Citrus Sinensis ID: 045208

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSPGKVGPAVKGSRGAELVDGLVIREGDYKLVKTRFSAFFATHLHSFLQGAGVDSVQTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATATLQEWSERVADA
cccccccccccccccccHHHHHHHHHHHHHHccccEEEEEcEEcccccccHHHHHHcccccccccccccccccccccccccccccEEEEcccccccccccHHHHHHHccccEEEccHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHcccEEccHHHHHHHHHcc
ccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccccccccccccccccccHHHHcccccccEEEEEccccHHccccHHHHHHHccccEEEccHHHHHHHHHHHHcccccEEEEccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHcc
ndfiaddglvkmdggkvilpnVIRAVEIARQRGILVVWVVRehnplgrdvelfrrhryspgkvgpavkgsrgaelvdglviregdYKLVKTRFSAFFATHLHSFLqgagvdsvqtpncirQTAFDaialdyqpvTVVVDAtaaatpdvhaaniVDMKNFGIATATLQEWSERVADA
ndfiaddglvkmdggkvilpNVIRAVEIARQRGILVVWVVRehnplgrdvelfrrhryspgkvgpavkgsrgaelvdglviREGDYKLVKTRFSAFFATHLHSFLQGAGVDSVQTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATATLQEWSERVADA
NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSPGKVGPAVKGSRGAELVDGLVIREGDYKLVKTRFSAFFATHLHSFLQGAGVDSVQTPNCIRQTAFDAIALDYQpvtvvvdataaatpdvhaaNIVDMKNFGIATATLQEWSERVADA
****ADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSPGKVGPAVKGSRGAELVDGLVIREGDYKLVKTRFSAFFATHLHSFLQGAGVDSVQTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATATLQEW*******
NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSPGKVGPAVKGSRGAELVDGLVIREGDYKLVKTRFSAFFATHLHSFLQGAGVDSVQTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATATLQEWSERVAD*
NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSPGKVGPAVKGSRGAELVDGLVIREGDYKLVKTRFSAFFATHLHSFLQGAGVDSVQTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATATLQEWSERVADA
*DFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSPGKVGPAVKGSRGAELVDGLVIREGDYKLVKTRFSAFFATHLHSFLQGAGVDSVQTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATATLQEWSERVAD*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSPGKVGPAVKGSRGAELVDGLVIREGDYKLVKTRFSAFFATHLHSFLQGAGVDSVQTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATATLQEWSERVADA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query176 2.2.26 [Sep-21-2011]
B5YU52231 Peroxyureidoacrylate/urei yes no 0.812 0.619 0.308 1e-08
C6UPN3230 Peroxyureidoacrylate/urei yes no 0.812 0.621 0.308 2e-08
Q8XAU3230 Peroxyureidoacrylate/urei N/A no 0.812 0.621 0.308 2e-08
A7ZKB6231 Peroxyureidoacrylate/urei yes no 0.812 0.619 0.302 5e-08
D3QPK4244 Peroxyureidoacrylate/urei yes no 0.812 0.586 0.302 6e-08
B7NLB5230 Peroxyureidoacrylate/urei yes no 0.812 0.621 0.296 1e-07
Q8FJ42244 Peroxyureidoacrylate/urei yes no 0.812 0.586 0.296 1e-07
D2NGI8230 Peroxyureidoacrylate/urei yes no 0.812 0.621 0.296 1e-07
B7MTF4230 Peroxyureidoacrylate/urei yes no 0.812 0.621 0.296 1e-07
B7M8Z6230 Peroxyureidoacrylate/urei yes no 0.812 0.621 0.296 1e-07
>sp|B5YU52|RUTB_ECO5E Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rutB PE=3 SV=1 Back     alignment and function desciption
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 74/162 (45%), Gaps = 19/162 (11%)

Query: 16  KVILPNVIRAVEIARQRGILVVWVVR-----------EHNPLGRDVELFRRHRYSPGKVG 64
           + ++ N+  AV  AR  G+L++W                +P        +  R  P   G
Sbjct: 48  RPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQG 107

Query: 65  PAV-KGSRGAELVDGLVIREGDYKLVKTRFSAFFATHLHSFLQGAGV-----DSVQTPNC 118
             + KGS   +LVD LV + GD  L K R+S FF T L S L+  G+      S+ T  C
Sbjct: 108 KLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTSIATNVC 167

Query: 119 IRQTAFDAIALDYQPVTVVVDATAAATPD-VHAANIVDMKNF 159
           +  T  D   L+Y  V V+ DAT  A P+ V  A + +++ F
Sbjct: 168 VESTLRDGFFLEYFGV-VLEDATHQAGPEFVQKAALFNIETF 208
In vivo, quickly hydrolyzes the ureidoacrylate peracid to avoid toxicity, but can also hydrolyzes ureidoacrylate that is formed spontaneously from ureidoacrylate peracid. One of the products of hydrolysis, carbamate, hydrolyzes spontaneously, thereby releasing one of the pyrimidine rings nitrogen atoms as ammonia and one of its carbons as CO2.
Escherichia coli O157:H7 (strain EC4115 / EHEC) (taxid: 444450)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 1EC: 0
>sp|C6UPN3|RUTB_ECO5T Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Escherichia coli O157:H7 (strain TW14359 / EHEC) GN=rutB PE=3 SV=1 Back     alignment and function description
>sp|Q8XAU3|RUTB_ECO57 Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Escherichia coli O157:H7 GN=rutB PE=3 SV=1 Back     alignment and function description
>sp|A7ZKB6|RUTB_ECO24 Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rutB PE=3 SV=1 Back     alignment and function description
>sp|D3QPK4|RUTB_ECOCB Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Escherichia coli O55:H7 (strain CB9615 / EPEC) GN=rutB PE=3 SV=1 Back     alignment and function description
>sp|B7NLB5|RUTB_ECO7I Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rutB PE=3 SV=1 Back     alignment and function description
>sp|Q8FJ42|RUTB_ECOL6 Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rutB PE=3 SV=1 Back     alignment and function description
>sp|D2NGI8|RUTB_ECOS5 Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Escherichia coli O150:H5 (strain SE15) GN=rutB PE=3 SV=1 Back     alignment and function description
>sp|B7MTF4|RUTB_ECO81 Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Escherichia coli O81 (strain ED1a) GN=rutB PE=3 SV=1 Back     alignment and function description
>sp|B7M8Z6|RUTB_ECO8A Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Escherichia coli O8 (strain IAI1) GN=rutB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query176
217073984195 unknown [Medicago truncatula] gi|3885026 0.982 0.887 0.764 1e-75
224073989195 predicted protein [Populus trichocarpa] 0.965 0.871 0.777 3e-75
351721482195 uncharacterized protein LOC100499982 [Gl 0.982 0.887 0.769 2e-74
297743245269 unnamed protein product [Vitis vinifera] 0.971 0.635 0.744 2e-73
225442575195 PREDICTED: peroxyureidoacrylate/ureidoac 0.971 0.876 0.744 4e-73
351727649271 uncharacterized protein LOC100527482 [Gl 0.948 0.616 0.75 2e-70
330318641200 isochorismatase hydrolase family protein 0.965 0.85 0.737 2e-70
356526115266 PREDICTED: LOW QUALITY PROTEIN: peroxyur 0.965 0.639 0.737 5e-70
297743244263 unnamed protein product [Vitis vinifera] 0.971 0.650 0.693 5e-69
225442571195 PREDICTED: peroxyureidoacrylate/ureidoac 0.988 0.892 0.687 7e-69
>gi|217073984|gb|ACJ85352.1| unknown [Medicago truncatula] gi|388502678|gb|AFK39405.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
 Score =  287 bits (734), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 136/178 (76%), Positives = 156/178 (87%), Gaps = 5/178 (2%)

Query: 2   DFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSPG 61
           DFI D+  V + GGK ++PNVI+AVEIARQRGIL+VWVVREH+PLGRDVELFRRH Y+ G
Sbjct: 18  DFIKDESPVNVKGGKDVVPNVIKAVEIARQRGILIVWVVREHDPLGRDVELFRRHLYAEG 77

Query: 62  KVGPAVKGSRGAELVDGLVIREGDYKLVKTRFSAFFATHLHSFLQGAGVDS-----VQTP 116
           KVGP  KG+ GAELV+GLVI+EGDYK+VKTRFSAFF+THLHSFLQGAGV+S     VQTP
Sbjct: 78  KVGPTSKGTEGAELVNGLVIKEGDYKVVKTRFSAFFSTHLHSFLQGAGVNSLVVTGVQTP 137

Query: 117 NCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATATLQEWSERVA 174
           NCIRQT FDA+ALDYQPVTV+VDATAAATPD+H AN++DMKN G+AT TLQEWSE  A
Sbjct: 138 NCIRQTVFDAVALDYQPVTVLVDATAAATPDIHLANVLDMKNIGVATPTLQEWSESKA 195

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224073989|ref|XP_002304210.1| predicted protein [Populus trichocarpa] gi|222841642|gb|EEE79189.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|351721482|ref|NP_001235163.1| uncharacterized protein LOC100499982 [Glycine max] gi|255628277|gb|ACU14483.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|297743245|emb|CBI36112.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225442575|ref|XP_002284348.1| PREDICTED: peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|351727649|ref|NP_001236656.1| uncharacterized protein LOC100527482 [Glycine max] gi|255632452|gb|ACU16576.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|330318641|gb|AEC10981.1| isochorismatase hydrolase family protein [Camellia sinensis] Back     alignment and taxonomy information
>gi|356526115|ref|XP_003531665.1| PREDICTED: LOW QUALITY PROTEIN: peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB-like [Glycine max] Back     alignment and taxonomy information
>gi|297743244|emb|CBI36111.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225442571|ref|XP_002284352.1| PREDICTED: peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query176
TAIR|locus:2094927196 AT3G16190 [Arabidopsis thalian 0.988 0.887 0.611 2.4e-53
TIGR_CMR|CHY_0679191 CHY_0679 "isochorismatase fami 0.670 0.617 0.343 4.1e-10
UNIPROTKB|P75897230 rutB "peroxyureidoacrylate / u 0.647 0.495 0.305 1.1e-06
TIGR_CMR|BA_3315193 BA_3315 "isochorismatase famil 0.426 0.388 0.349 0.00024
UNIPROTKB|Q88FY5213 nicF "Maleamate amidohydrolase 0.630 0.521 0.330 0.00067
TAIR|locus:2094927 AT3G16190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 110/180 (61%), Positives = 129/180 (71%)

Query:     1 NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSP 60
             NDFI +  + ++ GGK I+PNVIR VE+ARQRGILV+WVVREH+  GRDVELFRRH YS 
Sbjct:    17 NDFIEEGAVTQVKGGKSIVPNVIRVVELARQRGILVIWVVREHDRQGRDVELFRRHNYSS 76

Query:    61 GKVGPAVKGSRGAELVDGLVIRE-GDYKLVKTRFSAFFATHLHSFLQGAGVDS-----VQ 114
              KVGP +KG+ GAELVDGL+I E  DYK+VKTRFSAFF+T+LHSFLQ +GV       VQ
Sbjct:    77 EKVGPVIKGTVGAELVDGLMINEEDDYKIVKTRFSAFFSTNLHSFLQTSGVTKLVIAGVQ 136

Query:   115 TPNCIRQTAFDAIALDYQXXXXXXXXXXXXXXXXXXXNIVDMKNFGIATATLQEWSERVA 174
             TPNCIRQT FDA+ALDY                    NI+DMKN G+ T TL EWSE +A
Sbjct:   137 TPNCIRQTVFDAVALDYPNVTVITDATAAATPEIHTANILDMKNIGVKTPTLHEWSEELA 196
GO:0003824 "catalytic activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0008152 "metabolic process" evidence=IEA;ISS
TIGR_CMR|CHY_0679 CHY_0679 "isochorismatase family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|P75897 rutB "peroxyureidoacrylate / ureidoacrylate amido hydrolase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3315 BA_3315 "isochorismatase family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q88FY5 nicF "Maleamate amidohydrolase" [Pseudomonas putida KT2440 (taxid:160488)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_III000417
hypothetical protein (195 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pg.C_LG_V0531
nicotinate phosphoribosyltransferase (EC-2.4.2.11) (559 aa)
•    •• 0.427
estExt_fgenesh4_pm.C_LG_VII0321
nicotinate phosphoribosyltransferase (EC-2.4.2.11) (560 aa)
•    •• 0.422

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query176
cd00431161 cd00431, cysteine_hydrolases, Cysteine hydrolases; 2e-33
pfam00857173 pfam00857, Isochorismatase, Isochorismatase family 7e-30
COG1335205 COG1335, PncA, Amidases related to nicotinamidase 9e-21
cd01015179 cd01015, CSHase, N-carbamoylsarcosine amidohydrola 1e-18
cd01014155 cd01014, nicotinamidase_related, Nicotinamidase_ r 4e-14
PLN02621197 PLN02621, PLN02621, nicotinamidase 3e-11
TIGR03614226 TIGR03614, RutB, pyrimidine utilization protein B 1e-09
cd01011196 cd01011, nicotinamidase, Nicotinamidase/pyrazinami 6e-09
PTZ00331212 PTZ00331, PTZ00331, alpha/beta hydrolase; Provisio 8e-07
cd01013203 cd01013, isochorismatase, Isochorismatase, also kn 1e-06
PRK11609212 PRK11609, PRK11609, nicotinamidase/pyrazinamidase; 5e-06
COG1535218 COG1535, EntB, Isochorismate hydrolase [Secondary 7e-05
>gnl|CDD|238245 cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle Back     alignment and domain information 
 Score =  116 bits (292), Expect = 2e-33
 Identities = 53/162 (32%), Positives = 77/162 (47%), Gaps = 14/162 (8%)

Query: 1   NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSP 60
           NDF+   GL+ + G   ++PN+ R +  AR  GI V++    H P   +           
Sbjct: 9   NDFVPGGGLL-LPGADELVPNINRLLAAARAAGIPVIFTRDWHPPDDPEFAELL------ 61

Query: 61  GKVGPAVKGSRGAELVDGLVIREGDYKLVKTRFSAFFATHLHSFLQGAGVDSV-----QT 115
                 VKG+ GAELV  L     D  + KTR+SAF+ T L   L+  G+D++      T
Sbjct: 62  -WPPHCVKGTEGAELVPELAPLPDDLVIEKTRYSAFYGTDLDELLRERGIDTLVVCGIAT 120

Query: 116 PNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMK 157
             C+  TA DA+ L Y+ V VV DA A    + H A +  + 
Sbjct: 121 DICVLATARDALDLGYR-VIVVEDACATRDEEDHEAALERLA 161

It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function. Length = 161
>gnl|CDD|216156 pfam00857, Isochorismatase, Isochorismatase family Back     alignment and domain information
>gnl|CDD|224254 COG1335, PncA, Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|238497 cd01015, CSHase, N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia Back     alignment and domain information
>gnl|CDD|238496 cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases Back     alignment and domain information
>gnl|CDD|178229 PLN02621, PLN02621, nicotinamidase Back     alignment and domain information
>gnl|CDD|163356 TIGR03614, RutB, pyrimidine utilization protein B Back     alignment and domain information
>gnl|CDD|238493 cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase) Back     alignment and domain information
>gnl|CDD|240363 PTZ00331, PTZ00331, alpha/beta hydrolase; Provisional Back     alignment and domain information
>gnl|CDD|238495 cd01013, isochorismatase, Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems Back     alignment and domain information
>gnl|CDD|183228 PRK11609, PRK11609, nicotinamidase/pyrazinamidase; Provisional Back     alignment and domain information
>gnl|CDD|224452 COG1535, EntB, Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 176
cd01015179 CSHase N-carbamoylsarcosine amidohydrolase (CSHase 100.0
TIGR03614226 RutB pyrimidine utilization protein B. RL Proc Nat 100.0
PRK11609212 nicotinamidase/pyrazinamidase; Provisional 100.0
PRK11440188 putative hydrolase; Provisional 100.0
PF00857174 Isochorismatase: Isochorismatase family; InterPro: 100.0
cd01011196 nicotinamidase Nicotinamidase/pyrazinamidase (PZas 100.0
cd01013203 isochorismatase Isochorismatase, also known as 2,3 100.0
PTZ00331212 alpha/beta hydrolase; Provisional 100.0
PLN02621197 nicotinamidase 100.0
cd00431161 cysteine_hydrolases Cysteine hydrolases; This fami 100.0
cd01012157 YcaC_related YcaC related amidohydrolases; E.coli 100.0
COG1335205 PncA Amidases related to nicotinamidase [Secondary 100.0
PLN02743239 nicotinamidase 100.0
cd01014155 nicotinamidase_related Nicotinamidase_ related ami 99.97
COG1535218 EntB Isochorismate hydrolase [Secondary metabolite 99.97
KOG4003223 consensus Pyrazinamidase/nicotinamidase PNC1 [Defe 99.83
KOG4044201 consensus Mitochondrial associated endoribonucleas 99.7
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia Back     alignment and domain information 
Probab=100.00  E-value=5e-39  Score=238.14  Aligned_cols=166  Identities=30%  Similarity=0.384  Sum_probs=148.5

Q ss_pred             CCccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEEEcccCCCCCChhhhhhccCCCCCCCCccCCCCCcccccCCC
Q 045208            1 NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSPGKVGPAVKGSRGAELVDGLV   80 (176)
Q Consensus         1 ndF~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~   80 (176)
                      |||++|++ +..++.+.+++|++++++.+|++|+||||+++.|.++..+.+.|.+....   .+.+..|++|++++++|.
T Consensus         9 ~~f~~~~~-~~~~~~~~~~~ni~~l~~~ar~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~---~~~~~~gs~~~~~~~~l~   84 (179)
T cd01015           9 EGYTQPGS-YLAPGIAAALENVQRLLAAARAAGVPVIHTTVVYDPDGADGGLWARKVPA---MSDLVEGSPLAAICDELA   84 (179)
T ss_pred             cceeCCCC-ccccchHHHHHHHHHHHHHHHHcCCCEEEEEeeECCccCccchhhhcccc---cccccCCCCccccccccC
Confidence            79998755 67788999999999999999999999999999887765555555433211   134778999999999999


Q ss_pred             CCCCCeeeecCCCCccCCCChHHHHHhCCCCe-----eecChhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHH
Q 045208           81 IREGDYKLVKTRFSAFFATHLHSFLQGAGVDS-----VQTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVD  155 (176)
Q Consensus        81 ~~~~d~v~~K~~~saf~~t~l~~~L~~~~i~~-----~~t~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~  155 (176)
                      |.+++++|.|++||+|++|+|+.+|+++||++     ++||+||++|+++|+++||+ |+|++|||++.+++.|+.+|..
T Consensus        85 ~~~~~~v~~K~~~saF~~t~L~~~L~~~gi~~vvi~G~~t~~CV~~Ta~~A~~~Gy~-v~vv~Da~a~~~~~~h~~al~~  163 (179)
T cd01015          85 PQEDEMVLVKKYASAFFGTSLAATLTARGVDTLIVAGCSTSGCIRATAVDAMQHGFR-PIVVRECVGDRAPAPHEANLFD  163 (179)
T ss_pred             CCCCCEEEecCccCCccCCcHHHHHHHcCCCEEEEeeecccHhHHHHHHHHHHCCCe-EEEeeccccCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999     99999999999999999999 9999999999999999999999


Q ss_pred             HHhcCcEeeeHHHHHH
Q 045208          156 MKNFGIATATLQEWSE  171 (176)
Q Consensus       156 l~~~g~~v~~~~e~~~  171 (176)
                      |...++.|++++|++.
T Consensus       164 l~~~~~~v~~t~~~~~  179 (179)
T cd01015         164 IDNKYGDVVSTDDALA  179 (179)
T ss_pred             HHhhceeeccHHHHhC
Confidence            9999999999999863

CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
>TIGR03614 RutB pyrimidine utilization protein B Back     alignment and domain information
>PRK11609 nicotinamidase/pyrazinamidase; Provisional Back     alignment and domain information
>PRK11440 putative hydrolase; Provisional Back     alignment and domain information
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes Back     alignment and domain information
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase) Back     alignment and domain information
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems Back     alignment and domain information
>PTZ00331 alpha/beta hydrolase; Provisional Back     alignment and domain information
>PLN02621 nicotinamidase Back     alignment and domain information
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle Back     alignment and domain information
>cd01012 YcaC_related YcaC related amidohydrolases; E Back     alignment and domain information
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PLN02743 nicotinamidase Back     alignment and domain information
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases Back     alignment and domain information
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>KOG4003 consensus Pyrazinamidase/nicotinamidase PNC1 [Defense mechanisms] Back     alignment and domain information
>KOG4044 consensus Mitochondrial associated endoribonuclease MAR1 (isochorismatase superfamily) [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query176
3hu5_A204 Crystal Structure Of Isochorismatase Family Protein 9e-19
3eef_A182 Crystal Structure Of N-Carbamoylsarcosine Amidase F 5e-10
3hb7_A204 The Crystal Structure Of An Isochorismatase-Like Hy 2e-09
1nba_A264 Crystal Structure Analysis, Refinement And Enzymati 2e-05
>pdb|3HU5|A Chain A, Crystal Structure Of Isochorismatase Family Protein From Desulfovibrio Vulgaris Subsp. Vulgaris Str. Hildenborough Length = 204 Back     alignment and structure 
Iteration: 1

 Score = 89.4 bits (220), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 57/136 (41%), Positives = 71/136 (52%), Gaps = 6/136 (4%)
Query: 1   NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSP 60
           NDF+       ++G    +P +   +  AR  G  V+ VVR H   G D E  R H +  
Sbjct: 18  NDFVLPGAPACVEGAXGTVPVIAGLLAKARAEGWXVLHVVRAHRADGSDAEKSREHLFLE 77
Query: 61  GKVGPAVKGSRGAELVDGLVIREGDYKLVKTRFSAFFATHLHSFLQGAGVDSV-----QT 115
           G  G  V G+ GAE+V GL    G+  LVKTRFSAF  T     L+  GVD++     Q 
Sbjct: 78  GG-GLCVAGTPGAEIVAGLEPASGETVLVKTRFSAFXGTECDXLLRRRGVDTLLVSGTQY 136
Query: 116 PNCIRQTAFDAIALDY 131
           PNCIR TA DA ALDY
Sbjct: 137 PNCIRGTAVDAFALDY 152
>pdb|3EEF|A Chain A, Crystal Structure Of N-Carbamoylsarcosine Amidase From Thermoplasma Acidophilum Length = 182 Back     alignment and structure
>pdb|3HB7|A Chain A, The Crystal Structure Of An Isochorismatase-Like Hydrolase From Alkaliphilus Metalliredigens To 2.3a Length = 204 Back     alignment and structure
>pdb|1NBA|A Chain A, Crystal Structure Analysis, Refinement And Enzymatic Reaction Mechanism Of N-Carbamoylsarcosine Amidohydrolase From Arthrobacter Sp. At 2.0 Angstroms Resolution Length = 264 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query176
3hu5_A204 Isochorismatase family protein; structural genomic 4e-52
1nba_A264 N-carbamoylsarcosine amidohydrolase; hydrolase(IN 2e-47
3hb7_A204 Isochorismatase hydrolase; PS structural genomics, 2e-46
3ot4_A236 Putative isochorismatase; NICF, maleamate hydrolas 4e-43
2fq1_A287 Isochorismatase; ENTB, NRPS, multi-domain, ACP, hy 1e-42
1nf9_A207 Phenazine biosynthesis protein PHZD; isochorismata 1e-41
3eef_A182 N-carbamoylsarcosine amidase related protein; stru 2e-41
3irv_A233 Cysteine hydrolase; structural genomics, PSI-2, pr 2e-40
3kl2_A226 Putative isochorismatase; structural genomics, unk 9e-40
3txy_A199 Isochorismatase family protein family; structural 2e-39
1im5_A180 180AA long hypothetical pyrazinamidase/nicotinamid 2e-38
3o94_A211 Nicotinamidase; hydrolase; 1.60A {Streptococcus pn 2e-38
1j2r_A199 Hypothetical isochorismatase family protein YECD; 3e-35
3oqp_A211 Putative isochorismatase; catalytic triad, structu 2e-31
3gbc_A186 Pyrazinamidase/nicotinamidas PNCA; nicotinamidase 3e-30
3r2j_A227 Alpha/beta-hydrolase-like protein; nicotinamidase, 2e-29
2wt9_A235 Nicotinamidase; hydrolase, pyrazinamidase; HET: GO 1e-27
3lqy_A190 Putative isochorismatase hydrolase; structural gen 3e-26
3v8e_A216 Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccha 6e-23
2a67_A167 Isochorismatase family protein; structural genomic 8e-22
3mcw_A198 Putative hydrolase; isochorismatase family, struct 3e-21
1yac_A208 Ycacgp, YCAC gene product; unknown bacterial hydro 1e-13
1yzv_A204 Hypothetical protein; structural genomics, PSI, pr 8e-13
1x9g_A200 Putative MAR1; structural genomics, protein struct 9e-12
2b34_A199 F35G2.2, MAR1 ribonuclease; isochorismatase family 5e-06
>3hu5_A Isochorismatase family protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.50A {Desulfovibrio vulgaris} Length = 204 Back     alignment and structure
 Score =  164 bits (417), Expect = 4e-52
 Identities = 74/180 (41%), Positives = 93/180 (51%), Gaps = 7/180 (3%)

Query: 1   NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSP 60
           NDF+       ++G    +P +   +  AR  G +V+ VVR H   G D E  R H +  
Sbjct: 18  NDFVLPGAPACVEGAMGTVPVIAGLLAKARAEGWMVLHVVRAHRADGSDAEKSREHLFLE 77

Query: 61  GKVGPAVKGSRGAELVDGLVIREGDYKLVKTRFSAFFATHLHSFLQGAGVDS-----VQT 115
           G  G  V G+ GAE+V GL    G+  LVKTRFSAF  T     L+  GVD+      Q 
Sbjct: 78  GG-GLCVAGTPGAEIVAGLEPASGETVLVKTRFSAFMGTECDMLLRRRGVDTLLVSGTQY 136

Query: 116 PNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATATLQEWSERVAD 175
           PNCIR TA DA ALDY  V VV DA +A TP V  +NI DM+  GI    L    + +A 
Sbjct: 137 PNCIRGTAVDAFALDYD-VVVVTDACSARTPGVAESNINDMRAMGITCVPLTALDDVLAR 195
>1nba_A N-carbamoylsarcosine amidohydrolase; hydrolase(IN linear amides); 2.00A {Arthrobacter SP} SCOP: c.33.1.3 Length = 264 Back     alignment and structure
>3hb7_A Isochorismatase hydrolase; PS structural genomics, midwest center for structural genomics structure initiative; 2.30A {Alkaliphilus metalliredigens} Length = 204 Back     alignment and structure
>3ot4_A Putative isochorismatase; NICF, maleamate hydrolase, hydrol; 2.40A {Bordetella bronchiseptica} PDB: 3uao_A Length = 236 Back     alignment and structure
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli} Length = 287 Back     alignment and structure
>1nf9_A Phenazine biosynthesis protein PHZD; isochorismatase, enzyme, phenazine pathway, hydrolase; HET: BOG; 1.50A {Pseudomonas aeruginosa} SCOP: c.33.1.3 PDB: 1nf8_A* 3r77_A* Length = 207 Back     alignment and structure
>3eef_A N-carbamoylsarcosine amidase related protein; structural genomics, protein structure initiative, midwest center for structural genomics; 2.35A {Thermoplasma acidophilum} Length = 182 Back     alignment and structure
>3irv_A Cysteine hydrolase; structural genomics, PSI-2, protein structure initiative, CY hydrolase; 1.60A {Pseudomonas syringae PV} Length = 233 Back     alignment and structure
>3kl2_A Putative isochorismatase; structural genomics, unknown function, PSI-2, protein struct initiative; 2.30A {Streptomyces avermitilis} Length = 226 Back     alignment and structure
>3txy_A Isochorismatase family protein family; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.70A {Burkholderia thailandensis} Length = 199 Back     alignment and structure
>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A Length = 180 Back     alignment and structure
>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB: 3o90_A 3o91_A* 3o92_A* 3o93_A* Length = 211 Back     alignment and structure
>1j2r_A Hypothetical isochorismatase family protein YECD; parallel beta-sheet 3-2-1-4-5-6, alpha-beta-alpha motif, TET structural genomics; 1.30A {Escherichia coli} SCOP: c.33.1.3 Length = 199 Back     alignment and structure
>3oqp_A Putative isochorismatase; catalytic triad, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.22A {Burkholderia xenovorans} Length = 211 Back     alignment and structure
>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic; 2.68A {Leishmania infantum} Length = 227 Back     alignment and structure
>2wt9_A Nicotinamidase; hydrolase, pyrazinamidase; HET: GOL; 1.65A {Acinetobacter baumannii} PDB: 2wta_A* Length = 235 Back     alignment and structure
>3v8e_A Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccharomyces cerevisiae} PDB: 2h0r_A Length = 216 Back     alignment and structure
>2a67_A Isochorismatase family protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.00A {Enterococcus faecalis} Length = 167 Back     alignment and structure
>3mcw_A Putative hydrolase; isochorismatase family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.06A {Chromobacterium violaceum} Length = 198 Back     alignment and structure
>1yac_A Ycacgp, YCAC gene product; unknown bacterial hydrolase, three layer alpha-beta-alpha SA topology, ENTB homolog, cshase homolog; 1.80A {Escherichia coli} SCOP: c.33.1.3 Length = 208 Back     alignment and structure
>1yzv_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.00A {Trypanosoma cruzi} Length = 204 Back     alignment and structure
>1x9g_A Putative MAR1; structural genomics, protein structure initiative, SGPP, PSI structural genomics of pathogenic protozoa consortium; 2.41A {Leishmania donovani} SCOP: c.33.1.3 PDB: 1xn4_A Length = 200 Back     alignment and structure
>2b34_A F35G2.2, MAR1 ribonuclease; isochorismatase family, structural genomics, PSI, protein structure initiative; 2.14A {Caenorhabditis elegans} Length = 199 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query176
3hu5_A204 Isochorismatase family protein; structural genomic 100.0
3hb7_A204 Isochorismatase hydrolase; PS structural genomics, 100.0
3irv_A233 Cysteine hydrolase; structural genomics, PSI-2, pr 100.0
3lqy_A190 Putative isochorismatase hydrolase; structural gen 100.0
3ot4_A236 Putative isochorismatase; NICF, maleamate hydrolas 100.0
3eef_A182 N-carbamoylsarcosine amidase related protein; stru 100.0
3o94_A211 Nicotinamidase; hydrolase; 1.60A {Streptococcus pn 100.0
3kl2_A226 Putative isochorismatase; structural genomics, unk 100.0
1nba_A264 N-carbamoylsarcosine amidohydrolase; hydrolase(IN 100.0
3tg2_A223 Vibriobactin-specific isochorismatase; hydrolase; 100.0
3r2j_A227 Alpha/beta-hydrolase-like protein; nicotinamidase, 100.0
1j2r_A199 Hypothetical isochorismatase family protein YECD; 100.0
3mcw_A198 Putative hydrolase; isochorismatase family, struct 100.0
1im5_A180 180AA long hypothetical pyrazinamidase/nicotinamid 100.0
3oqp_A211 Putative isochorismatase; catalytic triad, structu 100.0
4h17_A197 Hydrolase, isochorismatase family; rossmann-like f 100.0
3gbc_A186 Pyrazinamidase/nicotinamidas PNCA; nicotinamidase 100.0
1nf9_A207 Phenazine biosynthesis protein PHZD; isochorismata 100.0
3v8e_A216 Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccha 100.0
2wt9_A235 Nicotinamidase; hydrolase, pyrazinamidase; HET: GO 100.0
3txy_A199 Isochorismatase family protein family; structural 100.0
2fq1_A287 Isochorismatase; ENTB, NRPS, multi-domain, ACP, hy 100.0
2a67_A167 Isochorismatase family protein; structural genomic 100.0
1yac_A208 Ycacgp, YCAC gene product; unknown bacterial hydro 99.98
2b34_A199 F35G2.2, MAR1 ribonuclease; isochorismatase family 99.97
1yzv_A204 Hypothetical protein; structural genomics, PSI, pr 99.97
1x9g_A200 Putative MAR1; structural genomics, protein struct 99.97
>3hu5_A Isochorismatase family protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.50A {Desulfovibrio vulgaris} Back     alignment and structure
Probab=100.00  E-value=6.1e-43  Score=262.92  Aligned_cols=173  Identities=43%  Similarity=0.627  Sum_probs=157.5

Q ss_pred             CCccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEEEcccCCCCCChhhhhhccCCCCCCCCccCCCCCcccccCCC
Q 045208            1 NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSPGKVGPAVKGSRGAELVDGLV   80 (176)
Q Consensus         1 ndF~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~   80 (176)
                      |||++|+|++.+++.+.++++|++|++++|+.|+||||+...+.|++.+...++...+... .++|++|++|++++|+|.
T Consensus        18 ~~f~~~~g~l~~~~~~~iv~~i~~L~~~ar~~g~pVi~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~gt~g~ei~~~l~   96 (204)
T 3hu5_A           18 NDFVLPGAPACVEGAMGTVPVIAGLLAKARAEGWMVLHVVRAHRADGSDAEKSREHLFLEG-GGLCVAGTPGAEIVAGLE   96 (204)
T ss_dssp             HHHHSTTSTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEECCBCTTSTTSCGGGGGGGSSS-CCSSBTTSGGGSBCTTCC
T ss_pred             hhhhCCCCcccccCHHHHHHHHHHHHHHHHHCCCeEEEEEcccCCCcccccccccccCCcc-cccccCCCcccccccccC
Confidence            6899999999999999999999999999999999999987777777766544433333222 367999999999999999


Q ss_pred             CCCCCeeeecCCCCccCCCChHHHHHhCCCCe-----eecChhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHH
Q 045208           81 IREGDYKLVKTRFSAFFATHLHSFLQGAGVDS-----VQTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVD  155 (176)
Q Consensus        81 ~~~~d~v~~K~~~saf~~t~l~~~L~~~~i~~-----~~t~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~~~l~~  155 (176)
                      |.++|.+|.|++||+|++|+|.++|+++||++     ++|++||++|+++|+++||+ |+|++|||++++++.|+.+|+.
T Consensus        97 ~~~~~~vi~K~~~saF~~t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~da~~~Gy~-V~vv~Da~as~~~~~h~~al~~  175 (204)
T 3hu5_A           97 PASGETVLVKTRFSAFMGTECDMLLRRRGVDTLLVSGTQYPNCIRGTAVDAFALDYD-VVVVTDACSARTPGVAESNIND  175 (204)
T ss_dssp             CCTTCEEEECSSSSTTTTSSHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCE-EEEEEEEEECSSHHHHHHHHHH
T ss_pred             CCCCCEEEECCccCCCCCcCHHHHHHhCCCCeEEEeeeccchHHHHHHHHHHHCCCE-EEEehhhhCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999     99999999999999999999 9999999999999999999999


Q ss_pred             HHhcCcEeeeHHHHHHHhhc
Q 045208          156 MKNFGIATATLQEWSERVAD  175 (176)
Q Consensus       156 l~~~g~~v~~~~e~~~~l~~  175 (176)
                      |...|++|++++|+++.|..
T Consensus       176 m~~~g~~v~tt~e~l~~l~~  195 (204)
T 3hu5_A          176 MRAMGITCVPLTALDDVLAR  195 (204)
T ss_dssp             HHHHTCEEECGGGHHHHHHC
T ss_pred             HHHhCCEEEEHHHHHHHHHh
Confidence            99999999999999998863
>3hb7_A Isochorismatase hydrolase; PS structural genomics, midwest center for structural genomics structure initiative; 2.30A {Alkaliphilus metalliredigens} Back     alignment and structure
>3irv_A Cysteine hydrolase; structural genomics, PSI-2, protein structure initiative, CY hydrolase; 1.60A {Pseudomonas syringae PV} Back     alignment and structure
>3ot4_A Putative isochorismatase; NICF, maleamate hydrolase, hydrol; 2.40A {Bordetella bronchiseptica} PDB: 3uao_A Back     alignment and structure
>3eef_A N-carbamoylsarcosine amidase related protein; structural genomics, protein structure initiative, midwest center for structural genomics; 2.35A {Thermoplasma acidophilum} Back     alignment and structure
>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB: 3o90_A 3o91_A* 3o92_A* 3o93_A* 3s2s_A Back     alignment and structure
>3kl2_A Putative isochorismatase; structural genomics, unknown function, PSI-2, protein struct initiative; 2.30A {Streptomyces avermitilis} SCOP: c.33.1.0 Back     alignment and structure
>1nba_A N-carbamoylsarcosine amidohydrolase; hydrolase(IN linear amides); 2.00A {Arthrobacter SP} SCOP: c.33.1.3 Back     alignment and structure
>3tg2_A Vibriobactin-specific isochorismatase; hydrolase; HET: ISC PGE; 1.10A {Vibrio cholerae} PDB: 3tb4_A* Back     alignment and structure
>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic; 2.68A {Leishmania infantum} Back     alignment and structure
>1j2r_A Hypothetical isochorismatase family protein YECD; parallel beta-sheet 3-2-1-4-5-6, alpha-beta-alpha motif, TET structural genomics; 1.30A {Escherichia coli} SCOP: c.33.1.3 Back     alignment and structure
>3mcw_A Putative hydrolase; isochorismatase family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.06A {Chromobacterium violaceum} Back     alignment and structure
>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A Back     alignment and structure
>3oqp_A Putative isochorismatase; catalytic triad, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.22A {Burkholderia xenovorans} Back     alignment and structure
>4h17_A Hydrolase, isochorismatase family; rossmann-like fold, structural genomics, joint center for ST genomics, JCSG; 1.60A {Pseudomonas putida KT2440} Back     alignment and structure
>1nf9_A Phenazine biosynthesis protein PHZD; isochorismatase, enzyme, phenazine pathway, hydrolase; HET: BOG; 1.50A {Pseudomonas aeruginosa} SCOP: c.33.1.3 PDB: 1nf8_A* 3r77_A* Back     alignment and structure
>3v8e_A Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccharomyces cerevisiae} PDB: 2h0r_A Back     alignment and structure
>2wt9_A Nicotinamidase; hydrolase, pyrazinamidase; HET: GOL; 1.65A {Acinetobacter baumannii} PDB: 2wta_A* Back     alignment and structure
>3txy_A Isochorismatase family protein family; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.70A {Burkholderia thailandensis} SCOP: c.33.1.0 Back     alignment and structure
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli} Back     alignment and structure
>2a67_A Isochorismatase family protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.00A {Enterococcus faecalis} Back     alignment and structure
>1yac_A Ycacgp, YCAC gene product; unknown bacterial hydrolase, three layer alpha-beta-alpha SA topology, ENTB homolog, cshase homolog; 1.80A {Escherichia coli} SCOP: c.33.1.3 Back     alignment and structure
>2b34_A F35G2.2, MAR1 ribonuclease; isochorismatase family, structural genomics, PSI, protein structure initiative; 2.14A {Caenorhabditis elegans} Back     alignment and structure
>1yzv_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.00A {Trypanosoma cruzi} Back     alignment and structure
>1x9g_A Putative MAR1; structural genomics, protein structure initiative, SGPP, PSI structural genomics of pathogenic protozoa consortium; 2.41A {Leishmania donovani} SCOP: c.33.1.3 PDB: 1xn4_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 176
d1nbaa_253 c.33.1.3 (A:) N-carbamoylsarcosine amidohydrolase 2e-20
d1j2ra_188 c.33.1.3 (A:) Hypothetical protein YecD {Escherich 2e-19
d1nf9a_207 c.33.1.3 (A:) Phenazine biosynthesis protein PhzD 4e-19
d1im5a_179 c.33.1.3 (A:) Pyrazinamidase/nicotinamidase {Archa 8e-19
d1yaca_204 c.33.1.3 (A:) YcaC {Escherichia coli [TaxId: 562]} 2e-14
d1x9ga_192 c.33.1.3 (A:) Ribonuclease MAR1 {Leishmania donova 6e-14
>d1nbaa_ c.33.1.3 (A:) N-carbamoylsarcosine amidohydrolase {Arthrobacter sp. [TaxId: 1667]} Length = 253 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Isochorismatase-like hydrolases
superfamily: Isochorismatase-like hydrolases
family: Isochorismatase-like hydrolases
domain: N-carbamoylsarcosine amidohydrolase
species: Arthrobacter sp. [TaxId: 1667]

 Score = 82.9 bits (204), Expect = 2e-20
 Identities = 41/182 (22%), Positives = 68/182 (37%), Gaps = 11/182 (6%)

Query: 1   NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRDVELFRRHRYSP 60
           N +          G + I+PNV R  E AR +G+ V +    +    RD           
Sbjct: 48  NAWTQPGHPFSCPGMETIIPNVQRINEAARAKGVPVFYTTNVYRN--RDASSGTNDMGLW 105

Query: 61  GKVGPA---VKGSRGAELVDGLVIREGDYKLVKTRFSAFFATHLHSFLQGAGVDSV---- 113
               P       S  A++ D +   +G+  + K R SAF  T+L  FL    +D++    
Sbjct: 106 YSKIPTETLPADSYWAQIDDRIAPADGEVVIEKNRASAFPGTNLELFLTSNRIDTLIVTG 165

Query: 114 -QTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHAANIVDMKNFGIATATLQEWSER 172
                C+R T  DAIA  ++   +  +      P V   N+ D+ N      +     + 
Sbjct: 166 ATAAGCVRHTVEDAIAKGFR-PIIPRETIGDRVPGVVQWNLYDIDNKFGDVESTDSVVQY 224

Query: 173 VA 174
           + 
Sbjct: 225 LD 226
>d1j2ra_ c.33.1.3 (A:) Hypothetical protein YecD {Escherichia coli [TaxId: 562]} Length = 188 Back     information, alignment and structure
>d1nf9a_ c.33.1.3 (A:) Phenazine biosynthesis protein PhzD {Pseudomonas aeruginosa [TaxId: 287]} Length = 207 Back     information, alignment and structure
>d1im5a_ c.33.1.3 (A:) Pyrazinamidase/nicotinamidase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 179 Back     information, alignment and structure
>d1yaca_ c.33.1.3 (A:) YcaC {Escherichia coli [TaxId: 562]} Length = 204 Back     information, alignment and structure
>d1x9ga_ c.33.1.3 (A:) Ribonuclease MAR1 {Leishmania donovani [TaxId: 5661]} Length = 192 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query176
d1nbaa_253 N-carbamoylsarcosine amidohydrolase {Arthrobacter 100.0
d1j2ra_188 Hypothetical protein YecD {Escherichia coli [TaxId 100.0
d1nf9a_207 Phenazine biosynthesis protein PhzD {Pseudomonas a 100.0
d1im5a_179 Pyrazinamidase/nicotinamidase {Archaeon Pyrococcus 100.0
d1yaca_204 YcaC {Escherichia coli [TaxId: 562]} 99.97
d1x9ga_192 Ribonuclease MAR1 {Leishmania donovani [TaxId: 566 99.93
d2o8ra3188 Polyphosphate kinase, PPK {Porphyromonas gingivali 88.24
>d1nbaa_ c.33.1.3 (A:) N-carbamoylsarcosine amidohydrolase {Arthrobacter sp. [TaxId: 1667]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Isochorismatase-like hydrolases
superfamily: Isochorismatase-like hydrolases
family: Isochorismatase-like hydrolases
domain: N-carbamoylsarcosine amidohydrolase
species: Arthrobacter sp. [TaxId: 1667]

Probab=100.00  E-value=1.4e-41  Score=260.74  Aligned_cols=169  Identities=23%  Similarity=0.291  Sum_probs=153.6

Q ss_pred             CCccCCCCccccCCccchhHHHHHHHHHHHHCCCcEEEEEcccCCCCCC-----hhhhhhccCCCCCCCCccCCCCCccc
Q 045208            1 NDFIADDGLVKMDGGKVILPNVIRAVEIARQRGILVVWVVREHNPLGRD-----VELFRRHRYSPGKVGPAVKGSRGAEL   75 (176)
Q Consensus         1 ndF~~~~g~l~~~~~~~ii~~i~~li~~~r~~~~~Vi~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~   75 (176)
                      |||++|+|++.+++.+.+++++++|+++||++|+||||+++.|.+++.+     ++.|..+.    +...+..|++|+++
T Consensus        48 ndF~~p~~~~~~~~~~~iv~~i~~Li~aaR~~gipVI~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~gt~ga~i  123 (253)
T d1nbaa_          48 NAWTQPGHPFSCPGMETIIPNVQRINEAARAKGVPVFYTTNVYRNRDASSGTNDMGLWYSKI----PTETLPADSYWAQI  123 (253)
T ss_dssp             HHHHSSSSTTCCSCHHHHHHHHHHHHHHHHHHTCCEEEEEECBSCCCTTSTTCSCGGGGGTS----CGGGCBTTSGGGSB
T ss_pred             ccccCCCCcccccCHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCcccccccccccccccc----CccccCCCCccccc
Confidence            7899999999999999999999999999999999999999988776532     22333221    12357889999999


Q ss_pred             ccCCCCCCCCeeeecCCCCccCCCChHHHHHhCCCCe-----eecChhhHHHHHHHHhCCCCcEEEeccccCCCCHHHHH
Q 045208           76 VDGLVIREGDYKLVKTRFSAFFATHLHSFLQGAGVDS-----VQTPNCIRQTAFDAIALDYQPVTVVVDATAAATPDVHA  150 (176)
Q Consensus        76 ~~~l~~~~~d~v~~K~~~saf~~t~l~~~L~~~~i~~-----~~t~~CV~~Ta~~a~~~g~~~v~vv~Da~~~~~~~~h~  150 (176)
                      +|+|.|.++|++|.|++||+|++|+|..+|+++||++     ++||+||++|+++|+++||+ |+|++|||++++++.|+
T Consensus       124 ~~~l~p~~~d~vi~K~~~SaF~~T~L~~~Lr~~gI~~liv~Gv~Td~CV~~Ta~dA~~~Gy~-V~Vv~DA~as~~~e~h~  202 (253)
T d1nbaa_         124 DDRIAPADGEVVIEKNRASAFPGTNLELFLTSNRIDTLIVTGATAAGCVRHTVEDAIAKGFR-PIIPRETIGDRVPGVVQ  202 (253)
T ss_dssp             CGGGCCCTTCEEEEESSSSSSTTSSHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHHTCE-EEEEGGGEECSSSSHHH
T ss_pred             ccccCCCCCCeeeeccccccccCccHHHHHhhhccceEEEEeecccchHHHHHHHHHHCCCE-EEEeccccCCCCHHHHH
Confidence            9999999999999999999999999999999999999     99999999999999999999 99999999999999999


Q ss_pred             HHHHHHHhcCcEeeeHHHHHHHhh
Q 045208          151 ANIVDMKNFGIATATLQEWSERVA  174 (176)
Q Consensus       151 ~~l~~l~~~g~~v~~~~e~~~~l~  174 (176)
                      .+|..|...++.|++++|+++.|.
T Consensus       203 ~aL~~m~~~~g~V~~t~eil~~L~  226 (253)
T d1nbaa_         203 WNLYDIDNKFGDVESTDSVVQYLD  226 (253)
T ss_dssp             HHHHHHHHHTCEEECHHHHHHHHH
T ss_pred             HHHHHHHhcCCEEecHHHHHHHHH
Confidence            999999998889999999998874
>d1j2ra_ c.33.1.3 (A:) Hypothetical protein YecD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nf9a_ c.33.1.3 (A:) Phenazine biosynthesis protein PhzD {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1im5a_ c.33.1.3 (A:) Pyrazinamidase/nicotinamidase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1yaca_ c.33.1.3 (A:) YcaC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x9ga_ c.33.1.3 (A:) Ribonuclease MAR1 {Leishmania donovani [TaxId: 5661]} Back     information, alignment and structure
>d2o8ra3 d.136.1.4 (A:318-505) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure