLVLGNNQIDDIFPFWLGALPQLQVLILRSNRFHGAIGSWH 615

Query: 67  TSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTS-ALRYLQDVLFPYGQVSS-NV 124
           ++  F KLRI+DLSDN+F G LPS  F  W+AMK+ + +  LRY+Q    P  Q+     
Sbjct: 616 SNFRFPKLRIVDLSDNKFIGDLPSEYFQNWDAMKLTDIANDLRYMQAR--PKFQIPGYGW 673

Query: 125 LGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGL---------- 174
              Y YS TM ++G    Y KIP++   I  S N F G IP SI NL G           
Sbjct: 674 TAHYMYSMTMTNRGMQRFYEKIPDVFIAIDFSGNNFKGQIPTSIGNLNGFHLLNLGSNNL 733

Query: 175 ----------------------QFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFAT 212
                                 Q SG IP QL  +TFLAFFNVS N+LTGPIPQG QF T
Sbjct: 734 TGHIPSSLGDLTQLESLDLSQNQLSGEIPLQLTRITFLAFFNVSHNHLTGPIPQGNQFTT 793

Query: 213 FDNTSFDGNSGLCGKPLSKGCDSGEAPTNEDHTEGSEESLFSGASDWKIILTGYAGGLVA 272
           F N SFDGN GLCG PLS+ C S EA      T  S +   +   DWK +L GY  GLV 
Sbjct: 794 FPNASFDGNLGLCGSPLSRACGSSEA---SPPTSSSSKQGSTSEFDWKFVLMGYGSGLVI 850

Query: 273 GLVLGFNFSTGIIGWILEKLGNVAK 297
           G+ +G+  ++    W ++  G   +
Sbjct: 851 GVSIGYYLTSWKHEWFVKTFGKRQR 875

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140509|ref|XP_002323625.1| predicted protein [Populus trichocarpa] gi|222868255|gb|EEF05386.1| predicted protein [Populus trichocarpa]

 Score =  244 bits (622), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 147/322 (45%), Positives = 185/322 (57%), Gaps = 51/322 (15%)

Query: 6   NENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEP 65
           ++N    +IP+SL NC+KLE L +  N+I+D FPSWLG LPKL VLILRSN  +G+I +P
Sbjct: 629 SQNQLEGKIPKSLANCTKLEILNIEQNKITDVFPSWLGILPKLRVLILRSNRLHGVIGKP 688

Query: 66  RTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDV----LFPYGQVS 121
           + +  F +L+I+DLS N F G LP   F  W+AMK +      Y+Q V    L  YG   
Sbjct: 689 KANFEFQRLQIVDLSGNCFLGNLPLEYFRNWSAMKTIYKERPLYMQVVSSFQLPRYGMTY 748

Query: 122 SNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGA------------------ 163
                 +DYS TM +KG +  Y KI   L  I LS+NRF+G                   
Sbjct: 749 H-----FDYSMTMTNKGVMTLYEKIQEFLTAIDLSSNRFEGGIPDALGDLKELYLLNLSN 803

Query: 164 ------IPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQ 209
                 IP S++NLKGL+         SG IP QLA+LTFLA FNVS N L+GPIP+G Q
Sbjct: 804 NFLTGRIPPSLSNLKGLEALDLSQNKLSGEIPVQLAQLTFLAVFNVSHNLLSGPIPRGNQ 863

Query: 210 FATFDNTSFDGNSGLCGKPLSKGCDSGE----APTNEDHTEGSEESLFSGASDWKIILTG 265
           F TFD+TSFD +SGLCGKPLSK C SGE    AP  +   EGS   L  G   W +++ G
Sbjct: 864 FETFDSTSFDADSGLCGKPLSKKCGSGEDSLPAPKED---EGSGSPLEFG---WTVVVIG 917

Query: 266 YAGGLVAGLVLGFNFSTGIIGW 287
           YA GLV G +LG   +T    W
Sbjct: 918 YASGLVTGAILGCVMNTRKYEW 939

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140517|ref|XP_002323629.1| predicted protein [Populus trichocarpa] gi|222868259|gb|EEF05390.1| predicted protein [Populus trichocarpa]

 Score =  244 bits (622), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 139/319 (43%), Positives = 184/319 (57%), Gaps = 41/319 (12%)

Query: 7   ENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPR 66
           +N    +IP+SL NC++LE L L  N I+D FPSWLG LP L V+ILRSN  +G+I +P 
Sbjct: 658 QNKLEGKIPKSLANCTELEILNLEQNNINDVFPSWLGVLPDLRVMILRSNGLHGVIGKPE 717

Query: 67  TSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLG 126
           T+  F +L+I+DLS+N F GKLP   F  W AMK V    L Y+Q     +    + +  
Sbjct: 718 TNVEFPRLQIVDLSNNSFKGKLPLEYFRNWTAMKNVRNEDLIYMQ-ANTSFLTSHNTMEK 776

Query: 127 TYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGL------------ 174
            Y+YS TM +KG +  Y KI + L  I LS+N F+G IP  + +LK L            
Sbjct: 777 QYEYSMTMTNKGVMRLYEKIQDSLTAIDLSSNGFEGGIPEVLGDLKALHLLNLSNNFLSG 836

Query: 175 --------------------QFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFD 214
                               + SG IP QLA+LTFLA FNVS N+L+G IP+G QF TFD
Sbjct: 837 GIPPSLSNLKELEALDLSHNKLSGEIPVQLAQLTFLAVFNVSHNFLSGRIPRGNQFETFD 896

Query: 215 NTSFDGNSGLCGKPLSKGCDSGEAPTNEDHTEGSEESLFSGA---SDWKIILTGYAGGLV 271
           NTSFD N GLCG+PLSK C +G     ED    ++E   SG+   S WK+++ GYA GLV
Sbjct: 897 NTSFDANPGLCGEPLSKECGNG-----EDSLPAAKEDEGSGSPPESRWKVVVIGYASGLV 951

Query: 272 AGLVLGFNFSTGIIGWILE 290
            G++LG   +T    W++E
Sbjct: 952 IGVILGCAMNTRKYEWLVE 970

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782974|emb|CAN66148.1| hypothetical protein VITISV_036826 [Vitis vinifera]

 Score =  243 bits (620), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 141/313 (45%), Positives = 177/313 (56%), Gaps = 34/313 (10%)

Query: 14   IPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSK 73
            +PRSL NC+ LE L LG NQISDTFP WLG LP+L VLILRSN F+G I +PRT+  F K
Sbjct: 1399 VPRSLTNCTVLESLNLGNNQISDTFPFWLGALPELQVLILRSNRFHGAIGKPRTNFEFPK 1458

Query: 74   LRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRT 133
            LRIIDLS N F+G LPS  FL W AMK ++     Y+Q     +   +  +   Y YS T
Sbjct: 1459 LRIIDLSYNSFSGNLPSVYFLDWIAMKSIDADNFTYMQ-ASSGFSTQTYKLYDNYTYSMT 1517

Query: 134  MNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ---FS------------- 177
            M +KG    Y KIP I   I  S+N+F G IP SI  LKGL    FS             
Sbjct: 1518 MTNKGMERVYEKIPGIFRAIDFSSNKFKGEIPTSIGTLKGLHLLNFSXNSLTGRIPTSLR 1577

Query: 178  ----------------GRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGN 221
                            G IPQQL E+TFL FFNVS N LTGPIPQ KQF TF + S++GN
Sbjct: 1578 NLTELEALDLSQNNLLGEIPQQLTEMTFLGFFNVSHNNLTGPIPQXKQFDTFQSDSYEGN 1637

Query: 222  SGLCGKPLSKGCDSGEAPTNEDHTEGSEESLFSGAS-DWKIILTGYAGGLVAGLVLGFNF 280
             GLCG PL + C + +  + +  T    + L   +  D K++L GY   LV G+++G+ F
Sbjct: 1638 PGLCGNPLIRKCGNPKQASPQPSTSEQGQDLEPASXFDRKVVLMGYXSXLVFGVIIGYIF 1697

Query: 281  STGIIGWILEKLG 293
            +T    W ++  G
Sbjct: 1698 TTRKHEWFVKTFG 1710

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447578|ref|XP_002270154.1| PREDICTED: uncharacterized protein LOC100264911 [Vitis vinifera]

 Score =  241 bits (614), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 136/314 (43%), Positives = 172/314 (54%), Gaps = 33/314 (10%)

Query: 13   RIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFS 72
            +IPRSL NC +LE L LG NQI+DTFP WLG+ P+L +LILR N F+G IE PR +  F 
Sbjct: 1627 QIPRSLGNCKELEILNLGNNQINDTFPFWLGSFPELQLLILRHNRFHGAIENPRANFEFP 1686

Query: 73   KLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSR 132
             L IIDLS N F G LP+  FL W AM  V+     Y+Q +       +  +   Y+YS 
Sbjct: 1687 TLCIIDLSYNNFAGNLPAGYFLTWVAMSRVDEENFSYMQSMTGFVLIRTYRLYENYNYSM 1746

Query: 133  TMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ----------------- 175
            TM +KG    Y KIP     I LS+N+F G IP SI  L+GL                  
Sbjct: 1747 TMTNKGMERVYPKIPRSFKAIDLSSNKFIGEIPKSIGKLRGLHLLNISSNSLTGHIPSFL 1806

Query: 176  ---------------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDG 220
                            SG IPQQL  +TFL FFNVS N+L GPIPQGKQF TF N S++G
Sbjct: 1807 GNLAQLEALDLSQNNLSGEIPQQLKGMTFLEFFNVSHNHLMGPIPQGKQFNTFQNDSYEG 1866

Query: 221  NSGLCGKPLSKGCDSGEAPTNEDHTEGSEESLFSGAS-DWKIILTGYAGGLVAGLVLGFN 279
            N GLCG PLSK C++ ++      T+     L SG   +  I+L GY  GLV G+ +G+ 
Sbjct: 1867 NPGLCGNPLSKECENSKSTAPPPPTDKHGGDLESGRKVELMIVLMGYGSGLVVGMAIGYT 1926

Query: 280  FSTGIIGWILEKLG 293
             +T    W ++  G
Sbjct: 1927 LTTRKHEWFVKTFG 1940

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147794486|emb|CAN71611.1| hypothetical protein VITISV_000631 [Vitis vinifera]

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 136/314 (43%), Positives = 171/314 (54%), Gaps = 33/314 (10%)

Query: 13   RIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFS 72
            +IPRSL NC + E L LG NQI+DTFP WLG+LP+L +LILR N F+G IE PR +  F 
Sbjct: 1605 QIPRSLXNCKEXEILNLGNNQINDTFPFWLGSLPELQLLILRHNRFHGAIESPRANFEFP 1664

Query: 73   KLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSR 132
             L IIDLS N F G LP+  FL W AM  V+     Y+Q +       +  +   Y+YS 
Sbjct: 1665 TLCIIDLSYNXFAGNLPAGYFLTWVAMSRVDEEHFSYMQSMTGFVLIRTYRLYENYNYSM 1724

Query: 133  TMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ----------------- 175
            TM +KG    Y KIP     I LS+N+F G IP SI  L+GL                  
Sbjct: 1725 TMTNKGMERVYPKIPRSFKAIDLSSNKFIGEIPKSIGKLRGLHLLNISSNSLTGHIPSFL 1784

Query: 176  ---------------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDG 220
                            SG IPQQL  +TFL FFNVS N+L GPIPQGKQF TF N S++G
Sbjct: 1785 GNLAQLEALDLSQNNLSGEIPQQLKGMTFLEFFNVSHNHLMGPIPQGKQFNTFQNDSYEG 1844

Query: 221  NSGLCGKPLSKGCDSGEAPTNEDHTEGSEESLFSGAS-DWKIILTGYAGGLVAGLVLGFN 279
            N GLCG PLSK C + ++  +   T      L SG   +  I+L GY  GLV G+ +G+ 
Sbjct: 1845 NPGLCGNPLSKECGNSKSTASSPPTYKHGGDLESGRKVELMIVLMGYGSGLVVGMAIGYT 1904

Query: 280  FSTGIIGWILEKLG 293
             +T    W ++  G
Sbjct: 1905 LTTRKHEWFVKTFG 1918

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
TAIR|locus:2173777	792	RLP54 "receptor like protein 5	0.665	0.256	0.404	6.1e-32
TAIR|locus:2094563	595	RLP36 "receptor like protein 3	0.678	0.347	0.400	7.8e-32
TAIR|locus:2040035	671	RLP20 "receptor like protein 2	0.655	0.298	0.418	1.6e-30
TAIR|locus:2825389	784	RLP11 "AT1G71390" [Arabidopsis	0.662	0.257	0.409	2.5e-30
TAIR|locus:2046585	808	RLP27 "receptor like protein 2	0.649	0.245	0.398	4.4e-30
TAIR|locus:2096349	860	RLP31 "receptor like protein 3	0.672	0.238	0.406	1.4e-29
TAIR|locus:2046515	864	RLP24 "receptor like protein 2	0.642	0.226	0.391	1.8e-29
TAIR|locus:2119430	741	RLP47 "receptor like protein 4	0.629	0.259	0.425	2e-29
TAIR|locus:2046357	890	RLP23 "receptor like protein 2	0.695	0.238	0.386	2.4e-29
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.704	0.224	0.396	4.5e-29

TAIR|locus:2173777 RLP54 "receptor like protein 54" [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 6.1e-32, P = 6.1e-32
 Identities = 87/215 (40%), Positives = 121/215 (56%)

Query:     8 NTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRT 67
             N    ++PRSL+NC+ L+FL +  N I+DTFP WL  L +L +++LRSN F+G I  P  
Sbjct:   476 NQISGKLPRSLVNCTTLKFLNVEGNHINDTFPFWLKALTRLEIIVLRSNRFHGPISSPEV 535

Query:    68 SCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNT-SALRYLQDVLFPYGQVSSNVLG 126
             S  F+ LRIID+S N F G LP N F  W+A  +VNT    R+ +     + +  +  L 
Sbjct:   536 SLSFTALRIIDISRNSFNGSLPQNYFANWSA-PLVNTPQGYRWPEYTGDEHSKYETP-LW 593

Query:   127 TYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGL--------QFSG 178
             +Y  S  +  KGR +   KIP+    I  S N F+G IP SI +LK L         F+G
Sbjct:   594 SYP-SIHLRIKGRSIELGKIPDTYTSIDFSGNSFEGQIPESIGDLKSLIVLDLSNNSFTG 652

Query:   179 RIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATF 213
             RIP  LA+L  L   ++S N ++G IPQ  +  TF
Sbjct:   653 RIPSSLAKLKQLESLDLSQNRISGNIPQELRELTF 687

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2094563 RLP36 "receptor like protein 36" [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 7.8e-32, P = 7.8e-32
 Identities = 91/227 (40%), Positives = 123/227 (54%)

Query:     6 NENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEP 65
             + N  + ++P+SLINC ++EFL +  N+I DTFP WLG+LP L VL+L SN FYG +  P
Sbjct:   293 SSNNLVGKLPKSLINCERIEFLNVKGNKIMDTFPFWLGSLPYLKVLMLGSNAFYGPVYNP 352

Query:    66 RTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNV- 124
                 GF  +RIID+S+N F G LP + F  W  M +V + +     D+  P  +   NV 
Sbjct:   353 SAYLGFPSIRIIDISNNNFVGSLPQDYFANWLEMSLVWSGS-----DI--PQFKYMGNVN 405

Query:   125 LGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIA--------NLKGLQF 176
               TYD S  +  KG    +++I      I  S NRF G IP SI         NL G  F
Sbjct:   406 FSTYD-SIDLVYKGVETDFDRIFEGFNAIDFSGNRFSGHIPGSIGLLSELRLLNLSGNAF 464

Query:   177 SGRIPQQLAELTFLAFFNVSDNYLTGPIP--QGKQFATFDNTSFDGN 221
             +G IP  LA +T L   ++S N L+G IP   GK  +   NT+F  N
Sbjct:   465 TGNIPPSLANITNLESLDLSRNNLSGEIPISLGK-LSFLSNTNFSYN 510

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2040035 RLP20 "receptor like protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 1.6e-30, P = 1.6e-30
 Identities = 90/215 (41%), Positives = 113/215 (52%)

Query:     8 NTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRT 67
             N    ++PRSL+NCS LEFL +  N+I DTFP WL  LPKL VL L SN FYG I  P  
Sbjct:   351 NRLTGKLPRSLLNCSSLEFLSVDNNRIKDTFPFWLKALPKLQVLTLSSNKFYGPISPPHQ 410

Query:    68 S-CGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMK-IVNTSALRYLQDVLFPYGQVSSNVL 125
                GF +LRI+++SDN+FTG L S  F  W A   ++N     Y+     PYG V    L
Sbjct:   411 GPLGFPELRILEISDNKFTGSLSSRYFENWKASSAMMNEYVGLYMVYEKNPYGVVVYTFL 470

Query:   126 GTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGL--------QFS 177
                D    +  KG  M   ++    + I  S N  +G IP SI  LK L         F+
Sbjct:   471 DRID----LKYKGLNMEQARVLTSYSAIDFSRNLLEGNIPESIGLLKALIALNLSNNAFT 526

Query:   178 GRIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFA 211
             G IPQ LA L  L   ++S N L+G IP G KQ +
Sbjct:   527 GHIPQSLANLKELQSLDMSRNQLSGTIPNGLKQLS 561

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825389 RLP11 "AT1G71390" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.5e-30, P = 2.5e-30
 Identities = 91/222 (40%), Positives = 117/222 (52%)

Query:    13 RIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFS 72
             + P+SLINC  L F+ +  N+I DTFPSWLG+LP L VLILRSN FYG +  P  S GF 
Sbjct:   472 KFPKSLINCKGLHFVNVESNKIKDTFPSWLGSLPSLQVLILRSNDFYGPLYHPSMSIGFQ 531

Query:    73 KLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSR 132
              LRIID+S N F+G LP N F  W  M  +   +  Y++D+         N    Y  S 
Sbjct:   532 GLRIIDISHNGFSGVLPPNFFSSWREMITLVHGSYEYIEDI--------QNYSLIYR-SM 582

Query:   133 TMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIA--------NLKGLQFSGRIPQQL 184
              M +KG  M++ +I      I  S NR  G IP SI         NL G  F+  IP+  
Sbjct:   583 EMVNKGVEMSFERIRQDFRAIDFSENRIYGEIPESIGCLEELRLLNLSGNAFTSDIPRVW 642

Query:   185 AELTFLAFFNVSDNYLTGPIPQ--GK-QFATFDNTSFDGNSG 223
               LT L   ++S N L+G IPQ  GK  F ++ N S +   G
Sbjct:   643 ENLTKLETLDLSRNKLSGQIPQDLGKLSFLSYMNFSHNRLQG 684

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.4e-30, P = 4.4e-30
 Identities = 86/216 (39%), Positives = 113/216 (52%)

Query:     8 NTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEP-R 66
             N    ++PRSL+NCS L F+ +  N+I DTFP WL  LP L  L LRSN F+G I  P R
Sbjct:   468 NQLTGKLPRSLLNCSMLRFVSVDHNKIKDTFPFWLKALPDLQALTLRSNKFHGPISPPDR 527

Query:    67 TSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKI-VNTSALRYLQDVLFPYGQVSSNVL 125
                 F KLRI+++SDN FTG LP N F+ W A  + +N     Y+ D   PY        
Sbjct:   528 GPLAFPKLRILEISDNNFTGSLPPNYFVNWEASSLQMNEDGRIYMGDYNNPYY------- 580

Query:   126 GTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGL--------QFS 177
               Y+ +  +  KG  M   K+    A I  S N+ +G IP SI  LK L         F+
Sbjct:   581 -IYEDTVDLQYKGLFMEQGKVLTSYATIDFSGNKLEGQIPESIGLLKALIALNLSNNAFT 639

Query:   178 GRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATF 213
             G IP  LA +T L   ++S N L+G IP G +  +F
Sbjct:   640 GHIPLSLANVTELESLDLSRNQLSGTIPNGLKTLSF 675

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2096349 RLP31 "receptor like protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.4e-29, P = 1.4e-29
 Identities = 89/219 (40%), Positives = 118/219 (53%)

Query:    14 IPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSK 73
             +P+SLI+C  ++ L +  N+I D FPSWLG+LP L+VLILRSN FYG + +P  S GF  
Sbjct:   534 LPKSLIHCKAMQLLNVRSNKIKDKFPSWLGSLPSLHVLILRSNEFYGTLYQPHASIGFQS 593

Query:    74 LRIIDLSDNRFTGKLPSNSFLCWNAM-KIVNTSALRYLQDVLFPY-GQVSSNVLGTYDYS 131
             LR+ID+S N   G LPS  F  W  M ++        L +   PY G+V +      D  
Sbjct:   594 LRVIDVSHNDLIGTLPSFYFSSWREMSRLTGEDGDFRLSEA--PYMGKVLNATAFFVDSM 651

Query:   132 RTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ--------FSGRIPQQ 183
               +N KG    + +I      I  S NRF G IP SI  LK L+        F+G IPQ 
Sbjct:   652 EIVN-KGVETEFKRINEENKVINFSGNRFSGNIPESIGLLKELRHLNLSSNAFTGNIPQS 710

Query:   184 LAELTFLAFFNVSDNYLTGPIPQGKQFATFDNT-SFDGN 221
             LA L  L   ++S N L+G IPQG    +F +T +F  N
Sbjct:   711 LANLMKLEALDLSLNQLSGQIPQGLGSLSFMSTMNFSYN 749

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046515 RLP24 "receptor like protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.8e-29, P = 1.8e-29
 Identities = 83/212 (39%), Positives = 113/212 (53%)

Query:     8 NTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRT 67
             N    ++PRSL+NCS L FL +  N++ DTFP WL  LP L VL LRSN FYG I  P  
Sbjct:   549 NRLTGKLPRSLLNCSSLRFLSVDNNRVKDTFPFWLKALPNLRVLTLRSNKFYGPISPPHQ 608

Query:    68 S-CGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIV-NTSALRYLQDVLFPYGQVSSNVL 125
                GF +LRI +++DN FTG LP + F+ W A  +  N     Y+   ++ Y + +++ +
Sbjct:   609 GPLGFPELRIFEIADNMFTGSLPPSFFVNWKASALTKNEDGGLYM---VYEYDKAANSPV 665

Query:   126 GTYDYSRTMNS--KGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGL--------Q 175
               Y Y+ T++   KG  M   ++    A I  S NR  G IP SI  LK L         
Sbjct:   666 -RYTYTDTIDLQYKGLHMEQERVLTSYAAIDFSGNRLQGQIPESIGLLKALIALNLSNNA 724

Query:   176 FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG 207
             F+G IP   A L  L   ++S N L+G IP G
Sbjct:   725 FTGHIPLSFANLMNLESLDMSGNQLSGTIPNG 756

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 2.0e-29, P = 2.0e-29
 Identities = 88/207 (42%), Positives = 115/207 (55%)

Query:     8 NTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRT 67
             N F   +P+SLINCS +EFL +  N+I+DTFPSWL  LP L +L+LRSN FYG I  P  
Sbjct:   428 NLFSGELPKSLINCSDIEFLNVEDNRINDTFPSWLELLPNLQILVLRSNEFYGPIFSPGD 487

Query:    68 SCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGT 127
             S  FS+LRI D+S+NRFTG LPS+ F+ W+ M  V     R +Q     Y  V+      
Sbjct:   488 SLSFSRLRIFDISENRFTGVLPSDYFVGWSVMSSVVDIDGRIIQ-----Y-TVTGIDRDF 541

Query:   128 YDYSRTMNSKGRVMTY-NKIPNILAGIILSNNRFDGAIPASIANLKGL--------QFSG 178
             Y  S  + +KG  M        I   I +S NR +G IP SI  LK +         F+G
Sbjct:   542 YHKSVALINKGLKMELVGSGFTIYKTIDVSGNRLEGDIPESIGLLKEVIVLSMSNNAFTG 601

Query:   179 RIPQQLAELTFLAFFNVSDNYLTGPIP 205
              IP  L+ L+ L   ++S N L+G IP
Sbjct:   602 HIPPSLSNLSNLQSLDLSQNRLSGSIP 628

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2046357 RLP23 "receptor like protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 2.4e-29, P = 2.4e-29
 Identities = 90/233 (38%), Positives = 118/233 (50%)

Query:     6 NENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEP 65
             + N    ++PRS +NCS L+FL +  N+I DTFP WL  LP L VL LRSN FYG I  P
Sbjct:   560 SHNRLTGKLPRSFVNCSSLKFLSVINNRIEDTFPFWLKALPNLQVLTLRSNRFYGPISPP 619

Query:    66 RTS-CGFSKLRIIDLSDNRFTGKLPSNSFLCWNAM-KIVNTSALRYL--QDVLFPYGQVS 121
                  GF +LRI ++SDN+FTG LP N F+ W A  + +N     Y+  ++ LF  G   
Sbjct:   620 HQGPLGFPELRIFEISDNKFTGSLPPNYFVNWKASSRTMNQDGGLYMVYEEKLFDEGGYG 679

Query:   122 SNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGL------- 174
                   Y  +  +  KG  M   K     A I  S NR +G IP SI  LK L       
Sbjct:   680 ------YTDALDLQYKGLHMEQAKALTSYAAIDFSGNRLEGQIPESIGLLKALIAVNISN 733

Query:   175 -QFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGK---QFATFDNTSFDGNSG 223
               F+G IP  +A L  L   ++S N L+G IP G     F  + N S +  +G
Sbjct:   734 NAFTGHIPLSMANLENLESLDMSRNQLSGTIPNGLGSISFLAYINVSHNQLTG 786

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 4.5e-29, P = 4.5e-29
 Identities = 98/247 (39%), Positives = 132/247 (53%)

Query:     8 NTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRT 67
             N  + ++PRSL   S LE L +  N+I+DTFP WL +LPKL VL+LRSN F+G I E   
Sbjct:   638 NQLVGKLPRSLSFFSTLEVLNVESNRINDTFPFWLSSLPKLQVLVLRSNAFHGPIHEAT- 696

Query:    68 SCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGT 127
                F +LRIID+S NRF G LP+  F+ W+AM     S+L   +D      Q +   +G+
Sbjct:   697 ---FPELRIIDISHNRFNGTLPTEYFVKWSAM-----SSLGKNED------QSNEKYMGS 742

Query:   128 ---YDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGL--------QF 176
                Y  S  + +KG  M   +I  I   +  S NRF+G IP SI  LK L         F
Sbjct:   743 GLYYQDSMVLMNKGVAMELVRILTIYTAVDFSGNRFEGEIPKSIGLLKELLVLSLSNNAF 802

Query:   177 SGRIPQQLAELTFLAFFNVSDNYLTGPIPQ--GK-QFATFDNTSFDGNSGLC--GKP-LS 230
             SG +P  +  LT L   +VS N LTG IPQ  G   F  + N S +  +GL   G+  L+
Sbjct:   803 SGHMPSSMGNLTALESLDVSKNKLTGEIPQELGDLSFLAYMNFSHNQLAGLVPGGQQFLT 862

Query:   231 KGCDSGE 237
             + C + E
Sbjct:   863 QNCSAFE 869

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	305
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 74.5 bits (183), Expect = 9e-15
 Identities = 65/247 (26%), Positives = 99/247 (40%), Gaps = 43/247 (17%)

Query: 8   NTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRT 67
           N+    IP+SL  C  L  + L  N  S   PS    LP +  L + +N   G I   + 
Sbjct: 390 NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW 449

Query: 68  SCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGT 127
                 L+++ L+ N+F G LP             ++   + L+++     Q S  V   
Sbjct: 450 D--MPSLQMLSLARNKFFGGLP-------------DSFGSKRLENLDLSRNQFSGAV--- 491

Query: 128 YDYSRTMNSKGRVMTYNKIPNILAGII--------------LSNNRFDGAIPASIANLKG 173
               R + S   +M      N L+G I              LS+N+  G IPAS + +  
Sbjct: 492 ---PRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPV 548

Query: 174 L--------QFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLC 225
           L        Q SG IP+ L  +  L   N+S N+L G +P    F   + ++  GN  LC
Sbjct: 549 LSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLC 608

Query: 226 GKPLSKG 232
           G   + G
Sbjct: 609 GGDTTSG 615

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 65.6 bits (160), Expect = 7e-12
 Identities = 67/222 (30%), Positives = 97/222 (43%), Gaps = 42/222 (18%)

Query: 8   NTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRT 67
           N  + +IP SL N + LEFL L  NQ+    P  LG +  L  + L  N   G I  P  
Sbjct: 174 NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI--PYE 231

Query: 68  SCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYL---QDVLFPYGQVSSNV 124
             G + L  +DL  N  TG +PS+         + N   L+YL   Q+ L   G +  ++
Sbjct: 232 IGGLTSLNHLDLVYNNLTGPIPSS---------LGNLKNLQYLFLYQNKL--SGPIPPSI 280

Query: 125 LG-----TYDYSRTMNSKGRVMTYNKIPNILAGII------LSNNRFDGAIPASIANLKG 173
                  + D S    S        +IP ++  +       L +N F G IP ++ +L  
Sbjct: 281 FSLQKLISLDLSDNSLS-------GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR 333

Query: 174 LQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG 207
           LQ        FSG IP+ L +   L   ++S N LTG IP+G
Sbjct: 334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.1 bits (151), Expect = 8e-11
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 150 LAGIILSNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLT 201
           L  I LS N   G IP S+ ++  L+        F+G IP+ L +LT L   N++ N L+
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 202 GPIPQGKQFATFDNTSFD--GNSGLCGKPLSKGCDS 235
           G +P           SF+   N+GLCG P  + C  
Sbjct: 504 GRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGP 539

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 60.6 bits (147), Expect = 3e-10
 Identities = 81/286 (28%), Positives = 114/286 (39%), Gaps = 71/286 (24%)

Query: 8   NTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRT 67
           N F  +IP +L +  +L+ L L  N+ S   P  LG    L VL L +N   G I E   
Sbjct: 318 NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC 377

Query: 68  SCG-------FSK---------------LRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTS 105
           S G       FS                LR + L DN F+G+LPS         K+    
Sbjct: 378 SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS------EFTKL---- 427

Query: 106 ALRYLQDVLFPYGQVSSNVLGTYDYSR------TMNSKGRVMTYNKIPNI-----LAGII 154
            L Y  D+       ++N+ G  +  +       M S  R   +  +P+      L  + 
Sbjct: 428 PLVYFLDI------SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLD 481

Query: 155 LSNNRFDGAIPASIANLKGL--------QFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQ 206
           LS N+F GA+P  + +L  L        + SG IP +L+    L   ++S N L+G IP 
Sbjct: 482 LSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP- 540

Query: 207 GKQFATFDNTSFDGNSGLCGKPLSKGCDSGEAPTNEDHTEGSEESL 252
                     SF     L    LS+   SGE P N     G+ ESL
Sbjct: 541 ---------ASFSEMPVLSQLDLSQNQLSGEIPKN----LGNVESL 573

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 55/207 (26%), Positives = 81/207 (39%), Gaps = 62/207 (29%)

Query: 6   NENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEP 65
           ++N+    IP  +I    LE L L  N  +   P  L +LP+L VL L SN F G I  P
Sbjct: 292 SDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI--P 349

Query: 66  RTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVL 125
           +     + L ++DLS N  TG++P    LC                              
Sbjct: 350 KNLGKHNNLTVLDLSTNNLTGEIPEG--LC------------------------------ 377

Query: 126 GTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ--------FS 177
                     S G           L  +IL +N  +G IP S+   + L+        FS
Sbjct: 378 ----------SSGN----------LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417

Query: 178 GRIPQQLAELTFLAFFNVSDNYLTGPI 204
           G +P +  +L  + F ++S+N L G I
Sbjct: 418 GELPSEFTKLPLVYFLDISNNNLQGRI 444

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 55/208 (26%), Positives = 79/208 (37%), Gaps = 38/208 (18%)

Query: 8   NTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRT 67
           N     IP  + + S L+ L LG N +    P+ L  L  L  L L SN   G I  PR 
Sbjct: 150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI--PRE 207

Query: 68  SCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGT 127
                 L+ I L  N  +G++P          +I   ++L +L         V +N+ G 
Sbjct: 208 LGQMKSLKWIYLGYNNLSGEIPY---------EIGGLTSLNHLD-------LVYNNLTGP 251

Query: 128 YDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGL--------QFSGR 179
              S                  L  + L  N+  G IP SI +L+ L          SG 
Sbjct: 252 IPSSLGNLKN------------LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE 299

Query: 180 IPQQLAELTFLAFFNVSDNYLTGPIPQG 207
           IP+ + +L  L   ++  N  TG IP  
Sbjct: 300 IPELVIQLQNLEILHLFSNNFTGKIPVA 327

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 42/144 (29%), Positives = 61/144 (42%), Gaps = 37/144 (25%)

Query: 70  GFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYD 129
               ++ I+LS+N+ +G +P + F          +S+LRYL         +S+N      
Sbjct: 91  RLPYIQTINLSNNQLSGPIPDDIF--------TTSSSLRYLN--------LSNN------ 128

Query: 130 YSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQF--------SGRIP 181
                N  G  +    IPN L  + LSNN   G IP  I +   L+          G+IP
Sbjct: 129 -----NFTGS-IPRGSIPN-LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP 181

Query: 182 QQLAELTFLAFFNVSDNYLTGPIP 205
             L  LT L F  ++ N L G IP
Sbjct: 182 NSLTNLTSLEFLTLASNQLVGQIP 205

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 2/86 (2%)

Query: 6   NENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEP 65
           + N F   +PR L + S+L  L L  N++S   P  L +  KL  L L  N   G I  P
Sbjct: 483 SRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI--P 540

Query: 66  RTSCGFSKLRIIDLSDNRFTGKLPSN 91
            +      L  +DLS N+ +G++P N
Sbjct: 541 ASFSEMPVLSQLDLSQNQLSGEIPKN 566

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 34/103 (33%), Positives = 46/103 (44%), Gaps = 3/103 (2%)

Query: 6   NENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEP 65
           +EN     IP  L +C KL  L L  NQ+S   P+    +P L+ L L  N   G I  P
Sbjct: 507 SENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI--P 564

Query: 66  RTSCGFSKLRIIDLSDNRFTGKLPSN-SFLCWNAMKIVNTSAL 107
           +       L  +++S N   G LPS  +FL  NA  +     L
Sbjct: 565 KNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDL 607

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 14  IPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSK 73
           IP  +     L+ + L  N I    P  LG++  L VL L  N F G I  P +    + 
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI--PESLGQLTS 491

Query: 74  LRIIDLSDNRFTGKLPS 90
           LRI++L+ N  +G++P+
Sbjct: 492 LRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 23 KLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDN 82
           L+ L L  N+++         LP L VL L  N    I   P    G   LR +DLS N
Sbjct: 1  NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSI--SPEAFSGLPSLRSLDLSGN 58

Query: 83 RF 84
            
Sbjct: 59 NL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	305
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.95
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.92
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.78
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.77
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.74
PLN03150	623	hypothetical protein; Provisional	99.72
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.71
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.71
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.7
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.68
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.68
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.62
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.56
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.54
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.53
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.5
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.49
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.48
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.45
PLN03150	623	hypothetical protein; Provisional	99.45
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.37
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.34
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.29
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.28
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.28
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.23
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.15
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.11
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.1
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.08
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.07
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.04
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.0
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.99
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.82
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.59
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.54
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.43
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.41
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.36
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.19
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.15
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.14
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.11
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.11
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.94
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.9
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.87
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.75
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.71
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.71
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.68
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.63
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.59
PRK15386	426	type III secretion protein GogB; Provisional	97.32
PRK15386	426	type III secretion protein GogB; Provisional	97.25
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.01
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.97
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.88
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.78
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.72
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.6
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.53
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.48
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.3
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.12
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.63
smart00370	26	LRR Leucine-rich repeats, outliers.	95.63
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.62
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.43
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.28
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.87
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.39
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.43
smart00370	26	LRR Leucine-rich repeats, outliers.	92.2
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.2
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.48
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	87.83
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	86.73
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	81.14

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.95  E-value=3.1e-27  Score=236.60  Aligned_cols=217  Identities=26%  Similarity=0.382  Sum_probs=178.5

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      +.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|.+++.+|..+  ..+++|+.|+++
T Consensus       383 ~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~  460 (968)
T PLN00113        383 FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK--WDMPSLQMLSLA  460 (968)
T ss_pred             CEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh--ccCCCCcEEECc
Confidence            368999999999999999999999999999999999899999999999999999999999888777  788999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCcccc-ccccccccccCccc---ccccccccccEEEcc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGT-YDYSRTMNSKGRVM---TYNKIPNILAGIILS  156 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~L~~LdLs  156 (305)
                      +|++.|.+|.. + ..++|+.|++++|...+..+       ..+... .+..+++..+.+..   .....+++|+.|||+
T Consensus       461 ~n~~~~~~p~~-~-~~~~L~~L~ls~n~l~~~~~-------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  531 (968)
T PLN00113        461 RNKFFGGLPDS-F-GSKRLENLDLSRNQFSGAVP-------RKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLS  531 (968)
T ss_pred             CceeeeecCcc-c-ccccceEEECcCCccCCccC-------hhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECC
Confidence            99999888853 3 56889999998875543222       111111 12233344443332   233447889999999


Q ss_pred             CCccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCCCCCCcC
Q 045166          157 NNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKP  228 (305)
Q Consensus       157 ~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp~lc~~~  228 (305)
                      +|.++|.+|..+.++++|+        ++|.+|..+..+++|++|++++|+++|.+|...++.++....+.|||.+||.+
T Consensus       532 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        532 HNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             CCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            9999999999999888876        78899999999999999999999999999999999999999999999999854

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.92  E-value=1.8e-24  Score=216.75  Aligned_cols=217  Identities=21%  Similarity=0.314  Sum_probs=135.7

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhh------------------------cCCCCCCEEEccccc
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWL------------------------GTLPKLNVLILRSNI   57 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~------------------------~~l~~L~~L~L~~N~   57 (305)
                      +|++++|.+++.+|..++.+++|+.|++++|++++.+|..+                        +.+++|+.|++++|+
T Consensus       336 ~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~  415 (968)
T PLN00113        336 VLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS  415 (968)
T ss_pred             EEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE
Confidence            45555555555555555555555555555555555445444                        445555555555555


Q ss_pred             ceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCcccccccccccccc
Q 045166           58 FYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSK  137 (305)
Q Consensus        58 l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (305)
                      +++.+|..+  ..+++|+.||+++|.+++.+|.. +..+++|+.|++++|...+.       +|.......+..+++..+
T Consensus       416 l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~-------~p~~~~~~~L~~L~ls~n  485 (968)
T PLN00113        416 FSGELPSEF--TKLPLVYFLDISNNNLQGRINSR-KWDMPSLQMLSLARNKFFGG-------LPDSFGSKRLENLDLSRN  485 (968)
T ss_pred             eeeECChhH--hcCCCCCEEECcCCcccCccChh-hccCCCCcEEECcCceeeee-------cCcccccccceEEECcCC
Confidence            555555444  45555555555555555444433 44455555555555433321       121111112233444444


Q ss_pred             Cccc---ccccccccccEEEccCCccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCC
Q 045166          138 GRVM---TYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQ  206 (305)
Q Consensus       138 ~~~~---~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~  206 (305)
                      .+..   .....+++|+.|+|++|++++.+|..+.++++|+        ++|.+|..+..+++|+.|||++|+++|.+|.
T Consensus       486 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  565 (968)
T PLN00113        486 QFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK  565 (968)
T ss_pred             ccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCCh
Confidence            4332   2234477899999999999999999998888776        7788999999999999999999999999997


Q ss_pred             C-CCCCccCCCccCCCCCCCCcC
Q 045166          207 G-KQFATFDNTSFDGNSGLCGKP  228 (305)
Q Consensus       207 ~-~~~~~l~~~~~~gNp~lc~~~  228 (305)
                      . ..+..+..+++++|+..+..|
T Consensus       566 ~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        566 NLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             hHhcCcccCEEeccCCcceeeCC
Confidence            5 456678888899998776544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.78  E-value=3.7e-20  Score=165.49  Aligned_cols=209  Identities=22%  Similarity=0.251  Sum_probs=153.6

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD   81 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~   81 (305)
                      .|.|..|.+...-..+|-.|.++++|+|..|+++..-.+++.+++.|+.|+||+|.+....+..+  .-.++|+.|||++
T Consensus       249 nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W--sftqkL~~LdLs~  326 (873)
T KOG4194|consen  249 NLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW--SFTQKLKELDLSS  326 (873)
T ss_pred             hhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh--hhcccceeEeccc
Confidence            35566677765556677788888888888888887666778888888888888888888777777  5567888888888


Q ss_pred             CcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccc
Q 045166           82 NRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFD  161 (305)
Q Consensus        82 N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~  161 (305)
                      |+++ .++++.|..+..|++|++++|....                           +....+..+++|+.|||++|.++
T Consensus       327 N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~---------------------------l~e~af~~lssL~~LdLr~N~ls  378 (873)
T KOG4194|consen  327 NRIT-RLDEGSFRVLSQLEELNLSHNSIDH---------------------------LAEGAFVGLSSLHKLDLRSNELS  378 (873)
T ss_pred             cccc-cCChhHHHHHHHhhhhcccccchHH---------------------------HHhhHHHHhhhhhhhcCcCCeEE
Confidence            8888 7887778888888888888753211                           11112234778888888888888


Q ss_pred             cccchh---hc---CCCCceeee----cCC-ccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCCCCCCcCCC
Q 045166          162 GAIPAS---IA---NLKGLQFSG----RIP-QQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLS  230 (305)
Q Consensus       162 g~~p~~---~~---~L~~L~l~g----~ip-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp~lc~~~~~  230 (305)
                      +.|-+.   |.   .|+.|.+.|    .|| ..|..+..|++|||.+|.+...-|....-..++.+.+..-.++|+|.+.
T Consensus       379 ~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~  458 (873)
T KOG4194|consen  379 WCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLK  458 (873)
T ss_pred             EEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHH
Confidence            766542   33   344444555    344 3788999999999999999877776543336777778888899998655


Q ss_pred             ----------------CCCCCCCCCC
Q 045166          231 ----------------KGCDSGEAPT  240 (305)
Q Consensus       231 ----------------~~c~~~~~~~  240 (305)
                                      ..|..|+...
T Consensus       459 Wl~qWl~~~~lq~sv~a~CayPe~La  484 (873)
T KOG4194|consen  459 WLAQWLYRRKLQSSVIAKCAYPEPLA  484 (873)
T ss_pred             HHHHHHHhcccccceeeeccCCcccc
Confidence                            4688887654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.77  E-value=7.7e-21  Score=145.69  Aligned_cols=173  Identities=23%  Similarity=0.372  Sum_probs=107.0

Q ss_pred             hcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCccc
Q 045166           19 INCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNA   98 (305)
Q Consensus        19 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~   98 (305)
                      .++++.+.|.|++|+++. +|+.+..+.+|+.|++++|++.. +|..+  ..++.|+.|+++-|++. .+|.+ |+.++.
T Consensus        30 f~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie~-lp~~i--ssl~klr~lnvgmnrl~-~lprg-fgs~p~  103 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIEE-LPTSI--SSLPKLRILNVGMNRLN-ILPRG-FGSFPA  103 (264)
T ss_pred             cchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhhh-cChhh--hhchhhhheecchhhhh-cCccc-cCCCch
Confidence            345555566666666654 55556666666666666666653 55555  55666666666666665 56655 666666


Q ss_pred             chhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccccccchhhcCCCCceeee
Q 045166           99 MKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSG  178 (305)
Q Consensus        99 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~g  178 (305)
                      |+.|+++.|+.-.      ..+|++++.                    +..|+.|.|++|.|. .+|+.+++|++|++.+
T Consensus       104 levldltynnl~e------~~lpgnff~--------------------m~tlralyl~dndfe-~lp~dvg~lt~lqil~  156 (264)
T KOG0617|consen  104 LEVLDLTYNNLNE------NSLPGNFFY--------------------MTTLRALYLGDNDFE-ILPPDVGKLTNLQILS  156 (264)
T ss_pred             hhhhhcccccccc------ccCCcchhH--------------------HHHHHHHHhcCCCcc-cCChhhhhhcceeEEe
Confidence            6666665543221      112222211                    455666777777777 7777777777777433


Q ss_pred             -------cCCccccCCCCCCEEeccCCcceecCCCCCCCCcc---CCCccCCCCCC
Q 045166          179 -------RIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATF---DNTSFDGNSGL  224 (305)
Q Consensus       179 -------~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l---~~~~~~gNp~l  224 (305)
                             .+|.+++.++.|+.|.+.+|+++-..|+..++...   ....++.|||.
T Consensus       157 lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv  212 (264)
T KOG0617|consen  157 LRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWV  212 (264)
T ss_pred             eccCchhhCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCC
Confidence                   57888999999999999999999666654443322   22345667765

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.74  E-value=1.8e-19  Score=162.50  Aligned_cols=81  Identities=20%  Similarity=0.284  Sum_probs=55.8

Q ss_pred             cccccEEEccCCccccccchhhcCCCCce--------------------------------eeecCCccccCCCCCCEEe
Q 045166          147 PNILAGIILSNNRFDGAIPASIANLKGLQ--------------------------------FSGRIPQQLAELTFLAFFN  194 (305)
Q Consensus       147 ~~~L~~LdLs~N~l~g~~p~~~~~L~~L~--------------------------------l~g~ip~~l~~l~~L~~L~  194 (305)
                      ..+|++|+||.|+++ .+|..+..|+.|+                                ....+|+.++.|..|+.|.
T Consensus       267 W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~  345 (1255)
T KOG0444|consen  267 WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLK  345 (1255)
T ss_pred             Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhc
Confidence            445666666666666 5666555555544                                2235778888888888888


Q ss_pred             ccCCcceecCCCCC-CCCccCCCccCCCCCCCCcCC
Q 045166          195 VSDNYLTGPIPQGK-QFATFDNTSFDGNSGLCGKPL  229 (305)
Q Consensus       195 Ls~N~l~g~ip~~~-~~~~l~~~~~~gNp~lc~~~~  229 (305)
                      |++|++- ..|+.. -+..+..+++..||.+.-+|-
T Consensus       346 L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  346 LDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             cccccee-echhhhhhcCCcceeeccCCcCccCCCC
Confidence            8888887 566654 456788888999998876554

>PLN03150 hypothetical protein; Provisional

Probab=99.72  E-value=3.5e-17  Score=155.59  Aligned_cols=118  Identities=31%  Similarity=0.506  Sum_probs=92.3

Q ss_pred             CCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccc
Q 045166           47 KLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLG  126 (305)
Q Consensus        47 ~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  126 (305)
                      .++.|+|++|.+.|.+|..+  +.+++|+.|+|++|.++|.+|.. ++.                               
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i--~~L~~L~~L~Ls~N~l~g~iP~~-~~~-------------------------------  464 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDI--SKLRHLQSINLSGNSIRGNIPPS-LGS-------------------------------  464 (623)
T ss_pred             EEEEEECCCCCccccCCHHH--hCCCCCCEEECCCCcccCcCChH-HhC-------------------------------
Confidence            37788999999999888888  88999999999999999888864 332                               


Q ss_pred             cccccccccccCcccccccccccccEEEccCCccccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCcceecCCC
Q 045166          127 TYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQ  206 (305)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~  206 (305)
                                          +++|+.|||++|+++|.+|..                ++++++|++|+|++|+++|.+|.
T Consensus       465 --------------------l~~L~~LdLs~N~lsg~iP~~----------------l~~L~~L~~L~Ls~N~l~g~iP~  508 (623)
T PLN03150        465 --------------------ITSLEVLDLSYNSFNGSIPES----------------LGQLTSLRILNLNGNSLSGRVPA  508 (623)
T ss_pred             --------------------CCCCCEEECCCCCCCCCCchH----------------HhcCCCCCEEECcCCcccccCCh
Confidence                                456777888889888766544                56778899999999999999987


Q ss_pred             CC--CCCccCCCccCCCCCCCCcCCCCCCC
Q 045166          207 GK--QFATFDNTSFDGNSGLCGKPLSKGCD  234 (305)
Q Consensus       207 ~~--~~~~l~~~~~~gNp~lc~~~~~~~c~  234 (305)
                      ..  .+..+...++.+|+.+|+.|....|.
T Consensus       509 ~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        509 ALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             HHhhccccCceEEecCCccccCCCCCCCCc
Confidence            52  22344566789999999977656664

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.71  E-value=1.6e-18  Score=155.19  Aligned_cols=211  Identities=20%  Similarity=0.152  Sum_probs=125.9

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|+|++|+|+..--..|.++.+|.+|.|+.|+++...+..|.++++|+.|+|..|++.-.  ++..+.++++|+.|.|.
T Consensus       176 ~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv--e~ltFqgL~Sl~nlklq  253 (873)
T KOG4194|consen  176 KKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV--EGLTFQGLPSLQNLKLQ  253 (873)
T ss_pred             eEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee--hhhhhcCchhhhhhhhh
Confidence            3567777777765566777777777777777777764444566677777777777777532  23333677777777777


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCcccc-ccccccccccCc---ccccccccccccEEEcc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGT-YDYSRTMNSKGR---VMTYNKIPNILAGIILS  156 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~L~~LdLs  156 (305)
                      .|.++ .+-++.|..+.++++|+++.|+...-..       +.++.+ .+..++++.+.+   ..+.-...++|+.||||
T Consensus       254 rN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~-------g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs  325 (873)
T KOG4194|consen  254 RNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNE-------GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLS  325 (873)
T ss_pred             hcCcc-cccCcceeeecccceeecccchhhhhhc-------ccccccchhhhhccchhhhheeecchhhhcccceeEecc
Confidence            77777 6776777777777777777654322110       111111 122233333332   22223346789999999


Q ss_pred             CCccccccchhhcCCCCce---eeec-----CCccccCCCCCCEEeccCCcceecCCCC----CCCCccCCCccCCC
Q 045166          157 NNRFDGAIPASIANLKGLQ---FSGR-----IPQQLAELTFLAFFNVSDNYLTGPIPQG----KQFATFDNTSFDGN  221 (305)
Q Consensus       157 ~N~l~g~~p~~~~~L~~L~---l~g~-----ip~~l~~l~~L~~L~Ls~N~l~g~ip~~----~~~~~l~~~~~~gN  221 (305)
                      +|+++..-+..|.-|..|+   ++..     --..|..+.+|++|||++|.+++.|.+.    ..+..+..+.+.||
T Consensus       326 ~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN  402 (873)
T KOG4194|consen  326 SNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN  402 (873)
T ss_pred             ccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc
Confidence            9999955555665444443   3321     1224555667777777777777766553    22444555556665

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.71  E-value=1.1e-18  Score=149.65  Aligned_cols=226  Identities=18%  Similarity=0.161  Sum_probs=148.5

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEccc-ccceeeeCCCCCCCCCCCccEEeCC
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRS-NIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      .++|..|+|+...|.+|..+++|++|||++|+|+.+-|++|.++++|..|-+.+ |+++...-..|  .++.+|+.|.+.
T Consensus        71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F--~gL~slqrLllN  148 (498)
T KOG4237|consen   71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF--GGLSSLQRLLLN  148 (498)
T ss_pred             EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh--hhHHHHHHHhcC
Confidence            578999999988888999999999999999999999999999999988776655 88886333334  666666666666


Q ss_pred             CCcccccCChhhhhCcccchhccCccc------------------------ccccccccC-----CCCcCCCccc-----
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSAL------------------------RYLQDVLFP-----YGQVSSNVLG-----  126 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~------------------------~~~~~~~~~-----~~~~~~~~~~-----  126 (305)
                      -|++. -++.+.|..++++..|.+-.|                        .+...-..+     ....+.....     
T Consensus       149 an~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~  227 (498)
T KOG4237|consen  149 ANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS  227 (498)
T ss_pred             hhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence            66666 555555666666655554432                        110000000     0000000000     


Q ss_pred             ------------------cccccc--cccccCc-----ccccccccccccEEEccCCccccccchhhcCCCCce---eee
Q 045166          127 ------------------TYDYSR--TMNSKGR-----VMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ---FSG  178 (305)
Q Consensus       127 ------------------~~~~~~--~~~~~~~-----~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~---l~g  178 (305)
                                        .+....  .......     +..-+..+++|+.|+|++|++++.-+.+|..+..++   +.+
T Consensus       228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~  307 (498)
T KOG4237|consen  228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR  307 (498)
T ss_pred             hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence                              000000  0000111     111234589999999999999988888998877776   333


Q ss_pred             c-----CCccccCCCCCCEEeccCCcceecCCCC-CCCCccCCCccCCCCCCCCcCCC
Q 045166          179 R-----IPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKPLS  230 (305)
Q Consensus       179 ~-----ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~l~~~~~~gNp~lc~~~~~  230 (305)
                      .     --..|..+..|++|+|.+|+|+...|.. .....+..+.+-+||+.|+|.+.
T Consensus       308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~  365 (498)
T KOG4237|consen  308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLA  365 (498)
T ss_pred             chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchH
Confidence            1     2235778899999999999999887764 24455677788999999988543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.70  E-value=4.4e-19  Score=152.34  Aligned_cols=212  Identities=15%  Similarity=0.198  Sum_probs=145.1

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD   81 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~   81 (305)
                      +|++++|+++ .+|++++.+..++.|+.++|+++. +|+.++.+.+|..|+.++|.+.. +|+.+  +.+..+..+|..+
T Consensus        72 vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~-lp~~i~s~~~l~~l~~s~n~~~e-l~~~i--~~~~~l~dl~~~~  146 (565)
T KOG0472|consen   72 VLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSE-LPEQIGSLISLVKLDCSSNELKE-LPDSI--GRLLDLEDLDATN  146 (565)
T ss_pred             EEEeccchhh-hCCHHHHHHHHHHHhhcccchHhh-ccHHHhhhhhhhhhhccccceee-cCchH--HHHhhhhhhhccc
Confidence            5788888887 778888888888888888888886 88888888888888888888875 56666  6777888888888


Q ss_pred             CcccccCChhhhhCcccchhccCccccccccc---------------ccCCCCcCCCcccc-ccccccccccCc--cccc
Q 045166           82 NRFTGKLPSNSFLCWNAMKIVNTSALRYLQDV---------------LFPYGQVSSNVLGT-YDYSRTMNSKGR--VMTY  143 (305)
Q Consensus        82 N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~---------------~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~  143 (305)
                      |+++ ++|.+ +..+.++..+++.+|+.....               .-..+.+|..+... .+..+.+..+.+  .+++
T Consensus       147 N~i~-slp~~-~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef  224 (565)
T KOG0472|consen  147 NQIS-SLPED-MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEF  224 (565)
T ss_pred             cccc-cCchH-HHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCC
Confidence            8888 77866 667777777777664332211               01123344444332 111112222221  1122


Q ss_pred             ccccccccEEEccCCccccccchhhc-CCCCce-------eeecCCccccCCCCCCEEeccCCcceecCCCCCCCCccCC
Q 045166          144 NKIPNILAGIILSNNRFDGAIPASIA-NLKGLQ-------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDN  215 (305)
Q Consensus       144 ~~~~~~L~~LdLs~N~l~g~~p~~~~-~L~~L~-------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~  215 (305)
                       ..+..|+++.++.|+++ .+|.+.. +|.++.       -..+.|+++..+.+|++||+|+|.+++..++...+ ++..
T Consensus       225 -~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~  301 (565)
T KOG0472|consen  225 -PGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKF  301 (565)
T ss_pred             -CccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeee
Confidence             22555666666666666 5565554 455544       12368899999999999999999999887776666 8888


Q ss_pred             CccCCCCC
Q 045166          216 TSFDGNSG  223 (305)
Q Consensus       216 ~~~~gNp~  223 (305)
                      ..++|||.
T Consensus       302 L~leGNPl  309 (565)
T KOG0472|consen  302 LALEGNPL  309 (565)
T ss_pred             hhhcCCch
Confidence            88999984

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.68  E-value=1.3e-18  Score=149.46  Aligned_cols=212  Identities=24%  Similarity=0.255  Sum_probs=136.7

Q ss_pred             EEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhc-CCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166            3 YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLG-TLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD   81 (305)
Q Consensus         3 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~   81 (305)
                      |+|..|++. .+| +|.+|+.|.+|+++.|+|.- +|++.+ +++++.+|||+.|+++. .|..+  +.+++|.+||+|+
T Consensus       211 LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~l~vLDLRdNklke-~Pde~--clLrsL~rLDlSN  284 (565)
T KOG0472|consen  211 LYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEM-LPAEHLKHLNSLLVLDLRDNKLKE-VPDEI--CLLRSLERLDLSN  284 (565)
T ss_pred             HHhhhcccc-cCC-CCCccHHHHHHHhcccHHHh-hHHHHhcccccceeeecccccccc-CchHH--HHhhhhhhhcccC
Confidence            344555554 444 45555555555555555554 666655 78899999999999974 78888  8899999999999


Q ss_pred             CcccccCChhhhhCcccchhccCccccc------------------ccc------ccc------CCCCcCCC--------
Q 045166           82 NRFTGKLPSNSFLCWNAMKIVNTSALRY------------------LQD------VLF------PYGQVSSN--------  123 (305)
Q Consensus        82 N~l~g~lp~~~~~~l~~L~~L~l~~~~~------------------~~~------~~~------~~~~~~~~--------  123 (305)
                      |.++ .+|.. ++++ .|+.|.+.+|..                  +.+      ...      ..+..+..        
T Consensus       285 N~is-~Lp~s-Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~  361 (565)
T KOG0472|consen  285 NDIS-SLPYS-LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAI  361 (565)
T ss_pred             Cccc-cCCcc-cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhh
Confidence            9999 77866 8888 888888776411                  111      000      00000100        


Q ss_pred             -------------------cccc----cccccccccc--------------------------CcccccccccccccEEE
Q 045166          124 -------------------VLGT----YDYSRTMNSK--------------------------GRVMTYNKIPNILAGII  154 (305)
Q Consensus       124 -------------------~~~~----~~~~~~~~~~--------------------------~~~~~~~~~~~~L~~Ld  154 (305)
                                         .+..    ....++++-+                          ++.+.+...+++|+.|+
T Consensus       362 i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~  441 (565)
T KOG0472|consen  362 ITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLD  441 (565)
T ss_pred             hhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeee
Confidence                               0000    0000011100                          11122233467788888


Q ss_pred             ccCCccccccchhhcCCCCce------------------------------eeecCCcc-ccCCCCCCEEeccCCcceec
Q 045166          155 LSNNRFDGAIPASIANLKGLQ------------------------------FSGRIPQQ-LAELTFLAFFNVSDNYLTGP  203 (305)
Q Consensus       155 Ls~N~l~g~~p~~~~~L~~L~------------------------------l~g~ip~~-l~~l~~L~~L~Ls~N~l~g~  203 (305)
                      |++|-+. .+|.+++.+..|+                              -.+.++.. +.++.+|.+|||.+|.+...
T Consensus       442 L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~I  520 (565)
T KOG0472|consen  442 LSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQI  520 (565)
T ss_pred             cccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhC
Confidence            8888888 8888888777776                              12345444 88999999999999999955


Q ss_pred             CCCCCCCCccCCCccCCCCCC
Q 045166          204 IPQGKQFATFDNTSFDGNSGL  224 (305)
Q Consensus       204 ip~~~~~~~l~~~~~~gNp~l  224 (305)
                      .|..+...++..+.+.|||+-
T Consensus       521 Pp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  521 PPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ChhhccccceeEEEecCCccC
Confidence            555577888899999999985

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.68  E-value=2.2e-18  Score=155.53  Aligned_cols=44  Identities=20%  Similarity=0.261  Sum_probs=30.3

Q ss_pred             cCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCC
Q 045166          179 RIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNS  222 (305)
Q Consensus       179 ~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp  222 (305)
                      .+|+.+.++++|+.|+||+|+++..--...+...+..+.++.|.
T Consensus       236 ~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ  279 (1255)
T KOG0444|consen  236 IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ  279 (1255)
T ss_pred             cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch
Confidence            45667777888888888888887544444556666666677773

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.62  E-value=5e-17  Score=152.36  Aligned_cols=215  Identities=21%  Similarity=0.256  Sum_probs=148.1

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      +++|+++|+++ .+|++++.+.+|+.+++.+|+++. +|..+...++|+.|.+.+|.+.. +|...  .++++|++|||.
T Consensus       244 ~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~y-ip~~l--e~~~sL~tLdL~  318 (1081)
T KOG0618|consen  244 QYLDISHNNLS-NLPEWIGACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELEY-IPPFL--EGLKSLRTLDLQ  318 (1081)
T ss_pred             eeeecchhhhh-cchHHHHhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhhh-CCCcc--cccceeeeeeeh
Confidence            47899999998 677999999999999999999976 89899999999999999999986 55555  678999999999


Q ss_pred             CCcccccCChhhhhCccc-chhccCcccccccccccCCCCcCCCcc-------------------cccccccccccc---
Q 045166           81 DNRFTGKLPSNSFLCWNA-MKIVNTSALRYLQDVLFPYGQVSSNVL-------------------GTYDYSRTMNSK---  137 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~---  137 (305)
                      .|++. .+|+..+.-+.. |..++.+.|..-. .+...+..-..+.                   ...+..++++.+   
T Consensus       319 ~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~  396 (1081)
T KOG0618|consen  319 SNNLP-SLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN  396 (1081)
T ss_pred             hcccc-ccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence            99998 888765554443 5555555432111 0000000000000                   011222233333   


Q ss_pred             CcccccccccccccEEEccCCccccccchhhcCCCCce-------eeecCCccccCCCCCCEEeccCCccee-cCCCCCC
Q 045166          138 GRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ-------FSGRIPQQLAELTFLAFFNVSDNYLTG-PIPQGKQ  209 (305)
Q Consensus       138 ~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~-------l~g~ip~~l~~l~~L~~L~Ls~N~l~g-~ip~~~~  209 (305)
                      .++......+..|+.|+||+|+++ .+|..+.++..|+       ..-..| .+..++.|+.+|+|.|+|+- .+|....
T Consensus       397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p  474 (1081)
T KOG0618|consen  397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP  474 (1081)
T ss_pred             cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCC
Confidence            233444445666777777777777 7777777766665       223466 78999999999999999975 4455444


Q ss_pred             CCccCCCccCCCCCC
Q 045166          210 FATFDNTSFDGNSGL  224 (305)
Q Consensus       210 ~~~l~~~~~~gNp~l  224 (305)
                      .++++.++++||+.+
T Consensus       475 ~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  475 SPNLKYLDLSGNTRL  489 (1081)
T ss_pred             CcccceeeccCCccc
Confidence            578999999999863

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.56  E-value=7.4e-17  Score=123.92  Aligned_cols=168  Identities=25%  Similarity=0.420  Sum_probs=128.7

Q ss_pred             EEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCC
Q 045166            3 YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDN   82 (305)
Q Consensus         3 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N   82 (305)
                      |-||+|+++ .+|+.++.+.+|+.|++.+|++.. +|..++.+++|+.|+++-|++. ..|..|  +.++.|+.|||++|
T Consensus        38 LtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgf--gs~p~levldltyn  112 (264)
T KOG0617|consen   38 LTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGF--GSFPALEVLDLTYN  112 (264)
T ss_pred             hhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCcccc--CCCchhhhhhcccc
Confidence            678999999 888899999999999999999987 9999999999999999999997 589999  99999999999999


Q ss_pred             ccc-ccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccc
Q 045166           83 RFT-GKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFD  161 (305)
Q Consensus        83 ~l~-g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~  161 (305)
                      ++. ..+|.. |-.++.|+.|+++.|.+        ..+|..+.                    .+++|+.|.+..|.+-
T Consensus       113 nl~e~~lpgn-ff~m~tlralyl~dndf--------e~lp~dvg--------------------~lt~lqil~lrdndll  163 (264)
T KOG0617|consen  113 NLNENSLPGN-FFYMTTLRALYLGDNDF--------EILPPDVG--------------------KLTNLQILSLRDNDLL  163 (264)
T ss_pred             ccccccCCcc-hhHHHHHHHHHhcCCCc--------ccCChhhh--------------------hhcceeEEeeccCchh
Confidence            986 357766 66788899998887532        22333222                    2677788888888777


Q ss_pred             cccchhhcCCCCce---eee----cCCccccCCC---CCCEEeccCCcceecCC
Q 045166          162 GAIPASIANLKGLQ---FSG----RIPQQLAELT---FLAFFNVSDNYLTGPIP  205 (305)
Q Consensus       162 g~~p~~~~~L~~L~---l~g----~ip~~l~~l~---~L~~L~Ls~N~l~g~ip  205 (305)
                       .+|.+++.|..|+   +.|    .+|++++++.   +=+.+.+.+|.+-.+|.
T Consensus       164 -~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~pIa  216 (264)
T KOG0617|consen  164 -SLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWVNPIA  216 (264)
T ss_pred             -hCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCCChHH
Confidence             7787777766655   333    4666666543   22345566676654443

>PLN03210 Resistant to P

Probab=99.54  E-value=6e-14  Score=142.44  Aligned_cols=101  Identities=17%  Similarity=0.147  Sum_probs=56.3

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD   81 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~   81 (305)
                      .|++.+|.+. .+|..| .+.+|+.|++++|++.. +|..+..+++|++|+|+++.....+|. +  +.+++|+.|++++
T Consensus       593 ~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-l--s~l~~Le~L~L~~  666 (1153)
T PLN03210        593 LLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIPD-L--SMATNLETLKLSD  666 (1153)
T ss_pred             EEEecCCCCC-CCCCcC-CccCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCCc-c--ccCCcccEEEecC
Confidence            3444455443 445444 34566666666666654 555555666666666665544344443 3  4556666666666


Q ss_pred             CcccccCChhhhhCcccchhccCccccc
Q 045166           82 NRFTGKLPSNSFLCWNAMKIVNTSALRY  109 (305)
Q Consensus        82 N~l~g~lp~~~~~~l~~L~~L~l~~~~~  109 (305)
                      |.....+|.. +..+++|+.|++++|..
T Consensus       667 c~~L~~lp~s-i~~L~~L~~L~L~~c~~  693 (1153)
T PLN03210        667 CSSLVELPSS-IQYLNKLEDLDMSRCEN  693 (1153)
T ss_pred             CCCccccchh-hhccCCCCEEeCCCCCC
Confidence            5444456644 56666666666665433

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.53  E-value=2.4e-14  Score=136.95  Aligned_cols=181  Identities=20%  Similarity=0.196  Sum_probs=96.1

Q ss_pred             CEEEcccCccccccChhhhc-----------------CCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeC
Q 045166            1 MFYLRNENTFLQRIPRSLIN-----------------CSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIE   63 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~-----------------l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p   63 (305)
                      ++|+|++|+|+ .+|....+                 .++|+.|++++|+++. +|.   ..++|+.|++++|++++ +|
T Consensus       245 k~LdLs~N~Lt-sLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp  318 (788)
T PRK15387        245 RTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LP  318 (788)
T ss_pred             cEEEecCCccC-cccCcccccceeeccCCchhhhhhchhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CC
Confidence            46777777777 34432211                 1345556666666654 443   23678888888888875 44


Q ss_pred             CCCCCCC-----------------CCCccEEeCCCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccc
Q 045166           64 EPRTSCG-----------------FSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLG  126 (305)
Q Consensus        64 ~~~~~~~-----------------l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  126 (305)
                      ...  ..                 ..+|++|++++|+|+ .+|..    ..+|+.|++++|.... .+    ..+..   
T Consensus       319 ~lp--~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~-LP----~l~~~---  383 (788)
T PRK15387        319 ALP--SELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS-LP----ALPSG---  383 (788)
T ss_pred             CCc--ccccccccccCccccccccccccceEecCCCccC-CCCCC----Ccccceehhhcccccc-Cc----ccccc---
Confidence            321  11                 013455555555555 34421    1234444444432111 00    01111   


Q ss_pred             cccccccccccCcccccccccccccEEEccCCccccccchhhcCCCCceee----ecCCccccCCCCCCEEeccCCccee
Q 045166          127 TYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFS----GRIPQQLAELTFLAFFNVSDNYLTG  202 (305)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~----g~ip~~l~~l~~L~~L~Ls~N~l~g  202 (305)
                        +..+++..+.+. .+....++|+.||+++|+|+ .+|....+|..|.++    ..+|..+.++++|+.|+|++|+|+|
T Consensus       384 --L~~LdLs~N~Lt-~LP~l~s~L~~LdLS~N~Ls-sIP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        384 --LKELIVSGNRLT-SLPVLPSELKELMVSGNRLT-SLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             --cceEEecCCccc-CCCCcccCCCEEEccCCcCC-CCCcchhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCc
Confidence              122222333222 12223456778888888887 567655555555432    2578778888888888888888887


Q ss_pred             cCCC
Q 045166          203 PIPQ  206 (305)
Q Consensus       203 ~ip~  206 (305)
                      .+|.
T Consensus       460 ~~~~  463 (788)
T PRK15387        460 RTLQ  463 (788)
T ss_pred             hHHH
Confidence            7664

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.50  E-value=4.4e-14  Score=135.64  Aligned_cols=93  Identities=20%  Similarity=0.281  Sum_probs=63.2

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      +.|+|++|+++ .+|..+.  ++|++|++++|+++. +|..+.  .+|+.|+|++|.+. .+|..+  .  .+|+.|+++
T Consensus       202 ~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l--~--s~L~~L~Ls  270 (754)
T PRK15370        202 TTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERL--P--SALQSLDLF  270 (754)
T ss_pred             cEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhH--h--CCCCEEECc
Confidence            36888889888 5666554  578888888888875 676543  46777777777776 456544  2  467777777


Q ss_pred             CCcccccCChhhhhCcccchhccCcccc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALR  108 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~  108 (305)
                      +|+++ .+|.. +.  ++|+.|++++|+
T Consensus       271 ~N~L~-~LP~~-l~--~sL~~L~Ls~N~  294 (754)
T PRK15370        271 HNKIS-CLPEN-LP--EELRYLSVYDNS  294 (754)
T ss_pred             CCccC-ccccc-cC--CCCcEEECCCCc
Confidence            77777 56654 21  466777776653

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.49  E-value=5.6e-14  Score=134.95  Aligned_cols=92  Identities=21%  Similarity=0.239  Sum_probs=57.3

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD   81 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~   81 (305)
                      .|+++++.++ .+|..+.  ++|+.|+|++|.++. +|..+.  ++|++|++++|+++. +|..+    ..+|+.|++++
T Consensus       182 ~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lts-LP~~l----~~~L~~L~Ls~  250 (754)
T PRK15370        182 ELRLKILGLT-TIPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTS-IPATL----PDTIQEMELSI  250 (754)
T ss_pred             EEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCcccc-CChhh----hccccEEECcC
Confidence            4667777766 4555442  467777777777775 565543  467777777777763 45443    23577777777


Q ss_pred             CcccccCChhhhhCcccchhccCcccc
Q 045166           82 NRFTGKLPSNSFLCWNAMKIVNTSALR  108 (305)
Q Consensus        82 N~l~g~lp~~~~~~l~~L~~L~l~~~~  108 (305)
                      |++. .+|.. +.  .+|+.|++++|+
T Consensus       251 N~L~-~LP~~-l~--s~L~~L~Ls~N~  273 (754)
T PRK15370        251 NRIT-ELPER-LP--SALQSLDLFHNK  273 (754)
T ss_pred             CccC-cCChh-Hh--CCCCEEECcCCc
Confidence            7776 66654 22  356667776643

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.48  E-value=9.6e-14  Score=132.87  Aligned_cols=193  Identities=21%  Similarity=0.255  Sum_probs=115.3

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEE--------------------ccccccee
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLI--------------------LRSNIFYG   60 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~--------------------L~~N~l~~   60 (305)
                      +.|++++|+++ .+|.   .+++|++|++++|+++. +|...   ++|+.|+                    +++|+++.
T Consensus       225 ~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lts-LP~lp---~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~  296 (788)
T PRK15387        225 TTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPVLP---PGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTS  296 (788)
T ss_pred             CEEEccCCcCC-CCCC---CCCCCcEEEecCCccCc-ccCcc---cccceeeccCCchhhhhhchhhcCEEECcCCcccc
Confidence            36899999999 5775   36899999999999986 66432   3444554                    44444442


Q ss_pred             eeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCc-----------------ccchhccCcccccccccccCCCCcCCC
Q 045166           61 IIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCW-----------------NAMKIVNTSALRYLQDVLFPYGQVSSN  123 (305)
Q Consensus        61 ~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l-----------------~~L~~L~l~~~~~~~~~~~~~~~~~~~  123 (305)
                       +|.     ..++|+.|++++|+++ .+|.. ...+                 .+|+.|++++|++.. .    ..++.+
T Consensus       297 -LP~-----~p~~L~~LdLS~N~L~-~Lp~l-p~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-L----P~lp~~  363 (788)
T PRK15387        297 -LPV-----LPPGLQELSVSDNQLA-SLPAL-PSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-L----PTLPSE  363 (788)
T ss_pred             -ccc-----cccccceeECCCCccc-cCCCC-cccccccccccCccccccccccccceEecCCCccCC-C----CCCCcc
Confidence             232     2367999999999998 56641 1111                 134444444432221 0    011111


Q ss_pred             ccccccccccccccCcccccccccccccEEEccCCccccccchhhcCCCCceeee----cCCccccCCCCCCEEeccCCc
Q 045166          124 VLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSG----RIPQQLAELTFLAFFNVSDNY  199 (305)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~g----~ip~~l~~l~~L~~L~Ls~N~  199 (305)
                      +..     +.+..+.+. .+...+.+|+.|++++|+|+ .+|....+|..|.+++    .+|..   ..+|+.|++++|+
T Consensus       364 L~~-----L~Ls~N~L~-~LP~l~~~L~~LdLs~N~Lt-~LP~l~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~Nq  433 (788)
T PRK15387        364 LYK-----LWAYNNRLT-SLPALPSGLKELIVSGNRLT-SLPVLPSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQ  433 (788)
T ss_pred             cce-----ehhhccccc-cCcccccccceEEecCCccc-CCCCcccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCc
Confidence            111     112222221 12223456888888888888 5776666666666444    34542   2457788899999


Q ss_pred             ceecCCCC-CCCCccCCCccCCCCCCC
Q 045166          200 LTGPIPQG-KQFATFDNTSFDGNSGLC  225 (305)
Q Consensus       200 l~g~ip~~-~~~~~l~~~~~~gNp~lc  225 (305)
                      |+ .+|.. ..+..+..+++++|+.-.
T Consensus       434 Lt-~LP~sl~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        434 LT-RLPESLIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             cc-ccChHHhhccCCCeEECCCCCCCc
Confidence            88 56754 456677788899998643

>PLN03210 Resistant to P

Probab=99.45  E-value=7.7e-13  Score=134.45  Aligned_cols=63  Identities=24%  Similarity=0.125  Sum_probs=36.6

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEE   64 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~   64 (305)
                      ++|+|+++...+.+|. ++.+++|+.|++++|.....+|..++.+++|+.|++++|.....+|.
T Consensus       637 k~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~  699 (1153)
T PLN03210        637 RNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT  699 (1153)
T ss_pred             CEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC
Confidence            3566666554445553 56666666666666654445666666666666666666543334444

syringae 6; Provisional

>PLN03150 hypothetical protein; Provisional

Probab=99.45  E-value=1.3e-13  Score=131.32  Aligned_cols=103  Identities=25%  Similarity=0.325  Sum_probs=90.0

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD   81 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~   81 (305)
                      .|+|++|.+.|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..+  +.+++|++|+|++
T Consensus       422 ~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l--~~L~~L~~L~Ls~  499 (623)
T PLN03150        422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL--GQLTSLRILNLNG  499 (623)
T ss_pred             EEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH--hcCCCCCEEECcC
Confidence            58999999999999999999999999999999999999999999999999999999999999988  8999999999999


Q ss_pred             CcccccCChhhhhC-cccchhccCccc
Q 045166           82 NRFTGKLPSNSFLC-WNAMKIVNTSAL  107 (305)
Q Consensus        82 N~l~g~lp~~~~~~-l~~L~~L~l~~~  107 (305)
                      |+++|.+|.. +.. ..++..+++.+|
T Consensus       500 N~l~g~iP~~-l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        500 NSLSGRVPAA-LGGRLLHRASFNFTDN  525 (623)
T ss_pred             CcccccCChH-HhhccccCceEEecCC
Confidence            9999999976 443 234455555543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.37  E-value=6.3e-14  Score=125.67  Aligned_cols=165  Identities=19%  Similarity=0.208  Sum_probs=85.9

Q ss_pred             EEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCC
Q 045166            3 YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDN   82 (305)
Q Consensus         3 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N   82 (305)
                      .||+.|++. ++|..++.+..|+.+.|.+|.+.- +|..++++..|++|||+.|+++ .+|..+  |.|+ |+.|-+++|
T Consensus        80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS-~lp~~l--C~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS-HLPDGL--CDLP-LKVLIVSNN  153 (722)
T ss_pred             hhccccccc-cCchHHHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh-cCChhh--hcCc-ceeEEEecC
Confidence            466666665 566655555555555555555543 5555555555555555555554 244444  4444 555555555


Q ss_pred             cccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccc-ccccccc---ccCcccccccccccccEEEccCC
Q 045166           83 RFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTY-DYSRTMN---SKGRVMTYNKIPNILAGIILSNN  158 (305)
Q Consensus        83 ~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~L~~LdLs~N  158 (305)
                      +++ .+|.+ ++.+..|..|+.+.|+...        +|+.+..+. +..+.+.   ...++.+..  .-.|..||+|+|
T Consensus       154 kl~-~lp~~-ig~~~tl~~ld~s~nei~s--------lpsql~~l~slr~l~vrRn~l~~lp~El~--~LpLi~lDfScN  221 (722)
T KOG0532|consen  154 KLT-SLPEE-IGLLPTLAHLDVSKNEIQS--------LPSQLGYLTSLRDLNVRRNHLEDLPEELC--SLPLIRLDFSCN  221 (722)
T ss_pred             ccc-cCCcc-cccchhHHHhhhhhhhhhh--------chHHhhhHHHHHHHHHhhhhhhhCCHHHh--CCceeeeecccC
Confidence            555 55554 4455555555555432221        111111100 0000000   001111111  123778888888


Q ss_pred             ccccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCccee
Q 045166          159 RFDGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTG  202 (305)
Q Consensus       159 ~l~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g  202 (305)
                      +++                 .||-.|.+|..|++|-|.+|.|+.
T Consensus       222 kis-----------------~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  222 KIS-----------------YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             cee-----------------ecchhhhhhhhheeeeeccCCCCC
Confidence            888                 455666777888888888888874

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.34  E-value=2.7e-14  Score=128.05  Aligned_cols=183  Identities=22%  Similarity=0.344  Sum_probs=140.0

Q ss_pred             EEcccCccccccChhh--hcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            3 YLRNENTFLQRIPRSL--INCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         3 L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      |.|++-++. .+|..=  -.++--...||+.|++.. +|..++.+..|+.+.|..|.+. .+|..+  +.+..|.+||++
T Consensus        55 l~Ls~rrlk-~fpr~a~~~~ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i--~~L~~lt~l~ls  129 (722)
T KOG0532|consen   55 LLLSGRRLK-EFPRGAASYDLTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAI--CNLEALTFLDLS  129 (722)
T ss_pred             cccccchhh-cCCCccccccccchhhhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhh--hhhhHHHHhhhc
Confidence            556666666 444321  345556778999999987 9999999999999999999996 588888  999999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF  160 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l  160 (305)
                      .|+++ .+|.. +. .--|+.|.+++|+... .       |.                   .+ +.+..|..||.|.|.+
T Consensus       130 ~NqlS-~lp~~-lC-~lpLkvli~sNNkl~~-l-------p~-------------------~i-g~~~tl~~ld~s~nei  178 (722)
T KOG0532|consen  130 SNQLS-HLPDG-LC-DLPLKVLIVSNNKLTS-L-------PE-------------------EI-GLLPTLAHLDVSKNEI  178 (722)
T ss_pred             cchhh-cCChh-hh-cCcceeEEEecCcccc-C-------Cc-------------------cc-ccchhHHHhhhhhhhh
Confidence            99999 89976 33 3457777777754322 1       11                   11 1367788999999999


Q ss_pred             ccccchhhcCCCCce-------eeecCCccccCCCCCCEEeccCCcceecCCC-CCCCCccCCCccCCCCCC
Q 045166          161 DGAIPASIANLKGLQ-------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQ-GKQFATFDNTSFDGNSGL  224 (305)
Q Consensus       161 ~g~~p~~~~~L~~L~-------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~-~~~~~~l~~~~~~gNp~l  224 (305)
                      . .+|..++.+.+|.       -.-.+|+++..|+ |..||+|+|+++ .||. ...+..+..+.++.||..
T Consensus       179 ~-slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  179 Q-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             h-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            9 8999999888887       1225788888665 999999999999 5664 356777888889999854

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.29  E-value=2.3e-13  Score=119.73  Aligned_cols=105  Identities=19%  Similarity=0.115  Sum_probs=67.1

Q ss_pred             EEEcccCccc------cccChhhhcCCCCCEEeccCcccccCcchhhcCCCC---CCEEEccccccee----eeCCCCCC
Q 045166            2 FYLRNENTFL------QRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPK---LNVLILRSNIFYG----IIEEPRTS   68 (305)
Q Consensus         2 ~L~Ls~N~l~------~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~---L~~L~L~~N~l~~----~~p~~~~~   68 (305)
                      +|+++++.+.      ..++..+..+++|+.|++++|.+.+..+..+..+.+   |++|++++|++++    .+...+  
T Consensus        55 ~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l--  132 (319)
T cd00116          55 ELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGL--  132 (319)
T ss_pred             EEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHH--
Confidence            5677777665      234456677788888888888887655555555544   8888888887762    111222  


Q ss_pred             CCC-CCccEEeCCCCcccccCCh---hhhhCcccchhccCcccc
Q 045166           69 CGF-SKLRIIDLSDNRFTGKLPS---NSFLCWNAMKIVNTSALR  108 (305)
Q Consensus        69 ~~l-~~L~~L~Ls~N~l~g~lp~---~~~~~l~~L~~L~l~~~~  108 (305)
                      ..+ ++|+.|++++|.+++....   ..+..+..|++|++++|.
T Consensus       133 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~  176 (319)
T cd00116         133 KDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG  176 (319)
T ss_pred             HhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence            344 6788888888887743221   124555677888877753

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.28  E-value=6.6e-13  Score=114.43  Aligned_cols=98  Identities=24%  Similarity=0.239  Sum_probs=79.4

Q ss_pred             EcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC-CCC
Q 045166            4 LRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL-SDN   82 (305)
Q Consensus         4 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L-s~N   82 (305)
                      |-++-.++ ++|..+-  ..-..++|..|+|+...|.+|+.+++|+.||||+|.++.+-|..|  .++++|..|-+ ++|
T Consensus        52 dCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF--~GL~~l~~Lvlyg~N  126 (498)
T KOG4237|consen   52 DCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAF--KGLASLLSLVLYGNN  126 (498)
T ss_pred             EccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhh--hhhHhhhHHHhhcCC
Confidence            33444455 5565432  345789999999999777789999999999999999999999988  89998766655 459


Q ss_pred             cccccCChhhhhCcccchhccCccc
Q 045166           83 RFTGKLPSNSFLCWNAMKIVNTSAL  107 (305)
Q Consensus        83 ~l~g~lp~~~~~~l~~L~~L~l~~~  107 (305)
                      +|+ .+|.+.|+++.+++.|.+.-|
T Consensus       127 kI~-~l~k~~F~gL~slqrLllNan  150 (498)
T KOG4237|consen  127 KIT-DLPKGAFGGLSSLQRLLLNAN  150 (498)
T ss_pred             chh-hhhhhHhhhHHHHHHHhcChh
Confidence            999 999999999999999887654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.28  E-value=2e-13  Score=128.62  Aligned_cols=213  Identities=18%  Similarity=0.179  Sum_probs=149.6

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      +.||+++|++. ..|..+..+.+|+.|+++.|.|.. +|.+...+.+|++|.|..|.+. ..|..+  ..+.+|++||+|
T Consensus        48 ~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~-vp~s~~~~~~l~~lnL~~n~l~-~lP~~~--~~lknl~~LdlS  122 (1081)
T KOG0618|consen   48 KSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRS-VPSSCSNMRNLQYLNLKNNRLQ-SLPASI--SELKNLQYLDLS  122 (1081)
T ss_pred             EEeeccccccc-cCCchhhhHHHHhhcccchhhHhh-Cchhhhhhhcchhheeccchhh-cCchhH--Hhhhcccccccc
Confidence            46999999987 899999999999999999999986 8999999999999999999997 488888  889999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccC------------CCCcCCCccccccccccccccCcc--------
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFP------------YGQVSSNVLGTYDYSRTMNSKGRV--------  140 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~--------  140 (305)
                      +|++. .+|. ++..+..+..+++++|..+....-.            .+.++..+..+ ....++..+...        
T Consensus       123 ~N~f~-~~Pl-~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l-~~~ldLr~N~~~~~dls~~~  199 (1081)
T KOG0618|consen  123 FNHFG-PIPL-VIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNL-THQLDLRYNEMEVLDLSNLA  199 (1081)
T ss_pred             hhccC-CCch-hHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhh-heeeecccchhhhhhhhhcc
Confidence            99998 8995 4778888888888876222111000            00000000000 001111111100        


Q ss_pred             --------------------------c--------ccccccccccEEEccCCccccccchhhcCCCCce-------eeec
Q 045166          141 --------------------------M--------TYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ-------FSGR  179 (305)
Q Consensus       141 --------------------------~--------~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~-------l~g~  179 (305)
                                                .        .......+|+++|+|.|+++ .+|++++.+.+|+       ..-.
T Consensus       200 ~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~  278 (1081)
T KOG0618|consen  200 NLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVA  278 (1081)
T ss_pred             chhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEecccchhHHh
Confidence                                      0        00011456788888888888 7778888877777       1135


Q ss_pred             CCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCC
Q 045166          180 IPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNS  222 (305)
Q Consensus       180 ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp  222 (305)
                      +|..+...++|+.|++.+|.+.-..|...++..+..+++..|.
T Consensus       279 lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~  321 (1081)
T KOG0618|consen  279 LPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN  321 (1081)
T ss_pred             hHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence            6777777888888888888888555555567777777776663

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.23  E-value=8.8e-12  Score=113.14  Aligned_cols=99  Identities=27%  Similarity=0.298  Sum_probs=55.8

Q ss_pred             EEEcccCccccccChhhhcCC-CCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            2 FYLRNENTFLQRIPRSLINCS-KLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      .|++.+|.++ .+|.....+. +|+.|++++|++.. +|..+..+++|+.|++++|++.. +|...  +..++|+.|+++
T Consensus       120 ~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~~-l~~~~--~~~~~L~~L~ls  194 (394)
T COG4886         120 SLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLSD-LPKLL--SNLSNLNNLDLS  194 (394)
T ss_pred             EEecCCcccc-cCccccccchhhcccccccccchhh-hhhhhhccccccccccCCchhhh-hhhhh--hhhhhhhheecc
Confidence            3556666665 4555555553 66666666666654 54555666666666666666653 33332  245566666666


Q ss_pred             CCcccccCChhhhhCcccchhccCccc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSAL  107 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~  107 (305)
                      +|+++ .+|.. ......|+++.+++|
T Consensus       195 ~N~i~-~l~~~-~~~~~~L~~l~~~~N  219 (394)
T COG4886         195 GNKIS-DLPPE-IELLSALEELDLSNN  219 (394)
T ss_pred             CCccc-cCchh-hhhhhhhhhhhhcCC
Confidence            66666 56643 234444666665554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.15  E-value=7.1e-12  Score=110.25  Aligned_cols=107  Identities=17%  Similarity=0.046  Sum_probs=79.5

Q ss_pred             CEEEcccCcccc----ccChhhhcCCCCCEEeccCccccc------CcchhhcCCCCCCEEEcccccceeeeCCCCCCCC
Q 045166            1 MFYLRNENTFLQ----RIPRSLINCSKLEFLGLGINQISD------TFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCG   70 (305)
Q Consensus         1 ~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~   70 (305)
                      ++|+++++.++.    .++..+...++|+.|+++++.+.+      .++..+..+++|+.|++++|.+.+..+..+  ..
T Consensus        26 ~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--~~  103 (319)
T cd00116          26 QVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL--ES  103 (319)
T ss_pred             cEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH--HH
Confidence            468999999853    366677788899999999998873      244567788999999999999976554444  33


Q ss_pred             CC---CccEEeCCCCcccc----cCChhhhhCc-ccchhccCcccccc
Q 045166           71 FS---KLRIIDLSDNRFTG----KLPSNSFLCW-NAMKIVNTSALRYL  110 (305)
Q Consensus        71 l~---~L~~L~Ls~N~l~g----~lp~~~~~~l-~~L~~L~l~~~~~~  110 (305)
                      +.   +|++|++++|++++    .+.. .+..+ ++|+.|++++|...
T Consensus       104 l~~~~~L~~L~ls~~~~~~~~~~~l~~-~l~~~~~~L~~L~L~~n~l~  150 (319)
T cd00116         104 LLRSSSLQELKLNNNGLGDRGLRLLAK-GLKDLPPALEKLVLGRNRLE  150 (319)
T ss_pred             HhccCcccEEEeeCCccchHHHHHHHH-HHHhCCCCceEEEcCCCcCC
Confidence            44   49999999999973    1222 24556 88999999986543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.11  E-value=7.5e-11  Score=93.61  Aligned_cols=95  Identities=32%  Similarity=0.318  Sum_probs=27.4

Q ss_pred             cccCccccccChhhhcCCCCCEEeccCcccccCcchhhc-CCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCc
Q 045166            5 RNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLG-TLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNR   83 (305)
Q Consensus         5 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~   83 (305)
                      |..+.+. ..| .+.+..++++|+|++|.|+. + +.++ .+.+|+.|+|++|.++. ++ .+  ..++.|+.|++++|+
T Consensus         4 lt~~~i~-~~~-~~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l~-~l--~~L~~L~~L~L~~N~   75 (175)
T PF14580_consen    4 LTANMIE-QIA-QYNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-LE-GL--PGLPRLKTLDLSNNR   75 (175)
T ss_dssp             ------------------------------------S--TT-TT--EEE-TTS--S---T-T------TT--EEE--SS-
T ss_pred             ccccccc-ccc-cccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-cc-Cc--cChhhhhhcccCCCC
Confidence            3444444 333 35566788999999999986 4 3566 58899999999999986 33 45  678999999999999


Q ss_pred             ccccCChhhhhCcccchhccCcccc
Q 045166           84 FTGKLPSNSFLCWNAMKIVNTSALR  108 (305)
Q Consensus        84 l~g~lp~~~~~~l~~L~~L~l~~~~  108 (305)
                      ++ .++..+...+++|+.|++++|+
T Consensus        76 I~-~i~~~l~~~lp~L~~L~L~~N~   99 (175)
T PF14580_consen   76 IS-SISEGLDKNLPNLQELYLSNNK   99 (175)
T ss_dssp             ---S-CHHHHHH-TT--EEE-TTS-
T ss_pred             CC-ccccchHHhCCcCCEEECcCCc
Confidence            99 7765533467788888877754

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.10  E-value=1.1e-10  Score=76.39  Aligned_cols=61  Identities=31%  Similarity=0.468  Sum_probs=46.7

Q ss_pred             CCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcc
Q 045166           22 SKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRF   84 (305)
Q Consensus        22 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l   84 (305)
                      ++|++|++++|+++...+..|..+++|++|++++|.++...|..|  .++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f--~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAF--SNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTT--TTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHH--cCCCCCCEEeCcCCcC
Confidence            467788888888877444577778888888888888877766677  7788888888888765

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.08  E-value=2.8e-11  Score=96.08  Aligned_cols=102  Identities=25%  Similarity=0.270  Sum_probs=39.7

Q ss_pred             CEEEcccCccccccChhhh-cCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166            1 MFYLRNENTFLQRIPRSLI-NCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L   79 (305)
                      +.|+|++|.|+ .+ +.++ .+.+|+.||+++|.|+. ++ .+..+++|++|++++|+++. +.+.+. ..+++|+.|++
T Consensus        22 ~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~-~~lp~L~~L~L   95 (175)
T PF14580_consen   22 RELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS-ISEGLD-KNLPNLQELYL   95 (175)
T ss_dssp             ----------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHH-HH-TT--EEE-
T ss_pred             ccccccccccc-cc-cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc-cccchH-HhCCcCCEEEC
Confidence            46999999998 44 3565 58999999999999987 54 57889999999999999986 332220 25799999999


Q ss_pred             CCCcccccCCh-hhhhCcccchhccCccccc
Q 045166           80 SDNRFTGKLPS-NSFLCWNAMKIVNTSALRY  109 (305)
Q Consensus        80 s~N~l~g~lp~-~~~~~l~~L~~L~l~~~~~  109 (305)
                      ++|++. .+.. ..+..+++|+.|++.+|..
T Consensus        96 ~~N~I~-~l~~l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   96 SNNKIS-DLNELEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             TTS----SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred             cCCcCC-ChHHhHHHHcCCCcceeeccCCcc
Confidence            999998 4432 3367788999999888644

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.07  E-value=1.6e-11  Score=102.66  Aligned_cols=135  Identities=21%  Similarity=0.248  Sum_probs=94.9

Q ss_pred             hhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCcc
Q 045166           18 LINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWN   97 (305)
Q Consensus        18 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~   97 (305)
                      +.....|+++||++|.|+. +.++..-++.++.|++|+|.+... . .+  ..+++|+.||||+|.++ ++- ++-..+.
T Consensus       280 ~dTWq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v-~-nL--a~L~~L~~LDLS~N~Ls-~~~-Gwh~KLG  352 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTV-Q-NL--AELPQLQLLDLSGNLLA-ECV-GWHLKLG  352 (490)
T ss_pred             cchHhhhhhccccccchhh-hhhhhhhccceeEEeccccceeee-h-hh--hhcccceEeecccchhH-hhh-hhHhhhc
Confidence            3445678889999999886 777777888999999999988753 2 35  67889999999999888 555 4456677


Q ss_pred             cchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccccccchhhcCCCCceee
Q 045166           98 AMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFS  177 (305)
Q Consensus        98 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~  177 (305)
                      ++++|.++.|..-+ .                            +-...+-+|+.||+++|++. .+..           
T Consensus       353 NIKtL~La~N~iE~-L----------------------------SGL~KLYSLvnLDl~~N~Ie-~lde-----------  391 (490)
T KOG1259|consen  353 NIKTLKLAQNKIET-L----------------------------SGLRKLYSLVNLDLSSNQIE-ELDE-----------  391 (490)
T ss_pred             CEeeeehhhhhHhh-h----------------------------hhhHhhhhheeccccccchh-hHHH-----------
Confidence            78888877742211 0                            00112556888888888876 2211           


Q ss_pred             ecCCccccCCCCCCEEeccCCcceec
Q 045166          178 GRIPQQLAELTFLAFFNVSDNYLTGP  203 (305)
Q Consensus       178 g~ip~~l~~l~~L~~L~Ls~N~l~g~  203 (305)
                         -..++++|-|+++.|.+|.+.+.
T Consensus       392 ---V~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  392 ---VNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             ---hcccccccHHHHHhhcCCCcccc
Confidence               13467788888888888888743

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.04  E-value=1.5e-10  Score=105.07  Aligned_cols=154  Identities=27%  Similarity=0.260  Sum_probs=120.3

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      +.|++++|++. .+|..+..+++|+.|++++|+++. +|...+.+++|+.|++++|++.. +|...  .....|+.++++
T Consensus       143 ~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ls~N~i~~-l~~~~--~~~~~L~~l~~~  217 (394)
T COG4886         143 KELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKISD-LPPEI--ELLSALEELDLS  217 (394)
T ss_pred             ccccccccchh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhheeccCCcccc-Cchhh--hhhhhhhhhhhc
Confidence            36899999998 777889999999999999999997 77777789999999999999985 66654  345669999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF  160 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l  160 (305)
                      +|++. ..+.. +.++..+..+.+.+|.....                            ......++.++.|++++|.+
T Consensus       218 ~N~~~-~~~~~-~~~~~~l~~l~l~~n~~~~~----------------------------~~~~~~l~~l~~L~~s~n~i  267 (394)
T COG4886         218 NNSII-ELLSS-LSNLKNLSGLELSNNKLEDL----------------------------PESIGNLSNLETLDLSNNQI  267 (394)
T ss_pred             CCcce-ecchh-hhhcccccccccCCceeeec----------------------------cchhccccccceeccccccc
Confidence            99655 45544 77888888887666433210                            12223367799999999999


Q ss_pred             ccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCcceecCCCC
Q 045166          161 DGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG  207 (305)
Q Consensus       161 ~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~  207 (305)
                      + .+                +. ++.+.+++.|++++|.++...|..
T Consensus       268 ~-~i----------------~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         268 S-SI----------------SS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             c-cc----------------cc-ccccCccCEEeccCccccccchhh
Confidence            8 33                33 678889999999999998776654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=1.4e-10  Score=101.38  Aligned_cols=176  Identities=20%  Similarity=0.194  Sum_probs=114.6

Q ss_pred             hhhcCCCCCEEeccCcccccC--cchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhh
Q 045166           17 SLINCSKLEFLGLGINQISDT--FPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFL   94 (305)
Q Consensus        17 ~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~   94 (305)
                      ....|++++.|||++|-+..-  +-.....+++|+.|+|+.|++.....+... ..++.|+.|.|+.+.++..--..+..
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~-~~l~~lK~L~l~~CGls~k~V~~~~~  219 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT-LLLSHLKQLVLNSCGLSWKDVQWILL  219 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch-hhhhhhheEEeccCCCCHHHHHHHHH
Confidence            456788999999999988752  223345789999999999998754433322 35678899999999888554445567


Q ss_pred             CcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccccccc--hhhcCCC
Q 045166           95 CWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIP--ASIANLK  172 (305)
Q Consensus        95 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p--~~~~~L~  172 (305)
                      .+++|..|++..|+.....                           .....++..|+.|||++|++. ..+  ...+.++
T Consensus       220 ~fPsl~~L~L~~N~~~~~~---------------------------~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~  271 (505)
T KOG3207|consen  220 TFPSLEVLYLEANEIILIK---------------------------ATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLP  271 (505)
T ss_pred             hCCcHHHhhhhccccccee---------------------------cchhhhhhHHhhccccCCccc-cccccccccccc
Confidence            7889999988876322111                           111233677999999999887 444  3445555


Q ss_pred             Cce---e--ee----cCCcc-----ccCCCCCCEEeccCCcceecCCCCCC---CCccCCCccCCCC
Q 045166          173 GLQ---F--SG----RIPQQ-----LAELTFLAFFNVSDNYLTGPIPQGKQ---FATFDNTSFDGNS  222 (305)
Q Consensus       173 ~L~---l--~g----~ip~~-----l~~l~~L~~L~Ls~N~l~g~ip~~~~---~~~l~~~~~~gNp  222 (305)
                      .|+   +  +|    .+|+.     ...+++|++|+++.|++. .++...+   ..++..+.+.+|+
T Consensus       272 ~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  272 GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNY  337 (505)
T ss_pred             chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccc
Confidence            554   1  11    23333     456789999999999996 4444332   2333444444554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.99  E-value=3.5e-10  Score=74.04  Aligned_cols=58  Identities=28%  Similarity=0.301  Sum_probs=53.3

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccc
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIF   58 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l   58 (305)
                      ++|++++|+++...+..|.++++|++|++++|.++...|..|.++++|++|++++|++
T Consensus         4 ~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    4 ESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             SEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5799999999977678999999999999999999987777999999999999999975

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.82  E-value=7e-10  Score=93.00  Aligned_cols=126  Identities=19%  Similarity=0.158  Sum_probs=100.6

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD   81 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~   81 (305)
                      .||||+|.|+ .+.+++.-++.++.|++++|.+.. + +.+..+++|+.||||+|.++. +..+-  .++.+++.|.|+.
T Consensus       288 elDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls~-~~Gwh--~KLGNIKtL~La~  361 (490)
T KOG1259|consen  288 ELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLAE-CVGWH--LKLGNIKTLKLAQ  361 (490)
T ss_pred             hccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhHh-hhhhH--hhhcCEeeeehhh
Confidence            5899999998 888888889999999999999985 3 358899999999999999985 44444  6788999999999


Q ss_pred             CcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccc
Q 045166           82 NRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFD  161 (305)
Q Consensus        82 N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~  161 (305)
                      |.+. .+. + ++.+-+|..|++++|+.-....                          ...++.++.|+.+.|.+|.+.
T Consensus       362 N~iE-~LS-G-L~KLYSLvnLDl~~N~Ie~lde--------------------------V~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  362 NKIE-TLS-G-LRKLYSLVNLDLSSNQIEELDE--------------------------VNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhHh-hhh-h-hHhhhhheeccccccchhhHHH--------------------------hcccccccHHHHHhhcCCCcc
Confidence            9998 665 4 7888999999998864322110                          011233778999999999998


Q ss_pred             c
Q 045166          162 G  162 (305)
Q Consensus       162 g  162 (305)
                      +
T Consensus       413 ~  413 (490)
T KOG1259|consen  413 G  413 (490)
T ss_pred             c
Confidence            4

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=8.4e-09  Score=90.52  Aligned_cols=179  Identities=18%  Similarity=0.086  Sum_probs=110.3

Q ss_pred             CEEEcccCccccc--cChhhhcCCCCCEEeccCcccccCcchhh-cCCCCCCEEEcccccceeeeCCCCCCCCCCCccEE
Q 045166            1 MFYLRNENTFLQR--IPRSLINCSKLEFLGLGINQISDTFPSWL-GTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRII   77 (305)
Q Consensus         1 ~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L   77 (305)
                      +.||||.|-|...  +-.....+++|+.|+|+.|.+.-...... ..++.|+.|.|+.|.++..--.... ..+|+|+.|
T Consensus       149 ~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~-~~fPsl~~L  227 (505)
T KOG3207|consen  149 RDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWIL-LTFPSLEVL  227 (505)
T ss_pred             eeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHH-HhCCcHHHh
Confidence            4689999998843  33445679999999999999875332222 2578899999999988742211111 467899999


Q ss_pred             eCCCCcccccCChhhhhCcccchhccCcccccccccccCC-CCcCCCccccccccccccccCccc---------cccccc
Q 045166           78 DLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPY-GQVSSNVLGTYDYSRTMNSKGRVM---------TYNKIP  147 (305)
Q Consensus        78 ~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~  147 (305)
                      +|..|...+.-. .....+..|+.|++++|+.+....++. +.+|.      +..+.++.+++..         .....+
T Consensus       228 ~L~~N~~~~~~~-~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~------L~~Lnls~tgi~si~~~d~~s~~kt~~f  300 (505)
T KOG3207|consen  228 YLEANEIILIKA-TSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG------LNQLNLSSTGIASIAEPDVESLDKTHTF  300 (505)
T ss_pred             hhhcccccceec-chhhhhhHHhhccccCCcccccccccccccccc------hhhhhccccCcchhcCCCccchhhhccc
Confidence            999885332222 225567789999999987766543222 22211      1122222233221         112347


Q ss_pred             ccccEEEccCCccccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCccee
Q 045166          148 NILAGIILSNNRFDGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTG  202 (305)
Q Consensus       148 ~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g  202 (305)
                      ++|++|+++.|++. ..+. +             ..+..+++|+.|....|.|+.
T Consensus       301 ~kL~~L~i~~N~I~-~w~s-l-------------~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  301 PKLEYLNISENNIR-DWRS-L-------------NHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             ccceeeecccCccc-cccc-c-------------chhhccchhhhhhcccccccc
Confidence            78999999999886 3221 1             223445667777777777763

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.54  E-value=3.4e-08  Score=90.20  Aligned_cols=82  Identities=24%  Similarity=0.266  Sum_probs=42.5

Q ss_pred             hhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCcc
Q 045166           18 LINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWN   97 (305)
Q Consensus        18 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~   97 (305)
                      +..+++|+.|++..|+|.+ +...+..+++|++|++++|.++...  .+  ..++.|+.|++++|.++ .+..  +..++
T Consensus        91 l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l--~~l~~L~~L~l~~N~i~-~~~~--~~~l~  162 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GL--STLTLLKELNLSGNLIS-DISG--LESLK  162 (414)
T ss_pred             cccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--ch--hhccchhhheeccCcch-hccC--Cccch
Confidence            4555555556666665554 3222445555566666666555433  22  34445555555555555 4442  44455


Q ss_pred             cchhccCccc
Q 045166           98 AMKIVNTSAL  107 (305)
Q Consensus        98 ~L~~L~l~~~  107 (305)
                      .|+.+++++|
T Consensus       163 ~L~~l~l~~n  172 (414)
T KOG0531|consen  163 SLKLLDLSYN  172 (414)
T ss_pred             hhhcccCCcc
Confidence            5555555553

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.43  E-value=2.9e-08  Score=90.64  Aligned_cols=82  Identities=28%  Similarity=0.275  Sum_probs=49.7

Q ss_pred             cCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCcccc
Q 045166           20 NCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAM   99 (305)
Q Consensus        20 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L   99 (305)
                      .+..++.+++..|.+.. +-..+..+++|+.|++..|++.... ..+  ..+++|++||+++|.|+ .+..  +..+..|
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l--~~~~~L~~L~ls~N~I~-~i~~--l~~l~~L  142 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLL--SSLVNLQVLDLSFNKIT-KLEG--LSTLTLL  142 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cch--hhhhcchheeccccccc-cccc--hhhccch
Confidence            45556666667776654 2233556677777777777776533 213  45677777777777776 4442  5556667


Q ss_pred             hhccCcccc
Q 045166          100 KIVNTSALR  108 (305)
Q Consensus       100 ~~L~l~~~~  108 (305)
                      +.|++++|.
T Consensus       143 ~~L~l~~N~  151 (414)
T KOG0531|consen  143 KELNLSGNL  151 (414)
T ss_pred             hhheeccCc
Confidence            777766643

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.41  E-value=9.7e-09  Score=95.38  Aligned_cols=97  Identities=24%  Similarity=0.233  Sum_probs=78.8

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD   81 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~   81 (305)
                      +.++++|.+. .+..++.-++.|+.|||++|+++. +. .+..+++|++|||++|.+.. +|. ++..++. |+.|.+.+
T Consensus       168 ~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~~-vp~-l~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  168 TASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLRH-VPQ-LSMVGCK-LQLLNLRN  241 (1096)
T ss_pred             hhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhcc-ccc-cchhhhh-heeeeecc
Confidence            3567889988 778888889999999999999986 33 78899999999999999975 443 2224444 99999999


Q ss_pred             CcccccCChhhhhCcccchhccCccc
Q 045166           82 NRFTGKLPSNSFLCWNAMKIVNTSAL  107 (305)
Q Consensus        82 N~l~g~lp~~~~~~l~~L~~L~l~~~  107 (305)
                      |.++ ++- + +.++.+|+.||++.|
T Consensus       242 N~l~-tL~-g-ie~LksL~~LDlsyN  264 (1096)
T KOG1859|consen  242 NALT-TLR-G-IENLKSLYGLDLSYN  264 (1096)
T ss_pred             cHHH-hhh-h-HHhhhhhhccchhHh
Confidence            9998 665 4 788999999999885

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.36  E-value=5e-07  Score=54.49  Aligned_cols=38  Identities=42%  Similarity=0.538  Sum_probs=24.3

Q ss_pred             CCCCEEeccCcccccCcchhhcCCCCCCEEEccccccee
Q 045166           22 SKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYG   60 (305)
Q Consensus        22 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~   60 (305)
                      ++|++|++++|+|+. +|+.+++|++|++|++++|+++.
T Consensus         1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCC
Confidence            356777777777765 66666777777777777776653

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.19  E-value=1.2e-07  Score=88.32  Aligned_cols=99  Identities=19%  Similarity=0.194  Sum_probs=79.7

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchh-hcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSW-LGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L   79 (305)
                      ++|||++|+++. .. .+..|++|+.|||++|.+.. +|.. ..++. |+.|.+++|.++...  .+  .++.+|+.||+
T Consensus       190 e~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~~L~lrnN~l~tL~--gi--e~LksL~~LDl  261 (1096)
T KOG1859|consen  190 ESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQLLNLRNNALTTLR--GI--ENLKSLYGLDL  261 (1096)
T ss_pred             hhhccchhhhhh-hH-HHHhcccccccccccchhcc-ccccchhhhh-heeeeecccHHHhhh--hH--Hhhhhhhccch
Confidence            469999999984 33 88999999999999999986 7753 22444 999999999998644  44  78999999999


Q ss_pred             CCCcccccCChhhhhCcccchhccCccc
Q 045166           80 SDNRFTGKLPSNSFLCWNAMKIVNTSAL  107 (305)
Q Consensus        80 s~N~l~g~lp~~~~~~l~~L~~L~l~~~  107 (305)
                      ++|-+.+.---..++.+..|+.|.+.+|
T Consensus       262 syNll~~hseL~pLwsLs~L~~L~LeGN  289 (1096)
T KOG1859|consen  262 SYNLLSEHSELEPLWSLSSLIVLWLEGN  289 (1096)
T ss_pred             hHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence            9999985433344677888999999886

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.15  E-value=2.2e-06  Score=51.65  Aligned_cols=35  Identities=34%  Similarity=0.327  Sum_probs=31.5

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCccccc
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISD   36 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~   36 (305)
                      ++|++++|+|+ .+|+.+++|++|++|++++|+++.
T Consensus         4 ~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    4 EELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             eEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            58999999999 678889999999999999999986

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.14  E-value=3.1e-06  Score=83.48  Aligned_cols=80  Identities=28%  Similarity=0.318  Sum_probs=45.8

Q ss_pred             CCCEEeccCcc--cccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCcccch
Q 045166           23 KLEFLGLGINQ--ISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMK  100 (305)
Q Consensus        23 ~L~~L~L~~N~--l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~  100 (305)
                      .|++|-+..|.  +....++.|..++.|++|||++|.=-+.+|..+  +++-+|++|++++..+. .+|.+ ++++..|.
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I--~~Li~LryL~L~~t~I~-~LP~~-l~~Lk~L~  621 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI--GELVHLRYLDLSDTGIS-HLPSG-LGNLKKLI  621 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH--hhhhhhhcccccCCCcc-ccchH-HHHHHhhh
Confidence            56666666654  333222334556666666666655555566655  55666666666666666 56655 66666666


Q ss_pred             hccCcc
Q 045166          101 IVNTSA  106 (305)
Q Consensus       101 ~L~l~~  106 (305)
                      +|++..
T Consensus       622 ~Lnl~~  627 (889)
T KOG4658|consen  622 YLNLEV  627 (889)
T ss_pred             eecccc
Confidence            666554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.11  E-value=2.9e-07  Score=68.78  Aligned_cols=99  Identities=17%  Similarity=0.232  Sum_probs=74.8

Q ss_pred             EEEcccCccccccChhh---hcCCCCCEEeccCcccccCcchhhc-CCCCCCEEEcccccceeeeCCCCCCCCCCCccEE
Q 045166            2 FYLRNENTFLQRIPRSL---INCSKLEFLGLGINQISDTFPSWLG-TLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRII   77 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~---~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L   77 (305)
                      .+||+.+++- -+++..   .....|+..+|++|.+.. +|+.|. ..+.+++|+|++|.+.. +|..+  ..++.|+.|
T Consensus        31 ~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neisd-vPeE~--Aam~aLr~l  105 (177)
T KOG4579|consen   31 FLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEISD-VPEEL--AAMPALRSL  105 (177)
T ss_pred             hcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhhh-chHHH--hhhHHhhhc
Confidence            3677777765 455544   445667777999999987 777776 45688999999999974 78777  889999999


Q ss_pred             eCCCCcccccCChhhhhCcccchhccCccc
Q 045166           78 DLSDNRFTGKLPSNSFLCWNAMKIVNTSAL  107 (305)
Q Consensus        78 ~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~  107 (305)
                      ++++|.+. ..|.- +..+.++-.|+..+|
T Consensus       106 Nl~~N~l~-~~p~v-i~~L~~l~~Lds~~n  133 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRV-IAPLIKLDMLDSPEN  133 (177)
T ss_pred             ccccCccc-cchHH-HHHHHhHHHhcCCCC
Confidence            99999998 77865 555777777776654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.11  E-value=3e-07  Score=68.71  Aligned_cols=86  Identities=26%  Similarity=0.347  Sum_probs=74.0

Q ss_pred             EEEcccCccccccChhhh-cCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            2 FYLRNENTFLQRIPRSLI-NCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ..+|++|.+. .+|+.|. ..+.++.|++++|+|+. +|..+..++.|+.|+++.|.+.. .|..+  ..+.++-+||..
T Consensus        57 ~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N~l~~-~p~vi--~~L~~l~~Lds~  131 (177)
T KOG4579|consen   57 KISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNLRFNPLNA-EPRVI--APLIKLDMLDSP  131 (177)
T ss_pred             EEecccchhh-hCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcccccCcccc-chHHH--HHHHhHHHhcCC
Confidence            3689999998 6676665 46789999999999998 99999999999999999999975 67777  568999999999


Q ss_pred             CCcccccCChhhh
Q 045166           81 DNRFTGKLPSNSF   93 (305)
Q Consensus        81 ~N~l~g~lp~~~~   93 (305)
                      +|.+. ++|-+.|
T Consensus       132 ~na~~-eid~dl~  143 (177)
T KOG4579|consen  132 ENARA-EIDVDLF  143 (177)
T ss_pred             CCccc-cCcHHHh
Confidence            99998 8887643

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.94  E-value=6.9e-07  Score=76.61  Aligned_cols=106  Identities=19%  Similarity=0.135  Sum_probs=61.6

Q ss_pred             CEEEcccCccccccChh----hhcCCCCCEEeccCcccccCcc-------------hhhcCCCCCCEEEcccccceeee-
Q 045166            1 MFYLRNENTFLQRIPRS----LINCSKLEFLGLGINQISDTFP-------------SWLGTLPKLNVLILRSNIFYGII-   62 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~~~~p-------------~~~~~l~~L~~L~L~~N~l~~~~-   62 (305)
                      ++||||.|.|...-+..    +..++.|+.|.|.+|.+...--             .....-+.|++++.++|++...- 
T Consensus        95 ~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga  174 (382)
T KOG1909|consen   95 QKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGA  174 (382)
T ss_pred             eEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccH
Confidence            36788888876544443    3457778888888877652111             11233466778887777764211 


Q ss_pred             ---CCCCCCCCCCCccEEeCCCCccccc---CChhhhhCcccchhccCcccc
Q 045166           63 ---EEPRTSCGFSKLRIIDLSDNRFTGK---LPSNSFLCWNAMKIVNTSALR  108 (305)
Q Consensus        63 ---p~~~~~~~l~~L~~L~Ls~N~l~g~---lp~~~~~~l~~L~~L~l~~~~  108 (305)
                         ...+  ...+.|+.+.++.|.|.-.   +-...+..++.|++|++..|.
T Consensus       175 ~~~A~~~--~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt  224 (382)
T KOG1909|consen  175 TALAEAF--QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT  224 (382)
T ss_pred             HHHHHHH--HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch
Confidence               0112  3446677777777766411   111236677788888887753

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.90  E-value=5.3e-06  Score=69.99  Aligned_cols=88  Identities=22%  Similarity=0.203  Sum_probs=66.3

Q ss_pred             cCCCCCEEeccCccccc--CcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCcc
Q 045166           20 NCSKLEFLGLGINQISD--TFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWN   97 (305)
Q Consensus        20 ~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~   97 (305)
                      .++.++.|||..|+|+.  .+-..+.++|.|++|+|+.|.+...|...-  ..+.+|+.|-|.+..+.+.-....+..++
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~~nl~~lVLNgT~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPLKNLRVLVLNGTGLSWTQSTSSLDDLP  146 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--ccccceEEEEEcCCCCChhhhhhhhhcch
Confidence            46788999999999975  233334589999999999999876553321  24568999999888887766666678888


Q ss_pred             cchhccCccccc
Q 045166           98 AMKIVNTSALRY  109 (305)
Q Consensus        98 ~L~~L~l~~~~~  109 (305)
                      .++.|.++.|++
T Consensus       147 ~vtelHmS~N~~  158 (418)
T KOG2982|consen  147 KVTELHMSDNSL  158 (418)
T ss_pred             hhhhhhhccchh
Confidence            899998888643

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.87  E-value=5.5e-06  Score=81.72  Aligned_cols=85  Identities=19%  Similarity=0.205  Sum_probs=51.9

Q ss_pred             hhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCc
Q 045166           17 SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCW   96 (305)
Q Consensus        17 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l   96 (305)
                      .|..++.|++|||++|.=-+.+|..++.|-+|++|++++..+. .+|..+  .++..|.+||+..+.....+| +....+
T Consensus       566 ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l--~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L  641 (889)
T KOG4658|consen  566 FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGL--GNLKKLIYLNLEVTGRLESIP-GILLEL  641 (889)
T ss_pred             HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHH--HHHHhhheecccccccccccc-chhhhc
Confidence            3555666666666666555556666666666666666666665 356666  666666666666655543343 334556


Q ss_pred             ccchhccCc
Q 045166           97 NAMKIVNTS  105 (305)
Q Consensus        97 ~~L~~L~l~  105 (305)
                      .+|++|.+.
T Consensus       642 ~~Lr~L~l~  650 (889)
T KOG4658|consen  642 QSLRVLRLP  650 (889)
T ss_pred             ccccEEEee
Confidence            666666553

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=6.9e-07  Score=75.21  Aligned_cols=15  Identities=20%  Similarity=0.058  Sum_probs=11.9

Q ss_pred             cccccccEEEccCCc
Q 045166          145 KIPNILAGIILSNNR  159 (305)
Q Consensus       145 ~~~~~L~~LdLs~N~  159 (305)
                      ..+++|..||||+|.
T Consensus       310 ~rcp~l~~LDLSD~v  324 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSV  324 (419)
T ss_pred             HhCCceeeecccccc
Confidence            347889999999864

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.71  E-value=3.4e-05  Score=61.62  Aligned_cols=101  Identities=19%  Similarity=0.213  Sum_probs=57.1

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD   81 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~   81 (305)
                      .+||++|.+. .+ +.|..++.|.+|.+++|.|+..-|.--.-+++|+.|.|.+|.+... .+--....++.|++|.+-+
T Consensus        46 ~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l-~dl~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen   46 AIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL-GDLDPLASCPKLEYLTLLG  122 (233)
T ss_pred             eecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh-hhcchhccCCccceeeecC
Confidence            3566666665 22 2455666777777777777764444333456677777777766531 1111114566777777777


Q ss_pred             CcccccCCh---hhhhCcccchhccCcc
Q 045166           82 NRFTGKLPS---NSFLCWNAMKIVNTSA  106 (305)
Q Consensus        82 N~l~g~lp~---~~~~~l~~L~~L~l~~  106 (305)
                      |..+ .-..   -.+..+++|++||.+.
T Consensus       123 Npv~-~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  123 NPVE-HKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             Cchh-cccCceeEEEEecCcceEeehhh
Confidence            7665 2221   1245566666666654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.71  E-value=5.6e-05  Score=60.43  Aligned_cols=82  Identities=17%  Similarity=0.263  Sum_probs=58.0

Q ss_pred             CCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCCh-hhhhCcccc
Q 045166           21 CSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPS-NSFLCWNAM   99 (305)
Q Consensus        21 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~-~~~~~l~~L   99 (305)
                      +.+...+||++|.+.. + +.|..++.|.+|.|++|+++.+-|.--  .-+++|..|.|.+|++. .+-+ +-+..++.|
T Consensus        41 ~d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~--~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L  115 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLD--TFLPNLKTLILTNNSIQ-ELGDLDPLASCPKL  115 (233)
T ss_pred             ccccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchh--hhccccceEEecCcchh-hhhhcchhccCCcc
Confidence            4567788999998864 3 356788899999999999987655443  45678999999999887 4321 114556677


Q ss_pred             hhccCccc
Q 045166          100 KIVNTSAL  107 (305)
Q Consensus       100 ~~L~l~~~  107 (305)
                      +.|.+-+|
T Consensus       116 ~~Ltll~N  123 (233)
T KOG1644|consen  116 EYLTLLGN  123 (233)
T ss_pred             ceeeecCC
Confidence            77665443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.68  E-value=2.2e-05  Score=66.31  Aligned_cols=83  Identities=22%  Similarity=0.159  Sum_probs=60.8

Q ss_pred             EEEcccCcccc--ccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166            2 FYLRNENTFLQ--RIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL   79 (305)
Q Consensus         2 ~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L   79 (305)
                      .|||.+|.|+.  ++-..+.+|+.|++|+|++|+++..+-..-..+.+|++|.|.+..+...--.++. ..+|.++.|.+
T Consensus        75 elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l-~~lP~vtelHm  153 (418)
T KOG2982|consen   75 ELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSL-DDLPKVTELHM  153 (418)
T ss_pred             hhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhh-hcchhhhhhhh
Confidence            58999999984  4555667899999999999999864332214567899999988776543222221 57788899999


Q ss_pred             CCCccc
Q 045166           80 SDNRFT   85 (305)
Q Consensus        80 s~N~l~   85 (305)
                      |.|++.
T Consensus       154 S~N~~r  159 (418)
T KOG2982|consen  154 SDNSLR  159 (418)
T ss_pred             ccchhh
Confidence            999554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.63  E-value=1.7e-05  Score=68.27  Aligned_cols=83  Identities=22%  Similarity=0.125  Sum_probs=41.9

Q ss_pred             EEEcccCccccc----cChhhhcCCCCCEEeccCccccc----Ccchh-------hcCCCCCCEEEcccccceeeeCCCC
Q 045166            2 FYLRNENTFLQR----IPRSLINCSKLEFLGLGINQISD----TFPSW-------LGTLPKLNVLILRSNIFYGIIEEPR   66 (305)
Q Consensus         2 ~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~----~~p~~-------~~~l~~L~~L~L~~N~l~~~~p~~~   66 (305)
                      .++||+|.|...    +.+.+.+.++|+..+++.= ++|    .+|+.       +-.+++|++|+||.|-|.-.-+..+
T Consensus        34 ~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l  112 (382)
T KOG1909|consen   34 KLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGL  112 (382)
T ss_pred             EEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHH
Confidence            467777776532    3344455566666666542 222    23332       2244566666666666543222221


Q ss_pred             C--CCCCCCccEEeCCCCccc
Q 045166           67 T--SCGFSKLRIIDLSDNRFT   85 (305)
Q Consensus        67 ~--~~~l~~L~~L~Ls~N~l~   85 (305)
                      .  ..++..|+.|.|.+|-+.
T Consensus       113 ~~ll~s~~~L~eL~L~N~Glg  133 (382)
T KOG1909|consen  113 EELLSSCTDLEELYLNNCGLG  133 (382)
T ss_pred             HHHHHhccCHHHHhhhcCCCC
Confidence            0  023456666666666554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.59  E-value=2.7e-05  Score=75.08  Aligned_cols=142  Identities=18%  Similarity=0.262  Sum_probs=93.7

Q ss_pred             CCCCEEeccCccc-ccCcchhhc-CCCCCCEEEcccccceee-eCCCCCCCCCCCccEEeCCCCcccccCChhhhhCccc
Q 045166           22 SKLEFLGLGINQI-SDTFPSWLG-TLPKLNVLILRSNIFYGI-IEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNA   98 (305)
Q Consensus        22 ~~L~~L~L~~N~l-~~~~p~~~~-~l~~L~~L~L~~N~l~~~-~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~   98 (305)
                      .+|+.||+++.+. +...|..++ .+|+|+.|.+++=.+... +-.-.  .++++|..||+|+.+++ .+- + ++++++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc--~sFpNL~sLDIS~TnI~-nl~-G-IS~Lkn  196 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLC--ASFPNLRSLDISGTNIS-NLS-G-ISRLKN  196 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHh--hccCccceeecCCCCcc-CcH-H-Hhcccc
Confidence            6789999998764 333555566 589999999988655432 11122  57899999999999998 562 4 899999


Q ss_pred             chhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccccccchhhcCCCCceeee
Q 045166           99 MKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSG  178 (305)
Q Consensus        99 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~g  178 (305)
                      |+.|.+.+..+.....                         ..+.+ .+++|+.||+|..+.. ..+..+..        
T Consensus       197 Lq~L~mrnLe~e~~~~-------------------------l~~LF-~L~~L~vLDIS~~~~~-~~~~ii~q--------  241 (699)
T KOG3665|consen  197 LQVLSMRNLEFESYQD-------------------------LIDLF-NLKKLRVLDISRDKNN-DDTKIIEQ--------  241 (699)
T ss_pred             HHHHhccCCCCCchhh-------------------------HHHHh-cccCCCeeeccccccc-cchHHHHH--------
Confidence            9999987733221000                         00111 2889999999998766 22221110        


Q ss_pred             cCCccccCCCCCCEEeccCCcceecC
Q 045166          179 RIPQQLAELTFLAFFNVSDNYLTGPI  204 (305)
Q Consensus       179 ~ip~~l~~l~~L~~L~Ls~N~l~g~i  204 (305)
                       .-+.-..||.|+.||.|+..+...+
T Consensus       242 -Ylec~~~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  242 -YLECGMVLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             -HHHhcccCccccEEecCCcchhHHH
Confidence             0122345889999999988876543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.32  E-value=0.00081  Score=60.41  Aligned_cols=64  Identities=11%  Similarity=0.082  Sum_probs=39.7

Q ss_pred             hhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCC-cccccCCh
Q 045166           18 LINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDN-RFTGKLPS   90 (305)
Q Consensus        18 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N-~l~g~lp~   90 (305)
                      +..+.+++.|++++|.++. +|.   --.+|++|.++++.-...+|..+    .++|++|++++| .+. .+|.
T Consensus        48 ~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L----P~nLe~L~Ls~Cs~L~-sLP~  112 (426)
T PRK15386         48 IEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI----PEGLEKLTVCHCPEIS-GLPE  112 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh----hhhhhheEccCccccc-cccc
Confidence            3446778888888887765 562   12358888887643333455443    246788888877 554 5664

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.25  E-value=0.0019  Score=58.06  Aligned_cols=68  Identities=13%  Similarity=0.134  Sum_probs=47.9

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccC-cccccCcchhhcCCCCCCEEEcccc-cceeeeCCCCCCCCCCCccEEe
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGI-NQISDTFPSWLGTLPKLNVLILRSN-IFYGIIEEPRTSCGFSKLRIID   78 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~~~l~~L~~L~   78 (305)
                      ..|++++|.++ .+|.   -..+|+.|++++ +.++ .+|+.+.  ++|++|++++| .+. .+|.        +|+.|+
T Consensus        55 ~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~--------sLe~L~  118 (426)
T PRK15386         55 GRLYIKDCDIE-SLPV---LPNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPE--------SVRSLE  118 (426)
T ss_pred             CEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-cccc--------ccceEE
Confidence            36999999888 6672   245799999987 4443 4776553  68999999998 443 3443        467777


Q ss_pred             CCCCcc
Q 045166           79 LSDNRF   84 (305)
Q Consensus        79 Ls~N~l   84 (305)
                      ++.|..
T Consensus       119 L~~n~~  124 (426)
T PRK15386        119 IKGSAT  124 (426)
T ss_pred             eCCCCC
Confidence            877664

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.01  E-value=0.00024  Score=68.65  Aligned_cols=140  Identities=11%  Similarity=0.198  Sum_probs=91.7

Q ss_pred             CEEEcccCccc-cccChhhhc-CCCCCEEeccCcccccC-cchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEE
Q 045166            1 MFYLRNENTFL-QRIPRSLIN-CSKLEFLGLGINQISDT-FPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRII   77 (305)
Q Consensus         1 ~~L~Ls~N~l~-~~~p~~~~~-l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L   77 (305)
                      ++||+++.... ..-|..++. +++|+.|.+.+-.+... +-....++++|..||+|+.+++-.  ..+  +.+++|+.|
T Consensus       125 ~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GI--S~LknLq~L  200 (699)
T KOG3665|consen  125 QHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGI--SRLKNLQVL  200 (699)
T ss_pred             hhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHH--hccccHHHH
Confidence            46788876643 234455554 79999999999877542 223345899999999999988753  345  789999999


Q ss_pred             eCCCCcccccCC--hhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEc
Q 045166           78 DLSDNRFTGKLP--SNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIIL  155 (305)
Q Consensus        78 ~Ls~N~l~g~lp--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdL  155 (305)
                      .+.+=.+. .-.  .+ +-+|++|+.||+|.-.......         +...+            .+-...+++|+.||.
T Consensus       201 ~mrnLe~e-~~~~l~~-LF~L~~L~vLDIS~~~~~~~~~---------ii~qY------------lec~~~LpeLrfLDc  257 (699)
T KOG3665|consen  201 SMRNLEFE-SYQDLID-LFNLKKLRVLDISRDKNNDDTK---------IIEQY------------LECGMVLPELRFLDC  257 (699)
T ss_pred             hccCCCCC-chhhHHH-HhcccCCCeeeccccccccchH---------HHHHH------------HHhcccCccccEEec
Confidence            88876665 222  13 5579999999998732211100         00000            111223789999999


Q ss_pred             cCCccccccchh
Q 045166          156 SNNRFDGAIPAS  167 (305)
Q Consensus       156 s~N~l~g~~p~~  167 (305)
                      |+..+.+.+-+.
T Consensus       258 SgTdi~~~~le~  269 (699)
T KOG3665|consen  258 SGTDINEEILEE  269 (699)
T ss_pred             CCcchhHHHHHH
Confidence            998887654443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.97  E-value=0.00038  Score=34.99  Aligned_cols=22  Identities=41%  Similarity=0.528  Sum_probs=16.7

Q ss_pred             cccEEEccCCccccccchhhcCC
Q 045166          149 ILAGIILSNNRFDGAIPASIANL  171 (305)
Q Consensus       149 ~L~~LdLs~N~l~g~~p~~~~~L  171 (305)
                      +|++|||++|+|+ .+|.+|++|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            4788899999988 788776543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.88  E-value=0.00061  Score=56.68  Aligned_cols=88  Identities=20%  Similarity=0.215  Sum_probs=44.9

Q ss_pred             cChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccc--cceeeeCCCCCCCCCCCccEEeCCCCcccc--cCC
Q 045166           14 IPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSN--IFYGIIEEPRTSCGFSKLRIIDLSDNRFTG--KLP   89 (305)
Q Consensus        14 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N--~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g--~lp   89 (305)
                      +..-...+..|+.|.+.+-.++. + ..+-.|++|+.|.++.|  ...+.++...  ..+++|++++++.|++.-  +++
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~--e~~P~l~~l~ls~Nki~~lstl~  110 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLA--EKAPNLKVLNLSGNKIKDLSTLR  110 (260)
T ss_pred             cccccccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehh--hhCCceeEEeecCCccccccccc
Confidence            33333344455555555544443 1 12335666777777777  4444333333  345677777777776651  121


Q ss_pred             hhhhhCcccchhccCccc
Q 045166           90 SNSFLCWNAMKIVNTSAL  107 (305)
Q Consensus        90 ~~~~~~l~~L~~L~l~~~  107 (305)
                      .  ...+.+|..|++.+|
T Consensus       111 p--l~~l~nL~~Ldl~n~  126 (260)
T KOG2739|consen  111 P--LKELENLKSLDLFNC  126 (260)
T ss_pred             h--hhhhcchhhhhcccC
Confidence            1  344555666666553

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.78  E-value=0.00055  Score=56.92  Aligned_cols=64  Identities=25%  Similarity=0.245  Sum_probs=32.0

Q ss_pred             cCCCCCEEeccCc--ccccCcchhhcCCCCCCEEEcccccceeeeCCCC-CCCCCCCccEEeCCCCccc
Q 045166           20 NCSKLEFLGLGIN--QISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPR-TSCGFSKLRIIDLSDNRFT   85 (305)
Q Consensus        20 ~l~~L~~L~L~~N--~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~~~l~~L~~L~Ls~N~l~   85 (305)
                      .|++|+.|.++.|  ++++.++.....+++|++|+++.|++.-  +..+ ....+.+|..||+.+|..+
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence            4555666666666  4444444434444666666666666542  1111 0034445556666555544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.72  E-value=0.0011  Score=55.67  Aligned_cols=167  Identities=20%  Similarity=0.203  Sum_probs=92.3

Q ss_pred             hhhcCCCCCEEeccCcccccCcchhhc----CCCCCCEEEcccccceeee----CC-------CCCCCCCCCccEEeCCC
Q 045166           17 SLINCSKLEFLGLGINQISDTFPSWLG----TLPKLNVLILRSNIFYGII----EE-------PRTSCGFSKLRIIDLSD   81 (305)
Q Consensus        17 ~~~~l~~L~~L~L~~N~l~~~~p~~~~----~l~~L~~L~L~~N~l~~~~----p~-------~~~~~~l~~L~~L~Ls~   81 (305)
                      .+..+..++.++||+|.|...--.+++    +-.+|+..+++.- ++|..    +.       .+  .+|+.|+..+||+
T Consensus        25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aL--lkcp~l~~v~LSD  101 (388)
T COG5238          25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKAL--LKCPRLQKVDLSD  101 (388)
T ss_pred             HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHH--hcCCcceeeeccc
Confidence            344577888888888888754444443    4466777776653 22211    11       22  5778888888888


Q ss_pred             CcccccCChh---hhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCC
Q 045166           82 NRFTGKLPSN---SFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNN  158 (305)
Q Consensus        82 N~l~g~lp~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N  158 (305)
                      |.|....|..   .++.-+.|.+|.+++|.. +  ++.-+.+...++.       +..+.    -...-+.|+.++...|
T Consensus       102 NAfg~~~~e~L~d~is~~t~l~HL~l~NnGl-G--p~aG~rigkal~~-------la~nK----Kaa~kp~Le~vicgrN  167 (388)
T COG5238         102 NAFGSEFPEELGDLISSSTDLVHLKLNNNGL-G--PIAGGRIGKALFH-------LAYNK----KAADKPKLEVVICGRN  167 (388)
T ss_pred             cccCcccchHHHHHHhcCCCceeEEeecCCC-C--ccchhHHHHHHHH-------HHHHh----hhccCCCceEEEeccc
Confidence            8887666643   355667788888777422 1  0000100000000       00000    0011355778888888


Q ss_pred             ccccccchhh--------cCCCCce--eeecCCcc--------ccCCCCCCEEeccCCcce
Q 045166          159 RFDGAIPASI--------ANLKGLQ--FSGRIPQQ--------LAELTFLAFFNVSDNYLT  201 (305)
Q Consensus       159 ~l~g~~p~~~--------~~L~~L~--l~g~ip~~--------l~~l~~L~~L~Ls~N~l~  201 (305)
                      ++. .-|...        .++..++  -.|.-|..        +.-+.+|+.||++.|-|+
T Consensus       168 Rle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         168 RLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             hhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence            876 333221        1233333  34445542        334789999999999887

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.60  E-value=0.00084  Score=33.73  Aligned_cols=12  Identities=33%  Similarity=0.260  Sum_probs=5.3

Q ss_pred             CCEEEcccccce
Q 045166           48 LNVLILRSNIFY   59 (305)
Q Consensus        48 L~~L~L~~N~l~   59 (305)
                      |++||+++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.53  E-value=0.0088  Score=44.82  Aligned_cols=86  Identities=16%  Similarity=0.248  Sum_probs=51.3

Q ss_pred             ChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhh
Q 045166           15 PRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFL   94 (305)
Q Consensus        15 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~   94 (305)
                      ..+|.++++|+.+.+.. .+...-...|.++++|+.+.+..+ +...-...|  .++++++.+.+.+ .+. .++...|.
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F--~~~~~l~~i~~~~-~~~-~i~~~~F~   78 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAF--SNCKSLESITFPN-NLK-SIGDNAFS   78 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTT--TT-TT-EEEEETS-TT--EE-TTTTT
T ss_pred             HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeee--ecccccccccccc-ccc-cccccccc
Confidence            45788888999999875 566544456778888999998875 654444445  7777899999876 554 56666677


Q ss_pred             CcccchhccCcc
Q 045166           95 CWNAMKIVNTSA  106 (305)
Q Consensus        95 ~l~~L~~L~l~~  106 (305)
                      ..++|+.+.+..
T Consensus        79 ~~~~l~~i~~~~   90 (129)
T PF13306_consen   79 NCTNLKNIDIPS   90 (129)
T ss_dssp             T-TTECEEEETT
T ss_pred             ccccccccccCc
Confidence            778887777643

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.48  E-value=0.0033  Score=52.89  Aligned_cols=157  Identities=14%  Similarity=0.010  Sum_probs=82.6

Q ss_pred             EEEcccCcccccc----ChhhhcCCCCCEEeccCccccc---Ccch-------hhcCCCCCCEEEcccccceeeeCCCCC
Q 045166            2 FYLRNENTFLQRI----PRSLINCSKLEFLGLGINQISD---TFPS-------WLGTLPKLNVLILRSNIFYGIIEEPRT   67 (305)
Q Consensus         2 ~L~Ls~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~---~~p~-------~~~~l~~L~~L~L~~N~l~~~~p~~~~   67 (305)
                      .+|||+|-|..+-    ...+.+-.+|+..+++.-....   .+|+       .+-.|++|+..+||.|.|....|+.+.
T Consensus        34 evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~  113 (388)
T COG5238          34 EVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELG  113 (388)
T ss_pred             EEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHH
Confidence            5788999887543    3344556777777776643221   2222       334678888888888877665555430


Q ss_pred             --CCCCCCccEEeCCCCcccccCChhhhh-------------CcccchhccCcccccccccccCCCCcCCCcc-cccccc
Q 045166           68 --SCGFSKLRIIDLSDNRFTGKLPSNSFL-------------CWNAMKIVNTSALRYLQDVLFPYGQVSSNVL-GTYDYS  131 (305)
Q Consensus        68 --~~~l~~L~~L~Ls~N~l~g~lp~~~~~-------------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~  131 (305)
                        ..+-+.|.+|.+++|.+- .+...-++             .-+.|++.....|++.....-..   ...+. ...+..
T Consensus       114 d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~---a~~l~sh~~lk~  189 (388)
T COG5238         114 DLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELS---AALLESHENLKE  189 (388)
T ss_pred             HHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHH---HHHHHhhcCcee
Confidence              134467788888887764 43322121             12233333333332211100000   00000 012334


Q ss_pred             ccccccCcccccc--------cccccccEEEccCCcccc
Q 045166          132 RTMNSKGRVMTYN--------KIPNILAGIILSNNRFDG  162 (305)
Q Consensus       132 ~~~~~~~~~~~~~--------~~~~~L~~LdLs~N~l~g  162 (305)
                      +.+..+++.+.-.        .-+.+|+.|||..|-|+-
T Consensus       190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~  228 (388)
T COG5238         190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL  228 (388)
T ss_pred             EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence            4455566554421        126789999999999873

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.30  E-value=0.00017  Score=60.59  Aligned_cols=96  Identities=23%  Similarity=0.202  Sum_probs=71.4

Q ss_pred             EEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCC
Q 045166            3 YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDN   82 (305)
Q Consensus         3 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N   82 (305)
                      |++=++.++. + .....|+.|++|.|+-|.|+..-  .+..+++|++|+|..|.|.. +.+-+...++++|+.|-|..|
T Consensus        24 LNcwg~~L~D-I-sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LWL~EN   98 (388)
T KOG2123|consen   24 LNCWGCGLDD-I-SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLWLDEN   98 (388)
T ss_pred             hcccCCCccH-H-HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHhhccC
Confidence            4444555542 1 13457899999999999998743  47889999999999999864 333333378899999999999


Q ss_pred             cccccCChh----hhhCcccchhcc
Q 045166           83 RFTGKLPSN----SFLCWNAMKIVN  103 (305)
Q Consensus        83 ~l~g~lp~~----~~~~l~~L~~L~  103 (305)
                      .-.|.-+..    .+.-+++|++||
T Consensus        99 PCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   99 PCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             CcccccchhHHHHHHHHcccchhcc
Confidence            998876643    356688888887

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.12  E-value=0.00013  Score=61.91  Aligned_cols=81  Identities=22%  Similarity=0.128  Sum_probs=36.0

Q ss_pred             CCEEeccCcccccC-cchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCC-cccccCChhhhhCcccchh
Q 045166           24 LEFLGLGINQISDT-FPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDN-RFTGKLPSNSFLCWNAMKI  101 (305)
Q Consensus        24 L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N-~l~g~lp~~~~~~l~~L~~  101 (305)
                      |+.|||++..|+.. +-..+..+.+|+.|.|.++++...+-..+  ++-.+|+.|+++.. .|+..--.-++.+++.|..
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i--AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI--AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH--hccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            55555555555421 11223345555555555555554443333  44445555555532 2221111122444555555


Q ss_pred             ccCcc
Q 045166          102 VNTSA  106 (305)
Q Consensus       102 L~l~~  106 (305)
                      |+++.
T Consensus       265 LNlsW  269 (419)
T KOG2120|consen  265 LNLSW  269 (419)
T ss_pred             cCchH
Confidence            55444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.63  E-value=0.011  Score=30.83  Aligned_cols=23  Identities=39%  Similarity=0.767  Sum_probs=17.5

Q ss_pred             CCCccEEeCCCCcccccCChhhhh
Q 045166           71 FSKLRIIDLSDNRFTGKLPSNSFL   94 (305)
Q Consensus        71 l~~L~~L~Ls~N~l~g~lp~~~~~   94 (305)
                      +++|++|+|++|+++ .+|.+.|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHcc
Confidence            467888888888888 78876553

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.63  E-value=0.011  Score=30.83  Aligned_cols=23  Identities=39%  Similarity=0.767  Sum_probs=17.5

Q ss_pred             CCCccEEeCCCCcccccCChhhhh
Q 045166           71 FSKLRIIDLSDNRFTGKLPSNSFL   94 (305)
Q Consensus        71 l~~L~~L~Ls~N~l~g~lp~~~~~   94 (305)
                      +++|++|+|++|+++ .+|.+.|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHcc
Confidence            467888888888888 78876553

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.62  E-value=0.038  Score=41.33  Aligned_cols=96  Identities=18%  Similarity=0.225  Sum_probs=57.9

Q ss_pred             EEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCC
Q 045166            3 YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDN   82 (305)
Q Consensus         3 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N   82 (305)
                      +.+.. .+...-...|.++++|+.+.+.++ +...-...|.++++++.+.+.+ .+...-...|  ..+++|+.+++..+
T Consensus        17 i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F--~~~~~l~~i~~~~~   91 (129)
T PF13306_consen   17 ITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAF--SNCTNLKNIDIPSN   91 (129)
T ss_dssp             EEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTT--TT-TTECEEEETTT
T ss_pred             EEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccc--cccccccccccCcc
Confidence            44543 455455667899999999999886 6653444677888999999976 4544444455  67899999999876


Q ss_pred             cccccCChhhhhCcccchhccCcc
Q 045166           83 RFTGKLPSNSFLCWNAMKIVNTSA  106 (305)
Q Consensus        83 ~l~g~lp~~~~~~l~~L~~L~l~~  106 (305)
                       +. .++...|.+. .++.+.+..
T Consensus        92 -~~-~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   92 -IT-EIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             --B-EEHTTTTTT--T--EEE-TT
T ss_pred             -cc-EEchhhhcCC-CceEEEECC
Confidence             65 6666768776 787777654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.43  E-value=0.0081  Score=27.99  Aligned_cols=13  Identities=62%  Similarity=0.968  Sum_probs=5.1

Q ss_pred             CccEEeCCCCccc
Q 045166           73 KLRIIDLSDNRFT   85 (305)
Q Consensus        73 ~L~~L~Ls~N~l~   85 (305)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3455555555544

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.28  E-value=0.011  Score=27.53  Aligned_cols=13  Identities=46%  Similarity=0.488  Sum_probs=6.2

Q ss_pred             cccEEEccCCccc
Q 045166          149 ILAGIILSNNRFD  161 (305)
Q Consensus       149 ~L~~LdLs~N~l~  161 (305)
                      +|+.|||++|+|+
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4566666666655

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.87  E-value=0.00064  Score=55.76  Aligned_cols=84  Identities=13%  Similarity=0.080  Sum_probs=42.5

Q ss_pred             hhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCc
Q 045166           17 SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCW   96 (305)
Q Consensus        17 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l   96 (305)
                      ++......+.||++.|++.. +-..|.-++.|..|+++.|.+. ..|..+  +....++.+++..|..+ ..|.+ ++..
T Consensus        37 ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~--~q~~e~~~~~~~~n~~~-~~p~s-~~k~  110 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDA--KQQRETVNAASHKNNHS-QQPKS-QKKE  110 (326)
T ss_pred             hhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhH--HHHHHHHHHHhhccchh-hCCcc-cccc
Confidence            34445555555555555543 3334444555555555555554 244444  44455555555555555 55544 5555


Q ss_pred             ccchhccCcc
Q 045166           97 NAMKIVNTSA  106 (305)
Q Consensus        97 ~~L~~L~l~~  106 (305)
                      +.++++++-.
T Consensus       111 ~~~k~~e~k~  120 (326)
T KOG0473|consen  111 PHPKKNEQKK  120 (326)
T ss_pred             CCcchhhhcc
Confidence            5555554444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.39  E-value=0.0019  Score=54.50  Aligned_cols=81  Identities=17%  Similarity=0.163  Sum_probs=63.1

Q ss_pred             cCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCCh-hhhhCccc
Q 045166           20 NCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPS-NSFLCWNA   98 (305)
Q Consensus        20 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~-~~~~~l~~   98 (305)
                      .+.+.+.|+.=++.++.+  .....++.|++|.||-|+++..-  ++  ..|++|+.|+|..|.|. .+.+ ..+.++++
T Consensus        17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl--~rCtrLkElYLRkN~I~-sldEL~YLknlps   89 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PL--QRCTRLKELYLRKNCIE-SLDELEYLKNLPS   89 (388)
T ss_pred             HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hH--HHHHHHHHHHHHhcccc-cHHHHHHHhcCch
Confidence            356778888888888762  23458999999999999998754  34  67899999999999998 5542 34678889


Q ss_pred             chhccCccc
Q 045166           99 MKIVNTSAL  107 (305)
Q Consensus        99 L~~L~l~~~  107 (305)
                      |+.|-+..|
T Consensus        90 Lr~LWL~EN   98 (388)
T KOG2123|consen   90 LRTLWLDEN   98 (388)
T ss_pred             hhhHhhccC
Confidence            999888765

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.43  E-value=0.0013  Score=54.05  Aligned_cols=79  Identities=13%  Similarity=0.026  Sum_probs=66.2

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD   81 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~   81 (305)
                      +||++.|++. .+-..|.-++.|..||++.|++.- .|..++.+..+..+++..|.+.. .|.++  +..+.++++++-.
T Consensus        46 vld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~~~~-~p~s~--~k~~~~k~~e~k~  120 (326)
T KOG0473|consen   46 VLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNNHSQ-QPKSQ--KKEPHPKKNEQKK  120 (326)
T ss_pred             eehhhhhHHH-hhccchHHHHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccchhh-CCccc--cccCCcchhhhcc
Confidence            5888888887 566778888888999999999875 88888888888888888888864 77777  8889999999988


Q ss_pred             Cccc
Q 045166           82 NRFT   85 (305)
Q Consensus        82 N~l~   85 (305)
                      |.+.
T Consensus       121 ~~~~  124 (326)
T KOG0473|consen  121 TEFF  124 (326)
T ss_pred             Ccch
Confidence            8876

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.20  E-value=0.14  Score=26.53  Aligned_cols=19  Identities=37%  Similarity=0.490  Sum_probs=11.4

Q ss_pred             CCCCCEEeccCcccccCcch
Q 045166           21 CSKLEFLGLGINQISDTFPS   40 (305)
Q Consensus        21 l~~L~~L~L~~N~l~~~~p~   40 (305)
                      +++|+.|+|++|+|+. +|.
T Consensus         1 L~~L~~L~L~~N~l~~-lp~   19 (26)
T smart00370        1 LPNLRELDLSNNQLSS-LPP   19 (26)
T ss_pred             CCCCCEEECCCCcCCc-CCH
Confidence            3556666666666665 443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.20  E-value=0.14  Score=26.53  Aligned_cols=19  Identities=37%  Similarity=0.490  Sum_probs=11.4

Q ss_pred             CCCCCEEeccCcccccCcch
Q 045166           21 CSKLEFLGLGINQISDTFPS   40 (305)
Q Consensus        21 l~~L~~L~L~~N~l~~~~p~   40 (305)
                      +++|+.|+|++|+|+. +|.
T Consensus         1 L~~L~~L~L~~N~l~~-lp~   19 (26)
T smart00369        1 LPNLRELDLSNNQLSS-LPP   19 (26)
T ss_pred             CCCCCEEECCCCcCCc-CCH
Confidence            3556666666666665 443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.48  E-value=0.059  Score=27.40  Aligned_cols=19  Identities=26%  Similarity=0.204  Sum_probs=10.3

Q ss_pred             ccccEEEccCCccccccch
Q 045166          148 NILAGIILSNNRFDGAIPA  166 (305)
Q Consensus       148 ~~L~~LdLs~N~l~g~~p~  166 (305)
                      ++|+.|||++|+|++.-..
T Consensus         2 ~~L~~L~l~~n~i~~~g~~   20 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGAS   20 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHH
Confidence            4566777777776654433

...

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=87.83  E-value=0.36  Score=25.12  Aligned_cols=18  Identities=33%  Similarity=0.693  Sum_probs=14.7

Q ss_pred             CCccEEeCCCCcccccCCh
Q 045166           72 SKLRIIDLSDNRFTGKLPS   90 (305)
Q Consensus        72 ~~L~~L~Ls~N~l~g~lp~   90 (305)
                      ++|+.|++++|+++ .+|+
T Consensus         2 ~~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             cccceeecCCCccc-cCcc
Confidence            35888999999998 8885

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=86.73  E-value=0.57  Score=24.42  Aligned_cols=13  Identities=46%  Similarity=0.562  Sum_probs=6.2

Q ss_pred             CCCCEEeccCccc
Q 045166           22 SKLEFLGLGINQI   34 (305)
Q Consensus        22 ~~L~~L~L~~N~l   34 (305)
                      ++|+.|++++|.|
T Consensus         2 ~~L~~L~L~~NkI   14 (26)
T smart00365        2 TNLEELDLSQNKI   14 (26)
T ss_pred             CccCEEECCCCcc
Confidence            3444455555544

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=81.14  E-value=1.2  Score=23.58  Aligned_cols=14  Identities=29%  Similarity=0.282  Sum_probs=10.5

Q ss_pred             CCCCEEeccCCcce
Q 045166          188 TFLAFFNVSDNYLT  201 (305)
Q Consensus       188 ~~L~~L~Ls~N~l~  201 (305)
                      ++|++|||++|.+.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            46788888888774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	305
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		7e-22
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-21
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		8e-10

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  101 bits (251), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 128/305 (41%), Gaps = 61/305 (20%)
Query: 8   NTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRT 67
           N     IP  L NC+ L ++ L  N+++   P W+G L  L +L L +N F G I     
Sbjct: 473 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 532
Query: 68  SCGFSKLRIIDLSDNRFTGKLPSNSFL--------------------------CWNAMKI 101
            C    L  +DL+ N F G +P+  F                           C  A  +
Sbjct: 533 DC--RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 590
Query: 102 VNTSALRYLQ----DVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGII--- 154
           +    +R  Q        P   ++S V G +  S T ++ G +M  +   N+L+G I   
Sbjct: 591 LEFQGIRSEQLNRLSTRNPC-NITSRVYGGH-TSPTFDNNGSMMFLDMSYNMLSGYIPKE 648
Query: 155 -----------LSNNRFDGAIPASIANLKGL--------QFSGRIPQQLAELTFLAFFNV 195
                      L +N   G+IP  + +L+GL        +  GRIPQ ++ LT L   ++
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 708
Query: 196 SDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGCD----SGEAPTNEDHTEGSEES 251
           S+N L+GPIP+  QF TF    F  N GLCG PL + CD     G A     H    E  
Sbjct: 709 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR-CDPSNADGYAHHQRSHGRRLENL 767
Query: 252 LFSGA 256
            F GA
Sbjct: 768 YFQGA 772

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 125/288 (43%), Gaps = 61/288 (21%)
Query: 8   NTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRT 67
           N     IP  L NC+ L ++ L  N+++   P W+G L  L +L L +N F G I     
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535
Query: 68  SCGFSKLRIIDLSDNRFTGKLPSNSFL--------------------------CWNAMKI 101
            C    L  +DL+ N F G +P+  F                           C  A  +
Sbjct: 536 DC--RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593
Query: 102 VNTSALRYLQ----DVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGII--- 154
           +    +R  Q        P   ++S V G +  S T ++ G +M  +   N+L+G I   
Sbjct: 594 LEFQGIRSEQLNRLSTRNPC-NITSRVYGGH-TSPTFDNNGSMMFLDMSYNMLSGYIPKE 651
Query: 155 -----------LSNNRFDGAIPASIANLKGL--------QFSGRIPQQLAELTFLAFFNV 195
                      L +N   G+IP  + +L+GL        +  GRIPQ ++ LT L   ++
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711
Query: 196 SDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGCDSGEAPTNED 243
           S+N L+GPIP+  QF TF    F  N GLCG PL + CD    P+N D
Sbjct: 712 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR-CD----PSNAD 754

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 92/220 (41%), Gaps = 31/220 (14%)
Query: 14  IPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSK 73
           IP  L     L  L    N +S T P  + +LP L  +    N   G I  P +   FSK
Sbjct: 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI--PDSYGSFSK 174
Query: 74  L-RIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVL---GTYD 129
           L   + +S NR TGK+P                      ++   +  +S N+L    +  
Sbjct: 175 LFTSMTISRNRLTGKIPPT------------------FANLNLAFVDLSRNMLEGDASVL 216
Query: 130 YSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSGRIPQQLAELTF 189
           +    N++   +  N +   L  + LS N  +G       +L+  +  G +PQ L +L F
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKN-LNGL------DLRNNRIYGTLPQGLTQLKF 269
Query: 190 LAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPL 229
           L   NVS N L G IPQG     FD +++  N  LCG PL
Sbjct: 270 LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	305
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-50
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-26
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-34
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  177 bits (451), Expect = 1e-50
 Identities = 59/302 (19%), Positives = 96/302 (31%), Gaps = 65/302 (21%)

Query: 6   NENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEP 65
           + N     IP  L NC+ L ++ L  N+++   P W+G L  L +L L +N F G I  P
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--P 531

Query: 66  RTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVL 125
                   L  +DL+ N F G +P+  F     +     +         + Y +      
Sbjct: 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA------GKRYVYIKNDGMKK 585

Query: 126 GTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGL--------QFS 177
             +     +  +G         +      +++  + G    +  N   +          S
Sbjct: 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645

Query: 178 GRIPQQLAELTFLAFFNVSDNYLTGPIPQ------------------------------- 206
           G IP+++  + +L   N+  N ++G IP                                
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705

Query: 207 -----------------GKQFATFDNTSFDGNSGLCGKPLSKGCDSGEAPTNEDHTEGSE 249
                              QF TF    F  N GLCG PL + CD   A     H     
Sbjct: 706 LTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR-CDPSNADGYAHHQRSHH 764

Query: 250 ES 251
             
Sbjct: 765 HH 766

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  109 bits (274), Expect = 9e-27
 Identities = 61/215 (28%), Positives = 83/215 (38%), Gaps = 63/215 (29%)

Query: 1   MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYG 60
             YL+N N F  +IP +L NCS+L  L L  N +S T PS LG+L KL  L L  N+  G
Sbjct: 398 ELYLQN-NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456

Query: 61  IIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQV 120
            I  P+       L  + L  N  TG++PS          + N + L ++          
Sbjct: 457 EI--PQELMYVKTLETLILDFNDLTGEIPSG---------LSNCTNLNWIS--------- 496

Query: 121 SSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ----- 175
                                             LSNNR  G IP  I  L+ L      
Sbjct: 497 ----------------------------------LSNNRLTGEIPKWIGRLENLAILKLS 522

Query: 176 ---FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG 207
              FSG IP +L +   L + +++ N   G IP  
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  108 bits (272), Expect = 2e-26
 Identities = 57/205 (27%), Positives = 79/205 (38%), Gaps = 41/205 (20%)

Query: 14  IPRSLI-NCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCG-F 71
           IP  L   C  L  L L  N      P + G+   L  L L SN F G +  P  +    
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL--PMDTLLKM 342

Query: 72  SKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYS 131
             L+++DLS N F+G+LP +            +++L  L         +SSN        
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNL--------SASLLTLD--------LSSNNF------ 380

Query: 132 RTMNSKGRVMTY--NKIPNILAGIILSNNRFDGAIPASIANLKGLQ--------FSGRIP 181
                 G ++        N L  + L NN F G IP +++N   L          SG IP
Sbjct: 381 -----SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435

Query: 182 QQLAELTFLAFFNVSDNYLTGPIPQ 206
             L  L+ L    +  N L G IPQ
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQ 460

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  103 bits (260), Expect = 6e-25
 Identities = 59/216 (27%), Positives = 80/216 (37%), Gaps = 50/216 (23%)

Query: 7   ENTFLQRIPRSLINCSKLEFLGLGINQISDTFP-SWLGTLPKLNVLILRSNIFYGIIEEP 65
            N F   +P    +CS LE L L  N  S   P   L  +  L VL L  N F G + E 
Sbjct: 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362

Query: 66  RTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVL 125
            T+   + L  +DLS N F+G +  N             + L+ L         + +N  
Sbjct: 363 LTNL-SASLLTLDLSSNNFSGPILPNLCQNPK-------NTLQELY--------LQNNGF 406

Query: 126 -GTYDYSRTMNSKGRVMTYNKIP----NI--LAGIILSNNRFDGAIPASIANLKGLQ--- 175
            G                   IP    N   L  + LS N   G IP+S+ +L  L+   
Sbjct: 407 TGK------------------IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448

Query: 176 -----FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQ 206
                  G IPQ+L  +  L    +  N LTG IP 
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.5 bits (241), Expect = 2e-22
 Identities = 54/217 (24%), Positives = 86/217 (39%), Gaps = 56/217 (25%)

Query: 8   NTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRT 67
           N F   IP  L +CS L+ L +  N++S  F   + T  +L +L + SN F G I  P  
Sbjct: 210 NNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI--PPL 266

Query: 68  SCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVL-G 126
                 L+ + L++N+FTG++P                 L  L         +S N   G
Sbjct: 267 PL--KSLQYLSLAENKFTGEIPDFLSG--------ACDTLTGL--------DLSGNHFYG 308

Query: 127 TYDYSRTMNSKGRVMTYNKIPNILAG------IILSNNRFDGAIPA-SIANLKGLQ---- 175
                              +P           + LS+N F G +P  ++  ++GL+    
Sbjct: 309 A------------------VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350

Query: 176 ----FSGRIPQQLAELTF-LAFFNVSDNYLTGPIPQG 207
               FSG +P+ L  L+  L   ++S N  +GPI   
Sbjct: 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 90.4 bits (225), Expect = 2e-20
 Identities = 44/205 (21%), Positives = 72/205 (35%), Gaps = 50/205 (24%)

Query: 14  IPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSK 73
           IP+ L+    LE L L  N ++   PS L     LN + L +N   G I  P+       
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI--PKWIGRLEN 515

Query: 74  LRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVL-GTYDYSR 132
           L I+ LS+N F+G +P+          + +  +L +L         +++N+  GT     
Sbjct: 516 LAILKLSNNSFSGNIPAE---------LGDCRSLIWL--------DLNTNLFNGT----- 553

Query: 133 TMNSKGRVMTYNKIPNILAGII--LSNNRFDGAIPASIANLKGL----------QFSGRI 180
                        IP  +      ++ N   G     I N              +F G  
Sbjct: 554 -------------IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600

Query: 181 PQQLAELTFLAFFNVSDNYLTGPIP 205
            +QL  L+     N++     G   
Sbjct: 601 SEQLNRLSTRNPCNITSRVYGGHTS 625

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 88.8 bits (221), Expect = 7e-20
 Identities = 38/210 (18%), Positives = 72/210 (34%), Gaps = 38/210 (18%)

Query: 6   NENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEP 65
             N     +  SL++ + LE L L  + I+ +          L  L L  N   G +   
Sbjct: 61  PLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTL 119

Query: 66  RTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVL 125
            +    S L+ +++S N        +  L          ++L  L         +S+N +
Sbjct: 120 TSLGSCSGLKFLNVSSNTLDFPGKVSGGL--------KLNSLEVL--------DLSANSI 163

Query: 126 -GTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ--------F 176
            G              +  +     L  + +S N+  G +   ++    L+        F
Sbjct: 164 SGANVVG--------WVLSDGCGE-LKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNF 212

Query: 177 SGRIPQQLAELTFLAFFNVSDNYLTGPIPQ 206
           S  IP  L + + L   ++S N L+G   +
Sbjct: 213 STGIP-FLGDCSALQHLDISGNKLSGDFSR 241

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.1 bits (201), Expect = 3e-17
 Identities = 43/203 (21%), Positives = 71/203 (34%), Gaps = 46/203 (22%)

Query: 19  INCS-----KLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSK 73
           + C       ++     +N       S L +L  L  L L ++   G +         + 
Sbjct: 45  VTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG---FKCSAS 101

Query: 74  LRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRT 133
           L  +DLS N  +G + + + L        + S L++L         VSSN L        
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLG-------SCSGLKFL--------NVSSNTL-------- 138

Query: 134 MNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIA---NLKGLQ--------FSGRIPQ 182
            +  G+V    K+ + L  + LS N   GA             L+         SG +  
Sbjct: 139 -DFPGKVSGGLKLNS-LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD- 195

Query: 183 QLAELTFLAFFNVSDNYLTGPIP 205
            ++    L F +VS N  +  IP
Sbjct: 196 -VSRCVNLEFLDVSSNNFSTGIP 217

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 9/65 (13%)

Query: 155 LSNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQ 206
              N    A+ +S+ +L GL+         +G +         L   ++S N L+GP+  
Sbjct: 60  KPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTT 118

Query: 207 GKQFA 211
                
Sbjct: 119 LTSLG 123

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  125 bits (317), Expect = 4e-34
 Identities = 49/226 (21%), Positives = 70/226 (30%), Gaps = 65/226 (28%)

Query: 14  IPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKL-NVLILRSNIFYGIIEEPRTSCGFS 72
           +P S+ +   L  +    N+IS   P   G+  KL   + +  N   G I  P  +    
Sbjct: 141 LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI--PP-TFANL 197

Query: 73  KLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSR 132
            L  +DLS N   G                +    + +                      
Sbjct: 198 NLAFVDLSRNMLEGDASVL---------FGSDKNTQKIH--------------------- 227

Query: 133 TMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ--------FSGRIPQQL 184
                                 L+ N     +   +   K L           G +PQ L
Sbjct: 228 ----------------------LAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGL 264

Query: 185 AELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLS 230
            +L FL   NVS N L G IPQG     FD +++  N  LCG PL 
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 72.2 bits (178), Expect = 1e-14
 Identities = 32/208 (15%), Positives = 53/208 (25%), Gaps = 65/208 (31%)

Query: 11  LQRIPRSLINCSKL----EFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPR 66
           L +I + L N + L                          ++N L L           P 
Sbjct: 11  LLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS 70

Query: 67  TSCGFSKLRIIDLSD-NRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVL 125
           +      L  + +   N   G +P           I   + L YL               
Sbjct: 71  SLANLPYLNFLYIGGINNLVGPIPPA---------IAKLTQLHYLY-------------- 107

Query: 126 GTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ--------FS 177
                                        +++    GAIP  ++ +K L          S
Sbjct: 108 -----------------------------ITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138

Query: 178 GRIPQQLAELTFLAFFNVSDNYLTGPIP 205
           G +P  ++ L  L       N ++G IP
Sbjct: 139 GTLPPSISSLPNLVGITFDGNRISGAIP 166

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.4 bits (217), Expect = 2e-19
 Identities = 36/252 (14%), Positives = 64/252 (25%), Gaps = 35/252 (13%)

Query: 6   NENTFLQRIPRSLI-NCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEE 64
             N   Q +          +  + L  N+      +    +P L  L+LR      +   
Sbjct: 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS 472

Query: 65  PRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSA--LRYLQDVLFPYGQVSS 122
           P        L I+DLS+N     +  +       ++I++     L  L     P G    
Sbjct: 473 PSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPGG--PI 529

Query: 123 NVLGTYDYSRTMNSKGRVMTYNKIPNILAGII----------LSNNRFDGAIPASIANLK 172
             L    +   +N     +  N    I   +           L  N  +    +   N  
Sbjct: 530 YFLKGLSHLHILN-----LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV 584

Query: 173 GL--------QFSGRIPQQLAE-LTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSG 223
            L          +    +        L   ++  N           F  + N +      
Sbjct: 585 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPE 644

Query: 224 L-----CGKPLS 230
           L     C  P  
Sbjct: 645 LSSHYLCNTPPH 656

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.5 bits (181), Expect = 9e-15
 Identities = 37/235 (15%), Positives = 63/235 (26%), Gaps = 50/235 (21%)

Query: 14  IPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIE-------EPR 66
              S     +LE+  L  N I   F   L  L  +  L L+ +     I        +  
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323

Query: 67  TSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLG 126
           +      L  +++ DN   G + SN F             L+YL         +S++   
Sbjct: 324 SFQWLKCLEHLNMEDNDIPG-IKSNMF--------TGLINLKYLS--------LSNSFTS 366

Query: 127 TYDYSRTM-----NSKGRV--MTYNKIPNILAGII----------LSNNRFDGAIPAS-I 168
               +        +S   +  +T NKI  I +             L  N     +     
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426

Query: 169 ANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDN 215
             L+ +         +        A +  L    +    L         F    N
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 36/237 (15%), Positives = 63/237 (26%), Gaps = 44/237 (18%)

Query: 14  IPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSK 73
                +    L  L L  N +S T       L  L  L+L +N    +  E       S 
Sbjct: 113 KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS 172

Query: 74  LRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVL-GTYDYSR 132
           L+ ++LS N+         F             L  L         +++  L  +     
Sbjct: 173 LKKLELSSNQIKE-FSPGCF--------HAIGRLFGL--------FLNNVQLGPSLTEKL 215

Query: 133 TMNSKGR-----VMTYNKIPNILAGII------------LSNNRFDGAIPASIANLKGLQ 175
            +           ++ +++                    LS N  +     S A L  L+
Sbjct: 216 CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE 275

Query: 176 --------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGL 224
                           L  L  + + N+  ++    I         D+ SF     L
Sbjct: 276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL-ASLPKIDDFSFQWLKCL 331

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 64.6 bits (158), Expect = 7e-12
 Identities = 37/213 (17%), Positives = 65/213 (30%), Gaps = 43/213 (20%)

Query: 8   NTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRT 67
            +  +    S      LE L +  N I     +    L  L  L L ++          T
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNET 374

Query: 68  --SCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVL 125
             S   S L I++L+ N+ +  + S++F             L  L         +  N +
Sbjct: 375 FVSLAHSPLHILNLTKNKISK-IESDAFS--------WLGHLEVL--------DLGLNEI 417

Query: 126 GTYDYSRTMNSKGRVMTYNKIPNI--LAGIILSNNRFDGAIPASIANLKGLQ-------- 175
                       G+ +T  +   +  +  I LS N++      S A +  LQ        
Sbjct: 418 ------------GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465

Query: 176 FSG--RIPQQLAELTFLAFFNVSDNYLTGPIPQ 206
                  P     L  L   ++S+N +      
Sbjct: 466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 39/223 (17%), Positives = 70/223 (31%), Gaps = 55/223 (24%)

Query: 14  IPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSK 73
              +    S+L  L +G N IS   P     LP L VL L+ N    +    +T    + 
Sbjct: 41  PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS--DKTFAFCTN 98

Query: 74  LRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYS-- 131
           L  + L  N     + +N F        V    L  L         +S N L +      
Sbjct: 99  LTELHLMSNSIQK-IKNNPF--------VKQKNLITL--------DLSHNGLSSTKLGTQ 141

Query: 132 ------RTMNSKGRVMTYNKIPNILAGII------------LSNNRFDGAIPASIANLKG 173
                 + +      ++ NKI  + +  +            LS+N+     P     +  
Sbjct: 142 VQLENLQELL-----LSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR 196

Query: 174 LQ--------FSGRIPQQLAE---LTFLAFFNVSDNYLTGPIP 205
           L             + ++L      T +   ++S++ L+    
Sbjct: 197 LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 36/234 (15%), Positives = 84/234 (35%), Gaps = 26/234 (11%)

Query: 5   RNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGII-E 63
            N+   L+     +   S L+ L L  NQI +  P     + +L  L L +      + E
Sbjct: 154 NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE 213

Query: 64  EPRTSCGFSKLRIIDLSDNRFTGKLPSNSF------------LCWNAMKIVNTSALRYLQ 111
           +       + +R + LS+++ +    + +F            L +N + +V   +  +L 
Sbjct: 214 KLCLELANTSIRNLSLSNSQLST-TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP 272

Query: 112 DVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANL 171
            + + +  +  N +  + +S +++    V   N   +      +S          S   L
Sbjct: 273 QLEYFF--LEYNNI-QHLFSHSLHGLFNVRYLNLKRSFTKQ-SISLASLPKIDDFSFQWL 328

Query: 172 KGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTS 217
           K L+          G        L  L + ++S+++ +      + F +  ++ 
Sbjct: 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 37/226 (16%), Positives = 61/226 (26%), Gaps = 57/226 (25%)

Query: 5   RNENTFLQRIPRSLINC--SKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGII 62
            +  +       + ++   S L  L L  N+IS         L  L VL L  N     +
Sbjct: 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421

Query: 63  EEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSS 122
              +   G   +  I LS N++   L  NSF            +L+ L         +  
Sbjct: 422 -TGQEWRGLENIFEIYLSYNKYLQ-LTRNSF--------ALVPSLQRL--------MLRR 463

Query: 123 NVLGTYDYSRTMNSKGRVMTYNKIPNILAG------IILSNNRFDGAIPASIANLKGLQ- 175
                            +   +  P+          + LSNN         +  L+ L+ 
Sbjct: 464 V---------------ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI 508

Query: 176 ---------------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQ 206
                            G     L  L+ L   N+  N       +
Sbjct: 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 33/215 (15%), Positives = 58/215 (26%), Gaps = 62/215 (28%)

Query: 11  LQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCG 70
           L ++P  L   + +  L L  NQ+     +      +L  L +  N    +  EP     
Sbjct: 16  LTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL--EPELCQK 71

Query: 71  FSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDY 130
              L++++L  N  +  L   +F           + L  L                    
Sbjct: 72  LPMLKVLNLQHNELSQ-LSDKTF--------AFCTNLTEL-------------------- 102

Query: 131 SRTMNSKGRVMTYNKIPNILAGII----------LSNNRFDGAIPASIANLKGLQ----- 175
                     +  N I  I               LS+N        +   L+ LQ     
Sbjct: 103 ---------HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS 153

Query: 176 ---FSGRIPQQLA--ELTFLAFFNVSDNYLTGPIP 205
                    ++L     + L    +S N +    P
Sbjct: 154 NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 25/196 (12%), Positives = 43/196 (21%), Gaps = 73/196 (37%)

Query: 19  INCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIID 78
            +CS      L + Q+ D  P+ +       VL L  N    +         +S+L  +D
Sbjct: 9   ADCS-----HLKLTQVPDDLPTNI------TVLNLTHNQLRRLP--AANFTRYSQLTSLD 55

Query: 79  LSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKG 138
           +  N  +  L                  L+ L                            
Sbjct: 56  VGFNTISK-LEPELCQ--------KLPMLKVL---------------------------- 78

Query: 139 RVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFL 190
                           L +N        + A    L                   +   L
Sbjct: 79  ---------------NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123

Query: 191 AFFNVSDNYLTGPIPQ 206
              ++S N L+     
Sbjct: 124 ITLDLSHNGLSSTKLG 139

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 83.2 bits (206), Expect = 6e-18
 Identities = 36/216 (16%), Positives = 64/216 (29%), Gaps = 49/216 (22%)

Query: 5   RNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEE 64
           RN  +F     +S    + L++L L  N +     ++LG L +L  L  + +    + E 
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSE- 413

Query: 65  PRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNV 124
                    L  +D+S                        S+L  L+        ++ N 
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGI---------FNGLSSLEVLK--------MAGNS 456

Query: 125 LGTYDYSRTMNSKGRVMTYNKIPNILAG------IILSNNRFDGAIPASIANLKGLQ--- 175
                              N +P+I         + LS  + +   P +  +L  LQ   
Sbjct: 457 F----------------QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500

Query: 176 -----FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQ 206
                F          L  L   + S N++     Q
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.4 bits (165), Expect = 9e-13
 Identities = 34/208 (16%), Positives = 52/208 (25%), Gaps = 63/208 (30%)

Query: 8   NTFLQRIPRSLI-NCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPR 66
           +   Q    S+  +   L +L +        F      L  L VL +  N F      P 
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF-LPD 464

Query: 67  TSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLG 126
                  L  +DLS  +    L   +F         + S+L+ L                
Sbjct: 465 IFTELRNLTFLDLSQCQLEQ-LSPTAF--------NSLSSLQVL---------------- 499

Query: 127 TYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ--------FSG 178
                                       +S+N F          L  LQ           
Sbjct: 500 ---------------------------NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 532

Query: 179 RIPQQLAEL-TFLAFFNVSDNYLTGPIP 205
              Q+L    + LAF N++ N       
Sbjct: 533 SKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 30/218 (13%), Positives = 61/218 (27%), Gaps = 54/218 (24%)

Query: 8   NTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRT 67
           N        S  +  +L+ L L   +I         +L  L+ LIL  N    +      
Sbjct: 38  NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA--LGA 95

Query: 68  SCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGT 127
             G S L+ +   +      L +            +   L+ L         V+ N++  
Sbjct: 96  FSGLSSLQKLVAVETNLAS-LENFPI--------GHLKTLKEL--------NVAHNLI-- 136

Query: 128 YDYSRTMNSKGRVMTYNKIPNILAG------IILSNNRFDGAIPASIANLKGLQ------ 175
                            K+P   +       + LS+N+        +  L  +       
Sbjct: 137 --------------QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 176 ------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG 207
                  +   P    E+  L    + +N+ +  + + 
Sbjct: 183 DLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKT 219

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 1/83 (1%)

Query: 14  IPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSK 73
            P +  + S L+ L +  N            L  L VL    N      ++       S 
Sbjct: 486 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF-PSS 544

Query: 74  LRIIDLSDNRFTGKLPSNSFLCW 96
           L  ++L+ N F       SFL W
Sbjct: 545 LAFLNLTQNDFACTCEHQSFLQW 567

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.3 bits (144), Expect = 5e-10
 Identities = 35/227 (15%), Positives = 69/227 (30%), Gaps = 34/227 (14%)

Query: 14  IPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEE-PRTSCGFS 72
           +P    N + LE L L  N+I   + + L  L ++ +L L  ++    +      +    
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 73  KLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYG-----------QVS 121
           +L  + L +N  +  +          +++       +  +                  + 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 122 SNVLGTYDYSRTMNS---------KGRVMTYNKIPNILAG--------IILSNNRFDGAI 164
              L   DY                   +    I  +           + L N +F    
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 165 PASIANLKGLQFS---GRIPQQLAELTFLAFFNVSDNYLT--GPIPQ 206
              + +LK L F+   G       +L  L F ++S N L+  G   Q
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 32/205 (15%), Positives = 53/205 (25%), Gaps = 65/205 (31%)

Query: 11  LQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCG 70
             +IP +L      + L L  N +         + P+L VL L       I         
Sbjct: 19  FYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE--DGAYQS 74

Query: 71  FSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDY 130
            S L  + L+ N     L   +F           S+L+ L                    
Sbjct: 75  LSHLSTLILTGNPIQS-LALGAF--------SGLSSLQKL-------------------- 105

Query: 131 SRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQF---------SGRIP 181
                                  +             I +LK L+          S ++P
Sbjct: 106 -----------------------VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 182 QQLAELTFLAFFNVSDNYLTGPIPQ 206
           +  + LT L   ++S N +      
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCT 167

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.4 bits (134), Expect = 7e-09
 Identities = 33/229 (14%), Positives = 58/229 (25%), Gaps = 43/229 (18%)

Query: 3   YLRNENTFLQRIPRSLINCSKLEFLGL------GINQISDTFPSWLGTLPKLNVLILRSN 56
            LRN    L  +   +   + LE   L          +     S L  L  L +   R  
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 57  IFYGIIEE-PRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLF 115
                +++        + +    L        +   S+              ++L+    
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYN----------FGWQHLE---- 310

Query: 116 PYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNI--------LAGIILSNNR--FDGAIP 165
               + +   G +   +  + K    T NK  N         L  + LS N   F G   
Sbjct: 311 ----LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 166 ASIANLKGLQ---FSG----RIPQQLAELTFLAFFNVSDNYLTGPIPQG 207
            S      L+    S      +      L  L   +   + L       
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 415

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.4 bits (134), Expect = 8e-09
 Identities = 29/155 (18%), Positives = 46/155 (29%), Gaps = 30/155 (19%)

Query: 14  IPRSLINCSKLEFLGLGINQISDTF-PSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFS 72
                   S LE L +  N   + F P     L  L  L L       +   P      S
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS--PTAFNSLS 494

Query: 73  KLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSR 132
            L+++++S N F   L +  +           ++L+ L          S N + T     
Sbjct: 495 SLQVLNMSHNNFFS-LDTFPYK--------CLNSLQVLD--------YSLNHIMTSKKQ- 536

Query: 133 TMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPAS 167
                         P+ LA + L+ N F       
Sbjct: 537 ---------ELQHFPSSLAFLNLTQNDFACTCEHQ 562

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.4 bits (134), Expect = 9e-09
 Identities = 33/199 (16%), Positives = 50/199 (25%), Gaps = 37/199 (18%)

Query: 17  SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRI 76
                       L               LP L  L L  N         ++  G + L+ 
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 77  IDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNS 136
           +DLS N     + SN               L +L            + L          S
Sbjct: 378 LDLSFNGVIT-MSSNFL---------GLEQLEHL--------DFQHSNLKQMSEFSVFLS 419

Query: 137 KGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ--------FSGRI-PQQLAEL 187
                    + N++  + +S+     A       L  L+        F     P    EL
Sbjct: 420 ---------LRNLIY-LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 188 TFLAFFNVSDNYLTGPIPQ 206
             L F ++S   L    P 
Sbjct: 470 RNLTFLDLSQCQLEQLSPT 488

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 71.2 bits (175), Expect = 6e-14
 Identities = 29/226 (12%), Positives = 50/226 (22%), Gaps = 62/226 (27%)

Query: 7   ENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPR 66
           +      +  +      +  + L  NQIS        T   L+ + L  N+   I +   
Sbjct: 418 DGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL 477

Query: 67  TS-----CGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVS 121
                       L  IDL  N+ T  L  +               L  +         +S
Sbjct: 478 KDENENFKNTYLLTSIDLRFNKLTK-LSDDFRAT-------TLPYLVGI--------DLS 521

Query: 122 SNVLGTYDYSRTMNSKGRVMTYNKIP------------NILAGIILSNNRFDGAIPASIA 169
            N                       P             I        NR     P  I 
Sbjct: 522 YNSFSK------------------FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563

Query: 170 NLKGL--------QFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG 207
               L             + +++     ++  ++ DN         
Sbjct: 564 LCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSY 606

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.1 bits (172), Expect = 1e-13
 Identities = 31/232 (13%), Positives = 71/232 (30%), Gaps = 47/232 (20%)

Query: 11  LQRIPRSLI-NCSKLEFLGLGINQISDTFPSWL--GTLPKLNVLILRSNIFYGIIEE--- 64
           +  IP +      ++E L    N++    P+     ++  ++ +    N    +  +   
Sbjct: 365 ITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423

Query: 65  --PRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRY--LQDVLFPYGQV 120
               T      +  I+LS+N+ +   P   F   + +  +N   L    L ++     + 
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSIN---LMGNMLTEIPKNSLKD 479

Query: 121 SSNVLGTYDYSRTMNSKGRVMTYNKI----PNILAG-------IILSNNRFDGAIPASIA 169
            +          +++     + +NK+     +  A        I LS N F    P    
Sbjct: 480 ENENFKNTYLLTSID-----LRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPL 533

Query: 170 NLKGLQ--------------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG 207
           N   L+                   P+ +     L    +  N +   + + 
Sbjct: 534 NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEK 584

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.5 bits (168), Expect = 4e-13
 Identities = 22/213 (10%), Positives = 59/213 (27%), Gaps = 37/213 (17%)

Query: 3   YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGII 62
            +   +  +  + ++++  +KL    +G +                              
Sbjct: 187 QIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE----- 241

Query: 63  EEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSS 122
                      L  +++ +     KLP+          +     ++ +         V+ 
Sbjct: 242 --DLKWDNLKDLTDVEVYNCPNLTKLPTF---------LKALPEMQLI--------NVAC 282

Query: 123 NVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF-DGAIPASIANLKGL------- 174
           N   + +    +    + +    +   +  I +  N      +  S+  +K L       
Sbjct: 283 NRGISGE---QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLY 339

Query: 175 -QFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQ 206
            Q  G++P        LA  N++ N +T     
Sbjct: 340 NQLEGKLP-AFGSEIKLASLNLAYNQITEIPAN 371

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 34/213 (15%), Positives = 59/213 (27%), Gaps = 62/213 (29%)

Query: 14  IPRSLINCSKLEFLGLGINQISD-TFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFS 72
                    K++ + +G N +      + L  + KL +L    N   G +          
Sbjct: 297 ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF---GSEI 353

Query: 73  KLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSR 132
           KL  ++L+ N+ T  +P+N            T  +  L          + N L       
Sbjct: 354 KLASLNLAYNQITE-IPANFC--------GFTEQVENLS--------FAHNKLKY----- 391

Query: 133 TMNSKGRVMTYNKIPNILAG--------IILSNNRFDG-------AIPASIANLKGL--- 174
                        IPNI           I  S N            +  +      +   
Sbjct: 392 -------------IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438

Query: 175 -----QFSGRIPQQLAELTFLAFFNVSDNYLTG 202
                Q S    +  +  + L+  N+  N LT 
Sbjct: 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.6 bits (150), Expect = 7e-11
 Identities = 28/220 (12%), Positives = 51/220 (23%), Gaps = 62/220 (28%)

Query: 11  LQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCG 70
           L+    +  +  KL  L L  NQI++   ++ G   ++  L    N    I      +  
Sbjct: 342 LEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIP-NIFDAKS 400

Query: 71  FSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDY 130
            S +  ID S N     +   +F   +         +  +                    
Sbjct: 401 VSVMSAIDFSYNEIGS-VDGKNFDPLDP-TPFKGINVSSI-------------------- 438

Query: 131 SRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQF-------------- 176
                                   LSNN+         +    L                
Sbjct: 439 -----------------------NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475

Query: 177 -SGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDN 215
                 +       L   ++  N LT  +    +  T   
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPY 514

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 24/217 (11%), Positives = 50/217 (23%), Gaps = 67/217 (30%)

Query: 8   NTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSN------IFYGI 61
               +       N   L  + +         P++L  LP++ ++ +  N           
Sbjct: 235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD 294

Query: 62  IEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVS 121
            +    +    K++II +  N      P  + L            L  L+          
Sbjct: 295 WQALADAPVGEKIQIIYIGYNNLKT-FPVETSLQ-------KMKKLGMLE---------- 336

Query: 122 SNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGL------- 174
                                               N+ +G +P +  +   L       
Sbjct: 337 ---------------------------------CLYNQLEGKLP-AFGSEIKLASLNLAY 362

Query: 175 -QFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQF 210
            Q +            +   + + N L   IP     
Sbjct: 363 NQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDA 398

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.7 bits (145), Expect = 4e-10
 Identities = 26/205 (12%), Positives = 47/205 (22%), Gaps = 26/205 (12%)

Query: 17  SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYG--IIEEPRTSCGFSKL 74
           SL +  ++  L L     S   P  +G L +L VL L S+       +  P+        
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 75  RIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTM 134
                    +                  + S L        P  +              +
Sbjct: 136 EQKQKMRMHYQKTFVDYDPRE-------DFSDLIKDCINSDPQQKSIKKSSRITLKDTQI 188

Query: 135 NSKGRVMTYNKIPNI---------LAGIILSNNRFDGAIPASIANLKGLQF---SGRIPQ 182
                    N I  +         L    + N+ F           +  ++         
Sbjct: 189 G-----QLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL 243

Query: 183 QLAELTFLAFFNVSDNYLTGPIPQG 207
           +   L  L    V +      +P  
Sbjct: 244 KWDNLKDLTDVEVYNCPNLTKLPTF 268

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 25/223 (11%), Positives = 52/223 (23%), Gaps = 50/223 (22%)

Query: 6   NENTFLQRIPRSLINCSKLEFLGLGINQIS----DTFPSWLGTLPKLNVLILRSNIFYGI 61
                  R+P ++   ++LE L LG +          P  +               +   
Sbjct: 89  EGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKT 148

Query: 62  IEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMK--------------IVNTSAL 107
             +      FS L    ++ +     +  +S +     +              ++  + L
Sbjct: 149 FVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKL 208

Query: 108 RYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPAS 167
           R           + ++                      I            +        
Sbjct: 209 RQF--------YMGNSPF----------------VAENICEAWENENSEYAQQYKTEDLK 244

Query: 168 IANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTG 202
             NLK L            ++P  L  L  +   NV+ N    
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 11/89 (12%)

Query: 11  LQRIPRSLINCSKLEFLGLG------INQISDTFPSWLGTLPKLNVLILRSNIFYGIIEE 64
             + P   +N S L+  G+        N+    +P  +   P L  L + SN    + E+
Sbjct: 525 FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK 584

Query: 65  PRTSCGFSKLRIIDLSDNRFTGKLPSNSF 93
                    + ++D+ DN       S   
Sbjct: 585 I-----TPNISVLDIKDNPNISIDLSYVC 608

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 28/174 (16%), Positives = 46/174 (26%), Gaps = 43/174 (24%)

Query: 11  LQRIPRSLINCSKLEFLGLGINQISDTFPSW-LGTLPKLNVLILRSNIFYGIIEEPRTSC 69
           L+    +  N   L  + L  N+++     +   TLP L  + L  N F     +P  S 
Sbjct: 477 LKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSS 536

Query: 70  GFSKLRI---IDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLG 126
                 I    D   NR   + P           I    +L  LQ        + SN + 
Sbjct: 537 TLKGFGIRNQRDAQGNRTLREWPEG---------ITLCPSLTQLQ--------IGSNDIR 579

Query: 127 TYDYSRTMNSKGRVMTYNKIP-NILAGII---LSNNRFDGAIPASIANLKGLQF 176
                              +   I   I    + +N       + +        
Sbjct: 580 K------------------VNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGM 615

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 70.3 bits (172), Expect = 1e-13
 Identities = 32/225 (14%), Positives = 56/225 (24%), Gaps = 57/225 (25%)

Query: 4   LRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIE 63
             +     +    S  N   L  + L         P +L  LP+L  L +  N      +
Sbjct: 473 NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQ 532

Query: 64  E-------PRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFP 116
                           K++I  +  N      P+++ L            L  L      
Sbjct: 533 LKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQ-------KMVKLGLL------ 578

Query: 117 YGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNI-----LAGIILSNNRFDGAIPASI--- 168
                 N +                    +        L  + L  N+ +  IP      
Sbjct: 579 --DCVHNKV------------------RHLEAFGTNVKLTDLKLDYNQIEE-IPEDFCAF 617

Query: 169 -ANLKGLQFSG----RIPQ--QLAELTFLAFFNVSDNYLTGPIPQ 206
              ++GL FS      IP       +  +   + S N +      
Sbjct: 618 TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.2 bits (164), Expect = 1e-12
 Identities = 34/239 (14%), Positives = 61/239 (25%), Gaps = 41/239 (17%)

Query: 14  IPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEE-----PRTS 68
                        + L  N+I         T   ++ +IL +N+   I E          
Sbjct: 665 CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724

Query: 69  CGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTY 128
                L  IDL  N+ T  L  +               L  +         VS N   ++
Sbjct: 725 KNTYLLTTIDLRFNKLTS-LSDDFRAT-------TLPYLSNM--------DVSYNCFSSF 768

Query: 129 DYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQF---SG----RIP 181
                 +S+ +         I        NR     P  I     L           ++ 
Sbjct: 769 PTQPLNSSQLKAF------GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVD 822

Query: 182 QQLAELTFLAFFNVSDNYLT-GPIPQGKQFATFDNTSFDGNSGLCGKPLSKGCDSGEAP 239
           ++L     L   +++DN      +     +          +         +GCD+    
Sbjct: 823 EKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYD----KTQDIRGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.1 bits (161), Expect = 3e-12
 Identities = 29/236 (12%), Positives = 64/236 (27%), Gaps = 61/236 (25%)

Query: 11  LQRIPRSL-INCSKLEFLGLGINQISDTFPSW--LGTLPKLNVLILRSNIFYGIIEE--- 64
           ++ IP        ++E LG   N++    P+     ++  +  +    N           
Sbjct: 607 IEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665

Query: 65  PRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNV 124
                       + LS N      P+  F           S +  +         +S+N+
Sbjct: 666 SMDDYKGINASTVTLSYNEIQK-FPTELF--------ATGSPISTI--------ILSNNL 708

Query: 125 LGTYDYSRTMNSKGRV----------MTYNKIPNI-----------LAGIILSNNRFDGA 163
           + +   +      G            + +NK+ ++           L+ + +S N F   
Sbjct: 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS- 767

Query: 164 IPASIANLKGLQ--------------FSGRIPQQLAELTFLAFFNVSDNYLTGPIP 205
            P    N   L+                 + P  +     L    +  N +   + 
Sbjct: 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VD 822

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.4 bits (136), Expect = 4e-09
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 12/93 (12%)

Query: 8   NTFLQRIPRSLINCSKLEFLGL------GINQISDTFPSWLGTLPKLNVLILRSNIFYGI 61
                  P   +N S+L+  G+        N+I   +P+ + T P L  L + SN    +
Sbjct: 762 YNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV 821

Query: 62  IEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFL 94
            E+        +L I+D++DN     +   S  
Sbjct: 822 DEK-----LTPQLYILDIADNPNIS-IDVTSVC 848

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.9 bits (132), Expect = 1e-08
 Identities = 24/224 (10%), Positives = 53/224 (23%), Gaps = 34/224 (15%)

Query: 17  SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRI 76
            L N  ++  L L         P  +G L +L VL   ++                   +
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLF--GDEELTPDM 375

Query: 77  IDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNS 136
            +   +R               + + +       ++       +  +   +   ++  N 
Sbjct: 376 SEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM--KPIKKDSRISLKDTQIGNL 433

Query: 137 KGRV-----------------MTYNKIPNI-----LAGIILSNNRFDGAIPASIANLKGL 174
             R+                    +                   +       S +NLK L
Sbjct: 434 TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDL 493

Query: 175 Q--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQF 210
                       ++P  L +L  L   N++ N           +
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADW 537

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 5/78 (6%)

Query: 6   NENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEP 65
             N  L++ P  +  C  L  L +G N I       L   P+L +L +  N    I  + 
Sbjct: 790 EGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISI--DV 844

Query: 66  RTSCGFSKLRIIDLSDNR 83
            + C + +  +  L  ++
Sbjct: 845 TSVCPYIEAGMYVLLYDK 862

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 36/225 (16%), Positives = 55/225 (24%), Gaps = 36/225 (16%)

Query: 14  IPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSK 73
              +L     L+ L      IS      L     L  L L SN    I           K
Sbjct: 97  AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK--LPKGFPTEK 154

Query: 74  LRIIDLSDNRFTGKLPSNSF------------LCWNAMKIVNTSA--LRYLQDVLFPYGQ 119
           L+++D  +N     L                 L  N +  +   A      Q + F   Q
Sbjct: 155 LKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213

Query: 120 VSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGII------------LSNNRFDGAIPAS 167
               +      S   +            +I   +             L  + F      +
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT 273

Query: 168 IANLKGLQF---SG----RIPQQLAELTFLAFFNVSDNYLTGPIP 205
                GLQ    +      +P  L  L+ L    +S N       
Sbjct: 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ 318

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 34/226 (15%), Positives = 62/226 (27%), Gaps = 52/226 (23%)

Query: 3   YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLG--TLPKLNVLILRSNIFYG 60
            L      +  I     + +  + L  G  Q        L   T+  L +          
Sbjct: 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 61  IIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQV 120
           I            +  I+L  + F   + SN+F           S L+ L         +
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFH--------CFSGLQEL--------DL 285

Query: 121 SSNVLGTYDYSRTMNSKGRVMTYNKIPNILAG------IILSNNRFDGAIPASIANLKGL 174
           ++  L                  +++P+ L G      ++LS N+F+     S +N   L
Sbjct: 286 TATHL------------------SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327

Query: 175 QF---------SGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFA 211
                             L  L  L   ++S + +        Q  
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 31/204 (15%), Positives = 55/204 (26%), Gaps = 39/204 (19%)

Query: 14  IPRSLINCSKLEFLGLGINQISDT-FPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFS 72
              S  N   L  L +  N          L  L  L  L L  +               S
Sbjct: 317 CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376

Query: 73  KLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSR 132
            L+ ++LS N     L + +F             L  L         ++   L      +
Sbjct: 377 HLQSLNLSYNEPLS-LKTEAFK--------ECPQLELL--------DLAFTRL------K 413

Query: 133 TMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ-----------FSGRIP 181
             +++     +  +  +   + LS++  D +       L  LQ            + +  
Sbjct: 414 VKDAQS---PFQNLHLLKV-LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469

Query: 182 QQLAELTFLAFFNVSDNYLTGPIP 205
             L  L  L    +S   L+    
Sbjct: 470 NSLQTLGRLEILVLSFCDLSSIDQ 493

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 30/216 (13%), Positives = 62/216 (28%), Gaps = 47/216 (21%)

Query: 5   RNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEE 64
            ++          L N S L+ L L  N+            P+L +L L         + 
Sbjct: 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK-DA 417

Query: 65  PRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNV 124
                    L++++LS +          F            AL++L         +  N 
Sbjct: 418 QSPFQNLHLLKVLNLSHSLLDI-SSEQLF--------DGLPALQHLN--------LQGNH 460

Query: 125 LGTYDYSRTMNSKGRVMTYNKIPNILAG------IILSNNRFDGAIPASIANLKGLQ--- 175
               +                  N L        ++LS          +  +LK +    
Sbjct: 461 FPKGNIQ--------------KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506

Query: 176 -----FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQ 206
                 +    + L+ L  + + N++ N+++  +P 
Sbjct: 507 LSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS 541

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.8 bits (135), Expect = 6e-09
 Identities = 26/211 (12%), Positives = 53/211 (25%), Gaps = 39/211 (18%)

Query: 14  IPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSK 73
              +      L FL L   QI         +  +L+ L+L +N    +        G   
Sbjct: 49  QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA--ETALSGPKA 106

Query: 74  LRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRT 133
           L+ +       +  +              N   L  L         + SN + +    + 
Sbjct: 107 LKHLFFIQTGISS-IDFIPL--------HNQKTLESL--------YLGSNHISSIKLPKG 149

Query: 134 MNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ---------FSGRIPQQL 184
             ++            L  +   NN         +++L+                I    
Sbjct: 150 FPTEK-----------LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198

Query: 185 AELTFLAFFNVSDNYLTGPIPQGKQFATFDN 215
            +       N         I +G + +T  +
Sbjct: 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 32/229 (13%), Positives = 64/229 (27%), Gaps = 45/229 (19%)

Query: 3   YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGII 62
           +   ++  +       +    +E + L  +   +   +       L  L L +     + 
Sbjct: 235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL- 293

Query: 63  EEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSS 122
             P    G S L+ + LS N+F   L   S          N  +L +L         +  
Sbjct: 294 --PSGLVGLSTLKKLVLSANKFEN-LCQISA--------SNFPSLTHL--------SIKG 334

Query: 123 NVLGTYDYSRTMNSKGRV----MTYNKIPNI------------LAGIILSNNRFDGAIPA 166
           N       +  + +   +    ++++ I               L  + LS N        
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE 394

Query: 167 SIANLKGLQ--------FSGRIPQ-QLAELTFLAFFNVSDNYLTGPIPQ 206
           +      L+           +  Q     L  L   N+S + L     Q
Sbjct: 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 26/162 (16%), Positives = 52/162 (32%), Gaps = 30/162 (18%)

Query: 15  PRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTS-CGFSK 73
                N   L+ L L  + +  +       LP L  L L+ N F     +   S     +
Sbjct: 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477

Query: 74  LRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRT 133
           L I+ LS    +  +  ++F         +   + ++         +S N L +      
Sbjct: 478 LEILVLSFCDLSS-IDQHAF--------TSLKMMNHVD--------LSHNRLTSSSIEAL 520

Query: 134 MNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ 175
            + KG              + L++N     +P+ +  L   +
Sbjct: 521 SHLKGIY------------LNLASNHISIILPSLLPILSQQR 550

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 14  IPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSK 73
              +  +   +  + L  N+++ +    L  L  +  L L SN    I+  P      S+
Sbjct: 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIIL--PSLLPILSQ 548

Query: 74  LRIIDLSDNRFTGKLPSNSFLCW 96
            R I+L  N       +  FL W
Sbjct: 549 QRTINLRQNPLDCTCSNIYFLEW 571

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.6 bits (150), Expect = 9e-11
 Identities = 31/215 (14%), Positives = 56/215 (26%), Gaps = 49/215 (22%)

Query: 5   RNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEE 64
           RN  +F      S +  + L  L L  N       +    L +L  L  + +    + E 
Sbjct: 359 RNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTE- 416

Query: 65  PRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNV 124
                   KL  +D+S            F        +  ++L  L+        ++ N 
Sbjct: 417 FSAFLSLEKLLYLDISYTNTKI-DFDGIF--------LGLTSLNTLK--------MAGNS 459

Query: 125 LGTYDYSRTMNSKGRVMTYNKIPNILAG------IILSNNRFDGAIPASIANLKGL---- 174
                              N + N+ A       + LS  + +         L  L    
Sbjct: 460 F----------------KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503

Query: 175 ----QFSGRIPQQLAELTFLAFFNVSDNYLTGPIP 205
                          +L  L+  + S N +     
Sbjct: 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 29/215 (13%), Positives = 58/215 (26%), Gaps = 58/215 (26%)

Query: 3   YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFP-SWLGTLPKLNVLILRSNIFYGI 61
           +L         +  + +   +L+ L    + +      S   +L KL  L +        
Sbjct: 380 HLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439

Query: 62  IEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVS 121
                   G + L  + ++ N F     SN F         NT+ L +L           
Sbjct: 440 F--DGIFLGLTSLNTLKMAGNSFKDNTLSNVF--------ANTTNLTFLD---------- 479

Query: 122 SNVLGTYDYSRTMNSKGRVMTYNKI----PNILAG------IILSNNRFDGAIPASIANL 171
                              ++  ++      +         + +S+N       +    L
Sbjct: 480 -------------------LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520

Query: 172 KGL--------QFSGRIPQQLAELTFLAFFNVSDN 198
             L        +              LAFFN+++N
Sbjct: 521 YSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 3/80 (3%)

Query: 14  IPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSK 73
              S  N S+L++L L   +I          L  L+ LIL  N        P +  G + 
Sbjct: 48  KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS--PGSFSGLTS 105

Query: 74  LRIIDLSDNRFTGKLPSNSF 93
           L  +   + +    L S   
Sbjct: 106 LENLVAVETKLAS-LESFPI 124

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 34/226 (15%), Positives = 62/226 (27%), Gaps = 45/226 (19%)

Query: 3   YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGII 62
            +      ++ +   +    K + L +   Q+   FP+    LP L  L L  N      
Sbjct: 289 AMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQ-FPT--LDLPFLKSLTLTMNK----G 340

Query: 63  EEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSS 122
                      L  +DLS N  +      S+        + T++LR+L         +S 
Sbjct: 341 SISFKKVALPSLSYLDLSRNALS-FSGCCSY------SDLGTNSLRHLD--------LSF 385

Query: 123 NVLGTYDYSRTMNSKGRV--MTYNKIPNI-----------LAGIILSNNRFDGAIPASIA 169
           N       +     + +     ++ +  +           L  + +S             
Sbjct: 386 NGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445

Query: 170 NLKGLQ--------FSGRIPQQ-LAELTFLAFFNVSDNYLTGPIPQ 206
            L  L         F         A  T L F ++S   L      
Sbjct: 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 3/76 (3%)

Query: 11  LQRIPRSLI-NCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSC 69
           L++I   +     +L+ L +  N +     S    L  L+ L    N             
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK--GILQH 542

Query: 70  GFSKLRIIDLSDNRFT 85
               L   +L++N   
Sbjct: 543 FPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 26/227 (11%), Positives = 62/227 (27%), Gaps = 37/227 (16%)

Query: 14  IPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEE-PRTSCGFS 72
           +P    N + L  + L  N I     + L  L +   + L  ++    I+     +    
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI 204

Query: 73  KLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQ---------DVLFPYGQVSSN 123
           KL  + L  N  +  +          + +       +            ++     V+ +
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264

Query: 124 VLGTYDYSRTMNSKGRVMT-------------YNKIPNI--------LAGIILSNNRFDG 162
                  + T +    ++                 I  +           + +   +   
Sbjct: 265 EF---RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQ 321

Query: 163 AIPASIANLKGLQFSG---RIPQQLAELTFLAFFNVSDNYLTGPIPQ 206
                +  LK L  +     I  +   L  L++ ++S N L+     
Sbjct: 322 FPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCC 368

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 28/226 (12%), Positives = 59/226 (26%), Gaps = 43/226 (19%)

Query: 6   NENTFLQRIPRSLI-NCSKLEFLGL------GINQISDTFPSWLGTLPKLNVLILRSNIF 58
             N     I ++ + N + L    L          +    PS +  L  + +   R    
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271

Query: 59  YGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSF--------LCWNAMKIVNTSALRYL 110
               ++       + +  + L+       L             +    +K   T  L +L
Sbjct: 272 NDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFL 330

Query: 111 QDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIA- 169
           + +      ++ N          + S             L+ + LS N    +   S + 
Sbjct: 331 KSL-----TLTMNKGSISFKKVALPS-------------LSYLDLSRNALSFSGCCSYSD 372

Query: 170 ----NLKGLQFSG----RIPQQLAELTFLAFFNVSDNYLTGPIPQG 207
               +L+ L  S      +      L  L   +   + L       
Sbjct: 373 LGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFS 418

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 29/205 (14%), Positives = 49/205 (23%), Gaps = 65/205 (31%)

Query: 11  LQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCG 70
           L ++P  +   S  + + L  N +            +L  L L       I  E +   G
Sbjct: 23  LSKVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI--EDKAWHG 78

Query: 71  FSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDY 130
              L  + L+ N         SF           ++L  L                    
Sbjct: 79  LHHLSNLILTGNPIQS-FSPGSF--------SGLTSLENLV------------------- 110

Query: 131 SRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQF---------SGRIP 181
                                       +        I  L  L+          S ++P
Sbjct: 111 ------------------------AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP 146

Query: 182 QQLAELTFLAFFNVSDNYLTGPIPQ 206
              + LT L   ++S NY+      
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTITVN 171

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.4 bits (131), Expect = 2e-08
 Identities = 35/198 (17%), Positives = 58/198 (29%), Gaps = 21/198 (10%)

Query: 15  PRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKL 74
             +  N   L  L LG ++I    P     L  L  L L        + +         L
Sbjct: 66  KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125

Query: 75  RIIDLSDNRFTGKLPSNSF----------LCWNAMKIVNTSALRYLQDVLFPYGQVSSNV 124
             +DLS N+        SF             N + +V    L  LQ     +  +++N 
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185

Query: 125 LGTYDYSRTMNSKGRVMTYNKIPNI-LAGIILSNNRFDGAIPASIANLKGLQFSGRIPQQ 183
           L       +  S       N   N+ L  + +S N +   I  + +N      S      
Sbjct: 186 L------YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA----ISKSQAFS 235

Query: 184 LAELTFLAFFNVSDNYLT 201
           L     +       + + 
Sbjct: 236 LILAHHIMGAGFGFHNIK 253

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 39/219 (17%), Positives = 64/219 (29%), Gaps = 37/219 (16%)

Query: 15  PRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKL 74
            R       L+ L L  N+I+         L  L VL L  N+   +        G  K+
Sbjct: 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL--YSSNFYGLPKV 340

Query: 75  RIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTM 134
             IDL  N     +   +F             L+ L         +  N L T  +    
Sbjct: 341 AYIDLQKNHIA-IIQDQTF--------KFLEKLQTL--------DLRDNALTTIHFIP-- 381

Query: 135 NSKGRVMTYNKIPNILAG------IILSNNRF----DGAIPASIANLKGLQFSG----RI 180
           +     ++ NK+  +         I LS NR            + +L+ L  +       
Sbjct: 382 SIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441

Query: 181 PQQ--LAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTS 217
                 +E   L    + +N L         +  F+  S
Sbjct: 442 SGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS 480

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.4 bits (118), Expect = 7e-07
 Identities = 29/212 (13%), Positives = 68/212 (32%), Gaps = 24/212 (11%)

Query: 14  IPRSLINCSKLEFLGLGINQISDTFPSWLGTL--PKLNVLILRSNIFYGIIEEPRTSCG- 70
           +  S    + L+ +    NQI       L  L    L+   L +N  Y  +      C  
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 71  ---FSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGT 127
                 L I+D+S N +T  +  N     +  +  +     ++    F +  +      T
Sbjct: 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259

Query: 128 YDYSRTMNSKGRVMTYNKIPNILAGII----------LSNNRFDGAIPASIANLKGLQ-- 175
           +      + +   +++  + ++ + +           L+ N+ +     +   L  LQ  
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319

Query: 176 ------FSGRIPQQLAELTFLAFFNVSDNYLT 201
                            L  +A+ ++  N++ 
Sbjct: 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 38/217 (17%), Positives = 73/217 (33%), Gaps = 35/217 (16%)

Query: 3   YLRNENTFLQRIPR-SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGI 61
            L      + +I   +      L+ L L  N + + + S    LPK+  + L+ N    I
Sbjct: 294 VLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII 353

Query: 62  IEEPRTSCGFSKLRIIDLSDNRFT--GKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQ 119
             + +T     KL+ +DL DN  T    +PS   +  +  K+V    +    +++     
Sbjct: 354 --QDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLI----H 407

Query: 120 VSSNVLGTYDYSRTM----NSKGRVMTYNKIPNILAG-----------IILSNNRFDGAI 164
           +S N L   D    +    + +  ++  N+  +               + L  N    A 
Sbjct: 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAW 467

Query: 165 PASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLT 201
              +                  L+ L    ++ NYL 
Sbjct: 468 ETELC-----------WDVFEGLSHLQVLYLNHNYLN 493

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.9 bits (124), Expect = 1e-07
 Identities = 35/210 (16%), Positives = 62/210 (29%), Gaps = 51/210 (24%)

Query: 3   YLRNENTFLQRIPRS-LINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGI 61
            +  +N+ ++++P + L +  ++E L L   QI +           +  L +  N    +
Sbjct: 55  IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL 114

Query: 62  IEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVS 121
              P        L ++ L  N  +  LP   F         NT  L  L           
Sbjct: 115 --PPHVFQNVPLLTVLVLERNDLS-SLPRGIF--------HNTPKLTTLS---------- 153

Query: 122 SNVLGTYDYSRTMNSKGRVMTYNKIPNILAGI----------ILSNNRFDGAIPASIANL 171
                              M+ N +  I               LS+NR      + I +L
Sbjct: 154 -------------------MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL 194

Query: 172 KGLQFSGRIPQQLAELTFLAFFNVSDNYLT 201
                S  +   LA    +   + S N + 
Sbjct: 195 FHANVSYNLLSTLAIPIAVEELDASHNSIN 224

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 14/118 (11%)

Query: 3   YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGII 62
            L+ ++  L      L+N   L  + L  N++          + +L  L + +N    ++
Sbjct: 236 ILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN---RLV 291

Query: 63  EEPRTSCGFSKLRIIDLSDNRFTGKLPSNSF---------LCWNAMKIVNTSALRYLQ 111
                      L+++DLS N     +  N           L  N++  +  S    L+
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLK 348

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.5 bits (110), Expect = 6e-06
 Identities = 39/211 (18%), Positives = 66/211 (31%), Gaps = 36/211 (17%)

Query: 15  PRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKL 74
           P    N   L  L L  N +S          PKL  L + +N    I  E  T    + L
Sbjct: 116 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI--EDDTFQATTSL 173

Query: 75  RIIDLSDNRFTGKLPSNSF-------LCWNAMK-IVNTSALRYLQDVLFPYGQVSSNVLG 126
           + + LS NR T  +  +         + +N +  +    A+  L          S N + 
Sbjct: 174 QNLQLSSNRLT-HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELD--------ASHNSIN 224

Query: 127 TYDYSRTMNSKGRVMTYNKIPNI--------LAGIILSNNRFDGAIPASI----ANLKGL 174
                  +      + +N + +         L  + LS N  +  I          L+ L
Sbjct: 225 VVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERL 283

Query: 175 QFSG----RIPQQLAELTFLAFFNVSDNYLT 201
             S      +      +  L   ++S N+L 
Sbjct: 284 YISNNRLVALNLYGQPIPTLKVLDLSHNHLL 314

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 35/210 (16%), Positives = 62/210 (29%), Gaps = 51/210 (24%)

Query: 3   YLRNENTFLQRIPRS-LINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGI 61
            +  +N+ ++++P + L +  ++E L L   QI +           +  L +  N    +
Sbjct: 49  IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL 108

Query: 62  IEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVS 121
              P        L ++ L  N  +  LP   F         NT  L  L           
Sbjct: 109 --PPHVFQNVPLLTVLVLERNDLS-SLPRGIF--------HNTPKLTTLS---------- 147

Query: 122 SNVLGTYDYSRTMNSKGRVMTYNKIPNILAGI----------ILSNNRFDGAIPASIANL 171
                              M+ N +  I               LS+NR      + I +L
Sbjct: 148 -------------------MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL 188

Query: 172 KGLQFSGRIPQQLAELTFLAFFNVSDNYLT 201
                S  +   LA    +   + S N + 
Sbjct: 189 FHANVSYNLLSTLAIPIAVEELDASHNSIN 218

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 14/118 (11%)

Query: 3   YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGII 62
            L+ ++  L      L+N   L  + L  N++          + +L  L + +N    ++
Sbjct: 230 ILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN---RLV 285

Query: 63  EEPRTSCGFSKLRIIDLSDNRFTGKLPSNSF---------LCWNAMKIVNTSALRYLQ 111
                      L+++DLS N     +  N           L  N++  +  S    L+
Sbjct: 286 ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLK 342

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 36/215 (16%), Positives = 66/215 (30%), Gaps = 36/215 (16%)

Query: 11  LQRIPRSL-INCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSC 69
           L  +PR +  N  KL  L +  N +             L  L L SN    +        
Sbjct: 129 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-----DLS 183

Query: 70  GFSKLRIIDLSDNRFTGKLPSNSFLCW-----NAMKIVNTSALRYLQDVLFPYGQVSSNV 124
               L   ++S N  +  L     +       N++ +V       L  +     ++  N 
Sbjct: 184 LIPSLFHANVSYNLLS-TLAIPIAVEELDASHNSINVVRGPVNVELTIL-----KLQHNN 237

Query: 125 LGTYDYSRTMNSKGRV-MTYNKIPNI----------LAGIILSNNRFDGAIPASIANLKG 173
           L    +         V ++YN++  I          L  + +SNNR   A+      +  
Sbjct: 238 LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPT 296

Query: 174 LQF---SG----RIPQQLAELTFLAFFNVSDNYLT 201
           L+    S      + +   +   L    +  N + 
Sbjct: 297 LKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 13/75 (17%), Positives = 21/75 (28%), Gaps = 6/75 (8%)

Query: 11  LQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCG 70
           L  +         L+ L L  N +            +L  L L  N    +         
Sbjct: 284 LVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLS-----T 337

Query: 71  FSKLRIIDLSDNRFT 85
              L+ + LS N + 
Sbjct: 338 HHTLKNLTLSHNDWD 352

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 32/205 (15%), Positives = 61/205 (29%), Gaps = 61/205 (29%)

Query: 4   LRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIE 63
            R     +Q++   L   +    L +G + ++ T P  L     +  L++  N    +  
Sbjct: 24  SRGRAAVVQKMRACL--NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLTSLPA 78

Query: 64  EPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSN 123
                    +LR +++S N+ T  LP                 L                
Sbjct: 79  L------PPELRTLEVSGNQLT-SLPVL---------PPGLLELSIFS------------ 110

Query: 124 VLGTYDYSRTMNSKGRVMTYNKIPNILAGII---LSNNRFDGAIPASIANLKGLQFSG-- 178
                                 +P + +G+    +  N+   ++P     L+ L  S   
Sbjct: 111 -----------------NPLTHLPALPSGLCKLWIFGNQL-TSLPVLPPGLQELSVSDNQ 152

Query: 179 --RIPQQLAELTFLAFFNVSDNYLT 201
              +P   +EL  L      +N LT
Sbjct: 153 LASLPALPSELCKL---WAYNNQLT 174

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 39/205 (19%), Positives = 67/205 (32%), Gaps = 57/205 (27%)

Query: 11  LQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCG 70
           L  +P       +L      +  +             L  L +  N    +   P     
Sbjct: 93  LTSLPVLPPGLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQLTSLPVLP----- 140

Query: 71  FSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDY 130
              L+ + +SDN+    LP+              S L  L           +N L +   
Sbjct: 141 -PGLQELSVSDNQLA-SLPALP------------SELCKL--------WAYNNQLTSLPM 178

Query: 131 S----RTMNSKGRVMTYNKIPNI------LAGIILSNNRFDGAIPASIANLKGLQFSG-- 178
                + ++     ++ N++ ++      L  +   NNR   ++PA  + LK L  SG  
Sbjct: 179 LPSGLQELS-----VSDNQLASLPTLPSELYKLWAYNNRLT-SLPALPSGLKELIVSGNR 232

Query: 179 --RIPQQLAELTFLAFFNVSDNYLT 201
              +P   +EL  L    VS N LT
Sbjct: 233 LTSLPVLPSELKEL---MVSGNRLT 254

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.0 bits (109), Expect = 9e-06
 Identities = 41/209 (19%), Positives = 76/209 (36%), Gaps = 46/209 (22%)

Query: 3   YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGII 62
            L      L  +P        L+ L +  NQ++ + P+    L KL      +N    + 
Sbjct: 125 KLWIFGNQLTSLPVLPPG---LQELSVSDNQLA-SLPALPSELCKLW---AYNNQLTSLP 177

Query: 63  EEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSS 122
             P      S L+ + +SDN+    LP+              S L  L           +
Sbjct: 178 MLP------SGLQELSVSDNQLA-SLPTLP------------SELYKLW--------AYN 210

Query: 123 NVLGTYDYSRTMNSKGRVMTYNKIPNI------LAGIILSNNRFDGAIPASIANLKGLQF 176
           N L +     +   K  +++ N++ ++      L  +++S NR   ++P   + L  L  
Sbjct: 211 NRLTSLPALPS-GLKELIVSGNRLTSLPVLPSELKELMVSGNRLT-SLPMLPSGLLSLSV 268

Query: 177 SG----RIPQQLAELTFLAFFNVSDNYLT 201
                 R+P+ L  L+     N+  N L+
Sbjct: 269 YRNQLTRLPESLIHLSSETTVNLEGNPLS 297

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 34/210 (16%), Positives = 66/210 (31%), Gaps = 48/210 (22%)

Query: 11  LQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCG 70
           L      L + S L  L L  N + +     L   P +  L   +N    +         
Sbjct: 70  LYETL-DLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVSCS-----R 118

Query: 71  FSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDY 130
               + I L++N+ T  L                S ++YL         +  N + T ++
Sbjct: 119 GQGKKNIYLANNKIT-MLRDLDEG--------CRSRVQYLD--------LKLNEIDTVNF 161

Query: 131 SRTMNSKGRV----MTYNKIPNILAGII--------LSNNRFDGAIPASIANLKGLQF-- 176
           +    S   +    + YN I ++   ++        LS+N+    +     +  G+ +  
Sbjct: 162 AELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWIS 220

Query: 177 -SG----RIPQQLAELTFLAFFNVSDNYLT 201
                   I + L     L  F++  N   
Sbjct: 221 LRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 5/110 (4%)

Query: 3   YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGII 62
           +L  +  F+  +    +  +KL+ L L  N+++        +   +  + LR+N    ++
Sbjct: 173 HLNLQYNFIYDVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN---KLV 227

Query: 63  EEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQD 112
              +       L   DL  N F      + F     ++ V    ++ L  
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 28/201 (13%), Positives = 59/201 (29%), Gaps = 45/201 (22%)

Query: 20  NCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL 79
           N ++ +   +  + +     S   +   +  L L  N    I         F+KL +++L
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI--SAADLAPFTKLELLNL 65

Query: 80  SDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYS---RTMNS 136
           S N    +             + + S LR L         +++N +          T++ 
Sbjct: 66  SSNVLY-ETLD----------LESLSTLRTL--------DLNNNYVQELLVGPSIETLH- 105

Query: 137 KGRVMTYNKIPNILAGI-------ILSNNRFDGAIPASIANLKGLQF---------SGRI 180
                  N I  +            L+NN+              +Q+         +   
Sbjct: 106 ----AANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 181 PQQLAELTFLAFFNVSDNYLT 201
            +  A    L   N+  N++ 
Sbjct: 162 AELAASSDTLEHLNLQYNFIY 182

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 29/212 (13%), Positives = 64/212 (30%), Gaps = 41/212 (19%)

Query: 8   NTFLQRIPR-SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPR 66
              L+ +   S  +  +L+ L L   +I         +L  L+ LIL  N    +     
Sbjct: 37  FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL--ALG 94

Query: 67  TSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLG 126
              G S L+ +   +      L +            +   L+ L         V+ N++ 
Sbjct: 95  AFSGLSSLQKLVAVETNLA-SLENFPI--------GHLKTLKEL--------NVAHNLIQ 137

Query: 127 TYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSGR------- 179
           ++      ++         + N L  + LS+N+        +  L  +            
Sbjct: 138 SFKLPEYFSN---------LTN-LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 180 ----IPQQLAELTFLAFFNVSDNYLTGPIPQG 207
               I     +   L    + +N+ +  + + 
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT 219

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.9 bits (117), Expect = 9e-07
 Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 14/121 (11%)

Query: 3   YLRNENTFLQRIPRS--LINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYG 60
           +L  +++ L+++      ++   L +L +        F      L  L VL +  N F  
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459

Query: 61  IIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSF----------LCWNAMKIVNTSALRYL 110
               P        L  +DLS  +   +L   +F          +  N +K V       L
Sbjct: 460 NF-LPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517

Query: 111 Q 111
            
Sbjct: 518 T 518

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 39/229 (17%), Positives = 61/229 (26%), Gaps = 71/229 (31%)

Query: 17  SLINCSKLEFLGLGINQIS--DTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKL 74
           S ++   LEFL L  N +S              L  L L  N   G+I       G  +L
Sbjct: 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN---GVITMSSNFLGLEQL 398

Query: 75  RIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTM 134
             +D   +        + FL        +   L YL                        
Sbjct: 399 EHLDFQHSNLKQMSEFSVFL--------SLRNLIYLD----------------------- 427

Query: 135 NSKGRVMTYNKIPNILAGII----------LSNNRFDGAIPASI----ANLKGLQFSG-- 178
                 +++        GI           ++ N F       I     NL  L  S   
Sbjct: 428 ------ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 179 --RIPQQ-LAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGL 224
             ++       L+ L   N++ N L           +  +  FD  + L
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMASNQLK----------SVPDGIFDRLTSL 520

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 2/80 (2%)

Query: 15  PRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKL 74
           P        L FL L   Q+    P+   +L  L VL + SN    +          + L
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV--PDGIFDRLTSL 520

Query: 75  RIIDLSDNRFTGKLPSNSFL 94
           + I L  N +    P   +L
Sbjct: 521 QKIWLHTNPWDCSCPRIDYL 540

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 38/211 (18%), Positives = 65/211 (30%), Gaps = 60/211 (28%)

Query: 8   NTFLQRIPRSLI-NCSKLEFLGLGINQISDTF---PSWLGTLPKLNVLILRSNIFYGIIE 63
           N+ +  +P S   +   LEFL L  N + + +    +  G  P L  L+L  N    + +
Sbjct: 319 NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378

Query: 64  EPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSN 123
                     L  +D+S N F   +P +               +R+L             
Sbjct: 379 TGEILLTLKNLTSLDISRNTFH-PMPDS---------CQWPEKMRFLN------------ 416

Query: 124 VLGTYDYSRTMNSKGRVMTYNKIPNILAGI-------ILSNNRFDGAIPASIANLKGLQF 176
                            ++   I  +   I        +SNN  D +    +  L+ L  
Sbjct: 417 -----------------LSSTGIRVVKTCIPQTLEVLDVSNNNLD-SFSLFLPRLQELYI 458

Query: 177 SGRIPQQLAELTFLAFF------NVSDNYLT 201
           S     +L  L   + F       +S N L 
Sbjct: 459 SRN---KLKTLPDASLFPVLLVMKISRNQLK 486

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 20/200 (10%), Positives = 56/200 (28%), Gaps = 6/200 (3%)

Query: 3   YLRNENTFLQRIPR-SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGI 61
            + N  T    I R      + L  L +    + +     L ++  ++ L L  +    +
Sbjct: 129 RIGNVET-FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187

Query: 62  IEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVS 121
           +E        S +R ++L D     +   +          +   A R        + ++ 
Sbjct: 188 LEIFAD--ILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244

Query: 122 SNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSGRIP 181
             +    + S        +          +  ++S       +     ++        + 
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESD-VVSELGKVETVTIRRLHIPQFYLFYDLS 303

Query: 182 QQLAELTFLAFFNVSDNYLT 201
              + L  +    V ++ + 
Sbjct: 304 TVYSLLEKVKRITVENSKVF 323

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 11 LQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCG 70
             IP  L   + ++ L L  N+I+      L     L VLIL+S+    I  E      
Sbjct: 17 FTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI--EGDAFYS 72

Query: 71 FSKLRIIDLSDNRFTGKLPSNSF 93
             L  +DLSDN  +  L S+ F
Sbjct: 73 LGSLEHLDLSDNHLS-SLSSSWF 94

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 4/88 (4%)

Query: 8   NTFLQRIPR-SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPR 66
              +  I    L  C+ L+ L L  ++I+        +L  L  L L  N    +     
Sbjct: 35  FNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL--SSS 92

Query: 67  TSCGFSKLRIIDLSDNRFTGKLPSNSFL 94
                S L+ ++L  N +   L   S  
Sbjct: 93  WFGPLSSLKYLNLMGNPYQ-TLGVTSLF 119

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 7/87 (8%)

Query: 5   RNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEE 64
           +N    +Q+    L+    L  L +  N      P       K+  L L S     +   
Sbjct: 370 QNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV--- 425

Query: 65  PRTSCGFSKLRIIDLSDNRFTGKLPSN 91
              +C    L ++D+S+N         
Sbjct: 426 --KTCIPQTLEVLDVSNNNLD-SFSLF 449

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.0 bits (119), Expect = 5e-07
 Identities = 30/177 (16%), Positives = 55/177 (31%), Gaps = 50/177 (28%)

Query: 32  NQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSN 91
           N IS T+  +     K     L        +   +  C  ++   + L+    +  LP N
Sbjct: 20  NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLK-ECLINQFSELQLNRLNLS-SLPDN 77

Query: 92  SFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILA 151
                          +  L+        ++ N L +                  +P + A
Sbjct: 78  LP-----------PQITVLE--------ITQNALIS------------------LPELPA 100

Query: 152 GI---ILSNNRFDGAIPASIANLKGLQFSG----RIPQQLAELTFLAFFNVSDNYLT 201
            +      +NR    +P   A+LK L         +P+  A L ++   N  +N LT
Sbjct: 101 SLEYLDACDNRLS-TLPELPASLKHLDVDNNQLTMLPELPALLEYI---NADNNQLT 153

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.5 bits (110), Expect = 7e-06
 Identities = 29/202 (14%), Positives = 57/202 (28%), Gaps = 61/202 (30%)

Query: 11  LQRIPRSLINC----SKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPR 66
           +        +      K    G   N+        L  + + + L L       +   P 
Sbjct: 22  ISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRL---NLSSLPD 76

Query: 67  TSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLG 126
                 ++ +++++ N     LP             +   L YL            N L 
Sbjct: 77  N--LPPQITVLEITQNALI-SLPEL---------PAS---LEYL--------DACDNRL- 112

Query: 127 TYDYSRTMNSKGRVMTYNKIPNILAGII---LSNNRFDGAIPASIANLKGLQFSG----R 179
                            + +P + A +    + NN+    +P   A L+ +         
Sbjct: 113 -----------------STLPELPASLKHLDVDNNQLT-MLPELPALLEYINADNNQLTM 154

Query: 180 IPQQLAELTFLAFFNVSDNYLT 201
           +P+    L  L   +V +N LT
Sbjct: 155 LPELPTSLEVL---SVRNNQLT 173

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.0 bits (101), Expect = 7e-05
 Identities = 35/227 (15%), Positives = 68/227 (29%), Gaps = 80/227 (35%)

Query: 11  LQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNV-----------------LIL 53
           L  +P +L    ++  L +  N +  + P    +L  L+                  L +
Sbjct: 71  LSSLPDNL--PPQITVLEITQNALI-SLPELPASLEYLDACDNRLSTLPELPASLKHLDV 127

Query: 54  RSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDV 113
            +N    + E P      + L  I+  +N+ T  LP               ++L  L   
Sbjct: 128 DNNQLTMLPELP------ALLEYINADNNQLT-MLPEL------------PTSLEVLS-- 166

Query: 114 LFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAG---IILSNNRFDGAIPASIAN 170
                 V +N L                    +P +      + +S N  + ++PA    
Sbjct: 167 ------VRNNQL------------------TFLPELPESLEALDVSTNLLE-SLPAVPVR 201

Query: 171 LKGLQFSG-----------RIPQQLAELTFLAFFNVSDNYLTGPIPQ 206
               + +             IP+ +  L       + DN L+  I +
Sbjct: 202 NHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRE 248

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.1 bits (117), Expect = 7e-07
 Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 5/113 (4%)

Query: 3   YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGII 62
           +L  +  F+  +    +  +KL+ L L  N+++        +   +  + LR+N    ++
Sbjct: 173 HLNLQYNFIYDVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN---KLV 227

Query: 63  EEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLF 115
              +       L   DL  N F      + F     ++ V    ++ L     
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 40/243 (16%), Positives = 83/243 (34%), Gaps = 50/243 (20%)

Query: 3   YLRNENTFLQRIPRSLI-NCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGI 61
             +  ++ L++   SL  +   ++ L L  N +S    + L    KL +L L SN    +
Sbjct: 14  IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN----V 69

Query: 62  IEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCW-----NAMKIVNTSALRYLQ----- 111
           + E       S LR +DL++N    +L     +       N +  V+ S  +  +     
Sbjct: 70  LYETLDLESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLA 128

Query: 112 ---------DVLFPYGQ-----VSSNVLGTYDYSRTMNSKGRV----MTYNKIPNILAGI 153
                           +     +  N + T +++    S   +    + YN I ++   +
Sbjct: 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV 188

Query: 154 I--------LSNNRFDGAIPASIANLKGLQF---SG----RIPQQLAELTFLAFFNVSDN 198
           +        LS+N+    +     +  G+ +          I + L     L  F++  N
Sbjct: 189 VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN 247

Query: 199 YLT 201
              
Sbjct: 248 GFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 28/201 (13%), Positives = 58/201 (28%), Gaps = 45/201 (22%)

Query: 20  NCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL 79
           N ++ +   +  + +     S   +   +  L L  N    I         F+KL +++L
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI--SAADLAPFTKLELLNL 65

Query: 80  SDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYS---RTMNS 136
           S N                  + + S LR L         +++N +          T++ 
Sbjct: 66  SSNVLYE-TLD----------LESLSTLRTL--------DLNNNYVQELLVGPSIETLH- 105

Query: 137 KGRVMTYNKIPNILAGI-------ILSNNRFDGAIPASIANLKGLQF---------SGRI 180
                  N I  +            L+NN+              +Q+         +   
Sbjct: 106 ----AANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 181 PQQLAELTFLAFFNVSDNYLT 201
            +  A    L   N+  N++ 
Sbjct: 162 AELAASSDTLEHLNLQYNFIY 182

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 28/206 (13%), Positives = 57/206 (27%), Gaps = 46/206 (22%)

Query: 11  LQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCG 70
           L + P      S L+ + +    +    P  +     L  L L  N    +   P +   
Sbjct: 93  LPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARN---PLRALPASIAS 148

Query: 71  FSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDY 130
            ++LR + +       +LP        + +      L+ L        ++    +     
Sbjct: 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL--------RLEWTGI----- 195

Query: 131 SRTMNSKGRVMTYNKIPNI------LAGIILSNNRFDGAIPASIANLKGLQ---FSG--- 178
                          +P        L  + + N+    A+  +I +L  L+     G   
Sbjct: 196 -------------RSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTA 241

Query: 179 --RIPQQLAELTFLAFFNVSD-NYLT 201
               P        L    + D + L 
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLL 267

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 11  LQRIPRSLINCSKLEFLGL-GINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSC 69
           L  +  ++ +  KLE L L G   +   +P   G    L  LIL+      ++  P    
Sbjct: 218 LSALGPAIHHLPKLEELDLRGCTALR-NYPPIFGGRAPLKRLILKDC--SNLLTLPLDIH 274

Query: 70  GFSKLRIIDLSDNRFTGKLPSN 91
             ++L  +DL       +LPS 
Sbjct: 275 RLTQLEKLDLRGCVNLSRLPSL 296

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 2   FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNI 57
             L++ +  L  +P  +   ++LE L L         PS +  LP   ++++  ++
Sbjct: 258 LILKDCS-NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 37/213 (17%), Positives = 70/213 (32%), Gaps = 32/213 (15%)

Query: 11  LQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCG 70
                  L N + L +L +  +++ D  P  +  L  L  L L  N    I         
Sbjct: 144 NLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP----LAS 197

Query: 71  FSKLRIIDLSDNRFT-----GKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVL 125
            + L       N+ T       +   + L     KI + S L  L  + +    + +N +
Sbjct: 198 LTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLE--IGTNQI 255

Query: 126 GTYDYSRTMNS-KGRVMTYNKIPNI--------LAGIILSNNRFDGAIPASIANLKGL-- 174
              +  + +   K   +  N+I +I        L  + L+NN+        I  L  L  
Sbjct: 256 SDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 175 ------QFSGRIPQQLAELTFLAFFNVSDNYLT 201
                   +   P  LA L+ +   + ++  + 
Sbjct: 316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 6/73 (8%)

Query: 18  LINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRII 77
           L N  KL  L +G N+I+D   S L  L  L  L L  +    I          +K+  +
Sbjct: 84  LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISP----LANLTKMYSL 137

Query: 78  DLSDNRFTGKLPS 90
           +L  N     L  
Sbjct: 138 NLGANHNLSDLSP 150

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 8   NTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRT 67
              +  I  ++ + +KL+ L +G NQISD   S L  L +LN L L +N       E   
Sbjct: 252 TNQISDIN-AVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIG 308

Query: 68  SCGFSKLRIIDLSDNRFTG 86
               + L  + LS N  T 
Sbjct: 309 GL--TNLTTLFLSQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 39.8 bits (94), Expect = 6e-04
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 6/70 (8%)

Query: 17  SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRI 76
            +   + LE+L L  NQI+D  P  L  L KL  L + +N     I +       + LR 
Sbjct: 61  GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN----KITDISALQNLTNLRE 114

Query: 77  IDLSDNRFTG 86
           + L+++  + 
Sbjct: 115 LYLNEDNISD 124

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 6/112 (5%)

Query: 8   NTFLQRIPRS--LINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEP 65
           ++ L+++      ++   L +L +        F      L  L VL +  N F      P
Sbjct: 110 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF-LP 168

Query: 66  RTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTS--ALRYLQDVLF 115
                   L  +DLS  +   +L   +F   ++++++N S      L    +
Sbjct: 169 DIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 4/87 (4%)

Query: 8   NTFLQRIPR-SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPR 66
           N+F +            L FL L   Q+    P+   +L  L VL +  N F+ +  +  
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL--DTF 217

Query: 67  TSCGFSKLRIIDLSDNRFTGKLPSNSF 93
                + L+++D S N           
Sbjct: 218 PYKCLNSLQVLDYSLNHIM-TSKKQEL 243

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 16/112 (14%), Positives = 35/112 (31%), Gaps = 13/112 (11%)

Query: 11  LQRIPRSLINCSKLEFLGLGINQISDTFP-SWLGTLPKLNVLILRSNIFYGIIEEPRTSC 69
           +  +  + +   +LE L    + +      S   +L  L  L +                
Sbjct: 90  VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA--FNGIFN 147

Query: 70  GFSKLRIIDLSDNRFTGKLPSNSF----------LCWNAMKIVNTSALRYLQ 111
           G S L ++ ++ N F      + F          L    ++ ++ +A   L 
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 199

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 3/81 (3%)

Query: 11 LQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCG 70
          L  +P  +   S    L L  N++          L +L  L L SN         ++  G
Sbjct: 19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG 76

Query: 71 FSKLRIIDLSDNRFTGKLPSN 91
           + L+ +DLS N     + SN
Sbjct: 77 TTSLKYLDLSFNGVI-TMSSN 96

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 11  LQRIPR-SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSC 69
           L  +P  ++ +   L FL L  N IS    S L  L +L  + L       +  EP    
Sbjct: 236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV--EPYAFR 293

Query: 70  GFSKLRIIDLSDNRFTGKLPSNSF 93
           G + LR++++S N+ T  L  + F
Sbjct: 294 GLNYLRVLNVSGNQLT-TLEESVF 316

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 26/110 (23%), Positives = 39/110 (35%), Gaps = 12/110 (10%)

Query: 3   YLRNENTFLQRIPR-SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGI 61
            L      ++ + +    +   LE L L  N +S   P     L  L  L LRSN    I
Sbjct: 36  LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI 95

Query: 62  IEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQ 111
                   G S L  +D+S+N+    L    F         +   L+ L+
Sbjct: 96  --PLGVFTGLSNLTKLDISENKIV-ILLDYMF--------QDLYNLKSLE 134

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.9 bits (109), Expect = 9e-06
 Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 11/106 (10%)

Query: 6   NENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEP 65
           +   +L  +  + +    L  L +    ++      +  L  L  L L  N    I  E 
Sbjct: 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI--EG 265

Query: 66  RTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQ 111
                  +L+ I L   +    +   +F           + LR L 
Sbjct: 266 SMLHELLRLQEIQLVGGQLA-VVEPYAF--------RGLNYLRVLN 302

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 24/100 (24%), Positives = 33/100 (33%), Gaps = 13/100 (13%)

Query: 11  LQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCG 70
              +P  +   ++   L LG N+I         + P L  L L  NI   +  EP     
Sbjct: 23  FVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV--EPGAFNN 78

Query: 71  FSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYL 110
              LR + L  NR    +P   F           S L  L
Sbjct: 79  LFNLRTLGLRSNRLK-LIPLGVF--------TGLSNLTKL 109

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 3/84 (3%)

Query: 11  LQRIP-RSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSC 69
           L  I  R+    + LE L L    ++      L  L  L VL LR      I     +  
Sbjct: 140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI--RDYSFK 197

Query: 70  GFSKLRIIDLSDNRFTGKLPSNSF 93
              +L+++++S   +   +  N  
Sbjct: 198 RLYRLKVLEISHWPYLDTMTPNCL 221

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 4/84 (4%)

Query: 11  LQRIPR-SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSC 69
           L+ IP       S L  L +  N+I          L  L  L +  N    I    R   
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI--SHRAFS 149

Query: 70  GFSKLRIIDLSDNRFTGKLPSNSF 93
           G + L  + L     T  +P+ + 
Sbjct: 150 GLNSLEQLTLEKCNLT-SIPTEAL 172

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 46.7 bits (110), Expect = 6e-06
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 3/75 (4%)

Query: 11  LQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCG 70
           L+ +P +L     LE L    N +       +  LP+L  L+L +N         +    
Sbjct: 475 LRALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQ-SAAIQPLVS 531

Query: 71  FSKLRIIDLSDNRFT 85
             +L +++L  N   
Sbjct: 532 CPRLVLLNLQGNSLC 546

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 35/199 (17%), Positives = 58/199 (29%), Gaps = 59/199 (29%)

Query: 11  LQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCG 70
           L  +P    +   L      +  +SD         P L  L + +N    + E       
Sbjct: 103 LTELPELPQSLKSLLVDNNNLKALSD-------LPPLLEYLGVSNNQLEKLPE----LQN 151

Query: 71  FSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDY 130
            S L+IID+ +N    KLP                +L ++           +N L     
Sbjct: 152 SSFLKIIDVDNNSLK-KLPD------------LPPSLEFI--------AAGNNQL----- 185

Query: 131 SRTMNSKGRVMTYNKIPNI-----LAGIILSNNRFDGAIPASIANLKGLQFSG---RIPQ 182
                         ++P +     L  I   NN     +P    +L+ +           
Sbjct: 186 -------------EELPELQNLPFLTAIYADNNSLK-KLPDLPLSLESIVAGNNILEELP 231

Query: 183 QLAELTFLAFFNVSDNYLT 201
           +L  L FL      +N L 
Sbjct: 232 ELQNLPFLTTIYADNNLLK 250

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 38/206 (18%), Positives = 57/206 (27%), Gaps = 59/206 (28%)

Query: 3   YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGII 62
           ++   N  L+ +P  L N   L  +    N +             L  ++  +N    I+
Sbjct: 177 FIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNN----IL 227

Query: 63  EEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSS 122
           EE         L  I   +N     LP                +L  L         V  
Sbjct: 228 EELPELQNLPFLTTIYADNNLLK-TLPDLP------------PSLEAL--------NVRD 266

Query: 123 NVLGTYDYSRTMNSKGRVMTYNKIPNILAG---IILSNNRFDGAIPASIANLKGLQFSG- 178
           N L                    +P +      + +S N F G +     NL  L  S  
Sbjct: 267 NYL------------------TDLPELPQSLTFLDVSENIFSG-LSELPPNLYYLNASSN 307

Query: 179 ---RIPQQLAELTFLAFFNVSDNYLT 201
               +      L  L   NVS+N L 
Sbjct: 308 EIRSLCDLPPSLEEL---NVSNNKLI 330

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 44/200 (22%), Positives = 68/200 (34%), Gaps = 65/200 (32%)

Query: 11  LQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCG 70
           L+ +P  L N   L  +    N +  T P    +L  LN   +R N    + E P     
Sbjct: 227 LEELP-ELQNLPFLTTIYADNNLLK-TLPDLPPSLEALN---VRDNYLTDLPELP----- 276

Query: 71  FSKLRIIDLSDNRFTG--KLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTY 128
              L  +D+S+N F+G  +LP N               L YL          SSN +   
Sbjct: 277 -QSLTFLDVSENIFSGLSELPPN---------------LYYLN--------ASSNEI--- 309

Query: 129 DYSRTMNSKGRVMTYNKIPNILAGI---ILSNNRFDGAIPASIANLKGLQFSG----RIP 181
                            + ++   +    +SNN+    +PA    L+ L  S      +P
Sbjct: 310 ---------------RSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLIASFNHLAEVP 353

Query: 182 QQLAELTFLAFFNVSDNYLT 201
           +    L  L   +V  N L 
Sbjct: 354 ELPQNLKQL---HVEYNPLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 28/194 (14%), Positives = 58/194 (29%), Gaps = 56/194 (28%)

Query: 11  LQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCG 70
           L  +P    + + L+      + +S+  P+       L  L   SN    + + P     
Sbjct: 269 LTDLPELPQSLTFLDVSENIFSGLSELPPN-------LYYLNASSNEIRSLCDLP----- 316

Query: 71  FSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDY 130
              L  +++S+N+   +LP+                L  L          S N L     
Sbjct: 317 -PSLEELNVSNNKLI-ELPA------------LPPRLERL--------IASFNHL----- 349

Query: 131 SRTMNSKGRVMTYNKIPNILAG---IILSNNRFDGAIPASIANLKGLQFSGRIPQQLAEL 187
                         ++P +      + +  N      P    +++ L+ +  + +     
Sbjct: 350 -------------AEVPELPQNLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELP 395

Query: 188 TFLAFFNVSDNYLT 201
             L   +V  N L 
Sbjct: 396 QNLKQLHVETNPLR 409

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 23/109 (21%), Positives = 36/109 (33%), Gaps = 11/109 (10%)

Query: 3   YLRNENTFLQRIP-RSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGI 61
            +      +  +P  S   C  L  L L  N ++    +    L  L  L L  N     
Sbjct: 36  RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95

Query: 62  IEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYL 110
           + +P T  G  +L  + L       +L    F           +AL+YL
Sbjct: 96  V-DPATFHGLGRLHTLHLDRCGLQ-ELGPGLF--------RGLAALQYL 134

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 3   YLRNENTFLQRIP-RSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGI 61
           YL  ++  LQ +P  +  +   L  L L  N+IS         L  L+ L+L  N    +
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 62  IEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSF 93
              P       +L  + L  N  +  LP+ + 
Sbjct: 193 --HPHAFRDLGRLMTLYLFANNLS-ALPTEAL 221

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 6   NENTFLQRIP-RSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEE 64
           ++N  L+ +   +     +L  L L    + +  P     L  L  L L+ N    +   
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL--P 145

Query: 65  PRTSCGFSKLRIIDLSDNRFTGKLPSNSF 93
             T      L  + L  NR +  +P  +F
Sbjct: 146 DDTFRDLGNLTHLFLHGNRIS-SVPERAF 173

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 12/100 (12%)

Query: 11  LQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCG 70
           LQ +P  +   +  + + L  N+IS    +       L +L L SN+   I  +     G
Sbjct: 23  LQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI--DAAAFTG 78

Query: 71  FSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYL 110
            + L  +DLSDN     +   +F             L  L
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATF--------HGLGRLHTL 110

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 46.3 bits (110), Expect = 7e-06
 Identities = 26/218 (11%), Positives = 60/218 (27%), Gaps = 11/218 (5%)

Query: 11  LQRIP-RSLINCSKLEFLGLGINQISDTF--PSWLGTLPKLNVLILRSNIFYGIIEEPRT 67
             ++   +    + LE L L    +       ++   L  L +L+LR N    I  +P +
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI--QPAS 148

Query: 68  S-CGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLG 126
                 +  ++DL+ N+    +     L +          L  +         +     G
Sbjct: 149 FFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLR-LSSITLQDMNEYWLGWEKCG 206

Query: 127 TYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSGRIPQQLAE 186
                +  +     ++ N     +A            I + I +      S        +
Sbjct: 207 NPF--KNTSITTLDLSGNGFKESMAKRFFDAIAGT-KIQSLILSNSYNMGSSFGHTNFKD 263

Query: 187 LTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGL 224
                F  +  + +        +      + F   + L
Sbjct: 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDL 301

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 46.3 bits (110), Expect = 7e-06
 Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 4/101 (3%)

Query: 3   YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGII 62
           YL      L+ IP +L    KL+ L L  N +S   P     L  L  L +  +    I 
Sbjct: 189 YLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI- 246

Query: 63  EEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVN 103
            E         L  I+L+ N  T  LP + F   + ++ ++
Sbjct: 247 -ERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIH 285

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 53/246 (21%), Positives = 72/246 (29%), Gaps = 43/246 (17%)

Query: 3   YLRNENTFLQRIP-RSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGI 61
            L      +Q I   S  +   LE L L  N I          L  LN L L  N    I
Sbjct: 68  LLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI 127

Query: 62  IEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQ-- 119
                     SKL+ + L +N     +PS +F            +LR L   L    +  
Sbjct: 128 --PNGAFVYLSKLKELWLRNNPIE-SIPSYAF--------NRIPSLRRL--DLGELKRLS 174

Query: 120 -VSSNVLGTYDYSRTMNSKGRVMTYNKIPNI--------LAGIILSNNRFDGAIPASIAN 170
            +S          R +N     +    +  I        L  + LS N      P S   
Sbjct: 175 YISEGAFEGLSNLRYLN-----LAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQG 229

Query: 171 LKGLQ----FSGRI----PQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNT---SFD 219
           L  LQ       +I          L  L   N++ N LT  +P    F    +       
Sbjct: 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL-LPHD-LFTPLHHLERIHLH 287

Query: 220 GNSGLC 225
            N   C
Sbjct: 288 HNPWNC 293

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 13/100 (13%)

Query: 11  LQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCG 70
           L+ +P  +   +    L L  NQI     +    L  L +L L  N    I  E     G
Sbjct: 55  LREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI--EIGAFNG 110

Query: 71  FSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYL 110
            + L  ++L DNR T  +P+ +F        V  S L+ L
Sbjct: 111 LANLNTLELFDNRLT-TIPNGAF--------VYLSKLKEL 141

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 45.3 bits (107), Expect = 9e-06
 Identities = 40/225 (17%), Positives = 63/225 (28%), Gaps = 43/225 (19%)

Query: 6   NENTFLQRIPRSLINCSKLEFLGLGINQIS-DTFPSWLGTL-----PKLNVLILRSNIFY 59
                    P  L+  +  +   L +  +S  T  +WL  L     P L VL +      
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162

Query: 60  GIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQ 119
                      F  L  +DLSDN   G+    S LC           L+ L         
Sbjct: 163 NFS--CEQVRVFPALSTLDLSDNPELGERGLISALCPLKF-----PTLQVL--------A 207

Query: 120 VSSNVLGTYDYSRTMNSKGRV------MTYNKIPNILAGII-----------LSNNRFDG 162
           + +  + T     +  +  RV      +++N + +                 LS      
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267

Query: 163 AIPASIANLKGLQFSG----RIPQQLAELTFLAFFNVSDNYLTGP 203
                 A L  L  S     R P    EL  +   ++  N     
Sbjct: 268 VPKGLPAKLSVLDLSYNRLDRNP-SPDELPQVGNLSLKGNPFLDS 311

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 29/101 (28%), Positives = 39/101 (38%), Gaps = 7/101 (6%)

Query: 11  LQRIPR-SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSC 69
           +Q I    L+  SKL  LGLG NQI       L  LP L  L L +N    +   P    
Sbjct: 205 IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN---KLSRVPAGLP 261

Query: 70  GFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYL 110
               L+++ L  N  T K+  N F        V  +    +
Sbjct: 262 DLKLLQVVYLHTNNIT-KVGVNDFC--PVGFGVKRAYYNGI 299

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 22/87 (25%), Positives = 30/87 (34%), Gaps = 7/87 (8%)

Query: 8   NTFLQRIPR-SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPR 66
           N  +  + +        L  L L  N+IS         L KL  L +  N    I   P 
Sbjct: 63  NNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI--PPN 120

Query: 67  TSCGFSKLRIIDLSDNRFTGKLPSNSF 93
                S L  + + DNR   K+P   F
Sbjct: 121 L---PSSLVELRIHDNRIR-KVPKGVF 143

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 4/101 (3%)

Query: 3   YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGII 62
           YL      ++ +P +L     LE L +  N   +  P     L  L  L + ++    I 
Sbjct: 200 YLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI- 257

Query: 63  EEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVN 103
            E     G + L  ++L+ N  +  LP + F     +  ++
Sbjct: 258 -ERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELH 296

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 37/231 (16%), Positives = 61/231 (26%), Gaps = 62/231 (26%)

Query: 15  PRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKL 74
             +    + L  L L  N ++         L KL  L LR+N    I            L
Sbjct: 116 VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI--PSYAFNRVPSL 173

Query: 75  RIIDLSD-NRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRT 133
             +DL +  +    +   +F             L+YL                       
Sbjct: 174 MRLDLGELKKLE-YISEGAF--------EGLFNLKYL----------------------- 201

Query: 134 MNSKGRVMTYNKIPNI--------LAGIILSNNRFDGAIPASIANLKGLQ----FSGRI- 180
                  +    I ++        L  + +S N F    P S   L  L+     + ++ 
Sbjct: 202 ------NLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255

Query: 181 ---PQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNT---SFDGNSGLC 225
                    L  L   N++ N L+  +P    F             N   C
Sbjct: 256 LIERNAFDGLASLVELNLAHNNLSS-LPHD-LFTPLRYLVELHLHHNPWNC 304

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 15/110 (13%)

Query: 3   YLRNENTFLQRIPR-SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGI 61
            L      L+ I   +      L++L LG+  I D  P+    L  L  L +  N F  I
Sbjct: 177 DLGELKK-LEYISEGAFEGLFNLKYLNLGMCNIKD-MPNLTP-LVGLEELEMSGNHFPEI 233

Query: 62  IEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQ 111
              P +  G S L+ + + +++ +  +  N+F           ++L  L 
Sbjct: 234 --RPGSFHGLSSLKKLWVMNSQVS-LIERNAF--------DGLASLVELN 272

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 13/100 (13%)

Query: 11  LQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCG 70
           L  +P+ +   S   +L L  N I          L  L VL L  N    I  E     G
Sbjct: 66  LSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI--EVGAFNG 121

Query: 71  FSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYL 110
            + L  ++L DN  T  +PS +F           S LR L
Sbjct: 122 LASLNTLELFDNWLT-VIPSGAF--------EYLSKLREL 152

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 3e-05
 Identities = 16/91 (17%), Positives = 25/91 (27%), Gaps = 4/91 (4%)

Query: 4   LRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSW-LGTLPKLNVLILRSNIFYGII 62
           LR            L     L  L +   Q         L  L +L  L +  +    + 
Sbjct: 13  LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV- 71

Query: 63  EEPRTSCGFSKLRIIDLSDNRFTGKLPSNSF 93
             P       +L  ++LS N     L   + 
Sbjct: 72  -APDAFHFTPRLSRLNLSFNALE-SLSWKTV 100

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 33/201 (16%), Positives = 64/201 (31%), Gaps = 40/201 (19%)

Query: 18  LINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRII 77
           L   +KL  L LG NQIS+  P  L  L  L  L L  N    I            L  +
Sbjct: 261 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP----ISNLKNLTYL 314

Query: 78  DLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSK 137
            L  N  +   P           + + + L+ L           +N +        + + 
Sbjct: 315 TLYFNNISDISP-----------VSSLTKLQRL--------FFYNNKVSDVSSLANLTNI 355

Query: 138 GRV-MTYNKIPNI--------LAGIILSNNRFDGAIPASIANLKGLQFSGRI------PQ 182
             +   +N+I ++        +  + L++  +  A     AN+        +      P 
Sbjct: 356 NWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPA 415

Query: 183 QLAELTFLAFFNVSDNYLTGP 203
            +++       +++ N  +  
Sbjct: 416 TISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 29/208 (13%), Positives = 61/208 (29%), Gaps = 40/208 (19%)

Query: 3   YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGII 62
            L      L+ I   + N   L +L L  N ISD  P  + +L KL  L   +N     +
Sbjct: 291 NLELNENQLEDIS-PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNK----V 343

Query: 63  EEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSS 122
            +  +    + +  +    N+ +   P           + N + +  L         ++ 
Sbjct: 344 SDVSSLANLTNINWLSAGHNQISDLTP-----------LANLTRITQL--------GLND 384

Query: 123 NVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSGRIPQ 182
                   +   N        N    ++A   +S+            +      +  +P 
Sbjct: 385 QAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDG----------GSYTEPDITWNLPS 434

Query: 183 QLAELTF----LAFFNVSDNYLTGPIPQ 206
              E+++               +G + Q
Sbjct: 435 YTNEVSYTFSQPVTIGKGTTTFSGTVTQ 462

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 54/248 (21%), Positives = 89/248 (35%), Gaps = 48/248 (19%)

Query: 17  SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGI--------------- 61
            L N + LE L +  N++SD   S L  L  L  LI  +N    I               
Sbjct: 172 PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 229

Query: 62  ---IEEPRTSCGFSKLRIIDLSDNRFT-----GKLPSNSFLCWNAMKIVNTSALRYLQDV 113
              +++  T    + L  +DL++N+ +       L   + L   A +I N S L  L  +
Sbjct: 230 GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL 289

Query: 114 LFPYGQVSSNVLGTYDYSRTMNSKGRV-MTYNKIPNI--------LAGIILSNNRFDGAI 164
                 ++ N L        + +   + + +N I +I        L  +   NN+     
Sbjct: 290 TNLE--LNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD-- 345

Query: 165 PASIANLKGL--------QFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNT 216
            +S+ANL  +        Q S   P  LA LT +    ++D   T      K   +  NT
Sbjct: 346 VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNT 403

Query: 217 SFDGNSGL 224
             +    L
Sbjct: 404 VKNVTGAL 411

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 44/220 (20%), Positives = 87/220 (39%), Gaps = 26/220 (11%)

Query: 3   YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGII 62
            L+ +   ++ I   +   + L  +    NQ++D  P  L  L KL  +++ +N    I 
Sbjct: 50  TLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT 106

Query: 63  EEPRTSCGFSKLRIIDLSDNRFT-----GKLPSNSFLCWNAMKIVNTSALRYLQDVLFPY 117
                    + L  + L +N+ T       L + + L  ++  I + SAL  L  +    
Sbjct: 107 P----LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 162

Query: 118 GQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNI--------LAGIILSNNRFDGAIP-ASI 168
               + V      +     +   ++ NK+ +I        L  +I +NN+     P   +
Sbjct: 163 --FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL 220

Query: 169 ANLKGLQFSG-RI--PQQLAELTFLAFFNVSDNYLTGPIP 205
            NL  L  +G ++     LA LT L   ++++N ++   P
Sbjct: 221 TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 260

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 37/217 (17%), Positives = 66/217 (30%), Gaps = 17/217 (7%)

Query: 6   NENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEP 65
            E    +    S      L    +       +  +      ++N+ +L  +    I    
Sbjct: 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC 348

Query: 66  RTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTS--ALRYLQDVLFPYGQVSSN 123
             S   S    ++ + N FT             ++ +      L+    V      +SS 
Sbjct: 349 PPSP--SSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS- 404

Query: 124 VLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASI-ANLKGLQFSG---- 178
            L T D S    +             +  + LS+N   G++   +   +K L        
Sbjct: 405 -LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM 463

Query: 179 RIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDN 215
            IP+ +  L  L   NV+ N L   +P G     FD 
Sbjct: 464 SIPKDVTHLQALQELNVASNQLKS-VPDG----VFDR 495

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 16/74 (21%), Positives = 27/74 (36%)

Query: 20  NCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL 79
             S    L    N ++DT     G L +L  LIL+ N    + +    +     L+ +D+
Sbjct: 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381

Query: 80  SDNRFTGKLPSNSF 93
           S N  +        
Sbjct: 382 SQNSVSYDEKKGDC 395

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 8/80 (10%)

Query: 11  LQRIPRSLINCSKLEFLGLGINQIS----DTF--PSWLGTLPKLNVLILRSN-IFYGIIE 63
           L ++P  L +   ++ + L  N IS    + F  P +       + + L SN + Y  I+
Sbjct: 252 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311

Query: 64  EPRTSCGFSKLRIIDLSDNR 83
            P T         + L + +
Sbjct: 312 -PSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 7/101 (6%)

Query: 11  LQRIP-RSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSC 69
           + ++   SL   + L  LGL  N IS      L   P L  L L +N    +++ P    
Sbjct: 204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN---KLVKVPGGLA 260

Query: 70  GFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYL 110
               ++++ L +N  +  + SN F           ++   +
Sbjct: 261 DHKYIQVVYLHNNNIS-AIGSNDFCPPGYNT--KKASYSGV 298

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 37/208 (17%), Positives = 68/208 (32%), Gaps = 60/208 (28%)

Query: 11  LQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCG 70
           L+ +P  +     L+ L +  N+I+    S    L ++ V+ L +N       E     G
Sbjct: 112 LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169

Query: 71  FSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDY 130
             KL  I ++D   T  +P                +L  L                    
Sbjct: 170 MKKLSYIRIADTNIT-TIPQGLP-----------PSLTELH------------------- 198

Query: 131 SRTMNSKGRVMTYNKIPNI----------LAGIILSNNR---FDGAIPASIANLKGLQFS 177
                     +  NKI  +          LA + LS N     D    A+  +L+ L  +
Sbjct: 199 ----------LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248

Query: 178 G----RIPQQLAELTFLAFFNVSDNYLT 201
                ++P  LA+  ++    + +N ++
Sbjct: 249 NNKLVKVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 7/87 (8%)

Query: 8   NTFLQRIPR-SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPR 66
           N  +  I      N   L  L L  N+IS   P     L KL  L L  N    + E+  
Sbjct: 61  NNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM- 119

Query: 67  TSCGFSKLRIIDLSDNRFTGKLPSNSF 93
                  L+ + + +N  T K+  + F
Sbjct: 120 ----PKTLQELRVHENEIT-KVRKSVF 141

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 11  LQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCG 70
           L+++P+ L        L L  N+I++        L  L+ LIL +N    I   P     
Sbjct: 43  LEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI--SPGAFAP 98

Query: 71  FSKLRIIDLSDNRFTGKLPSNSF 93
             KL  + LS N+   +LP    
Sbjct: 99  LVKLERLYLSKNQLK-ELPEKMP 120

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 4/83 (4%)

Query: 3   YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGII 62
            +            +L   + L  L +  +   D+  + + TLPK+N + L  N   G I
Sbjct: 94  RIMG-KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN---GAI 149

Query: 63  EEPRTSCGFSKLRIIDLSDNRFT 85
            +        +L+ +++  +   
Sbjct: 150 TDIMPLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 2/77 (2%)

Query: 18  LINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRII 77
           +   S LE L +    ++      L  L  L +L +  +     I          K+  I
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN--TLPKVNSI 141

Query: 78  DLSDNRFTGKLPSNSFL 94
           DLS N     +     L
Sbjct: 142 DLSYNGAITDIMPLKTL 158

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 11/99 (11%)

Query: 17  SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRI 76
           SL +  KL+ L L  N ISD   + L  LP+L  L L +N     I +       +KL  
Sbjct: 104 SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNN----KITDITVLSRLTKLDT 157

Query: 77  IDLSDNRFT-----GKLPSNSFLCWNAMKIVNTSALRYL 110
           + L DN+ +       L     L  +   I +  AL  L
Sbjct: 158 LSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGL 196

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 7/92 (7%)

Query: 7   ENTFLQRIP-RSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEP 65
                 +I  +     + LE L +  + +    P  L ++  ++ LIL       +    
Sbjct: 158 NMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL--LE 215

Query: 66  RTSCGFSKLRIIDLSDNRFTG----KLPSNSF 93
                 S +  ++L D         +L +   
Sbjct: 216 IFVDVTSSVECLELRDTDLDTFHFSELSTGET 247

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 9e-04
 Identities = 28/150 (18%), Positives = 49/150 (32%), Gaps = 45/150 (30%)

Query: 45  LPKLNV-------------LILRSN---IFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKL 88
             K NV             L LR     +  G++       G + + +      +   K+
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL-----GSGKTWVALDVCLSYKVQCKM 180

Query: 89  PSNSFLCWNAMKIVNT--SALRYLQDVLFPYGQVSSNVLGTYDYSRTM--------NSKG 138
               F  W  +K  N+  + L  LQ +L+   Q+  N     D+S  +            
Sbjct: 181 DFKIF--WLNLKNCNSPETVLEMLQKLLY---QIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 139 RVMTYNKIPNILAGIILSN-------NRFD 161
           R++      N L  ++L N       N F+
Sbjct: 236 RLLKSKPYENCL--LVLLNVQNAKAWNAFN 263

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	305
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.94
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.9
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.9
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.9
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.9
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.9
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.89
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.89
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.89
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.89
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.89
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.88
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.87
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.87
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.87
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.87
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.86
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.86
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.86
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.85
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.85
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.85
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.85
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.85
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.85
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.85
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.85
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.85
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.85
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.84
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.84
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.84
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.84
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.84
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.84
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.84
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.83
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.83
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.82
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.82
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.82
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.82
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.81
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.81
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.8
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.8
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.78
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.78
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.78
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.77
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.77
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.76
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.76
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.74
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.72
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.71
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.71
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.71
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.71
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.71
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.7
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.69
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.66
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.66
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.66
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.66
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.66
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.62
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.62
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.59
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.56
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.54
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.52
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.51
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.5
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.49
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.46
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.44
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.31
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.25
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.23
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.17
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.17
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.91
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.88
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.87
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.86
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.85
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.55
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.45
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.41
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.4
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.38
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.65
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.62
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.51
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.4
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.31
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.29
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.28
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.28
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.23
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.01
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.85
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.07
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	88.15

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=7e-33  Score=269.63  Aligned_cols=235  Identities=29%  Similarity=0.389  Sum_probs=162.0

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD   81 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~   81 (305)
                      +|++++|++++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+  +.+++|++|++++
T Consensus       446 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~  523 (768)
T 3rgz_A          446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI--GRLENLAILKLSN  523 (768)
T ss_dssp             EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCS
T ss_pred             EEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH--hcCCCCCEEECCC
Confidence            45666666666666666666666666666666666666666666667777777777666666666  6677777777777


Q ss_pred             CcccccCChhhhhCcccchhccCcccccccccccCCCC------------------------------------------
Q 045166           82 NRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQ------------------------------------------  119 (305)
Q Consensus        82 N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~------------------------------------------  119 (305)
                      |+++|.+|.. +..+++|+.|++++|.+.+..+.....                                          
T Consensus       524 N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  602 (768)
T 3rgz_A          524 NSFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE  602 (768)
T ss_dssp             SCCEEECCGG-GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred             CcccCcCCHH-HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccch
Confidence            7777677754 667777777777765443221110000                                          


Q ss_pred             ---------------------cCCCccc-cccccccccccCcc---cccccccccccEEEccCCccccccchhhcCCCCc
Q 045166          120 ---------------------VSSNVLG-TYDYSRTMNSKGRV---MTYNKIPNILAGIILSNNRFDGAIPASIANLKGL  174 (305)
Q Consensus       120 ---------------------~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L  174 (305)
                                           +|..+.. ..+..++++.+.+.   +.....++.|+.|||++|+++|.+|..+++++.|
T Consensus       603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L  682 (768)
T 3rgz_A          603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL  682 (768)
T ss_dssp             GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred             hhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCC
Confidence                                 0000000 01122333333333   2233447788899999999999999999888888


Q ss_pred             e--------eeecCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCCCCCCcCCCCCCCCCCCCC
Q 045166          175 Q--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGCDSGEAPT  240 (305)
Q Consensus       175 ~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp~lc~~~~~~~c~~~~~~~  240 (305)
                      +        ++|.+|..+.++++|++||+++|+++|.||+..+|.++....|.|||.+||.|+. .|.......
T Consensus       683 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~~~  755 (768)
T 3rgz_A          683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNADG  755 (768)
T ss_dssp             CEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC---
T ss_pred             CEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCccCC
Confidence            7        8899999999999999999999999999999999999999999999999999987 897665433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=5.8e-31  Score=230.08  Aligned_cols=227  Identities=26%  Similarity=0.338  Sum_probs=161.2

Q ss_pred             EEEcccCcccc--ccChhhhcCCCCCEEeccC-cccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEe
Q 045166            2 FYLRNENTFLQ--RIPRSLINCSKLEFLGLGI-NQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIID   78 (305)
Q Consensus         2 ~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~   78 (305)
                      .|+|++|.+++  .+|..|.++++|++|++++ |.+.+.+|..++.+++|++|++++|.+++.+|..+  .++++|++|+
T Consensus        54 ~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~  131 (313)
T 1ogq_A           54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL--SQIKTLVTLD  131 (313)
T ss_dssp             EEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG--GGCTTCCEEE
T ss_pred             EEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH--hCCCCCCEEe
Confidence            57777777777  7777777777788888774 77777777777777777777777777777777766  6777777777


Q ss_pred             CCCCcccccCChhhhhCcccchhccCcccccccccccCCCCcC------------------CCccccccccccccccCc-
Q 045166           79 LSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVS------------------SNVLGTYDYSRTMNSKGR-  139 (305)
Q Consensus        79 Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~-  139 (305)
                      +++|.+++.+|.. +..+++|++|++++|...+..+...+..+                  ..+....+..+++..+.+ 
T Consensus       132 Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~  210 (313)
T 1ogq_A          132 FSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE  210 (313)
T ss_dssp             CCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEE
T ss_pred             CCCCccCCcCChH-HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCccc
Confidence            7777777777754 77777777777777544322211111111                  111111122222332322 


Q ss_pred             --ccccccccccccEEEccCCccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCCCC
Q 045166          140 --VMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQ  209 (305)
Q Consensus       140 --~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~  209 (305)
                        ....+..+++|+.|+|++|++++.+|. +..+++|+        +++.+|..+..+++|++|++++|+++|.+|....
T Consensus       211 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~  289 (313)
T 1ogq_A          211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN  289 (313)
T ss_dssp             ECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTT
T ss_pred             CcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCcc
Confidence              223344577888888888888866655 66555555        7778999999999999999999999999999988


Q ss_pred             CCccCCCccCCCCCCCCcCCCCCC
Q 045166          210 FATFDNTSFDGNSGLCGKPLSKGC  233 (305)
Q Consensus       210 ~~~l~~~~~~gNp~lc~~~~~~~c  233 (305)
                      +.++...++.|||.+||.|.. .|
T Consensus       290 l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          290 LQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             GGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             ccccChHHhcCCCCccCCCCC-CC
Confidence            999999999999999998775 46

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.94  E-value=2.1e-27  Score=233.39  Aligned_cols=222  Identities=17%  Similarity=0.178  Sum_probs=146.1

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|+|++|.+.+..|..|..+++|+.|+|++|++++..|..|..+++|++|+|++|.+++..|..+  .++++|++|+++
T Consensus       269 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~  346 (844)
T 3j0a_A          269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF--YGLPKVAYIDLQ  346 (844)
T ss_dssp             CEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC--SSCTTCCEEECC
T ss_pred             cEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh--cCCCCCCEEECC
Confidence            468999999998888889999999999999999998778888999999999999999988778777  889999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCccccccccccc-----------CCCCcCCCc----------------------cc-
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLF-----------PYGQVSSNV----------------------LG-  126 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~-----------~~~~~~~~~----------------------~~-  126 (305)
                      +|++. .++...|..+++|+.|++++|........           ....+|...                      .. 
T Consensus       347 ~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l  425 (844)
T 3j0a_A          347 KNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRV  425 (844)
T ss_dssp             SCCCC-CCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTC
T ss_pred             CCCCC-ccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcC
Confidence            99998 55555688889999998887643221000           000011000                      00 


Q ss_pred             cccccccccccCcc---------------------------------cccccccccccEEEccCCccccccchhhcCCCC
Q 045166          127 TYDYSRTMNSKGRV---------------------------------MTYNKIPNILAGIILSNNRFDGAIPASIANLKG  173 (305)
Q Consensus       127 ~~~~~~~~~~~~~~---------------------------------~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~  173 (305)
                      ..+..+++..+.+.                                 ...+..+++|+.|||++|++++..|..+..+++
T Consensus       426 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  505 (844)
T 3j0a_A          426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA  505 (844)
T ss_dssp             TTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCS
T ss_pred             CccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhh
Confidence            01112222222221                                 111233455666666666666555555555555


Q ss_pred             ce--------eeecCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCCCCCCcCC
Q 045166          174 LQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPL  229 (305)
Q Consensus       174 L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp~lc~~~~  229 (305)
                      |+        +++..|..+.  ++|++|||++|++++.+|.  .+..+..++++|||+.|+|+.
T Consensus       506 L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~--~~~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          506 LRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD--VFVSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             CSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC--CCSSCCEEEEEEECCCCSSSC
T ss_pred             hheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChh--HhCCcCEEEecCCCccccccc
Confidence            44        2332333332  5666666666666666664  355777888999999997754

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.94  E-value=6.1e-27  Score=227.84  Aligned_cols=221  Identities=24%  Similarity=0.287  Sum_probs=155.9

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++||+++|++++.+|..++++++|++|++++|.+++.+|..++.+++|++|++++|++++.+|..+  ..+++|++|+++
T Consensus       421 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~L~  498 (768)
T 3rgz_A          421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL--SNCTNLNWISLS  498 (768)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECC
T ss_pred             CEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH--hcCCCCCEEEcc
Confidence            356777777777777777777777777777777777777777777777777777777777777766  677788888888


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCC-----------------CCcCCCccccccc-ccc---------
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPY-----------------GQVSSNVLGTYDY-SRT---------  133 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~-~~~---------  133 (305)
                      +|++++.+|.. ++.+++|+.|++++|...+..+...                 +.+|..+...... ...         
T Consensus       499 ~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~  577 (768)
T 3rgz_A          499 NNRLTGEIPKW-IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY  577 (768)
T ss_dssp             SSCCCSCCCGG-GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEE
T ss_pred             CCccCCcCChH-HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccc
Confidence            88888777755 7778888888887765443221111                 1223222111000 000         


Q ss_pred             ----------------------------------------ccccCcccccccccccccEEEccCCccccccchhhcCCCC
Q 045166          134 ----------------------------------------MNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKG  173 (305)
Q Consensus       134 ----------------------------------------~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~  173 (305)
                                                              ....+........+++|+.|||++|+++|.+|.++++++.
T Consensus       578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~  657 (768)
T 3rgz_A          578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY  657 (768)
T ss_dssp             EECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTT
T ss_pred             cccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcccc
Confidence                                                    0000111112334678999999999999999999999988


Q ss_pred             ce--------eeecCCccccCCCCCCEEeccCCcceecCCCC-CCCCccCCCccCCCCCC
Q 045166          174 LQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGL  224 (305)
Q Consensus       174 L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~l~~~~~~gNp~l  224 (305)
                      |+        ++|.+|..++++++|++|||++|+++|.+|.. ..+..+..+++++|+..
T Consensus       658 L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred             CCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence            87        88999999999999999999999999999975 45667788888888643

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=7.7e-26  Score=207.31  Aligned_cols=220  Identities=20%  Similarity=0.116  Sum_probs=176.1

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|+|++|++++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..+  ..+++|++|+++
T Consensus        78 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~  155 (452)
T 3zyi_A           78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAF--EYLSKLRELWLR  155 (452)
T ss_dssp             SEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTS--SSCTTCCEEECC
T ss_pred             cEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhh--cccCCCCEEECC
Confidence            579999999998889999999999999999999999777899999999999999999998666667  889999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccC-CCCcCCCccccccccccccccCccc-ccccccccccEEEccCC
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFP-YGQVSSNVLGTYDYSRTMNSKGRVM-TYNKIPNILAGIILSNN  158 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~LdLs~N  158 (305)
                      +|+++ .+|...|..+++|+.|++++|+.+...... ...++      .+..+++..+.+.. .....+++|+.|||++|
T Consensus       156 ~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N  228 (452)
T 3zyi_A          156 NNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF------NLKYLNLGMCNIKDMPNLTPLVGLEELEMSGN  228 (452)
T ss_dssp             SCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT------TCCEEECTTSCCSSCCCCTTCTTCCEEECTTS
T ss_pred             CCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCC------CCCEEECCCCcccccccccccccccEEECcCC
Confidence            99999 777777999999999999986554432210 11110      12223333333221 12344789999999999


Q ss_pred             ccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCC-CCCCccCCCccCCCCCCCCcCC
Q 045166          159 RFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKPL  229 (305)
Q Consensus       159 ~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~l~~~~~~gNp~lc~~~~  229 (305)
                      ++++..|..|.++++|+        +.+..|..|..+++|++|+|++|++++..+.. ..+..+..+++++||+.|+|..
T Consensus       229 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          229 HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred             cCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence            99988899999888887        56677888999999999999999999665543 4567788889999999998864

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=2.3e-26  Score=200.87  Aligned_cols=191  Identities=17%  Similarity=0.205  Sum_probs=139.1

Q ss_pred             CCCCEEeccCccccc--CcchhhcCCCCCCEEEccc-ccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCccc
Q 045166           22 SKLEFLGLGINQISD--TFPSWLGTLPKLNVLILRS-NIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNA   98 (305)
Q Consensus        22 ~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~   98 (305)
                      .+++.|++++|.+++  .+|..+..+++|++|++++ |.+.+.+|..+  +.+++|++|++++|++++.+|.. +..+++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~  126 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI--AKLTQLHYLYITHTNVSGAIPDF-LSQIKT  126 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG--GGCTTCSEEEEEEECCEEECCGG-GGGCTT
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH--hcCCCCCEEECcCCeeCCcCCHH-HhCCCC
Confidence            689999999999998  8999999999999999995 99999999888  89999999999999999899966 899999


Q ss_pred             chhccCcccccccccccCCCCcCCCcccc-ccccccccccCcccc---cccccc-cccEEEccCCccccccchhhcCCCC
Q 045166           99 MKIVNTSALRYLQDVLFPYGQVSSNVLGT-YDYSRTMNSKGRVMT---YNKIPN-ILAGIILSNNRFDGAIPASIANLKG  173 (305)
Q Consensus        99 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~-~L~~LdLs~N~l~g~~p~~~~~L~~  173 (305)
                      |++|++++|...+..       |..+... .+..+++..+.+...   ....+. .|+.|++++|++++.+|..+..+. 
T Consensus       127 L~~L~Ls~N~l~~~~-------p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-  198 (313)
T 1ogq_A          127 LVTLDFSYNALSGTL-------PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-  198 (313)
T ss_dssp             CCEEECCSSEEESCC-------CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-
T ss_pred             CCEEeCCCCccCCcC-------ChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-
Confidence            999999997654322       2111111 223333333433311   122243 777888888888777777777654 


Q ss_pred             ce--------eeecCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCCC
Q 045166          174 LQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSG  223 (305)
Q Consensus       174 L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp~  223 (305)
                      |+        +.+.+|..+..+++|++|++++|++++.+|....+.++..+++++|..
T Consensus       199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l  256 (313)
T 1ogq_A          199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI  256 (313)
T ss_dssp             CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCC
T ss_pred             ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcc
Confidence            43        555667777777777777777777776666655555666666666643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=1.3e-25  Score=205.09  Aligned_cols=220  Identities=20%  Similarity=0.129  Sum_probs=174.7

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|+++...+..+  ..+++|++|+++
T Consensus        67 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~  144 (440)
T 3zyj_A           67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAF--VYLSKLKELWLR  144 (440)
T ss_dssp             SEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTS--CSCSSCCEEECC
T ss_pred             cEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHh--hccccCceeeCC
Confidence            479999999998888999999999999999999999777889999999999999999997666667  889999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCccccccccccc-CCCCcCCCccccccccccccccCccc-ccccccccccEEEccCC
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLF-PYGQVSSNVLGTYDYSRTMNSKGRVM-TYNKIPNILAGIILSNN  158 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~LdLs~N  158 (305)
                      +|.++ .+|...|..+++|+.|++++|+.+..... ....++      .+..+++..+.+.. .....+++|+.|||++|
T Consensus       145 ~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N  217 (440)
T 3zyj_A          145 NNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS------NLRYLNLAMCNLREIPNLTPLIKLDELDLSGN  217 (440)
T ss_dssp             SCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS------SCCEEECTTSCCSSCCCCTTCSSCCEEECTTS
T ss_pred             CCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc------ccCeecCCCCcCccccccCCCcccCEEECCCC
Confidence            99999 67766799999999999998654443211 011111      12223333332221 12344789999999999


Q ss_pred             ccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCC-CCCCccCCCccCCCCCCCCcCC
Q 045166          159 RFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKPL  229 (305)
Q Consensus       159 ~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~l~~~~~~gNp~lc~~~~  229 (305)
                      ++++..|..|.++++|+        +.+..|..|..+++|++|+|++|++++..+.. ..+..+..+++++||+.|+|..
T Consensus       218 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l  297 (440)
T 3zyj_A          218 HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI  297 (440)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred             ccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence            99988899999888887        56677888999999999999999999665543 4567788889999999998843

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=2.5e-25  Score=191.65  Aligned_cols=198  Identities=16%  Similarity=0.138  Sum_probs=134.7

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEccccc-ceeeeCCCCCCCCCCCccEEeCC
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNI-FYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      +|++++|++++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|. ++...|..+  ..+++|++|+++
T Consensus        36 ~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~--~~l~~L~~L~l~  113 (285)
T 1ozn_A           36 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF--HGLGRLHTLHLD  113 (285)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT--TTCTTCCEEECT
T ss_pred             EEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHh--cCCcCCCEEECC
Confidence            56666666665555566666666666666666666556666666666666666665 554445555  566666666666


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF  160 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l  160 (305)
                      +|.+++ ++...+..+++|++|++++|....                           .....+..+++|+.|+|++|++
T Consensus       114 ~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~---------------------------~~~~~~~~l~~L~~L~l~~n~l  165 (285)
T 1ozn_A          114 RCGLQE-LGPGLFRGLAALQYLYLQDNALQA---------------------------LPDDTFRDLGNLTHLFLHGNRI  165 (285)
T ss_dssp             TSCCCC-CCTTTTTTCTTCCEEECCSSCCCC---------------------------CCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCcCCE-ECHhHhhCCcCCCEEECCCCcccc---------------------------cCHhHhccCCCccEEECCCCcc
Confidence            666663 332336666666666666543211                           1122233477899999999999


Q ss_pred             ccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCC-CCCCCccCCCccCCCCCCCCcCC
Q 045166          161 DGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQ-GKQFATFDNTSFDGNSGLCGKPL  229 (305)
Q Consensus       161 ~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~-~~~~~~l~~~~~~gNp~lc~~~~  229 (305)
                      ++..+..+..+++|+        +.+..|..+..+++|++|++++|++++..+. ...+..+..+++++||+.|+++.
T Consensus       166 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~  243 (285)
T 1ozn_A          166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (285)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             cccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence            865555677777766        5566788899999999999999999975554 35677888889999999998764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.92  E-value=3.6e-24  Score=196.11  Aligned_cols=82  Identities=18%  Similarity=0.136  Sum_probs=49.1

Q ss_pred             cccccEEEccCCccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCC-CCCCccCCCc
Q 045166          147 PNILAGIILSNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFATFDNTS  217 (305)
Q Consensus       147 ~~~L~~LdLs~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~l~~~~  217 (305)
                      +++|+.|+|++|++++..|..+.++++|+        +.+..|..+..+++|++|++++|++++..+.. ..+..+..++
T Consensus       322 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  401 (455)
T 3v47_A          322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIW  401 (455)
T ss_dssp             CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEE
Confidence            34444444444444444444444444443        44455666777777777777777777544433 3556677777


Q ss_pred             cCCCCCCCCcC
Q 045166          218 FDGNSGLCGKP  228 (305)
Q Consensus       218 ~~gNp~lc~~~  228 (305)
                      +++||..|++|
T Consensus       402 l~~N~l~~~~~  412 (455)
T 3v47_A          402 LHTNPWDCSCP  412 (455)
T ss_dssp             CCSSCBCCCTT
T ss_pred             ccCCCcccCCC
Confidence            88888888776

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=5.5e-25  Score=193.36  Aligned_cols=193  Identities=11%  Similarity=0.085  Sum_probs=126.8

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|+|++|+++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|+|++|.++ .+|..+  +.+++|++|+++
T Consensus        84 ~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l--~~l~~L~~L~L~  158 (328)
T 4fcg_A           84 VALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI--ASLNRLRELSIR  158 (328)
T ss_dssp             CEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG--GGCTTCCEEEEE
T ss_pred             eEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHH--hcCcCCCEEECC
Confidence            46899999998 78888889999999999999998 58988999999999999999998 678777  889999999999


Q ss_pred             CCcccccCChhh--------hhCcccchhccCcccccccccccCCCCcCCCcccc-ccccccccccCccc--cccccccc
Q 045166           81 DNRFTGKLPSNS--------FLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGT-YDYSRTMNSKGRVM--TYNKIPNI  149 (305)
Q Consensus        81 ~N~l~g~lp~~~--------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~  149 (305)
                      +|++.+.+|..+        +.++++|++|++++|...        .+|..+... .+..+++..+.+..  .....+++
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--------~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~  230 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--------SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK  230 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--------CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTT
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC--------cchHhhcCCCCCCEEEccCCCCCcCchhhccCCC
Confidence            988888888652        224889999998886432        122211111 11112222221111  01223455


Q ss_pred             ccEEEccCCccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCC
Q 045166          150 LAGIILSNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQ  206 (305)
Q Consensus       150 L~~LdLs~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~  206 (305)
                      |+.|+|++|++.+.+|..++.+++|+        +.+.+|..+.++++|++|++++|++.|.+|+
T Consensus       231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~  295 (328)
T 4fcg_A          231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS  295 (328)
T ss_dssp             CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred             CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence            55555555555555555555544444        3344555555555555555555555555554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.91  E-value=1.3e-24  Score=191.02  Aligned_cols=199  Identities=16%  Similarity=0.150  Sum_probs=147.4

Q ss_pred             cCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCcccc
Q 045166           20 NCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAM   99 (305)
Q Consensus        20 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L   99 (305)
                      ...+++.|++++|.++. +|..++.+++|++|+|++|.++ .+|..+  +.+++|++|++++|.++ .+|.. +..+++|
T Consensus        79 ~~~~l~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~~--~~l~~L~~L~Ls~n~l~-~lp~~-l~~l~~L  152 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTM--QQFAGLETLTLARNPLR-ALPAS-IASLNRL  152 (328)
T ss_dssp             TSTTCCEEEEESSCCSS-CCSCGGGGTTCSEEEEESSCCC-CCCSCG--GGGTTCSEEEEESCCCC-CCCGG-GGGCTTC
T ss_pred             cccceeEEEccCCCchh-cChhhhhCCCCCEEECCCCCcc-chhHHH--hccCCCCEEECCCCccc-cCcHH-HhcCcCC
Confidence            35899999999999995 8999999999999999999998 788888  89999999999999999 89976 8999999


Q ss_pred             hhccCcccccccccccCCCC--cCCCcc-ccccccccccccCcc--cccccccccccEEEccCCccccccchhhcCCCCc
Q 045166          100 KIVNTSALRYLQDVLFPYGQ--VSSNVL-GTYDYSRTMNSKGRV--MTYNKIPNILAGIILSNNRFDGAIPASIANLKGL  174 (305)
Q Consensus       100 ~~L~l~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L  174 (305)
                      ++|++++|+..+..+...+.  ++..+. -..+..+++..+.+.  +.....+++|+.|+|++|+++ .+|..+..+++|
T Consensus       153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L  231 (328)
T 4fcg_A          153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL  231 (328)
T ss_dssp             CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTC
T ss_pred             CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCC
Confidence            99999997665433211110  000000 012223333333322  122344778888888888888 577778777777


Q ss_pred             e--------eeecCCccccCCCCCCEEeccCCcceecCCCC-CCCCccCCCccCCCCCCC
Q 045166          175 Q--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLC  225 (305)
Q Consensus       175 ~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~l~~~~~~gNp~lc  225 (305)
                      +        +.+.+|..+..+++|++|++++|++.+.+|.. ..+..+..+++++|+..-
T Consensus       232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~  291 (328)
T 4fcg_A          232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS  291 (328)
T ss_dssp             CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred             CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence            6        55678888888888888888888888888864 355667777788877654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=1.5e-23  Score=179.25  Aligned_cols=195  Identities=15%  Similarity=0.108  Sum_probs=144.8

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      +++++++|+++ .+|..+.  ++|++|++++|++++..+..|..+++|++|++++|.++...+..+  .++++|++|+++
T Consensus        19 ~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~--~~l~~L~~L~l~   93 (270)
T 2o6q_A           19 NSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF--KELKNLETLWVT   93 (270)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTT--SSCTTCCEEECC
T ss_pred             CEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhh--cCCCCCCEEECC
Confidence            36888888888 5676554  678899999999888555678888999999999998886555555  678889999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF  160 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l  160 (305)
                      +|+++ .+|...+..+++|+.|++++|.....                           ....+..+++|+.|+|++|++
T Consensus        94 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------------~~~~~~~l~~L~~L~Ls~n~l  145 (270)
T 2o6q_A           94 DNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSL---------------------------PPRVFDSLTKLTYLSLGYNEL  145 (270)
T ss_dssp             SSCCC-CCCTTTTTTCSSCCEEECCSSCCCCC---------------------------CTTTTTTCTTCCEEECCSSCC
T ss_pred             CCcCC-cCCHhHcccccCCCEEECCCCccCee---------------------------CHHHhCcCcCCCEEECCCCcC
Confidence            99988 66666678888899888887543221                           111223367788888888888


Q ss_pred             ccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCC-CCCCccCCCccCCCCCCCCcC
Q 045166          161 DGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKP  228 (305)
Q Consensus       161 ~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~l~~~~~~gNp~lc~~~  228 (305)
                      ++..+..+..+++|+        +.+..+..|..+++|++|++++|++++..+.. ..+..+..+++++||+.|+|.
T Consensus       146 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          146 QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             CccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            854444566666665        33334456888999999999999999655542 456778888999999999875

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=7.7e-24  Score=181.46  Aligned_cols=199  Identities=16%  Similarity=0.095  Sum_probs=149.1

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|++++|++++..+..|.++++|++|++++|++++..+..+..+++|++|++++|.+++..+..+  .++++|++|+++
T Consensus        31 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~  108 (276)
T 2z62_A           31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKLVAV  108 (276)
T ss_dssp             CEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT--TTCTTCCEEECT
T ss_pred             cEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh--cCCccccEEECC
Confidence            478899999887777788889999999999999888666678888999999999999888776777  788899999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF  160 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l  160 (305)
                      +|.+. .++...+..+++|++|++++|......      +                    ......+++|+.|++++|++
T Consensus       109 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~------l--------------------~~~~~~l~~L~~L~Ls~N~l  161 (276)
T 2z62_A          109 ETNLA-SLENFPIGHLKTLKELNVAHNLIQSFK------L--------------------PEYFSNLTNLEHLDLSSNKI  161 (276)
T ss_dssp             TSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCC------C--------------------CGGGGGCTTCCEEECCSSCC
T ss_pred             CCCcc-ccCchhcccCCCCCEEECcCCccceec------C--------------------chhhccCCCCCEEECCCCCC
Confidence            99888 455444788888998888875432200      0                    11223378899999999999


Q ss_pred             ccccchhhcCCCCce-------eee----cCCccccCCCCCCEEeccCCcceecCCCC-CCCCccCCCccCCCCCCCCcC
Q 045166          161 DGAIPASIANLKGLQ-------FSG----RIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKP  228 (305)
Q Consensus       161 ~g~~p~~~~~L~~L~-------l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~l~~~~~~gNp~lc~~~  228 (305)
                      ++..+..+..+..|+       +++    .+|.......+|++|++++|++++..+.. ..+.++..+++++||+.|+|+
T Consensus       162 ~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             CcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            976666666544332       221    23333344558999999999999665543 457788889999999999875

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.90  E-value=7.4e-24  Score=195.31  Aligned_cols=225  Identities=18%  Similarity=0.124  Sum_probs=150.0

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|+|++|.+++..|.+|.++++|++|+|++|++++..+..|.++++|++|+|++|.+++..|..+  .++++|++|+++
T Consensus        59 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~l~  136 (477)
T 2id5_A           59 EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF--QDLYNLKSLEVG  136 (477)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEEEC
T ss_pred             CEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHc--cccccCCEEECC
Confidence            468888888887778888888888888888888887444457778888888888888877766666  677777777777


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccc------------------------cCCCCc----------------
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVL------------------------FPYGQV----------------  120 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~------------------------~~~~~~----------------  120 (305)
                      +|.+++..| ..|..+++|+.|++++|.......                        .....+                
T Consensus       137 ~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~  215 (477)
T 2id5_A          137 DNDLVYISH-RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT  215 (477)
T ss_dssp             CTTCCEECT-TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCE
T ss_pred             CCccceeCh-hhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccc
Confidence            777774333 336666666666666543221100                        000000                


Q ss_pred             -CCCccc-cccccccccccCc---ccccccccccccEEEccCCccccccchhhcCCCCce--------eeecCCccccCC
Q 045166          121 -SSNVLG-TYDYSRTMNSKGR---VMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAEL  187 (305)
Q Consensus       121 -~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l  187 (305)
                       +..... ..+..+++..+.+   +......+++|+.|||++|++++..+..+.++.+|+        +.+..|..|..+
T Consensus       216 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  295 (477)
T 2id5_A          216 MTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL  295 (477)
T ss_dssp             ECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTC
T ss_pred             cCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCc
Confidence             000000 0111122222222   112234477889999999999877677777777766        556678889999


Q ss_pred             CCCCEEeccCCcceecCCCC-CCCCccCCCccCCCCCCCCcC
Q 045166          188 TFLAFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKP  228 (305)
Q Consensus       188 ~~L~~L~Ls~N~l~g~ip~~-~~~~~l~~~~~~gNp~lc~~~  228 (305)
                      ++|++|++++|++++..+.. ..+..+..+++++||+.|+|+
T Consensus       296 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          296 NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             TTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred             ccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence            99999999999999655543 456778888999999999874

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.90  E-value=8.2e-24  Score=200.49  Aligned_cols=216  Identities=15%  Similarity=0.019  Sum_probs=137.5

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEeccCcccccC--cchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDT--FPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL   79 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L   79 (305)
                      +|++++|...+.+  .+..+++|++|++++|.+++.  +|..+..+++|++|++++|.+++ +|..+  ..+++|++|++
T Consensus       332 ~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~--~~l~~L~~L~l  406 (606)
T 3vq2_A          332 SLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANF--MGLEELQHLDF  406 (606)
T ss_dssp             EEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCC--TTCTTCCEEEC
T ss_pred             eeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhc--cCCCCCCeeEC
Confidence            5666666444333  455666666666666666653  25566666666666666666654 44455  56666666666


Q ss_pred             CCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcc----cccccccccccEEEc
Q 045166           80 SDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRV----MTYNKIPNILAGIIL  155 (305)
Q Consensus        80 s~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~L~~LdL  155 (305)
                      ++|++.+..|...+..+++|+.|++++|..........+..+      .+..+++..+.+.    ......+++|+.|||
T Consensus       407 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L  480 (606)
T 3vq2_A          407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT------SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL  480 (606)
T ss_dssp             TTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT------TCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred             CCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC------CCCEEECCCCcCCCcchHHhhccCCCCCEEEC
Confidence            666666444423356666666666666543321111111100      1122222222222    223445789999999


Q ss_pred             cCCccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCC-CCCC-ccCCCccCCCCCCC
Q 045166          156 SNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFA-TFDNTSFDGNSGLC  225 (305)
Q Consensus       156 s~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~-~l~~~~~~gNp~lc  225 (305)
                      ++|++++..|..+.++++|+        +++.+|..+..+++|++||+++|+++ .+|.. ..+. .+..++++|||+.|
T Consensus       481 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCC
T ss_pred             CCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCccc
Confidence            99999988888898888877        56677899999999999999999999 56654 3343 47788899999999


Q ss_pred             CcCC
Q 045166          226 GKPL  229 (305)
Q Consensus       226 ~~~~  229 (305)
                      +|+.
T Consensus       560 ~c~~  563 (606)
T 3vq2_A          560 ICEH  563 (606)
T ss_dssp             SSTT
T ss_pred             CCcc
Confidence            8865

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.90  E-value=1.6e-23  Score=182.17  Aligned_cols=218  Identities=16%  Similarity=0.069  Sum_probs=163.7

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCccccc--CcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEe
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISD--TFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIID   78 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~   78 (305)
                      ++|+|++|+++...+..|.++++|++|++++|.++.  ..|..+..+++|++|++++|.++. +|..+  ..+++|++|+
T Consensus        31 ~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~--~~l~~L~~L~  107 (306)
T 2z66_A           31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNF--LGLEQLEHLD  107 (306)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEE--ETCTTCCEEE
T ss_pred             CEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-Chhhc--CCCCCCCEEE
Confidence            479999999985555568999999999999999984  236778889999999999999985 56666  7899999999


Q ss_pred             CCCCcccccCCh-hhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcc----cccccccccccEE
Q 045166           79 LSDNRFTGKLPS-NSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRV----MTYNKIPNILAGI  153 (305)
Q Consensus        79 Ls~N~l~g~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~L~~L  153 (305)
                      +++|+++ .++. ..+..+++|+.|++++|.............+      .+..+.+..+.+.    ......+++|+.|
T Consensus       108 l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  180 (306)
T 2z66_A          108 FQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS------SLEVLKMAGNSFQENFLPDIFTELRNLTFL  180 (306)
T ss_dssp             CTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT------TCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             CCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCc------CCCEEECCCCccccccchhHHhhCcCCCEE
Confidence            9999998 4543 4588899999999998654332111111111      1223333333332    2334557899999


Q ss_pred             EccCCccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCC-CCC-CccCCCccCCCCC
Q 045166          154 ILSNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQF-ATFDNTSFDGNSG  223 (305)
Q Consensus       154 dLs~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~-~~l~~~~~~gNp~  223 (305)
                      |+++|++++..|..+.++++|+        +.+..+..+..+++|++|++++|++++..|.. ..+ ..+..++++||+.
T Consensus       181 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred             ECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence            9999999987788888877776        44455567889999999999999999988865 334 4788888999999


Q ss_pred             CCCcC
Q 045166          224 LCGKP  228 (305)
Q Consensus       224 lc~~~  228 (305)
                      .|+|+
T Consensus       261 ~~~c~  265 (306)
T 2z66_A          261 ACTCE  265 (306)
T ss_dssp             ECSGG
T ss_pred             ecccC
Confidence            99764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.90  E-value=2.2e-24  Score=191.30  Aligned_cols=217  Identities=16%  Similarity=0.176  Sum_probs=138.0

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|++++|++++..+..|.++++|++|++++|++++..|..|.++++|++|++++|++++..+..+  .++++|++|+++
T Consensus        55 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~  132 (353)
T 2z80_A           55 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWF--KPLSSLTFLNLL  132 (353)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHH--TTCTTCSEEECT
T ss_pred             cEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHh--CCCccCCEEECC
Confidence            467788888776555577778888888888888877666677778888888888887775433335  677788888888


Q ss_pred             CCcccccCCh-hhhhCcccchhccCcccccccccccCCCCcCCCcccc-ccccccccccCcc---cccccccccccEEEc
Q 045166           81 DNRFTGKLPS-NSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGT-YDYSRTMNSKGRV---MTYNKIPNILAGIIL  155 (305)
Q Consensus        81 ~N~l~g~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~L~~LdL  155 (305)
                      +|+++ .+|. ..+..+++|+.|++++|+.+....      +..+... .+..+++..+.+.   ......+++|+.|++
T Consensus       133 ~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  205 (353)
T 2z80_A          133 GNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQ------RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL  205 (353)
T ss_dssp             TCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEEC------TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred             CCCCc-ccCchhhhccCCCCcEEECCCCccccccC------HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecC
Confidence            88877 6665 447777788888777754332211      0001000 1222223322222   222233455666666


Q ss_pred             cCCccccccchhh-cCCCCce---ee--------------------------------e----cCCccccCCCCCCEEec
Q 045166          156 SNNRFDGAIPASI-ANLKGLQ---FS--------------------------------G----RIPQQLAELTFLAFFNV  195 (305)
Q Consensus       156 s~N~l~g~~p~~~-~~L~~L~---l~--------------------------------g----~ip~~l~~l~~L~~L~L  195 (305)
                      ++|+++ .+|..+ ..+++|+   ++                                +    .+|..+..+++|++|++
T Consensus       206 ~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~L  284 (353)
T 2z80_A          206 HMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEF  284 (353)
T ss_dssp             ECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred             CCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEEC
Confidence            666654 333322 2233332   11                                1    35667888999999999


Q ss_pred             cCCcceecCCCC--CCCCccCCCccCCCCCCCCcC
Q 045166          196 SDNYLTGPIPQG--KQFATFDNTSFDGNSGLCGKP  228 (305)
Q Consensus       196 s~N~l~g~ip~~--~~~~~l~~~~~~gNp~lc~~~  228 (305)
                      ++|+++ .+|..  ..+.++..+++++||..|.++
T Consensus       285 s~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          285 SRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            999999 56654  467888889999999999875

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.90  E-value=1.4e-23  Score=198.85  Aligned_cols=224  Identities=14%  Similarity=0.071  Sum_probs=142.4

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcch-hhcCCCCCCEEEcccccceeee--CCCCCCCCCCCccEE
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPS-WLGTLPKLNVLILRSNIFYGII--EEPRTSCGFSKLRII   77 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~--p~~~~~~~l~~L~~L   77 (305)
                      ++|++++|++++..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+++..  |..+  ..+++|++|
T Consensus       304 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~l~~L~~L  381 (606)
T 3t6q_A          304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL--RNLSHLQSL  381 (606)
T ss_dssp             CEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT--TTCTTCCEE
T ss_pred             CEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhc--ccCCCCCEE
Confidence            4677777777766677777777777777777777655544 3666777777777777776654  4445  666667777


Q ss_pred             eCCCCcccccCChhhhhCcccchhccCcccccccccccC-CCC-----------------cCCCcccc-ccccccccccC
Q 045166           78 DLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFP-YGQ-----------------VSSNVLGT-YDYSRTMNSKG  138 (305)
Q Consensus        78 ~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~-----------------~~~~~~~~-~~~~~~~~~~~  138 (305)
                      ++++|.+.+..| ..+..+++|+.|++++|......... ...                 .+..+... .+..+++..+.
T Consensus       382 ~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  460 (606)
T 3t6q_A          382 NLSYNEPLSLKT-EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH  460 (606)
T ss_dssp             ECCSCSCEEECT-TTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred             ECCCCcCCcCCH-HHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence            777776664444 33666666666666664332211000 000                 01111110 12223333333


Q ss_pred             ccc------ccccccccccEEEccCCccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecC
Q 045166          139 RVM------TYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPI  204 (305)
Q Consensus       139 ~~~------~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i  204 (305)
                      +..      .....+++|+.|++++|++++..|..+.++++|+        +++..|..+.++++| +|++++|++++.+
T Consensus       461 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~  539 (606)
T 3t6q_A          461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIIL  539 (606)
T ss_dssp             CGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCC
T ss_pred             CCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccC
Confidence            322      2234477888888888888877788888777776        566778888888888 8899999888776


Q ss_pred             CCC-CCCCccCCCccCCCCCCCCcC
Q 045166          205 PQG-KQFATFDNTSFDGNSGLCGKP  228 (305)
Q Consensus       205 p~~-~~~~~l~~~~~~gNp~lc~~~  228 (305)
                      |.. ..+..+..++++|||+.|+|+
T Consensus       540 ~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          540 PSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             GGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             HhhcccCCCCCEEeCCCCCccccCC
Confidence            653 345667788899999999875

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.90  E-value=2.4e-23  Score=197.67  Aligned_cols=106  Identities=17%  Similarity=0.115  Sum_probs=95.2

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|||++|+|++..|.+|.++++|++|+|++|+|++..|++|.++++|++|+|++|++++..+..|  .++++|++|+++
T Consensus        55 ~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f--~~L~~L~~L~Ls  132 (635)
T 4g8a_A           55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKLVAV  132 (635)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGG--TTCTTCCEEECT
T ss_pred             CEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHh--cCCCCCCEEECC
Confidence            579999999998778899999999999999999999667789999999999999999998666677  899999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCccccc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRY  109 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~  109 (305)
                      +|+++ .+|...|+++++|++|++++|..
T Consensus       133 ~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l  160 (635)
T 4g8a_A          133 ETNLA-SLENFPIGHLKTLKELNVAHNLI  160 (635)
T ss_dssp             TSCCC-CSTTCCCTTCTTCCEEECCSSCC
T ss_pred             CCcCC-CCChhhhhcCcccCeeccccCcc
Confidence            99999 67766689999999999998654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=9.4e-23  Score=176.07  Aligned_cols=191  Identities=19%  Similarity=0.155  Sum_probs=134.5

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      +++++++|+++ .+|..+.  ++++.|++++|.+++..|..+..+++|++|+|++|.+++..+  .  ..+++|++|+++
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~--~~l~~L~~L~Ls   85 (290)
T 1p9a_G           13 LEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--D--GTLPVLGTLDLS   85 (290)
T ss_dssp             CEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--C--SCCTTCCEEECC
T ss_pred             cEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--C--CCCCcCCEEECC
Confidence            35788888887 5665543  678888888888887667778888888888888888876433  2  567888888888


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF  160 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l  160 (305)
                      +|+++ .+|.. +..+++|+.|++++|.....                           ....+..+++|+.|+|++|++
T Consensus        86 ~N~l~-~l~~~-~~~l~~L~~L~l~~N~l~~l---------------------------~~~~~~~l~~L~~L~L~~N~l  136 (290)
T 1p9a_G           86 HNQLQ-SLPLL-GQTLPALTVLDVSFNRLTSL---------------------------PLGALRGLGELQELYLKGNEL  136 (290)
T ss_dssp             SSCCS-SCCCC-TTTCTTCCEEECCSSCCCCC---------------------------CSSTTTTCTTCCEEECTTSCC
T ss_pred             CCcCC-cCchh-hccCCCCCEEECCCCcCccc---------------------------CHHHHcCCCCCCEEECCCCCC
Confidence            88887 77754 77788888888877533211                           111122356677777777777


Q ss_pred             ccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCC-CCCCccCCCccCCCCCCCCcC
Q 045166          161 DGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKP  228 (305)
Q Consensus       161 ~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~l~~~~~~gNp~lc~~~  228 (305)
                      ++..+..+..+++|+        +++..+..+..+++|++|+|++|+++ .+|.. .....+..+.+.|||+.|+|.
T Consensus       137 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             CccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence            755444555555554        33333345678999999999999999 45543 455677888899999999874

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.89  E-value=9.1e-24  Score=181.85  Aligned_cols=196  Identities=18%  Similarity=0.169  Sum_probs=154.6

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcc-cccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQ-ISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L   79 (305)
                      ++|++++|.+++..|..|.++++|++|++++|. ++...|..+..+++|++|++++|.+++..|..+  ..+++|++|++
T Consensus        59 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l  136 (285)
T 1ozn_A           59 TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--RGLAALQYLYL  136 (285)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEEC
T ss_pred             CEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHh--hCCcCCCEEEC
Confidence            579999999998889999999999999999997 887668889999999999999999998778777  88999999999


Q ss_pred             CCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCc
Q 045166           80 SDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNR  159 (305)
Q Consensus        80 s~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~  159 (305)
                      ++|.++ .+|...+..+++|+.|++++|.....                           ....+..+++|+.|++++|+
T Consensus       137 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------------~~~~~~~l~~L~~L~l~~n~  188 (285)
T 1ozn_A          137 QDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSV---------------------------PERAFRGLHSLDRLLLHQNR  188 (285)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEE---------------------------CTTTTTTCTTCCEEECCSSC
T ss_pred             CCCccc-ccCHhHhccCCCccEEECCCCccccc---------------------------CHHHhcCccccCEEECCCCc
Confidence            999999 66666689999999999998643221                           11112236788999999999


Q ss_pred             cccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCCCCCC
Q 045166          160 FDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCG  226 (305)
Q Consensus       160 l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp~lc~  226 (305)
                      +++..|..+.++++|+        +.+..+..+..+++|++|++++|++++..+.......+.......+...|.
T Consensus       189 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~  263 (285)
T 1ozn_A          189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCS  263 (285)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEE
T ss_pred             ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccC
Confidence            9888788888777776        444444568999999999999999997665432222333334445555454

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.89  E-value=1.1e-22  Score=178.87  Aligned_cols=211  Identities=17%  Similarity=0.130  Sum_probs=138.6

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|++++|++++..|..|.++++|++|++++|++++..|..+..+++|++|++++|.++ .+|..+  .  ++|++|+++
T Consensus        57 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~--~--~~L~~L~l~  131 (332)
T 2ft3_A           57 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--P--SSLVELRIH  131 (332)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSC--C--TTCCEEECC
T ss_pred             eEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCccc--c--ccCCEEECC
Confidence            47999999999877889999999999999999999977889999999999999999998 466655  3  789999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF  160 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l  160 (305)
                      +|+++ .+|...+..+++|+.|++++|......     ..+..+....+..+.+..+.+..-.....++|+.|++++|++
T Consensus       132 ~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i  205 (332)
T 2ft3_A          132 DNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSG-----FEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKI  205 (332)
T ss_dssp             SSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGG-----SCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCC
T ss_pred             CCccC-ccCHhHhCCCccCCEEECCCCccccCC-----CCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcC
Confidence            99998 677677899999999999986543210     011111111122222222222221111234566666666666


Q ss_pred             ccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCC-CCCCccCCCccCCCCC
Q 045166          161 DGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSG  223 (305)
Q Consensus       161 ~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~l~~~~~~gNp~  223 (305)
                      ++..|..+.++++|+        +.+..|..+..+++|++|++++|+++ .+|.. ..+..+..+++++|+.
T Consensus       206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l  276 (332)
T 2ft3_A          206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI  276 (332)
T ss_dssp             CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCC
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCC
Confidence            655555555544444        33334445666666666666666666 44442 3344455555555543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.89  E-value=8.9e-24  Score=201.42  Aligned_cols=209  Identities=17%  Similarity=0.159  Sum_probs=151.0

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEeccCc-------------------------------------------------
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGLGIN-------------------------------------------------   32 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-------------------------------------------------   32 (305)
                      .|+|++|.+.|.+|++++++++|++|+|++|                                                 
T Consensus        85 ~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~  164 (636)
T 4eco_A           85 GLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKD  164 (636)
T ss_dssp             EEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred             EEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHH
Confidence            5899999999999999999999999999888                                                 


Q ss_pred             -----------------------------ccccCcchhhcCCCCCCEEEcccccceee-----------------eCCCC
Q 045166           33 -----------------------------QISDTFPSWLGTLPKLNVLILRSNIFYGI-----------------IEEPR   66 (305)
Q Consensus        33 -----------------------------~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-----------------~p~~~   66 (305)
                                                   ++++ +|..++++++|++|+|++|.+++.                 +|..+
T Consensus       165 l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l  243 (636)
T 4eco_A          165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL  243 (636)
T ss_dssp             HHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC
T ss_pred             HhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh
Confidence                                         4456 888899999999999999999985                 88888


Q ss_pred             CCC--CCCCccEEeCCCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccc-------ccccccccccc
Q 045166           67 TSC--GFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLG-------TYDYSRTMNSK  137 (305)
Q Consensus        67 ~~~--~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~  137 (305)
                        +  ++++|++|++++|++.|.+|.. ++++++|++|++++|..+...     .+|..+..       ..+..+.+..+
T Consensus       244 --~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~l~~~-----~lp~~~~~L~~~~~l~~L~~L~L~~n  315 (636)
T 4eco_A          244 --KWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGE-----QLKDDWQALADAPVGEKIQIIYIGYN  315 (636)
T ss_dssp             --CGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCTTSCHH-----HHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred             --hhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCCCCCccc-----cchHHHHhhhccccCCCCCEEECCCC
Confidence              6  8999999999999999999965 889999999999987622210     11221111       12223333333


Q ss_pred             Ccc--cc--cccccccccEEEccCCccccccchhhcCCCCce--------eeecCCccccCCCC-CCEEeccCCcceecC
Q 045166          138 GRV--MT--YNKIPNILAGIILSNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTF-LAFFNVSDNYLTGPI  204 (305)
Q Consensus       138 ~~~--~~--~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~-L~~L~Ls~N~l~g~i  204 (305)
                      .+.  +.  ....+++|+.|++++|+++|.+| .++++++|+        +. .+|..+..+++ |++|++++|+++ .+
T Consensus       316 ~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~l  392 (636)
T 4eco_A          316 NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YI  392 (636)
T ss_dssp             CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SC
T ss_pred             cCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-cc
Confidence            332  11  23346778888888888888888 776655555        33 67777888887 888888888887 66


Q ss_pred             CCCCC---CCccCCCccCCCC
Q 045166          205 PQGKQ---FATFDNTSFDGNS  222 (305)
Q Consensus       205 p~~~~---~~~l~~~~~~gNp  222 (305)
                      |....   +..+..+++++|.
T Consensus       393 p~~~~~~~l~~L~~L~Ls~N~  413 (636)
T 4eco_A          393 PNIFDAKSVSVMSAIDFSYNE  413 (636)
T ss_dssp             CSCCCTTCSSCEEEEECCSSC
T ss_pred             chhhhhcccCccCEEECcCCc
Confidence            65422   2245555666664

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.89  E-value=7.5e-23  Score=195.02  Aligned_cols=209  Identities=16%  Similarity=0.169  Sum_probs=133.4

Q ss_pred             EEEcccCccccccChhhhcCCC-CCEEeccCcccccCcchhhcCCC--CCCEEEcccccceeeeCCCCCCC-------CC
Q 045166            2 FYLRNENTFLQRIPRSLINCSK-LEFLGLGINQISDTFPSWLGTLP--KLNVLILRSNIFYGIIEEPRTSC-------GF   71 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~p~~~~~~-------~l   71 (305)
                      +|++++|+++ .+|..+.++++ |++|++++|.++ .+|..+..++  +|++|++++|.+++.+|..+  .       .+
T Consensus       357 ~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l--~~~~~~~~~~  432 (636)
T 4eco_A          357 SLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF--DPLDPTPFKG  432 (636)
T ss_dssp             EEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSS--CTTCSSCCCC
T ss_pred             EEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhh--cccccccccC
Confidence            4555555555 55555555555 666666666655 3555554433  56666666666655555544  3       45


Q ss_pred             CCccEEeCCCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCcccc---------ccccccccccCcc--
Q 045166           72 SKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGT---------YDYSRTMNSKGRV--  140 (305)
Q Consensus        72 ~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~--  140 (305)
                      ++|++|++++|+++ .+|...+..+++|+.|++++|...        .+|......         .+..+++..+.+.  
T Consensus       433 ~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~--------~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l  503 (636)
T 4eco_A          433 INVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT--------EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL  503 (636)
T ss_dssp             CCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS--------BCCSSSSEETTEECTTGGGCCEEECCSSCCCBC
T ss_pred             CCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC--------CcCHHHhccccccccccCCccEEECcCCcCCcc
Confidence            56677777777776 666665666677777777765432        122222111         2233334333332  


Q ss_pred             -cccc-cccccccEEEccCCccccccchhhcCCCCce---e-----------eecCCccccCCCCCCEEeccCCcceecC
Q 045166          141 -MTYN-KIPNILAGIILSNNRFDGAIPASIANLKGLQ---F-----------SGRIPQQLAELTFLAFFNVSDNYLTGPI  204 (305)
Q Consensus       141 -~~~~-~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~---l-----------~g~ip~~l~~l~~L~~L~Ls~N~l~g~i  204 (305)
                       ..+. ..+++|+.|||++|++++ +|..+.++++|+   +           .+.+|..+.++++|++|+|++|++ +.+
T Consensus       504 p~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~i  581 (636)
T 4eco_A          504 SDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKV  581 (636)
T ss_dssp             CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBC
T ss_pred             ChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Ccc
Confidence             2222 257889999999999996 888888777776   3           567888999999999999999999 688


Q ss_pred             CCCCCCCccCCCccCCCCCCCC
Q 045166          205 PQGKQFATFDNTSFDGNSGLCG  226 (305)
Q Consensus       205 p~~~~~~~l~~~~~~gNp~lc~  226 (305)
                      |.... ..+..+++++|+..|-
T Consensus       582 p~~~~-~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          582 NEKIT-PNISVLDIKDNPNISI  602 (636)
T ss_dssp             CSCCC-TTCCEEECCSCTTCEE
T ss_pred             CHhHh-CcCCEEECcCCCCccc
Confidence            87633 7788888999988773

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.89  E-value=3.7e-22  Score=175.36  Aligned_cols=211  Identities=20%  Similarity=0.174  Sum_probs=151.0

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|+|++|++++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.++. +|..+    .++|++|+++
T Consensus        55 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~----~~~L~~L~l~  129 (330)
T 1xku_A           55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKM----PKTLQELRVH  129 (330)
T ss_dssp             CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSC----CTTCCEEECC
T ss_pred             eEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhh----cccccEEECC
Confidence            479999999997777789999999999999999998778899999999999999999984 66655    2789999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCcccc-ccccccccccCcccccccccccccEEEccCCc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGT-YDYSRTMNSKGRVMTYNKIPNILAGIILSNNR  159 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~  159 (305)
                      +|.++ .++...+..+++|+.|++++|......     ..+..+... .+..+.+..+.+........++|+.|++++|+
T Consensus       130 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~  203 (330)
T 1xku_A          130 ENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSG-----IENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNK  203 (330)
T ss_dssp             SSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGG-----BCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSC
T ss_pred             CCccc-ccCHhHhcCCccccEEECCCCcCCccC-----cChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCc
Confidence            99999 666666899999999999886542210     011111111 12222333333322222224678888888888


Q ss_pred             cccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCC-CCCCccCCCccCCCCC
Q 045166          160 FDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSG  223 (305)
Q Consensus       160 l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~l~~~~~~gNp~  223 (305)
                      +++..|..+..+++|+        +.+..+..+..+++|++|++++|+++ .+|.. ..+..+..+++++|+.
T Consensus       204 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i  275 (330)
T 1xku_A          204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI  275 (330)
T ss_dssp             CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCC
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcC
Confidence            8877777777776666        44455567778888888888888887 55543 4556677777777754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.89  E-value=9e-24  Score=184.33  Aligned_cols=192  Identities=23%  Similarity=0.240  Sum_probs=104.0

Q ss_pred             EEEcccCccccccChhh--hcCCCCCEEeccCcccccCcchhhcCC-----CCCCEEEcccccceeeeCCCCCCCCCCCc
Q 045166            2 FYLRNENTFLQRIPRSL--INCSKLEFLGLGINQISDTFPSWLGTL-----PKLNVLILRSNIFYGIIEEPRTSCGFSKL   74 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~~~~l~~L   74 (305)
                      +|+|++|++++.+|..+  ..+++|++|++++|++++. |..++.+     ++|++|++++|++++..|..+  +.+++|
T Consensus        99 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~--~~l~~L  175 (312)
T 1wwl_A           99 ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV--RVFPAL  175 (312)
T ss_dssp             EEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC--CCCSSC
T ss_pred             EEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh--ccCCCC
Confidence            45555555555555544  5555555555555555553 5444444     555555555555555444444  555555


Q ss_pred             cEEeCCCCcccccC--Chh-hhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCccccccccccccc
Q 045166           75 RIIDLSDNRFTGKL--PSN-SFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILA  151 (305)
Q Consensus        75 ~~L~Ls~N~l~g~l--p~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  151 (305)
                      ++||+++|++.+.+  |.. ++..+++|++|++++|......                        .........+++|+
T Consensus       176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~------------------------~~~~~~~~~l~~L~  231 (312)
T 1wwl_A          176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS------------------------GVCSALAAARVQLQ  231 (312)
T ss_dssp             CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH------------------------HHHHHHHHTTCCCS
T ss_pred             CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH------------------------HHHHHHHhcCCCCC
Confidence            55555555554331  211 1245555555555553221000                        00011112356778


Q ss_pred             EEEccCCccccccc-hhhcCCCCce---eee----cCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCCC
Q 045166          152 GIILSNNRFDGAIP-ASIANLKGLQ---FSG----RIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSG  223 (305)
Q Consensus       152 ~LdLs~N~l~g~~p-~~~~~L~~L~---l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp~  223 (305)
                      .|||++|++++.+| ..+..+++|+   +++    .+|..+.  ++|++||+++|++++. |....+..+..+++++|+.
T Consensus       232 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPF  308 (312)
T ss_dssp             EEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTT
T ss_pred             EEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCC
Confidence            88888888876554 3333333333   221    5666555  6788888888888765 5556667777777788764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=7.7e-23  Score=172.89  Aligned_cols=170  Identities=15%  Similarity=0.106  Sum_probs=114.5

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      +++|++++.++ .+|..+.  ++++.|++++|.+++..|..+..+++|++|+|++|.+++..|..+  ..+++|++|+++
T Consensus        17 ~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~   91 (251)
T 3m19_A           17 KEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF--DDLTELGTLGLA   91 (251)
T ss_dssp             TEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECT
T ss_pred             eEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh--ccCCcCCEEECC
Confidence            35788888887 6666554  688889999998888777778888889999999988888776667  788889999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF  160 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l  160 (305)
                      +|+++ .+|...+..+++|++|++++|....                           +....+..+++|+.|+|++|++
T Consensus        92 ~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~---------------------------~~~~~~~~l~~L~~L~Ls~N~l  143 (251)
T 3m19_A           92 NNQLA-SLPLGVFDHLTQLDKLYLGGNQLKS---------------------------LPSGVFDRLTKLKELRLNTNQL  143 (251)
T ss_dssp             TSCCC-CCCTTTTTTCTTCCEEECCSSCCCC---------------------------CCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCccc-ccChhHhcccCCCCEEEcCCCcCCC---------------------------cChhHhccCCcccEEECcCCcC
Confidence            98888 5665667888888888888753321                           1111222367788888888888


Q ss_pred             ccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceec
Q 045166          161 DGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGP  203 (305)
Q Consensus       161 ~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~  203 (305)
                      ++..|..+..+++|+        +.+..+..+..+++|++|++++|++++.
T Consensus       144 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            844333443333332        2222223444455555555555555443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.88  E-value=2e-22  Score=193.50  Aligned_cols=219  Identities=16%  Similarity=0.103  Sum_probs=158.9

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcc-hhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFP-SWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L   79 (305)
                      ++|++++|++++..|.+|..+++|++|++++|.+++.+| ..+.++++|++|++++|++++..+..+  ..+++|+.|++
T Consensus       384 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~~~~L~~L~l  461 (680)
T 1ziw_A          384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF--ALVPSLQRLML  461 (680)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTT--TTCTTCCEEEC
T ss_pred             ceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhh--hcCcccccchh
Confidence            367888889988888899999999999999999987666 578889999999999999888777777  67788888888


Q ss_pred             CCCccc--ccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCccc-----------ccccc
Q 045166           80 SDNRFT--GKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVM-----------TYNKI  146 (305)
Q Consensus        80 s~N~l~--g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~  146 (305)
                      ++|.+.  +.+|.. +..+++|+.|++++|............++      .+..+++..+.+..           .....
T Consensus       462 ~~n~l~~~~~~p~~-~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~------~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~  534 (680)
T 1ziw_A          462 RRVALKNVDSSPSP-FQPLRNLTILDLSNNNIANINDDMLEGLE------KLEILDLQHNNLARLWKHANPGGPIYFLKG  534 (680)
T ss_dssp             TTSCCBCTTCSSCT-TTTCTTCCEEECCSSCCCCCCTTTTTTCT------TCCEEECCSSCCGGGGSTTSTTSCCCTTTT
T ss_pred             ccccccccccCCcc-cccCCCCCEEECCCCCCCcCChhhhcccc------ccCEEeCCCCCccccchhhccCCcchhhcC
Confidence            888775  456644 77788888888877543321110011000      12222333332221           12455


Q ss_pred             cccccEEEccCCccccccch-hhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCCC--CCCccCC
Q 045166          147 PNILAGIILSNNRFDGAIPA-SIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGK--QFATFDN  215 (305)
Q Consensus       147 ~~~L~~LdLs~N~l~g~~p~-~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~--~~~~l~~  215 (305)
                      +++|+.|||++|+++ .+|. .|.++++|+        +++..+..|..+++|++|++++|++++..|...  .+..+..
T Consensus       535 l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~  613 (680)
T 1ziw_A          535 LSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE  613 (680)
T ss_dssp             CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSE
T ss_pred             CCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCE
Confidence            789999999999999 5665 577777776        444445567899999999999999998766532  4677888


Q ss_pred             CccCCCCCCCCcCC
Q 045166          216 TSFDGNSGLCGKPL  229 (305)
Q Consensus       216 ~~~~gNp~lc~~~~  229 (305)
                      ++++|||+.|+|+.
T Consensus       614 l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          614 LDMRFNPFDCTCES  627 (680)
T ss_dssp             EECTTCCCCBCCCC
T ss_pred             EEccCCCcccCCcc
Confidence            89999999999874

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=7.7e-22  Score=186.79  Aligned_cols=106  Identities=18%  Similarity=0.187  Sum_probs=80.3

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..+..+  +.+++|++|+++
T Consensus        78 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~l~~L~~L~Ls  155 (597)
T 3oja_B           78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF--HNTPKLTTLSMS  155 (597)
T ss_dssp             SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred             cEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHh--ccCCCCCEEEee
Confidence            467888888887777788888888888888888887666677888888888888888876544445  678888888888


Q ss_pred             CCcccccCChhhhhCcccchhccCccccc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRY  109 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~  109 (305)
                      +|.+++..| ..+..+++|+.|++++|..
T Consensus       156 ~N~l~~~~~-~~~~~l~~L~~L~L~~N~l  183 (597)
T 3oja_B          156 NNNLERIED-DTFQATTSLQNLQLSSNRL  183 (597)
T ss_dssp             SSCCCBCCT-TTTTTCTTCCEEECTTSCC
T ss_pred             CCcCCCCCh-hhhhcCCcCcEEECcCCCC
Confidence            888885444 4477888888888877543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=1.1e-22  Score=177.29  Aligned_cols=195  Identities=20%  Similarity=0.137  Sum_probs=143.6

Q ss_pred             CEEEcccCccccccChhh--hcCCCCCEEeccCcccccCcc----hhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCc
Q 045166            1 MFYLRNENTFLQRIPRSL--INCSKLEFLGLGINQISDTFP----SWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKL   74 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p----~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L   74 (305)
                      ++|++++|++++..|..+  ..+++|++|++++|.+++..|    ..+..+++|++|++++|.+++..|..+  ..+++|
T Consensus        94 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L  171 (310)
T 4glp_A           94 KELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV--RAFPAL  171 (310)
T ss_dssp             CEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC--CCCTTC
T ss_pred             eEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh--ccCCCC
Confidence            578999999999999888  889999999999999987655    345578999999999999988777777  889999


Q ss_pred             cEEeCCCCccccc--CC-hhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCccccccccccccc
Q 045166           75 RIIDLSDNRFTGK--LP-SNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILA  151 (305)
Q Consensus        75 ~~L~Ls~N~l~g~--lp-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  151 (305)
                      ++||+++|++.+.  ++ ..++..+++|++|++++|.......                        ........+++|+
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~------------------------~~~~l~~~l~~L~  227 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG------------------------VCAALAAAGVQPH  227 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH------------------------HHHHHHHHTCCCS
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH------------------------HHHHHHhcCCCCC
Confidence            9999999998642  22 2334688899999998864321000                        0001122367899


Q ss_pred             EEEccCCccccccchhhcCC---CCce---eee----cCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCC
Q 045166          152 GIILSNNRFDGAIPASIANL---KGLQ---FSG----RIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGN  221 (305)
Q Consensus       152 ~LdLs~N~l~g~~p~~~~~L---~~L~---l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gN  221 (305)
                      +|||++|++++.+|..+..+   ++|+   +++    .+|..+.  ++|++|||++|++++. |....+..+..+++++|
T Consensus       228 ~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          228 SLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGN  304 (310)
T ss_dssp             SEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSST
T ss_pred             EEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCC
Confidence            99999999997777766554   2443   222    5666654  7899999999999863 43456677888888888


Q ss_pred             CCC
Q 045166          222 SGL  224 (305)
Q Consensus       222 p~l  224 (305)
                      +..
T Consensus       305 ~l~  307 (310)
T 4glp_A          305 PFL  307 (310)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            753

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.88  E-value=1e-21  Score=179.81  Aligned_cols=105  Identities=17%  Similarity=0.189  Sum_probs=59.4

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCc-chhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTF-PSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L   79 (305)
                      ++|||++|++++..|..|.++++|++|++++|.+.+.+ |..|.++++|++|+|++|.+++..|..+  +++++|++|++
T Consensus        33 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L  110 (455)
T 3v47_A           33 NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF--NGLANLEVLTL  110 (455)
T ss_dssp             CEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT--TTCTTCCEEEC
T ss_pred             CEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhc--cCcccCCEEeC
Confidence            35667777766666666666666666666666665433 3455666666666666666665555555  55555555555


Q ss_pred             CCCcccccCCh-hhhhCcccchhccCccc
Q 045166           80 SDNRFTGKLPS-NSFLCWNAMKIVNTSAL  107 (305)
Q Consensus        80 s~N~l~g~lp~-~~~~~l~~L~~L~l~~~  107 (305)
                      ++|++++.+|. ..+..+++|++|++++|
T Consensus       111 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n  139 (455)
T 3v47_A          111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDN  139 (455)
T ss_dssp             TTSCCBTHHHHSSTTTTCTTCCEEECCSS
T ss_pred             CCCCCCccccCcccccCcccCCEEECCCC
Confidence            55555532221 12444445555544443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=2e-21  Score=166.18  Aligned_cols=178  Identities=18%  Similarity=0.194  Sum_probs=125.0

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      +.|++++|.++ .++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++..+..+  ..+++|++|+++
T Consensus        44 ~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~  117 (272)
T 3rfs_A           44 DQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-IS-ALKELTNLTYLILTGNQLQSLPNGVF--DKLTNLKELVLV  117 (272)
T ss_dssp             CEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECT
T ss_pred             eeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCccChhHh--cCCcCCCEEECC
Confidence            46888888887 343 57888999999999999887 43 68888999999999999887666666  788899999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF  160 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l  160 (305)
                      +|+++ .+|...+..+++|++|++++|....                           ........+++|+.|++++|++
T Consensus       118 ~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~---------------------------~~~~~~~~l~~L~~L~l~~n~l  169 (272)
T 3rfs_A          118 ENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQS---------------------------LPKGVFDKLTNLTELDLSYNQL  169 (272)
T ss_dssp             TSCCC-CCCTTTTTTCTTCCEEECCSSCCCC---------------------------CCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCcCC-ccCHHHhccCCCCCEEECCCCccCc---------------------------cCHHHhccCccCCEEECCCCCc
Confidence            99998 5555657888889998888753321                           1111223367888888888888


Q ss_pred             ccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCcceecCCCC-CCCCccCCCccCCCCCCCCcC
Q 045166          161 DGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKP  228 (305)
Q Consensus       161 ~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~l~~~~~~gNp~lc~~~  228 (305)
                      ++..|..                +..+++|++|++++|++++..|.. ..+..+..+++++|++.|.++
T Consensus       170 ~~~~~~~----------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          170 QSLPEGV----------------FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             CCCCTTT----------------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CccCHHH----------------hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence            8444333                455566666666666666555432 345555666666666666543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.87  E-value=1.7e-21  Score=174.94  Aligned_cols=105  Identities=18%  Similarity=0.227  Sum_probs=63.9

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|+|++|.+++..|..|..+++|++|++++|.+++..|..++.+++|++|++++|.++...+..+  ..+++|++|+++
T Consensus        72 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~l~~L~~L~L~  149 (390)
T 3o6n_A           72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF--HNTPKLTTLSMS  149 (390)
T ss_dssp             SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred             cEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHh--cCCCCCcEEECC
Confidence            356666666665555566666666666666666666555556666666666666666664333334  556666666666


Q ss_pred             CCcccccCChhhhhCcccchhccCcccc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALR  108 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~  108 (305)
                      +|.++ .++...+..+++|+.|++++|.
T Consensus       150 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~  176 (390)
T 3o6n_A          150 NNNLE-RIEDDTFQATTSLQNLQLSSNR  176 (390)
T ss_dssp             SSCCC-BCCTTTTSSCTTCCEEECCSSC
T ss_pred             CCccC-ccChhhccCCCCCCEEECCCCc
Confidence            66666 3333346666666666666643

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=1.7e-21  Score=166.48  Aligned_cols=175  Identities=14%  Similarity=0.100  Sum_probs=139.3

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|+|++|++++..+..|.++++|++|++++|.++...+..|..+++|++|++++|.+++..+..+  ..+++|++|+++
T Consensus        40 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~  117 (270)
T 2o6q_A           40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVF--DQLVNLAELRLD  117 (270)
T ss_dssp             SEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTT--TTCSSCCEEECC
T ss_pred             CEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHc--ccccCCCEEECC
Confidence            479999999997777799999999999999999998555567899999999999999998666666  789999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF  160 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l  160 (305)
                      +|+++ .+|...+..+++|+.|++++|.....                           ....+..+++|+.|+|++|++
T Consensus       118 ~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~---------------------------~~~~~~~l~~L~~L~L~~n~l  169 (270)
T 2o6q_A          118 RNQLK-SLPPRVFDSLTKLTYLSLGYNELQSL---------------------------PKGVFDKLTSLKELRLYNNQL  169 (270)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSSCCCCC---------------------------CTTTTTTCTTCCEEECCSSCC
T ss_pred             CCccC-eeCHHHhCcCcCCCEEECCCCcCCcc---------------------------CHhHccCCcccceeEecCCcC
Confidence            99999 56656689999999999998643221                           111223367788888888888


Q ss_pred             ccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCC
Q 045166          161 DGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIP  205 (305)
Q Consensus       161 ~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip  205 (305)
                      ++..+..+.++++|+        +.+..+..+..+++|+.|++++|++.+..+
T Consensus       170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             cEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            865555666666665        333344568889999999999999987654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.87  E-value=1.5e-21  Score=171.41  Aligned_cols=210  Identities=17%  Similarity=0.177  Sum_probs=160.7

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|+|++|++++..|..|.++++|++|++++|+++. +|..+.  ++|++|++++|.+++..+..+  .++++|++|+++
T Consensus        79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~  153 (330)
T 1xku_A           79 HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVF--NGLNQMIVVELG  153 (330)
T ss_dssp             CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHH--TTCTTCCEEECC
T ss_pred             CEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHh--cCCccccEEECC
Confidence            579999999998889999999999999999999986 776654  799999999999998666667  789999999999


Q ss_pred             CCcccc--cCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcc---cccccccccccEEEc
Q 045166           81 DNRFTG--KLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRV---MTYNKIPNILAGIIL  155 (305)
Q Consensus        81 ~N~l~g--~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~LdL  155 (305)
                      +|.+..  ..+ ..+..+++|+.|++++|....        +|.... ..+..+++..+.+.   ......+++|+.|+|
T Consensus       154 ~n~l~~~~~~~-~~~~~l~~L~~L~l~~n~l~~--------l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  223 (330)
T 1xku_A          154 TNPLKSSGIEN-GAFQGMKKLSYIRIADTNITT--------IPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGL  223 (330)
T ss_dssp             SSCCCGGGBCT-TGGGGCTTCCEEECCSSCCCS--------CCSSCC-TTCSEEECTTSCCCEECTGGGTTCTTCCEEEC
T ss_pred             CCcCCccCcCh-hhccCCCCcCEEECCCCcccc--------CCcccc-ccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            999962  444 448999999999999865432        222111 12233333333332   334455889999999


Q ss_pred             cCCccccccchhhcCCCCce---eee----cCCccccCCCCCCEEeccCCcceecCCCCC-------CCCccCCCccCCC
Q 045166          156 SNNRFDGAIPASIANLKGLQ---FSG----RIPQQLAELTFLAFFNVSDNYLTGPIPQGK-------QFATFDNTSFDGN  221 (305)
Q Consensus       156 s~N~l~g~~p~~~~~L~~L~---l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~-------~~~~l~~~~~~gN  221 (305)
                      ++|++++..+..+..+++|+   +++    .+|..+..+++|++|++++|++++..+...       ....+..+++.||
T Consensus       224 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N  303 (330)
T 1xku_A          224 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN  303 (330)
T ss_dssp             CSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred             CCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecC
Confidence            99999987777888777776   332    688899999999999999999996554432       2345666778899


Q ss_pred             CCCC
Q 045166          222 SGLC  225 (305)
Q Consensus       222 p~lc  225 (305)
                      |..+
T Consensus       304 ~~~~  307 (330)
T 1xku_A          304 PVQY  307 (330)
T ss_dssp             SSCG
T ss_pred             cccc
Confidence            8765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.87  E-value=1.5e-22  Score=197.68  Aligned_cols=211  Identities=14%  Similarity=0.092  Sum_probs=146.2

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEec-cCcccccC-------------------------------------------
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGL-GINQISDT-------------------------------------------   37 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~~N~l~~~-------------------------------------------   37 (305)
                      .|+|++|.+.|.+|++|+++++|++|+| ++|.++|.                                           
T Consensus       327 ~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~  406 (876)
T 4ecn_A          327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD  406 (876)
T ss_dssp             EEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred             EEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHH
Confidence            5899999999999999999999999999 77765544                                           


Q ss_pred             ---------------------------------cchhhcCCCCCCEEEccccccee-----------------eeCCCCC
Q 045166           38 ---------------------------------FPSWLGTLPKLNVLILRSNIFYG-----------------IIEEPRT   67 (305)
Q Consensus        38 ---------------------------------~p~~~~~l~~L~~L~L~~N~l~~-----------------~~p~~~~   67 (305)
                                                       +|..++++++|++|+|++|.+++                 .+|..+.
T Consensus       407 ~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~  486 (876)
T 4ecn_A          407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS  486 (876)
T ss_dssp             HHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred             HhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhh
Confidence                                             88889999999999999999998                 3888872


Q ss_pred             CCCCCCccEEeCCCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCcccc--------ccccccccccCc
Q 045166           68 SCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGT--------YDYSRTMNSKGR  139 (305)
Q Consensus        68 ~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~  139 (305)
                      +.++++|++|+|++|++.|.+|.. +.++++|+.|++++|..+...     .+|..+...        .+..+.+..+.+
T Consensus       487 f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg~-----~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L  560 (876)
T 4ecn_A          487 WSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISAA-----QLKADWTRLADDEDTGPKIQIFYMGYNNL  560 (876)
T ss_dssp             GGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCHH-----HHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred             hccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCcccc-----cchHHHHhhhhcccccCCccEEEeeCCcC
Confidence            128999999999999999999965 899999999999987623210     111111110        122333333333


Q ss_pred             c--cc--cccccccccEEEccCCccccccchhhcCCCCce--------eeecCCccccCCCC-CCEEeccCCcceecCCC
Q 045166          140 V--MT--YNKIPNILAGIILSNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTF-LAFFNVSDNYLTGPIPQ  206 (305)
Q Consensus       140 ~--~~--~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~-L~~L~Ls~N~l~g~ip~  206 (305)
                      .  +.  ....+++|+.|+|++|+++ .+| .++++++|+        +. .+|..+..+++ |++|++++|+++ .+|.
T Consensus       561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~  636 (876)
T 4ecn_A          561 EEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN  636 (876)
T ss_dssp             CBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred             CccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence            2  11  2234667777777777777 677 666665555        33 56766777777 777777777777 5664


Q ss_pred             CCCC---CccCCCccCCCC
Q 045166          207 GKQF---ATFDNTSFDGNS  222 (305)
Q Consensus       207 ~~~~---~~l~~~~~~gNp  222 (305)
                      ....   ..+..+++++|.
T Consensus       637 ~~~~~~~~~L~~L~Ls~N~  655 (876)
T 4ecn_A          637 IFNAKSVYVMGSVDFSYNK  655 (876)
T ss_dssp             CCCTTCSSCEEEEECCSSC
T ss_pred             hhhccccCCCCEEECcCCc
Confidence            3221   124445555553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.87  E-value=2.8e-21  Score=169.90  Aligned_cols=209  Identities=15%  Similarity=0.145  Sum_probs=159.1

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|++++|++++..|..|.++++|++|++++|+++. +|..+.  ++|++|++++|.+++..+..+  ..+++|++|+++
T Consensus        81 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~  155 (332)
T 2ft3_A           81 YALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVF--SGLRNMNCIEMG  155 (332)
T ss_dssp             CEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGG--SSCSSCCEEECC
T ss_pred             cEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHh--CCCccCCEEECC
Confidence            579999999998889999999999999999999986 777665  899999999999987655556  889999999999


Q ss_pred             CCcccc--cCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCc---ccccccccccccEEEc
Q 045166           81 DNRFTG--KLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGR---VMTYNKIPNILAGIIL  155 (305)
Q Consensus        81 ~N~l~g--~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~~LdL  155 (305)
                      +|.++.  ..| ..+..+ +|+.|++++|....        +|..+. ..+..+++..+.+   .......+++|+.|+|
T Consensus       156 ~n~l~~~~~~~-~~~~~l-~L~~L~l~~n~l~~--------l~~~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L  224 (332)
T 2ft3_A          156 GNPLENSGFEP-GAFDGL-KLNYLRISEAKLTG--------IPKDLP-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGL  224 (332)
T ss_dssp             SCCCBGGGSCT-TSSCSC-CCSCCBCCSSBCSS--------CCSSSC-SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBC
T ss_pred             CCccccCCCCc-ccccCC-ccCEEECcCCCCCc--------cCcccc-CCCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            999962  344 447777 99999999865432        122111 1222333333333   2334455889999999


Q ss_pred             cCCccccccchhhcCCCCce---ee----ecCCccccCCCCCCEEeccCCcceecCCCCC-------CCCccCCCccCCC
Q 045166          156 SNNRFDGAIPASIANLKGLQ---FS----GRIPQQLAELTFLAFFNVSDNYLTGPIPQGK-------QFATFDNTSFDGN  221 (305)
Q Consensus       156 s~N~l~g~~p~~~~~L~~L~---l~----g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~-------~~~~l~~~~~~gN  221 (305)
                      ++|++++..|..+..+++|+   ++    ..+|..+..+++|++|++++|++++..+...       .+..+..+++.||
T Consensus       225 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N  304 (332)
T 2ft3_A          225 GHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN  304 (332)
T ss_dssp             CSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred             CCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecC
Confidence            99999987777888877776   22    2788899999999999999999996554421       1345667788999


Q ss_pred             CCCC
Q 045166          222 SGLC  225 (305)
Q Consensus       222 p~lc  225 (305)
                      |..+
T Consensus       305 ~~~~  308 (332)
T 2ft3_A          305 PVPY  308 (332)
T ss_dssp             SSCG
T ss_pred             cccc
Confidence            8764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.86  E-value=1.3e-21  Score=185.31  Aligned_cols=218  Identities=16%  Similarity=0.099  Sum_probs=140.1

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|+|++|.+++..|..|+++++|++|+|++|.+++..+..|+.+++|++|+|++|.+++..|..+  +.+++|++|+++
T Consensus       102 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~  179 (597)
T 3oja_B          102 QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF--QATTSLQNLQLS  179 (597)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECT
T ss_pred             CEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhh--hcCCcCcEEECc
Confidence            579999999998888899999999999999999998555557899999999999999999888788  899999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCccccccccccc-----------CCCCcCCCccccccccccccccCccc-ccccccc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLF-----------PYGQVSSNVLGTYDYSRTMNSKGRVM-TYNKIPN  148 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  148 (305)
                      +|.++ .++   +..+++|+.|++++|........           ....++.... ..+..+.+..+.+.. .....++
T Consensus       180 ~N~l~-~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~L~~L~L~~n~l~~~~~l~~l~  254 (597)
T 3oja_B          180 SNRLT-HVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN-VELTILKLQHNNLTDTAWLLNYP  254 (597)
T ss_dssp             TSCCS-BCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCC-SCCCEEECCSSCCCCCGGGGGCT
T ss_pred             CCCCC-CcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccC-CCCCEEECCCCCCCCChhhccCC
Confidence            99999 455   44567777777766432210000           0000000000 011111222222111 1223355


Q ss_pred             cccEEEccCCccccccchhhcCCCCce--------eee----------------------cCCccccCCCCCCEEeccCC
Q 045166          149 ILAGIILSNNRFDGAIPASIANLKGLQ--------FSG----------------------RIPQQLAELTFLAFFNVSDN  198 (305)
Q Consensus       149 ~L~~LdLs~N~l~g~~p~~~~~L~~L~--------l~g----------------------~ip~~l~~l~~L~~L~Ls~N  198 (305)
                      +|+.|||++|.+++.+|..++.+++|+        +++                      .+|..+..+++|++|+|++|
T Consensus       255 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N  334 (597)
T 3oja_B          255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN  334 (597)
T ss_dssp             TCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSS
T ss_pred             CCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCC
Confidence            666666666666666566665555544        111                      34445555556666666666


Q ss_pred             cceecCCCCCCCCccCCCccCCCCCCCCc
Q 045166          199 YLTGPIPQGKQFATFDNTSFDGNSGLCGK  227 (305)
Q Consensus       199 ~l~g~ip~~~~~~~l~~~~~~gNp~lc~~  227 (305)
                      ++++..  ...+..+..++++|||+.|.+
T Consensus       335 ~l~~~~--~~~~~~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          335 SIVTLK--LSTHHTLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             CCCCCC--CCTTCCCSEEECCSSCEEHHH
T ss_pred             CCCCcC--hhhcCCCCEEEeeCCCCCChh
Confidence            665432  234566777788888888754

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.86  E-value=1e-21  Score=184.70  Aligned_cols=197  Identities=16%  Similarity=0.204  Sum_probs=129.5

Q ss_pred             CEEEcccCccccccChhh-----hcCCC--------------------------CCEEeccCcccccCcchhhcCCCCCC
Q 045166            1 MFYLRNENTFLQRIPRSL-----INCSK--------------------------LEFLGLGINQISDTFPSWLGTLPKLN   49 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~-----~~l~~--------------------------L~~L~L~~N~l~~~~p~~~~~l~~L~   49 (305)
                      ++|++++|+++|.+|..+     ..++.                          |++|++++|.+.. .+ ....+++|+
T Consensus       279 ~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~-~~-~~~~l~~L~  356 (562)
T 3a79_B          279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH-MV-CPPSPSSFT  356 (562)
T ss_dssp             EEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCC-CC-CCSSCCCCC
T ss_pred             cEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccc-cc-CccCCCCce
Confidence            368899999988888766     33333                          4445555554432 11 115677788


Q ss_pred             EEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCCh--hhhhCcccchhccCcccccccccccCCCCcCCCcccc
Q 045166           50 VLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPS--NSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGT  127 (305)
Q Consensus        50 ~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  127 (305)
                      +|++++|.+++.+|..+  .++++|++|++++|+++ .++.  ..+..+++|+.|++++|......       |.     
T Consensus       357 ~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~-~~~~~~~~~~~l~~L~~L~l~~N~l~~~~-------~~-----  421 (562)
T 3a79_B          357 FLNFTQNVFTDSVFQGC--STLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHA-------YD-----  421 (562)
T ss_dssp             EEECCSSCCCTTTTTTC--CSCSSCCEEECCSSCCC-BTTHHHHTTTTCTTCCEEECTTSCCBSCC-------SS-----
T ss_pred             EEECCCCccccchhhhh--cccCCCCEEECCCCCcC-CcccchhhhcCCCCCCEEECCCCcCCCcc-------Ch-----
Confidence            88888888877677777  77788888888888887 3432  23677778888887775432211       10     


Q ss_pred             ccccccccccCcccccccccccccEEEccCCccccccchhhc-CCCCceeee----cCCccccCCCCCCEEeccCCccee
Q 045166          128 YDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIA-NLKGLQFSG----RIPQQLAELTFLAFFNVSDNYLTG  202 (305)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~-~L~~L~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g  202 (305)
                                    .....+++|+.|++++|++++.+|..+. +|..|.+++    .+|..+..+++|++|++++|+++ 
T Consensus       422 --------------~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-  486 (562)
T 3a79_B          422 --------------RTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-  486 (562)
T ss_dssp             --------------CCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-
T ss_pred             --------------hhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-
Confidence                          1112245666666666666666665552 444444322    56777778999999999999999 


Q ss_pred             cCCCC--CCCCccCCCccCCCCCCCCcCC
Q 045166          203 PIPQG--KQFATFDNTSFDGNSGLCGKPL  229 (305)
Q Consensus       203 ~ip~~--~~~~~l~~~~~~gNp~lc~~~~  229 (305)
                      .+|..  ..+..+..+++++||+.|+|+.
T Consensus       487 ~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          487 SVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            56653  5667788888999999998753

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.86  E-value=7.5e-22  Score=182.34  Aligned_cols=195  Identities=16%  Similarity=0.147  Sum_probs=138.0

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCC--------------
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPR--------------   66 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~--------------   66 (305)
                      ++|+|++|.+++..|..|..+++|++|+|++|.+++..|  +..+++|++|+|++|.+++..+..-              
T Consensus        37 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~  114 (487)
T 3oja_A           37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV  114 (487)
T ss_dssp             CEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCE
T ss_pred             cEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCC
Confidence            479999999998888999999999999999999998555  8899999999999999887443210              


Q ss_pred             CCCCCCCccEEeCCCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccc
Q 045166           67 TSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKI  146 (305)
Q Consensus        67 ~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (305)
                      ....+++|+.|++++|.+++..|.. ++.+++|+.|++++|...+..+       .                   .+...
T Consensus       115 ~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~-------~-------------------~l~~~  167 (487)
T 3oja_A          115 SCSRGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTVNF-------A-------------------ELAAS  167 (487)
T ss_dssp             EECCCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCCEEEG-------G-------------------GGGGG
T ss_pred             CccccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCCCCCcCh-------H-------------------HHhhh
Confidence            0124678999999999999655644 8899999999999865433111       0                   11112


Q ss_pred             cccccEEEccCCccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCcc
Q 045166          147 PNILAGIILSNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSF  218 (305)
Q Consensus       147 ~~~L~~LdLs~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~  218 (305)
                      +++|+.|||++|.|++. |.. ..+++|+        +++ +|+.+..+++|+.|+|++|++++..+....+..+..+++
T Consensus       168 l~~L~~L~Ls~N~l~~~-~~~-~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l  244 (487)
T 3oja_A          168 SDTLEHLNLQYNFIYDV-KGQ-VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDL  244 (487)
T ss_dssp             TTTCCEEECTTSCCCEE-ECC-CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEEC
T ss_pred             CCcccEEecCCCccccc-ccc-ccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEc
Confidence            45566666666666533 221 1233332        222 344577888899999999998874444455677778888


Q ss_pred             CCCCCCCCc
Q 045166          219 DGNSGLCGK  227 (305)
Q Consensus       219 ~gNp~lc~~  227 (305)
                      +||+..|++
T Consensus       245 ~~N~l~c~~  253 (487)
T 3oja_A          245 RGNGFHCGT  253 (487)
T ss_dssp             TTCCBCHHH
T ss_pred             CCCCCcCcc
Confidence            889888764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.86  E-value=2.5e-21  Score=178.38  Aligned_cols=212  Identities=17%  Similarity=0.076  Sum_probs=151.7

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|||++|++++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|+++...+..+  .++++|++|+++
T Consensus        35 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls  112 (477)
T 2id5_A           35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVF--TGLSNLTKLDIS  112 (477)
T ss_dssp             SEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSS--TTCTTCCEEECT
T ss_pred             cEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccc--cCCCCCCEEECC
Confidence            479999999998888899999999999999999999778899999999999999999987555556  789999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccC---cccccccccccccEEEccC
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKG---RVMTYNKIPNILAGIILSN  157 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~L~~LdLs~  157 (305)
                      +|++++..| ..+..+++|+.|++++|............++      .+..+.+..+.   ........+++|+.|+|++
T Consensus       113 ~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  185 (477)
T 2id5_A          113 ENKIVILLD-YMFQDLYNLKSLEVGDNDLVYISHRAFSGLN------SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH  185 (477)
T ss_dssp             TSCCCEECT-TTTTTCTTCCEEEECCTTCCEECTTSSTTCT------TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEES
T ss_pred             CCccccCCh-hHccccccCCEEECCCCccceeChhhccCCC------CCCEEECCCCcCcccChhHhcccCCCcEEeCCC
Confidence            999995555 4589999999999988654322111111111      12222222222   2223344577788888888


Q ss_pred             CccccccchhhcCCCCce---e-----eecCCccccCCCCCCEEeccCCcceecCCC--CCCCCccCCCccCCCC
Q 045166          158 NRFDGAIPASIANLKGLQ---F-----SGRIPQQLAELTFLAFFNVSDNYLTGPIPQ--GKQFATFDNTSFDGNS  222 (305)
Q Consensus       158 N~l~g~~p~~~~~L~~L~---l-----~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~--~~~~~~l~~~~~~gNp  222 (305)
                      |.+++..+..+..+++|+   +     .+.+|.......+|++|++++|++++ +|.  ...+..+..+++++|.
T Consensus       186 n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~  259 (477)
T 2id5_A          186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNP  259 (477)
T ss_dssp             CCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS-CCHHHHTTCTTCCEEECCSSC
T ss_pred             CcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc-cCHHHhcCccccCeeECCCCc
Confidence            888866666777666665   3     23455555556688888888888873 442  2455667777777775

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=1.8e-21  Score=163.17  Aligned_cols=188  Identities=11%  Similarity=0.094  Sum_probs=132.3

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcc-cccCcchhhcCCCCCCEEEccc-ccceeeeCCCCCCCCCCCccEEe
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQ-ISDTFPSWLGTLPKLNVLILRS-NIFYGIIEEPRTSCGFSKLRIID   78 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~~l~~L~~L~   78 (305)
                      ++|++++|++++..+..|.++++|++|++++|. +++..+..|.++++|++|++++ |++++..+..+  .++++|++|+
T Consensus        34 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f--~~l~~L~~L~  111 (239)
T 2xwt_C           34 QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL--KELPLLKFLG  111 (239)
T ss_dssp             CEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE--ECCTTCCEEE
T ss_pred             cEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh--CCCCCCCEEe
Confidence            468899999987777788899999999999996 8775555788899999999998 88887665666  7888999999


Q ss_pred             CCCCcccccCChhhhhCcccch---hccCcccccccccccCCCCcCCCccccccccccccccCccccccccccccc-EEE
Q 045166           79 LSDNRFTGKLPSNSFLCWNAMK---IVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILA-GII  154 (305)
Q Consensus        79 Ls~N~l~g~lp~~~~~~l~~L~---~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~Ld  154 (305)
                      +++|+++ .+|.  +..+++|+   .|++++|..+...                          ....+..+++|+ .|+
T Consensus       112 l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i--------------------------~~~~~~~l~~L~~~L~  162 (239)
T 2xwt_C          112 IFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSI--------------------------PVNAFQGLCNETLTLK  162 (239)
T ss_dssp             EEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEE--------------------------CTTTTTTTBSSEEEEE
T ss_pred             CCCCCCc-cccc--cccccccccccEEECCCCcchhhc--------------------------CcccccchhcceeEEE
Confidence            9999998 5774  77778777   8888775222211                          111122356677 777


Q ss_pred             ccCCccccccchhhcCCCCce---e------eecCCccccCC-CCCCEEeccCCcceecCCCCCCCCccCCCccCCCC
Q 045166          155 LSNNRFDGAIPASIANLKGLQ---F------SGRIPQQLAEL-TFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNS  222 (305)
Q Consensus       155 Ls~N~l~g~~p~~~~~L~~L~---l------~g~ip~~l~~l-~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp  222 (305)
                      +++|+++ .+|.......+|+   +      .+..+..|..+ ++|++|++++|++++ +|.. .+..++.+.+.++.
T Consensus       163 l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~-~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          163 LYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK-GLEHLKELIARNTW  237 (239)
T ss_dssp             CCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT-TCTTCSEEECTTC-
T ss_pred             cCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh-HhccCceeeccCcc
Confidence            7777777 5555433223333   2      22234567788 889999999999984 4543 56677666666554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.85  E-value=4.8e-21  Score=158.67  Aligned_cols=101  Identities=20%  Similarity=0.207  Sum_probs=83.8

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      +.+++++|.++ .+|..+.  ++|+.|++++|.+++..+..|..+++|++|+|++|++++..|..+  .++++|++|+|+
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~--~~l~~L~~L~Ls   88 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF--QGLRSLNSLVLY   88 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTT--TTCSSCCEEECC
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh--hCCcCCCEEECC
Confidence            35788999988 6776654  789999999999998666688999999999999999998888888  889999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCccc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSAL  107 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~  107 (305)
                      +|+++ .+|...|..+++|+.|++++|
T Consensus        89 ~N~l~-~l~~~~f~~l~~L~~L~L~~N  114 (220)
T 2v9t_B           89 GNKIT-ELPKSLFEGLFSLQLLLLNAN  114 (220)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred             CCcCC-ccCHhHccCCCCCCEEECCCC
Confidence            99999 788776666666666666554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.85  E-value=2.7e-21  Score=181.67  Aligned_cols=181  Identities=18%  Similarity=0.176  Sum_probs=113.2

Q ss_pred             hcCCCCCEEeccCcccccCc--chhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCc
Q 045166           19 INCSKLEFLGLGINQISDTF--PSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCW   96 (305)
Q Consensus        19 ~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l   96 (305)
                      ..+++|++|++++|.+++..  |..+..+++|++|++++|.+++..+. +  ..+++|++|++++|.+.+..|...+..+
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l  420 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-F--LGLEQLEHLDFQHSNLKQMSEFSVFLSL  420 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-E--ETCTTCCEEECTTSEEESCTTSCTTTTC
T ss_pred             ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-c--cccCCCCEEEccCCccccccchhhhhcC
Confidence            34445555555555554421  34444555555555555555443222 3  4455555555555555533332334455


Q ss_pred             ccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccc-cccchhhcCCCCce
Q 045166           97 NAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFD-GAIPASIANLKGLQ  175 (305)
Q Consensus        97 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~-g~~p~~~~~L~~L~  175 (305)
                      ++|+.|++++|....                           ........+++|+.|++++|+++ +.+|..+..+++|+
T Consensus       421 ~~L~~L~l~~n~l~~---------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~  473 (570)
T 2z63_A          421 RNLIYLDISHTHTRV---------------------------AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT  473 (570)
T ss_dssp             TTCCEEECTTSCCEE---------------------------CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             CCCCEEeCcCCcccc---------------------------cchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCC
Confidence            555555555432211                           11122334778899999999987 57888888777776


Q ss_pred             --------eeecCCccccCCCCCCEEeccCCcceecCCCC-CCCCccCCCccCCCCCCCCcCC
Q 045166          176 --------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKPL  229 (305)
Q Consensus       176 --------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~l~~~~~~gNp~lc~~~~  229 (305)
                              +++..|..+..+++|++|++++|++++.+|.. ..+..+..+++++||..|+++.
T Consensus       474 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             EEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence                    56677888999999999999999999877754 4677888889999999998764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.85  E-value=1.3e-20  Score=172.56  Aligned_cols=194  Identities=15%  Similarity=0.007  Sum_probs=153.9

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|.++...+..+  ..+++|++|+++
T Consensus       102 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~  179 (452)
T 3zyi_A          102 EVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF--NRVPSLMRLDLG  179 (452)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTT--TTCTTCCEEECC
T ss_pred             CEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHH--hcCCcccEEeCC
Confidence            579999999998888999999999999999999998666678999999999999999997666667  899999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCc---ccccccccccccEEEccC
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGR---VMTYNKIPNILAGIILSN  157 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~~LdLs~  157 (305)
                      +|+..+.+|...|..+++|+.|++++|.....        |.......+..+++..+.+   ....+..+++|+.|+|++
T Consensus       180 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  251 (452)
T 3zyi_A          180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--------PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN  251 (452)
T ss_dssp             CCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--------CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTT
T ss_pred             CCCCccccChhhccCCCCCCEEECCCCccccc--------ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCC
Confidence            95555588887799999999999999754321        1100011233334444433   334455688999999999


Q ss_pred             CccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecC
Q 045166          158 NRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPI  204 (305)
Q Consensus       158 N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i  204 (305)
                      |++++..|..+..+++|+        +++..+..+..+++|+.|+|++|++....
T Consensus       252 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  306 (452)
T 3zyi_A          252 SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC  306 (452)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred             CcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence            999988888888887776        45555667889999999999999987643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.85  E-value=1.3e-20  Score=172.06  Aligned_cols=193  Identities=13%  Similarity=0.033  Sum_probs=153.5

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|.++...+..+  ..+++|++|+++
T Consensus        91 ~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~l~  168 (440)
T 3zyj_A           91 EILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF--NRIPSLRRLDLG  168 (440)
T ss_dssp             CEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTT--TTCTTCCEEECC
T ss_pred             CEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHh--hhCcccCEeCCC
Confidence            579999999998888999999999999999999998666679999999999999999998766677  899999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcc---cccccccccccEEEccC
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRV---MTYNKIPNILAGIILSN  157 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~LdLs~  157 (305)
                      +|+..+.++...|.++++|+.|++++|....        +|.......+..+++..+.+.   ...+..+++|+.|+|++
T Consensus       169 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  240 (440)
T 3zyj_A          169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--------IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ  240 (440)
T ss_dssp             CCTTCCEECTTTTTTCSSCCEEECTTSCCSS--------CCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CCCCcceeCcchhhcccccCeecCCCCcCcc--------ccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCC
Confidence            9655558887779999999999999975432        111111112333444444333   33455688999999999


Q ss_pred             CccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceec
Q 045166          158 NRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGP  203 (305)
Q Consensus       158 N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~  203 (305)
                      |++++..|..|.++++|+        +++..+..+..+++|+.|+|++|++...
T Consensus       241 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  294 (440)
T 3zyj_A          241 SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN  294 (440)
T ss_dssp             CCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred             CceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence            999988888888887776        5555666788999999999999999754

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.85  E-value=2.1e-21  Score=180.69  Aligned_cols=197  Identities=17%  Similarity=0.232  Sum_probs=133.6

Q ss_pred             CEEEcccCccccccChhh-----hcCCCCCEEeccCcccccCcc-hhh-------------------------cCCCCCC
Q 045166            1 MFYLRNENTFLQRIPRSL-----INCSKLEFLGLGINQISDTFP-SWL-------------------------GTLPKLN   49 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~~p-~~~-------------------------~~l~~L~   49 (305)
                      ++|++++|+++|.+|..+     ..+++|+.+++++|.+  .+| ..+                         ..+++|+
T Consensus       250 ~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~  327 (520)
T 2z7x_B          250 WYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFL  327 (520)
T ss_dssp             SEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCC
T ss_pred             cEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCccc
Confidence            468888888888888877     7777777777777776  245 222                         4556666


Q ss_pred             EEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccc--cCChhhhhCcccchhccCcccccccccccCCCCcCCCcccc
Q 045166           50 VLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTG--KLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGT  127 (305)
Q Consensus        50 ~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g--~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  127 (305)
                      +|++++|++++.+|..+  +.+++|++|++++|++++  .+|. .+..+++|+.|++++|.....               
T Consensus       328 ~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~---------------  389 (520)
T 2z7x_B          328 HLDFSNNLLTDTVFENC--GHLTELETLILQMNQLKELSKIAE-MTTQMKSLQQLDISQNSVSYD---------------  389 (520)
T ss_dssp             EEECCSSCCCTTTTTTC--CCCSSCCEEECCSSCCCBHHHHHH-HHTTCTTCCEEECCSSCCBCC---------------
T ss_pred             EEEeECCccChhhhhhh--ccCCCCCEEEccCCccCccccchH-HHhhCCCCCEEECCCCcCCcc---------------
Confidence            66666666666555555  566666666666666663  3332 255666666666665432210               


Q ss_pred             ccccccccccCcccccccccccccEEEccCCccccccchhhc-CCCCceeee----cCCccccCCCCCCEEeccCCccee
Q 045166          128 YDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIA-NLKGLQFSG----RIPQQLAELTFLAFFNVSDNYLTG  202 (305)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~-~L~~L~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g  202 (305)
                                 ++......+++|+.|++++|++++.+|..+. +|..|.+++    .+|..+..+++|++|++++|+++ 
T Consensus       390 -----------l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-  457 (520)
T 2z7x_B          390 -----------EKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-  457 (520)
T ss_dssp             -----------GGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-
T ss_pred             -----------cccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-
Confidence                       1111223367788888888888888877773 566655332    68888889999999999999999 


Q ss_pred             cCCCC--CCCCccCCCccCCCCCCCCcCC
Q 045166          203 PIPQG--KQFATFDNTSFDGNSGLCGKPL  229 (305)
Q Consensus       203 ~ip~~--~~~~~l~~~~~~gNp~lc~~~~  229 (305)
                      .+|..  ..+..+..+++++||..|+|+.
T Consensus       458 ~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          458 SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence            56653  4567788889999999998753

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.85  E-value=9e-21  Score=185.09  Aligned_cols=207  Identities=15%  Similarity=0.124  Sum_probs=121.9

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCC-CCEEEcccccceeeeCCCCCCC-----------
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPK-LNVLILRSNIFYGIIEEPRTSC-----------   69 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~~-----------   69 (305)
                      +|+|++|+++ .+| .|+.+++|+.|++++|+++ .+|..+..+++ |++|+|++|.++ .+|..+...           
T Consensus       577 ~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls  652 (876)
T 4ecn_A          577 LLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFS  652 (876)
T ss_dssp             EEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECC
T ss_pred             EEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECc
Confidence            4566666655 555 5555666666666666655 35555555555 555555555555 344433111           


Q ss_pred             ------------------CCCCccEEeCCCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCcccc----
Q 045166           70 ------------------GFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGT----  127 (305)
Q Consensus        70 ------------------~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~----  127 (305)
                                        .+++|+.|++++|.++ .+|..++..+++|+.|++++|...        .+|......    
T Consensus       653 ~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~--------~ip~~~~~~~~~~  723 (876)
T 4ecn_A          653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT--------SIPENSLKPKDGN  723 (876)
T ss_dssp             SSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS--------CCCTTSSSCTTSC
T ss_pred             CCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC--------ccChHHhcccccc
Confidence                              2235666666666666 566555556667777777665332        122211110    


Q ss_pred             -----ccccccccccCc---ccccc-cccccccEEEccCCccccccchhhcCCCCce---e-----------eecCCccc
Q 045166          128 -----YDYSRTMNSKGR---VMTYN-KIPNILAGIILSNNRFDGAIPASIANLKGLQ---F-----------SGRIPQQL  184 (305)
Q Consensus       128 -----~~~~~~~~~~~~---~~~~~-~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~---l-----------~g~ip~~l  184 (305)
                           .+..+++..+.+   +..+. ..+++|+.|||++|++++ +|..+.++++|+   +           .+.+|..+
T Consensus       724 l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l  802 (876)
T 4ecn_A          724 YKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI  802 (876)
T ss_dssp             CTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG
T ss_pred             ccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHH
Confidence                 222333333322   22222 246778888888888885 787777776665   3           45678888


Q ss_pred             cCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCCCC
Q 045166          185 AELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGL  224 (305)
Q Consensus       185 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp~l  224 (305)
                      .++++|++|+|++|++ +.+|... ...+..+++++|+..
T Consensus       803 ~~L~~L~~L~Ls~N~L-~~Ip~~l-~~~L~~LdLs~N~l~  840 (876)
T 4ecn_A          803 TTCPSLIQLQIGSNDI-RKVDEKL-TPQLYILDIADNPNI  840 (876)
T ss_dssp             GGCSSCCEEECCSSCC-CBCCSCC-CSSSCEEECCSCTTC
T ss_pred             hcCCCCCEEECCCCCC-CccCHhh-cCCCCEEECCCCCCC
Confidence            8888888888888888 6777753 356777778888754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.85  E-value=2.8e-21  Score=165.27  Aligned_cols=157  Identities=18%  Similarity=0.190  Sum_probs=126.4

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|++++|.+++ + +.+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+  ..+++|++|+++
T Consensus        66 ~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~  141 (272)
T 3rfs_A           66 RYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF--DKLTNLTYLNLA  141 (272)
T ss_dssp             CEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred             cEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHh--ccCCCCCEEECC
Confidence            579999999986 3 489999999999999999999777778999999999999999998777667  889999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF  160 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l  160 (305)
                      +|+++ .+|...+..+++|+.|++++|.....                           .......+++|+.|++++|++
T Consensus       142 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------------~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          142 HNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSL---------------------------PEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSSCCCCC---------------------------CTTTTTTCTTCCEEECCSSCC
T ss_pred             CCccC-ccCHHHhccCccCCEEECCCCCcCcc---------------------------CHHHhcCCccCCEEECCCCcC
Confidence            99999 66666689999999999998643321                           112223478899999999999


Q ss_pred             ccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCcceecCC
Q 045166          161 DGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIP  205 (305)
Q Consensus       161 ~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip  205 (305)
                      ++..|..                +..+++|++|++++|+++|..|
T Consensus       194 ~~~~~~~----------------~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          194 KSVPDGV----------------FDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             SCCCTTT----------------TTTCTTCCEEECCSSCBCCCTT
T ss_pred             CccCHHH----------------HhCCcCCCEEEccCCCccccCc
Confidence            9654433                4556667777777777766655

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.85  E-value=6.2e-21  Score=171.33  Aligned_cols=101  Identities=22%  Similarity=0.163  Sum_probs=86.9

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|+|++|++++..|..|.++++|++|++++|.++...+..+..+++|++|++++|.+++..|..+  ..+++|++|+++
T Consensus        96 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~  173 (390)
T 3o6n_A           96 QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF--QATTSLQNLQLS  173 (390)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--SSCTTCCEEECC
T ss_pred             CEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhc--cCCCCCCEEECC
Confidence            579999999998888899999999999999999997433446899999999999999998777777  889999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCccc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSAL  107 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~  107 (305)
                      +|+++ .++   +..+++|+.+++++|
T Consensus       174 ~n~l~-~~~---~~~l~~L~~L~l~~n  196 (390)
T 3o6n_A          174 SNRLT-HVD---LSLIPSLFHANVSYN  196 (390)
T ss_dssp             SSCCS-BCC---GGGCTTCSEEECCSS
T ss_pred             CCcCC-ccc---cccccccceeecccc
Confidence            99998 555   456677777777764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.85  E-value=2.3e-21  Score=169.49  Aligned_cols=197  Identities=19%  Similarity=0.178  Sum_probs=133.8

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCC--------------
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPR--------------   66 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~--------------   66 (305)
                      ++|||++|++++..|..|..+++|++|++++|.+++..|  +..+++|++|++++|.+++..+..-              
T Consensus        37 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~  114 (317)
T 3o53_A           37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV  114 (317)
T ss_dssp             SEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEE
T ss_pred             CEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCc
Confidence            479999999998888899999999999999999988444  8899999999999999886432100              


Q ss_pred             CCCCCCCccEEeCCCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccc
Q 045166           67 TSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKI  146 (305)
Q Consensus        67 ~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (305)
                      ....+++|++|++++|++++ ++...+..+++|+.|++++|.......                          ..+...
T Consensus       115 ~~~~~~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------------------------~~~~~~  167 (317)
T 3o53_A          115 SCSRGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNF--------------------------AELAAS  167 (317)
T ss_dssp             EECCCSSCEEEECCSSCCCS-GGGBCTGGGSSEEEEECTTSCCCEEEG--------------------------GGGGGG
T ss_pred             CccccCCCCEEECCCCCCCC-ccchhhhccCCCCEEECCCCCCCcccH--------------------------HHHhhc
Confidence            01245778999999999984 544458889999999999864432111                          001112


Q ss_pred             cccccEEEccCCccccccchh--hcCCCCceeee----cCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCC
Q 045166          147 PNILAGIILSNNRFDGAIPAS--IANLKGLQFSG----RIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDG  220 (305)
Q Consensus       147 ~~~L~~LdLs~N~l~g~~p~~--~~~L~~L~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~g  220 (305)
                      +++|+.|+|++|++++. |..  +.+|..|.+++    .+|..+..+++|++|++++|++++..+....+..+..+++++
T Consensus       168 l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~  246 (317)
T 3o53_A          168 SDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG  246 (317)
T ss_dssp             TTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTT
T ss_pred             cCcCCEEECCCCcCccc-ccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccC
Confidence            34555556665555522 222  11222222221    244557778888888888888885433334566777888888


Q ss_pred             CCCCCCc
Q 045166          221 NSGLCGK  227 (305)
Q Consensus       221 Np~lc~~  227 (305)
                      |+..|++
T Consensus       247 N~~~~~~  253 (317)
T 3o53_A          247 NGFHCGT  253 (317)
T ss_dssp             CCCBHHH
T ss_pred             CCccCcC
Confidence            8888753

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.85  E-value=8.9e-21  Score=164.72  Aligned_cols=195  Identities=15%  Similarity=0.115  Sum_probs=146.3

Q ss_pred             CEEEcccCcccc--ccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeC-CCCCCCCCCCccEE
Q 045166            1 MFYLRNENTFLQ--RIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIE-EPRTSCGFSKLRII   77 (305)
Q Consensus         1 ~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~~~l~~L~~L   77 (305)
                      ++|+|++|+++.  ..|..+..+++|++|++++|.++. +|..+..+++|++|++++|.+++..+ ..+  ..+++|++|
T Consensus        55 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L  131 (306)
T 2z66_A           55 TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF--LSLRNLIYL  131 (306)
T ss_dssp             SEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTT--TTCTTCCEE
T ss_pred             CEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhh--hhccCCCEE
Confidence            478999999883  347788889999999999999987 77788899999999999999987544 355  788999999


Q ss_pred             eCCCCcccccCChhhhhCcccchhccCcccccccc-cccCCCCcCCCccccccccccccccCcc---cccccccccccEE
Q 045166           78 DLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQD-VLFPYGQVSSNVLGTYDYSRTMNSKGRV---MTYNKIPNILAGI  153 (305)
Q Consensus        78 ~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~L  153 (305)
                      ++++|.+.+..| ..+..+++|++|++++|..... .+.....++      .+..+++..+.+.   ......+++|+.|
T Consensus       132 ~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  204 (306)
T 2z66_A          132 DISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELR------NLTFLDLSQCQLEQLSPTAFNSLSSLQVL  204 (306)
T ss_dssp             ECTTSCCEECST-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCT------TCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             ECCCCcCCccch-hhcccCcCCCEEECCCCccccccchhHHhhCc------CCCEEECCCCCcCCcCHHHhcCCCCCCEE
Confidence            999999986555 4488899999999988654331 111111111      2233334433332   3344557899999


Q ss_pred             EccCCccccccchhhcCCCCce--------eeecCCccccCCC-CCCEEeccCCcceecCC
Q 045166          154 ILSNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELT-FLAFFNVSDNYLTGPIP  205 (305)
Q Consensus       154 dLs~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~-~L~~L~Ls~N~l~g~ip  205 (305)
                      +|++|++++..+..+..+++|+        +.+..|..+..++ +|++|++++|++++..+
T Consensus       205 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             ECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             ECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            9999999977676787777776        6677888888885 99999999999997643

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.85  E-value=7.2e-21  Score=186.91  Aligned_cols=108  Identities=20%  Similarity=0.123  Sum_probs=84.7

Q ss_pred             CEEEcccCcccccc-ChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166            1 MFYLRNENTFLQRI-PRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L   79 (305)
                      ++|||++|.+.+.+ |.+|.++++|++|+|++|.+++..|..|+++++|++|+|++|.+++.+|....++.+++|++||+
T Consensus        51 ~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~L  130 (844)
T 3j0a_A           51 QLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL  130 (844)
T ss_dssp             SEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEE
T ss_pred             eEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEEC
Confidence            47888888666565 77888888888888888888887788888888888888888888876665522278888888888


Q ss_pred             CCCcccccCChhhhhCcccchhccCcccc
Q 045166           80 SDNRFTGKLPSNSFLCWNAMKIVNTSALR  108 (305)
Q Consensus        80 s~N~l~g~lp~~~~~~l~~L~~L~l~~~~  108 (305)
                      ++|.+++..|...++++++|++|++++|.
T Consensus       131 s~N~l~~~~~~~~~~~L~~L~~L~Ls~N~  159 (844)
T 3j0a_A          131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQ  159 (844)
T ss_dssp             ESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred             CCCcccccccchhHhhCCCCCEEECCCCc
Confidence            88888855454457888888888887753

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.84  E-value=1.1e-20  Score=179.04  Aligned_cols=214  Identities=17%  Similarity=0.100  Sum_probs=162.0

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|++++|.+++..+..|.++++|++|++++|+++. +|..+..+++|++|++++|.+++..|..+  ..+++|++|+++
T Consensus       257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~  333 (606)
T 3t6q_A          257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISA--SNFPSLTHLSIK  333 (606)
T ss_dssp             EEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCG--GGCTTCSEEECC
T ss_pred             eEEEeecCccCccCHHHhccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhh--hccCcCCEEECC
Confidence            368999999998888889999999999999999995 89999999999999999999998778777  889999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCccccccccc--ccCCCCcCCCccccccccccccccCc---ccccccccccccEEEc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDV--LFPYGQVSSNVLGTYDYSRTMNSKGR---VMTYNKIPNILAGIIL  155 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~~LdL  155 (305)
                      +|.+.+.+|...+..+++|++|++++|......  ....+..+      .+..+.+..+.+   ....+..+++|+.|++
T Consensus       334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  407 (606)
T 3t6q_A          334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS------HLQSLNLSYNEPLSLKTEAFKECPQLELLDL  407 (606)
T ss_dssp             SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCT------TCCEEECCSCSCEEECTTTTTTCTTCSEEEC
T ss_pred             CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCC------CCCEEECCCCcCCcCCHHHhcCCccCCeEEC
Confidence            999998898877999999999999986544322  11111111      122333333332   2333445788999999


Q ss_pred             cCCccccccchh-hcCCCCce--------eeecCCccccCCCCCCEEeccCCcceec-CCC---CCCCCccCCCccCCCC
Q 045166          156 SNNRFDGAIPAS-IANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGP-IPQ---GKQFATFDNTSFDGNS  222 (305)
Q Consensus       156 s~N~l~g~~p~~-~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~-ip~---~~~~~~l~~~~~~gNp  222 (305)
                      ++|++++..|.. +.++++|+        +.+..|..+..+++|++|++++|++++. +|.   ...+.++..+++++|.
T Consensus       408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~  487 (606)
T 3t6q_A          408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD  487 (606)
T ss_dssp             TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred             CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence            999998776654 66666665        4556777888899999999999998763 232   2345666777777774


Q ss_pred             C
Q 045166          223 G  223 (305)
Q Consensus       223 ~  223 (305)
                      .
T Consensus       488 l  488 (606)
T 3t6q_A          488 L  488 (606)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.84  E-value=1.5e-20  Score=160.98  Aligned_cols=176  Identities=15%  Similarity=0.091  Sum_probs=128.6

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|++++|++++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+  ..+++|++|+++
T Consensus        55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~  132 (276)
T 2z62_A           55 QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVA  132 (276)
T ss_dssp             SEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCC--TTCTTCCEEECC
T ss_pred             cEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhc--ccCCCCCEEECc
Confidence            579999999998778899999999999999999999777889999999999999999998666567  899999999999


Q ss_pred             CCcccc-cCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCccccccccccccc----EEEc
Q 045166           81 DNRFTG-KLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILA----GIIL  155 (305)
Q Consensus        81 ~N~l~g-~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~----~LdL  155 (305)
                      +|.+++ .+|.. +..+++|+.|++++|.......       ..                    ...+.+|+    .|++
T Consensus       133 ~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~-------~~--------------------~~~l~~L~~l~l~L~l  184 (276)
T 2z62_A          133 HNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYC-------TD--------------------LRVLHQMPLLNLSLDL  184 (276)
T ss_dssp             SSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECG-------GG--------------------GHHHHTCTTCCEEEEC
T ss_pred             CCccceecCchh-hccCCCCCEEECCCCCCCcCCH-------HH--------------------hhhhhhccccceeeec
Confidence            999984 36755 8999999999999864432111       00                    00111222    4445


Q ss_pred             cCCccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCC
Q 045166          156 SNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG  207 (305)
Q Consensus       156 s~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~  207 (305)
                      ++|++++..+..+. ..+|+        +++..+..+..+++|++|++++|++++..|..
T Consensus       185 s~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l  243 (276)
T 2z62_A          185 SLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  243 (276)
T ss_dssp             CSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred             CCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence            55554422222221 11222        22222345688999999999999999887743

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.84  E-value=2.3e-20  Score=155.54  Aligned_cols=154  Identities=20%  Similarity=0.196  Sum_probs=113.9

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD   81 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~   81 (305)
                      .++.++++++ .+|..+.  ++|++|+|++|.+++..|..|..+++|++|+|++|+++...+..+  ..+++|++|+|++
T Consensus        23 ~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~--~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           23 TVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVF--DSLTQLTVLDLGT   97 (229)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCS
T ss_pred             EeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhc--ccCCCcCEEECCC
Confidence            5788888887 6776553  889999999999999778889999999999999999977555556  7899999999999


Q ss_pred             CcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccc
Q 045166           82 NRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFD  161 (305)
Q Consensus        82 N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~  161 (305)
                      |+++ .+|...|..+++|+.|++++|....        +|..                    ...+++|+.|+|++|+|+
T Consensus        98 N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~--------lp~~--------------------~~~l~~L~~L~L~~N~l~  148 (229)
T 3e6j_A           98 NQLT-VLPSAVFDRLVHLKELFMCCNKLTE--------LPRG--------------------IERLTHLTHLALDQNQLK  148 (229)
T ss_dssp             SCCC-CCCTTTTTTCTTCCEEECCSSCCCS--------CCTT--------------------GGGCTTCSEEECCSSCCC
T ss_pred             CcCC-ccChhHhCcchhhCeEeccCCcccc--------cCcc--------------------cccCCCCCEEECCCCcCC
Confidence            9999 6666667778888888777753221        1111                    122567777788887777


Q ss_pred             cccchhhcCCCCceeeecCCccccCCCCCCEEeccCCcceecCC
Q 045166          162 GAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIP  205 (305)
Q Consensus       162 g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip  205 (305)
                      + +|.               ..+..+++|++|++++|++++..+
T Consensus       149 ~-~~~---------------~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          149 S-IPH---------------GAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             C-CCT---------------TTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             c-cCH---------------HHHhCCCCCCEEEeeCCCccCCcc
Confidence            2 221               235667777788888887776554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.84  E-value=1.8e-20  Score=161.73  Aligned_cols=170  Identities=19%  Similarity=0.190  Sum_probs=136.5

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|+|++|++++..|..|.++++|++|++++|.+++ ++.. +.+++|++|++++|+++ .+|..+  ..+++|++|+++
T Consensus        34 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~--~~l~~L~~L~l~  108 (290)
T 1p9a_G           34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDLSHNQLQ-SLPLLG--QTLPALTVLDVS  108 (290)
T ss_dssp             CEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCEEECCSSCCS-SCCCCT--TTCTTCCEEECC
T ss_pred             CEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCEEECCCCcCC-cCchhh--ccCCCCCEEECC
Confidence            479999999998889999999999999999999998 5543 78999999999999998 477777  889999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF  160 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l  160 (305)
                      +|+++ .+|...|..+++|+.|++++|.....                           ....+..+++|+.|+|++|+|
T Consensus       109 ~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~---------------------------~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G          109 FNRLT-SLPLGALRGLGELQELYLKGNELKTL---------------------------PPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             SSCCC-CCCSSTTTTCTTCCEEECTTSCCCCC---------------------------CTTTTTTCTTCCEEECTTSCC
T ss_pred             CCcCc-ccCHHHHcCCCCCCEEECCCCCCCcc---------------------------ChhhcccccCCCEEECCCCcC
Confidence            99999 66666699999999999998643321                           111222367788888888888


Q ss_pred             ccccchhhcCCCCce---eee----cCCccccCCCCCCEEeccCCcceec
Q 045166          161 DGAIPASIANLKGLQ---FSG----RIPQQLAELTFLAFFNVSDNYLTGP  203 (305)
Q Consensus       161 ~g~~p~~~~~L~~L~---l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~  203 (305)
                      ++..+..+..+++|+   +++    .+|..+..+.+|+.++|++|++...
T Consensus       161 ~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             CccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCc
Confidence            844444456566665   222    6788888889999999999999753

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.84  E-value=1.6e-20  Score=180.17  Aligned_cols=106  Identities=22%  Similarity=0.240  Sum_probs=83.1

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|||++|.+++..+..|.++++|++|++++|.+++..|..++++++|++|+|++|.+++..+..+  +++++|++|+++
T Consensus        28 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~l~~L~~L~L~  105 (680)
T 1ziw_A           28 TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF--AFCTNLTELHLM  105 (680)
T ss_dssp             SEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTT--TTCTTCSEEECC
T ss_pred             cEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhh--ccCCCCCEEECC
Confidence            468888888887777778888888888888888888777788888888888888888876444456  778888888888


Q ss_pred             CCcccccCChhhhhCcccchhccCccccc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRY  109 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~  109 (305)
                      +|+++ .+|...|+++++|++|++++|..
T Consensus       106 ~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l  133 (680)
T 1ziw_A          106 SNSIQ-KIKNNPFVKQKNLITLDLSHNGL  133 (680)
T ss_dssp             SSCCC-CCCSCTTTTCTTCCEEECCSSCC
T ss_pred             CCccC-ccChhHccccCCCCEEECCCCcc
Confidence            88887 45544578888888888887644

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.84  E-value=2.5e-20  Score=173.42  Aligned_cols=103  Identities=21%  Similarity=0.156  Sum_probs=82.1

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|||++|++++..|..|.++++|++|++++|++++..|..|+++++|++|+|++|+++. +|..    .+++|++|+++
T Consensus        24 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~----~l~~L~~L~L~   98 (520)
T 2z7x_B           24 TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH----PTVNLKHLDLS   98 (520)
T ss_dssp             SEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC----CCCCCSEEECC
T ss_pred             cEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc----ccCCccEEecc
Confidence            468888888887777788888888888888888888667888888888888888888874 5543    57888888888


Q ss_pred             CCcccc-cCChhhhhCcccchhccCccccc
Q 045166           81 DNRFTG-KLPSNSFLCWNAMKIVNTSALRY  109 (305)
Q Consensus        81 ~N~l~g-~lp~~~~~~l~~L~~L~l~~~~~  109 (305)
                      +|++++ .+|.. ++.+++|++|++++|..
T Consensus        99 ~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l  127 (520)
T 2z7x_B           99 FNAFDALPICKE-FGNMSQLKFLGLSTTHL  127 (520)
T ss_dssp             SSCCSSCCCCGG-GGGCTTCCEEEEEESSC
T ss_pred             CCccccccchhh-hccCCcceEEEecCccc
Confidence            888885 45654 88888888888888654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.84  E-value=3.1e-21  Score=180.63  Aligned_cols=191  Identities=23%  Similarity=0.306  Sum_probs=129.3

Q ss_pred             CEEEcccCccccccChhh-hcCCCCCEEeccCcccccCcchh---hcCCCCCCEEEcccccceeeeC--CCCCCCCCCCc
Q 045166            1 MFYLRNENTFLQRIPRSL-INCSKLEFLGLGINQISDTFPSW---LGTLPKLNVLILRSNIFYGIIE--EPRTSCGFSKL   74 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~---~~~l~~L~~L~L~~N~l~~~~p--~~~~~~~l~~L   74 (305)
                      ++|++++|++. .+|..+ ..+++|++|++++|++++.+|..   ++.+++|++|++++|++++..+  ..+  ..+++|
T Consensus       313 ~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--~~l~~L  389 (549)
T 2z81_A          313 KRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL--LTLKNL  389 (549)
T ss_dssp             CEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHG--GGCTTC
T ss_pred             eEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhh--hcCCCC
Confidence            35777888876 666665 46888888888888887765433   5677888888888888875322  234  677888


Q ss_pred             cEEeCCCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEE
Q 045166           75 RIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGII  154 (305)
Q Consensus        75 ~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Ld  154 (305)
                      ++||+++|+++ .+|.. +..+++|+.|++++|....        ++.                      ..+++|+.||
T Consensus       390 ~~L~Ls~N~l~-~lp~~-~~~~~~L~~L~Ls~N~l~~--------l~~----------------------~~~~~L~~L~  437 (549)
T 2z81_A          390 TSLDISRNTFH-PMPDS-CQWPEKMRFLNLSSTGIRV--------VKT----------------------CIPQTLEVLD  437 (549)
T ss_dssp             CEEECTTCCCC-CCCSC-CCCCTTCCEEECTTSCCSC--------CCT----------------------TSCTTCSEEE
T ss_pred             CEEECCCCCCc-cCChh-hcccccccEEECCCCCccc--------ccc----------------------hhcCCceEEE
Confidence            88888888888 67755 6777888888888754321        010                      0123455555


Q ss_pred             ccCCccccccchhhcCCCCceeee----cCCccccCCCCCCEEeccCCcceecCCCC-CCCCccCCCccCCCCCCCCcC
Q 045166          155 LSNNRFDGAIPASIANLKGLQFSG----RIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKP  228 (305)
Q Consensus       155 Ls~N~l~g~~p~~~~~L~~L~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~l~~~~~~gNp~lc~~~  228 (305)
                      |++|++++. +..+.+|+.|.+++    .+|. ...+++|++|||++|++++.+|.. ..+..+..+++++||+.|+|+
T Consensus       438 Ls~N~l~~~-~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          438 VSNNNLDSF-SLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CCSSCCSCC-CCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CCCCChhhh-cccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            555555532 22233333333222    4554 356889999999999999887763 567788888999999999876

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.84  E-value=2.8e-20  Score=154.08  Aligned_cols=156  Identities=17%  Similarity=0.101  Sum_probs=119.7

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcc-hhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFP-SWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L   79 (305)
                      +++++++|.++ .+|..+.  ..+++|++++|++++..| ..|..+++|++|+|++|++++..+..+  .++++|++|++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~--~~l~~L~~L~L   88 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF--EGASGVNEILL   88 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEEC
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHh--CCCCCCCEEEC
Confidence            36899999998 5777653  457899999999998544 458899999999999999998777778  89999999999


Q ss_pred             CCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCc
Q 045166           80 SDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNR  159 (305)
Q Consensus        80 s~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~  159 (305)
                      ++|+++ .+|...|..+++|++|++++|.....                           ....+..+++|+.|||++|+
T Consensus        89 s~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~---------------------------~~~~~~~l~~L~~L~L~~N~  140 (220)
T 2v70_A           89 TSNRLE-NVQHKMFKGLESLKTLMLRSNRITCV---------------------------GNDSFIGLSSVRLLSLYDNQ  140 (220)
T ss_dssp             CSSCCC-CCCGGGGTTCSSCCEEECTTSCCCCB---------------------------CTTSSTTCTTCSEEECTTSC
T ss_pred             CCCccC-ccCHhHhcCCcCCCEEECCCCcCCeE---------------------------CHhHcCCCccCCEEECCCCc
Confidence            999999 56666688888888888887543221                           11122236778888888888


Q ss_pred             cccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCcceecCC
Q 045166          160 FDGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIP  205 (305)
Q Consensus       160 l~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip  205 (305)
                      +++..|                ..|..+++|++|++++|++++..+
T Consensus       141 l~~~~~----------------~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          141 ITTVAP----------------GAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CCCBCT----------------TTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CCEECH----------------HHhcCCCCCCEEEecCcCCcCCCc
Confidence            875433                445667788888888888887654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.83  E-value=2.2e-21  Score=181.70  Aligned_cols=189  Identities=19%  Similarity=0.155  Sum_probs=115.9

Q ss_pred             EEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCC
Q 045166            3 YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDN   82 (305)
Q Consensus         3 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N   82 (305)
                      .|.++|.++ .+|..+.  ++|++|++++|.+++..|..|.++++|++|++++|++++..|..+  +++++|++||+++|
T Consensus        10 c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~Ls~n   84 (549)
T 2z81_A           10 CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAF--YSLGSLEHLDLSDN   84 (549)
T ss_dssp             EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECTTS
T ss_pred             EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhc--cccccCCEEECCCC
Confidence            355666666 4555443  566777777777666556666667777777777777666555556  66667777777777


Q ss_pred             cccccCChhhhhCcccchhccCcccccccccccCCCCcCCCcccc-ccccccccccC----cccccccccccccEEEccC
Q 045166           83 RFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGT-YDYSRTMNSKG----RVMTYNKIPNILAGIILSN  157 (305)
Q Consensus        83 ~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~L~~LdLs~  157 (305)
                      +++ .+|...++.+++|++|++++|......      .+..+... .+..+++..+.    .....+..+++|+.|++++
T Consensus        85 ~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~  157 (549)
T 2z81_A           85 HLS-SLSSSWFGPLSSLKYLNLMGNPYQTLG------VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA  157 (549)
T ss_dssp             CCC-SCCHHHHTTCTTCCEEECTTCCCSSSC------SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred             ccC-ccCHHHhccCCCCcEEECCCCcccccc------hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence            766 344444666667777776665332110      01111100 12222222222    1222344578899999999


Q ss_pred             CccccccchhhcCCCCce---eee----cCCcc-ccCCCCCCEEeccCCcceec
Q 045166          158 NRFDGAIPASIANLKGLQ---FSG----RIPQQ-LAELTFLAFFNVSDNYLTGP  203 (305)
Q Consensus       158 N~l~g~~p~~~~~L~~L~---l~g----~ip~~-l~~l~~L~~L~Ls~N~l~g~  203 (305)
                      |++++.+|..++++++|+   +.+    .+|.. +..+++|++|++++|++++.
T Consensus       158 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  211 (549)
T 2z81_A          158 LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF  211 (549)
T ss_dssp             TTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred             CcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence            999998999998888776   322    23333 34688999999999999874

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.83  E-value=1.2e-21  Score=170.88  Aligned_cols=193  Identities=19%  Similarity=0.147  Sum_probs=141.6

Q ss_pred             EEEcccCccc-cccChhhh-------cCCCCCEEeccCcccccCcchhh--cCCCCCCEEEcccccceeeeCCCCCCCCC
Q 045166            2 FYLRNENTFL-QRIPRSLI-------NCSKLEFLGLGINQISDTFPSWL--GTLPKLNVLILRSNIFYGIIEEPRTSCGF   71 (305)
Q Consensus         2 ~L~Ls~N~l~-~~~p~~~~-------~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~~~~~~l   71 (305)
                      +|+|++|++. +.+|..+.       ++++|++|++++|.+++.+|..+  ..+++|++|++++|++++. |..+  +.+
T Consensus        67 ~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~--~~l  143 (312)
T 1wwl_A           67 SLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWL--AEL  143 (312)
T ss_dssp             HCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHH--HHH
T ss_pred             hcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHH--HHH
Confidence            4788899984 56777766       79999999999999998888876  8899999999999999876 6655  555


Q ss_pred             -----CCccEEeCCCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccc
Q 045166           72 -----SKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKI  146 (305)
Q Consensus        72 -----~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (305)
                           ++|++|++++|++++ ++...++.+++|++|++++|...+....+                       .......
T Consensus       144 ~~~~~~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----------------------~~~~~~~  199 (312)
T 1wwl_A          144 QQWLKPGLKVLSIAQAHSLN-FSCEQVRVFPALSTLDLSDNPELGERGLI-----------------------SALCPLK  199 (312)
T ss_dssp             HTTCCTTCCEEEEESCSCCC-CCTTTCCCCSSCCEEECCSCTTCHHHHHH-----------------------HHSCTTS
T ss_pred             HHhhcCCCcEEEeeCCCCcc-chHHHhccCCCCCEEECCCCCcCcchHHH-----------------------HHHHhcc
Confidence                 889999999999984 44344889999999999986543211000                       0001133


Q ss_pred             cccccEEEccCCcccc--ccchh-hcCCCCce--------eeecCC-ccccCCCCCCEEeccCCcceecCCCCCCCCccC
Q 045166          147 PNILAGIILSNNRFDG--AIPAS-IANLKGLQ--------FSGRIP-QQLAELTFLAFFNVSDNYLTGPIPQGKQFATFD  214 (305)
Q Consensus       147 ~~~L~~LdLs~N~l~g--~~p~~-~~~L~~L~--------l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~  214 (305)
                      +++|+.|+|++|++++  .++.. +.++++|+        +.+.+| ..+..+++|++|+|++|+++ .+|.... .++.
T Consensus       200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-~~L~  277 (312)
T 1wwl_A          200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-AKLS  277 (312)
T ss_dssp             CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-SEEE
T ss_pred             CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-CCce
Confidence            7889999999999983  33333 33444444        445554 45666889999999999998 7776544 6788


Q ss_pred             CCccCCCCC
Q 045166          215 NTSFDGNSG  223 (305)
Q Consensus       215 ~~~~~gNp~  223 (305)
                      .+++++|..
T Consensus       278 ~L~Ls~N~l  286 (312)
T 1wwl_A          278 VLDLSYNRL  286 (312)
T ss_dssp             EEECCSSCC
T ss_pred             EEECCCCCC
Confidence            888888854

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.83  E-value=7.1e-21  Score=169.33  Aligned_cols=182  Identities=20%  Similarity=0.216  Sum_probs=138.3

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhc-CCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLG-TLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L   79 (305)
                      +++++++|+++ .+|..+.  ..++.|+|++|+|++..+..+. .+++|++|+|++|++++..+..+  .++++|++|+|
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~--~~l~~L~~L~L   95 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF--VPVPNLRYLDL   95 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEEC
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhc--cCCCCCCEEEC
Confidence            36899999998 6776554  4689999999999996666677 89999999999999998777778  89999999999


Q ss_pred             CCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCc
Q 045166           80 SDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNR  159 (305)
Q Consensus        80 s~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~  159 (305)
                      ++|+++ .+|...|..+++|+.|++++|.....                           ....+..+++|+.|+|++|+
T Consensus        96 s~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~---------------------------~~~~~~~l~~L~~L~L~~N~  147 (361)
T 2xot_A           96 SSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVV---------------------------DRNAFEDMAQLQKLYLSQNQ  147 (361)
T ss_dssp             CSSCCC-EECTTTTTTCTTCCEEECCSSCCCEE---------------------------CTTTTTTCTTCCEEECCSSC
T ss_pred             CCCcCC-cCCHHHhCCCcCCCEEECCCCcccEE---------------------------CHHHhCCcccCCEEECCCCc
Confidence            999999 66666799999999999998644321                           11222347889999999999


Q ss_pred             cccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCcceecCCCC-CCCCc--cCCCccCCCCCCCCcC
Q 045166          160 FDGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFAT--FDNTSFDGNSGLCGKP  228 (305)
Q Consensus       160 l~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~--l~~~~~~gNp~lc~~~  228 (305)
                      |+ .+|..+.            ..+..+++|++|||++|+|++..+.. ..+..  +..+.+.+||+.|+|.
T Consensus       148 l~-~l~~~~~------------~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          148 IS-RFPVELI------------KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK  206 (361)
T ss_dssp             CC-SCCGGGT------------C----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred             CC-eeCHHHh------------cCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence            99 4444320            11256889999999999999533221 12222  3567899999999874

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=8e-21  Score=155.83  Aligned_cols=135  Identities=15%  Similarity=0.132  Sum_probs=101.2

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD   81 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~   81 (305)
                      .++.+++.++ .+|..+  .++|++|++++|++++..+..+..+++|++|++++|++++..+..+  ..+++|++|++++
T Consensus        11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVF--NKLTSLTYLNLST   85 (208)
T ss_dssp             EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECCS
T ss_pred             EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhc--CCCCCcCEEECCC
Confidence            5778888887 566544  4689999999999988666667889999999999999987655556  7889999999999


Q ss_pred             CcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccc
Q 045166           82 NRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFD  161 (305)
Q Consensus        82 N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~  161 (305)
                      |+++ .+|...+..+++|++|++++|....                           .....+..+++|+.|++++|+++
T Consensus        86 n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~---------------------------~~~~~~~~l~~L~~L~l~~N~l~  137 (208)
T 2o6s_A           86 NQLQ-SLPNGVFDKLTQLKELALNTNQLQS---------------------------LPDGVFDKLTQLKDLRLYQNQLK  137 (208)
T ss_dssp             SCCC-CCCTTTTTTCTTCCEEECCSSCCCC---------------------------CCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CcCC-ccCHhHhcCccCCCEEEcCCCcCcc---------------------------cCHhHhccCCcCCEEECCCCccc
Confidence            9998 6666668889999999998854321                           11112233678999999999998


Q ss_pred             cccchhhc
Q 045166          162 GAIPASIA  169 (305)
Q Consensus       162 g~~p~~~~  169 (305)
                      +..+..+.
T Consensus       138 ~~~~~~~~  145 (208)
T 2o6s_A          138 SVPDGVFD  145 (208)
T ss_dssp             CCCTTTTT
T ss_pred             eeCHHHhc
Confidence            44333333

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.82  E-value=4.6e-20  Score=173.31  Aligned_cols=106  Identities=17%  Similarity=0.115  Sum_probs=92.7

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|||++|++++..+.+|.++++|++|++++|++++..|..|.++++|++|++++|.+++..|..+  .++++|++|+++
T Consensus        31 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~  108 (570)
T 2z63_A           31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKLVAV  108 (570)
T ss_dssp             CEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT--TTCTTCCEEECT
T ss_pred             cEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhh--cCcccccccccc
Confidence            479999999998888899999999999999999998667789999999999999999998777778  889999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCccccc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRY  109 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~  109 (305)
                      +|+++ .+|...++.+++|++|++++|..
T Consensus       109 ~n~l~-~l~~~~~~~l~~L~~L~L~~n~l  136 (570)
T 2z63_A          109 ETNLA-SLENFPIGHLKTLKELNVAHNLI  136 (570)
T ss_dssp             TSCCC-CSTTCSCTTCTTCCEEECCSSCC
T ss_pred             ccccc-cCCCccccccccccEEecCCCcc
Confidence            99998 66654488899999999988643

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.82  E-value=1.1e-19  Score=170.93  Aligned_cols=103  Identities=20%  Similarity=0.123  Sum_probs=79.6

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|||++|++++..|.+|.++++|++|++++|++++..|+.|.++++|++|+|++|+++. +|..    .+++|++||++
T Consensus        55 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~----~l~~L~~L~Ls  129 (562)
T 3a79_B           55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCC----PMASLRHLDLS  129 (562)
T ss_dssp             CEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSC----CCTTCSEEECC
T ss_pred             CEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCcc----ccccCCEEECC
Confidence            468888888887777788888888888888888888667778888888888888888874 5543    57888888888


Q ss_pred             CCcccc-cCChhhhhCcccchhccCccccc
Q 045166           81 DNRFTG-KLPSNSFLCWNAMKIVNTSALRY  109 (305)
Q Consensus        81 ~N~l~g-~lp~~~~~~l~~L~~L~l~~~~~  109 (305)
                      +|++++ .+|.. ++++++|++|++++|..
T Consensus       130 ~N~l~~l~~p~~-~~~l~~L~~L~L~~n~l  158 (562)
T 3a79_B          130 FNDFDVLPVCKE-FGNLTKLTFLGLSAAKF  158 (562)
T ss_dssp             SSCCSBCCCCGG-GGGCTTCCEEEEECSBC
T ss_pred             CCCccccCchHh-hcccCcccEEecCCCcc
Confidence            888874 23433 88888888888887544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.82  E-value=1.7e-20  Score=166.31  Aligned_cols=196  Identities=19%  Similarity=0.230  Sum_probs=143.0

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCC--CCCCCCCCCccEEe
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEE--PRTSCGFSKLRIID   78 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~--~~~~~~l~~L~~L~   78 (305)
                      ++|++++|++++..|..|.++++|++|++++|++++..+..+..+++|++|++++|++++ +|.  .+  ..+++|++|+
T Consensus        79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~--~~l~~L~~L~  155 (353)
T 2z80_A           79 QALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLF--SHLTKLQILR  155 (353)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSC--TTCTTCCEEE
T ss_pred             CEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhh--ccCCCCcEEE
Confidence            579999999998888899999999999999999998444458999999999999999986 554  56  7899999999


Q ss_pred             CCCCc-ccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCc---ccccccccccccEEE
Q 045166           79 LSDNR-FTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGR---VMTYNKIPNILAGII  154 (305)
Q Consensus        79 Ls~N~-l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~~Ld  154 (305)
                      +++|+ +. .++...+..+++|+.|++++|..........+.++      .+..+++..+.+   ...+...+++|+.|+
T Consensus       156 l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~------~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  228 (353)
T 2z80_A          156 VGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ------NVSHLILHMKQHILLLEIFVDVTSSVECLE  228 (353)
T ss_dssp             EEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS------EEEEEEEECSCSTTHHHHHHHHTTTEEEEE
T ss_pred             CCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccc------cCCeecCCCCccccchhhhhhhcccccEEE
Confidence            99995 66 66555589999999999998654332111111111      122223333322   222233367788888


Q ss_pred             ccCCccccc-------------------------------cchhhcCCCCce---eee----cCCcc-ccCCCCCCEEec
Q 045166          155 LSNNRFDGA-------------------------------IPASIANLKGLQ---FSG----RIPQQ-LAELTFLAFFNV  195 (305)
Q Consensus       155 Ls~N~l~g~-------------------------------~p~~~~~L~~L~---l~g----~ip~~-l~~l~~L~~L~L  195 (305)
                      +++|++++.                               +|..+.++++|+   +++    .+|.. +..+++|++|++
T Consensus       229 L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L  308 (353)
T 2z80_A          229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWL  308 (353)
T ss_dssp             EESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEe
Confidence            888887752                               455666666666   222    56766 589999999999


Q ss_pred             cCCcceecCCC
Q 045166          196 SDNYLTGPIPQ  206 (305)
Q Consensus       196 s~N~l~g~ip~  206 (305)
                      ++|++++..|.
T Consensus       309 ~~N~~~~~~~~  319 (353)
T 2z80_A          309 HTNPWDCSCPR  319 (353)
T ss_dssp             CSSCBCCCHHH
T ss_pred             eCCCccCcCCC
Confidence            99999987763

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.82  E-value=7e-20  Score=173.49  Aligned_cols=196  Identities=15%  Similarity=0.094  Sum_probs=152.0

Q ss_pred             CEEEcccCccccc--cChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeC-CCCCCCCCCCccEE
Q 045166            1 MFYLRNENTFLQR--IPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIE-EPRTSCGFSKLRII   77 (305)
Q Consensus         1 ~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~~~l~~L~~L   77 (305)
                      ++|++++|++++.  +|..+..+++|++|++++|.+++ +|..+..+++|++|++++|++.+..| ..+  ..+++|++|
T Consensus       353 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L  429 (606)
T 3vq2_A          353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAF--LSLEKLLYL  429 (606)
T ss_dssp             CEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTT--TTCTTCCEE
T ss_pred             CEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhh--hccccCCEE
Confidence            4799999999866  48899999999999999999987 77888999999999999999988766 456  789999999


Q ss_pred             eCCCCcccccCChhhhhCcccchhccCcccccccc-cccCCCCcCCCccccccccccccccCcc---cccccccccccEE
Q 045166           78 DLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQD-VLFPYGQVSSNVLGTYDYSRTMNSKGRV---MTYNKIPNILAGI  153 (305)
Q Consensus        78 ~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~L  153 (305)
                      ++++|.+++..|.. +..+++|+.|++++|...+. .+...+.+      ..+..+++..+.+.   ......+++|+.|
T Consensus       430 ~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  502 (606)
T 3vq2_A          430 DISYTNTKIDFDGI-FLGLTSLNTLKMAGNSFKDNTLSNVFANT------TNLTFLDLSKCQLEQISWGVFDTLHRLQLL  502 (606)
T ss_dssp             ECTTSCCEECCTTT-TTTCTTCCEEECTTCEEGGGEECSCCTTC------TTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             ECcCCCCCccchhh-hcCCCCCCEEECCCCcCCCcchHHhhccC------CCCCEEECCCCcCCccChhhhcccccCCEE
Confidence            99999999767754 88999999999998755431 11111111      12333444444333   3334558899999


Q ss_pred             EccCCccccccchhhcCCCCce---eee----cCCccccCCC-CCCEEeccCCcceecCCC
Q 045166          154 ILSNNRFDGAIPASIANLKGLQ---FSG----RIPQQLAELT-FLAFFNVSDNYLTGPIPQ  206 (305)
Q Consensus       154 dLs~N~l~g~~p~~~~~L~~L~---l~g----~ip~~l~~l~-~L~~L~Ls~N~l~g~ip~  206 (305)
                      +|++|++++.+|..+.++++|+   +++    .+|..+..++ +|++|++++|++.+..+.
T Consensus       503 ~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             ECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             ECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            9999999988899999888877   222    5777788887 699999999999987664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.81  E-value=2.1e-19  Score=151.72  Aligned_cols=145  Identities=18%  Similarity=0.128  Sum_probs=121.8

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|+|++|++++..|..|.++++|++|++++|.+++..|..+..+++|++|++++|++++..+..+  ..+++|++|+++
T Consensus        38 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~  115 (251)
T 3m19_A           38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVF--DHLTQLDKLYLG  115 (251)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred             CEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHh--cccCCCCEEEcC
Confidence            479999999998888899999999999999999999777789999999999999999998776777  889999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF  160 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l  160 (305)
                      +|+++ .+|...+..+++|+.|++++|.....                           ....+..+++|+.|||++|++
T Consensus       116 ~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~---------------------------~~~~~~~l~~L~~L~L~~N~l  167 (251)
T 3m19_A          116 GNQLK-SLPSGVFDRLTKLKELRLNTNQLQSI---------------------------PAGAFDKLTNLQTLSLSTNQL  167 (251)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSSCCCCC---------------------------CTTTTTTCTTCCEEECCSSCC
T ss_pred             CCcCC-CcChhHhccCCcccEEECcCCcCCcc---------------------------CHHHcCcCcCCCEEECCCCcC
Confidence            99999 67767789999999999998643221                           111223367899999999999


Q ss_pred             ccccchhhcCCCCce
Q 045166          161 DGAIPASIANLKGLQ  175 (305)
Q Consensus       161 ~g~~p~~~~~L~~L~  175 (305)
                      ++..|..+.++++|+
T Consensus       168 ~~~~~~~~~~l~~L~  182 (251)
T 3m19_A          168 QSVPHGAFDRLGKLQ  182 (251)
T ss_dssp             SCCCTTTTTTCTTCC
T ss_pred             CccCHHHHhCCCCCC
Confidence            966666777766665

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.81  E-value=2.5e-19  Score=145.70  Aligned_cols=149  Identities=9%  Similarity=0.089  Sum_probs=115.5

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|++++|.++ .+| .+..+++|++|++++|.++.  +..+..+++|++|++++|.+++..|..+  +.+++|++|+++
T Consensus        47 ~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~Ls  120 (197)
T 4ezg_A           47 TYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNL--SGLTSLTLLDIS  120 (197)
T ss_dssp             CEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCC--TTCTTCCEEECC
T ss_pred             cEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhh--cCCCCCCEEEec
Confidence            47899999998 666 68899999999999997764  3478889999999999999988778888  889999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF  160 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l  160 (305)
                      +|.+++..|.. +..+++|+.|++++|..+....                            ....+++|+.|++++|++
T Consensus       121 ~n~i~~~~~~~-l~~l~~L~~L~L~~n~~i~~~~----------------------------~l~~l~~L~~L~l~~n~i  171 (197)
T 4ezg_A          121 HSAHDDSILTK-INTLPKVNSIDLSYNGAITDIM----------------------------PLKTLPELKSLNIQFDGV  171 (197)
T ss_dssp             SSBCBGGGHHH-HTTCSSCCEEECCSCTBCCCCG----------------------------GGGGCSSCCEEECTTBCC
T ss_pred             CCccCcHhHHH-HhhCCCCCEEEccCCCCccccH----------------------------hhcCCCCCCEEECCCCCC
Confidence            99998666654 8889999999988864332111                            122367899999999988


Q ss_pred             ccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCccee
Q 045166          161 DGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTG  202 (305)
Q Consensus       161 ~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g  202 (305)
                      ++ ++                 .+..+++|++|++++|++.+
T Consensus       172 ~~-~~-----------------~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          172 HD-YR-----------------GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CC-CT-----------------TGGGCSSCCEEEECBC----
T ss_pred             cC-hH-----------------HhccCCCCCEEEeeCcccCC
Confidence            83 22                 35678889999999998864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.80  E-value=7.9e-20  Score=148.13  Aligned_cols=132  Identities=22%  Similarity=0.248  Sum_probs=103.1

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcch-hhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPS-WLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L   79 (305)
                      +++++++|+++ .+|..+..  +|++|++++|++++..+. .+..+++|++|+|++|++++..|..+  .++++|++|+|
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L   85 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF--EGASHIQELQL   85 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT--TTCTTCCEEEC
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHc--CCcccCCEEEC
Confidence            46899999996 77776544  899999999999885443 48899999999999999998888888  88999999999


Q ss_pred             CCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCc
Q 045166           80 SDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNR  159 (305)
Q Consensus        80 s~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~  159 (305)
                      ++|++++..| ..|..                                                   +++|+.|||++|+
T Consensus        86 s~N~l~~~~~-~~~~~---------------------------------------------------l~~L~~L~L~~N~  113 (192)
T 1w8a_A           86 GENKIKEISN-KMFLG---------------------------------------------------LHQLKTLNLYDNQ  113 (192)
T ss_dssp             CSCCCCEECS-SSSTT---------------------------------------------------CTTCCEEECCSSC
T ss_pred             CCCcCCccCH-HHhcC---------------------------------------------------CCCCCEEECCCCc
Confidence            9999984433 32332                                                   4567788888888


Q ss_pred             cccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCcceecCC
Q 045166          160 FDGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIP  205 (305)
Q Consensus       160 l~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip  205 (305)
                      |++..|                ..+..+++|++|+|++|++++..+
T Consensus       114 l~~~~~----------------~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          114 ISCVMP----------------GSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCEECT----------------TSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCeeCH----------------HHhhcCCCCCEEEeCCCCccCcCc
Confidence            885444                445677788888888888887665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.80  E-value=2.8e-19  Score=155.62  Aligned_cols=179  Identities=17%  Similarity=0.175  Sum_probs=120.3

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|++++|.++ .+| .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ ++ .+  ..+++|++|+++
T Consensus        44 ~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~--~~l~~L~~L~l~  115 (308)
T 1h6u_A           44 TTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AI--AGLQSIKTLDLT  115 (308)
T ss_dssp             CEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GG--TTCTTCCEEECT
T ss_pred             CEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hh--cCCCCCCEEECC
Confidence            47899999988 455 68899999999999999987 555 8899999999999999986 34 45  789999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF  160 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l  160 (305)
                      +|+++ .+|.  +..+++|+.|++++|.......                             ...+++|+.|++++|++
T Consensus       116 ~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~-----------------------------l~~l~~L~~L~l~~n~l  163 (308)
T 1h6u_A          116 STQIT-DVTP--LAGLSNLQVLYLDLNQITNISP-----------------------------LAGLTNLQYLSIGNAQV  163 (308)
T ss_dssp             TSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG-----------------------------GGGCTTCCEEECCSSCC
T ss_pred             CCCCC-Cchh--hcCCCCCCEEECCCCccCcCcc-----------------------------ccCCCCccEEEccCCcC
Confidence            99998 5663  8889999999998864322110                             11244555555555555


Q ss_pred             ccccchhhcCCCCce---eee----cCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCCC
Q 045166          161 DGAIPASIANLKGLQ---FSG----RIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSG  223 (305)
Q Consensus       161 ~g~~p~~~~~L~~L~---l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp~  223 (305)
                      ++ ++. +..+++|+   +++    .++. +..+++|++|++++|++++..| ...+..+..+++++|+.
T Consensus       164 ~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          164 SD-LTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             CC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEE
T ss_pred             CC-Chh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCee
Confidence            53 232 44444443   111    1222 5566666666666666664432 33445555555566654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.79  E-value=1.8e-18  Score=158.50  Aligned_cols=96  Identities=17%  Similarity=0.150  Sum_probs=80.7

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++||+++|.+++ +| .+..+++|++|++++|++++ +|  ++.+++|++|++++|.+++. |  +  +.+++|++|+++
T Consensus        45 ~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~--~~l~~L~~L~L~  114 (457)
T 3bz5_A           45 TSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--V--TPLTKLTYLNCD  114 (457)
T ss_dssp             CEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--C--TTCTTCCEEECC
T ss_pred             CEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--c--CCCCcCCEEECC
Confidence            578999999986 45 68999999999999999988 55  88899999999999999874 3  5  788999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYL  110 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~  110 (305)
                      +|+++ .+|   ++.+++|+.|++++|...
T Consensus       115 ~N~l~-~l~---~~~l~~L~~L~l~~N~l~  140 (457)
T 3bz5_A          115 TNKLT-KLD---VSQNPLLTYLNCARNTLT  140 (457)
T ss_dssp             SSCCS-CCC---CTTCTTCCEEECTTSCCS
T ss_pred             CCcCC-eec---CCCCCcCCEEECCCCccc
Confidence            99998 465   778889999998886543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=1.7e-18  Score=141.94  Aligned_cols=154  Identities=16%  Similarity=0.116  Sum_probs=122.0

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+  ..+++|++|+++
T Consensus        31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~  108 (208)
T 2o6s_A           31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVF--DKLTQLKELALN  108 (208)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred             cEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHh--cCccCCCEEEcC
Confidence            478999999997777778899999999999999988555567889999999999999987665556  788999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF  160 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l  160 (305)
                      +|+++ .+|...+..+++|+.|++++|....                           ........+++|+.|++++|.+
T Consensus       109 ~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~---------------------------~~~~~~~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A          109 TNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKS---------------------------VPDGVFDRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSSCCSC---------------------------CCTTTTTTCTTCCEEECCSCCB
T ss_pred             CCcCc-ccCHhHhccCCcCCEEECCCCccce---------------------------eCHHHhccCCCccEEEecCCCe
Confidence            99998 5666668889999999988854321                           1111223367899999999977


Q ss_pred             ccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCcceecCCCC
Q 045166          161 DGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG  207 (305)
Q Consensus       161 ~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~  207 (305)
                      .                       +.+++|++|+++.|+++|.+|..
T Consensus       161 ~-----------------------~~~~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          161 D-----------------------CTCPGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             C-----------------------CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred             e-----------------------cCCCCHHHHHHHHHhCCceeecc
Confidence            6                       34567889999999999999863

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=1.3e-18  Score=144.97  Aligned_cols=134  Identities=17%  Similarity=0.098  Sum_probs=113.2

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|+|++|++++..|..|.++++|++|+|++|+++...+..|..+++|++|+|++|++++..+..+  ..+++|++|+++
T Consensus        43 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~--~~l~~L~~L~Ls  120 (229)
T 3e6j_A           43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF--DRLVHLKELFMC  120 (229)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred             CEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHh--CcchhhCeEecc
Confidence            579999999999889999999999999999999988555678899999999999999998766667  789999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF  160 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l  160 (305)
                      +|+++ .+|.. +..+++|+.|++++|.....                           ....+..+++|+.|+|++|.+
T Consensus       121 ~N~l~-~lp~~-~~~l~~L~~L~L~~N~l~~~---------------------------~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          121 CNKLT-ELPRG-IERLTHLTHLALDQNQLKSI---------------------------PHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             SSCCC-SCCTT-GGGCTTCSEEECCSSCCCCC---------------------------CTTTTTTCTTCCEEECTTSCB
T ss_pred             CCccc-ccCcc-cccCCCCCEEECCCCcCCcc---------------------------CHHHHhCCCCCCEEEeeCCCc
Confidence            99999 89976 78999999999998643321                           112223478899999999999


Q ss_pred             ccccc
Q 045166          161 DGAIP  165 (305)
Q Consensus       161 ~g~~p  165 (305)
                      .+..+
T Consensus       172 ~c~c~  176 (229)
T 3e6j_A          172 DCECR  176 (229)
T ss_dssp             CTTBG
T ss_pred             cCCcc
Confidence            86543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=6.6e-19  Score=145.75  Aligned_cols=135  Identities=17%  Similarity=0.132  Sum_probs=112.4

Q ss_pred             CEEEcccCccccccC-hhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166            1 MFYLRNENTFLQRIP-RSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L   79 (305)
                      ++|+|++|++++..| ..|..+++|++|++++|++++..+..|..+++|++|+|++|.+++..+..+  .++++|++|+|
T Consensus        35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L  112 (220)
T 2v70_A           35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMF--KGLESLKTLML  112 (220)
T ss_dssp             SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGG--TTCSSCCEEEC
T ss_pred             CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHh--cCCcCCCEEEC
Confidence            479999999997755 468999999999999999999777789999999999999999998777667  88999999999


Q ss_pred             CCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCc
Q 045166           80 SDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNR  159 (305)
Q Consensus        80 s~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~  159 (305)
                      ++|++++..| ..|..+++|+.|++++|.....                           ....+..+++|+.|+|++|.
T Consensus       113 s~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~---------------------------~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          113 RSNRITCVGN-DSFIGLSSVRLLSLYDNQITTV---------------------------APGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             TTSCCCCBCT-TSSTTCTTCSEEECTTSCCCCB---------------------------CTTTTTTCTTCCEEECCSCC
T ss_pred             CCCcCCeECH-hHcCCCccCCEEECCCCcCCEE---------------------------CHHHhcCCCCCCEEEecCcC
Confidence            9999995555 4589999999999998644321                           11222347889999999999


Q ss_pred             cccccc
Q 045166          160 FDGAIP  165 (305)
Q Consensus       160 l~g~~p  165 (305)
                      +++..+
T Consensus       165 l~c~c~  170 (220)
T 2v70_A          165 FNCNCY  170 (220)
T ss_dssp             EECSGG
T ss_pred             CcCCCc
Confidence            986554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=1.3e-18  Score=144.08  Aligned_cols=133  Identities=21%  Similarity=0.212  Sum_probs=110.4

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|+|++|++++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|+++...+..+  .++++|++|+|+
T Consensus        35 ~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f--~~l~~L~~L~L~  112 (220)
T 2v9t_B           35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLF--EGLFSLQLLLLN  112 (220)
T ss_dssp             CEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred             CEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHc--cCCCCCCEEECC
Confidence            479999999998778899999999999999999999779999999999999999999997555556  789999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF  160 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l  160 (305)
                      +|++++ ++...|..                                                   +++|+.|||++|+|
T Consensus       113 ~N~l~~-~~~~~~~~---------------------------------------------------l~~L~~L~L~~N~l  140 (220)
T 2v9t_B          113 ANKINC-LRVDAFQD---------------------------------------------------LHNLNLLSLYDNKL  140 (220)
T ss_dssp             SSCCCC-CCTTTTTT---------------------------------------------------CTTCCEEECCSSCC
T ss_pred             CCCCCE-eCHHHcCC---------------------------------------------------CCCCCEEECCCCcC
Confidence            999994 44332432                                                   45678888889988


Q ss_pred             ccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCcceec
Q 045166          161 DGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGP  203 (305)
Q Consensus       161 ~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~  203 (305)
                      ++..+                ..+..+++|++|++++|++.+.
T Consensus       141 ~~~~~----------------~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          141 QTIAK----------------GTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             SCCCT----------------TTTTTCTTCCEEECCSSCEECS
T ss_pred             CEECH----------------HHHhCCCCCCEEEeCCCCcCCC
Confidence            84332                3456788899999999998753

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=4.6e-19  Score=157.63  Aligned_cols=159  Identities=16%  Similarity=0.072  Sum_probs=124.5

Q ss_pred             CEEEcccCccccccChhhh-cCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166            1 MFYLRNENTFLQRIPRSLI-NCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L   79 (305)
                      ++|||++|++++..+..|. ++++|++|+|++|+|++..|..|..+++|++|+|++|++++..+..+  .++++|++|+|
T Consensus        42 ~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L  119 (361)
T 2xot_A           42 ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLF--SDLQALEVLLL  119 (361)
T ss_dssp             SEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEEC
T ss_pred             CEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHh--CCCcCCCEEEC
Confidence            4799999999987788887 99999999999999999777789999999999999999998776677  89999999999


Q ss_pred             CCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCc
Q 045166           80 SDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNR  159 (305)
Q Consensus        80 s~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~  159 (305)
                      ++|++++ ++...|..+++|+.|++++|....        +|...+.                ....+++|+.|||++|+
T Consensus       120 ~~N~i~~-~~~~~~~~l~~L~~L~L~~N~l~~--------l~~~~~~----------------~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A          120 YNNHIVV-VDRNAFEDMAQLQKLYLSQNQISR--------FPVELIK----------------DGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             CSSCCCE-ECTTTTTTCTTCCEEECCSSCCCS--------CCGGGTC--------------------CTTCCEEECCSSC
T ss_pred             CCCcccE-ECHHHhCCcccCCEEECCCCcCCe--------eCHHHhc----------------CcccCCcCCEEECCCCC
Confidence            9999994 544559999999999999864332        1111000                00237889999999999


Q ss_pred             cccccchhhcCCCCceeeecCCccccCCCC--CCEEeccCCccee
Q 045166          160 FDGAIPASIANLKGLQFSGRIPQQLAELTF--LAFFNVSDNYLTG  202 (305)
Q Consensus       160 l~g~~p~~~~~L~~L~l~g~ip~~l~~l~~--L~~L~Ls~N~l~g  202 (305)
                      |++..+..+                ..++.  ++.|+|++|++..
T Consensus       175 l~~l~~~~~----------------~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          175 LKKLPLTDL----------------QKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CCCCCHHHH----------------HHSCHHHHTTEECCSSCEEC
T ss_pred             CCccCHHHh----------------hhccHhhcceEEecCCCccC
Confidence            994333344                33333  4678888888864

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.78  E-value=1e-18  Score=154.30  Aligned_cols=202  Identities=16%  Similarity=0.144  Sum_probs=138.2

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|++++|.....++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.+..+  +  ..+++|++|+++
T Consensus       135 ~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~l~  207 (347)
T 4fmz_A          135 YSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLSLNYNQIEDISP--L--ASLTSLHYFTAY  207 (347)
T ss_dssp             CEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECTTSCCCCCGG--G--GGCTTCCEEECC
T ss_pred             eEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC-chh-hccCCCCCEEEccCCccccccc--c--cCCCccceeecc
Confidence            478899997664544 48889999999999999887 443 7888999999999998876433  5  678888999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCccc-ccccccccccEEEccCCc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVM-TYNKIPNILAGIILSNNR  159 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~LdLs~N~  159 (305)
                      +|.+. .++.  +..+++|+.|++++|.......  ....+      .+..+++..+.+.. .....+++|+.|++++|+
T Consensus       208 ~n~l~-~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~------~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~  276 (347)
T 4fmz_A          208 VNQIT-DITP--VANMTRLNSLKIGNNKITDLSP--LANLS------QLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQ  276 (347)
T ss_dssp             SSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCT------TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred             cCCCC-CCch--hhcCCcCCEEEccCCccCCCcc--hhcCC------CCCEEECCCCccCCChhHhcCCCcCEEEccCCc
Confidence            88888 4443  7788888888888864432211  11110      11222222222211 223447788889999998


Q ss_pred             cccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCCC
Q 045166          160 FDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSG  223 (305)
Q Consensus       160 l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp~  223 (305)
                      +++ +| .+..+++|+        +.+..|..+..+++|++|++++|++++..| ...+..+..+++++|+.
T Consensus       277 l~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          277 ISD-IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI  345 (347)
T ss_dssp             CCC-CG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred             cCC-Ch-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence            884 43 455555555        445666778888999999999999887666 55677777788888863

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.78  E-value=1.1e-18  Score=165.66  Aligned_cols=101  Identities=21%  Similarity=0.214  Sum_probs=86.6

Q ss_pred             EEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCC
Q 045166            3 YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDN   82 (305)
Q Consensus         3 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N   82 (305)
                      .|-++.+++ .+|..+.  +++++|||++|+|++..|..|.++++|++|+|++|++++..|..|  .++++|++|+|++|
T Consensus        36 ~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f--~~L~~L~~L~Ls~N  110 (635)
T 4g8a_A           36 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY--QSLSHLSTLILTGN  110 (635)
T ss_dssp             EECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT--TTCTTCCEEECTTC
T ss_pred             EECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHh--cCCCCCCEEEccCC
Confidence            455566676 6776542  589999999999999666789999999999999999998777778  89999999999999


Q ss_pred             cccccCChhhhhCcccchhccCccccc
Q 045166           83 RFTGKLPSNSFLCWNAMKIVNTSALRY  109 (305)
Q Consensus        83 ~l~g~lp~~~~~~l~~L~~L~l~~~~~  109 (305)
                      +++ .+|.+.|.++++|++|++++|+.
T Consensus       111 ~l~-~l~~~~f~~L~~L~~L~Ls~N~l  136 (635)
T 4g8a_A          111 PIQ-SLALGAFSGLSSLQKLVAVETNL  136 (635)
T ss_dssp             CCC-EECGGGGTTCTTCCEEECTTSCC
T ss_pred             cCC-CCCHHHhcCCCCCCEEECCCCcC
Confidence            999 78877799999999999998644

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.78  E-value=5.2e-19  Score=153.98  Aligned_cols=175  Identities=14%  Similarity=0.082  Sum_probs=126.1

Q ss_pred             CEEEcccCccccccC----hhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceee--eCCCCCCCCCCCc
Q 045166            1 MFYLRNENTFLQRIP----RSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGI--IEEPRTSCGFSKL   74 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~~~l~~L   74 (305)
                      ++|+|++|.+++..|    ..+..+++|++|++++|.+++..|..++.+++|++|+|++|++.+.  ++.......+++|
T Consensus       120 ~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L  199 (310)
T 4glp_A          120 SSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAI  199 (310)
T ss_dssp             SSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCC
T ss_pred             CEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCC
Confidence            468999999997665    4556899999999999999997788999999999999999998753  3222222678999


Q ss_pred             cEEeCCCCcccccCCh---hhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCccccccccccccc
Q 045166           75 RIIDLSDNRFTGKLPS---NSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILA  151 (305)
Q Consensus        75 ~~L~Ls~N~l~g~lp~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  151 (305)
                      ++|++++|+++ .+|.   ..+..+++|++|++++|......+       ..+..                 ...+++|+
T Consensus       200 ~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p-------~~~~~-----------------~~~~~~L~  254 (310)
T 4glp_A          200 QNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVN-------PSAPR-----------------CMWSSALN  254 (310)
T ss_dssp             CSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCC-------SCCSS-----------------CCCCTTCC
T ss_pred             CEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccch-------hhHHh-----------------ccCcCcCC
Confidence            99999999997 4543   246788999999999975433211       11100                 00135677


Q ss_pred             EEEccCCccccccchhhc-CCCCceeee----cCCccccCCCCCCEEeccCCccee
Q 045166          152 GIILSNNRFDGAIPASIA-NLKGLQFSG----RIPQQLAELTFLAFFNVSDNYLTG  202 (305)
Q Consensus       152 ~LdLs~N~l~g~~p~~~~-~L~~L~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g  202 (305)
                      .|+|++|+|+ .+|..+. +|+.|.+++    .+|. +..+++|+.|++++|+++.
T Consensus       255 ~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          255 SLNLSFAGLE-QVPKGLPAKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CEECCSSCCC-SCCSCCCSCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred             EEECCCCCCC-chhhhhcCCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCC
Confidence            7777777777 5665543 344444332    2233 5778999999999999873

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.77  E-value=4.1e-18  Score=156.08  Aligned_cols=95  Identities=14%  Similarity=0.192  Sum_probs=71.7

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|++++|++++ +|  ++.+++|++|++++|.+++ +|  ++.+++|++|++++|++++ +|  +  +.+++|++|+++
T Consensus        67 ~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~--~~l~~L~~L~l~  135 (457)
T 3bz5_A           67 TKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--V--SQNPLLTYLNCA  135 (457)
T ss_dssp             SEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--C--TTCTTCCEEECT
T ss_pred             CEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--C--CCCCcCCEEECC
Confidence            478888888885 34  7888888888888888887 44  7788888888888888876 43  5  678888888888


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYL  110 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~  110 (305)
                      +|++++ ++   ++.+++|+.|++++|..+
T Consensus       136 ~N~l~~-l~---l~~l~~L~~L~l~~n~~~  161 (457)
T 3bz5_A          136 RNTLTE-ID---VSHNTQLTELDCHLNKKI  161 (457)
T ss_dssp             TSCCSC-CC---CTTCTTCCEEECTTCSCC
T ss_pred             CCccce-ec---cccCCcCCEEECCCCCcc
Confidence            888874 44   566777777777765433

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.77  E-value=4.7e-19  Score=154.74  Aligned_cols=202  Identities=17%  Similarity=0.105  Sum_probs=144.8

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD   81 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~   81 (305)
                      .++++.+.+...++..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+  +  ..+++|++|++++
T Consensus        14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~--~~l~~L~~L~Ls~   89 (317)
T 3o53_A           14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--L--ESLSTLRTLDLNN   89 (317)
T ss_dssp             EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--E--TTCTTCCEEECCS
T ss_pred             EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--h--hhcCCCCEEECcC
Confidence            35667777776666666778899999999999999777899999999999999999998665  6  8899999999999


Q ss_pred             CcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccC---cccccccccccccEEEccCC
Q 045166           82 NRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKG---RVMTYNKIPNILAGIILSNN  158 (305)
Q Consensus        82 N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~L~~LdLs~N  158 (305)
                      |+++ .+|     ..++|+.|++++|.......   ..++      .+..+.+..+.   ........+++|+.|||++|
T Consensus        90 n~l~-~l~-----~~~~L~~L~l~~n~l~~~~~---~~~~------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N  154 (317)
T 3o53_A           90 NYVQ-ELL-----VGPSIETLHAANNNISRVSC---SRGQ------GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN  154 (317)
T ss_dssp             SEEE-EEE-----ECTTCCEEECCSSCCSEEEE---CCCS------SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS
T ss_pred             Cccc-ccc-----CCCCcCEEECCCCccCCcCc---cccC------CCCEEECCCCCCCCccchhhhccCCCCEEECCCC
Confidence            9998 454     23789999998865433211   1111      12222333332   22334445788999999999


Q ss_pred             ccccccchhhc-CCCCce---eee----cCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCCC
Q 045166          159 RFDGAIPASIA-NLKGLQ---FSG----RIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSG  223 (305)
Q Consensus       159 ~l~g~~p~~~~-~L~~L~---l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp~  223 (305)
                      ++++..|..+. .+++|+   +++    .+|. ...+++|++|++++|++++..+....+..+..+++++|..
T Consensus       155 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l  226 (317)
T 3o53_A          155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL  226 (317)
T ss_dssp             CCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCC
T ss_pred             CCCcccHHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcc
Confidence            99977776663 455554   332    1222 3358899999999999997666555567777788888854

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=1.1e-18  Score=154.46  Aligned_cols=191  Identities=13%  Similarity=0.069  Sum_probs=126.0

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCC-CCCCCCCCCccE-EeC
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEE-PRTSCGFSKLRI-IDL   79 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~~~l~~L~~-L~L   79 (305)
                      +++.++|+++ .+|..+  .+++++|+|++|+|+...+..|.++++|++|+|++|++.+.+|. .|  .++++++. +++
T Consensus        13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f--~~L~~l~~~l~~   87 (350)
T 4ay9_X           13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF--SNLPKLHEIRIE   87 (350)
T ss_dssp             EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSB--CSCTTCCEEEEE
T ss_pred             EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHh--hcchhhhhhhcc
Confidence            5677888888 677765  46889999999999874344688899999999999988776665 34  67777664 666


Q ss_pred             CCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccc----cCcccc-cccccccccEEE
Q 045166           80 SDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNS----KGRVMT-YNKIPNILAGII  154 (305)
Q Consensus        80 s~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~L~~Ld  154 (305)
                      +.|+++ .+|.+.|..+++|+.|++++|...........   .   ........+..    ..+... +......++.|+
T Consensus        88 ~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~---~---~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~  160 (350)
T 4ay9_X           88 KANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKI---H---SLQKVLLDIQDNINIHTIERNSFVGLSFESVILW  160 (350)
T ss_dssp             EETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTC---C---BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEE
T ss_pred             cCCccc-ccCchhhhhccccccccccccccccCCchhhc---c---cchhhhhhhccccccccccccchhhcchhhhhhc
Confidence            778888 66656688899999999888644321111000   0   00011111111    111111 222234688999


Q ss_pred             ccCCccccccchhhcCCCCce--------eeecCCc-cccCCCCCCEEeccCCcceecCCC
Q 045166          155 LSNNRFDGAIPASIANLKGLQ--------FSGRIPQ-QLAELTFLAFFNVSDNYLTGPIPQ  206 (305)
Q Consensus       155 Ls~N~l~g~~p~~~~~L~~L~--------l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~ip~  206 (305)
                      |++|+|+ .+|.......+|+        ..+.+|. .|..+++|++||+++|+|+ .+|.
T Consensus       161 L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~  219 (350)
T 4ay9_X          161 LNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS  219 (350)
T ss_dssp             CCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCS
T ss_pred             ccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccCh
Confidence            9999999 6666655444444        2335664 6789999999999999998 4454

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.76  E-value=4.3e-18  Score=148.06  Aligned_cols=159  Identities=17%  Similarity=0.216  Sum_probs=123.5

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|++++|++++. +. +..+++|++|++++|.+++ +| .+..+++|++|++++|.+++. +. +  ..+++|++|+++
T Consensus        66 ~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~~-~~-l--~~l~~L~~L~l~  137 (308)
T 1h6u_A           66 IGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITDV-TP-L--AGLSNLQVLYLD  137 (308)
T ss_dssp             CEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCCC-GG-G--TTCTTCCEEECC
T ss_pred             CEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCCc-hh-h--cCCCCCCEEECC
Confidence            5799999999854 44 9999999999999999987 55 689999999999999999874 43 6  889999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF  160 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l  160 (305)
                      +|.++ .++.  +..+++|+.|++++|.......                             ...+++|+.|++++|++
T Consensus       138 ~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~-----------------------------l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          138 LNQIT-NISP--LAGLTNLQYLSIGNAQVSDLTP-----------------------------LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             SSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG-----------------------------GTTCTTCCEEECCSSCC
T ss_pred             CCccC-cCcc--ccCCCCccEEEccCCcCCCChh-----------------------------hcCCCCCCEEECCCCcc
Confidence            99999 5663  8899999999999864322100                             12366777888888877


Q ss_pred             ccccchhhcCCCCce---eee----cCCccccCCCCCCEEeccCCccee
Q 045166          161 DGAIPASIANLKGLQ---FSG----RIPQQLAELTFLAFFNVSDNYLTG  202 (305)
Q Consensus       161 ~g~~p~~~~~L~~L~---l~g----~ip~~l~~l~~L~~L~Ls~N~l~g  202 (305)
                      ++ +|. +..+++|+   +++    .++ .+..+++|++|++++|++++
T Consensus       186 ~~-~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          186 SD-ISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CC-CGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEEC
T ss_pred             Cc-Chh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeec
Confidence            74 333 55555554   221    233 37889999999999999986

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.76  E-value=1.1e-18  Score=161.06  Aligned_cols=190  Identities=18%  Similarity=0.122  Sum_probs=141.2

Q ss_pred             ccChhhhcCC----CCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccC
Q 045166           13 RIPRSLINCS----KLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKL   88 (305)
Q Consensus        13 ~~p~~~~~l~----~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~l   88 (305)
                      .+|..+..+.    +|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|  +  ..+++|++||+++|.++ .+
T Consensus        21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l--~~l~~L~~L~Ls~N~l~-~l   95 (487)
T 3oja_A           21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--L--ESLSTLRTLDLNNNYVQ-EL   95 (487)
T ss_dssp             THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--C--TTCTTCCEEECCSSEEE-EE
T ss_pred             hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--c--ccCCCCCEEEecCCcCC-CC
Confidence            3455665554    89999999999999778899999999999999999998776  6  88999999999999999 45


Q ss_pred             ChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccC---cccccccccccccEEEccCCccccccc
Q 045166           89 PSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKG---RVMTYNKIPNILAGIILSNNRFDGAIP  165 (305)
Q Consensus        89 p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~L~~LdLs~N~l~g~~p  165 (305)
                      |.     .++|+.|++++|.......   ..++      .+..+.+..+.   .....+..+++|+.|||++|.+++.+|
T Consensus        96 ~~-----~~~L~~L~L~~N~l~~~~~---~~l~------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (487)
T 3oja_A           96 LV-----GPSIETLHAANNNISRVSC---SRGQ------GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF  161 (487)
T ss_dssp             EE-----CTTCCEEECCSSCCCCEEE---CCCS------SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred             CC-----CCCcCEEECcCCcCCCCCc---cccC------CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh
Confidence            52     3789999999865433211   1111      12223333333   333344558899999999999998888


Q ss_pred             hhhc-CCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCCC
Q 045166          166 ASIA-NLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSG  223 (305)
Q Consensus       166 ~~~~-~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp~  223 (305)
                      ..+. .+++|+        +++. | ....+++|++|+|++|++++.+|....+..+..+++++|..
T Consensus       162 ~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l  226 (487)
T 3oja_A          162 AELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL  226 (487)
T ss_dssp             GGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCC
T ss_pred             HHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcC
Confidence            8775 566665        3333 2 23468999999999999998777655667788888888854

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.76  E-value=4.6e-18  Score=156.18  Aligned_cols=202  Identities=20%  Similarity=0.199  Sum_probs=141.9

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|++++|.+++ + ..+..+++|++|++++|.+++..|  ++.+++|++|++++|.+++. + .+  ..+++|+.|+++
T Consensus       180 ~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~l--~~l~~L~~L~l~  251 (466)
T 1o6v_A          180 ERLDISSNKVSD-I-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-G-TL--ASLTNLTDLDLA  251 (466)
T ss_dssp             CEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-G-GG--GGCTTCSEEECC
T ss_pred             CEEECcCCcCCC-C-hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-h-hh--hcCCCCCEEECC
Confidence            478999999874 3 358889999999999999987544  77788999999999988763 3 34  678889999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccc-cccccccccEEEccCCc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMT-YNKIPNILAGIILSNNR  159 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~LdLs~N~  159 (305)
                      +|.+++ ++.  +..+++|+.|++++|.......  ....+      .+..+++..+.+... ....+++|+.|+|++|+
T Consensus       252 ~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~------~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~  320 (466)
T 1o6v_A          252 NNQISN-LAP--LSGLTKLTELKLGANQISNISP--LAGLT------ALTNLELNENQLEDISPISNLKNLTYLTLYFNN  320 (466)
T ss_dssp             SSCCCC-CGG--GTTCTTCSEEECCSSCCCCCGG--GTTCT------TCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC
T ss_pred             CCcccc-chh--hhcCCCCCEEECCCCccCcccc--ccCCC------ccCeEEcCCCcccCchhhcCCCCCCEEECcCCc
Confidence            998884 442  7788888888888864433211  11110      122222222222211 13457889999999999


Q ss_pred             cccccchhhcCCCCce---eee----cCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCCCCC
Q 045166          160 FDGAIPASIANLKGLQ---FSG----RIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLC  225 (305)
Q Consensus       160 l~g~~p~~~~~L~~L~---l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp~lc  225 (305)
                      +++..|  +..+++|+   +.+    .+ ..+..+++|++|++++|++++.+| ...+..+..+++++|+...
T Consensus       321 l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          321 ISDISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CSCCGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred             CCCchh--hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence            997665  56666665   322    12 468889999999999999998887 5667778888888887554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=4.6e-18  Score=146.69  Aligned_cols=159  Identities=18%  Similarity=0.219  Sum_probs=110.1

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|++++|.++. +| .+..+++|++|++++|++++ ++. +..+++|++|++++|.+++ +|. +  ..+++|++|+++
T Consensus        49 ~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l--~~l~~L~~L~L~  120 (291)
T 1h6t_A           49 DQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LSS-L--KDLKKLKSLSLE  120 (291)
T ss_dssp             CEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GGG-G--TTCTTCCEEECT
T ss_pred             cEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Chh-h--ccCCCCCEEECC
Confidence            468889998874 44 48889999999999999987 444 8889999999999999876 333 5  788899999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF  160 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l  160 (305)
                      +|+++ .++ . +..+++|+.|++++|.....                             .....+++|+.|++++|++
T Consensus       121 ~n~i~-~~~-~-l~~l~~L~~L~l~~n~l~~~-----------------------------~~l~~l~~L~~L~L~~N~l  168 (291)
T 1h6t_A          121 HNGIS-DIN-G-LVHLPQLESLYLGNNKITDI-----------------------------TVLSRLTKLDTLSLEDNQI  168 (291)
T ss_dssp             TSCCC-CCG-G-GGGCTTCCEEECCSSCCCCC-----------------------------GGGGGCTTCSEEECCSSCC
T ss_pred             CCcCC-CCh-h-hcCCCCCCEEEccCCcCCcc-----------------------------hhhccCCCCCEEEccCCcc
Confidence            99998 454 3 78888899998887543221                             1122367788888888888


Q ss_pred             ccccchhhcCCCCce---eee----cCCccccCCCCCCEEeccCCccee
Q 045166          161 DGAIPASIANLKGLQ---FSG----RIPQQLAELTFLAFFNVSDNYLTG  202 (305)
Q Consensus       161 ~g~~p~~~~~L~~L~---l~g----~ip~~l~~l~~L~~L~Ls~N~l~g  202 (305)
                      ++..|  +..+++|+   +++    .+| .+..+++|+.|++++|+++.
T Consensus       169 ~~~~~--l~~l~~L~~L~L~~N~i~~l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          169 SDIVP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCCGG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             ccchh--hcCCCccCEEECCCCcCCCCh-hhccCCCCCEEECcCCcccC
Confidence            84333  44444443   111    122 25555566666666665553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.74  E-value=9e-18  Score=140.56  Aligned_cols=163  Identities=17%  Similarity=0.177  Sum_probs=119.6

Q ss_pred             CEEEcccCc-cccccChhhhcCCCCCEEeccC-cccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCcc---
Q 045166            1 MFYLRNENT-FLQRIPRSLINCSKLEFLGLGI-NQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLR---   75 (305)
Q Consensus         1 ~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~---   75 (305)
                      ++|++++|+ +++..+..|.++++|++|++++ |.+++..+..|..+++|++|++++|.+++ +|. +  ..+++|+   
T Consensus        58 ~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~--~~l~~L~~L~  133 (239)
T 2xwt_C           58 SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-L--TKVYSTDIFF  133 (239)
T ss_dssp             CEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-C--TTCCBCCSEE
T ss_pred             cEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-c--cccccccccc
Confidence            579999997 8866677899999999999999 99998666788999999999999999987 676 6  7888888   


Q ss_pred             EEeCCCC-cccccCChhhhhCcccch-hccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEE
Q 045166           76 IIDLSDN-RFTGKLPSNSFLCWNAMK-IVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGI  153 (305)
Q Consensus        76 ~L~Ls~N-~l~g~lp~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  153 (305)
                      +|++++| .++ .+|...|..+++|+ .|++++|....        ++...                   +. .++|+.|
T Consensus       134 ~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~~--------i~~~~-------------------~~-~~~L~~L  184 (239)
T 2xwt_C          134 ILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFTS--------VQGYA-------------------FN-GTKLDAV  184 (239)
T ss_dssp             EEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCCE--------ECTTT-------------------TT-TCEEEEE
T ss_pred             EEECCCCcchh-hcCcccccchhcceeEEEcCCCCCcc--------cCHhh-------------------cC-CCCCCEE
Confidence            9999999 998 67777799999999 99998864321        11111                   11 1346666


Q ss_pred             EccCCc-cccccchhhcCC-CCce---eee----cCCccccCCCCCCEEeccCC
Q 045166          154 ILSNNR-FDGAIPASIANL-KGLQ---FSG----RIPQQLAELTFLAFFNVSDN  198 (305)
Q Consensus       154 dLs~N~-l~g~~p~~~~~L-~~L~---l~g----~ip~~l~~l~~L~~L~Ls~N  198 (305)
                      +|++|+ +++..+..+..+ ++|+   +++    .+|..  .+++|+.|+++++
T Consensus       185 ~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             ECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred             EcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence            666663 553334444444 4443   211    34443  5778999998876

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.73  E-value=3.4e-17  Score=149.85  Aligned_cols=74  Identities=19%  Similarity=0.295  Sum_probs=34.7

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD   81 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~   81 (305)
                      +|++++|++++ +| +|+++++|++|++++|++++ +|..+   .+|++|++++|++++ +| .+  +++++|++|++++
T Consensus       135 ~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~--~~l~~L~~L~l~~  204 (454)
T 1jl5_A          135 YLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-EL--QNLPFLTAIYADN  204 (454)
T ss_dssp             EEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CC--TTCTTCCEEECCS
T ss_pred             EEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cc--cCCCCCCEEECCC
Confidence            45555555553 44 35555555555555555554 34322   244444444444443 33 23  3444444444444


Q ss_pred             Cccc
Q 045166           82 NRFT   85 (305)
Q Consensus        82 N~l~   85 (305)
                      |+++
T Consensus       205 N~l~  208 (454)
T 1jl5_A          205 NSLK  208 (454)
T ss_dssp             SCCS
T ss_pred             CcCC
Confidence            4443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=3.8e-18  Score=145.08  Aligned_cols=92  Identities=13%  Similarity=0.108  Sum_probs=53.8

Q ss_pred             EcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCc
Q 045166            4 LRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNR   83 (305)
Q Consensus         4 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~   83 (305)
                      ++++|.+++ ++ .+..+++|++|++++|.++. +| .+..+++|++|++++|++++..+  +  ..+++|++|++++|+
T Consensus        25 ~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l--~~l~~L~~L~L~~N~   96 (263)
T 1xeu_A           25 NLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--L--KDLTKLEELSVNRNR   96 (263)
T ss_dssp             HHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--G--TTCSSCCEEECCSSC
T ss_pred             HhcCCCccc-cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--h--ccCCCCCEEECCCCc
Confidence            455566553 22 45666666666666666654 44 45666666666666666665332  4  566666666666666


Q ss_pred             ccccCChhhhhCcccchhccCccc
Q 045166           84 FTGKLPSNSFLCWNAMKIVNTSAL  107 (305)
Q Consensus        84 l~g~lp~~~~~~l~~L~~L~l~~~  107 (305)
                      ++ .+|.  +.. ++|+.|++++|
T Consensus        97 l~-~l~~--~~~-~~L~~L~L~~N  116 (263)
T 1xeu_A           97 LK-NLNG--IPS-ACLSRLFLDNN  116 (263)
T ss_dssp             CS-CCTT--CCC-SSCCEEECCSS
T ss_pred             cC-CcCc--ccc-CcccEEEccCC
Confidence            66 4543  222 56666666654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.73  E-value=1.8e-17  Score=155.11  Aligned_cols=175  Identities=18%  Similarity=0.213  Sum_probs=128.4

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|+|++|++++ +|..+  +++|++|+|++|.|+. +|   ..+++|++|++++|++++ +|. +  .+  +|++|+++
T Consensus        62 ~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l--~~--~L~~L~Ls  128 (571)
T 3cvr_A           62 SELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-L--PA--SLKHLDVD  128 (571)
T ss_dssp             SEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-C--CT--TCCEEECC
T ss_pred             cEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-h--hc--CCCEEECC
Confidence            479999999986 77766  3889999999999995 88   567999999999999998 777 6  44  89999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF  160 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l  160 (305)
                      +|++++ +|.    .+++|+.|++++|....        +|...  ..+..+.+..+.+.. +....++|+.|||++|+|
T Consensus       129 ~N~l~~-lp~----~l~~L~~L~Ls~N~l~~--------lp~~l--~~L~~L~Ls~N~L~~-lp~l~~~L~~L~Ls~N~L  192 (571)
T 3cvr_A          129 NNQLTM-LPE----LPALLEYINADNNQLTM--------LPELP--TSLEVLSVRNNQLTF-LPELPESLEALDVSTNLL  192 (571)
T ss_dssp             SSCCSC-CCC----CCTTCCEEECCSSCCSC--------CCCCC--TTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCC
T ss_pred             CCcCCC-CCC----cCccccEEeCCCCccCc--------CCCcC--CCcCEEECCCCCCCC-cchhhCCCCEEECcCCCC
Confidence            999994 885    57899999999865432        12111  112223333333222 111227899999999999


Q ss_pred             ccccchhhcC-C-------CCceeee----cCCccccCCCCCCEEeccCCcceecCCC
Q 045166          161 DGAIPASIAN-L-------KGLQFSG----RIPQQLAELTFLAFFNVSDNYLTGPIPQ  206 (305)
Q Consensus       161 ~g~~p~~~~~-L-------~~L~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~ip~  206 (305)
                      + .+|. +.. |       ..|.+++    .+|..+..+++|++|+|++|++++.+|.
T Consensus       193 ~-~lp~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          193 E-SLPA-VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             S-SCCC-CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred             C-chhh-HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence            9 7777 543 3       3333333    6888888899999999999999988775

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=1.8e-17  Score=156.40  Aligned_cols=160  Identities=18%  Similarity=0.220  Sum_probs=124.0

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      +.|++++|.+. .+| .+..+++|+.|+|++|.+++ +|. +..+++|+.|+|++|.+.+ +| .+  ..+++|+.|+|+
T Consensus        46 ~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l--~~l~~L~~L~Ls  117 (605)
T 1m9s_A           46 DQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIKD-LS-SL--KDLKKLKSLSLE  117 (605)
T ss_dssp             CCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CT-TS--TTCTTCCEEECT
T ss_pred             CEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCCCC-Ch-hh--ccCCCCCEEEec
Confidence            45789999987 455 58999999999999999998 444 8899999999999999986 44 56  789999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF  160 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l  160 (305)
                      +|.++ .++ . +..+++|+.|++++|.....                             .....+++|+.|+|++|+|
T Consensus       118 ~N~l~-~l~-~-l~~l~~L~~L~Ls~N~l~~l-----------------------------~~l~~l~~L~~L~Ls~N~l  165 (605)
T 1m9s_A          118 HNGIS-DIN-G-LVHLPQLESLYLGNNKITDI-----------------------------TVLSRLTKLDTLSLEDNQI  165 (605)
T ss_dssp             TSCCC-CCG-G-GGGCTTCSEEECCSSCCCCC-----------------------------GGGGSCTTCSEEECCSSCC
T ss_pred             CCCCC-CCc-c-ccCCCccCEEECCCCccCCc-----------------------------hhhcccCCCCEEECcCCcC
Confidence            99998 555 3 88899999999988643221                             1122367888889999988


Q ss_pred             ccccchhhcCCCCce---eee----cCCccccCCCCCCEEeccCCcceec
Q 045166          161 DGAIPASIANLKGLQ---FSG----RIPQQLAELTFLAFFNVSDNYLTGP  203 (305)
Q Consensus       161 ~g~~p~~~~~L~~L~---l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~  203 (305)
                      ++..|  +..+++|+   +++    .+ +.+..+++|+.|+|++|++++.
T Consensus       166 ~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          166 SDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEEEECC
T ss_pred             CCchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCcCcCC
Confidence            86555  66666665   222    23 3578899999999999999864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.72  E-value=5.5e-17  Score=131.40  Aligned_cols=130  Identities=19%  Similarity=0.233  Sum_probs=101.4

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      +++++++|+++ .+|..+.  ++|++|++++|+++. +|..|..+++|++|+|++|.+++..+..|  .++++|++|+|+
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f--~~l~~L~~L~Ls   86 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSF--SNMTQLLTLILS   86 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHhHc--cCCCCCCEEECC
Confidence            36888999988 6776553  689999999999985 88888999999999999999988776777  889999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF  160 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l  160 (305)
                      +|+++ .+|...|..                                                   +++|+.|+|++|+|
T Consensus        87 ~N~l~-~i~~~~f~~---------------------------------------------------l~~L~~L~L~~N~l  114 (193)
T 2wfh_A           87 YNRLR-CIPPRTFDG---------------------------------------------------LKSLRLLSLHGNDI  114 (193)
T ss_dssp             SSCCC-BCCTTTTTT---------------------------------------------------CTTCCEEECCSSCC
T ss_pred             CCccC-EeCHHHhCC---------------------------------------------------CCCCCEEECCCCCC
Confidence            99998 455432332                                                   55678888888888


Q ss_pred             ccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCcceecC
Q 045166          161 DGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPI  204 (305)
Q Consensus       161 ~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i  204 (305)
                      + .+|.               ..|..+++|++|++++|++.+..
T Consensus       115 ~-~~~~---------------~~~~~l~~L~~L~L~~N~~~C~c  142 (193)
T 2wfh_A          115 S-VVPE---------------GAFNDLSALSHLAIGANPLYCDC  142 (193)
T ss_dssp             C-BCCT---------------TTTTTCTTCCEEECCSSCEECSG
T ss_pred             C-eeCh---------------hhhhcCccccEEEeCCCCeecCC
Confidence            8 3332               24667888999999999887543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.72  E-value=2.9e-17  Score=144.92  Aligned_cols=180  Identities=17%  Similarity=0.204  Sum_probs=126.3

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|++++|.+.+..+  +..+++|++|++++|.+++ ++. +..+++|++|++++|.+++..+  +  ..+++|++|+++
T Consensus       158 ~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~--~~~~~L~~L~l~  229 (347)
T 4fmz_A          158 NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDITP--V--ANMTRLNSLKIG  229 (347)
T ss_dssp             CEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG--G--GGCTTCCEEECC
T ss_pred             cEEEecCCCcCCchh--hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCCCch--h--hcCCcCCEEEcc
Confidence            468888988875443  7888999999999998887 444 7788888888888888876543  4  678888888888


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCccc-ccccccccccEEEccCCc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVM-TYNKIPNILAGIILSNNR  159 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~LdLs~N~  159 (305)
                      +|.++ .++.  +..+++|+.|++++|.......  ....+      .+..+.+..+.+.. .....+++|+.|++++|+
T Consensus       230 ~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~------~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~  298 (347)
T 4fmz_A          230 NNKIT-DLSP--LANLSQLTWLEIGTNQISDINA--VKDLT------KLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQ  298 (347)
T ss_dssp             SSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCT------TCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred             CCccC-CCcc--hhcCCCCCEEECCCCccCCChh--HhcCC------CcCEEEccCCccCCChhhcCCCCCCEEECcCCc
Confidence            88888 5553  7788888888888764332110  11111      12222222222221 223457899999999999


Q ss_pred             cccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcce
Q 045166          160 FDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLT  201 (305)
Q Consensus       160 l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~  201 (305)
                      +++..|..+..+++|+        +++..|  +..+++|++|++++|+++
T Consensus       299 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          299 LGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            9988888888888776        344444  788999999999999986

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=4.9e-17  Score=138.14  Aligned_cols=144  Identities=16%  Similarity=0.190  Sum_probs=118.9

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|++++|+++ .+| .+..+++|++|++++|++++ +|. +..+++|++|++++|++++ +|...   . ++|++|+++
T Consensus        44 ~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l~~~~---~-~~L~~L~L~  114 (263)
T 1xeu_A           44 QNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-LNGIP---S-ACLSRLFLD  114 (263)
T ss_dssp             SEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-CTTCC---C-SSCCEEECC
T ss_pred             cEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-cCccc---c-CcccEEEcc
Confidence            57999999998 566 78999999999999999998 555 9999999999999999987 55433   3 899999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF  160 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l  160 (305)
                      +|+++ .++ . +..+++|+.|++++|...+.                             .....+++|+.|+|++|++
T Consensus       115 ~N~l~-~~~-~-l~~l~~L~~L~Ls~N~i~~~-----------------------------~~l~~l~~L~~L~L~~N~i  162 (263)
T 1xeu_A          115 NNELR-DTD-S-LIHLKNLEILSIRNNKLKSI-----------------------------VMLGFLSKLEVLDLHGNEI  162 (263)
T ss_dssp             SSCCS-BSG-G-GTTCTTCCEEECTTSCCCBC-----------------------------GGGGGCTTCCEEECTTSCC
T ss_pred             CCccC-CCh-h-hcCcccccEEECCCCcCCCC-----------------------------hHHccCCCCCEEECCCCcC
Confidence            99999 565 3 88999999999998643221                             0122378899999999999


Q ss_pred             ccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCcceec
Q 045166          161 DGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGP  203 (305)
Q Consensus       161 ~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~  203 (305)
                      ++.                  ..+..+++|+.|++++|++++.
T Consensus       163 ~~~------------------~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          163 TNT------------------GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CBC------------------TTSTTCCCCCEEEEEEEEEECC
T ss_pred             cch------------------HHhccCCCCCEEeCCCCcccCC
Confidence            843                  2467789999999999999865

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.71  E-value=9.1e-18  Score=132.82  Aligned_cols=142  Identities=16%  Similarity=0.083  Sum_probs=107.0

Q ss_pred             cCCCCCEEeccCcccc-cCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCccc
Q 045166           20 NCSKLEFLGLGINQIS-DTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNA   98 (305)
Q Consensus        20 ~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~   98 (305)
                      ..++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+  ..+++|++|++++|.+++.+|. .+..+++
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~--~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~   96 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNL--PKLPKLKKLELSENRIFGGLDM-LAEKLPN   96 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSC--CCCSSCCEEEEESCCCCSCCCH-HHHHCTT
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhh--ccCCCCCEEECcCCcCchHHHH-HHhhCCC
Confidence            4578999999999998 56888888999999999999999875  556  7899999999999999965774 4777899


Q ss_pred             chhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccccccchhhcCCCCceeee
Q 045166           99 MKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSG  178 (305)
Q Consensus        99 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~g  178 (305)
                      |+.|++++|.......                          ......+++|+.|++++|.+++. |...          
T Consensus        97 L~~L~Ls~N~l~~~~~--------------------------~~~l~~l~~L~~L~l~~N~l~~~-~~~~----------  139 (168)
T 2ell_A           97 LTHLNLSGNKLKDIST--------------------------LEPLKKLECLKSLDLFNCEVTNL-NDYR----------  139 (168)
T ss_dssp             CCEEECBSSSCCSSGG--------------------------GGGGSSCSCCCEEECCSSGGGTS-TTHH----------
T ss_pred             CCEEeccCCccCcchh--------------------------HHHHhcCCCCCEEEeeCCcCcch-HHHH----------
Confidence            9999988864322100                          01223377899999999999833 3200          


Q ss_pred             cCCccccCCCCCCEEeccCCcceecCCC
Q 045166          179 RIPQQLAELTFLAFFNVSDNYLTGPIPQ  206 (305)
Q Consensus       179 ~ip~~l~~l~~L~~L~Ls~N~l~g~ip~  206 (305)
                        ...+..+++|++|++++|.+. .+|.
T Consensus       140 --~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          140 --ESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             --HHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             --HHHHHhCccCcEecCCCCChh-hccc
Confidence              024678889999999999887 4443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.71  E-value=2.1e-17  Score=133.78  Aligned_cols=88  Identities=22%  Similarity=0.221  Sum_probs=79.7

Q ss_pred             CEEEcccCccccccCh-hhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166            1 MFYLRNENTFLQRIPR-SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L   79 (305)
                      ++|++++|++++..+. .|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..+  .++++|++|++
T Consensus        32 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L  109 (192)
T 1w8a_A           32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMF--LGLHQLKTLNL  109 (192)
T ss_dssp             SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSS--TTCTTCCEEEC
T ss_pred             CEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHh--cCCCCCCEEEC
Confidence            4799999999966664 48999999999999999999889999999999999999999999887778  89999999999


Q ss_pred             CCCcccccCCh
Q 045166           80 SDNRFTGKLPS   90 (305)
Q Consensus        80 s~N~l~g~lp~   90 (305)
                      ++|++++..|.
T Consensus       110 ~~N~l~~~~~~  120 (192)
T 1w8a_A          110 YDNQISCVMPG  120 (192)
T ss_dssp             CSSCCCEECTT
T ss_pred             CCCcCCeeCHH
Confidence            99999976664

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.71  E-value=6.2e-17  Score=148.63  Aligned_cols=207  Identities=17%  Similarity=0.174  Sum_probs=128.2

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      +.|++++|.+. .+| .+..+++|++|++++|.+++ +|. +..+++|++|++++|.+++..+  +  ..+++|++|+++
T Consensus        49 ~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~L~  120 (466)
T 1o6v_A           49 TTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIADITP--L--ANLTNLTGLTLF  120 (466)
T ss_dssp             CEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--G--TTCTTCCEEECC
T ss_pred             cEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCC-chh-hhccccCCEEECCCCccccChh--h--cCCCCCCEEECC
Confidence            46788888877 455 37788888888888888887 444 7888888888888888876544  5  778888888888


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCC--------------ccc-cccccccccccCccc-ccc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSN--------------VLG-TYDYSRTMNSKGRVM-TYN  144 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~--------------~~~-~~~~~~~~~~~~~~~-~~~  144 (305)
                      +|.++ .+|.  +..+++|++|++++|.......  .+.++.-              +.. ..+..+++..+.+.. ...
T Consensus       121 ~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l  195 (466)
T 1o6v_A          121 NNQIT-DIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL  195 (466)
T ss_dssp             SSCCC-CCGG--GTTCTTCSEEEEEEEEECCCGG--GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGG
T ss_pred             CCCCC-CChH--HcCCCCCCEEECCCCccCCChh--hccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhh
Confidence            88888 5553  7788888888888764332110  1110000              000 011112222222111 112


Q ss_pred             cccccccEEEccCCccccccchhhcCCCCce---eeec---CCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCcc
Q 045166          145 KIPNILAGIILSNNRFDGAIPASIANLKGLQ---FSGR---IPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSF  218 (305)
Q Consensus       145 ~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~---l~g~---ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~  218 (305)
                      ..+++|+.|++++|++++..|  ++.+++|+   +++.   -...+..+++|++|++++|++++..| ...+..+..+++
T Consensus       196 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l  272 (466)
T 1o6v_A          196 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKL  272 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEEC
T ss_pred             ccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEEC
Confidence            335677777777777775444  44444444   3321   11356778888888888888886555 445566777777


Q ss_pred             CCCCC
Q 045166          219 DGNSG  223 (305)
Q Consensus       219 ~gNp~  223 (305)
                      ++|..
T Consensus       273 ~~n~l  277 (466)
T 1o6v_A          273 GANQI  277 (466)
T ss_dssp             CSSCC
T ss_pred             CCCcc
Confidence            77743

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.71  E-value=3.9e-18  Score=156.11  Aligned_cols=179  Identities=16%  Similarity=0.092  Sum_probs=99.6

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCC-------------CEEEcccccceeeeCCCCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKL-------------NVLILRSNIFYGIIEEPRT   67 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L-------------~~L~L~~N~l~~~~p~~~~   67 (305)
                      ++|++++|.+ |.+|++++++++|++|++++|.++|.+|..++.+.+|             ++|++++|.+++ +|..  
T Consensus        14 ~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~--   89 (454)
T 1jl5_A           14 QEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL--   89 (454)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC--
T ss_pred             hhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC--
Confidence            4689999999 7999999999999999999999999999999988764             999999999886 4442  


Q ss_pred             CCCCCCccEEeCCCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCccccccccc
Q 045166           68 SCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIP  147 (305)
Q Consensus        68 ~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (305)
                         .++|++|++++|.+++ +|..    +++|+.|++++|...+-     +.++..+....+...  ...+++  ....+
T Consensus        90 ---~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~l-----~~~~~~L~~L~L~~n--~l~~lp--~~~~l  152 (454)
T 1jl5_A           90 ---PPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKAL-----SDLPPLLEYLGVSNN--QLEKLP--ELQNS  152 (454)
T ss_dssp             ---CTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSCC-----CSCCTTCCEEECCSS--CCSSCC--CCTTC
T ss_pred             ---cCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCcc-----cCCCCCCCEEECcCC--CCCCCc--ccCCC
Confidence               3678899999999984 7743    36788888877543321     112222221111111  111222  13345


Q ss_pred             ccccEEEccCCccccccchhhcCCCCceeee----cCCccccCCCCCCEEeccCCccee
Q 045166          148 NILAGIILSNNRFDGAIPASIANLKGLQFSG----RIPQQLAELTFLAFFNVSDNYLTG  202 (305)
Q Consensus       148 ~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g  202 (305)
                      ++|++|++++|+++ .+|..+.+|+.|.+++    .+| .+..+++|++|++++|++++
T Consensus       153 ~~L~~L~l~~N~l~-~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~  209 (454)
T 1jl5_A          153 SFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK  209 (454)
T ss_dssp             TTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS
T ss_pred             CCCCEEECCCCcCc-ccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc
Confidence            66777777777776 3565555555555322    244 35666666666666666654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.71  E-value=4.6e-17  Score=140.41  Aligned_cols=133  Identities=24%  Similarity=0.252  Sum_probs=107.5

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|++++|++++..|  +..+++|++|++++|.+++ +| .+..+++|++|++++|++++. + .+  ..+++|++|+++
T Consensus        71 ~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~-~-~l--~~l~~L~~L~l~  142 (291)
T 1h6t_A           71 TKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI-N-GL--VHLPQLESLYLG  142 (291)
T ss_dssp             CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC-G-GG--GGCTTCCEEECC
T ss_pred             CEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC-h-hh--cCCCCCCEEEcc
Confidence            579999999996544  9999999999999999987 55 489999999999999999874 3 45  789999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF  160 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l  160 (305)
                      +|+++ .++ . +..+++|+.|++++|.......                             ...+++|+.|++++|++
T Consensus       143 ~n~l~-~~~-~-l~~l~~L~~L~L~~N~l~~~~~-----------------------------l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          143 NNKIT-DIT-V-LSRLTKLDTLSLEDNQISDIVP-----------------------------LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             SSCCC-CCG-G-GGGCTTCSEEECCSSCCCCCGG-----------------------------GTTCTTCCEEECCSSCC
T ss_pred             CCcCC-cch-h-hccCCCCCEEEccCCccccchh-----------------------------hcCCCccCEEECCCCcC
Confidence            99999 554 3 8899999999999864322110                             22377899999999999


Q ss_pred             ccccchhhcCCCCce
Q 045166          161 DGAIPASIANLKGLQ  175 (305)
Q Consensus       161 ~g~~p~~~~~L~~L~  175 (305)
                      + .+|. +..+++|+
T Consensus       191 ~-~l~~-l~~l~~L~  203 (291)
T 1h6t_A          191 S-DLRA-LAGLKNLD  203 (291)
T ss_dssp             C-BCGG-GTTCTTCS
T ss_pred             C-CChh-hccCCCCC
Confidence            8 4554 66666665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.71  E-value=9.3e-17  Score=128.11  Aligned_cols=131  Identities=21%  Similarity=0.241  Sum_probs=96.8

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD   81 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~   81 (305)
                      .+++++|+++ .+|..+  .++|++|++++|++++..+..+..+++|++|++++|++++..+..+  ..+++|++|++++
T Consensus        11 ~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~   85 (177)
T 2o6r_A           11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF--DKLTKLTILYLHE   85 (177)
T ss_dssp             EEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECCS
T ss_pred             EEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHc--cCCCccCEEECCC
Confidence            5788888887 556443  3688888888888887555567788888888888888887555556  7788888888888


Q ss_pred             CcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccc
Q 045166           82 NRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFD  161 (305)
Q Consensus        82 N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~  161 (305)
                      |+++ .+|...+..                                                   +++|+.||+++|+++
T Consensus        86 N~l~-~~~~~~~~~---------------------------------------------------l~~L~~L~l~~N~l~  113 (177)
T 2o6r_A           86 NKLQ-SLPNGVFDK---------------------------------------------------LTQLKELALDTNQLK  113 (177)
T ss_dssp             SCCC-CCCTTTTTT---------------------------------------------------CTTCCEEECCSSCCS
T ss_pred             CCcc-ccCHHHhhC---------------------------------------------------CcccCEEECcCCcce
Confidence            8888 455432322                                                   556888888888888


Q ss_pred             cccchhhcCCCCceeeecCCccccCCCCCCEEeccCCcceecCC
Q 045166          162 GAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIP  205 (305)
Q Consensus       162 g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip  205 (305)
                       .+|.               ..+..+++|++|++++|++++..|
T Consensus       114 -~~~~---------------~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          114 -SVPD---------------GIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             -CCCT---------------TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             -EeCH---------------HHhcCCcccCEEEecCCCeeccCc
Confidence             3332               235678889999999999987766

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.70  E-value=2.6e-18  Score=150.90  Aligned_cols=189  Identities=17%  Similarity=0.105  Sum_probs=113.6

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccC-cchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDT-FPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L   79 (305)
                      ++|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+  +.+++|++|++
T Consensus        73 ~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l--~~~~~L~~L~L  149 (336)
T 2ast_B           73 IAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL--AKNSNLVRLNL  149 (336)
T ss_dssp             SEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH--TTCTTCSEEEC
T ss_pred             eEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHH--hcCCCCCEEEC
Confidence            3577888888766554 55688888888888888765 67777788888888888888877666666  67888888888


Q ss_pred             CCC-ccccc-CChhhhhCcccchhccCccccccccc--ccCCCCcCCCccccccccccccccC--cc----ccccccccc
Q 045166           80 SDN-RFTGK-LPSNSFLCWNAMKIVNTSALRYLQDV--LFPYGQVSSNVLGTYDYSRTMNSKG--RV----MTYNKIPNI  149 (305)
Q Consensus        80 s~N-~l~g~-lp~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~  149 (305)
                      ++| .+++. ++ ..+..+++|++|++++|..+...  .......+..     +..+.+..+.  +.    ......+++
T Consensus       150 ~~~~~l~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~-----L~~L~l~~~~~~~~~~~l~~~~~~~~~  223 (336)
T 2ast_B          150 SGCSGFSEFALQ-TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET-----ITQLNLSGYRKNLQKSDLSTLVRRCPN  223 (336)
T ss_dssp             TTCBSCCHHHHH-HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT-----CCEEECCSCGGGSCHHHHHHHHHHCTT
T ss_pred             CCCCCCCHHHHH-HHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC-----CCEEEeCCCcccCCHHHHHHHHhhCCC
Confidence            888 67643 44 33677888888888776222210  0000111101     1111222221  10    112223566


Q ss_pred             ccEEEccCCc-cccccchhhcCCCCce---eeec--C-Cc---cccCCCCCCEEeccCC
Q 045166          150 LAGIILSNNR-FDGAIPASIANLKGLQ---FSGR--I-PQ---QLAELTFLAFFNVSDN  198 (305)
Q Consensus       150 L~~LdLs~N~-l~g~~p~~~~~L~~L~---l~g~--i-p~---~l~~l~~L~~L~Ls~N  198 (305)
                      |+.|++++|. +++..+..+.++++|+   +++.  + +.   .+.++++|++|++++|
T Consensus       224 L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          224 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            7777777777 5656666666555555   3221  2 22   3566677777777766

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.69  E-value=1.5e-16  Score=150.40  Aligned_cols=52  Identities=23%  Similarity=0.241  Sum_probs=33.6

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEccccccee
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYG   60 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~   60 (305)
                      ++|+|++|+++ .+|.   .+++|++|+|++|++++ +|.   .+++|++|++++|.+++
T Consensus        64 ~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~  115 (622)
T 3g06_A           64 TTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH  115 (622)
T ss_dssp             SEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC
T ss_pred             cEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC
Confidence            35777777776 4554   46677777777777765 554   55666666666666654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.69  E-value=9.5e-19  Score=156.86  Aligned_cols=221  Identities=14%  Similarity=0.093  Sum_probs=147.7

Q ss_pred             CEEEcccCccccccC----hhhhcCCCCCEEeccCc---ccccCcchhh-------cCCCCCCEEEccccccee----ee
Q 045166            1 MFYLRNENTFLQRIP----RSLINCSKLEFLGLGIN---QISDTFPSWL-------GTLPKLNVLILRSNIFYG----II   62 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~L~~N---~l~~~~p~~~-------~~l~~L~~L~L~~N~l~~----~~   62 (305)
                      ++|+|++|.+++..+    ..+..+++|++|+|++|   ++++.+|..+       ..+++|++|+|++|.++.    .+
T Consensus        35 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l  114 (386)
T 2ca6_A           35 KEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL  114 (386)
T ss_dssp             CEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHH
T ss_pred             cEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHH
Confidence            479999999987644    44678999999999996   4555566655       688999999999999986    45


Q ss_pred             CCCCCCCCCCCccEEeCCCCcccccCChh---hhhCc---------ccchhccCcccccccccccCCCCcCCCccc-ccc
Q 045166           63 EEPRTSCGFSKLRIIDLSDNRFTGKLPSN---SFLCW---------NAMKIVNTSALRYLQDVLFPYGQVSSNVLG-TYD  129 (305)
Q Consensus        63 p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~---~~~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~~  129 (305)
                      |..+  ..+++|++|+|++|.+++..+..   .+..+         ++|++|++++|.........   +...+.. ..+
T Consensus       115 ~~~l--~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---l~~~l~~~~~L  189 (386)
T 2ca6_A          115 IDFL--SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE---WAKTFQSHRLL  189 (386)
T ss_dssp             HHHH--HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH---HHHHHHHCTTC
T ss_pred             HHHH--HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH---HHHHHHhCCCc
Confidence            6566  67889999999999997433322   13333         78999999886543111000   0000000 022


Q ss_pred             ccccccccCccc--------ccccccccccEEEccCCccc----cccchhhcCCCCce---ee-----ec----CCcccc
Q 045166          130 YSRTMNSKGRVM--------TYNKIPNILAGIILSNNRFD----GAIPASIANLKGLQ---FS-----GR----IPQQLA  185 (305)
Q Consensus       130 ~~~~~~~~~~~~--------~~~~~~~~L~~LdLs~N~l~----g~~p~~~~~L~~L~---l~-----g~----ip~~l~  185 (305)
                      ..+.+..+.+..        .....+++|+.|+|++|.++    +.+|..+..+++|+   ++     +.    +|..+.
T Consensus       190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~  269 (386)
T 2ca6_A          190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS  269 (386)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred             CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence            333344443331        13345788999999999996    57888887777776   32     22    456663


Q ss_pred             --CCCCCCEEeccCCccee----cCCCCC--CCCccCCCccCCCCCCCC
Q 045166          186 --ELTFLAFFNVSDNYLTG----PIPQGK--QFATFDNTSFDGNSGLCG  226 (305)
Q Consensus       186 --~l~~L~~L~Ls~N~l~g----~ip~~~--~~~~l~~~~~~gNp~lc~  226 (305)
                        .+++|++|+|++|++++    .+|...  .++++..+++++|+.-..
T Consensus       270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence              48999999999999987    466532  357777888888876543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=1.1e-17  Score=161.38  Aligned_cols=124  Identities=19%  Similarity=0.088  Sum_probs=91.1

Q ss_pred             ccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhh
Q 045166           13 RIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNS   92 (305)
Q Consensus        13 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~   92 (305)
                      ..|..+..+++|+.|+|++|.+.. +|..+..+++|++|+|++|.++ .+|..+  +.+++|++|||++|.|+ .+|.. 
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~--~~l~~L~~L~Ls~N~l~-~lp~~-  288 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEI--KNLSNLRVLDLSHNRLT-SLPAE-  288 (727)
T ss_dssp             -------CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGG--GGGTTCCEEECTTSCCS-SCCSS-
T ss_pred             cChhhhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhh--hCCCCCCEEeCcCCcCC-ccChh-
Confidence            447778888889999999998884 7877888888999999999888 678777  78888999999999988 88866 


Q ss_pred             hhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccccccchhhcC
Q 045166           93 FLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIAN  170 (305)
Q Consensus        93 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~  170 (305)
                      ++.+++|++|++++|.+.        .+|..                    +..+++|+.|+|++|.|++.+|..+..
T Consensus       289 ~~~l~~L~~L~L~~N~l~--------~lp~~--------------------~~~l~~L~~L~L~~N~l~~~~p~~~~~  338 (727)
T 4b8c_D          289 LGSCFQLKYFYFFDNMVT--------TLPWE--------------------FGNLCNLQFLGVEGNPLEKQFLKILTE  338 (727)
T ss_dssp             GGGGTTCSEEECCSSCCC--------CCCSS--------------------TTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred             hcCCCCCCEEECCCCCCC--------ccChh--------------------hhcCCCccEEeCCCCccCCCChHHHhh
Confidence            788888888888886321        12221                    123677888888888888777777654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.67  E-value=5.5e-17  Score=125.66  Aligned_cols=133  Identities=18%  Similarity=0.100  Sum_probs=93.4

Q ss_pred             CCCCCEEeccCcccc-cCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCcccc
Q 045166           21 CSKLEFLGLGINQIS-DTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAM   99 (305)
Q Consensus        21 l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L   99 (305)
                      .++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+  +.+++|++|++++|.+++.+|. .+..+++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~--~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L   90 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANL--PKLNKLKKLELSDNRVSGGLEV-LAEKCPNL   90 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTC--CCCTTCCEEECCSSCCCSCTHH-HHHHCTTC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhh--hcCCCCCEEECCCCcccchHHH-HhhhCCCC
Confidence            467899999999998 66888888899999999999998875  556  7889999999999999855664 46677788


Q ss_pred             hhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccccccchhhcCCCCceeeec
Q 045166          100 KIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSGR  179 (305)
Q Consensus       100 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~g~  179 (305)
                      ++|++++|......                          .......+++|+.|++++|.+++..+..            
T Consensus        91 ~~L~ls~N~i~~~~--------------------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~------------  132 (149)
T 2je0_A           91 THLNLSGNKIKDLS--------------------------TIEPLKKLENLKSLDLFNCEVTNLNDYR------------  132 (149)
T ss_dssp             CEEECTTSCCCSHH--------------------------HHGGGGGCTTCCEEECTTCGGGGSTTHH------------
T ss_pred             CEEECCCCcCCChH--------------------------HHHHHhhCCCCCEEeCcCCcccchHHHH------------
Confidence            88877775322100                          0011223677888888888887432200            


Q ss_pred             CCccccCCCCCCEEeccC
Q 045166          180 IPQQLAELTFLAFFNVSD  197 (305)
Q Consensus       180 ip~~l~~l~~L~~L~Ls~  197 (305)
                       +..+..+++|++||+++
T Consensus       133 -~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          133 -ENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             -HHHHHHCTTCCEETTBC
T ss_pred             -HHHHHHCCCcccccCCC
Confidence             02356677777777763

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.67  E-value=3.9e-18  Score=152.86  Aligned_cols=206  Identities=12%  Similarity=0.057  Sum_probs=132.9

Q ss_pred             ccChhhhcCCCCCEEeccCcccccCcch----hhcCCCCCCEEEccccc---ceeeeCCCCC-----CCCCCCccEEeCC
Q 045166           13 RIPRSLINCSKLEFLGLGINQISDTFPS----WLGTLPKLNVLILRSNI---FYGIIEEPRT-----SCGFSKLRIIDLS   80 (305)
Q Consensus        13 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~L~L~~N~---l~~~~p~~~~-----~~~l~~L~~L~Ls   80 (305)
                      .++..+..+++|++|+|++|.++...+.    .+..+++|++|+|++|.   +++.+|..+.     +..+++|++|+|+
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            5778889999999999999999876443    46689999999999964   4444443220     1478999999999


Q ss_pred             CCcccc----cCChhhhhCcccchhccCcccccccccccCCCCcCCCccc----------cccccccccccCccc-----
Q 045166           81 DNRFTG----KLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLG----------TYDYSRTMNSKGRVM-----  141 (305)
Q Consensus        81 ~N~l~g----~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~-----  141 (305)
                      +|.+.+    .+|.. +..+++|+.|++++|........   .++..+..          ..+..+.+..+.+..     
T Consensus       103 ~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~~~---~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  178 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQAGA---KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE  178 (386)
T ss_dssp             SCCCCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHHHHH---HHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred             CCcCCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHHHHH---HHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH
Confidence            999996    36644 78899999999999754211000   00000000          112233333333321     


Q ss_pred             --ccccccccccEEEccCCcccc-----ccchhhcCCCCce---ee---------ecCCccccCCCCCCEEeccCCccee
Q 045166          142 --TYNKIPNILAGIILSNNRFDG-----AIPASIANLKGLQ---FS---------GRIPQQLAELTFLAFFNVSDNYLTG  202 (305)
Q Consensus       142 --~~~~~~~~L~~LdLs~N~l~g-----~~p~~~~~L~~L~---l~---------g~ip~~l~~l~~L~~L~Ls~N~l~g  202 (305)
                        .....+++|+.|+|++|+++.     .+|..+..+++|+   ++         +.+|..+..+++|++|+|++|++++
T Consensus       179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~  258 (386)
T 2ca6_A          179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  258 (386)
T ss_dssp             HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence              112236678888888888872     3443666655555   22         3456777888888888888888876


Q ss_pred             c----CCCC---CCCCccCCCccCCCC
Q 045166          203 P----IPQG---KQFATFDNTSFDGNS  222 (305)
Q Consensus       203 ~----ip~~---~~~~~l~~~~~~gNp  222 (305)
                      .    +|..   ....++..+++++|.
T Consensus       259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~  285 (386)
T 2ca6_A          259 RGAAAVVDAFSKLENIGLQTLRLQYNE  285 (386)
T ss_dssp             HHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             hhHHHHHHHHhhccCCCeEEEECcCCc
Confidence            4    3332   225566666677764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=7.4e-17  Score=131.03  Aligned_cols=153  Identities=14%  Similarity=0.119  Sum_probs=119.4

Q ss_pred             hhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCcc
Q 045166           18 LINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWN   97 (305)
Q Consensus        18 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~   97 (305)
                      ...+++|+.|++++|.++. +| .+..+++|++|++++|.++.  +..+  ..+++|++|++++|.+++..|.. +..++
T Consensus        40 ~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~--~~~l--~~l~~L~~L~l~~n~l~~~~~~~-l~~l~  112 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHATN--YNPI--SGLSNLERLRIMGKDVTSDKIPN-LSGLT  112 (197)
T ss_dssp             HHHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSC--CGGG--TTCTTCCEEEEECTTCBGGGSCC-CTTCT
T ss_pred             hhhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCc--chhh--hcCCCCCEEEeECCccCcccChh-hcCCC
Confidence            4678899999999999985 77 68999999999999997764  3356  78999999999999999766755 88899


Q ss_pred             cchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCc-cccccchhhcCCCCcee
Q 045166           98 AMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNR-FDGAIPASIANLKGLQF  176 (305)
Q Consensus        98 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~-l~g~~p~~~~~L~~L~l  176 (305)
                      +|+.|++++|......                           ......+++|+.|++++|+ ++ .+|           
T Consensus       113 ~L~~L~Ls~n~i~~~~---------------------------~~~l~~l~~L~~L~L~~n~~i~-~~~-----------  153 (197)
T 4ezg_A          113 SLTLLDISHSAHDDSI---------------------------LTKINTLPKVNSIDLSYNGAIT-DIM-----------  153 (197)
T ss_dssp             TCCEEECCSSBCBGGG---------------------------HHHHTTCSSCCEEECCSCTBCC-CCG-----------
T ss_pred             CCCEEEecCCccCcHh---------------------------HHHHhhCCCCCEEEccCCCCcc-ccH-----------
Confidence            9999999886433211                           1122337889999999998 55 433           


Q ss_pred             eecCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCCC
Q 045166          177 SGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSG  223 (305)
Q Consensus       177 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp~  223 (305)
                            .+..+++|++|++++|++++ ++....+.++..+++.||+.
T Consensus       154 ------~l~~l~~L~~L~l~~n~i~~-~~~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          154 ------PLKTLPELKSLNIQFDGVHD-YRGIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             ------GGGGCSSCCEEECTTBCCCC-CTTGGGCSSCCEEEECBC--
T ss_pred             ------hhcCCCCCCEEECCCCCCcC-hHHhccCCCCCEEEeeCccc
Confidence                  36788999999999999986 44555677788888888863

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.66  E-value=3.1e-18  Score=152.28  Aligned_cols=105  Identities=11%  Similarity=0.046  Sum_probs=66.4

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEeccCcccccCcc----hhhcCCC-CCCEEEcccccceeeeCCCCCCCCC-----
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFP----SWLGTLP-KLNVLILRSNIFYGIIEEPRTSCGF-----   71 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p----~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~~~l-----   71 (305)
                      +++++.|.+++.+|..+...++|++|++++|.+++..+    +.+..++ +|++|+|++|.+++..+..+  +.+     
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l--~~~l~~~~   79 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL--VQILAAIP   79 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHH--HHHHHTSC
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHH--HHHHhccC
Confidence            56677777777777666666667777777777776544    5566666 67777777777765444433  332     


Q ss_pred             CCccEEeCCCCcccccCChh---hhhCc-ccchhccCcccc
Q 045166           72 SKLRIIDLSDNRFTGKLPSN---SFLCW-NAMKIVNTSALR  108 (305)
Q Consensus        72 ~~L~~L~Ls~N~l~g~lp~~---~~~~l-~~L~~L~l~~~~  108 (305)
                      ++|++|++++|.+++..+..   .+..+ ++|+.|++++|.
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  120 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND  120 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc
Confidence            66777777777776443332   12223 667777777654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.66  E-value=7.8e-16  Score=145.57  Aligned_cols=89  Identities=17%  Similarity=0.174  Sum_probs=68.9

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|++++|.++ .+|..+.  ++|++|++++|.++. +|.   .+++|++|+|++|++++ +|.     .+++|++|+++
T Consensus        43 ~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~-----~l~~L~~L~Ls  109 (622)
T 3g06_A           43 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV-----LPPGLLELSIF  109 (622)
T ss_dssp             CEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC-----CCTTCCEEEEC
T ss_pred             cEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC-----CCCCCCEEECc
Confidence            47899999998 7787665  899999999999986 776   67899999999999985 554     35778888888


Q ss_pred             CCcccccCChhhhhCcccchhccCccc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSAL  107 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~  107 (305)
                      +|+++ .+|.    .+++|+.|++++|
T Consensus       110 ~N~l~-~l~~----~l~~L~~L~L~~N  131 (622)
T 3g06_A          110 SNPLT-HLPA----LPSGLCKLWIFGN  131 (622)
T ss_dssp             SCCCC-CCCC----CCTTCCEEECCSS
T ss_pred             CCcCC-CCCC----CCCCcCEEECCCC
Confidence            88887 5664    3455566665554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.66  E-value=2e-17  Score=159.51  Aligned_cols=172  Identities=16%  Similarity=0.102  Sum_probs=113.0

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|+|++|.+. .+|..+.++++|++|+|++|.|+ .+|..|+.+++|++|+|++|.++ .+|..+  +.+++|++|+|+
T Consensus       227 ~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~--~~l~~L~~L~L~  301 (727)
T 4b8c_D          227 HALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL--GSCFQLKYFYFF  301 (727)
T ss_dssp             CEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSG--GGGTTCSEEECC
T ss_pred             cEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhh--cCCCCCCEEECC
Confidence            47999999998 88888889999999999999999 59999999999999999999999 679888  899999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF  160 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l  160 (305)
                      +|.|+ .+|.. |+.+++|+.|++++|.+.+..       |..+..                   .......++|++|.+
T Consensus       302 ~N~l~-~lp~~-~~~l~~L~~L~L~~N~l~~~~-------p~~~~~-------------------~~~~~~~l~l~~N~l  353 (727)
T 4b8c_D          302 DNMVT-TLPWE-FGNLCNLQFLGVEGNPLEKQF-------LKILTE-------------------KSVTGLIFYLRDNRP  353 (727)
T ss_dssp             SSCCC-CCCSS-TTSCTTCCCEECTTSCCCSHH-------HHHHHH-------------------HHHHHHHHHHHHCCC
T ss_pred             CCCCC-ccChh-hhcCCCccEEeCCCCccCCCC-------hHHHhh-------------------cchhhhHHhhccCcc
Confidence            99998 89987 999999999999997543211       110000                   001122366777777


Q ss_pred             ccccchhhcCCCCc------e----eeecCCccccCCCCCCEEeccCCcceecCC
Q 045166          161 DGAIPASIANLKGL------Q----FSGRIPQQLAELTFLAFFNVSDNYLTGPIP  205 (305)
Q Consensus       161 ~g~~p~~~~~L~~L------~----l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip  205 (305)
                      +|.+|..+..+.--      .    +.+..+..+.++..+....+++|-+.+...
T Consensus       354 ~~~~p~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~  408 (727)
T 4b8c_D          354 EIPLPHERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYA  408 (727)
T ss_dssp             CCCCCCC-----------------------------------------CCCGGGC
T ss_pred             cCcCccccceeEeecccccccccCCccccccchhhcccccceeeeeccccccccC
Confidence            77777766544211      1    333344455667778888899998865433

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.66  E-value=4.8e-16  Score=146.73  Aligned_cols=133  Identities=24%  Similarity=0.253  Sum_probs=105.4

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|+|++|++++..|  +..+++|+.|+|++|.+++ +| .+..+++|++|+|++|.+.+. + .+  ..+++|+.|+|+
T Consensus        68 ~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l-~-~l--~~l~~L~~L~Ls  139 (605)
T 1m9s_A           68 TKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI-N-GL--VHLPQLESLYLG  139 (605)
T ss_dssp             CEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC-G-GG--GGCTTCSEEECC
T ss_pred             CEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC-c-cc--cCCCccCEEECC
Confidence            579999999996554  9999999999999999987 55 789999999999999999873 3 45  789999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF  160 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l  160 (305)
                      +|.++ .++ . +..+++|+.|++++|.......                             ...+++|+.|+|++|+|
T Consensus       140 ~N~l~-~l~-~-l~~l~~L~~L~Ls~N~l~~~~~-----------------------------l~~l~~L~~L~Ls~N~i  187 (605)
T 1m9s_A          140 NNKIT-DIT-V-LSRLTKLDTLSLEDNQISDIVP-----------------------------LAGLTKLQNLYLSKNHI  187 (605)
T ss_dssp             SSCCC-CCG-G-GGSCTTCSEEECCSSCCCCCGG-----------------------------GTTCTTCCEEECCSSCC
T ss_pred             CCccC-Cch-h-hcccCCCCEEECcCCcCCCchh-----------------------------hccCCCCCEEECcCCCC
Confidence            99999 453 3 8999999999999864332111                             12367788888888888


Q ss_pred             ccccchhhcCCCCce
Q 045166          161 DGAIPASIANLKGLQ  175 (305)
Q Consensus       161 ~g~~p~~~~~L~~L~  175 (305)
                      ++ +| .+..+++|+
T Consensus       188 ~~-l~-~l~~l~~L~  200 (605)
T 1m9s_A          188 SD-LR-ALAGLKNLD  200 (605)
T ss_dssp             CB-CG-GGTTCTTCS
T ss_pred             CC-Ch-HHccCCCCC
Confidence            74 33 466666555

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.66  E-value=2.3e-17  Score=144.82  Aligned_cols=199  Identities=20%  Similarity=0.120  Sum_probs=139.2

Q ss_pred             CEEEcccCccccc-cChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccc-cceee-eCCCCCCCCCCCccEE
Q 045166            1 MFYLRNENTFLQR-IPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSN-IFYGI-IEEPRTSCGFSKLRII   77 (305)
Q Consensus         1 ~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~~~l~~L~~L   77 (305)
                      ++|++++|.+++. +|..+..+++|++|++++|.+++..|..++.+++|++|++++| .+++. ++..+  ..+++|++|
T Consensus        96 ~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~--~~~~~L~~L  173 (336)
T 2ast_B           96 QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL--SSCSRLDEL  173 (336)
T ss_dssp             CEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH--HHCTTCCEE
T ss_pred             CEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH--hcCCCCCEE
Confidence            5799999999866 8889999999999999999999888889999999999999999 67652 55545  678999999


Q ss_pred             eCCCC-ccccc-CChhhhhCcc-cchhccCcccc-cccccccCCCCcCCCccc-cccccccccccC-cc---cccccccc
Q 045166           78 DLSDN-RFTGK-LPSNSFLCWN-AMKIVNTSALR-YLQDVLFPYGQVSSNVLG-TYDYSRTMNSKG-RV---MTYNKIPN  148 (305)
Q Consensus        78 ~Ls~N-~l~g~-lp~~~~~~l~-~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~---~~~~~~~~  148 (305)
                      ++++| .+++. ++ ..+..++ +|++|++++|. .+....     ++..+.. ..+..+++..+. +.   ......++
T Consensus       174 ~l~~~~~l~~~~~~-~~~~~l~~~L~~L~l~~~~~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~  247 (336)
T 2ast_B          174 NLSWCFDFTEKHVQ-VAVAHVSETITQLNLSGYRKNLQKSD-----LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN  247 (336)
T ss_dssp             ECCCCTTCCHHHHH-HHHHHSCTTCCEEECCSCGGGSCHHH-----HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred             cCCCCCCcChHHHH-HHHHhcccCCCEEEeCCCcccCCHHH-----HHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC
Confidence            99999 99854 45 4478889 99999999874 221100     0100000 012223333333 11   22334478


Q ss_pred             cccEEEccCCc-cccccchhhcCCCCce---eeecCCc-cccCC-CCCCEEeccCCcceecCCCC
Q 045166          149 ILAGIILSNNR-FDGAIPASIANLKGLQ---FSGRIPQ-QLAEL-TFLAFFNVSDNYLTGPIPQG  207 (305)
Q Consensus       149 ~L~~LdLs~N~-l~g~~p~~~~~L~~L~---l~g~ip~-~l~~l-~~L~~L~Ls~N~l~g~ip~~  207 (305)
                      +|+.|++++|. +.......+.++++|+   +.|.+++ .+..+ .++..|++++|++++..|..
T Consensus       248 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          248 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred             CCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCccCHHHHHHHHhhCcceEEecccCccccCCc
Confidence            99999999995 3322222455555555   7777766 34444 34778889999999988864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.65  E-value=4.8e-16  Score=125.86  Aligned_cols=105  Identities=24%  Similarity=0.304  Sum_probs=96.5

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|+|++|+++ .+|..|.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..+  .++++|++|+|+
T Consensus        34 ~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f--~~l~~L~~L~L~  110 (193)
T 2wfh_A           34 TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTF--DGLKSLRLLSLH  110 (193)
T ss_dssp             CEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECC
T ss_pred             CEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHh--CCCCCCCEEECC
Confidence            47999999998 788999999999999999999999777889999999999999999998877778  899999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCccccc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRY  109 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~  109 (305)
                      +|+++ .+|...|..+++|+.|++++|.+
T Consensus       111 ~N~l~-~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          111 GNDIS-VVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             SSCCC-BCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCC-eeChhhhhcCccccEEEeCCCCe
Confidence            99999 78877799999999999998644

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.62  E-value=3.3e-18  Score=160.46  Aligned_cols=154  Identities=19%  Similarity=0.115  Sum_probs=90.2

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEeccCcc-------------cccCcchhhcCCCCCC-------------------
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQ-------------ISDTFPSWLGTLPKLN-------------------   49 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-------------l~~~~p~~~~~l~~L~-------------------   49 (305)
                      .|+|++|+++ .+|+.+++|++|+.|++++|.             +.+..|..++.+++|+                   
T Consensus       353 ~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~  431 (567)
T 1dce_A          353 RCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL  431 (567)
T ss_dssp             SCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             eccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhh
Confidence            5788899987 789999999999999987775             4555565555544444                   


Q ss_pred             -------------EEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCcccchhccCcccccccccccC
Q 045166           50 -------------VLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFP  116 (305)
Q Consensus        50 -------------~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~  116 (305)
                                   +|+|++|.+++ +|. +  +.+++|+.|+|++|.++ .+|.. ++.+++|+.|++++|...+     
T Consensus       432 ~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~--~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~Ls~N~l~~-----  500 (567)
T 1dce_A          432 ENSVLKMEYADVRVLHLAHKDLTV-LCH-L--EQLLLVTHLDLSHNRLR-ALPPA-LAALRCLEVLQASDNALEN-----  500 (567)
T ss_dssp             HHHHHHHHHTTCSEEECTTSCCSS-CCC-G--GGGTTCCEEECCSSCCC-CCCGG-GGGCTTCCEEECCSSCCCC-----
T ss_pred             cccccccCccCceEEEecCCCCCC-CcC-c--cccccCcEeecCccccc-ccchh-hhcCCCCCEEECCCCCCCC-----
Confidence                         44455554443 333 3  44445555555555554 44433 4444455555444432111     


Q ss_pred             CCCcCCCccccccccccccccCcccccccccccccEEEccCCccccccchhhcCCCCceeeecC-CccccCCCCCCEEec
Q 045166          117 YGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSGRI-PQQLAELTFLAFFNV  195 (305)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~g~i-p~~l~~l~~L~~L~L  195 (305)
                         +|                     ....+++|+.|||++|+|++                .. |..+..+++|++|+|
T Consensus       501 ---lp---------------------~l~~l~~L~~L~Ls~N~l~~----------------~~~p~~l~~l~~L~~L~L  540 (567)
T 1dce_A          501 ---VD---------------------GVANLPRLQELLLCNNRLQQ----------------SAAIQPLVSCPRLVLLNL  540 (567)
T ss_dssp             ---CG---------------------GGTTCSSCCEEECCSSCCCS----------------SSTTGGGGGCTTCCEEEC
T ss_pred             ---Cc---------------------ccCCCCCCcEEECCCCCCCC----------------CCCcHHHhcCCCCCEEEe
Confidence               00                     01114445555555555442                22 566778888999999


Q ss_pred             cCCcceecCCCC
Q 045166          196 SDNYLTGPIPQG  207 (305)
Q Consensus       196 s~N~l~g~ip~~  207 (305)
                      ++|++++.+|..
T Consensus       541 ~~N~l~~~~~~~  552 (567)
T 1dce_A          541 QGNSLCQEEGIQ  552 (567)
T ss_dssp             TTSGGGGSSSCT
T ss_pred             cCCcCCCCccHH
Confidence            999988776643

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.62  E-value=6.7e-17  Score=143.66  Aligned_cols=217  Identities=11%  Similarity=0.020  Sum_probs=133.7

Q ss_pred             CEEEcccCccccccC----hhhhcCC-CCCEEeccCcccccCcchhhcCC-----CCCCEEEcccccceeeeCCCCC--C
Q 045166            1 MFYLRNENTFLQRIP----RSLINCS-KLEFLGLGINQISDTFPSWLGTL-----PKLNVLILRSNIFYGIIEEPRT--S   68 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~--~   68 (305)
                      ++|||++|.+++..+    ..|..++ +|++|+|++|.+++..+..+..+     ++|++|+|++|.+++..+..+.  +
T Consensus        25 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l  104 (362)
T 3goz_A           25 TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTL  104 (362)
T ss_dssp             CEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred             eEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHH
Confidence            579999999997666    7788898 89999999999998777777764     9999999999999875544320  0


Q ss_pred             CCC-CCccEEeCCCCcccccCChhhhh----C-cccchhccCcccccccccccC----CCCcCCCccccccccccccccC
Q 045166           69 CGF-SKLRIIDLSDNRFTGKLPSNSFL----C-WNAMKIVNTSALRYLQDVLFP----YGQVSSNVLGTYDYSRTMNSKG  138 (305)
Q Consensus        69 ~~l-~~L~~L~Ls~N~l~g~lp~~~~~----~-l~~L~~L~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  138 (305)
                      ..+ ++|++|++++|.+++ .+...+.    . .++|++|++++|.........    ....+.     .+..+++..+.
T Consensus       105 ~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~-----~L~~L~Ls~n~  178 (362)
T 3goz_A          105 AAIPFTITVLDLGWNDFSS-KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA-----NVNSLNLRGNN  178 (362)
T ss_dssp             HTSCTTCCEEECCSSCGGG-SCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCT-----TCCEEECTTSC
T ss_pred             HhCCCCccEEECcCCcCCc-HHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCc-----cccEeeecCCC
Confidence            334 789999999999984 4433333    3 258999999986543211000    001111     12223333333


Q ss_pred             ccccc-------cccc-ccccEEEccCCccccc----cchhhcC----CCCceeee-----c----CCccccCCCCCCEE
Q 045166          139 RVMTY-------NKIP-NILAGIILSNNRFDGA----IPASIAN----LKGLQFSG-----R----IPQQLAELTFLAFF  193 (305)
Q Consensus       139 ~~~~~-------~~~~-~~L~~LdLs~N~l~g~----~p~~~~~----L~~L~l~g-----~----ip~~l~~l~~L~~L  193 (305)
                      +....       .... ++|+.|||++|++++.    ++..+..    |+.|.+++     .    +...+..+++|++|
T Consensus       179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L  258 (362)
T 3goz_A          179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV  258 (362)
T ss_dssp             GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEE
T ss_pred             CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEE
Confidence            32211       1112 4788888888888752    4444432    33333332     1    11234566777888


Q ss_pred             eccCCcceecCCC--------CCCCCccCCCccCCCCC
Q 045166          194 NVSDNYLTGPIPQ--------GKQFATFDNTSFDGNSG  223 (305)
Q Consensus       194 ~Ls~N~l~g~ip~--------~~~~~~l~~~~~~gNp~  223 (305)
                      ++++|.+++..+.        .....++..+++++|+.
T Consensus       259 ~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l  296 (362)
T 3goz_A          259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI  296 (362)
T ss_dssp             EEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred             EeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence            8887774432221        13445566667777764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=9e-16  Score=121.25  Aligned_cols=133  Identities=17%  Similarity=0.137  Sum_probs=101.3

Q ss_pred             CCCCCCEEEcccccce-eeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCC
Q 045166           44 TLPKLNVLILRSNIFY-GIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSS  122 (305)
Q Consensus        44 ~l~~L~~L~L~~N~l~-~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  122 (305)
                      ..++|++|++++|.++ +.+|..+  ..+++|++|++++|.+++ ++ . +..+++|+.|++++|......         
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~--~~l~~L~~L~l~~n~l~~-~~-~-~~~l~~L~~L~Ls~N~l~~~~---------   87 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLT--AEFVNLEFLSLINVGLIS-VS-N-LPKLPKLKKLELSENRIFGGL---------   87 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCC--GGGGGCCEEEEESSCCCC-CS-S-CCCCSSCCEEEEESCCCCSCC---------
T ss_pred             CcccCCEEECCCCCCChhhHHHHH--HhCCCCCEEeCcCCCCCC-hh-h-hccCCCCCEEECcCCcCchHH---------
Confidence            4588999999999998 6788887  889999999999999994 43 3 889999999999986443211         


Q ss_pred             CccccccccccccccCcccccccccccccEEEccCCccccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCccee
Q 045166          123 NVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTG  202 (305)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g  202 (305)
                                        ......+++|+.|+|++|++++ +|.              +..+..+++|++|++++|++++
T Consensus        88 ------------------~~~~~~l~~L~~L~Ls~N~l~~-~~~--------------~~~l~~l~~L~~L~l~~N~l~~  134 (168)
T 2ell_A           88 ------------------DMLAEKLPNLTHLNLSGNKLKD-IST--------------LEPLKKLECLKSLDLFNCEVTN  134 (168)
T ss_dssp             ------------------CHHHHHCTTCCEEECBSSSCCS-SGG--------------GGGGSSCSCCCEEECCSSGGGT
T ss_pred             ------------------HHHHhhCCCCCEEeccCCccCc-chh--------------HHHHhcCCCCCEEEeeCCcCcc
Confidence                              1122237889999999999983 321              1456789999999999999996


Q ss_pred             cCC----CCCCCCccCCCccCCCCC
Q 045166          203 PIP----QGKQFATFDNTSFDGNSG  223 (305)
Q Consensus       203 ~ip----~~~~~~~l~~~~~~gNp~  223 (305)
                      ..+    ....++.+..+++.+|..
T Consensus       135 ~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          135 LNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             STTHHHHHHTTCSSCCEETTEETTS
T ss_pred             hHHHHHHHHHhCccCcEecCCCCCh
Confidence            655    235567777777777753

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.62  E-value=1e-15  Score=121.94  Aligned_cols=142  Identities=9%  Similarity=0.025  Sum_probs=106.9

Q ss_pred             hhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhC
Q 045166           16 RSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLC   95 (305)
Q Consensus        16 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~   95 (305)
                      ..+.++.+|+.|++++|+++. +|......++|++|++++|.+++.  ..+  ..+++|++|++++|.++ .+|..++..
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l--~~l~~L~~L~Ls~N~l~-~~~~~~~~~   86 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGF--PLLRRLKTLLVNNNRIC-RIGEGLDQA   86 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCC--CCCSSCCEEECCSSCCC-EECSCHHHH
T ss_pred             HhcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--ccc--ccCCCCCEEECCCCccc-ccCcchhhc
Confidence            356789999999999999996 665333344999999999999975  466  88999999999999999 677676789


Q ss_pred             cccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccccccchhhcCCCCce
Q 045166           96 WNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ  175 (305)
Q Consensus        96 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~  175 (305)
                      +++|+.|++++|.... ..       .                  ......+++|+.|++++|.++ .+|..-       
T Consensus        87 l~~L~~L~L~~N~i~~-~~-------~------------------~~~l~~l~~L~~L~l~~N~i~-~~~~~~-------  132 (176)
T 1a9n_A           87 LPDLTELILTNNSLVE-LG-------D------------------LDPLASLKSLTYLCILRNPVT-NKKHYR-------  132 (176)
T ss_dssp             CTTCCEEECCSCCCCC-GG-------G------------------GGGGGGCTTCCEEECCSSGGG-GSTTHH-------
T ss_pred             CCCCCEEECCCCcCCc-ch-------h------------------hHhhhcCCCCCEEEecCCCCC-CcHhHH-------
Confidence            9999999998864321 10       0                  011223778999999999998 444320       


Q ss_pred             eeecCCccccCCCCCCEEeccCCccee
Q 045166          176 FSGRIPQQLAELTFLAFFNVSDNYLTG  202 (305)
Q Consensus       176 l~g~ip~~l~~l~~L~~L~Ls~N~l~g  202 (305)
                           ...+..+++|++||++.|....
T Consensus       133 -----~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          133 -----LYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             -----HHHHHHCTTCSEETTEECCHHH
T ss_pred             -----HHHHHHCCccceeCCCcCCHHH
Confidence                 0136778899999999998763

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.61  E-value=2e-15  Score=119.58  Aligned_cols=103  Identities=17%  Similarity=0.184  Sum_probs=91.4

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      +++|+++|+++ .+|..+  .++|++|+|++|+|++..|..|..+++|++|+|++|++++..+..+  .++++|++|+|+
T Consensus        12 ~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f--~~l~~L~~L~L~   86 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF--DKLTQLTQLSLN   86 (170)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhc--cCCCCCCEEECC
Confidence            46899999998 577766  3899999999999999778889999999999999999998766667  889999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCccccc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRY  109 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~  109 (305)
                      +|+++ .+|...|..+++|+.|++++|.+
T Consensus        87 ~N~l~-~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           87 DNQLK-SIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCccC-EeCHHHhcCCCCCCEEEeCCCCC
Confidence            99999 67766799999999999998644

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=2.6e-15  Score=119.65  Aligned_cols=107  Identities=17%  Similarity=0.156  Sum_probs=94.8

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+  ..+++|++|+++
T Consensus        31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~  108 (177)
T 2o6r_A           31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVF--DKLTQLKELALD  108 (177)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred             cEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHh--hCCcccCEEECc
Confidence            479999999997777788999999999999999998666678999999999999999998766667  789999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYL  110 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~  110 (305)
                      +|+++ .+|...+..+++|+.|++++|.+.
T Consensus       109 ~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A          109 TNQLK-SVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             SSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCcce-EeCHHHhcCCcccCEEEecCCCee
Confidence            99999 777777889999999999987543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.60  E-value=2.9e-15  Score=119.14  Aligned_cols=103  Identities=19%  Similarity=0.231  Sum_probs=91.1

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      +++++++|+++ .+|..+.  ++|++|+|++|+|++..|..|..+++|++|+|++|++++..+..+  .++++|++|+|+
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~--~~l~~L~~L~L~   89 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVF--DKLTQLTQLDLN   89 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHh--CCcchhhEEECC
Confidence            36899999997 7887664  899999999999999778899999999999999999998655556  789999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCccccc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRY  109 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~  109 (305)
                      +|+++ .+|...+..+++|+.|++++|.+
T Consensus        90 ~N~l~-~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           90 DNHLK-SIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             SSCCC-CCCTTTTTTCTTCSEEECCSSCB
T ss_pred             CCccc-eeCHHHhccccCCCEEEeCCCCc
Confidence            99999 67777799999999999998644

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.59  E-value=4.5e-15  Score=139.17  Aligned_cols=125  Identities=14%  Similarity=0.053  Sum_probs=69.2

Q ss_pred             CCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCcccchhcc
Q 045166           24 LEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVN  103 (305)
Q Consensus        24 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~  103 (305)
                      |+.|++++|.+++ +|. ++.+++|++|+|++|.++ .+|..+  +.+++|+.|+|++|+++ .+| . ++.+++|+.|+
T Consensus       443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~--~~l~~L~~L~Ls~N~l~-~lp-~-l~~l~~L~~L~  514 (567)
T 1dce_A          443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPAL--AALRCLEVLQASDNALE-NVD-G-VANLPRLQELL  514 (567)
T ss_dssp             CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGG--GGCTTCCEEECCSSCCC-CCG-G-GTTCSSCCEEE
T ss_pred             ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhh--hcCCCCCEEECCCCCCC-CCc-c-cCCCCCCcEEE
Confidence            5556666666655 454 555566666666666655 345555  55556666666666665 355 3 55556666665


Q ss_pred             CcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccccccchhhcCCCCceeeecCCcc
Q 045166          104 TSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSGRIPQQ  183 (305)
Q Consensus       104 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~g~ip~~  183 (305)
                      +++|...+..                          .+.....+++|+.|+|++|.|++..|. +            ...
T Consensus       515 Ls~N~l~~~~--------------------------~p~~l~~l~~L~~L~L~~N~l~~~~~~-~------------~~l  555 (567)
T 1dce_A          515 LCNNRLQQSA--------------------------AIQPLVSCPRLVLLNLQGNSLCQEEGI-Q------------ERL  555 (567)
T ss_dssp             CCSSCCCSSS--------------------------TTGGGGGCTTCCEEECTTSGGGGSSSC-T------------THH
T ss_pred             CCCCCCCCCC--------------------------CcHHHhcCCCCCEEEecCCcCCCCccH-H------------HHH
Confidence            5554322110                          001112267788899999999854432 1            122


Q ss_pred             ccCCCCCCEEec
Q 045166          184 LAELTFLAFFNV  195 (305)
Q Consensus       184 l~~l~~L~~L~L  195 (305)
                      +..+++|+.||+
T Consensus       556 ~~~lp~L~~L~l  567 (567)
T 1dce_A          556 AEMLPSVSSILT  567 (567)
T ss_dssp             HHHCTTCSEEEC
T ss_pred             HHHCcccCccCC
Confidence            344677777764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.59  E-value=4.1e-15  Score=131.52  Aligned_cols=194  Identities=13%  Similarity=0.101  Sum_probs=126.7

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcch-hhcCCCCCCE-EEcccccceeeeCCCCCCCCCCCccEEe
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPS-WLGTLPKLNV-LILRSNIFYGIIEEPRTSCGFSKLRIID   78 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~-L~L~~N~l~~~~p~~~~~~~l~~L~~L~   78 (305)
                      ++|+|++|+|+...+.+|.++++|++|+|++|++.+.+|. .|.+++++++ ++++.|+++...|..+  ..+++|++|+
T Consensus        33 ~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f--~~l~~L~~L~  110 (350)
T 4ay9_X           33 IELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF--QNLPNLQYLL  110 (350)
T ss_dssp             SEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB--CCCTTCCEEE
T ss_pred             CEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhh--hhcccccccc
Confidence            4799999999965566899999999999999999776665 5788988775 6677899998778878  8999999999


Q ss_pred             CCCCcccccCChhhhhCcccchhccCccccccccccc-C-----------------CCCcCCCcccc-cccccccc----
Q 045166           79 LSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLF-P-----------------YGQVSSNVLGT-YDYSRTMN----  135 (305)
Q Consensus        79 Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~-~-----------------~~~~~~~~~~~-~~~~~~~~----  135 (305)
                      +++|+++ .+|...+....++..+++.+++.+..... .                 ...++...+.. .+..+.+.    
T Consensus       111 l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~  189 (350)
T 4ay9_X          111 ISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN  189 (350)
T ss_dssp             EEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred             ccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence            9999998 56654455566666666654322221110 0                 01111111110 11111111    


Q ss_pred             ccCcccccccccccccEEEccCCccccccc-hhhcCCCCcee-----eecCCccccCCCCCCEEeccCCc
Q 045166          136 SKGRVMTYNKIPNILAGIILSNNRFDGAIP-ASIANLKGLQF-----SGRIPQQLAELTFLAFFNVSDNY  199 (305)
Q Consensus       136 ~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p-~~~~~L~~L~l-----~g~ip~~l~~l~~L~~L~Ls~N~  199 (305)
                      ...++...+..+++|+.|||++|+|+ .+| ..+.+|+.|+.     ...+| .+.++++|+.++++++.
T Consensus       190 l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          190 LEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS  257 (350)
T ss_dssp             CCCCCTTTTTTEECCSEEECTTSCCC-CCCSSSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred             ccCCCHHHhccCcccchhhcCCCCcC-ccChhhhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence            12233334455778888888888888 444 45666666662     22455 36777788888877643

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=1.5e-15  Score=117.53  Aligned_cols=115  Identities=17%  Similarity=0.160  Sum_probs=89.0

Q ss_pred             CCCCCCEEEcccccce-eeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCC
Q 045166           44 TLPKLNVLILRSNIFY-GIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSS  122 (305)
Q Consensus        44 ~l~~L~~L~L~~N~l~-~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  122 (305)
                      ..++|+.|++++|.++ +.+|..+  ..+++|++|++++|.+++ +  ..+..+++|+.|++++|......         
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~l~~-~--~~~~~l~~L~~L~Ls~n~i~~~~---------   80 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLT--DEFEELEFLSTINVGLTS-I--ANLPKLNKLKKLELSDNRVSGGL---------   80 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCC--TTCTTCCEEECTTSCCCC-C--TTCCCCTTCCEEECCSSCCCSCT---------
T ss_pred             CCccCeEEEccCCcCChhHHHHHH--hhcCCCcEEECcCCCCCC-c--hhhhcCCCCCEEECCCCcccchH---------
Confidence            3478999999999998 6788877  889999999999999994 4  33888999999999886433211         


Q ss_pred             CccccccccccccccCcccccccccccccEEEccCCccccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCccee
Q 045166          123 NVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTG  202 (305)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g  202 (305)
                                        ......+++|+.||+++|++++ +|              .|..+..+++|++|++++|++++
T Consensus        81 ------------------~~~~~~l~~L~~L~ls~N~i~~-~~--------------~~~~~~~l~~L~~L~l~~N~l~~  127 (149)
T 2je0_A           81 ------------------EVLAEKCPNLTHLNLSGNKIKD-LS--------------TIEPLKKLENLKSLDLFNCEVTN  127 (149)
T ss_dssp             ------------------HHHHHHCTTCCEEECTTSCCCS-HH--------------HHGGGGGCTTCCEEECTTCGGGG
T ss_pred             ------------------HHHhhhCCCCCEEECCCCcCCC-hH--------------HHHHHhhCCCCCEEeCcCCcccc
Confidence                              1122236789999999999984 22              12456788999999999999997


Q ss_pred             cCC
Q 045166          203 PIP  205 (305)
Q Consensus       203 ~ip  205 (305)
                      ..+
T Consensus       128 ~~~  130 (149)
T 2je0_A          128 LND  130 (149)
T ss_dssp             STT
T ss_pred             hHH
Confidence            654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.56  E-value=8.1e-15  Score=137.10  Aligned_cols=157  Identities=20%  Similarity=0.212  Sum_probs=111.2

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|+|++|+|+ .+|   ..+++|++|++++|+|++ +|. +..  +|++|+|++|++++ +|.     .+++|++|+++
T Consensus        83 ~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~-----~l~~L~~L~Ls  148 (571)
T 3cvr_A           83 TVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE-----LPALLEYINAD  148 (571)
T ss_dssp             SEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC-----CCTTCCEEECC
T ss_pred             CEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC-----cCccccEEeCC
Confidence            47899999998 677   557899999999999998 777 655  89999999999987 555     36889999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccc-------cEE
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNIL-------AGI  153 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-------~~L  153 (305)
                      +|.++ .+|.    .+++|+.|++++|....        +|. +. ..+..+++..+.+.. +.....+|       +.|
T Consensus       149 ~N~l~-~lp~----~l~~L~~L~Ls~N~L~~--------lp~-l~-~~L~~L~Ls~N~L~~-lp~~~~~L~~~~~~L~~L  212 (571)
T 3cvr_A          149 NNQLT-MLPE----LPTSLEVLSVRNNQLTF--------LPE-LP-ESLEALDVSTNLLES-LPAVPVRNHHSEETEIFF  212 (571)
T ss_dssp             SSCCS-CCCC----CCTTCCEEECCSSCCSC--------CCC-CC-TTCCEEECCSSCCSS-CCCCC--------CCEEE
T ss_pred             CCccC-cCCC----cCCCcCEEECCCCCCCC--------cch-hh-CCCCEEECcCCCCCc-hhhHHHhhhcccccceEE
Confidence            99998 4775    46788999998865432        111 11 223333344443331 11122256       999


Q ss_pred             EccCCccccccchhhcCCCCce--------eeecCCccccCCC
Q 045166          154 ILSNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELT  188 (305)
Q Consensus       154 dLs~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~  188 (305)
                      +|++|+|+ .+|..+.++++|+        +++.+|..+..+.
T Consensus       213 ~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          213 RCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             ECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             ecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            99999999 7898888888877        6667777766543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.54  E-value=1.8e-16  Score=145.01  Aligned_cols=105  Identities=12%  Similarity=-0.027  Sum_probs=65.9

Q ss_pred             CEEEcccCccccc----cChhhhcCCCCCEEeccCcccccCcchhhc-----CCCCCCEEEcccccceee----eCCCCC
Q 045166            1 MFYLRNENTFLQR----IPRSLINCSKLEFLGLGINQISDTFPSWLG-----TLPKLNVLILRSNIFYGI----IEEPRT   67 (305)
Q Consensus         1 ~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-----~l~~L~~L~L~~N~l~~~----~p~~~~   67 (305)
                      ++|++++|++++.    ++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.++..    ++..+ 
T Consensus       145 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l-  223 (461)
T 1z7x_W          145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV-  223 (461)
T ss_dssp             CEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH-
T ss_pred             eEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHH-
Confidence            4678888888763    356666778888888888887654333333     255777777777777642    33334 


Q ss_pred             CCCCCCccEEeCCCCcccccC----ChhhhhCcccchhccCccc
Q 045166           68 SCGFSKLRIIDLSDNRFTGKL----PSNSFLCWNAMKIVNTSAL  107 (305)
Q Consensus        68 ~~~l~~L~~L~Ls~N~l~g~l----p~~~~~~l~~L~~L~l~~~  107 (305)
                       ..+++|++|++++|.+++.-    ....+..+++|+.|++++|
T Consensus       224 -~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n  266 (461)
T 1z7x_W          224 -ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC  266 (461)
T ss_dssp             -HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             -HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence             45667777777777766321    1222334667777777665

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.52  E-value=6.5e-15  Score=117.27  Aligned_cols=130  Identities=11%  Similarity=0.055  Sum_probs=101.5

Q ss_pred             CEEEcccCccccccChhhhcC-CCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166            1 MFYLRNENTFLQRIPRSLINC-SKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L   79 (305)
                      ++|++++|+++ .+|. +..+ ++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+  ..+++|++|++
T Consensus        22 ~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L   95 (176)
T 1a9n_A           22 RELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLD--QALPDLTELIL   95 (176)
T ss_dssp             EEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHH--HHCTTCCEEEC
T ss_pred             eEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchh--hcCCCCCEEEC
Confidence            36999999999 5565 5555 499999999999998 4 578999999999999999997544445  68999999999


Q ss_pred             CCCcccccCCh-hhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCC
Q 045166           80 SDNRFTGKLPS-NSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNN  158 (305)
Q Consensus        80 s~N~l~g~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N  158 (305)
                      ++|+++ .+|. ..+..+++|+.|++++|.......                        ........+++|+.||+++|
T Consensus        96 ~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~------------------------~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           96 TNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKH------------------------YRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             CSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTT------------------------HHHHHHHHCTTCSEETTEEC
T ss_pred             CCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHh------------------------HHHHHHHHCCccceeCCCcC
Confidence            999997 7875 248889999999999865432100                        00011234788999999999


Q ss_pred             ccc
Q 045166          159 RFD  161 (305)
Q Consensus       159 ~l~  161 (305)
                      .+.
T Consensus       151 ~~~  153 (176)
T 1a9n_A          151 KLK  153 (176)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            876

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.51  E-value=6.9e-16  Score=141.15  Aligned_cols=106  Identities=18%  Similarity=0.075  Sum_probs=82.3

Q ss_pred             CEEEcccCccccccChhhhc-----CCCCCEEeccCcccccC----cchhhcCCCCCCEEEcccccceeee-----CCCC
Q 045166            1 MFYLRNENTFLQRIPRSLIN-----CSKLEFLGLGINQISDT----FPSWLGTLPKLNVLILRSNIFYGII-----EEPR   66 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~-----p~~~   66 (305)
                      ++|++++|.+++..+..+..     +++|++|++++|.+++.    ++..+..+++|++|++++|.++...     +..+
T Consensus       173 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~  252 (461)
T 1z7x_W          173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL  252 (461)
T ss_dssp             CEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred             CEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHh
Confidence            57999999998665555543     67999999999999874    5777888999999999999887532     2222


Q ss_pred             CCCCCCCccEEeCCCCccccc----CChhhhhCcccchhccCccccc
Q 045166           67 TSCGFSKLRIIDLSDNRFTGK----LPSNSFLCWNAMKIVNTSALRY  109 (305)
Q Consensus        67 ~~~~l~~L~~L~Ls~N~l~g~----lp~~~~~~l~~L~~L~l~~~~~  109 (305)
                        ..+++|++|++++|.++..    ++.. +..+++|+.|++++|..
T Consensus       253 --~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~i  296 (461)
T 1z7x_W          253 --HPSSRLRTLWIWECGITAKGCGDLCRV-LRAKESLKELSLAGNEL  296 (461)
T ss_dssp             --STTCCCCEEECTTSCCCHHHHHHHHHH-HHHCTTCCEEECTTCCC
T ss_pred             --cCCCCceEEECcCCCCCHHHHHHHHHH-HhhCCCcceEECCCCCC
Confidence              3578999999999999843    5544 77789999999998643

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.50  E-value=1.3e-16  Score=129.75  Aligned_cols=97  Identities=20%  Similarity=0.196  Sum_probs=60.0

Q ss_pred             EEcccCccccccCh------hhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccE
Q 045166            3 YLRNENTFLQRIPR------SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRI   76 (305)
Q Consensus         3 L~Ls~N~l~~~~p~------~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~   76 (305)
                      ++++.+.+.|.+|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+  ..+++|++
T Consensus        23 l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~--~~~~~L~~   97 (198)
T 1ds9_A           23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD--AVADTLEE   97 (198)
T ss_dssp             TTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH--HHHHHCSE
T ss_pred             cchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh--hcCCcCCE
Confidence            44555666655555      66666677777777776666 55 5666666777777766665 345444  44566667


Q ss_pred             EeCCCCcccccCChhhhhCcccchhccCccc
Q 045166           77 IDLSDNRFTGKLPSNSFLCWNAMKIVNTSAL  107 (305)
Q Consensus        77 L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~  107 (305)
                      |++++|+++ .+| . +..+++|+.|++++|
T Consensus        98 L~L~~N~l~-~l~-~-~~~l~~L~~L~l~~N  125 (198)
T 1ds9_A           98 LWISYNQIA-SLS-G-IEKLVNLRVLYMSNN  125 (198)
T ss_dssp             EEEEEEECC-CHH-H-HHHHHHSSEEEESEE
T ss_pred             EECcCCcCC-cCC-c-cccCCCCCEEECCCC
Confidence            777766666 344 2 555666666666654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.49  E-value=1.1e-16  Score=130.18  Aligned_cols=140  Identities=19%  Similarity=0.118  Sum_probs=113.8

Q ss_pred             hhhcCCCCCEEeccCcccccCcch------hhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCCh
Q 045166           17 SLINCSKLEFLGLGINQISDTFPS------WLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPS   90 (305)
Q Consensus        17 ~~~~l~~L~~L~L~~N~l~~~~p~------~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~   90 (305)
                      .+.....++.++++.+.+++.+|.      .+..+++|++|++++|.+++ +| .+  ..+++|++|++++|.++ .+|.
T Consensus        13 ~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~--~~l~~L~~L~l~~n~l~-~l~~   87 (198)
T 1ds9_A           13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SL--SGMENLRILSLGRNLIK-KIEN   87 (198)
T ss_dssp             HHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CH--HHHTTCCEEEEEEEEEC-SCSS
T ss_pred             HHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cc--ccCCCCCEEECCCCCcc-cccc
Confidence            467788899999999999988887      89999999999999999987 66 66  88999999999999999 8886


Q ss_pred             hhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccccccchhhcC
Q 045166           91 NSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIAN  170 (305)
Q Consensus        91 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~  170 (305)
                      . +..+++|+.|++++|.... .                          +  ....+++|+.|++++|++++ +|.    
T Consensus        88 ~-~~~~~~L~~L~L~~N~l~~-l--------------------------~--~~~~l~~L~~L~l~~N~i~~-~~~----  132 (198)
T 1ds9_A           88 L-DAVADTLEELWISYNQIAS-L--------------------------S--GIEKLVNLRVLYMSNNKITN-WGE----  132 (198)
T ss_dssp             H-HHHHHHCSEEEEEEEECCC-H--------------------------H--HHHHHHHSSEEEESEEECCC-HHH----
T ss_pred             h-hhcCCcCCEEECcCCcCCc-C--------------------------C--ccccCCCCCEEECCCCcCCc-hhH----
Confidence            4 7788999999999864321 0                          0  11237789999999999983 322    


Q ss_pred             CCCceeeecCCccccCCCCCCEEeccCCcceecCCC
Q 045166          171 LKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQ  206 (305)
Q Consensus       171 L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~  206 (305)
                                ...+..+++|++|++++|++++.+|.
T Consensus       133 ----------~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          133 ----------IDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             ----------HHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             ----------HHHHhcCCCCCEEEecCCcccccccc
Confidence                      02467889999999999999988765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.46  E-value=8.9e-14  Score=122.60  Aligned_cols=102  Identities=13%  Similarity=0.004  Sum_probs=90.2

Q ss_pred             EEEcccC-ccccccChhhhcCCCCCEEeccC-cccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166            2 FYLRNEN-TFLQRIPRSLINCSKLEFLGLGI-NQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL   79 (305)
Q Consensus         2 ~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L   79 (305)
                      .++++++ +++ .+|. +..+++|+.|+|++ |.|++..|..|.++++|++|+|++|++++..|..|  .++++|++|||
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l   87 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF--HFTPRLSRLNL   87 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGG--GSCSCCCEEEC
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHh--cCCcCCCEEeC
Confidence            4688888 888 5888 99999999999996 99999666889999999999999999999888888  89999999999


Q ss_pred             CCCcccccCChhhhhCcccchhccCccccc
Q 045166           80 SDNRFTGKLPSNSFLCWNAMKIVNTSALRY  109 (305)
Q Consensus        80 s~N~l~g~lp~~~~~~l~~L~~L~l~~~~~  109 (305)
                      ++|+|+ .+|...+..+. |+.|++.+|.+
T Consensus        88 ~~N~l~-~~~~~~~~~~~-L~~l~l~~N~~  115 (347)
T 2ifg_A           88 SFNALE-SLSWKTVQGLS-LQELVLSGNPL  115 (347)
T ss_dssp             CSSCCS-CCCSTTTCSCC-CCEEECCSSCC
T ss_pred             CCCccc-eeCHHHcccCC-ceEEEeeCCCc
Confidence            999999 77777677666 99999988643

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.46  E-value=1.8e-13  Score=108.35  Aligned_cols=86  Identities=20%  Similarity=0.140  Sum_probs=77.5

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|+|++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|++|+|++|++++..+..+  ..+++|++|+|+
T Consensus        33 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~  110 (170)
T 3g39_A           33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAF--DNLKSLTHIWLL  110 (170)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred             cEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHh--cCCCCCCEEEeC
Confidence            579999999998889999999999999999999998666678899999999999999998666667  889999999999


Q ss_pred             CCcccccC
Q 045166           81 DNRFTGKL   88 (305)
Q Consensus        81 ~N~l~g~l   88 (305)
                      +|.++..-
T Consensus       111 ~N~~~c~c  118 (170)
T 3g39_A          111 NNPWDCAC  118 (170)
T ss_dssp             SSCBCTTB
T ss_pred             CCCCCCCc
Confidence            99998443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.44  E-value=3.2e-13  Score=107.25  Aligned_cols=87  Identities=18%  Similarity=0.107  Sum_probs=76.9

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|+|++|++++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|++++..+..+  ..+++|++|+++
T Consensus        36 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--~~l~~L~~L~L~  113 (174)
T 2r9u_A           36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAF--DNLKSLTHIYLY  113 (174)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCSEEECC
T ss_pred             cEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHh--ccccCCCEEEeC
Confidence            579999999998889999999999999999999999555567899999999999999997655557  889999999999


Q ss_pred             CCcccccCCh
Q 045166           81 DNRFTGKLPS   90 (305)
Q Consensus        81 ~N~l~g~lp~   90 (305)
                      +|.+. ..+.
T Consensus       114 ~N~~~-c~~~  122 (174)
T 2r9u_A          114 NNPWD-CECR  122 (174)
T ss_dssp             SSCBC-TTBG
T ss_pred             CCCcc-cccc
Confidence            99998 4443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.31  E-value=8.6e-12  Score=109.10  Aligned_cols=78  Identities=13%  Similarity=0.023  Sum_probs=58.9

Q ss_pred             CEEEcccCccc--------------------cccChhhhc--------CCCCCEEeccCcccccCcchhhcCCCCCCEEE
Q 045166            1 MFYLRNENTFL--------------------QRIPRSLIN--------CSKLEFLGLGINQISDTFPSWLGTLPKLNVLI   52 (305)
Q Consensus         1 ~~L~Ls~N~l~--------------------~~~p~~~~~--------l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~   52 (305)
                      ++|||++|++.                    ...+.+|.+        |++|+.|+|++ .++..-+.+|.++++|+.++
T Consensus        52 ~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~  130 (329)
T 3sb4_A           52 KVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQ  130 (329)
T ss_dssp             CEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEE
T ss_pred             eEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEE
Confidence            47999999988                    233456778        99999999999 88875566788999999999


Q ss_pred             cccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166           53 LRSNIFYGIIEEPRTSCGFSKLRIIDLSD   81 (305)
Q Consensus        53 L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~   81 (305)
                      +++|.+....+..|  .++.++..+..+.
T Consensus       131 l~~n~i~~i~~~aF--~~~~~l~~l~~~~  157 (329)
T 3sb4_A          131 IRKKTAPNLLPEAL--ADSVTAIFIPLGS  157 (329)
T ss_dssp             BCCSSCCEECTTSS--CTTTCEEEECTTC
T ss_pred             cCCCCccccchhhh--cCCCceEEecCcc
Confidence            99998876555555  5666666666554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.25  E-value=1.6e-13  Score=122.09  Aligned_cols=166  Identities=11%  Similarity=-0.011  Sum_probs=100.9

Q ss_pred             CEEEcccCccccccChhhhcC-----CCCCEEeccCcccccCcchhhc-CCCCCCEEEcccccceeeeCCCCCC---CCC
Q 045166            1 MFYLRNENTFLQRIPRSLINC-----SKLEFLGLGINQISDTFPSWLG-TLPKLNVLILRSNIFYGIIEEPRTS---CGF   71 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~---~~l   71 (305)
                      ++|+|++|.++......+..+     ++|++|+|++|.++......+. .+++|++|+|++|.++......+..   ...
T Consensus        75 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~  154 (372)
T 3un9_A           75 RQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQ  154 (372)
T ss_dssp             CEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTT
T ss_pred             CEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcC
Confidence            468888888875544444433     6888888888888653333332 4567888888888886432222100   134


Q ss_pred             CCccEEeCCCCccccc----CChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCccccccccc
Q 045166           72 SKLRIIDLSDNRFTGK----LPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIP  147 (305)
Q Consensus        72 ~~L~~L~Ls~N~l~g~----lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (305)
                      ++|+.|+|++|.++..    ++. .+...++|++|++++|..-....                       ..........
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~-~L~~~~~L~~L~Ls~N~l~~~g~-----------------------~~L~~~L~~~  210 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLME-GLAGNTSVTHLSLLHTGLGDEGL-----------------------ELLAAQLDRN  210 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHH-HHHTCSSCCEEECTTSSCHHHHH-----------------------HHHHHHGGGC
T ss_pred             CccceeeCCCCCCChHHHHHHHH-HHhcCCCcCEEeCCCCCCCcHHH-----------------------HHHHHHHhcC
Confidence            6788888888888631    222 24567778888888754221000                       0000111224


Q ss_pred             ccccEEEccCCccccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCccee
Q 045166          148 NILAGIILSNNRFDGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTG  202 (305)
Q Consensus       148 ~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g  202 (305)
                      ++|+.|||++|.|++.-...+            +..+...++|++|||++|.|+.
T Consensus       211 ~~L~~L~Ls~N~i~~~g~~~l------------~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          211 RQLQELNVAYNGAGDTAALAL------------ARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             SCCCEEECCSSCCCHHHHHHH------------HHHHHHCSSCCEEECTTSSCCH
T ss_pred             CCcCeEECCCCCCCHHHHHHH------------HHHHHhCCCCCEEeccCCCCCH
Confidence            578888888888874322222            2345567889999999998864

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.23  E-value=1.6e-11  Score=108.11  Aligned_cols=83  Identities=19%  Similarity=0.123  Sum_probs=73.7

Q ss_pred             CEEEccc-CccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166            1 MFYLRNE-NTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L   79 (305)
                      ++|+|++ |+|++..|..|.++++|+.|+|++|+|++..|..|.++++|++|+|++|+|++..+..+  ..++ |+.|+|
T Consensus        34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~~~-L~~l~l  110 (347)
T 2ifg_A           34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV--QGLS-LQELVL  110 (347)
T ss_dssp             SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT--CSCC-CCEEEC
T ss_pred             eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHc--ccCC-ceEEEe
Confidence            4799996 99998888899999999999999999999888889999999999999999997655555  4555 999999


Q ss_pred             CCCcccc
Q 045166           80 SDNRFTG   86 (305)
Q Consensus        80 s~N~l~g   86 (305)
                      ++|.+..
T Consensus       111 ~~N~~~c  117 (347)
T 2ifg_A          111 SGNPLHC  117 (347)
T ss_dssp             CSSCCCC
T ss_pred             eCCCccC
Confidence            9999983

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.17  E-value=9.7e-13  Score=123.94  Aligned_cols=64  Identities=19%  Similarity=0.231  Sum_probs=29.3

Q ss_pred             cCCCCCEEeccCcccccCcchhhc-CCCCCCEEEcccc-cceee-eCCCCCCCCCCCccEEeCCCCccc
Q 045166           20 NCSKLEFLGLGINQISDTFPSWLG-TLPKLNVLILRSN-IFYGI-IEEPRTSCGFSKLRIIDLSDNRFT   85 (305)
Q Consensus        20 ~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N-~l~~~-~p~~~~~~~l~~L~~L~Ls~N~l~   85 (305)
                      .+++|++|++++|.+++..+..+. .+++|++|+|++| .++.. ++...  ..+++|++|++++|.++
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~i~  169 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIA--ATCRNLKELDLRESDVD  169 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHH--HHCTTCCEEECTTCEEE
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHH--HhCCCCCEEeCcCCccC
Confidence            445555555555555544444443 3555555555555 22211 11111  23455555555555544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.17  E-value=5.9e-12  Score=118.60  Aligned_cols=32  Identities=9%  Similarity=-0.005  Sum_probs=18.8

Q ss_pred             ccccccccEEEccCCccccccc-hhhcCCCCce
Q 045166          144 NKIPNILAGIILSNNRFDGAIP-ASIANLKGLQ  175 (305)
Q Consensus       144 ~~~~~~L~~LdLs~N~l~g~~p-~~~~~L~~L~  175 (305)
                      ...+++|+.|+|++|.+++... ..+..+++|+
T Consensus       289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~  321 (592)
T 3ogk_B          289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE  321 (592)
T ss_dssp             GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred             HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence            3446778888888888765433 2234444443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.09  E-value=3.5e-10  Score=98.85  Aligned_cols=103  Identities=14%  Similarity=0.102  Sum_probs=68.0

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEccccccee----eeCCCC-----------
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYG----IIEEPR-----------   66 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~----~~p~~~-----------   66 (305)
                      .|+|++ .++..-+.+|.+|++|+.|++++|.+....+..|.++.++..+.+..+....    .-...|           
T Consensus       105 ~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~  183 (329)
T 3sb4_A          105 KVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQ  183 (329)
T ss_dssp             C-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEE
T ss_pred             EEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEE
Confidence            467777 7776667789999999999999999876555566666666666554422100    000000           


Q ss_pred             ----------------CC---------------------CCCCCccEEeCCCCcccccCChhhhhCcccchhccCcc
Q 045166           67 ----------------TS---------------------CGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSA  106 (305)
Q Consensus        67 ----------------~~---------------------~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~  106 (305)
                                      ..                     ..+++|+.+++++|+++ .+|..+|.++.+|+.+++.+
T Consensus       184 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~  259 (329)
T 3sb4_A          184 VGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPH  259 (329)
T ss_dssp             ECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCT
T ss_pred             ecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCc
Confidence                            00                     02567888888887787 77777788888888887766

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.06  E-value=2.9e-11  Score=113.81  Aligned_cols=60  Identities=12%  Similarity=0.133  Sum_probs=36.9

Q ss_pred             CEEEcccCccccc----cChhhhcCCCCCEEeccCccccc----CcchhhcCCCCCCEEEccccccee
Q 045166            1 MFYLRNENTFLQR----IPRSLINCSKLEFLGLGINQISD----TFPSWLGTLPKLNVLILRSNIFYG   60 (305)
Q Consensus         1 ~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~   60 (305)
                      ++|+|++|.+++.    ++..+..+++|++|++++|.+++    .++..+..+++|++|++++|.+.+
T Consensus       167 ~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~  234 (592)
T 3ogk_B          167 KTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE  234 (592)
T ss_dssp             SEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred             CEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence            4677777777654    33445566777777777777652    234444566777777777666543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.91  E-value=1.2e-11  Score=116.45  Aligned_cols=42  Identities=26%  Similarity=0.297  Sum_probs=18.8

Q ss_pred             ChhhhcCCCCCEEeccCcccccCcc-hhhcCCCCCCEEEcccc
Q 045166           15 PRSLINCSKLEFLGLGINQISDTFP-SWLGTLPKLNVLILRSN   56 (305)
Q Consensus        15 p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N   56 (305)
                      |..+..+++|++|++++|.+++... ..+..+++|++|++++|
T Consensus       282 ~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          282 PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             GGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             HHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence            3333345555555555555433211 12334455555555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.88  E-value=5.9e-11  Score=105.54  Aligned_cols=142  Identities=13%  Similarity=0.007  Sum_probs=96.4

Q ss_pred             CEEEcccCccccccChhh-hcCCCCCEEeccCcccccCcchhh-----cCCCCCCEEEcccccceee----eCCCCCCCC
Q 045166            1 MFYLRNENTFLQRIPRSL-INCSKLEFLGLGINQISDTFPSWL-----GTLPKLNVLILRSNIFYGI----IEEPRTSCG   70 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~----~p~~~~~~~   70 (305)
                      ++|||++|.++..-...+ ..+++|+.|+|++|.++......+     ...++|++|+|++|.++..    ++..+  ..
T Consensus       104 ~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L--~~  181 (372)
T 3un9_A          104 DEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL--AG  181 (372)
T ss_dssp             EEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH--HT
T ss_pred             eEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH--hc
Confidence            379999999975444444 346789999999999976444444     2468899999999998642    22333  45


Q ss_pred             CCCccEEeCCCCccccc----CChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccc
Q 045166           71 FSKLRIIDLSDNRFTGK----LPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKI  146 (305)
Q Consensus        71 l~~L~~L~Ls~N~l~g~----lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (305)
                      +++|++|||++|.++..    ++ ..+...++|+.|++++|........                       ........
T Consensus       182 ~~~L~~L~Ls~N~l~~~g~~~L~-~~L~~~~~L~~L~Ls~N~i~~~g~~-----------------------~l~~~L~~  237 (372)
T 3un9_A          182 NTSVTHLSLLHTGLGDEGLELLA-AQLDRNRQLQELNVAYNGAGDTAAL-----------------------ALARAARE  237 (372)
T ss_dssp             CSSCCEEECTTSSCHHHHHHHHH-HHGGGCSCCCEEECCSSCCCHHHHH-----------------------HHHHHHHH
T ss_pred             CCCcCEEeCCCCCCCcHHHHHHH-HHHhcCCCcCeEECCCCCCCHHHHH-----------------------HHHHHHHh
Confidence            78899999999999732    22 2356677899999998643221000                       00001112


Q ss_pred             cccccEEEccCCccccccchhh
Q 045166          147 PNILAGIILSNNRFDGAIPASI  168 (305)
Q Consensus       147 ~~~L~~LdLs~N~l~g~~p~~~  168 (305)
                      .++|+.|||++|.|++.-...+
T Consensus       238 ~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          238 HPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             CSSCCEEECTTSSCCHHHHHHH
T ss_pred             CCCCCEEeccCCCCCHHHHHHH
Confidence            4679999999999986544444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.87  E-value=3.8e-08  Score=88.21  Aligned_cols=179  Identities=11%  Similarity=0.010  Sum_probs=91.8

Q ss_pred             EEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCC
Q 045166            3 YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDN   82 (305)
Q Consensus         3 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N   82 (305)
                      +++..| ++..-..+|.++ +|+.+.+.. .+...-+..|.++++|+.+++++|+++..-...|  . ..+|+.+.+..+
T Consensus       140 i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF--~-~~~L~~l~lp~~  213 (401)
T 4fdw_A          140 VVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF--V-YAGIEEVLLPVT  213 (401)
T ss_dssp             EECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT--T-TCCCSEEECCTT
T ss_pred             EEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhE--e-ecccCEEEeCCc
Confidence            344333 443334455553 466666664 4444344566667777777777776665333333  2 466777777643


Q ss_pred             cccccCChhhhhCcccchhccCccc-ccccccccCCCCcCCCccccccccccc--cccCcccccccccccccEEEccCCc
Q 045166           83 RFTGKLPSNSFLCWNAMKIVNTSAL-RYLQDVLFPYGQVSSNVLGTYDYSRTM--NSKGRVMTYNKIPNILAGIILSNNR  159 (305)
Q Consensus        83 ~l~g~lp~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~~LdLs~N~  159 (305)
                       ++ .++..+|.++++|+.+.+..+ ..++...|..    .     .+..+.+  ....+....+..+.+|+.+++.+|.
T Consensus       214 -l~-~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~----~-----~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~  282 (401)
T 4fdw_A          214 -LK-EIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE----S-----GITTVKLPNGVTNIASRAFYYCPELAEVTTYGST  282 (401)
T ss_dssp             -CC-EECTTTTTTCTTCCCEECCTTCCEECTTTTTT----C-----CCSEEEEETTCCEECTTTTTTCTTCCEEEEESSC
T ss_pred             -hh-eehhhHhhCCCCCCEEecCCCccCcccccccc----C-----CccEEEeCCCccEEChhHhhCCCCCCEEEeCCcc
Confidence             55 566666777777777766542 1111111110    0     0111111  1122233344557778888887776


Q ss_pred             cc-----cccchhhcCCCCce---ee----ecCCccccCCCCCCEEeccCC
Q 045166          160 FD-----GAIPASIANLKGLQ---FS----GRIPQQLAELTFLAFFNVSDN  198 (305)
Q Consensus       160 l~-----g~~p~~~~~L~~L~---l~----g~ip~~l~~l~~L~~L~Ls~N  198 (305)
                      +.     ..-+..|.++.+|+   +.    ..-...|.+|.+|+.+++..|
T Consensus       283 ~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          283 FNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             CCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT
T ss_pred             ccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc
Confidence            54     22334555555554   21    122345666777777777544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.86  E-value=3.4e-08  Score=88.54  Aligned_cols=182  Identities=12%  Similarity=0.021  Sum_probs=116.7

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD   81 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~   81 (305)
                      .+++.. .++..-+.+|.+|++|+.+++++|.++. +|.......+|+.+.+..+ ++..-...|  .++++|+.+++..
T Consensus       161 ~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~-I~~~aF~~~~L~~l~lp~~-l~~I~~~aF--~~~~~L~~l~l~~  235 (401)
T 4fdw_A          161 EIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK-LPASTFVYAGIEEVLLPVT-LKEIGSQAF--LKTSQLKTIEIPE  235 (401)
T ss_dssp             EEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE-ECTTTTTTCCCSEEECCTT-CCEECTTTT--TTCTTCCCEECCT
T ss_pred             EEEeCC-CccEehHHHhhCcccCCeeecCCCcceE-echhhEeecccCEEEeCCc-hheehhhHh--hCCCCCCEEecCC
Confidence            455654 5665566789999999999999999987 5544334689999999855 665555566  7888999999987


Q ss_pred             CcccccCChhhhhCcccchhccCccc-ccccccccCCCCcCCCcccccccccccccc--------CcccccccccccccE
Q 045166           82 NRFTGKLPSNSFLCWNAMKIVNTSAL-RYLQDVLFPYGQVSSNVLGTYDYSRTMNSK--------GRVMTYNKIPNILAG  152 (305)
Q Consensus        82 N~l~g~lp~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~L~~  152 (305)
                      | ++ .++..+|.+ .+|+.+.+.++ ..++...|..-   .     .+..+.+..+        .+....+..+.+|+.
T Consensus       236 ~-l~-~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c---~-----~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~  304 (401)
T 4fdw_A          236 N-VS-TIGQEAFRE-SGITTVKLPNGVTNIASRAFYYC---P-----ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLAR  304 (401)
T ss_dssp             T-CC-EECTTTTTT-CCCSEEEEETTCCEECTTTTTTC---T-----TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCE
T ss_pred             C-cc-Ccccccccc-CCccEEEeCCCccEEChhHhhCC---C-----CCCEEEeCCccccCCcccEECHHHhhCCccCCe
Confidence            5 55 677777776 67777766441 11111111000   0     1111111111        133344556888999


Q ss_pred             EEccCCccccccchhhcCCCCce---ee----ecCCccccCCCCCCEEeccCCcce
Q 045166          153 IILSNNRFDGAIPASIANLKGLQ---FS----GRIPQQLAELTFLAFFNVSDNYLT  201 (305)
Q Consensus       153 LdLs~N~l~g~~p~~~~~L~~L~---l~----g~ip~~l~~l~~L~~L~Ls~N~l~  201 (305)
                      ++|. +.++..-...|.++.+|+   +.    ..-+..|.++ +|+.+++++|.+.
T Consensus       305 l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          305 FEIP-ESIRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             ECCC-TTCCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             EEeC-CceEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence            9998 457744455777777766   32    2234578889 9999999999765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.85  E-value=8e-10  Score=93.13  Aligned_cols=98  Identities=16%  Similarity=0.061  Sum_probs=73.2

Q ss_pred             EEcccCccc---cccChhhhcCCCCCEEeccCccccc--CcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCC--Ccc
Q 045166            3 YLRNENTFL---QRIPRSLINCSKLEFLGLGINQISD--TFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFS--KLR   75 (305)
Q Consensus         3 L~Ls~N~l~---~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~--~L~   75 (305)
                      ++++.|+..   ..++....++++|+.|+|++|+|++  .+|..+..+++|+.|+|++|++++.  ..+  ..+.  +|+
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l--~~l~~l~L~  223 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL--DKIKGLKLE  223 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG--GGGTTSCCS
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh--hhcccCCcc
Confidence            345666432   2223333578999999999999998  4567778999999999999999874  123  3344  899


Q ss_pred             EEeCCCCcccccCCh------hhhhCcccchhccC
Q 045166           76 IIDLSDNRFTGKLPS------NSFLCWNAMKIVNT  104 (305)
Q Consensus        76 ~L~Ls~N~l~g~lp~------~~~~~l~~L~~L~l  104 (305)
                      .|+|++|.+++.+|.      .++..+++|+.||-
T Consensus       224 ~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          224 ELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             EEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             eEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence            999999999987773      34677888888873

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.55  E-value=1.3e-08  Score=81.29  Aligned_cols=69  Identities=16%  Similarity=0.030  Sum_probs=47.3

Q ss_pred             ChhhhcCCCCCEEeccCc-ccccC----cchhhcCCCCCCEEEcccccceee----eCCCCCCCCCCCccEEeCCCCccc
Q 045166           15 PRSLINCSKLEFLGLGIN-QISDT----FPSWLGTLPKLNVLILRSNIFYGI----IEEPRTSCGFSKLRIIDLSDNRFT   85 (305)
Q Consensus        15 p~~~~~l~~L~~L~L~~N-~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~~~l~~L~~L~Ls~N~l~   85 (305)
                      ...+...++|++|+|++| .+...    +...+...++|++|+|++|.+...    +...+  ...++|++|+|++|.+.
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L--~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML--KVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH--HHCSSCCEEECCSSCCC
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH--HhCCCcCEEECcCCcCC
Confidence            345667888899999988 87642    334455678888888888887532    11122  33467888888888887

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.45  E-value=8.6e-08  Score=80.71  Aligned_cols=75  Identities=21%  Similarity=0.263  Sum_probs=61.0

Q ss_pred             CEEEcccCcccc--ccChhhhcCCCCCEEeccCcccccCcchhhcCCC--CCCEEEcccccceeeeCC-------CCCCC
Q 045166            1 MFYLRNENTFLQ--RIPRSLINCSKLEFLGLGINQISDTFPSWLGTLP--KLNVLILRSNIFYGIIEE-------PRTSC   69 (305)
Q Consensus         1 ~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~p~-------~~~~~   69 (305)
                      ++|+|++|+|++  .+|..+..+++|+.|+|++|+|++.  ..+..+.  +|++|+|++|.+.+.+|.       .+  .
T Consensus       173 ~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il--~  248 (267)
T 3rw6_A          173 LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR--E  248 (267)
T ss_dssp             CEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH--H
T ss_pred             CEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHH--H
Confidence            479999999997  5678889999999999999999973  3455444  999999999999876653       13  5


Q ss_pred             CCCCccEEeC
Q 045166           70 GFSKLRIIDL   79 (305)
Q Consensus        70 ~l~~L~~L~L   79 (305)
                      .+++|+.||=
T Consensus       249 ~~P~L~~LDg  258 (267)
T 3rw6_A          249 RFPKLLRLDG  258 (267)
T ss_dssp             HCTTCCEESS
T ss_pred             HCcccCeECC
Confidence            6789998873

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.41  E-value=5.2e-08  Score=77.76  Aligned_cols=83  Identities=13%  Similarity=0.057  Sum_probs=64.4

Q ss_pred             CEEEcccC-ccccc----cChhhhcCCCCCEEeccCcccccC----cchhhcCCCCCCEEEcccccceee----eCCCCC
Q 045166            1 MFYLRNEN-TFLQR----IPRSLINCSKLEFLGLGINQISDT----FPSWLGTLPKLNVLILRSNIFYGI----IEEPRT   67 (305)
Q Consensus         1 ~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~   67 (305)
                      ++|+|++| .+...    +...+...++|++|+|++|.+...    +...+...++|++|+|++|.+...    +...+ 
T Consensus        39 ~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L-  117 (185)
T 1io0_A           39 EEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEAL-  117 (185)
T ss_dssp             CEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGG-
T ss_pred             CEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHH-
Confidence            47999999 88743    456677789999999999999753    344455678999999999998753    23334 


Q ss_pred             CCCCCCccEEeC--CCCccc
Q 045166           68 SCGFSKLRIIDL--SDNRFT   85 (305)
Q Consensus        68 ~~~l~~L~~L~L--s~N~l~   85 (305)
                       ...++|++|+|  ++|.+.
T Consensus       118 -~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          118 -QSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             -GGCSSCCEEECCCCSSCCC
T ss_pred             -HhCCCceEEEecCCCCCCC
Confidence             56678999999  889987

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.40  E-value=7.4e-08  Score=85.04  Aligned_cols=84  Identities=13%  Similarity=0.133  Sum_probs=57.7

Q ss_pred             hhhhcCCCCCEEeccCcccc---------cCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccc
Q 045166           16 RSLINCSKLEFLGLGINQIS---------DTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTG   86 (305)
Q Consensus        16 ~~~~~l~~L~~L~L~~N~l~---------~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g   86 (305)
                      .++..+++|+.|.+..+...         +.++..+..+++|+.|+|++|.-. .++. +   .+++|+.|++..+.+..
T Consensus       133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~---~~~~L~~L~L~~~~l~~  207 (362)
T 2ra8_A          133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K---PRPNLKSLEIISGGLPD  207 (362)
T ss_dssp             TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C---BCTTCSEEEEECSBCCH
T ss_pred             HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c---cCCCCcEEEEecCCCCh
Confidence            44567889999999765431         225556678899999999988311 2332 3   37899999999888763


Q ss_pred             cCChhhhh--CcccchhccCc
Q 045166           87 KLPSNSFL--CWNAMKIVNTS  105 (305)
Q Consensus        87 ~lp~~~~~--~l~~L~~L~l~  105 (305)
                      ..... +.  .+++|+.|+++
T Consensus       208 ~~l~~-l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          208 SVVED-ILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHHHH-HHHSBCTTCCEEEEE
T ss_pred             HHHHH-HHHccCCCCcEEEEe
Confidence            32222 32  68899998875

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.38  E-value=2.4e-07  Score=81.76  Aligned_cols=150  Identities=15%  Similarity=0.118  Sum_probs=92.1

Q ss_pred             ccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC--Cccccc---
Q 045166           13 RIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD--NRFTGK---   87 (305)
Q Consensus        13 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~--N~l~g~---   87 (305)
                      .++..+..+++|+.|++++|.-.. ++. + .+++|+.|+|..+.+.......+....+++|+.|+|+.  |...|.   
T Consensus       163 ~L~~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~  239 (362)
T 2ra8_A          163 DLSPVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM  239 (362)
T ss_dssp             BCHHHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred             CHHHHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence            355667889999999999884122 443 3 38899999999888754322222113689999999863  222111   


Q ss_pred             --CChhhh--hCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccccc
Q 045166           88 --LPSNSF--LCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGA  163 (305)
Q Consensus        88 --lp~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~  163 (305)
                        +.. .+  ..+++|+.|++.+|.......                       ..... ...+++|+.|||+.|.+++.
T Consensus       240 ~~l~~-~l~~~~~p~Lr~L~L~~~~i~~~~~-----------------------~~la~-a~~~~~L~~LdLs~n~L~d~  294 (362)
T 2ra8_A          240 NVFRP-LFSKDRFPNLKWLGIVDAEEQNVVV-----------------------EMFLE-SDILPQLETMDISAGVLTDE  294 (362)
T ss_dssp             GGTGG-GSCTTTCTTCCEEEEESCTTHHHHH-----------------------HHHHH-CSSGGGCSEEECCSSCCBHH
T ss_pred             HHHHH-HHhcCCCCCcCEEeCCCCCCchHHH-----------------------HHHHh-CccCCCCCEEECCCCCCChH
Confidence              111 12  246788888876643221000                       00000 01367899999999998854


Q ss_pred             cchhhcCCCCceeeecCCccccCCCCCCEEeccCCccee
Q 045166          164 IPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTG  202 (305)
Q Consensus       164 ~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g  202 (305)
                      -+..+            +..+..+++|+.|+|++|.++.
T Consensus       295 G~~~L------------~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          295 GARLL------------LDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             HHHHH------------HTTHHHHTTCSEEECCSBBCCH
T ss_pred             HHHHH------------HhhcccCCcceEEECCCCcCCH
Confidence            33322            2334567889999999998763

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.65  E-value=8.5e-06  Score=63.85  Aligned_cols=95  Identities=12%  Similarity=0.019  Sum_probs=64.2

Q ss_pred             cChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEccccc-ceeeeCCCCCCCCC----CCccEEeCCCCc-cccc
Q 045166           14 IPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNI-FYGIIEEPRTSCGF----SKLRIIDLSDNR-FTGK   87 (305)
Q Consensus        14 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~l----~~L~~L~Ls~N~-l~g~   87 (305)
                      +|.....--+|+.||++++.++..--..+..+++|++|+|++|. ++..--..+  +.+    ++|++|+|+++. ++..
T Consensus        53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L--~~~~~~~~~L~~L~Ls~C~~ITD~  130 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL--SQLENLQKSMLEMEIISCGNVTDK  130 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH--HTCHHHHHHCCEEEEESCTTCCHH
T ss_pred             CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH--HhcccccCCCCEEEcCCCCcCCHH
Confidence            34433333479999999999876544567889999999999985 543211122  333    479999999974 7622


Q ss_pred             CChhhhhCcccchhccCccccccc
Q 045166           88 LPSNSFLCWNAMKIVNTSALRYLQ  111 (305)
Q Consensus        88 lp~~~~~~l~~L~~L~l~~~~~~~  111 (305)
                      -- ..+..+++|+.|+++++..++
T Consensus       131 Gl-~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          131 GI-IALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HH-HHGGGCTTCCEEEEESCTTCC
T ss_pred             HH-HHHhcCCCCCEEECCCCCCCC
Confidence            11 236678899999998865443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.62  E-value=0.00023  Score=63.29  Aligned_cols=82  Identities=15%  Similarity=0.210  Sum_probs=36.7

Q ss_pred             hhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCc
Q 045166           17 SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCW   96 (305)
Q Consensus        17 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l   96 (305)
                      +|.++.+|+.+.+..+..+ .-...|.++++|+.+.+. +.++..-...|  .++.+|+.+++..+ ++ .+...+|.++
T Consensus       260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF--~~c~~L~~i~lp~~-v~-~I~~~aF~~C  333 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVF--AGCISLKSIDIPEG-IT-QILDDAFAGC  333 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTT--TTCTTCCEEECCTT-CC-EECTTTTTTC
T ss_pred             eeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceee--cCCCCcCEEEeCCc-cc-EehHhHhhCC
Confidence            4455555555555443322 122344455555555554 22332222233  44555555555432 33 4444445554


Q ss_pred             ccchhccC
Q 045166           97 NAMKIVNT  104 (305)
Q Consensus        97 ~~L~~L~l  104 (305)
                      .+|+.+.+
T Consensus       334 ~~L~~i~i  341 (394)
T 4gt6_A          334 EQLERIAI  341 (394)
T ss_dssp             TTCCEEEE
T ss_pred             CCCCEEEE
Confidence            55444443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.51  E-value=1.3e-05  Score=62.84  Aligned_cols=80  Identities=15%  Similarity=-0.017  Sum_probs=54.1

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEeccCcc-cccCcchhhcCC----CCCCEEEccccc-ceeeeCCCCCCCCCCCcc
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQ-ISDTFPSWLGTL----PKLNVLILRSNI-FYGIIEEPRTSCGFSKLR   75 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l----~~L~~L~L~~N~-l~~~~p~~~~~~~l~~L~   75 (305)
                      .||++++.++..--..+.+|++|+.|+|+++. ++..--..+..+    ++|++|+|++|. ++..--..+  ..+++|+
T Consensus        65 ~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L--~~~~~L~  142 (176)
T 3e4g_A           65 AIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL--HHFRNLK  142 (176)
T ss_dssp             EEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG--GGCTTCC
T ss_pred             EEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH--hcCCCCC
Confidence            68888888775544567788888888888884 665333345554    368888888874 553222234  5678888


Q ss_pred             EEeCCCCc
Q 045166           76 IIDLSDNR   83 (305)
Q Consensus        76 ~L~Ls~N~   83 (305)
                      .|+++++.
T Consensus       143 ~L~L~~c~  150 (176)
T 3e4g_A          143 YLFLSDLP  150 (176)
T ss_dssp             EEEEESCT
T ss_pred             EEECCCCC
Confidence            88888764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.40  E-value=0.00069  Score=60.18  Aligned_cols=60  Identities=15%  Similarity=0.139  Sum_probs=26.9

Q ss_pred             hhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166           17 SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus        17 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      +|.+|++|+.+.+..+ ++..-..+|.++++|+.+++..+ ++..-...|  .++.+|+.+.+.
T Consensus        66 AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF--~~c~~L~~i~~p  125 (394)
T 4fs7_A           66 AFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTF--SGCYALKSILLP  125 (394)
T ss_dssp             TTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTT--TTCTTCCCCCCC
T ss_pred             HhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhh--cccccchhhccc
Confidence            4555555555555432 33322334555555555555433 332222233  444555544443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.31  E-value=0.0013  Score=58.37  Aligned_cols=84  Identities=19%  Similarity=0.225  Sum_probs=57.8

Q ss_pred             ChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhh
Q 045166           15 PRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFL   94 (305)
Q Consensus        15 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~   94 (305)
                      ..+|.++..|+.+.+..+... .....|..+..++.+....+.+   ....+  ..+.+|+.+.+.++ ++ .++..+|.
T Consensus       246 ~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F--~~~~~L~~i~l~~~-i~-~I~~~aF~  317 (394)
T 4fs7_A          246 KSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTF--YGCSSLTEVKLLDS-VK-FIGEEAFE  317 (394)
T ss_dssp             SSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTT--TTCTTCCEEEECTT-CC-EECTTTTT
T ss_pred             cccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccc--cccccccccccccc-cc-eechhhhc
Confidence            456778889999988877543 2445677788888887766532   12234  67778888888654 55 67767788


Q ss_pred             CcccchhccCcc
Q 045166           95 CWNAMKIVNTSA  106 (305)
Q Consensus        95 ~l~~L~~L~l~~  106 (305)
                      ++.+|+.+++..
T Consensus       318 ~c~~L~~i~lp~  329 (394)
T 4fs7_A          318 SCTSLVSIDLPY  329 (394)
T ss_dssp             TCTTCCEECCCT
T ss_pred             CCCCCCEEEeCC
Confidence            888888777654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.29  E-value=0.00038  Score=51.70  Aligned_cols=57  Identities=16%  Similarity=0.235  Sum_probs=38.7

Q ss_pred             CEEeccCcccc-cCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCccc
Q 045166           25 EFLGLGINQIS-DTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFT   85 (305)
Q Consensus        25 ~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~   85 (305)
                      ..++.+++.++ ..+|..+.  ++|++|+|++|+|+...+..|  ..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f--~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLL--DALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTG--GGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhh--hhccccCEEEecCCCee
Confidence            36777777776 12664332  457888888888876544445  67778888888888764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.28  E-value=0.0012  Score=58.24  Aligned_cols=84  Identities=8%  Similarity=0.020  Sum_probs=43.7

Q ss_pred             hhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhC
Q 045166           16 RSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLC   95 (305)
Q Consensus        16 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~   95 (305)
                      ..+..+.+|+.+.+..+ +...-...+.++..|+.+.+..+ ++..-...+  .++.+|+.+++..+ +. .++..+|.+
T Consensus       211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF--~~~~~l~~i~l~~~-i~-~i~~~aF~~  284 (379)
T 4h09_A          211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLL--QNCTALKTLNFYAK-VK-TVPYLLCSG  284 (379)
T ss_dssp             TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTT--TTCTTCCEEEECCC-CS-EECTTTTTT
T ss_pred             cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcccc--ceeehhcccccccc-ce-ecccccccc
Confidence            44555666666666544 22223334556666666666544 333333333  55556666666433 33 455555666


Q ss_pred             cccchhccCc
Q 045166           96 WNAMKIVNTS  105 (305)
Q Consensus        96 l~~L~~L~l~  105 (305)
                      +.+|+.+.+.
T Consensus       285 c~~L~~i~l~  294 (379)
T 4h09_A          285 CSNLTKVVMD  294 (379)
T ss_dssp             CTTCCEEEEC
T ss_pred             cccccccccc
Confidence            6666655544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.28  E-value=0.00033  Score=52.07  Aligned_cols=34  Identities=21%  Similarity=0.240  Sum_probs=18.0

Q ss_pred             CccEEeCCCCcccccCChhhhhCcccchhccCccc
Q 045166           73 KLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSAL  107 (305)
Q Consensus        73 ~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~  107 (305)
                      +|++|||++|+|+ .+|.+.|..+++|+.|++++|
T Consensus        32 ~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           32 DTTELVLTGNNLT-ALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             TCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSS
T ss_pred             CCCEEECCCCcCC-ccChhhhhhccccCEEEecCC
Confidence            4555555555555 455554555555555555543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.23  E-value=0.0011  Score=58.84  Aligned_cols=88  Identities=18%  Similarity=0.307  Sum_probs=69.0

Q ss_pred             ccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhh
Q 045166           13 RIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNS   92 (305)
Q Consensus        13 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~   92 (305)
                      .-..+|.++++|+.+.+. +.++..-...|.++.+|+.+++..+ ++..-...|  .++.+|+.+.+..+ ++ .+...+
T Consensus       279 I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF--~~C~~L~~i~ip~s-v~-~I~~~a  352 (394)
T 4gt6_A          279 IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAF--AGCEQLERIAIPSS-VT-KIPESA  352 (394)
T ss_dssp             ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT--TTCTTCCEEEECTT-CC-BCCGGG
T ss_pred             ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHh--hCCCCCCEEEECcc-cC-EEhHhH
Confidence            345678899999999997 4555544457889999999999865 665445566  88999999999755 76 788888


Q ss_pred             hhCcccchhccCcc
Q 045166           93 FLCWNAMKIVNTSA  106 (305)
Q Consensus        93 ~~~l~~L~~L~l~~  106 (305)
                      |.++.+|+.+++.+
T Consensus       353 F~~C~~L~~i~~~~  366 (394)
T 4gt6_A          353 FSNCTALNNIEYSG  366 (394)
T ss_dssp             GTTCTTCCEEEESS
T ss_pred             hhCCCCCCEEEECC
Confidence            98888888887765

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.01  E-value=0.0024  Score=56.26  Aligned_cols=86  Identities=13%  Similarity=0.119  Sum_probs=47.4

Q ss_pred             ChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhh
Q 045166           15 PRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFL   94 (305)
Q Consensus        15 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~   94 (305)
                      ..+|.++.+|+.+.+..+ ++..-...|.++.+|+.+.+..+ ++..-...|  .++.+|+.+++.++.++ .++..+|.
T Consensus       233 ~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF--~~c~~L~~i~l~~~~i~-~I~~~aF~  307 (379)
T 4h09_A          233 DGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLC--SGCSNLTKVVMDNSAIE-TLEPRVFM  307 (379)
T ss_dssp             TTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTT--TTCTTCCEEEECCTTCC-EECTTTTT
T ss_pred             cccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccc--ccccccccccccccccc-eehhhhhc
Confidence            345666667777666554 33323344555666666666443 332222333  55666666666666665 55555566


Q ss_pred             CcccchhccCc
Q 045166           95 CWNAMKIVNTS  105 (305)
Q Consensus        95 ~l~~L~~L~l~  105 (305)
                      ++.+|+.+.+.
T Consensus       308 ~c~~L~~i~lp  318 (379)
T 4h09_A          308 DCVKLSSVTLP  318 (379)
T ss_dssp             TCTTCCEEECC
T ss_pred             CCCCCCEEEcC
Confidence            66666666554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.85  E-value=0.00061  Score=54.29  Aligned_cols=68  Identities=10%  Similarity=0.048  Sum_probs=43.8

Q ss_pred             hhcCCCCCEEeccCc-ccccC----cchhhcCCCCCCEEEcccccceeeeCCCCC--CCCCCCccEEeCCCCccc
Q 045166           18 LINCSKLEFLGLGIN-QISDT----FPSWLGTLPKLNVLILRSNIFYGIIEEPRT--SCGFSKLRIIDLSDNRFT   85 (305)
Q Consensus        18 ~~~l~~L~~L~L~~N-~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~--~~~l~~L~~L~Ls~N~l~   85 (305)
                      +.+-+.|+.|+|++| +|...    +-+.+..-+.|+.|+|++|.+...--..++  ...-+.|+.|+|++|.|.
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            345577888999885 76532    334455667788888888888643222220  012356888888888887

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.07  E-value=0.0032  Score=50.11  Aligned_cols=82  Identities=18%  Similarity=0.142  Sum_probs=58.5

Q ss_pred             CEEEcccC-cccc----ccChhhhcCCCCCEEeccCcccccC----cchhhcCCCCCCEEEcccccceeee----CCCCC
Q 045166            1 MFYLRNEN-TFLQ----RIPRSLINCSKLEFLGLGINQISDT----FPSWLGTLPKLNVLILRSNIFYGII----EEPRT   67 (305)
Q Consensus         1 ~~L~Ls~N-~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~----p~~~~   67 (305)
                      +.|+|++| ++..    .+-+++..-+.|+.|+|++|+|...    +.+.+..-+.|++|+|++|.+...-    -+.+ 
T Consensus        44 ~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL-  122 (197)
T 1pgv_A           44 KEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRST-  122 (197)
T ss_dssp             CEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHT-
T ss_pred             cEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHH-
Confidence            46899985 7753    2456677789999999999999753    3344455688999999999997421    1122 


Q ss_pred             CCCCCCccEEeCCCCcc
Q 045166           68 SCGFSKLRIIDLSDNRF   84 (305)
Q Consensus        68 ~~~l~~L~~L~Ls~N~l   84 (305)
                       ..-+.|+.|+|++|..
T Consensus       123 -~~N~tL~~L~L~n~~~  138 (197)
T 1pgv_A          123 -LVTQSIVEFKADNQRQ  138 (197)
T ss_dssp             -TTTCCCSEEECCCCSS
T ss_pred             -hhCCceeEEECCCCcC
Confidence             3345699999987643

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=88.15  E-value=0.54  Score=27.13  Aligned_cols=7  Identities=43%  Similarity=0.710  Sum_probs=2.7

Q ss_pred             eeehhhh
Q 045166          263 LTGYAGG  269 (305)
Q Consensus       263 ~~~~~~~  269 (305)
                      +.+++.+
T Consensus        14 A~gVVgG   20 (44)
T 2ks1_B           14 ATGMVGA   20 (44)
T ss_dssp             THHHHHH
T ss_pred             EeehhHH
Confidence            3344333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	305
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 79.4 bits (194), Expect = 1e-17
 Identities = 50/234 (21%), Positives = 81/234 (34%), Gaps = 5/234 (2%)

Query: 1   MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYG 60
             Y+   N  +  IP ++   ++L +L +    +S   P +L  +  L  L    N    
Sbjct: 80  FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS- 138

Query: 61  IIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWN---AMKIVNTSALRYLQDVLFPY 117
               P +      L  I    NR +G +P +         +M I        +       
Sbjct: 139 -GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197

Query: 118 GQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFS 177
                ++             G      KI      +     +   +   +  +L+  +  
Sbjct: 198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY 257

Query: 178 GRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSK 231
           G +PQ L +L FL   NVS N L G IPQG     FD +++  N  LCG PL  
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPA 311

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.7 bits (125), Expect = 2e-08
 Identities = 36/209 (17%), Positives = 65/209 (31%), Gaps = 43/209 (20%)

Query: 1   MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYG 60
           +  L   N  +  I   L   + L+ L L  NQ+ D     L +L  L  L L +N    
Sbjct: 199 LESLIATNNQISDIT-PLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 255

Query: 61  IIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQV 120
           +        G +KL  + L  N+ +   P         +++                   
Sbjct: 256 LAPL----SGLTKLTELKLGANQISNISPLAGLTALTNLEL------------------- 292

Query: 121 SSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIP-ASIANLKGLQFSG- 178
                          ++   ++       L  + L  N      P +S+  L+ L F+  
Sbjct: 293 -------------NENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANN 339

Query: 179 --RIPQQLAELTFLAFFNVSDNYLTGPIP 205
                  LA LT + + +   N ++   P
Sbjct: 340 KVSDVSSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 5e-06
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 17  SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRI 76
            + + +KL+ L    N++SD   S L  L  +N L    N    +          +++  
Sbjct: 324 PVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP----LANLTRITQ 377

Query: 77  IDLSDN 82
           + L+D 
Sbjct: 378 LGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 15  PRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSN 56
             SL N + + +L  G NQISD  P  L  L ++  L L   
Sbjct: 344 VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 5e-05
 Identities = 22/84 (26%), Positives = 30/84 (35%), Gaps = 3/84 (3%)

Query: 1   MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYG 60
                  N      P  L    KLE L L  N +++     L  L  L+ L+L+ N  Y 
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186

Query: 61  IIEEPRTSCGFSKLRIIDLSDNRF 84
           I   P+   G   L    L  N +
Sbjct: 187 I---PKGFFGSHLLPFAFLHGNPW 207

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 1e-04
 Identities = 30/176 (17%), Positives = 53/176 (30%), Gaps = 4/176 (2%)

Query: 4   LRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIE 63
           L N    +  +   L  CSKL+ L L   ++SD   + L     L  L L     +    
Sbjct: 53  LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 112

Query: 64  EPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPY---GQV 120
                   S+L  ++LS      +      +   +  I   +   Y +++          
Sbjct: 113 LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR 172

Query: 121 SSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSN-NRFDGAIPASIANLKGLQ 175
               L   D S ++  K          N L  + LS            +  +  L+
Sbjct: 173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK 228

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 1e-04
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 11/80 (13%)

Query: 20  NCSKLEFLGLGINQISDT----FPSWLGTLPKLNVLILRSN-----IFYGIIEEPRTSCG 70
             S L  L L    +SD+      + L     L  L L +N         ++E  R    
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG- 425

Query: 71  FSKLRIIDLSDNRFTGKLPS 90
              L  + L D  ++ ++  
Sbjct: 426 -CLLEQLVLYDIYWSEEMED 444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 11/90 (12%)

Query: 1   MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYG 60
              L   N     I         LE L +  N++    P+     P+L  LI   N    
Sbjct: 263 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHLAE 318

Query: 61  IIEEPRTSCGFSKLRIIDLSDNRFTGKLPS 90
           + E P        L+ + +  N    + P 
Sbjct: 319 VPELP------QNLKQLHVEYNPLR-EFPD 341

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 7e-04
 Identities = 17/111 (15%), Positives = 28/111 (25%), Gaps = 22/111 (19%)

Query: 8   NTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEE--- 64
           N        +  +   L  L L  N+IS         L  L+ L+L  N    +      
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198

Query: 65  -------------------PRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCW 96
                                       L+ + L+DN +     +     W
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW 249

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 21/141 (14%), Positives = 44/141 (31%), Gaps = 7/141 (4%)

Query: 10  FLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSC 69
            +++      N  +   L L   +I     +   TL + + +    N    +   P    
Sbjct: 7   LIEQAA-QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP---- 60

Query: 70  GFSKLRIIDLSDNRFTGKLPSNSFLC-WNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTY 128
              +L+ + +++NR                  I+  ++L  L D+       S   L   
Sbjct: 61  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 120

Query: 129 DYSRTMNSKGRVMTYNKIPNI 149
               T     R+    K+P +
Sbjct: 121 RNPVTNKKHYRLYVIYKVPQV 141

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	305
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.79
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.78
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.77
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.74
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.66
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.64
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.61
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.6
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.58
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.58
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.58
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.57
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.54
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.51
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.5
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.41
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.39
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.35
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.34
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.34
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.31
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.25
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.1
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.07
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.65
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.64
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.42
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.33
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.29
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.22
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.55
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.39
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.92
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.46

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=4.8e-30  Score=222.09  Aligned_cols=227  Identities=26%  Similarity=0.350  Sum_probs=177.1

Q ss_pred             EEEcccCcccc--ccChhhhcCCCCCEEeccC-cccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEe
Q 045166            2 FYLRNENTFLQ--RIPRSLINCSKLEFLGLGI-NQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIID   78 (305)
Q Consensus         2 ~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~   78 (305)
                      .|||++|.++|  .+|++++++++|++|+|++ |+++|.+|..|+++++|++|+|++|++.+..+..+  ..+.+|++++
T Consensus        54 ~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~--~~~~~L~~l~  131 (313)
T d1ogqa_          54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL--SQIKTLVTLD  131 (313)
T ss_dssp             EEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG--GGCTTCCEEE
T ss_pred             EEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccc--cchhhhcccc
Confidence            58999999997  5899999999999999986 89999999999999999999999999999887777  7889999999


Q ss_pred             CCCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCcc------------------cccccccccccc---
Q 045166           79 LSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVL------------------GTYDYSRTMNSK---  137 (305)
Q Consensus        79 Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~---  137 (305)
                      +++|.+.+.+|.. +..++.++.+++++|...+..+...........                  ...........+   
T Consensus       132 l~~N~~~~~~p~~-l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~  210 (313)
T d1ogqa_         132 FSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE  210 (313)
T ss_dssp             CCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEE
T ss_pred             cccccccccCchh-hccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999888866 889999999999886544322211111111100                  000001111111   


Q ss_pred             CcccccccccccccEEEccCCccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCCCC
Q 045166          138 GRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQ  209 (305)
Q Consensus       138 ~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~  209 (305)
                      +........+++++.+++++|.+++.+| .++.+++|+        ++|.+|++++++++|++|||++|+|+|.+|+...
T Consensus       211 ~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~  289 (313)
T d1ogqa_         211 GDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN  289 (313)
T ss_dssp             ECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTT
T ss_pred             cccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCccc
Confidence            1122333446789999999999997665 566655554        7889999999999999999999999999999888


Q ss_pred             CCccCCCccCCCCCCCCcCCCCCC
Q 045166          210 FATFDNTSFDGNSGLCGKPLSKGC  233 (305)
Q Consensus       210 ~~~l~~~~~~gNp~lc~~~~~~~c  233 (305)
                      +.+++..++.||+.+||.|+. .|
T Consensus       290 L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         290 LQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             GGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             CCCCCHHHhCCCccccCCCCC-CC
Confidence            899999999999999998874 55

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.5e-23  Score=174.50  Aligned_cols=191  Identities=19%  Similarity=0.164  Sum_probs=139.5

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD   81 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~   81 (305)
                      ..|.++++++ .+|+.+.  +++++|+|++|+|++..+..|.++++|++|+|++|+++. +|. +  +.+++|++|++++
T Consensus        14 ~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~~-~--~~l~~L~~L~Ls~   86 (266)
T d1p9ag_          14 EVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV-D--GTLPVLGTLDLSH   86 (266)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC-C--SCCTTCCEEECCS
T ss_pred             EEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-ccc-c--ccccccccccccc
Confidence            4688899998 6787664  589999999999998555678999999999999999985 443 4  6789999999999


Q ss_pred             CcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccc
Q 045166           82 NRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFD  161 (305)
Q Consensus        82 N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~  161 (305)
                      |+++ ..+.. +..+++|+.|+++++.......                           .....+.+++.|++++|.++
T Consensus        87 N~l~-~~~~~-~~~l~~L~~L~l~~~~~~~~~~---------------------------~~~~~l~~l~~L~l~~n~l~  137 (266)
T d1p9ag_          87 NQLQ-SLPLL-GQTLPALTVLDVSFNRLTSLPL---------------------------GALRGLGELQELYLKGNELK  137 (266)
T ss_dssp             SCCS-SCCCC-TTTCTTCCEEECCSSCCCCCCS---------------------------STTTTCTTCCEEECTTSCCC
T ss_pred             cccc-ccccc-cccccccccccccccccceeec---------------------------cccccccccccccccccccc
Confidence            9998 55644 8889999999998754322111                           11112444555555555555


Q ss_pred             cccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCC-CCCCccCCCccCCCCCCCCcCC
Q 045166          162 GAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKPL  229 (305)
Q Consensus       162 g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~l~~~~~~gNp~lc~~~~  229 (305)
                      +..+..+..+..++        +++..+..|..+++|++|||++|+|+ .+|+. .....+..+.++|||+.|+|..
T Consensus       138 ~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~~  213 (266)
T d1p9ag_         138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (266)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             eeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcch
Confidence            33333334333333        33444566788999999999999999 67764 4567788889999999998743

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.89  E-value=9.4e-24  Score=182.14  Aligned_cols=201  Identities=21%  Similarity=0.342  Sum_probs=153.6

Q ss_pred             CEEEccc-CccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166            1 MFYLRNE-NTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L   79 (305)
                      ++|||++ |+++|.+|++|+++++|++|+|++|++.+..|..+..+.+|+++++++|.+.+.+|..+  ++++.++++++
T Consensus        79 ~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l--~~l~~L~~l~l  156 (313)
T d1ogqa_          79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI--SSLPNLVGITF  156 (313)
T ss_dssp             SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG--GGCTTCCEEEC
T ss_pred             cccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhh--ccCcccceeec
Confidence            5799996 89999999999999999999999999999888889999999999999999999999888  89999999999


Q ss_pred             CCCcccccCChhhhhCcccc-hhccCcccccccccccCCC----------------CcCCCcccc-ccccccccccCccc
Q 045166           80 SDNRFTGKLPSNSFLCWNAM-KIVNTSALRYLQDVLFPYG----------------QVSSNVLGT-YDYSRTMNSKGRVM  141 (305)
Q Consensus        80 s~N~l~g~lp~~~~~~l~~L-~~L~l~~~~~~~~~~~~~~----------------~~~~~~~~~-~~~~~~~~~~~~~~  141 (305)
                      ++|.+.|.+|.. +..+..+ +.++++.|+..+......+                .++...... .+.......+.+..
T Consensus       157 ~~n~l~~~ip~~-~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~  235 (313)
T d1ogqa_         157 DGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF  235 (313)
T ss_dssp             CSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred             cccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999976 6666665 6677776544322111111                111111110 11112222222222


Q ss_pred             c--cccccccccEEEccCCccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCc-ceec-CC
Q 045166          142 T--YNKIPNILAGIILSNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNY-LTGP-IP  205 (305)
Q Consensus       142 ~--~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~-l~g~-ip  205 (305)
                      .  ....+++|+.|||++|+|+|.+|.+++++++|+        ++|.+|+ ++++++|+.+++++|+ +.|. +|
T Consensus       236 ~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~plp  310 (313)
T d1ogqa_         236 DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLP  310 (313)
T ss_dssp             BGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTTSS
T ss_pred             cccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCCCC
Confidence            2  233478899999999999999999999988887        7889985 6889999999999998 5664 44

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.6e-22  Score=172.05  Aligned_cols=215  Identities=14%  Similarity=0.119  Sum_probs=128.9

Q ss_pred             EEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC-C
Q 045166            3 YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS-D   81 (305)
Q Consensus         3 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls-~   81 (305)
                      ++.++++++ .+|..+.  +++++|+|++|+|+...+.+|.++++|++|++++|++....+..+  ..++.+..++.+ .
T Consensus        16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~--~~~~~~~~l~~~~~   90 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF--TGLALLEQLDLSDN   90 (284)
T ss_dssp             EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSC
T ss_pred             EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccc--cccccccccccccc
Confidence            344555555 4454332  445666666666655333445566666666666666655444444  445555555543 3


Q ss_pred             CcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccc---cCcccccccccccccEEEccCC
Q 045166           82 NRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNS---KGRVMTYNKIPNILAGIILSNN  158 (305)
Q Consensus        82 N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~L~~LdLs~N  158 (305)
                      |.++ .++...|.++++|++|++++|............ ..     .+..+.+..   ..+....+..+++|+.|++++|
T Consensus        91 ~~~~-~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~~-----~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N  163 (284)
T d1ozna_          91 AQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG-LA-----ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN  163 (284)
T ss_dssp             TTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-CT-----TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cccc-cccchhhcccccCCEEecCCcccccccccccch-hc-----ccchhhhccccccccChhHhccccchhhcccccC
Confidence            3333 444444555566666655554321111000000 00     011111111   1222333445778999999999


Q ss_pred             ccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCC-CCCCccCCCccCCCCCCCCcCC
Q 045166          159 RFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKPL  229 (305)
Q Consensus       159 ~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~l~~~~~~gNp~lc~~~~  229 (305)
                      ++++..|..+.++++|+        +++..|..|..+++|++||+++|++++..|.. .....+..++++|||+.|+|+.
T Consensus       164 ~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~  243 (284)
T d1ozna_         164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (284)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             cccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc
Confidence            99977778888888876        66778899999999999999999999766643 3566788889999999998764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.1e-20  Score=158.96  Aligned_cols=169  Identities=20%  Similarity=0.200  Sum_probs=129.7

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|||++|+|++..+.+|.++++|++|+|++|+|+. +| .++.+++|++|+|++|++++ .+..+  ..+++|++|+++
T Consensus        34 ~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~~-~~~~~--~~l~~L~~L~l~  108 (266)
T d1p9ag_          34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQS-LPLLG--QTLPALTVLDVS  108 (266)
T ss_dssp             CEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCSS-CCCCT--TTCTTCCEEECC
T ss_pred             CEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccccccccccc-ccccc--cccccccccccc
Confidence            579999999997777889999999999999999986 55 36789999999999999986 46666  789999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF  160 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l  160 (305)
                      +|.+. .++...+..+.+++.|++++|.....        +                   ......+++++.+++++|++
T Consensus       109 ~~~~~-~~~~~~~~~l~~l~~L~l~~n~l~~l--------~-------------------~~~~~~l~~l~~l~l~~N~l  160 (266)
T d1p9ag_         109 FNRLT-SLPLGALRGLGELQELYLKGNELKTL--------P-------------------PGLLTPTPKLEKLSLANNNL  160 (266)
T ss_dssp             SSCCC-CCCSSTTTTCTTCCEEECTTSCCCCC--------C-------------------TTTTTTCTTCCEEECTTSCC
T ss_pred             ccccc-eeecccccccccccccccccccccee--------c-------------------cccccccccchhcccccccc
Confidence            99998 66666688899999999988543221        1                   11122245566666666666


Q ss_pred             ccccchhhcCCCCce---eee----cCCccccCCCCCCEEeccCCccee
Q 045166          161 DGAIPASIANLKGLQ---FSG----RIPQQLAELTFLAFFNVSDNYLTG  202 (305)
Q Consensus       161 ~g~~p~~~~~L~~L~---l~g----~ip~~l~~l~~L~~L~Ls~N~l~g  202 (305)
                      ++..+..+..+++|+   +++    .+|+.+..+++|+.|+|++|++..
T Consensus       161 ~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             cccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCCC
Confidence            655555555555444   221    567777889999999999999875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.79  E-value=8e-20  Score=146.14  Aligned_cols=180  Identities=19%  Similarity=0.219  Sum_probs=123.8

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEeccCcccccCc-chhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTF-PSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|.++|+++ .+|..+.  +++++|+|++|+|++.+ +..|..+++|++|+|++|.+....+..+  ..+++|++|+|+
T Consensus        12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~--~~~~~L~~L~Ls   86 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF--EGASHIQELQLG   86 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT--TTCTTCCEEECC
T ss_pred             EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccc--ccccccceeeec
Confidence            5789999998 7787653  78999999999998644 5567899999999999999998888877  889999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF  160 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l  160 (305)
                      +|+++ .+|.+.|.++++|++|++++|....                           +....+..+++|++|+|++|.+
T Consensus        87 ~N~l~-~l~~~~F~~l~~L~~L~L~~N~l~~---------------------------i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          87 ENKIK-EISNKMFLGLHQLKTLNLYDNQISC---------------------------VMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             SCCCC-EECSSSSTTCTTCCEEECCSSCCCE---------------------------ECTTSSTTCTTCCEEECTTCCB
T ss_pred             ccccc-ccCHHHHhCCCcccccccCCccccc---------------------------cCHHHhcCCccccccccccccc
Confidence            99999 6776778888888888888754322                           1112223366788888888877


Q ss_pred             ccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCCCCCCcCCCCCC
Q 045166          161 DGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGC  233 (305)
Q Consensus       161 ~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp~lc~~~~~~~c  233 (305)
                      ....+...               +.  ..++.+.+..|.+++..|.  .+......++..|...|.++....|
T Consensus       139 ~~~~~~~~---------------~~--~~l~~~~l~~~~~~c~~p~--~l~~~~l~~L~~n~l~C~~~~~~g~  192 (192)
T d1w8aa_         139 NCNCHLAW---------------FA--EWLRKKSLNGGAARCGAPS--KVRDVQIKDLPHSEFKCSSENSEGC  192 (192)
T ss_dssp             CCSGGGHH---------------HH--HHHHHHCCSGGGCBBCSST--TTTTSBGGGSCTTTCCCCCC---CC
T ss_pred             ccccchHH---------------Hh--hhhhhhcccCCCeEeCCCh--hhcCCEeeecCHhhCcCCCCCCCCC
Confidence            64332111               00  1133344556666665554  3344444556667666765544443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=2.9e-18  Score=146.67  Aligned_cols=58  Identities=26%  Similarity=0.182  Sum_probs=27.3

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccce
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFY   59 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~   59 (305)
                      +|||++|+|+...+.+|.++++|++|++++|.+....|..|..+++|++|++++|+++
T Consensus        35 ~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~   92 (305)
T d1xkua_          35 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK   92 (305)
T ss_dssp             EEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS
T ss_pred             EEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC
Confidence            4445555544322234444555555555555544433444444555555555555444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.6e-19  Score=151.85  Aligned_cols=194  Identities=16%  Similarity=0.138  Sum_probs=138.2

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcc-cccceeeeCCCCCCCCCCCccEEeC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILR-SNIFYGIIEEPRTSCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~-~N~l~~~~p~~~~~~~l~~L~~L~L   79 (305)
                      ++|||++|+|++..+.+|.++++|++|++++|.+....+..+..+..++.++.. .|.++...|..+  .++++|++|++
T Consensus        35 ~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~--~~l~~L~~L~l  112 (284)
T d1ozna_          35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF--HGLGRLHTLHL  112 (284)
T ss_dssp             SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT--TTCTTCCEEEC
T ss_pred             CEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhh--cccccCCEEec
Confidence            579999999997667789999999999999999987666666677777777654 455555445555  67777777777


Q ss_pred             CCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCcccc--ccccccccccC---cccccccccccccEEE
Q 045166           80 SDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGT--YDYSRTMNSKG---RVMTYNKIPNILAGII  154 (305)
Q Consensus        80 s~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~L~~Ld  154 (305)
                      ++|.+. .++...+....+|+.+++++|....        ++...+..  .+..+++..+.   +....+..+++|+.++
T Consensus       113 ~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~--------i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~  183 (284)
T d1ozna_         113 DRCGLQ-ELGPGLFRGLAALQYLYLQDNALQA--------LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL  183 (284)
T ss_dssp             TTSCCC-CCCTTTTTTCTTCCEEECCSSCCCC--------CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCcccc-cccccccchhcccchhhhccccccc--------cChhHhccccchhhcccccCcccccchhhhccccccchhh
Confidence            777776 4444456677777777777653321        11111110  12222233322   2334455688999999


Q ss_pred             ccCCccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCC
Q 045166          155 LSNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIP  205 (305)
Q Consensus       155 Ls~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip  205 (305)
                      +++|++++..|..|..+++|+        +.+..|..|..+++|++|++++|++.+..+
T Consensus       184 l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             hhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            999999988899998888776        555667789999999999999999997654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=1.2e-18  Score=139.13  Aligned_cols=106  Identities=21%  Similarity=0.205  Sum_probs=96.0

Q ss_pred             CEEEcccCcccccc-ChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166            1 MFYLRNENTFLQRI-PRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L   79 (305)
                      ++|+|++|+|++.+ +..|.++++|+.|++++|.+.+..+..+..+++|++|+|++|+++...|..|  .++++|++|+|
T Consensus        32 ~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F--~~l~~L~~L~L  109 (192)
T d1w8aa_          32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMF--LGLHQLKTLNL  109 (192)
T ss_dssp             SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSS--TTCTTCCEEEC
T ss_pred             CEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHH--hCCCccccccc
Confidence            47999999998644 6678999999999999999999888899999999999999999998777778  89999999999


Q ss_pred             CCCcccccCChhhhhCcccchhccCccccc
Q 045166           80 SDNRFTGKLPSNSFLCWNAMKIVNTSALRY  109 (305)
Q Consensus        80 s~N~l~g~lp~~~~~~l~~L~~L~l~~~~~  109 (305)
                      ++|+|+ .+|.+.|..+++|+++++++|.+
T Consensus       110 ~~N~l~-~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_         110 YDNQIS-CVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CSSCCC-EECTTSSTTCTTCCEEECTTCCB
T ss_pred             CCcccc-ccCHHHhcCCccccccccccccc
Confidence            999999 77777799999999999998643

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=9.7e-17  Score=129.74  Aligned_cols=161  Identities=17%  Similarity=0.137  Sum_probs=77.1

Q ss_pred             CCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCcccch
Q 045166           21 CSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMK  100 (305)
Q Consensus        21 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~  100 (305)
                      +.+|+.|++++|.++. ++ .+..+++|++|++++|++++..  .+  +.+++|++|++++|+++ .+| . +..+++|+
T Consensus        45 L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~l~--~~--~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~  115 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIK--PL--ANLKNLGWLFLDENKVK-DLS-S-LKDLKKLK  115 (210)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG--GG--TTCTTCCEEECCSSCCC-CGG-G-GTTCTTCC
T ss_pred             hcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccCcc--cc--ccCcccccccccccccc-ccc-c-cccccccc
Confidence            4455555555555554 22 2445555555555555555422  23  44555555555555555 344 2 45555555


Q ss_pred             hccCcccccccccccCCCCcCCCccccccccccccccCcc-cccccccccccEEEccCCccccccchhhcCCCCceeeec
Q 045166          101 IVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRV-MTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSGR  179 (305)
Q Consensus       101 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~g~  179 (305)
                      .|+++++.......  ...++      .+.......+.+. ......+++|+.+++++|++++ +               
T Consensus       116 ~L~l~~~~~~~~~~--l~~l~------~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~-i---------------  171 (210)
T d1h6ta2         116 SLSLEHNGISDING--LVHLP------QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD-I---------------  171 (210)
T ss_dssp             EEECTTSCCCCCGG--GGGCT------TCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-C---------------
T ss_pred             cccccccccccccc--ccccc------cccccccccccccccccccccccccccccccccccc-c---------------
Confidence            55555432111000  00000      0000000000000 0112235667777777777762 2               


Q ss_pred             CCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCc
Q 045166          180 IPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTS  217 (305)
Q Consensus       180 ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~  217 (305)
                       + .++++++|+.|++++|+++ .+|....+.+++.++
T Consensus       172 -~-~l~~l~~L~~L~Ls~N~i~-~l~~l~~l~~L~~L~  206 (210)
T d1h6ta2         172 -V-PLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLE  206 (210)
T ss_dssp             -G-GGTTCTTCCEEECCSSCCC-BCGGGTTCTTCSEEE
T ss_pred             -c-cccCCCCCCEEECCCCCCC-CChhhcCCCCCCEEE
Confidence             2 2577888999999999887 455444444444443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=2.5e-16  Score=126.23  Aligned_cols=155  Identities=18%  Similarity=0.179  Sum_probs=82.5

Q ss_pred             cccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcc
Q 045166            5 RNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRF   84 (305)
Q Consensus         5 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l   84 (305)
                      ++.+.+++.++  ...+.++++|++++|.++. ++ .+..+++|++|++++|++++..|  +  +++++|++|++++|.+
T Consensus        25 l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l~-~l~~l~nL~~L~Ls~N~l~~~~~--l--~~l~~L~~L~l~~n~~   96 (199)
T d2omxa2          25 LGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--L--KNLTKLVDILMNNNQI   96 (199)
T ss_dssp             TTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--G--TTCTTCCEEECCSSCC
T ss_pred             hCCCCCCCccC--HHHhcCCCEEECCCCCCCC-cc-ccccCCCcCcCccccccccCccc--c--cCCccccccccccccc
Confidence            34445544332  2345666666666666654 32 35566666666666666665322  4  5666666666666666


Q ss_pred             cccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcccccc
Q 045166           85 TGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAI  164 (305)
Q Consensus        85 ~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~  164 (305)
                      . .++.  +.+++.|+.++++++......                             ....+++|+.|++++|++. .+
T Consensus        97 ~-~~~~--l~~l~~L~~L~l~~~~~~~~~-----------------------------~~~~l~~L~~L~l~~n~l~-~~  143 (199)
T d2omxa2          97 A-DITP--LANLTNLTGLTLFNNQITDID-----------------------------PLKNLTNLNRLELSSNTIS-DI  143 (199)
T ss_dssp             C-CCGG--GTTCTTCSEEECCSSCCCCCG-----------------------------GGTTCTTCSEEECCSSCCC-CC
T ss_pred             c-cccc--ccccccccccccccccccccc-----------------------------ccchhhhhHHhhhhhhhhc-cc
Confidence            5 4542  556666666666553221100                             0111444555555555554 22


Q ss_pred             chhhcCCCCce---eee----cCCccccCCCCCCEEeccCCccee
Q 045166          165 PASIANLKGLQ---FSG----RIPQQLAELTFLAFFNVSDNYLTG  202 (305)
Q Consensus       165 p~~~~~L~~L~---l~g----~ip~~l~~l~~L~~L~Ls~N~l~g  202 (305)
                      | .+..+++|+   +.+    .+ +.++++++|++|++++|+++.
T Consensus       144 ~-~l~~~~~L~~L~l~~n~l~~l-~~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         144 S-ALSGLTSLQQLNFSSNQVTDL-KPLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             G-GGTTCTTCSEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCC
T ss_pred             c-cccccccccccccccccccCC-ccccCCCCCCEEECCCCCCCC
Confidence            2 222222222   111    12 236778888888888888874

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.66  E-value=5.2e-16  Score=132.45  Aligned_cols=211  Identities=19%  Similarity=0.213  Sum_probs=146.5

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD   81 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~   81 (305)
                      ++|-++++++ .+|..+.  +++++|+|++|+|+...+.+|.++++|++|++++|.+....|..|  ..+++|++|++++
T Consensus        14 ~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f--~~l~~L~~L~l~~   88 (305)
T d1xkua_          14 VVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF--APLVKLERLYLSK   88 (305)
T ss_dssp             EEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT--TTCTTCCEEECCS
T ss_pred             EEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhh--hCCCccCEecccC
Confidence            5778888888 6777663  789999999999998444579999999999999999998777778  8999999999999


Q ss_pred             CcccccCChhhhhCcccchhccCccccccccc--ccCC---------CCcC--------CCcccc-ccccccccccCccc
Q 045166           82 NRFTGKLPSNSFLCWNAMKIVNTSALRYLQDV--LFPY---------GQVS--------SNVLGT-YDYSRTMNSKGRVM  141 (305)
Q Consensus        82 N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~--~~~~---------~~~~--------~~~~~~-~~~~~~~~~~~~~~  141 (305)
                      |+++ .+|...+   ..+..|.+..|......  .+..         ...+        ..+... .+.......+.+..
T Consensus        89 n~l~-~l~~~~~---~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~  164 (305)
T d1xkua_          89 NQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  164 (305)
T ss_dssp             SCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CccC-cCccchh---hhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc
Confidence            9999 7886533   34455554443211100  0000         0000        000000 01112222222222


Q ss_pred             ccccccccccEEEccCCccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCC-CCCCc
Q 045166          142 TYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFAT  212 (305)
Q Consensus       142 ~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~  212 (305)
                      .....+++|+.|++++|..++..+..+.++..++        +.+..+..+..+++|++|+|++|+|+ .+|.. ..+..
T Consensus       165 l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~  243 (305)
T d1xkua_         165 IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY  243 (305)
T ss_dssp             CCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSS
T ss_pred             cCcccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccC
Confidence            2223467899999999999988888888877665        55566778899999999999999998 55653 45778


Q ss_pred             cCCCccCCCC
Q 045166          213 FDNTSFDGNS  222 (305)
Q Consensus       213 l~~~~~~gNp  222 (305)
                      ++.+++++|.
T Consensus       244 L~~L~Ls~N~  253 (305)
T d1xkua_         244 IQVVYLHNNN  253 (305)
T ss_dssp             CCEEECCSSC
T ss_pred             CCEEECCCCc
Confidence            8888888885

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=3.8e-16  Score=115.24  Aligned_cols=102  Identities=16%  Similarity=0.209  Sum_probs=89.0

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      |+|||++|+++ .+| .+..+++|++|++++|+++. +|+.++.+++|++|++++|.++. +| .+  +.+++|++|+++
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~-l~-~~--~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-VD-GV--ANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC-CG-GG--TTCSSCCEEECC
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccCc-chhhhhhhhcccccccccccccc-cC-cc--ccccccCeEECC
Confidence            68999999998 565 48999999999999999986 88889999999999999999986 44 46  889999999999


Q ss_pred             CCcccccCCh-hhhhCcccchhccCcccccc
Q 045166           81 DNRFTGKLPS-NSFLCWNAMKIVNTSALRYL  110 (305)
Q Consensus        81 ~N~l~g~lp~-~~~~~l~~L~~L~l~~~~~~  110 (305)
                      +|+++ .+|. ..+..+++|+.+++++|...
T Consensus        74 ~N~i~-~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          74 NNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SSCCC-SSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCccC-CCCCchhhcCCCCCCEEECCCCcCC
Confidence            99998 5653 34788999999999987543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=2.4e-15  Score=131.88  Aligned_cols=71  Identities=20%  Similarity=0.333  Sum_probs=48.1

Q ss_pred             cccccEEEccCCccccccchhhcCCCCce---eee----cCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccC
Q 045166          147 PNILAGIILSNNRFDGAIPASIANLKGLQ---FSG----RIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFD  219 (305)
Q Consensus       147 ~~~L~~LdLs~N~l~g~~p~~~~~L~~L~---l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~  219 (305)
                      ++.++.|++++|++++..|  +..+++|+   +++    .+ +.+.++++|++|++++|++++.+| ...+..++.++++
T Consensus       306 ~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l-~~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~  381 (384)
T d2omza2         306 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV-SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLN  381 (384)
T ss_dssp             CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECC
T ss_pred             hcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCCC-hhHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCC
Confidence            5667778888888775332  44444443   333    23 358889999999999999997655 4456677777776


Q ss_pred             CC
Q 045166          220 GN  221 (305)
Q Consensus       220 gN  221 (305)
                      +|
T Consensus       382 ~N  383 (384)
T d2omza2         382 DQ  383 (384)
T ss_dssp             CE
T ss_pred             CC
Confidence            65

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=4.2e-15  Score=122.37  Aligned_cols=195  Identities=13%  Similarity=0.089  Sum_probs=125.3

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCC-CCCCCCCCCccEEeC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEE-PRTSCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~~~l~~L~~L~L   79 (305)
                      ++++.+++.++ .+|+.+.  +++++|++++|+|+...+..|.++++|++|++++|.+...++. .|  .++++++++++
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f--~~l~~l~~l~~   85 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF--SNLPKLHEIRI   85 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSE--ESCTTCCEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccc--ccccccccccc
Confidence            35778888887 6776553  5789999999999874444688999999999999988775544 34  67888898887


Q ss_pred             C-CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCcccccc-ccccccccCccccc-ccccccccEEEcc
Q 045166           80 S-DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYD-YSRTMNSKGRVMTY-NKIPNILAGIILS  156 (305)
Q Consensus        80 s-~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~L~~LdLs  156 (305)
                      . .|++. .++...|..+++|+.++++++........  . .......... .........+.... ......++.|+++
T Consensus        86 ~~~n~l~-~~~~~~~~~l~~L~~l~l~~~~l~~~~~~--~-~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~  161 (242)
T d1xwdc1          86 EKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDV--H-KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN  161 (242)
T ss_dssp             ECCTTCC-EECTTSEECCTTCCEEEEESCCCCSCCCC--T-TTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred             ccccccc-ccccccccccccccccccchhhhcccccc--c-ccccccccccccccccccccccccccccccccceeeecc
Confidence            5 46777 45556688899999999888543321110  0 0011111000 00000011111111 2223478889999


Q ss_pred             CCccccccchhhcCCCCce----e----eecCCc-cccCCCCCCEEeccCCcceecCCC
Q 045166          157 NNRFDGAIPASIANLKGLQ----F----SGRIPQ-QLAELTFLAFFNVSDNYLTGPIPQ  206 (305)
Q Consensus       157 ~N~l~g~~p~~~~~L~~L~----l----~g~ip~-~l~~l~~L~~L~Ls~N~l~g~ip~  206 (305)
                      +|+++ .++....+...+.    +    ...+|. .|.++++|++||+++|+++ .+|.
T Consensus       162 ~n~l~-~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~  218 (242)
T d1xwdc1         162 KNGIQ-EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS  218 (242)
T ss_dssp             SSCCC-EECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCS
T ss_pred             ccccc-ccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCH
Confidence            99999 5665555544443    1    124554 5889999999999999998 5554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=5.6e-15  Score=119.19  Aligned_cols=160  Identities=14%  Similarity=0.140  Sum_probs=116.1

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|++++|.++. ++ .+..+++|++|++++|++++ ++ .++.+++|++|++++|++++ +| .+  +.+++|+.|+++
T Consensus        49 ~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~-~l--~~l~~L~~L~l~  120 (210)
T d1h6ta2          49 DQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LS-SL--KDLKKLKSLSLE  120 (210)
T ss_dssp             CEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GG-GG--TTCTTCCEEECT
T ss_pred             cEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccccc-cc-cc--cccccccccccc
Confidence            468999999984 43 48899999999999999998 55 47899999999999999986 44 35  789999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCccc-ccccccccccEEEccCCc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVM-TYNKIPNILAGIILSNNR  159 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~LdLs~N~  159 (305)
                      +|.+. .++ . +..++.++.++++.|.......  ...++      .+....+..+.+.. .....+++|+.|||++|+
T Consensus       121 ~~~~~-~~~-~-l~~l~~l~~l~~~~n~l~~~~~--~~~l~------~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~  189 (210)
T d1h6ta2         121 HNGIS-DIN-G-LVHLPQLESLYLGNNKITDITV--LSRLT------KLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH  189 (210)
T ss_dssp             TSCCC-CCG-G-GGGCTTCCEEECCSSCCCCCGG--GGGCT------TCSEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred             ccccc-ccc-c-cccccccccccccccccccccc--ccccc------cccccccccccccccccccCCCCCCEEECCCCC
Confidence            99997 565 3 7888999999888754332111  11110      12222233332221 123458899999999999


Q ss_pred             cccccchhhcCCCCceeeecCCccccCCCCCCEEeccC
Q 045166          160 FDGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSD  197 (305)
Q Consensus       160 l~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~  197 (305)
                      ++ .+|                 .+..+++|++|+|++
T Consensus       190 i~-~l~-----------------~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         190 IS-DLR-----------------ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CC-BCG-----------------GGTTCTTCSEEEEEE
T ss_pred             CC-CCh-----------------hhcCCCCCCEEEccC
Confidence            98 333                 367788999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=5.2e-15  Score=118.33  Aligned_cols=160  Identities=19%  Similarity=0.178  Sum_probs=107.5

Q ss_pred             CCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCcccchh
Q 045166           22 SKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKI  101 (305)
Q Consensus        22 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~  101 (305)
                      +++..+.++.+.+++.++  ...++++++|++++|.++. ++ .+  ..+++|++|++++|+++ .++ . ++++++|++
T Consensus        18 ~~~i~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l~-~l--~~l~nL~~L~Ls~N~l~-~~~-~-l~~l~~L~~   88 (199)
T d2omxa2          18 AEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-ID-GV--EYLNNLTQINFSNNQLT-DIT-P-LKNLTKLVD   88 (199)
T ss_dssp             HHHHHHHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-CT-TG--GGCTTCCEEECCSSCCC-CCG-G-GTTCTTCCE
T ss_pred             HHHHHHHhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-cc-cc--ccCCCcCcCcccccccc-Ccc-c-ccCCccccc
Confidence            334455677788776443  3457888999999998875 32 35  67889999999999998 455 3 788889999


Q ss_pred             ccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccccccchhhcCCCCce---eee
Q 045166          102 VNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ---FSG  178 (305)
Q Consensus       102 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~---l~g  178 (305)
                      |++++|......                             ....++.|+.|++++|.+... + .+..+++|+   +++
T Consensus        89 L~l~~n~~~~~~-----------------------------~l~~l~~L~~L~l~~~~~~~~-~-~~~~l~~L~~L~l~~  137 (199)
T d2omxa2          89 ILMNNNQIADIT-----------------------------PLANLTNLTGLTLFNNQITDI-D-PLKNLTNLNRLELSS  137 (199)
T ss_dssp             EECCSSCCCCCG-----------------------------GGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCSEEECCS
T ss_pred             cccccccccccc-----------------------------ccccccccccccccccccccc-c-ccchhhhhHHhhhhh
Confidence            888875322110                             112367888999998888743 2 344455444   333


Q ss_pred             ---cCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCC
Q 045166          179 ---RIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNS  222 (305)
Q Consensus       179 ---~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp  222 (305)
                         ...+.+..+++|+.|++++|++++ ++....+.++..+++++|+
T Consensus       138 n~l~~~~~l~~~~~L~~L~l~~n~l~~-l~~l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         138 NTISDISALSGLTSLQQLNFSSNQVTD-LKPLANLTTLERLDISSNK  183 (199)
T ss_dssp             SCCCCCGGGTTCTTCSEEECCSSCCCC-CGGGTTCTTCCEEECCSSC
T ss_pred             hhhcccccccccccccccccccccccC-CccccCCCCCCEEECCCCC
Confidence               122357778888888888888875 3434566777777777774

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3e-15  Score=115.64  Aligned_cols=133  Identities=9%  Similarity=0.005  Sum_probs=97.0

Q ss_pred             hhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCc
Q 045166           17 SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCW   96 (305)
Q Consensus        17 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l   96 (305)
                      .+.++.++++|+|++|+|+. +|..+..+++|++|+|++|.++. ++ .+  ..+++|++|++++|+++ .+|..++..+
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~--~~l~~L~~L~ls~N~i~-~l~~~~~~~l   86 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-LD-GF--PLLRRLKTLLVNNNRIC-RIGEGLDQAL   86 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-EC-CC--CCCSSCCEEECCSSCCC-EECSCHHHHC
T ss_pred             hccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCc-cC-Cc--ccCcchhhhhccccccc-CCCccccccc
Confidence            46788899999999999987 67777889999999999999986 44 46  78999999999999999 7776767778


Q ss_pred             ccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccccccchhhcCCCCcee
Q 045166           97 NAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQF  176 (305)
Q Consensus        97 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~l  176 (305)
                      ++|+.|++++|.......                          ......+++|+.|++++|.++ ..|..-        
T Consensus        87 ~~L~~L~L~~N~i~~~~~--------------------------l~~l~~l~~L~~L~l~~N~i~-~~~~~r--------  131 (162)
T d1a9na_          87 PDLTELILTNNSLVELGD--------------------------LDPLASLKSLTYLCILRNPVT-NKKHYR--------  131 (162)
T ss_dssp             TTCCEEECCSCCCCCGGG--------------------------GGGGGGCTTCCEEECCSSGGG-GSTTHH--------
T ss_pred             cccccceecccccccccc--------------------------ccccccccccchhhcCCCccc-cccchH--------
Confidence            888888888754321000                          011223677888888888877 333210        


Q ss_pred             eecCCccccCCCCCCEEe
Q 045166          177 SGRIPQQLAELTFLAFFN  194 (305)
Q Consensus       177 ~g~ip~~l~~l~~L~~L~  194 (305)
                          +..+..+++|++||
T Consensus       132 ----~~~i~~lp~L~~LD  145 (162)
T d1a9na_         132 ----LYVIYKVPQVRVLD  145 (162)
T ss_dssp             ----HHHHHHCTTCSEET
T ss_pred             ----HHHHHHCCCcCeeC
Confidence                12345667777776

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=1.3e-14  Score=118.43  Aligned_cols=190  Identities=13%  Similarity=0.094  Sum_probs=106.8

Q ss_pred             EcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCc
Q 045166            4 LRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNR   83 (305)
Q Consensus         4 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~   83 (305)
                      +++.+++++..  .+..+.+|+.|++.+|.++. ++ .+..+++|++|++++|++++..|  +  .++++++++++++|.
T Consensus        25 ~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l--~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--L--KNLTKITELELSGNP   96 (227)
T ss_dssp             HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--G--TTCCSCCEEECCSCC
T ss_pred             HhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--c--ccccccccccccccc
Confidence            45556666543  34667788888888888876 43 47778888888888888776442  4  677888888888888


Q ss_pred             ccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcc-cccccccccccEEEccCCcccc
Q 045166           84 FTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRV-MTYNKIPNILAGIILSNNRFDG  162 (305)
Q Consensus        84 l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~LdLs~N~l~g  162 (305)
                      ++ .++ . +.++++|+.+.++.+.......+...  +      ......+...... .......++|+.|++++|.+++
T Consensus        97 ~~-~i~-~-l~~l~~L~~l~l~~~~~~~~~~~~~~--~------~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  165 (227)
T d1h6ua2          97 LK-NVS-A-IAGLQSIKTLDLTSTQITDVTPLAGL--S------NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD  165 (227)
T ss_dssp             CS-CCG-G-GTTCTTCCEEECTTSCCCCCGGGTTC--T------TCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             cc-ccc-c-ccccccccccccccccccccchhccc--c------chhhhhchhhhhchhhhhcccccccccccccccccc
Confidence            77 565 3 66777888777776433221111000  0      0000011111111 1112235567777777777663


Q ss_pred             ccchhhcCCCCce---eee----cCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCC
Q 045166          163 AIPASIANLKGLQ---FSG----RIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNT  216 (305)
Q Consensus       163 ~~p~~~~~L~~L~---l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~  216 (305)
                      ..+  +.++++|+   +++    .+| .++++++|++|++++|++++ +|....+..+..+
T Consensus       166 ~~~--l~~l~~L~~L~Ls~n~l~~l~-~l~~l~~L~~L~Ls~N~lt~-i~~l~~l~~L~~L  222 (227)
T d1h6ua2         166 LTP--LANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISD-VSPLANTSNLFIV  222 (227)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECTTSCCCB-CGGGTTCTTCCEE
T ss_pred             chh--hcccccceecccCCCccCCCh-hhcCCCCCCEEECcCCcCCC-CcccccCCCCCEE
Confidence            222  44444433   222    122 36677888888888888774 3333334444433

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=1e-14  Score=107.37  Aligned_cols=59  Identities=19%  Similarity=0.224  Sum_probs=50.0

Q ss_pred             CEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCC
Q 045166           25 EFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLP   89 (305)
Q Consensus        25 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp   89 (305)
                      ++|+|++|+++. ++ .+..+++|++|++++|+++. +|..+  +.+++|+.|++++|.++ .+|
T Consensus         1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~~-lp~~~--~~l~~L~~L~l~~N~i~-~l~   59 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLRA-LPPAL--AALRCLEVLQASDNALE-NVD   59 (124)
T ss_dssp             SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCCC-CCGGG--GGCTTCCEEECCSSCCC-CCG
T ss_pred             CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccCc-chhhh--hhhhccccccccccccc-ccC
Confidence            579999999986 55 48889999999999999985 67667  78999999999999998 565

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.5e-15  Score=116.12  Aligned_cols=103  Identities=13%  Similarity=0.095  Sum_probs=87.2

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|||++|+|+ .+|..+..+++|+.||+++|+|+. ++ .+..+++|++|++++|+++...+..+  ..+++|+.|+++
T Consensus        21 r~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~--~~l~~L~~L~L~   95 (162)
T d1a9na_          21 RELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLD--QALPDLTELILT   95 (162)
T ss_dssp             EEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHH--HHCTTCCEEECC
T ss_pred             cEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCcccc--ccccccccceec
Confidence            47999999998 567777889999999999999987 54 58899999999999999987544444  578999999999


Q ss_pred             CCcccccCCh-hhhhCcccchhccCccccc
Q 045166           81 DNRFTGKLPS-NSFLCWNAMKIVNTSALRY  109 (305)
Q Consensus        81 ~N~l~g~lp~-~~~~~l~~L~~L~l~~~~~  109 (305)
                      +|+++ .++. ..+..+++|+.+++++|..
T Consensus        96 ~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          96 NNSLV-ELGDLDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             SCCCC-CGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             ccccc-ccccccccccccccchhhcCCCcc
Confidence            99998 6654 3478899999999998644

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=6e-14  Score=122.76  Aligned_cols=176  Identities=20%  Similarity=0.211  Sum_probs=122.3

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ..+++++|.+++..|  +..+++|+.|++++|+++. +| .+..+++|+.|++++|.+++..+  +  ..+++|++|+++
T Consensus       200 ~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--~--~~~~~L~~L~l~  271 (384)
T d2omza2         200 ESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG-TLASLTNLTDLDLANNQISNLAP--L--SGLTKLTELKLG  271 (384)
T ss_dssp             SEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGG--G--TTCTTCSEEECC
T ss_pred             ceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-cc-hhhcccccchhccccCccCCCCc--c--cccccCCEeecc
Confidence            367899999886554  5678899999999999986 44 67888999999999999987543  4  678899999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCccc-ccccccccccEEEccCCc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVM-TYNKIPNILAGIILSNNR  159 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~LdLs~N~  159 (305)
                      +|+++ .++.  +..+..++.+.++.+.......  ... ..     ....+++..+.+.. .....+++|+.|++++|+
T Consensus       272 ~~~l~-~~~~--~~~~~~l~~l~~~~n~l~~~~~--~~~-~~-----~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~  340 (384)
T d2omza2         272 ANQIS-NISP--LAGLTALTNLELNENQLEDISP--ISN-LK-----NLTYLTLYFNNISDISPVSSLTKLQRLFFANNK  340 (384)
T ss_dssp             SSCCC-CCGG--GTTCTTCSEEECCSSCCSCCGG--GGG-CT-----TCSEEECCSSCCSCCGGGGGCTTCCEEECCSSC
T ss_pred             CcccC-CCCc--cccccccccccccccccccccc--cch-hc-----ccCeEECCCCCCCCCcccccCCCCCEEECCCCC
Confidence            99998 4552  6677778887777643321100  000 00     11122222222222 123458899999999999


Q ss_pred             cccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCc
Q 045166          160 FDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNY  199 (305)
Q Consensus       160 l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~  199 (305)
                      ++ .+| .+.++++|+        +++..|  +.++++|+.|+|++|.
T Consensus       341 l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         341 VS-DVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             CC-CCG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCEE
T ss_pred             CC-CCh-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCCc
Confidence            98 455 578777776        443333  7899999999999983

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.50  E-value=3.7e-14  Score=115.61  Aligned_cols=184  Identities=17%  Similarity=0.124  Sum_probs=117.1

Q ss_pred             CCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCcccch
Q 045166           21 CSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMK  100 (305)
Q Consensus        21 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~  100 (305)
                      ++++..++++.+.+++.+  .+..+.+|++|++.+|.++. ++ .+  ..+++|++|++++|+++ .++.  +..+++++
T Consensus        18 l~~~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l~-~l--~~l~~L~~L~ls~n~i~-~~~~--l~~l~~l~   88 (227)
T d1h6ua2          18 LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GV--QYLNNLIGLELKDNQIT-DLAP--LKNLTKIT   88 (227)
T ss_dssp             HHHHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TG--GGCTTCCEEECCSSCCC-CCGG--GTTCCSCC
T ss_pred             HHHHHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-ch-hH--hcCCCCcEeecCCceee-cccc--cccccccc
Confidence            444556678888888744  45678899999999999986 43 56  78999999999999998 4542  88899999


Q ss_pred             hccCcccccccccccCCCCcCCCccccccccccccccCcc-cccccccccccEEEccCCccccccc-hhhcCCCCceeee
Q 045166          101 IVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRV-MTYNKIPNILAGIILSNNRFDGAIP-ASIANLKGLQFSG  178 (305)
Q Consensus       101 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~LdLs~N~l~g~~p-~~~~~L~~L~l~g  178 (305)
                      .+++++|....-..  ....+      .+....+..+... .........+..++++++.+....+ ....++..|.+.+
T Consensus        89 ~l~~~~n~~~~i~~--l~~l~------~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~  160 (227)
T d1h6ua2          89 ELELSGNPLKNVSA--IAGLQ------SIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGN  160 (227)
T ss_dssp             EEECCSCCCSCCGG--GTTCT------TCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCS
T ss_pred             cccccccccccccc--ccccc------cccccccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccc
Confidence            99988753321110  01000      1111111111111 1122335677888888888774333 1122334444433


Q ss_pred             c---CCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCC
Q 045166          179 R---IPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNS  222 (305)
Q Consensus       179 ~---ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp  222 (305)
                      .   ....+.++++|++||+++|++++ +|....++.+..+++++|.
T Consensus       161 n~~~~~~~l~~l~~L~~L~Ls~n~l~~-l~~l~~l~~L~~L~Ls~N~  206 (227)
T d1h6ua2         161 AQVSDLTPLANLSKLTTLKADDNKISD-ISPLASLPNLIEVHLKNNQ  206 (227)
T ss_dssp             SCCCCCGGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECTTSC
T ss_pred             cccccchhhcccccceecccCCCccCC-ChhhcCCCCCCEEECcCCc
Confidence            1   22347889999999999999985 4544556777777788874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.41  E-value=1.8e-12  Score=111.65  Aligned_cols=91  Identities=20%  Similarity=0.264  Sum_probs=74.2

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|||++|.++ .+|+.   +++|++|++++|+|+. +|+.   +.+|+.|++++|+++. ++. +    .+.|++||++
T Consensus        41 ~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~-l----p~~L~~L~L~  106 (353)
T d1jl5a_          41 HELELNNLGLS-SLPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSD-L----PPLLEYLGVS  106 (353)
T ss_dssp             SEEECTTSCCS-CCCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCS-C----CTTCCEEECC
T ss_pred             CEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCcc-cccc---hhhhhhhhhhhcccch-hhh-h----cccccccccc
Confidence            47999999998 68853   5789999999999995 7865   4689999999999874 332 1    2469999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALR  108 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~  108 (305)
                      +|.+. .+|.  ++.+++|+.|+++++.
T Consensus       107 ~n~l~-~lp~--~~~l~~L~~L~l~~~~  131 (353)
T d1jl5a_         107 NNQLE-KLPE--LQNSSFLKIIDVDNNS  131 (353)
T ss_dssp             SSCCS-SCCC--CTTCTTCCEEECCSSC
T ss_pred             ccccc-cccc--hhhhccceeecccccc
Confidence            99998 7884  6789999999998753

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.6e-13  Score=103.07  Aligned_cols=102  Identities=14%  Similarity=-0.009  Sum_probs=87.8

Q ss_pred             EEEcccCccccccChhhhcCCCCCEEeccCc-ccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            2 FYLRNENTFLQRIPRSLINCSKLEFLGLGIN-QISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      .++.+++.+. ..|..+..+++|++|++++| .++..-+..|.++++|+.|+|++|+++...|..|  ..+++|++|||+
T Consensus        12 ~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f--~~l~~L~~L~Ls   88 (156)
T d2ifga3          12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF--HFTPRLSRLNLS   88 (156)
T ss_dssp             CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGG--GSCSCCCEEECC
T ss_pred             eEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccc--cccccccceecc
Confidence            4678888887 67888999999999999876 5887556789999999999999999998777777  889999999999


Q ss_pred             CCcccccCChhhhhCcccchhccCcccc
Q 045166           81 DNRFTGKLPSNSFLCWNAMKIVNTSALR  108 (305)
Q Consensus        81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~  108 (305)
                      +|+++ .+|.+.+..+ .|+.|++++|.
T Consensus        89 ~N~l~-~l~~~~~~~~-~l~~L~L~~Np  114 (156)
T d2ifga3          89 FNALE-SLSWKTVQGL-SLQELVLSGNP  114 (156)
T ss_dssp             SSCCS-CCCSTTTCSC-CCCEEECCSSC
T ss_pred             CCCCc-ccChhhhccc-cccccccCCCc
Confidence            99999 8998867655 69999998864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.4e-12  Score=105.53  Aligned_cols=77  Identities=16%  Similarity=0.163  Sum_probs=63.6

Q ss_pred             CEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCcccchhccC
Q 045166           25 EFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNT  104 (305)
Q Consensus        25 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l  104 (305)
                      +.++.+++.++. +|+.+.  +++++|++++|+++...+..|  .++++|++|++++|.+...+|...|.+++.++.+.+
T Consensus        11 ~~i~c~~~~l~~-iP~~l~--~~l~~L~Ls~n~i~~l~~~~f--~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1          11 RVFLCQESKVTE-IPSDLP--RNAIELRFVLTKLRVIQKGAF--SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             SEEEEESCSCSS-CCSCSC--SCCSEEEEESCCCCEECTTTT--TTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CEEEEeCCCCCC-cCCCCC--CCCCEEECcCCcCCccChhHh--hccchhhhhhhccccccceeeccccccccccccccc
Confidence            688888888885 887553  589999999999987555567  889999999999999986777777888999888876


Q ss_pred             cc
Q 045166          105 SA  106 (305)
Q Consensus       105 ~~  106 (305)
                      ..
T Consensus        86 ~~   87 (242)
T d1xwdc1          86 EK   87 (242)
T ss_dssp             EC
T ss_pred             cc
Confidence            54

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.34  E-value=1.7e-14  Score=115.19  Aligned_cols=44  Identities=25%  Similarity=0.181  Sum_probs=24.1

Q ss_pred             cccccEEEccCCccccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCcceecCC
Q 045166          147 PNILAGIILSNNRFDGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIP  205 (305)
Q Consensus       147 ~~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip  205 (305)
                      +++|+.||+++|+++ .++. +             ..+..+++|++|++++|+++...+
T Consensus       114 l~~L~~L~L~~N~i~-~~~~-~-------------~~l~~l~~L~~L~L~~N~l~~~~~  157 (198)
T d1m9la_         114 LVNLRVLYMSNNKIT-NWGE-I-------------DKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             HHHSSEEEESEEECC-CHHH-H-------------HHHTTTTTCSEEEECSSHHHHHHC
T ss_pred             cccccccccccchhc-cccc-c-------------ccccCCCccceeecCCCccccCcc
Confidence            455666666666665 2221 0             234556666666666666654433

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3.1e-12  Score=97.74  Aligned_cols=72  Identities=13%  Similarity=0.056  Sum_probs=54.9

Q ss_pred             hcCCCCCEEeccCcccccCcchhhcCCCCCCEEEccccc-ceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhh
Q 045166           19 INCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNI-FYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFL   94 (305)
Q Consensus        19 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~   94 (305)
                      ..+...+.++.+++.+.. .|..+..+++|++|++++|+ ++...+..|  .++++|+.|++++|+|+ .++.+.|.
T Consensus         5 C~c~~~~~l~c~~~~~~~-~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f--~~l~~L~~L~Ls~N~l~-~i~~~~f~   77 (156)
T d2ifga3           5 CCPHGSSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDL--RGLGELRNLTIVKSGLR-FVAPDAFH   77 (156)
T ss_dssp             SCCSSSSCEECCSSCCCT-TTTTSCSCSCCSEEECCSCSSCCEECGGGS--CSCCCCSEEECCSSCCC-EECTTGGG
T ss_pred             CCcCCCCeEEecCCCCcc-CcccccCccccCeeecCCCccccccCchhh--ccccccCcceeeccccC-Cccccccc
Confidence            445566778888888876 77788888899999997664 776555567  78899999999999998 66655444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.31  E-value=2.7e-11  Score=104.03  Aligned_cols=73  Identities=22%  Similarity=0.246  Sum_probs=52.1

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS   80 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls   80 (305)
                      ++|+|++|+|+ .+|+.   +.+|+.|++++|+++. +++.   .+.|++|++++|.+.. +|. +  +.+++|+.|+++
T Consensus        61 ~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~-l~~l---p~~L~~L~L~~n~l~~-lp~-~--~~l~~L~~L~l~  128 (353)
T d1jl5a_          61 ESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LPE-L--QNSSFLKIIDVD  128 (353)
T ss_dssp             SEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CCC-C--TTCTTCCEEECC
T ss_pred             CEEECCCCCCc-ccccc---hhhhhhhhhhhcccch-hhhh---cccccccccccccccc-ccc-h--hhhccceeeccc
Confidence            57999999998 77865   4577888888888775 4421   1457888888888764 453 3  567778888887


Q ss_pred             CCccc
Q 045166           81 DNRFT   85 (305)
Q Consensus        81 ~N~l~   85 (305)
                      +|.+.
T Consensus       129 ~~~~~  133 (353)
T d1jl5a_         129 NNSLK  133 (353)
T ss_dssp             SSCCS
T ss_pred             ccccc
Confidence            77665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.1e-12  Score=110.38  Aligned_cols=176  Identities=16%  Similarity=0.080  Sum_probs=84.5

Q ss_pred             cCCCCCEEeccCcccccC-cchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCC-cccccCChhhhhCcc
Q 045166           20 NCSKLEFLGLGINQISDT-FPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDN-RFTGKLPSNSFLCWN   97 (305)
Q Consensus        20 ~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N-~l~g~lp~~~~~~l~   97 (305)
                      ...+|++||++++.++.. ++..+..+++|++|+++++.++...+..+  +.+++|++|+++++ .++..--..+...++
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l--~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~  121 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL--AKNSNLVRLNLSGCSGFSEFALQTLLSSCS  121 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH--TTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHH--hcCCCCcCccccccccccccccchhhHHHH
Confidence            445666666666666532 23344566666666666666655444444  55666666666663 343111112234556


Q ss_pred             cchhccCccccccccccc--CCCCcCCCccccccccc--cccccCcccccccccccccEEEccCC-ccccccchhhcCCC
Q 045166           98 AMKIVNTSALRYLQDVLF--PYGQVSSNVLGTYDYSR--TMNSKGRVMTYNKIPNILAGIILSNN-RFDGAIPASIANLK  172 (305)
Q Consensus        98 ~L~~L~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~~LdLs~N-~l~g~~p~~~~~L~  172 (305)
                      +|++|+++++..+.....  ........+........  .+...+ ...+...+++|+.||+++| .+++..+..+.+++
T Consensus       122 ~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~-l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~  200 (284)
T d2astb2         122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD-LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN  200 (284)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHH-HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred             hccccccccccccccccchhhhcccccccchhhhccccccccccc-ccccccccccccccccccccCCCchhhhhhcccC
Confidence            666666665322211000  00000011111100000  000000 1112233678999999885 57766666666555


Q ss_pred             Cce---ee------ecCCccccCCCCCCEEeccCC
Q 045166          173 GLQ---FS------GRIPQQLAELTFLAFFNVSDN  198 (305)
Q Consensus       173 ~L~---l~------g~ip~~l~~l~~L~~L~Ls~N  198 (305)
                      +|+   ++      ......++++++|+.|+++++
T Consensus       201 ~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            554   22      222334566677777777654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=9.5e-12  Score=104.56  Aligned_cols=212  Identities=10%  Similarity=0.041  Sum_probs=117.6

Q ss_pred             CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeee-CCCCCCCCCCCccEEeC
Q 045166            1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGII-EEPRTSCGFSKLRIIDL   79 (305)
Q Consensus         1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~~~l~~L~~L~L   79 (305)
                      +.|||+++.+.......+.. ..+..+.++...+..... ......+|++||++++.++... +..+  ..+++|++|++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~--~~c~~L~~L~L   78 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGIL--SQCSKLQNLSL   78 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHH--TTBCCCSEEEC
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHH--HhCCCcccccc
Confidence            57999999886443333322 245677777777654322 3345678999999999886532 2334  67899999999


Q ss_pred             CCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccC-c-----ccccccccccccEE
Q 045166           80 SDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKG-R-----VMTYNKIPNILAGI  153 (305)
Q Consensus        80 s~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~L~~L  153 (305)
                      +++.++...+.. +..+++|+.|+++++..+++....  .+...+.  .+..+++.... +     ........+.|+.|
T Consensus        79 ~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~itd~~l~--~l~~~~~--~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L  153 (284)
T d2astb2          79 EGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQ--TLLSSCS--RLDELNLSWCFDFTEKHVQVAVAHVSETITQL  153 (284)
T ss_dssp             TTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHH--HHHHHCT--TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred             cccCCCcHHHHH-HhcCCCCcCccccccccccccccc--hhhHHHH--hccccccccccccccccchhhhcccccccchh
Confidence            999998666654 788899999999885443311100  0000000  11222222211 1     11111224567788


Q ss_pred             EccCC--ccccc-cchhhc---CCCCce------eeecCCccccCCCCCCEEeccC-CcceecCCC-CCCCCccCCCccC
Q 045166          154 ILSNN--RFDGA-IPASIA---NLKGLQ------FSGRIPQQLAELTFLAFFNVSD-NYLTGPIPQ-GKQFATFDNTSFD  219 (305)
Q Consensus       154 dLs~N--~l~g~-~p~~~~---~L~~L~------l~g~ip~~l~~l~~L~~L~Ls~-N~l~g~ip~-~~~~~~l~~~~~~  219 (305)
                      ++++.  .++.. +.....   +|+.|.      +++..+..+.++++|++|++++ +.++..... ..+.+.++.+++.
T Consensus       154 ~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~  233 (284)
T d2astb2         154 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF  233 (284)
T ss_dssp             ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred             hhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeee
Confidence            87754  33321 222222   333333      3334455677778888888887 355543221 1233444444454


Q ss_pred             CC
Q 045166          220 GN  221 (305)
Q Consensus       220 gN  221 (305)
                      |+
T Consensus       234 ~~  235 (284)
T d2astb2         234 GI  235 (284)
T ss_dssp             TS
T ss_pred             CC
Confidence            43

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.07  E-value=1e-12  Score=104.52  Aligned_cols=88  Identities=19%  Similarity=0.235  Sum_probs=56.2

Q ss_pred             ccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhh
Q 045166           13 RIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNS   92 (305)
Q Consensus        13 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~   92 (305)
                      .+|.++..+++|++|+|++|+|+. ++ .+..+++|++|+|++|.++. +|...  ..+++|+.|++++|+++ .++ . 
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~--~~~~~L~~L~l~~N~i~-~l~-~-  110 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLD--AVADTLEELWISYNQIA-SLS-G-  110 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS-CSSHH--HHHHHCCEEECSEEECC-CHH-H-
T ss_pred             hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccc-ccccc--ccccccccccccccccc-ccc-c-
Confidence            345567777777777777777765 44 36667777777777777653 44333  33456777777777776 443 2 


Q ss_pred             hhCcccchhccCcccc
Q 045166           93 FLCWNAMKIVNTSALR  108 (305)
Q Consensus        93 ~~~l~~L~~L~l~~~~  108 (305)
                      +..+++|+.|++++|.
T Consensus       111 ~~~l~~L~~L~L~~N~  126 (198)
T d1m9la_         111 IEKLVNLRVLYMSNNK  126 (198)
T ss_dssp             HHHHHHSSEEEESEEE
T ss_pred             ccccccccccccccch
Confidence            5666777777776653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.65  E-value=2.7e-09  Score=91.56  Aligned_cols=165  Identities=15%  Similarity=0.167  Sum_probs=105.9

Q ss_pred             CEEEcccCccc--c--ccC---------hhhhcCCCCCEEeccCcccccC----cchhhcCCCCCCEEEcccccceee--
Q 045166            1 MFYLRNENTFL--Q--RIP---------RSLINCSKLEFLGLGINQISDT----FPSWLGTLPKLNVLILRSNIFYGI--   61 (305)
Q Consensus         1 ~~L~Ls~N~l~--~--~~p---------~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~--   61 (305)
                      ++|++++|.+.  +  .+.         ........|+.+++++|.++..    +...+...+.|++|++++|.++..  
T Consensus       124 ~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~  203 (344)
T d2ca6a1         124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI  203 (344)
T ss_dssp             CEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHH
T ss_pred             hheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhccccccccccccccc
Confidence            46888888752  1  111         1234678899999999988642    333456788999999999998642  


Q ss_pred             ---eCCCCCCCCCCCccEEeCCCCccccc----CChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccc
Q 045166           62 ---IEEPRTSCGFSKLRIIDLSDNRFTGK----LPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTM  134 (305)
Q Consensus        62 ---~p~~~~~~~l~~L~~L~Ls~N~l~g~----lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (305)
                         +...+  ..+++|+.|++++|.++..    +. ..+...++|+.|++++|..-+....                   
T Consensus       204 ~~~l~~~l--~~~~~L~~L~Ls~N~i~~~g~~~L~-~~l~~~~~L~~L~Ls~n~i~~~g~~-------------------  261 (344)
T d2ca6a1         204 EHLLLEGL--AYCQELKVLDLQDNTFTHLGSSALA-IALKSWPNLRELGLNDCLLSARGAA-------------------  261 (344)
T ss_dssp             HHHHHTTG--GGCTTCCEEECCSSCCHHHHHHHHH-HHGGGCTTCCEEECTTCCCCHHHHH-------------------
T ss_pred             ccchhhhh--cchhhhccccccccccccccccccc-ccccccccchhhhhhcCccCchhhH-------------------
Confidence               23344  6788999999999998632    22 2356778899999888642211000                   


Q ss_pred             cccCcccccc-cccccccEEEccCCccccccchhhcCCCCceeeecCCccc-cCCCCCCEEeccCCccee
Q 045166          135 NSKGRVMTYN-KIPNILAGIILSNNRFDGAIPASIANLKGLQFSGRIPQQL-AELTFLAFFNVSDNYLTG  202 (305)
Q Consensus       135 ~~~~~~~~~~-~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~g~ip~~l-~~l~~L~~L~Ls~N~l~g  202 (305)
                         .+...+. .....|+.||+++|+++..-...+.            ..+ .++++|++|++++|++..
T Consensus       262 ---~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~------------~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         262 ---AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK------------TVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             ---HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH------------HHHHHHCTTCCEEECTTSBSCT
T ss_pred             ---HHHHHhhhccCCCCCEEECCCCcCChHHHHHHH------------HHHHccCCCCCEEECCCCcCCC
Confidence               0000000 0135699999999998743222221            223 257789999999999863

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.64  E-value=1.7e-09  Score=92.82  Aligned_cols=108  Identities=18%  Similarity=0.135  Sum_probs=67.0

Q ss_pred             CEEEcccCcccc---c-------cChhhhcCCCCCEEeccCcccccC----cchhhcCCCCCCEEEcccccceeeeCCCC
Q 045166            1 MFYLRNENTFLQ---R-------IPRSLINCSKLEFLGLGINQISDT----FPSWLGTLPKLNVLILRSNIFYGIIEEPR   66 (305)
Q Consensus         1 ~~L~Ls~N~l~~---~-------~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~   66 (305)
                      +.|+++++....   .       +.+.+..+++|+.|+|++|.++..    +...+...++|++|++++|.+...-...+
T Consensus        62 ~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l  141 (344)
T d2ca6a1          62 EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI  141 (344)
T ss_dssp             CEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHH
T ss_pred             CEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccc
Confidence            357777665431   1       223456788999999999988764    33345567899999999987642100000


Q ss_pred             -----------CCCCCCCccEEeCCCCcccccCC---hhhhhCcccchhccCcccc
Q 045166           67 -----------TSCGFSKLRIIDLSDNRFTGKLP---SNSFLCWNAMKIVNTSALR  108 (305)
Q Consensus        67 -----------~~~~l~~L~~L~Ls~N~l~g~lp---~~~~~~l~~L~~L~l~~~~  108 (305)
                                 .....+.|+.+++++|+++..--   ...+...+.|+.+++++|.
T Consensus       142 ~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~  197 (344)
T d2ca6a1         142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG  197 (344)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             cccccccccccccccCcccceeecccccccccccccccchhhhhhhhccccccccc
Confidence                       00245678888888888762211   1124556778888887754

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=5.1e-09  Score=79.93  Aligned_cols=84  Identities=19%  Similarity=0.127  Sum_probs=47.7

Q ss_pred             hhcCCCCCEEeccCcccccC--cchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCCh-----
Q 045166           18 LINCSKLEFLGLGINQISDT--FPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPS-----   90 (305)
Q Consensus        18 ~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~-----   90 (305)
                      +..+++|++|+|++|+|+..  ++..+..+++|+.|+|++|.++..-+-.+  .+..+|+.|++++|.+......     
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~--l~~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK--IKGLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHH--HTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhh--hhccccceeecCCCCcCcCcccchhHH
Confidence            34567777777777777652  23345566777777777777664221111  2334567777777777643321     


Q ss_pred             -hhhhCcccchhcc
Q 045166           91 -NSFLCWNAMKIVN  103 (305)
Q Consensus        91 -~~~~~l~~L~~L~  103 (305)
                       .++..+++|+.||
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence             2244566666665

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=3.4e-08  Score=87.06  Aligned_cols=84  Identities=17%  Similarity=0.089  Sum_probs=51.5

Q ss_pred             CEEEcccCccccc-cChhhhcCCCCCEEeccCccccc----CcchhhcCCCCCCEEEcccccceee----eCCCCCCCCC
Q 045166            1 MFYLRNENTFLQR-IPRSLINCSKLEFLGLGINQISD----TFPSWLGTLPKLNVLILRSNIFYGI----IEEPRTSCGF   71 (305)
Q Consensus         1 ~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~~~l   71 (305)
                      ++||+++|++++. +.+-+..++++++|+|++|.++.    .++..+..+++|++|||++|.++..    +...+. ...
T Consensus         5 ~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~-~~~   83 (460)
T d1z7xw1           5 QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ-TPS   83 (460)
T ss_dssp             EEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC-STT
T ss_pred             CEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh-cCC
Confidence            3677888887742 23445667777788888887763    2344556777777777777776421    111220 122


Q ss_pred             CCccEEeCCCCccc
Q 045166           72 SKLRIIDLSDNRFT   85 (305)
Q Consensus        72 ~~L~~L~Ls~N~l~   85 (305)
                      .+|+.|++++|+++
T Consensus        84 ~~L~~L~L~~n~it   97 (460)
T d1z7xw1          84 CKIQKLSLQNCCLT   97 (460)
T ss_dssp             CCCCEEECTTSCCB
T ss_pred             CCCCEEECCCCCcc
Confidence            45777777777776

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=7.6e-08  Score=84.70  Aligned_cols=83  Identities=20%  Similarity=0.194  Sum_probs=63.8

Q ss_pred             CEEEcccCcccc----ccChhhhcCCCCCEEeccCcccccC----cchhhc-CCCCCCEEEcccccceee----eCCCCC
Q 045166            1 MFYLRNENTFLQ----RIPRSLINCSKLEFLGLGINQISDT----FPSWLG-TLPKLNVLILRSNIFYGI----IEEPRT   67 (305)
Q Consensus         1 ~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~-~l~~L~~L~L~~N~l~~~----~p~~~~   67 (305)
                      ++|+|++|.++.    .++..+..+++|++|||++|.|+..    +...+. ...+|++|+|++|.++..    ++..+ 
T Consensus        30 ~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l-  108 (460)
T d1z7xw1          30 QVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL-  108 (460)
T ss_dssp             SEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHT-
T ss_pred             CEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchh-
Confidence            579999999873    4566778999999999999998642    222222 235799999999998743    33445 


Q ss_pred             CCCCCCccEEeCCCCccc
Q 045166           68 SCGFSKLRIIDLSDNRFT   85 (305)
Q Consensus        68 ~~~l~~L~~L~Ls~N~l~   85 (305)
                       ..+++|++|++++|.++
T Consensus       109 -~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         109 -RTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             -TSCTTCCEEECCSSBCH
T ss_pred             -hccccccccccccccch
Confidence             67899999999999997

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=9.7e-08  Score=72.56  Aligned_cols=75  Identities=20%  Similarity=0.168  Sum_probs=58.5

Q ss_pred             CEEEcccCccccc--cChhhhcCCCCCEEeccCcccccCcch-hhcCCCCCCEEEcccccceeeeCCC-------CCCCC
Q 045166            1 MFYLRNENTFLQR--IPRSLINCSKLEFLGLGINQISDTFPS-WLGTLPKLNVLILRSNIFYGIIEEP-------RTSCG   70 (305)
Q Consensus         1 ~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~-------~~~~~   70 (305)
                      ++|||++|+++..  ++..+..+++|+.|+|++|.|+. +++ .+....+|+.|++++|.+.......       +  ..
T Consensus        68 ~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~-l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~--~~  144 (162)
T d1koha1          68 LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR--ER  144 (162)
T ss_dssp             CCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC-GGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH--TT
T ss_pred             CEeeCCCccccCCchhHHHHhhCCcccccccccCcccc-chhhhhhhccccceeecCCCCcCcCcccchhHHHHHH--HH
Confidence            4689999999853  35667889999999999999997 444 4445668999999999997644321       2  46


Q ss_pred             CCCccEEe
Q 045166           71 FSKLRIID   78 (305)
Q Consensus        71 l~~L~~L~   78 (305)
                      +|+|+.||
T Consensus       145 ~P~L~~LD  152 (162)
T d1koha1         145 FPKLLRLD  152 (162)
T ss_dssp             STTCCEET
T ss_pred             CCCCCEEC
Confidence            89999987

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.55  E-value=1.2e-05  Score=60.86  Aligned_cols=67  Identities=10%  Similarity=0.060  Sum_probs=44.4

Q ss_pred             hcCCCCCEEeccCc-ccccC----cchhhcCCCCCCEEEcccccceeeeCCCCC--CCCCCCccEEeCCCCccc
Q 045166           19 INCSKLEFLGLGIN-QISDT----FPSWLGTLPKLNVLILRSNIFYGIIEEPRT--SCGFSKLRIIDLSDNRFT   85 (305)
Q Consensus        19 ~~l~~L~~L~L~~N-~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~--~~~l~~L~~L~Ls~N~l~   85 (305)
                      .+.++|++|+|+++ .++..    +-..+...+.|++|+|++|.+.......++  ....+.|+.|++++|.++
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            45688999999874 46432    223455678899999999888643222220  023467888999988887

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.39  E-value=5.3e-05  Score=57.16  Aligned_cols=103  Identities=17%  Similarity=0.106  Sum_probs=69.8

Q ss_pred             CEEEcccC-ccccc----cChhhhcCCCCCEEeccCcccccC----cchhhcCCCCCCEEEcccccceeee----CCCCC
Q 045166            1 MFYLRNEN-TFLQR----IPRSLINCSKLEFLGLGINQISDT----FPSWLGTLPKLNVLILRSNIFYGII----EEPRT   67 (305)
Q Consensus         1 ~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~----p~~~~   67 (305)
                      +.|+|+++ .++..    +-..+...++|++|+|++|.+...    +...+...+.|++|+|++|.++..-    -..+ 
T Consensus        18 ~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL-   96 (167)
T d1pgva_          18 KEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRST-   96 (167)
T ss_dssp             CEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHT-
T ss_pred             cEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHH-
Confidence            47899874 56532    344677789999999999999742    3334556789999999999987521    1123 


Q ss_pred             CCCCCCccEEeCCCCcccccCCh-------hhhhCcccchhccCcc
Q 045166           68 SCGFSKLRIIDLSDNRFTGKLPS-------NSFLCWNAMKIVNTSA  106 (305)
Q Consensus        68 ~~~l~~L~~L~Ls~N~l~g~lp~-------~~~~~l~~L~~L~l~~  106 (305)
                       ...++|+.|++++|.+. .+..       ..+..-++|+.|+++.
T Consensus        97 -~~n~sL~~L~l~~n~~~-~~g~~~~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_          97 -LVTQSIVEFKADNQRQS-VLGNQVEMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             -TTTCCCSEEECCCCSSC-CCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             -HhCCcCCEEECCCCcCC-CccHHHHHHHHHHHHhCCCccEeeCcC
Confidence             55678999999999766 3321       1233345666666543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.92  E-value=6.4e-05  Score=56.53  Aligned_cols=72  Identities=14%  Similarity=0.011  Sum_probs=45.7

Q ss_pred             cChhhhcCCCCCEEeccC-cccccC----cchhhcCCCCCCEEEcccccceeeeCCCC--CCCCCCCccEEeCCCCccc
Q 045166           14 IPRSLINCSKLEFLGLGI-NQISDT----FPSWLGTLPKLNVLILRSNIFYGIIEEPR--TSCGFSKLRIIDLSDNRFT   85 (305)
Q Consensus        14 ~p~~~~~l~~L~~L~L~~-N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~--~~~~l~~L~~L~Ls~N~l~   85 (305)
                      +.....+.++|++|++++ +.++..    +-..+...++|++|++++|.++...-..+  .....++++.+++++|.+.
T Consensus         9 l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_           9 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            344446678899999987 456432    22334567888889999887754211111  0034567888888888776

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.46  E-value=0.0011  Score=49.30  Aligned_cols=103  Identities=12%  Similarity=0.010  Sum_probs=68.1

Q ss_pred             CEEEccc-Cccccc----cChhhhcCCCCCEEeccCcccccC----cchhhcCCCCCCEEEcccccceeee----CCCCC
Q 045166            1 MFYLRNE-NTFLQR----IPRSLINCSKLEFLGLGINQISDT----FPSWLGTLPKLNVLILRSNIFYGII----EEPRT   67 (305)
Q Consensus         1 ~~L~Ls~-N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~----p~~~~   67 (305)
                      ++|+|++ +.++..    +-.++...++|++|++++|.++..    +-..+...+.++.+++++|.+....    -..+ 
T Consensus        20 ~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l-   98 (166)
T d1io0a_          20 EEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEAL-   98 (166)
T ss_dssp             CEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGG-
T ss_pred             cEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHH-
Confidence            4688887 556532    345566889999999999998753    2234456789999999999885421    1233 


Q ss_pred             CCCCCCccEEeC--CCCccccc----CChhhhhCcccchhccCcc
Q 045166           68 SCGFSKLRIIDL--SDNRFTGK----LPSNSFLCWNAMKIVNTSA  106 (305)
Q Consensus        68 ~~~l~~L~~L~L--s~N~l~g~----lp~~~~~~l~~L~~L~l~~  106 (305)
                       ...++|+.++|  +.|.+...    +. ..+...+.|+.|+++.
T Consensus        99 -~~~~~L~~l~L~l~~n~i~~~~~~~La-~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          99 -QSNTSLIELRIDNQSQPLGNNVEMEIA-NMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             -GGCSSCCEEECCCCSSCCCHHHHHHHH-HHHHHCSSCCEEECCC
T ss_pred             -HhCccccEEeeccCCCcCcHHHHHHHH-HHHHhCCCcCEEeCcC
Confidence             56678887555  56677521    22 2245667778877654