Citrus Sinensis ID: 045192

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
Protein Sequence
HPLFTSYPEADFWSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGRRKTRIIAIDALCWPGMKQYALKYLLRCVKFALEHLENTENY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccEEEEEcccccccccccEEEEccccccccccccccccccEEEEEccHHHHHHHHHccccccccEEEEEcEEEEEccccccccEEEcccccccccccccccccEEEEEEEcccccccccccHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHcccccccEEEEcccEEEcccccEEEEEEcHHHcccccccccccHHHEEEEHcHHHHHHHHHHHHcccccEEEEEccEEEEccccccccEEEcccccccccccccccccEEEEEEEcccccccHcccHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
hplftsypeadfwsksvlplcafevrsvgfiedqsadALEVDFankyigrgalhrgcvhEEIRFMINPELIAGMLFLasmgdneaIEIVGaerfcdykgytssfrfagdpadkkhfdsfgrrKTRIIAIDALCWPGMKQYALKYLLRCVKFALEhlenteny
Flexible Loop (DISEMBL)
hplftsypeadfwsksVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSsfrfagdpadkkhfdsfgrrkTRIIAIDALCWPGMKQYALKYLLRCVKFALEHLENTENY
Low Complexity Region (SEG)
HPLFTSYPEADFWSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGRRKTRIIAIDALCWPGMKQYALKYLLRCVKFALEHLENTENY
Disordered region (IsUnstruct)
*****SYPEADFWSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGRRKTRIIAIDALCWPGMKQYALKYLLRCVKFALEHL******
Disordered Region (DISOPRED)
*****SYPEADFWSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPAD*K**DSFGRRKTRIIAIDALCWPGMKQYALKYLLRCVKFALEHLENT***
Disordered Region (DISEMBL)
HPLFTSYPEADFWSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGRRKTRIIAIDALCWPGMKQYALKYLLRCVKFALEHLENTENY
Disordered Region (DISPRO)
***FTSYPEADFWSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGRRKTRIIAIDALCWPGMKQYALKYLLRCVKFALEHLEN****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
HPLFTSYPEADFWSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGRRKTRIIAIDALCWPGMKQYALKYLLRCVKFALEHLENTENY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	162	2.2.26 [Sep-21-2011]
Q9SKB3	548	Poly(ADP-ribose) glycohyd	yes	no	0.925	0.273	0.68	3e-52
Q8VYA1	522	Probable poly(ADP-ribose)	no	no	0.938	0.291	0.592	3e-45
O46043	768	Poly(ADP-ribose) glycohyd	yes	no	0.740	0.156	0.5	2e-26
O88622	969	Poly(ADP-ribose) glycohyd	yes	no	0.796	0.133	0.419	4e-22
Q86W56	976	Poly(ADP-ribose) glycohyd	yes	no	0.796	0.132	0.412	6e-22
O02776	977	Poly(ADP-ribose) glycohyd	yes	no	0.796	0.132	0.412	1e-21
Q9QYM2	972	Poly(ADP-ribose) glycohyd	yes	no	0.796	0.132	0.412	7e-21
Q867X0	781	Poly(ADP-ribose) glycohyd	yes	no	0.666	0.138	0.426	4e-16
Q9N5L4	485	Poly(ADP-ribose) glycohyd	no	no	0.617	0.206	0.405	6e-15

>sp|Q9SKB3|PARG1_ARATH Poly(ADP-ribose) glycohydrolase 1 OS=Arabidopsis thaliana GN=PARG1 PE=1 SV=2

 Score =  203 bits (517), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 102/150 (68%), Positives = 115/150 (76%)

Query: 4   FTSYPEADFWSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIR 63
            T+ P+ADFWSKS + LCAF+V S G IEDQ  +ALEVDFANKY+G G+L RGCV EEIR
Sbjct: 217 ITAAPDADFWSKSDVSLCAFKVHSFGLIEDQPDNALEVDFANKYLGGGSLSRGCVQEEIR 276

Query: 64  FMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGRRK 123
           FMINPELIAGMLFL  M DNEAIEIVGAERF  Y GY SSFRFAG+  DKK  D F RR+
Sbjct: 277 FMINPELIAGMLFLPRMDDNEAIEIVGAERFSCYTGYASSFRFAGEYIDKKAMDPFKRRR 336

Query: 124 TRIIAIDALCWPGMKQYALKYLLRCVKFAL 153
           TRI+AIDALC P M+ +    LLR +  AL
Sbjct: 337 TRIVAIDALCTPKMRHFKDICLLREINKAL 366

Poly(ADP-ribose) synthesized after DNA damage is only present transiently and is rapidly degraded by poly(ADP-ribose) glycohydrolase (By similarity). Involved in establishing period length of the circadian oscillator. May regulate post-translational poly(ADP-ribosyl)ation of an oscillator component.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 4EC: 3

>sp|Q8VYA1|PARG2_ARATH Probable poly(ADP-ribose) glycohydrolase 2 OS=Arabidopsis thaliana GN=PARG2 PE=2 SV=1

 Score =  180 bits (457), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 90/152 (59%), Positives = 106/152 (69%)

Query: 1   HPLFTSYPEADFWSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHE 60
           HP F SYP+AD W+ SV PLC+ E+ + G IEDQ  +ALEVDFA++Y G   L    + E
Sbjct: 225 HPHFVSYPKADSWANSVTPLCSIEIHTSGAIEDQPCEALEVDFADEYFGGLTLSYDTLQE 284

Query: 61  EIRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFG 120
           EIRF+INPELIAGM+FL  M  NEAIEIVG ERF  Y GY  SF++AGD  D K  D F 
Sbjct: 285 EIRFVINPELIAGMIFLPRMDANEAIEIVGVERFSGYTGYGPSFQYAGDYTDNKDLDIFR 344

Query: 121 RRKTRIIAIDALCWPGMKQYALKYLLRCVKFA 152
           RRKTR+IAIDA+  PGM QY L  L+R V  A
Sbjct: 345 RRKTRVIAIDAMPDPGMGQYKLDALIREVNKA 376

Poly(ADP-ribose) synthesized after DNA damage is only present transiently and is rapidly degraded by poly(ADP-ribose) glycohydrolase.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 3

>sp|O46043|PARG_DROME Poly(ADP-ribose) glycohydrolase OS=Drosophila melanogaster GN=Parg PE=1 SV=2

 Score =  118 bits (296), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/122 (50%), Positives = 79/122 (64%), Gaps = 2/122 (1%)

Query: 13  WSKSVLPL--CAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIRFMINPEL 70
           WS+S  PL      V + G IED+    L+VDFANKY+G G L  GCV EEIRF+I PEL
Sbjct: 336 WSQSAAPLGDVPLHVDAEGTIEDEGIGLLQVDFANKYLGGGVLGHGCVQEEIRFVICPEL 395

Query: 71  IAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGRRKTRIIAID 130
           + G LF   +   EA+ ++GAER+ +Y GY  SF ++G+  D    DS GRR+T I+AID
Sbjct: 396 LVGKLFTECLRPFEALVMLGAERYSNYTGYAGSFEWSGNFEDSTPRDSSGRRQTAIVAID 455

Query: 131 AL 132
           AL
Sbjct: 456 AL 457

Poly(ADP-ribose) synthesized after DNA damage is only present transiently and is rapidly degraded by poly(ADP-ribose) glycohydrolase. Poly(ADP-ribose) metabolism is required for maintenance of the normal function of neuronal cells.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 3

>sp|O88622|PARG_MOUSE Poly(ADP-ribose) glycohydrolase OS=Mus musculus GN=Parg PE=1 SV=2

 Score =  103 bits (258), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 55/131 (41%), Positives = 71/131 (54%), Gaps = 2/131 (1%)

Query: 4   FTSYPEADF--WSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
           FT     DF  W +   PL    V   G IE      L+VDFAN+++G G    G V EE
Sbjct: 690 FTRQSLEDFPEWERCEKPLTRLHVTYEGTIEGNGRGMLQVDFANRFVGGGVTGAGLVQEE 749

Query: 62  IRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGR 121
           IRF+INPELI   LF   +  NE + I G E++ +Y GY  ++R+A    D    D + R
Sbjct: 750 IRFLINPELIVSRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWARSHEDGSEKDDWQR 809

Query: 122 RKTRIIAIDAL 132
           R T I+AIDAL
Sbjct: 810 RCTEIVAIDAL 820

Poly(ADP-ribose) synthesized after DNA damage is only present transiently and is rapidly degraded by poly(ADP-ribose) glycohydrolase. Poly(ADP-ribose) metabolism may be required for maintenance of the normal function of neuronal cells.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 3

>sp|Q86W56|PARG_HUMAN Poly(ADP-ribose) glycohydrolase OS=Homo sapiens GN=PARG PE=1 SV=1

 Score =  103 bits (256), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 72/131 (54%), Gaps = 2/131 (1%)

Query: 4   FTSYPEADF--WSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
           FT     DF  W +   PL    V   G IE+     L+VDFAN+++G G    G V EE
Sbjct: 697 FTRQSLEDFPEWERCEKPLTRLHVTYEGTIEENGQGMLQVDFANRFVGGGVTSAGLVQEE 756

Query: 62  IRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGR 121
           IRF+INPELI   LF   +  NE + I G E++ +Y GY  ++R++    D    D + R
Sbjct: 757 IRFLINPELIISRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWSRSHEDGSERDDWQR 816

Query: 122 RKTRIIAIDAL 132
           R T I+AIDAL
Sbjct: 817 RCTEIVAIDAL 827

Poly(ADP-ribose) synthesized after DNA damage is only present transiently and is rapidly degraded by poly(ADP-ribose) glycohydrolase. Poly(ADP-ribose) metabolism may be required for maintenance of the normal function of neuronal cells.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 3

>sp|O02776|PARG_BOVIN Poly(ADP-ribose) glycohydrolase OS=Bos taurus GN=PARG PE=1 SV=1

 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 71/131 (54%), Gaps = 2/131 (1%)

Query: 4   FTSYPEADF--WSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
           FT     DF  W +    L    V   G IE      L+VDFAN+++G G    G V EE
Sbjct: 698 FTRQSLEDFPEWERCEKLLTRLHVTYEGTIEGNGQGMLQVDFANRFVGGGVTSAGLVQEE 757

Query: 62  IRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGR 121
           IRF+INPELI   LF   +  NE + I G E++ +Y GY  ++R+A    D+   D + R
Sbjct: 758 IRFLINPELIVSRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWARSHEDRSERDDWQR 817

Query: 122 RKTRIIAIDAL 132
           R T I+AIDAL
Sbjct: 818 RTTEIVAIDAL 828

Poly(ADP-ribose) synthesized after DNA damage is only present transiently and is rapidly degraded by poly(ADP-ribose) glycohydrolase. Poly(ADP-ribose) metabolism may be required for maintenance of the normal function of neuronal cells.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 3

>sp|Q9QYM2|PARG_RAT Poly(ADP-ribose) glycohydrolase OS=Rattus norvegicus GN=Parg PE=1 SV=1

 Score = 99.8 bits (247), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 54/131 (41%), Positives = 70/131 (53%), Gaps = 2/131 (1%)

Query: 4   FTSYPEADF--WSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
           FT     DF  W +   PL    V   G IE      L+VDFAN+++G G    G V EE
Sbjct: 693 FTRQSLEDFPEWERCDKPLTRLHVTYEGTIEGNGRGMLQVDFANRFVGGGVTGAGLVQEE 752

Query: 62  IRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGR 121
           IRF+INPELI   LF   +  NE + I G E++ +Y GY  ++R+A    D    D + R
Sbjct: 753 IRFLINPELIVSRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWARSHEDGSEKDDWQR 812

Query: 122 RKTRIIAIDAL 132
             T I+AIDAL
Sbjct: 813 CCTEIVAIDAL 823

Poly(ADP-ribose) synthesized after DNA damage is only present transiently and is rapidly degraded by poly(ADP-ribose) glycohydrolase. Poly(ADP-ribose) metabolism may be required for maintenance of the normal function of neuronal cells.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 3

>sp|Q867X0|PME3_CAEEL Poly(ADP-ribose) glycohydrolase pme-3 OS=Caenorhabditis elegans GN=pme-3 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 66/115 (57%), Gaps = 7/115 (6%)

Query: 30  FIEDQSADALEVDFANKYIGRGALHRGCVHEEIRFMINPELIAGMLFLASMGDNEAIEIV 89
            IED +A   +VDFAN+++G G L+ G V EEIRF++ PE++ GML    M   EAI IV
Sbjct: 525 LIED-TALCTQVDFANEHLGGGVLNHGSVQEEIRFLMCPEMMVGMLLCEKMKQLEAISIV 583

Query: 90  GAERFCDYKGYTSSFRFAG-DPADKKHF-----DSFGRRKTRIIAIDALCWPGMK 138
           GA  F  Y GY  + ++A   P   +       D FGR +   IAIDA+ + G K
Sbjct: 584 GAYVFSSYTGYGHTLKWAELQPNHSRQNTNEFRDRFGRLRVETIAIDAILFKGSK 638

Poly(ADP-ribose) synthesized after DNA damage is only present transiently and is rapidly degraded by poly(ADP-ribose) glycohydrolase. Poly(ADP-ribose) metabolism may be required for maintenance of the normal function of neuronal cells.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 3

>sp|Q9N5L4|PME4_CAEEL Poly(ADP-ribose) glycohydrolase pme-4 OS=Caenorhabditis elegans GN=pme-4 PE=2 SV=2

 Score = 80.1 bits (196), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 62/106 (58%), Gaps = 6/106 (5%)

Query: 33  DQSADALEVDFANKYIGRGALHRGCVHEEIRFMINPELIAGMLFLASMGDNEAIEIVGAE 92
           +++A   ++DFANK +G G L  G V EEIRFM+ PE++  +L      D EAI IVGA 
Sbjct: 244 EETALCTQIDFANKRLGGGVLKGGAVQEEIRFMMCPEMMVAILLNDVTQDLEAISIVGAY 303

Query: 93  RFCDYKGYTSSFRFAG-----DPADKKHF-DSFGRRKTRIIAIDAL 132
            F  Y GY+++ ++A         +   F D FGR +T  +AIDA+
Sbjct: 304 VFSSYTGYSNTLKWAKITPKHSAQNNNSFRDQFGRLQTETVAIDAV 349

Poly(ADP-ribose) synthesized after DNA damage is only present transiently and is rapidly degraded by poly(ADP-ribose) glycohydrolase. Poly(ADP-ribose) metabolism may be required for maintenance of the normal function of neuronal cells.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
255585301	553	poly(ADP-ribose) glycohydrolase, putativ	0.932	0.273	0.728	2e-58
224092826	527	predicted protein [Populus trichocarpa]	0.901	0.277	0.732	5e-56
224117682	548	predicted protein [Populus trichocarpa]	0.901	0.266	0.732	1e-54
357457741	529	Poly(ADP-ribose) glycohydrolase [Medicag	0.913	0.279	0.689	6e-54
356538602	547	PREDICTED: poly(ADP-ribose) glycohydrola	0.907	0.268	0.673	9e-54
147804948	549	hypothetical protein VITISV_004629 [Viti	0.932	0.275	0.682	3e-52
225434243	562	PREDICTED: poly(ADP-ribose) glycohydrola	0.932	0.268	0.682	3e-52
145330328	547	Poly(ADP-ribose) glycohydrolase 1 [Arabi	0.925	0.274	0.68	2e-50
18402797	548	Poly(ADP-ribose) glycohydrolase 1 [Arabi	0.925	0.273	0.68	2e-50
297826639	557	hypothetical protein ARALYDRAFT_482111 [	0.944	0.274	0.673	2e-50

>gi|255585301|ref|XP_002533349.1| poly(ADP-ribose) glycohydrolase, putative [Ricinus communis] gi|223526814|gb|EEF29034.1| poly(ADP-ribose) glycohydrolase, putative [Ricinus communis]

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 110/151 (72%), Positives = 123/151 (81%)

Query: 2   PLFTSYPEADFWSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
           P   SYP+ADFW++S +PLC FEV + GFIEDQ +DALEVDFANKY+G GALH GCV EE
Sbjct: 226 PECISYPKADFWNESAVPLCPFEVHNSGFIEDQISDALEVDFANKYLGGGALHSGCVQEE 285

Query: 62  IRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGR 121
           IRFMINPELIAGM FL  M DNEAIEIVGAERF DY GY SSFRF+GD  DK + DSFGR
Sbjct: 286 IRFMINPELIAGMFFLPCMEDNEAIEIVGAERFSDYTGYASSFRFSGDYVDKSNIDSFGR 345

Query: 122 RKTRIIAIDALCWPGMKQYALKYLLRCVKFA 152
            KTRI+AIDALC PG++QY LKYLLR +  A
Sbjct: 346 HKTRIVAIDALCSPGLRQYELKYLLREINKA 376

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092826|ref|XP_002309711.1| predicted protein [Populus trichocarpa] gi|222852614|gb|EEE90161.1| predicted protein [Populus trichocarpa]

 Score =  222 bits (565), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 107/146 (73%), Positives = 120/146 (82%)

Query: 2   PLFTSYPEADFWSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
           PL   YP+ADFW KSV+ LC  EV S GFIEDQS+ ALEVDF+NKY+G GALHRGCV EE
Sbjct: 227 PLCVFYPKADFWIKSVVSLCTLEVHSSGFIEDQSSGALEVDFSNKYLGGGALHRGCVQEE 286

Query: 62  IRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGR 121
           IRFMINPELIAGMLFL  M DNEAIEIVGAERF +Y GY SSFRF+GD  D++  DSF R
Sbjct: 287 IRFMINPELIAGMLFLPCMEDNEAIEIVGAERFSNYTGYASSFRFSGDHVDERDVDSFRR 346

Query: 122 RKTRIIAIDALCWPGMKQYALKYLLR 147
           R+TRI+AIDALC  GM+QY L+YLLR
Sbjct: 347 RRTRIVAIDALCNAGMEQYKLEYLLR 372

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117682|ref|XP_002331605.1| predicted protein [Populus trichocarpa] gi|222874001|gb|EEF11132.1| predicted protein [Populus trichocarpa]

 Score =  217 bits (552), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 107/146 (73%), Positives = 116/146 (79%)

Query: 2   PLFTSYPEADFWSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
           PL  SYPEADFWSKSV+ LC FEV S GFIEDQS  ALEVDFANKY+G GAL  GC+ EE
Sbjct: 228 PLCVSYPEADFWSKSVVSLCPFEVHSSGFIEDQSNGALEVDFANKYLGGGALRSGCLQEE 287

Query: 62  IRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGR 121
           IRFMINPELIAGMLFL  M DNEAIEIVGAERF +Y GY SSF F+GD  DK++ D F R
Sbjct: 288 IRFMINPELIAGMLFLPCMEDNEAIEIVGAERFSNYTGYASSFCFSGDHVDKRNVDGFRR 347

Query: 122 RKTRIIAIDALCWPGMKQYALKYLLR 147
            KTRI+AIDALC  GM+QY   YLLR
Sbjct: 348 CKTRIVAIDALCRAGMRQYKCTYLLR 373

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357457741|ref|XP_003599151.1| Poly(ADP-ribose) glycohydrolase [Medicago truncatula] gi|355488199|gb|AES69402.1| Poly(ADP-ribose) glycohydrolase [Medicago truncatula]

 Score =  215 bits (547), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 102/148 (68%), Positives = 116/148 (78%)

Query: 6   SYPEADFWSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIRFM 65
           SYP A FWS SV PLC FEV+S G IED S++ +EVDFAN+Y+G GAL RGCV EEIRFM
Sbjct: 230 SYPNASFWSTSVKPLCRFEVKSSGLIEDHSSETVEVDFANEYLGGGALRRGCVQEEIRFM 289

Query: 66  INPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGRRKTR 125
           I+PELIAGM+FL SM DNEAI+IVG ERF  Y GY SSFRF+GD  D K  D FGRRKTR
Sbjct: 290 ISPELIAGMIFLPSMADNEAIDIVGVERFSSYTGYASSFRFSGDYVDDKEVDPFGRRKTR 349

Query: 126 IIAIDALCWPGMKQYALKYLLRCVKFAL 153
           I+AIDALC PGM+QY  K+LLR +  A 
Sbjct: 350 IVAIDALCGPGMRQYREKFLLREINKAF 377

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538602|ref|XP_003537791.1| PREDICTED: poly(ADP-ribose) glycohydrolase 1-like [Glycine max]

 Score =  214 bits (545), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 99/147 (67%), Positives = 117/147 (79%)

Query: 6   SYPEADFWSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIRFM 65
           SYP+A+FWS S +PLC FEV S G IEDQS+ A+EVDFANKY+G GAL RGCV EEIRFM
Sbjct: 232 SYPDANFWSTSAIPLCRFEVHSSGLIEDQSSGAVEVDFANKYLGGGALGRGCVQEEIRFM 291

Query: 66  INPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGRRKTR 125
           ++PEL+ GMLFL +M DNEAIEIVG ERF  Y GY SSFRF+GD  D++  D+ GRRKTR
Sbjct: 292 VSPELMVGMLFLPAMADNEAIEIVGVERFSSYTGYASSFRFSGDYVDEREVDTLGRRKTR 351

Query: 126 IIAIDALCWPGMKQYALKYLLRCVKFA 152
           I+AIDALC PGM+QY   +LLR +  A
Sbjct: 352 IVAIDALCSPGMRQYRANFLLREINKA 378

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147804948|emb|CAN75808.1| hypothetical protein VITISV_004629 [Vitis vinifera]

 Score =  209 bits (533), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 103/151 (68%), Positives = 116/151 (76%)

Query: 2   PLFTSYPEADFWSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
           P   +YP+AD WSKS +PLC FEV   G IEDQS +ALEVDFAN+YIG GAL RGCV EE
Sbjct: 196 PFCVTYPKADLWSKSAVPLCHFEVHRSGLIEDQSKEALEVDFANRYIGGGALRRGCVQEE 255

Query: 62  IRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGR 121
           IRFMINPELIAGMLFL SM DNEAIE+VG ERF +Y GY SSF FAGD  DK+  D  GR
Sbjct: 256 IRFMINPELIAGMLFLPSMADNEAIEVVGPERFSNYTGYASSFHFAGDYVDKRDVDFMGR 315

Query: 122 RKTRIIAIDALCWPGMKQYALKYLLRCVKFA 152
           RKT++IAIDALC   M+QY L+ LLR +  A
Sbjct: 316 RKTKMIAIDALCDMRMRQYRLECLLREINKA 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434243|ref|XP_002280371.1| PREDICTED: poly(ADP-ribose) glycohydrolase 1 [Vitis vinifera] gi|296084375|emb|CBI24763.3| unnamed protein product [Vitis vinifera]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 103/151 (68%), Positives = 116/151 (76%)

Query: 2   PLFTSYPEADFWSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
           P   +YP+AD WSKS +PLC FEV   G IEDQS +ALEVDFAN+YIG GAL RGCV EE
Sbjct: 226 PFCVTYPKADLWSKSAVPLCHFEVHRSGLIEDQSKEALEVDFANRYIGGGALRRGCVQEE 285

Query: 62  IRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGR 121
           IRFMINPELIAGMLFL SM DNEAIE+VG ERF +Y GY SSF FAGD  DK+  D  GR
Sbjct: 286 IRFMINPELIAGMLFLPSMADNEAIEVVGPERFSNYTGYASSFHFAGDYVDKRDVDFMGR 345

Query: 122 RKTRIIAIDALCWPGMKQYALKYLLRCVKFA 152
           RKT++IAIDALC   M+QY L+ LLR +  A
Sbjct: 346 RKTKMIAIDALCDMRMRQYRLECLLREINKA 376

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145330328|ref|NP_001077989.1| Poly(ADP-ribose) glycohydrolase 1 [Arabidopsis thaliana] gi|330253504|gb|AEC08598.1| Poly(ADP-ribose) glycohydrolase 1 [Arabidopsis thaliana]

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 102/150 (68%), Positives = 115/150 (76%)

Query: 4   FTSYPEADFWSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIR 63
            T+ P+ADFWSKS + LCAF+V S G IEDQ  +ALEVDFANKY+G G+L RGCV EEIR
Sbjct: 217 ITAAPDADFWSKSDVSLCAFKVHSFGLIEDQPDNALEVDFANKYLGGGSLSRGCVQEEIR 276

Query: 64  FMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGRRK 123
           FMINPELIAGMLFL  M DNEAIEIVGAERF  Y GY SSFRFAG+  DKK  D F RR+
Sbjct: 277 FMINPELIAGMLFLPRMDDNEAIEIVGAERFSCYTGYASSFRFAGEYIDKKAMDPFKRRR 336

Query: 124 TRIIAIDALCWPGMKQYALKYLLRCVKFAL 153
           TRI+AIDALC P M+ +    LLR +  AL
Sbjct: 337 TRIVAIDALCTPKMRHFKDICLLREINKAL 366

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402797|ref|NP_565730.1| Poly(ADP-ribose) glycohydrolase 1 [Arabidopsis thaliana] gi|75206423|sp|Q9SKB3.2|PARG1_ARATH RecName: Full=Poly(ADP-ribose) glycohydrolase 1 gi|14701908|gb|AAK72256.1|AF394690_1 poly(ADP-ribose) glycohydrolase [Arabidopsis thaliana] gi|20197842|gb|AAD32285.2| putative poly(ADP-ribose) glycohydrolase [Arabidopsis thaliana] gi|330253503|gb|AEC08597.1| Poly(ADP-ribose) glycohydrolase 1 [Arabidopsis thaliana]

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 102/150 (68%), Positives = 115/150 (76%)

Query: 4   FTSYPEADFWSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIR 63
            T+ P+ADFWSKS + LCAF+V S G IEDQ  +ALEVDFANKY+G G+L RGCV EEIR
Sbjct: 217 ITAAPDADFWSKSDVSLCAFKVHSFGLIEDQPDNALEVDFANKYLGGGSLSRGCVQEEIR 276

Query: 64  FMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGRRK 123
           FMINPELIAGMLFL  M DNEAIEIVGAERF  Y GY SSFRFAG+  DKK  D F RR+
Sbjct: 277 FMINPELIAGMLFLPRMDDNEAIEIVGAERFSCYTGYASSFRFAGEYIDKKAMDPFKRRR 336

Query: 124 TRIIAIDALCWPGMKQYALKYLLRCVKFAL 153
           TRI+AIDALC P M+ +    LLR +  AL
Sbjct: 337 TRIVAIDALCTPKMRHFKDICLLREINKAL 366

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826639|ref|XP_002881202.1| hypothetical protein ARALYDRAFT_482111 [Arabidopsis lyrata subsp. lyrata] gi|297327041|gb|EFH57461.1| hypothetical protein ARALYDRAFT_482111 [Arabidopsis lyrata subsp. lyrata]

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 103/153 (67%), Positives = 116/153 (75%)

Query: 1   HPLFTSYPEADFWSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHE 60
           H   T+ P+ADFWSKS + LCAF+V S G IEDQ  +ALEVDFANKY+G G+L RGCV E
Sbjct: 223 HNSSTAAPDADFWSKSDVSLCAFKVHSFGLIEDQPDNALEVDFANKYLGGGSLSRGCVQE 282

Query: 61  EIRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFG 120
           EIRFMINPELIAGMLFL  M DNEAIEIVGAERF  Y GY SSFRFAG+  DKK  D F 
Sbjct: 283 EIRFMINPELIAGMLFLPRMDDNEAIEIVGAERFSCYTGYASSFRFAGEYIDKKAMDPFK 342

Query: 121 RRKTRIIAIDALCWPGMKQYALKYLLRCVKFAL 153
           RR+TRI+AIDALC P M+ +    LLR +  AL
Sbjct: 343 RRRTRIVAIDALCAPKMRHFKDICLLREINKAL 375

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
TAIR|locus:2045243	548	TEJ "Sanskrit for 'bright'" [A	0.919	0.271	0.684	4.7e-48
FB|FBgn0023216	768	Parg "Poly(ADP-ribose) glycohy	0.740	0.156	0.5	1.2e-24
DICTYBASE|DDB_G0277943	658	parG "poly (ADP-ribose) glycoh	0.759	0.186	0.447	1.2e-22
UNIPROTKB|F1SDW4	848	PARG "Uncharacterized protein"	0.796	0.152	0.419	5e-21
UNIPROTKB|J9NTQ1	893	PARG "Uncharacterized protein"	0.796	0.144	0.419	1.5e-20
UNIPROTKB|E2REC3	976	PARG "Uncharacterized protein"	0.796	0.132	0.419	1.7e-20
MGI|MGI:1347094	969	Parg "poly (ADP-ribose) glycoh	0.796	0.133	0.419	2.7e-20
UNIPROTKB|Q86W56	976	PARG "Poly(ADP-ribose) glycohy	0.796	0.132	0.412	2.8e-20
UNIPROTKB|F1MG95	977	PARG "Poly(ADP-ribose) glycohy	0.796	0.132	0.412	4.5e-20
UNIPROTKB|O02776	977	PARG "Poly(ADP-ribose) glycohy	0.796	0.132	0.412	5.8e-20

TAIR|locus:2045243 TEJ "Sanskrit for 'bright'" [Arabidopsis thaliana (taxid:3702)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 102/149 (68%), Positives = 115/149 (77%)

Query:     5 TSYPEADFWSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIRF 64
             T+ P+ADFWSKS + LCAF+V S G IEDQ  +ALEVDFANKY+G G+L RGCV EEIRF
Sbjct:   218 TAAPDADFWSKSDVSLCAFKVHSFGLIEDQPDNALEVDFANKYLGGGSLSRGCVQEEIRF 277

Query:    65 MINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGRRKT 124
             MINPELIAGMLFL  M DNEAIEIVGAERF  Y GY SSFRFAG+  DKK  D F RR+T
Sbjct:   278 MINPELIAGMLFLPRMDDNEAIEIVGAERFSCYTGYASSFRFAGEYIDKKAMDPFKRRRT 337

Query:   125 RIIAIDALCWPGMKQYALKYLLRCVKFAL 153
             RI+AIDALC P M+ +    LLR +  AL
Sbjct:   338 RIVAIDALCTPKMRHFKDICLLREINKAL 366

GO:0004649 "poly(ADP-ribose) glycohydrolase activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0090332 "stomatal closure" evidence=IMP

FB|FBgn0023216 Parg "Poly(ADP-ribose) glycohydrolase" [Drosophila melanogaster (taxid:7227)]

 Score = 291 (107.5 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 61/122 (50%), Positives = 79/122 (64%)

Query:    13 WSKSVLPL--CAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIRFMINPEL 70
             WS+S  PL      V + G IED+    L+VDFANKY+G G L  GCV EEIRF+I PEL
Sbjct:   336 WSQSAAPLGDVPLHVDAEGTIEDEGIGLLQVDFANKYLGGGVLGHGCVQEEIRFVICPEL 395

Query:    71 IAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGRRKTRIIAID 130
             + G LF   +   EA+ ++GAER+ +Y GY  SF ++G+  D    DS GRR+T I+AID
Sbjct:   396 LVGKLFTECLRPFEALVMLGAERYSNYTGYAGSFEWSGNFEDSTPRDSSGRRQTAIVAID 455

Query:   131 AL 132
             AL
Sbjct:   456 AL 457

GO:0004649 "poly(ADP-ribose) glycohydrolase activity" evidence=ISS;IMP;NAS

GO:0005975 "carbohydrate metabolic process" evidence=IMP

GO:0035065 "regulation of histone acetylation" evidence=IMP

GO:0006342 "chromatin silencing" evidence=IMP

GO:0005654 "nucleoplasm" evidence=IDA

GO:0051457 "maintenance of protein location in nucleus" evidence=IMP

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0009408 "response to heat" evidence=IMP

GO:0043484 "regulation of RNA splicing" evidence=IMP

GO:0030576 "Cajal body organization" evidence=IMP

GO:0036099 "female germ-line stem cell maintenance" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

DICTYBASE|DDB_G0277943 parG "poly (ADP-ribose) glycohydrolase" [Dictyostelium discoideum (taxid:44689)]

 Score = 271 (100.5 bits), Expect = 1.2e-22, P = 1.2e-22
 Identities = 55/123 (44%), Positives = 73/123 (59%)

Query:    13 WSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIRFMINPELIA 72
             W +S   L      + G IED     L+ DFANK +G G L  GCV EEIRF+INPEL+ 
Sbjct:   407 WERSTATLRDLTCFTEGTIEDNGIGMLQADFANKSLGGGVLGYGCVQEEIRFVINPELLV 466

Query:    73 GMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGRRKTRIIAIDAL 132
               LF + + +NE + I G++RF  Y GY  SF++ G   DK  +D  GRR T I+A+DA+
Sbjct:   467 SCLFTSILQENETVIITGSQRFSKYTGYGDSFQWNGPYIDKTPYDQMGRRLTSIVAMDAI 526

Query:   133 CWP 135
               P
Sbjct:   527 KLP 529

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0004649 "poly(ADP-ribose) glycohydrolase activity" evidence=IEA;ISS

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F1SDW4 PARG "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 258 (95.9 bits), Expect = 5.0e-21, P = 5.0e-21
 Identities = 55/131 (41%), Positives = 72/131 (54%)

Query:     4 FTSYPEADF--WSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
             FT     DF  W +   PL    V   G IE      L+VDFAN+++G G    G V EE
Sbjct:   697 FTRQSLEDFPEWERCEKPLTRLHVTYEGTIEGNGQGMLQVDFANRFVGGGVTSAGLVQEE 756

Query:    62 IRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGR 121
             IRF+INPELI   LF   +  NE + I G E++ +Y GY  ++R+A    D+   D + R
Sbjct:   757 IRFLINPELIVSRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWARSHEDRSERDDWQR 816

Query:   122 RKTRIIAIDAL 132
             R T I+AIDAL
Sbjct:   817 RGTEIVAIDAL 827

GO:0016045 "detection of bacterium" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004649 "poly(ADP-ribose) glycohydrolase activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

UNIPROTKB|J9NTQ1 PARG "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 254 (94.5 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 55/131 (41%), Positives = 72/131 (54%)

Query:     4 FTSYPEADF--WSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
             FT     DF  W +   PL    V   G IE      L+VDFAN+++G G    G V EE
Sbjct:   614 FTRQSLEDFPEWERCEKPLTRLHVTYEGTIEGNGQGMLQVDFANRFVGGGVTGAGLVQEE 673

Query:    62 IRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGR 121
             IRF+INPELI   LF   +  NE + I G E++ +Y GY  ++R+A    D    D++ R
Sbjct:   674 IRFLINPELIVSRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWARSHEDGSERDAWQR 733

Query:   122 RKTRIIAIDAL 132
             R T I+AIDAL
Sbjct:   734 RGTEIVAIDAL 744

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0004649 "poly(ADP-ribose) glycohydrolase activity" evidence=IEA

UNIPROTKB|E2REC3 PARG "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 254 (94.5 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 55/131 (41%), Positives = 72/131 (54%)

Query:     4 FTSYPEADF--WSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
             FT     DF  W +   PL    V   G IE      L+VDFAN+++G G    G V EE
Sbjct:   697 FTRQSLEDFPEWERCEKPLTRLHVTYEGTIEGNGQGMLQVDFANRFVGGGVTGAGLVQEE 756

Query:    62 IRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGR 121
             IRF+INPELI   LF   +  NE + I G E++ +Y GY  ++R+A    D    D++ R
Sbjct:   757 IRFLINPELIVSRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWARSHEDGSERDAWQR 816

Query:   122 RKTRIIAIDAL 132
             R T I+AIDAL
Sbjct:   817 RGTEIVAIDAL 827

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0004649 "poly(ADP-ribose) glycohydrolase activity" evidence=IEA

MGI|MGI:1347094 Parg "poly (ADP-ribose) glycohydrolase" [Mus musculus (taxid:10090)]

 Score = 252 (93.8 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 55/131 (41%), Positives = 71/131 (54%)

Query:     4 FTSYPEADF--WSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
             FT     DF  W +   PL    V   G IE      L+VDFAN+++G G    G V EE
Sbjct:   690 FTRQSLEDFPEWERCEKPLTRLHVTYEGTIEGNGRGMLQVDFANRFVGGGVTGAGLVQEE 749

Query:    62 IRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGR 121
             IRF+INPELI   LF   +  NE + I G E++ +Y GY  ++R+A    D    D + R
Sbjct:   750 IRFLINPELIVSRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWARSHEDGSEKDDWQR 809

Query:   122 RKTRIIAIDAL 132
             R T I+AIDAL
Sbjct:   810 RCTEIVAIDAL 820

GO:0000785 "chromatin" evidence=ISO

GO:0003682 "chromatin binding" evidence=ISO

GO:0004649 "poly(ADP-ribose) glycohydrolase activity" evidence=ISO;IMP

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=IMP

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IMP

GO:0008152 "metabolic process" evidence=IMP

GO:0016045 "detection of bacterium" evidence=IMP

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0045739 "positive regulation of DNA repair" evidence=ISO

UNIPROTKB|Q86W56 PARG "Poly(ADP-ribose) glycohydrolase" [Homo sapiens (taxid:9606)]

 Score = 252 (93.8 bits), Expect = 2.8e-20, P = 2.8e-20
 Identities = 54/131 (41%), Positives = 72/131 (54%)

Query:     4 FTSYPEADF--WSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
             FT     DF  W +   PL    V   G IE+     L+VDFAN+++G G    G V EE
Sbjct:   697 FTRQSLEDFPEWERCEKPLTRLHVTYEGTIEENGQGMLQVDFANRFVGGGVTSAGLVQEE 756

Query:    62 IRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGR 121
             IRF+INPELI   LF   +  NE + I G E++ +Y GY  ++R++    D    D + R
Sbjct:   757 IRFLINPELIISRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWSRSHEDGSERDDWQR 816

Query:   122 RKTRIIAIDAL 132
             R T I+AIDAL
Sbjct:   817 RCTEIVAIDAL 827

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0016045 "detection of bacterium" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0004649 "poly(ADP-ribose) glycohydrolase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|F1MG95 PARG "Poly(ADP-ribose) glycohydrolase" [Bos taurus (taxid:9913)]

 Score = 250 (93.1 bits), Expect = 4.5e-20, P = 4.5e-20
 Identities = 54/131 (41%), Positives = 71/131 (54%)

Query:     4 FTSYPEADF--WSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
             FT     DF  W +    L    V   G IE      L+VDFAN+++G G    G V EE
Sbjct:   698 FTRQSLEDFPEWERCEKLLTRLHVTYEGTIEGNGQGMLQVDFANRFVGGGVTSAGLVQEE 757

Query:    62 IRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGR 121
             IRF+INPELI   LF   +  NE + I G E++ +Y GY  ++R+A    D+   D + R
Sbjct:   758 IRFLINPELIVSRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWARSHEDRSERDDWQR 817

Query:   122 RKTRIIAIDAL 132
             R T I+AIDAL
Sbjct:   818 RSTEIVAIDAL 828

GO:0016045 "detection of bacterium" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004649 "poly(ADP-ribose) glycohydrolase activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

UNIPROTKB|O02776 PARG "Poly(ADP-ribose) glycohydrolase" [Bos taurus (taxid:9913)]

 Score = 249 (92.7 bits), Expect = 5.8e-20, P = 5.8e-20
 Identities = 54/131 (41%), Positives = 71/131 (54%)

Query:     4 FTSYPEADF--WSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
             FT     DF  W +    L    V   G IE      L+VDFAN+++G G    G V EE
Sbjct:   698 FTRQSLEDFPEWERCEKLLTRLHVTYEGTIEGNGQGMLQVDFANRFVGGGVTSAGLVQEE 757

Query:    62 IRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGR 121
             IRF+INPELI   LF   +  NE + I G E++ +Y GY  ++R+A    D+   D + R
Sbjct:   758 IRFLINPELIVSRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWARSHEDRSERDDWQR 817

Query:   122 RKTRIIAIDAL 132
             R T I+AIDAL
Sbjct:   818 RTTEIVAIDAL 828

GO:0005634 "nucleus" evidence=IEA

GO:0004649 "poly(ADP-ribose) glycohydrolase activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.2.1	LOW CONFIDENCE prediction!
3rd Layer	3.2.1.143	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VII.334.1 hypothetical protein (527 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	162
pfam05028	339	pfam05028, PARG_cat, Poly (ADP-ribose) glycohydrol	5e-73

>gnl|CDD|218390 pfam05028, PARG_cat, Poly (ADP-ribose) glycohydrolase (PARG)

 Score =  222 bits (567), Expect = 5e-73
 Identities = 89/150 (59%), Positives = 99/150 (66%), Gaps = 2/150 (1%)

Query: 6   SYPEADFWSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIRFM 65
           S  +   W KS   LC  EV + G IEDQ   AL+VDFANKY+G G L  GCV EEIRFM
Sbjct: 127 SPLDFPLWKKSTTNLCPVEVFTDGLIEDQGQGALQVDFANKYLGGGVLGHGCVQEEIRFM 186

Query: 66  INPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGRRKTR 125
           INPELI  MLF   + DNEAI IVGAERF  Y GY SSFRFAGD  DK   DSFGRR TR
Sbjct: 187 INPELIVSMLFCEVLEDNEAIIIVGAERFSSYTGYGSSFRFAGDYVDKTPRDSFGRRNTR 246

Query: 126 IIAIDALCW--PGMKQYALKYLLRCVKFAL 153
           I+AIDAL +  P  KQY  + +LR +  A 
Sbjct: 247 IVAIDALHFGDPYDKQYKQESILRELNKAF 276

Poly(ADP-ribose) glycohydrolase (PARG), is a ubiquitously expressed exo- and endoglycohydrolase which mediates oxidative and excitotoxic neuronal death. Length = 339

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	162
PF05028	340	PARG_cat: Poly (ADP-ribose) glycohydrolase (PARG);	100.0
KOG2064	517	consensus Poly(ADP-ribose) glycohydrolase [Signal	100.0
PF10021	148	DUF2263: Uncharacterized protein conserved in bact	81.95

>PF05028 PARG_cat: Poly (ADP-ribose) glycohydrolase (PARG); InterPro: IPR007724 Poly(ADP-ribose) glycohydrolase (PARG) is a ubiquitously expressed exo- and endoglycohydrolase which mediates oxidative and excitotoxic neuronal death []

Probab=100.00  E-value=1.2e-60  Score=415.85  Aligned_cols=152  Identities=52%  Similarity=0.814  Sum_probs=111.2

Q ss_pred             CCChhchhhcCCCccceEEEecCcccccCCCceEEEccccccCCcccCCCcccceeeeeeChhHHHhhhhcccCCCccEE
Q 045192            7 YPEADFWSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIRFMINPELIAGMLFLASMGDNEAI   86 (162)
Q Consensus         7 ~~~~~~W~~s~~~L~~~~v~~~g~IEd~~~~~lqVDFANk~iGGGvL~~G~vQEEI~F~i~PEllvs~Lf~e~L~dnEai   86 (162)
                      .++.++|++++.||++++|.++|+|||.+.+++|||||||+||||||++|||||||||++||||||+|||||+|+|||||
T Consensus       129 ~~~~~~w~~~~~~l~~~~v~~~g~IEd~~~~~lqVDFANk~IGGGvL~~g~vQEEI~F~~~PEllvs~Lf~e~L~dnEai  208 (340)
T PF05028_consen  129 WLSIPDWSNSTKPLCPVEVFHDGRIEDSGSGCLQVDFANKYIGGGVLGSGCVQEEIRFMICPELLVSMLFCEKLEDNEAI  208 (340)
T ss_dssp             -SSB--CCC---B---EEEESSS-HHHHTTTSEEEEEE-SSTTTTTTTT--SHHHHHHHHSGGGGGHHHHB----TTEEE
T ss_pred             ccchhhHHhcccccCCceeecCCccccCCCCcEEEEEeccccCCccccCCcchhheeeeeCHHHHhHHHcCccCCCCcEE
Confidence            46778899999999999999999999998899999999999999999999999999999999999999999999999999


Q ss_pred             EEeCceeeeeeccccceeeEcCCCCCCccccccCccceEEEEEecCCC--CCcccCchhhhHHHHHHHHccccc
Q 045192           87 EIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGRRKTRIIAIDALCW--PGMKQYALKYLLRCVKFALEHLEN  158 (162)
Q Consensus        87 ~I~Gae~~s~y~GY~~sf~~~g~~~d~~~~d~~~~~~~~ivaiDAl~~--~~~~Qf~~~~i~REL~KAy~gF~~  158 (162)
                      +|+|++|||+|+||++||+|+|++.|++++|.++|++++||||||+.|  ++..||++++|+|||+|||+||+.
T Consensus       209 ~I~Ga~~ys~y~Gy~~~f~~~~~~~d~~~~d~~~~~~~~ivaiDAl~f~~~~~~Q~~~~~i~REl~Kay~gF~~  282 (340)
T PF05028_consen  209 IITGAERYSNYTGYGRSFRFAGDYNDPTPRDSWGRRKTNIVAIDALDFSENGSRQYKPENIDRELNKAYSGFSS  282 (340)
T ss_dssp             EEE-----EEEESSGGG-EEEEE------B-TTS-BS-EEEEEE-----SSCCGGGSHHHHHHHHHHHHHHH--
T ss_pred             EEeCceeEEeecCcccceeeccccCCcchhhhhhhhcceEEEEeChhhccChhhhhCHHHHHHHHHHHHhhhhc
Confidence            999999999999999999999999999999999999999999999998  478899999999999999999994

; GO: 0004649 poly(ADP-ribose) glycohydrolase activity, 0005975 carbohydrate metabolic process; PDB: 4FC2_D 3UEL_C 3UEK_A.

>KOG2064 consensus Poly(ADP-ribose) glycohydrolase [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-43  Score=319.14  Aligned_cols=150  Identities=47%  Similarity=0.682  Sum_probs=140.6

Q ss_pred             ChhchhhcCCCccceEEEecCcccccCCCceEEEccccccCCcccCCCcccceeeeeeChhHHHhhhhcccCCCccEEEE
Q 045192            9 EADFWSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIRFMINPELIAGMLFLASMGDNEAIEI   88 (162)
Q Consensus         9 ~~~~W~~s~~~L~~~~v~~~g~IEd~~~~~lqVDFANk~iGGGvL~~G~vQEEI~F~i~PEllvs~Lf~e~L~dnEai~I   88 (162)
                      |.++|++++..+++++++-+|.||+++..++|||||||++|||||++|||||||||+|||||+++|||+|+|+|+|||.|
T Consensus       233 d~efwk~~~~~~~pv~~~~~~~~~e~~~~~tqvDFANk~LGGGvL~~GcVQEEIRFmi~PEl~vgmLflp~med~EAi~i  312 (517)
T KOG2064|consen  233 DIEFWKKSSTNLLPVVVHFDGMIEEEGALATQVDFANKYLGGGVLSHGCVQEEIRFMICPELIVGMLFLPKMEDLEAIEI  312 (517)
T ss_pred             hhhhhhhcccCCCceEEecccceecccccccccchhhhhcCCCcccCccchhhhhhccCHHHHHHHHhccccchhhhHHh
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCceeeeeecc-ccceeeEcCC-----CCC-CccccccCc--cceEEEEEecCCCCC------cccCchhhhHHHHHHHH
Q 045192           89 VGAERFCDYKG-YTSSFRFAGD-----PAD-KKHFDSFGR--RKTRIIAIDALCWPG------MKQYALKYLLRCVKFAL  153 (162)
Q Consensus        89 ~Gae~~s~y~G-Y~~sf~~~g~-----~~d-~~~~d~~~~--~~~~ivaiDAl~~~~------~~Qf~~~~i~REL~KAy  153 (162)
                      .||+|||.|+| |+.+++|.|.     ..+ ...||+++|  +.+..+||||+.|.+      ..|+....+.||++||+
T Consensus       313 vGAerfS~YTG~y~~~~kw~~~i~~~~~~~~~~~Rd~~lrs~lqt~ti~iDal~~~g~~~~~h~~ql~d~~~~rE~~ka~  392 (517)
T KOG2064|consen  313 VGAERFSSYTGHYSPTKKWIGAIDALRRPNSNGFRDPSLRSALQTVTIAIDALLFVGSPLPCHYKQLNDVKMVREPCKAS  392 (517)
T ss_pred             hhheeccccccccCccchhhhccHhhhCCCCccccchhhhhhhhhhhhhhhhHhhcCCcchhhhhhhhhhHHhhhhhhhh
Confidence            99999999999 9999999997     222 367899999  999999999999942      46899999999999999


Q ss_pred             ccccc
Q 045192          154 EHLEN  158 (162)
Q Consensus       154 ~gF~~  158 (162)
                      .||-+
T Consensus       393 i~f~~  397 (517)
T KOG2064|consen  393 IGFPS  397 (517)
T ss_pred             cCccc
Confidence            99965

>PF10021 DUF2263: Uncharacterized protein conserved in bacteria (DUF2263); InterPro: IPR019261 This domain, found in various hypothetical bacterial and eukaryotic proteins, has no known function

Probab=81.95  E-value=0.83  Score=35.89  Aligned_cols=31  Identities=23%  Similarity=0.216  Sum_probs=20.4

Q ss_pred             CCceEEEcccc-ccCCcccCCCcccceeeeee
Q 045192           36 ADALEVDFANK-YIGRGALHRGCVHEEIRFMI   66 (162)
Q Consensus        36 ~~~lqVDFANk-~iGGGvL~~G~vQEEI~F~i   66 (162)
                      .....+.|||. ..|||++.+...|||-++--
T Consensus        76 ~~v~VLNfAs~~~PGGG~~~Ga~AQEE~Lcr~  107 (148)
T PF10021_consen   76 GKVAVLNFASAKNPGGGFLNGARAQEESLCRR  107 (148)
T ss_dssp             S--EEEEE--SSSTTTTGGGT--SHHHHHHHH
T ss_pred             CCeEEEeccCcCCCCCCcccCcchhHHHHHhh
Confidence            34688999995 68999999989999987643

; PDB: 3SIJ_A 3SIG_A 3SII_A 3SIH_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	162
4b1g_A	531	Structure Of Unliganded Human Parg Catalytic Domain		4e-23
4b1j_A	531	Structure Of Human Parg Catalytic Domain In Complex		5e-23
4b1h_A	531	Structure Of Human Parg Catalytic Domain In Complex		5e-23
4a0d_A	531	Structure Of Unliganded Human Parg Catalytic Domain		5e-23
4fc2_A	521	Crystal Structure Of Mouse Poly(Adp-Ribose) Glycohy		5e-23
3uek_A	588	Crystal Structure Of The Catalytic Domain Of Rat Po		1e-21
4epp_A	477	Canonical Poly(Adp-Ribose) Glycohydrolase From Tetr		3e-12
4epq_A	477	Canonical Poly(Adp-Ribose) Glycohydrolase Rbpi Inhi		4e-12

>pdb|4B1G|A Chain A, Structure Of Unliganded Human Parg Catalytic Domain Length = 531

Iteration: 1
 Score =  103 bits (257), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Query: 4   FTSYPEADF--WSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
           FT     DF  W +   PL    V   G IE+     L+VDFAN+++G G    G V EE
Sbjct: 252 FTRQSLEDFPEWERCEKPLTRLHVTYEGTIEENGQGXLQVDFANRFVGGGVTSAGLVQEE 311
Query: 62  IRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGR 121
           IRF+INPELI   LF   +  NE + I G E++ +Y GY  ++R++    D    D + R
Sbjct: 312 IRFLINPELIISRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWSRSHEDGSERDDWQR 371
Query: 122 RKTRIIAIDAL 132
           R T I+AIDAL
Sbjct: 372 RCTEIVAIDAL 382

>pdb|4B1J|A Chain A, Structure Of Human Parg Catalytic Domain In Complex With Adp-hpd Length = 531

Iteration: 1
 Score =  103 bits (257), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Query: 4   FTSYPEADF--WSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
           FT     DF  W +   PL    V   G IE+     L+VDFAN+++G G    G V EE
Sbjct: 252 FTRQSLEDFPEWERCEKPLTRLHVTYEGTIEENGQGMLQVDFANRFVGGGVTSAGLVQEE 311
Query: 62  IRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGR 121
           IRF+INPELI   LF   +  NE + I G E++ +Y GY  ++R++    D    D + R
Sbjct: 312 IRFLINPELIISRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWSRSHEDGSERDDWQR 371
Query: 122 RKTRIIAIDAL 132
           R T I+AIDAL
Sbjct: 372 RCTEIVAIDAL 382

>pdb|4B1H|A Chain A, Structure Of Human Parg Catalytic Domain In Complex With Adp-ribose Length = 531

Iteration: 1
 Score =  103 bits (257), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Query: 4   FTSYPEADF--WSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
           FT     DF  W +   PL    V   G IE+     L+VDFAN+++G G    G V EE
Sbjct: 252 FTRQSLEDFPEWERCEKPLTRLHVTYEGTIEENGQGMLQVDFANRFVGGGVTSAGLVQEE 311
Query: 62  IRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGR 121
           IRF+INPELI   LF   +  NE + I G E++ +Y GY  ++R++    D    D + R
Sbjct: 312 IRFLINPELIISRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWSRSHEDGSERDDWQR 371
Query: 122 RKTRIIAIDAL 132
           R T I+AIDAL
Sbjct: 372 RCTEIVAIDAL 382

>pdb|4A0D|A Chain A, Structure Of Unliganded Human Parg Catalytic Domain Length = 531

Iteration: 1
 Score =  103 bits (257), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Query: 4   FTSYPEADF--WSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
           FT     DF  W +   PL    V   G IE+     L+VDFAN+++G G    G V EE
Sbjct: 252 FTRQSLEDFPEWERCEKPLTRLHVTYEGTIEENGQGMLQVDFANRFVGGGVTSAGLVQEE 311
Query: 62  IRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGR 121
           IRF+INPELI   LF   +  NE + I G E++ +Y GY  ++R++    D    D + R
Sbjct: 312 IRFLINPELIISRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWSRSHEDGSERDDWQR 371
Query: 122 RKTRIIAIDAL 132
           R T I+AIDAL
Sbjct: 372 RCTEIVAIDAL 382

>pdb|4FC2|A Chain A, Crystal Structure Of Mouse Poly(Adp-Ribose) Glycohydrolase (Parg) Catalytic Domain Length = 521

Iteration: 1
 Score =  103 bits (256), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 71/131 (54%), Gaps = 2/131 (1%)
Query: 4   FTSYPEADF--WSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
           FT     DF  W +   PL    V   G IE      L+VDFAN+++G G    G V EE
Sbjct: 252 FTRQSLEDFPEWERCEKPLTRLHVTYEGTIEGNGRGXLQVDFANRFVGGGVTGAGLVQEE 311
Query: 62  IRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGR 121
           IRF+INPELI   LF   +  NE + I G E++ +Y GY  ++R+A    D    D + R
Sbjct: 312 IRFLINPELIVSRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWARSHEDGSEKDDWQR 371
Query: 122 RKTRIIAIDAL 132
           R T I+AIDAL
Sbjct: 372 RCTEIVAIDAL 382

>pdb|3UEK|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat Poly (Adp-Ribose) Glycohydrolase Length = 588

Iteration: 1
 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 70/131 (53%), Gaps = 2/131 (1%)
Query: 4   FTSYPEADF--WSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
           FT     DF  W +   PL    V   G IE      L+VDFAN+++G G    G V EE
Sbjct: 309 FTRQSLEDFPEWERCDKPLTRLHVTYEGTIEGNGRGMLQVDFANRFVGGGVTGAGLVQEE 368
Query: 62  IRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGR 121
           IRF+INPELI   LF   +  NE + I G E++ +Y GY  ++R+A    D    D + R
Sbjct: 369 IRFLINPELIVSRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWARSHEDGSEKDDWQR 428
Query: 122 RKTRIIAIDAL 132
             T I+AIDAL
Sbjct: 429 CCTEIVAIDAL 439

>pdb|4EPP|A Chain A, Canonical Poly(Adp-Ribose) Glycohydrolase From Tetrahymena Thermophila. Length = 477

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 71/123 (57%), Gaps = 6/123 (4%)
Query: 17  VLPLCAFEVRSVGFIEDQSAD----ALEVDFANKYIGRGALHRGCVHEEIRFMINPELIA 72
           V  L A ++++V   +D+  +     L+VDFAN  IG G L  G V EEIRF + PE++ 
Sbjct: 228 VDKLKAIKLKNVQLTDDKLIEDFPGTLQVDFANCDIGGGILGNGLVQEEIRFCVCPEMLV 287
Query: 73  GML-FLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGRRKTRIIAIDA 131
            +L F  SM  NE I + G +++ DY+GY++SFRF      K         +T I+AIDA
Sbjct: 288 SLLVFDQSMEANEVIIMKGIKQYSDYQGYSNSFRFVKMGNSKIQKQKRNNPQT-ILAIDA 346
Query: 132 LCW 134
           LC+
Sbjct: 347 LCF 349

>pdb|4EPQ|A Chain A, Canonical Poly(Adp-Ribose) Glycohydrolase Rbpi Inhibitor Complex From Tetrahymena Thermophila Length = 477

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 71/123 (57%), Gaps = 6/123 (4%)
Query: 17  VLPLCAFEVRSVGFIEDQSAD----ALEVDFANKYIGRGALHRGCVHEEIRFMINPELIA 72
           V  L A ++++V   +D+  +     L+VDFAN  IG G L  G V EEIRF + PE++ 
Sbjct: 228 VDKLKAIKLKNVQLTDDKLIEDFPGTLQVDFANCDIGGGILGNGLVQEEIRFCVCPEMLV 287
Query: 73  GML-FLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGRRKTRIIAIDA 131
            +L F  SM  NE I + G +++ DY+GY++SFRF      K         +T I+AIDA
Sbjct: 288 SLLVFDQSMEANEVIIMKGIKQYSDYQGYSNSFRFVKMGNSKIQKQKRTNPQT-ILAIDA 346
Query: 132 LCW 134
           LC+
Sbjct: 347 LCF 349

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	162
4fc2_A	521	Poly(ADP-ribose) glycohydrolase; mouse, PArg; 1.91	8e-46
3uek_A	588	Poly(ADP-ribose) glycohydrolase; mammalian PArg, m	1e-45
4epp_A	477	Poly(ADP-ribose) glycohydrolase; marco domain, PAR	7e-35

>4fc2_A Poly(ADP-ribose) glycohydrolase; mouse, PArg; 1.91A {Mus musculus} Length = 521

 Score =  155 bits (393), Expect = 8e-46
 Identities = 54/144 (37%), Positives = 76/144 (52%), Gaps = 1/144 (0%)

Query: 5   TSYPEADFWSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIRF 64
            S  +   W +   PL    V   G IE      L+VDFAN+++G G    G V EEIRF
Sbjct: 255 QSLEDFPEWERCEKPLTRLHVTYEGTIEGNGRGMLQVDFANRFVGGGVTGAGLVQEEIRF 314

Query: 65  MINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGRRKT 124
           +INPELI   LF   +  NE + I G E++ +Y GY  ++R+A    D    D + RR T
Sbjct: 315 LINPELIVSRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWARSHEDGSEKDDWQRRCT 374

Query: 125 RIIAIDALCWPG-MKQYALKYLLR 147
            I+AIDAL +   + Q+  + + R
Sbjct: 375 EIVAIDALHFRRYLDQFVPEKVRR 398

>3uek_A Poly(ADP-ribose) glycohydrolase; mammalian PArg, macrodomain; 1.95A {Rattus norvegicus} PDB: 3uel_A* Length = 588

 Score =  156 bits (395), Expect = 1e-45
 Identities = 53/143 (37%), Positives = 75/143 (52%), Gaps = 1/143 (0%)

Query: 6   SYPEADFWSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIRFM 65
           S  +   W +   PL    V   G IE      L+VDFAN+++G G    G V EEIRF+
Sbjct: 313 SLEDFPEWERCDKPLTRLHVTYEGTIEGNGRGMLQVDFANRFVGGGVTGAGLVQEEIRFL 372

Query: 66  INPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGRRKTR 125
           INPELI   LF   +  NE + I G E++ +Y GY  ++R+A    D    D + R  T 
Sbjct: 373 INPELIVSRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWARSHEDGSEKDDWQRCCTE 432

Query: 126 IIAIDALCWP-GMKQYALKYLLR 147
           I+AIDAL +   + Q+  + + R
Sbjct: 433 IVAIDALHFRRYLDQFVPEKVRR 455

>4epp_A Poly(ADP-ribose) glycohydrolase; marco domain, PAR; HET: APR; 1.95A {Tetrahymena thermophila} PDB: 4epq_A* Length = 477

 Score =  125 bits (315), Expect = 7e-35
 Identities = 50/148 (33%), Positives = 73/148 (49%), Gaps = 6/148 (4%)

Query: 4   FTSYPEADFWSKSV--LPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
                + + W   +  + L   ++     IED     L+VDFAN  IG G L  G V EE
Sbjct: 218 CGQLEDYENWVDKLKAIKLKNVQLTDDKLIEDFP-GTLQVDFANCDIGGGILGNGLVQEE 276

Query: 62  IRFMINPELIAGML-FLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFG 120
           IRF + PE++  +L F  SM  NE I + G +++ DY+GY++SFRF      K       
Sbjct: 277 IRFCVCPEMLVSLLVFDQSMEANEVIIMKGIKQYSDYQGYSNSFRFVKMGNSKIQKQK-R 335

Query: 121 RRKTRIIAIDALCW-PGMKQYALKYLLR 147
                I+AIDALC+     Q++   + R
Sbjct: 336 NNPQTILAIDALCFNSSDNQFSEVNVSR 363

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	162
4a0d_A	531	Poly(ADP-ribose) glycohydrolase; 1.75A {Homo sapie	100.0
3uek_A	588	Poly(ADP-ribose) glycohydrolase; mammalian PArg, m	100.0
4epp_A	477	Poly(ADP-ribose) glycohydrolase; marco domain, PAR	100.0

>4a0d_A Poly(ADP-ribose) glycohydrolase; 1.75A {Homo sapiens} PDB: 4fc2_A

Probab=100.00  E-value=1.4e-57  Score=415.09  Aligned_cols=152  Identities=35%  Similarity=0.600  Sum_probs=146.5

Q ss_pred             CChhchhhcCCCccceEEEecCcccccCCCceEEEccccccCCcccCCCcccceeeeeeChhHHHhhhhcccCCCccEEE
Q 045192            8 PEADFWSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIRFMINPELIAGMLFLASMGDNEAIE   87 (162)
Q Consensus         8 ~~~~~W~~s~~~L~~~~v~~~g~IEd~~~~~lqVDFANk~iGGGvL~~G~vQEEI~F~i~PEllvs~Lf~e~L~dnEai~   87 (162)
                      .+.++|.+++.|||+++|.++|+|||.+.+++|||||||+||||||+.|||||||||++||||||+|||||+|+|||||+
T Consensus       258 ~~~~~w~~s~~~L~~l~V~~~g~IEd~~~~~lqVDFANk~IGGGvL~~G~vQEEIrF~i~PELlvs~Lf~e~L~dnEaii  337 (531)
T 4a0d_A          258 EDFPEWERCEKPLTRLHVTYEGTIEENGQGMLQVDFANRFVGGGVTSAGLVQEEIRFLINPELIISRLFTEVLDHNECLI  337 (531)
T ss_dssp             SCCCCGGGCCCBCCCEEEESSSCHHHHTTTSEEEEEECSSTTTTTTTTCCSHHHHHHHHSGGGGGHHHHBCCCCTTEEEE
T ss_pred             CCcccHHHccCcCCceEEeccCccccCCCCcEEEEecccccCcccccCCcceeeeeeecCHHHHHHHHhCcccCCCceEE
Confidence            45677999999999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             EeCceeeeeeccccceeeEcCCCCCCccccccCccceEEEEEecCCCC-CcccCchhhhHHHHHHHHcccccc
Q 045192           88 IVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGRRKTRIIAIDALCWP-GMKQYALKYLLRCVKFALEHLENT  159 (162)
Q Consensus        88 I~Gae~~s~y~GY~~sf~~~g~~~d~~~~d~~~~~~~~ivaiDAl~~~-~~~Qf~~~~i~REL~KAy~gF~~~  159 (162)
                      |+|++|||+|+||++||+|+|++.|++++|.++||+++||||||+.|+ +..||++++|+|||||||+||.+.
T Consensus       338 I~GaeryS~y~GY~~sf~~~g~~~d~~~~d~~~rr~t~ivaiDAl~f~~~~~Qf~~~~I~RELnKAy~GF~~~  410 (531)
T 4a0d_A          338 ITGTEQYSEYTGYAETYRWSRSHEDGSERDDWQRRCTEIVAIDALHFRRYLDQFVPEKMRRELNKAYCGFLRP  410 (531)
T ss_dssp             EECCCCCEEEECCGGGCEEEEECCCCCCBCTTSCBSCEEEEEECCCCSSGGGGGSHHHHHHHHHHHHHHHCCT
T ss_pred             EeCcEEeEeeccCccceEeccccCCccccccccceeeeEEEEECcccCCchhhhCHHHHHHHHHHHHHhcccc
Confidence            999999999999999999999999999999999999999999999996 578999999999999999999653

>3uek_A Poly(ADP-ribose) glycohydrolase; mammalian PArg, macrodomain; 1.95A {Rattus norvegicus} PDB: 3uel_A*

Probab=100.00  E-value=4.9e-56  Score=408.00  Aligned_cols=152  Identities=35%  Similarity=0.576  Sum_probs=147.0

Q ss_pred             CChhchhhcCCCccceEEEecCcccccCCCceEEEccccccCCcccCCCcccceeeeeeChhHHHhhhhcccCCCccEEE
Q 045192            8 PEADFWSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIRFMINPELIAGMLFLASMGDNEAIE   87 (162)
Q Consensus         8 ~~~~~W~~s~~~L~~~~v~~~g~IEd~~~~~lqVDFANk~iGGGvL~~G~vQEEI~F~i~PEllvs~Lf~e~L~dnEai~   87 (162)
                      ++.++|++|+.|||+++|.++|+|||++.+++|||||||+||||||+.|||||||||++||||+|+|||||+|+|||||+
T Consensus       315 ~~~~~w~~s~~~L~~l~V~~~G~IEd~~~~~lqVDFANk~IGGGvL~~g~vQEEIrF~i~PELlvs~Lf~e~L~dnEali  394 (588)
T 3uek_A          315 EDFPEWERCDKPLTRLHVTYEGTIEGNGRGMLQVDFANRFVGGGVTGAGLVQEEIRFLINPELIVSRLFTEVLDHNECLI  394 (588)
T ss_dssp             SCCCCGGGCCCCCCCEEEESSSCHHHHTTTSEEEEEECSSTTTTTTSSCCSHHHHHHHHSGGGGGHHHHBCCCCTTEEEE
T ss_pred             CCccchhhhcCcCcceEEecCCccCcCCCCcEEEEEeccccCccccCCCcchhHhhhhhCHHHHHHHHhCcccCCCcEEE
Confidence            45678999999999999999999999988899999999999999999999999999999999999999999999999999


Q ss_pred             EeCceeeeeeccccceeeEcCCCCCCccccccCccceEEEEEecCCCC-CcccCchhhhHHHHHHHHcccccc
Q 045192           88 IVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGRRKTRIIAIDALCWP-GMKQYALKYLLRCVKFALEHLENT  159 (162)
Q Consensus        88 I~Gae~~s~y~GY~~sf~~~g~~~d~~~~d~~~~~~~~ivaiDAl~~~-~~~Qf~~~~i~REL~KAy~gF~~~  159 (162)
                      |+|++|||+|+||+++|+|+|++.|.+++|.++|+.++||||||+.|+ ...||++++|+|||||||+||...
T Consensus       395 I~Gae~ys~y~GY~~sf~~~g~~~d~~~~d~~~rr~~~ivaiDAl~f~~~~~Qf~~~~i~RELnKAy~GF~~~  467 (588)
T 3uek_A          395 ITGTEQYSEYTGYAETYRWARSHEDGSEKDDWQRCCTEIVAIDALHFRRYLDQFVPEKVRRELNKAYCGFLRP  467 (588)
T ss_dssp             EECCCCCEEEESCGGGCEEEEECCCCCCBCTTCCBSCEEEEEECCCCSSGGGGGSHHHHHHHHHHHHHHHCCT
T ss_pred             EECcEeeeeeeccccceEEccccCCccchhhhccceeEEEEEEchhccCchhhcCHHHHHHHHHHHHHhhhcc
Confidence            999999999999999999999999999999999999999999999996 478999999999999999999975

>4epp_A Poly(ADP-ribose) glycohydrolase; marco domain, PAR; HET: APR; 1.95A {Tetrahymena thermophila} PDB: 4epq_A*

Probab=100.00  E-value=8.5e-56  Score=398.69  Aligned_cols=150  Identities=33%  Similarity=0.536  Sum_probs=145.0

Q ss_pred             CChhchhhcCC--CccceEEEecCcccccCCCceEEEccccccCCcccCCCcccceeeeeeChhHHHhhh-hcccCCCcc
Q 045192            8 PEADFWSKSVL--PLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIRFMINPELIAGML-FLASMGDNE   84 (162)
Q Consensus         8 ~~~~~W~~s~~--~L~~~~v~~~g~IEd~~~~~lqVDFANk~iGGGvL~~G~vQEEI~F~i~PEllvs~L-f~e~L~dnE   84 (162)
                      .+.++|++|+.  |||+++|.++|+||| +++++|||||||+||||||+.|||||||||++||||+|+|| |||+|+|||
T Consensus       222 ~~~~~W~~s~~~~~L~~l~v~~~g~IEd-~~~~lqVDFANK~IGGGvL~~g~vQEEI~F~i~PEL~vs~L~f~e~L~dnE  300 (477)
T 4epp_A          222 EDYENWVDKLKAIKLKNVQLTDDKLIED-FPGTLQVDFANCDIGGGILGNGLVQEEIRFCVCPEMLVSLLVFDQSMEANE  300 (477)
T ss_dssp             CCHHHHHHHGGGCBCCCEEEESSCCGGG-CTTSEEEEEECSSTTTTTTTTCCSHHHHHHHHCGGGGGGGGTCCSCCCTTE
T ss_pred             ccccchhhccccCCCccEEEecCCcccC-CCCcEEEEEeccccCCccCCCCcchhHhhhhcCHHHHHHHHhcccccCCCe
Confidence            57899999999  999999999999999 78999999999999999999999999999999999999999 999999999


Q ss_pred             EEEEeCceeeeeeccccceeeEcCCCCCCccccccCccceEEEEEecCCCC-CcccCchhhhHHHHHHHHcccccc
Q 045192           85 AIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGRRKTRIIAIDALCWP-GMKQYALKYLLRCVKFALEHLENT  159 (162)
Q Consensus        85 ai~I~Gae~~s~y~GY~~sf~~~g~~~d~~~~d~~~~~~~~ivaiDAl~~~-~~~Qf~~~~i~REL~KAy~gF~~~  159 (162)
                      ||+|+|++|||+|+||++||+|.|++.|++++|. +|++++||||||+.|+ +..||++++|+|||||||+||++.
T Consensus       301 aliI~Ga~rys~y~GY~~sf~~~g~~~d~~~~d~-~~~~~~ivaiDAl~f~~~~~Q~~~~~i~RELnKay~GF~~~  375 (477)
T 4epp_A          301 VIIMKGIKQYSDYQGYSNSFRFVKMGNSKIQKQK-RNNPQTILAIDALCFNSSDNQFSEVNVSRELNKSYMGFKQE  375 (477)
T ss_dssp             EEEEEEECCCCEEESCGGGCEEECCCCSHHHHHH-HHSCEEEEEEECCCCCTTSCTTSHHHHHHHHHHHHHHHTSS
T ss_pred             EEEEECcEeEEeeeecccceEEcccCCCcccccc-ccceeEEEEEEccccCCchhccCHHHHHHHHHHHHHhhccC
Confidence            9999999999999999999999999999999998 8899999999999996 789999999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00