Citrus Sinensis ID: 045217

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
MFVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI
ccccccccEEEEccccHHHHHHHHHHHHHHHcccccccEEEEEEEEEccEEEEEEEEccccccHHHHHHHHHHHHccccEEEEEEEEEEccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccc
cHHHHHHHHcccccccHHHHHHEEHHHHHHHHcccccEEEEEEEEEccccEEEEEEEccccccHHHHHHHHHHHHccccEEEEEEEcccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccEEEcccccccccccccHHHHHHHHHccccHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccc
MFVAVVTLILIygpcqtptlgfCVQRYLQitsfkpekfwtlhpylvQNGYELKLEWERQKLFDFDVATMFQKLVMQDRILEVIDisekqeskvrpcglntVNLLKVASSALGYGPQMAMQLAERLYTQgfisyprtestaypssfdfrgtlsalannpvwGDYVERLLAEgyakprsgtdagdhppitpmrsatedmlGKDAWRLYSYVCQHFlgtvspdckyi
MFVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQKLVMQDRILEVIDisekqeskvrpcglnTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKprsgtdagdhppiTPMRSATEDMLGKDAWRLYSYVCQHFlgtvspdckYI
MFVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI
*FVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGY*************************LGKDAWRLYSYVCQHFLGTVSP*****
MFVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQKLVMQDRILE***************GLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLL*************GDHPPITPMRSATE**LGKDAWRLYSYVCQHFLGTVSPDCKYI
MFVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI
MFVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAE*******************MRS*TEDMLGKDAWRLYSYVCQHFLGTVSPDCK*I
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MFVAVVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query224 2.2.26 [Sep-21-2011]
Q9Z321 862 DNA topoisomerase 3-beta- yes no 0.964 0.250 0.571 1e-71
O95985 862 DNA topoisomerase 3-beta- yes no 0.964 0.250 0.566 2e-71
O96651 875 DNA topoisomerase 3-beta yes no 0.946 0.242 0.474 4e-56
O61660 759 DNA topoisomerase 3 OS=Ca no no 0.950 0.280 0.353 5e-38
Q8T2T7 828 DNA topoisomerase 3 OS=Di yes no 0.933 0.252 0.381 5e-37
O60126 622 DNA topoisomerase 3 OS=Sc yes no 0.955 0.344 0.351 7e-36
O70157 1003 DNA topoisomerase 3-alpha no no 0.982 0.219 0.361 4e-35
Q13472 1001 DNA topoisomerase 3-alpha no no 0.982 0.219 0.357 1e-34
Q9NG98 1250 DNA topoisomerase 3-alpha no no 0.946 0.169 0.345 8e-30
P13099 656 DNA topoisomerase 3 OS=Sa yes no 0.955 0.326 0.340 1e-29
>sp|Q9Z321|TOP3B_MOUSE DNA topoisomerase 3-beta-1 OS=Mus musculus GN=Top3b PE=2 SV=1 Back     alignment and function desciption
 Score =  269 bits (688), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 124/217 (57%), Positives = 163/217 (75%), Gaps = 1/217 (0%)

Query: 9   ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYE-LKLEWERQKLFDFDVA 67
           ++ +GPCQTPTLGFCV+R+ +I SFKPE +W L   +  +  E L L+W+R ++FD+++A
Sbjct: 211 LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVHTDKEESLLLDWDRVRVFDWEIA 270

Query: 68  TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
            MF  +   ++   V   S K+++K RP  LNTV +L+VASSALG GPQ AMQ+AERLYT
Sbjct: 271 QMFLNMTKLEKEAWVEATSRKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQIAERLYT 330

Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPI 187
           QG+ISYPRTE+T YP +FD +G+L   AN+P W D V++LLAEG  +PR G DAGDHPPI
Sbjct: 331 QGYISYPRTETTHYPENFDLKGSLRQQANHPYWADSVKQLLAEGINRPRKGHDAGDHPPI 390

Query: 188 TPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
           TPM+SATE  LG DAWRLY Y+ +HF+ TVS DCKY+
Sbjct: 391 TPMKSATEAELGGDAWRLYEYITRHFIATVSHDCKYL 427
Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand than undergoes passage around the unbroken strand thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone (By similarity). Possesses negatively supercoiled DNA relaxing activity.
Mus musculus (taxid: 10090)
EC: 5EC: .EC: 9EC: 9EC: .EC: 1EC: .EC: 2
>sp|O95985|TOP3B_HUMAN DNA topoisomerase 3-beta-1 OS=Homo sapiens GN=TOP3B PE=1 SV=1 Back     alignment and function description
>sp|O96651|TOP3B_DROME DNA topoisomerase 3-beta OS=Drosophila melanogaster GN=Top3beta PE=2 SV=2 Back     alignment and function description
>sp|O61660|TOP3_CAEEL DNA topoisomerase 3 OS=Caenorhabditis elegans GN=top-3 PE=2 SV=1 Back     alignment and function description
>sp|Q8T2T7|TOP3_DICDI DNA topoisomerase 3 OS=Dictyostelium discoideum GN=top3 PE=3 SV=1 Back     alignment and function description
>sp|O60126|TOP3_SCHPO DNA topoisomerase 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=top3 PE=1 SV=2 Back     alignment and function description
>sp|O70157|TOP3A_MOUSE DNA topoisomerase 3-alpha OS=Mus musculus GN=Top3a PE=1 SV=1 Back     alignment and function description
>sp|Q13472|TOP3A_HUMAN DNA topoisomerase 3-alpha OS=Homo sapiens GN=TOP3A PE=1 SV=1 Back     alignment and function description
>sp|Q9NG98|TOP3A_DROME DNA topoisomerase 3-alpha OS=Drosophila melanogaster GN=Top3alpha PE=2 SV=2 Back     alignment and function description
>sp|P13099|TOP3_YEAST DNA topoisomerase 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TOP3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query224
359478029 894 PREDICTED: DNA topoisomerase 3-beta-1-li 0.964 0.241 0.805 1e-106
296089603 837 unnamed protein product [Vitis vinifera] 0.964 0.258 0.805 1e-105
224131522 837 predicted protein [Populus trichocarpa] 0.959 0.256 0.823 1e-105
356540116 863 PREDICTED: DNA topoisomerase 3-beta-1-li 0.964 0.250 0.796 1e-104
255550676 865 prokaryotic DNA topoisomerase, putative 0.964 0.249 0.800 1e-103
449459882 867 PREDICTED: DNA topoisomerase 3-beta-1-li 0.964 0.249 0.782 1e-100
449498877 864 PREDICTED: DNA topoisomerase 3-beta-1-li 0.964 0.25 0.782 1e-100
357462899 1024 DNA topoisomerase [Medicago truncatula] 0.950 0.208 0.793 1e-100
297826655 865 DNA topoisomerase family protein [Arabid 0.964 0.249 0.745 2e-97
42569543 865 DNA topoisomerase III [Arabidopsis thali 0.964 0.249 0.75 5e-97
>gi|359478029|ref|XP_002264970.2| PREDICTED: DNA topoisomerase 3-beta-1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  388 bits (997), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 174/216 (80%), Positives = 192/216 (88%)

Query: 9   ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
           ++ YGPCQTPTLGFCVQRYLQI +FKPEKFW LHPY+  NGYEL+LEWER KLFD DVA 
Sbjct: 234 VISYGPCQTPTLGFCVQRYLQINTFKPEKFWALHPYITHNGYELQLEWERNKLFDLDVAV 293

Query: 69  MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
           MFQ LVM+D I+EV DISEKQESK RP GLNTVNLLKVASSALG+GPQMAMQLAERLYTQ
Sbjct: 294 MFQNLVMEDGIVEVTDISEKQESKSRPSGLNTVNLLKVASSALGFGPQMAMQLAERLYTQ 353

Query: 129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
           GFISYPRTESTAYPSSFDF+ TL    NNP WGDYV++LL +G+ +PRSGTDAGDHPPIT
Sbjct: 354 GFISYPRTESTAYPSSFDFKSTLGMQTNNPTWGDYVQKLLDDGFHRPRSGTDAGDHPPIT 413

Query: 189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
           PMR+A EDMLG DAW+LY YVCQHF+GTVSPDCKY+
Sbjct: 414 PMRAANEDMLGNDAWKLYQYVCQHFIGTVSPDCKYV 449

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296089603|emb|CBI39422.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224131522|ref|XP_002321105.1| predicted protein [Populus trichocarpa] gi|222861878|gb|EEE99420.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356540116|ref|XP_003538536.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Glycine max] Back     alignment and taxonomy information
>gi|255550676|ref|XP_002516387.1| prokaryotic DNA topoisomerase, putative [Ricinus communis] gi|223544485|gb|EEF46004.1| prokaryotic DNA topoisomerase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449459882|ref|XP_004147675.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449498877|ref|XP_004160658.1| PREDICTED: DNA topoisomerase 3-beta-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357462899|ref|XP_003601731.1| DNA topoisomerase [Medicago truncatula] gi|355490779|gb|AES71982.1| DNA topoisomerase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297826655|ref|XP_002881210.1| DNA topoisomerase family protein [Arabidopsis lyrata subsp. lyrata] gi|297327049|gb|EFH57469.1| DNA topoisomerase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42569543|ref|NP_180760.2| DNA topoisomerase III [Arabidopsis thaliana] gi|330253525|gb|AEC08619.1| DNA topoisomerase III [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query224
TAIR|locus:2045517 865 AT2G32000 [Arabidopsis thalian 0.964 0.249 0.75 1.2e-90
MGI|MGI:1333803 862 Top3b "topoisomerase (DNA) III 0.964 0.250 0.571 3.6e-66
ZFIN|ZDB-GENE-070705-37 862 top3b "topoisomerase (DNA) III 0.964 0.250 0.545 4.5e-66
UNIPROTKB|H0Y6W0 525 TOP3B "DNA topoisomerase" [Hom 0.964 0.411 0.566 5.8e-66
UNIPROTKB|O95985 862 TOP3B "DNA topoisomerase 3-bet 0.964 0.250 0.566 5.8e-66
UNIPROTKB|E2R770 862 TOP3B "DNA topoisomerase" [Can 0.964 0.250 0.566 9.4e-66
UNIPROTKB|F1RL05 859 TOP3B "DNA topoisomerase" [Sus 0.964 0.251 0.566 9.4e-66
RGD|1309468 862 Top3b "topoisomerase (DNA) III 0.964 0.250 0.571 9.4e-66
UNIPROTKB|E1BQG8 863 TOP3B "DNA topoisomerase" [Gal 0.964 0.250 0.548 1.1e-64
UNIPROTKB|Q5ZK71 862 TOP3B "DNA topoisomerase" [Gal 0.964 0.250 0.548 1.1e-64
TAIR|locus:2045517 AT2G32000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
 Identities = 162/216 (75%), Positives = 189/216 (87%)

Query:     9 ILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVAT 68
             ++ YGPCQTPTLGFCVQRY+ I +FKPEKFW L PY+ ++GYEL+LEWER++LFD + AT
Sbjct:   207 VISYGPCQTPTLGFCVQRYMHINTFKPEKFWALRPYIRKDGYELQLEWERRRLFDLEAAT 266

Query:    69 MFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ 128
             +FQKLV++ R  +V+D+SEKQE K RP GLNTVNLLKVASSALG+GPQ AM LAERLYTQ
Sbjct:   267 VFQKLVVEGRTAKVMDVSEKQEVKGRPAGLNTVNLLKVASSALGFGPQTAMHLAERLYTQ 326

Query:   129 GFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAGDHPPIT 188
             GFISYPRTESTAYPSSFDF  TL A  +NPVWG YV+RLL++G+  P+SGTDAGDHPPIT
Sbjct:   327 GFISYPRTESTAYPSSFDFTDTLRAQVSNPVWGGYVQRLLSDGFHMPKSGTDAGDHPPIT 386

Query:   189 PMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI 224
             PMR+ATE M+G DAWRLY YVCQHFLGTVSP+CKYI
Sbjct:   387 PMRAATEVMVGGDAWRLYQYVCQHFLGTVSPNCKYI 422
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0003916 "DNA topoisomerase activity" evidence=IEA
GO:0003917 "DNA topoisomerase type I activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005694 "chromosome" evidence=IEA
GO:0006265 "DNA topological change" evidence=IEA;ISS
GO:0006268 "DNA unwinding involved in replication" evidence=ISS
GO:0048573 "photoperiodism, flowering" evidence=RCA
MGI|MGI:1333803 Top3b "topoisomerase (DNA) III beta" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070705-37 top3b "topoisomerase (DNA) III beta" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|H0Y6W0 TOP3B "DNA topoisomerase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|O95985 TOP3B "DNA topoisomerase 3-beta-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2R770 TOP3B "DNA topoisomerase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1RL05 TOP3B "DNA topoisomerase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1309468 Top3b "topoisomerase (DNA) III beta" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BQG8 TOP3B "DNA topoisomerase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZK71 TOP3B "DNA topoisomerase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer5.99.1.2LOW CONFIDENCE prediction!
3rd Layer5.99.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00033522001
RecName- Full=DNA topoisomerase; EC=5.99.1.2; (847 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00000640001
RecName- Full=DNA topoisomerase 2; EC=5.99.1.3; (661 aa)
      • 0.639
GSVIVG00023062001
SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (453 aa)
      • 0.585
GSVIVG00024669001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (673 aa)
      • 0.569
GSVIVG00033901001
SubName- Full=Chromosome undetermined scaffold_71, whole genome shotgun sequence; (396 aa)
      • 0.566
GSVIVG00033355001
SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (362 aa)
      • 0.522
GSVIVG00022496001
SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (330 aa)
   •  • 0.512
GSVIVG00025187001
RecName- Full=Transthyretin; (334 aa)
      • 0.480
GSVIVG00020369001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (555 aa)
•       0.477
GSVIVG00006013001
RecName- Full=DNA polymerase; EC=2.7.7.7; (1126 aa)
  ••  • 0.459
GSVIVG00028763001
RecName- Full=DNA topoisomerase 2; EC=5.99.1.3;; Control of topological states of DNA by transi [...] (1489 aa)
      • 0.434

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query224
PRK07219 822 PRK07219, PRK07219, DNA topoisomerase I; Validated 1e-54
cd00186 381 cd00186, TOP1Ac, DNA Topoisomerase, subtype IA; DN 3e-52
pfam01131 365 pfam01131, Topoisom_bac, DNA topoisomerase 7e-47
COG0550 570 COG0550, TopA, Topoisomerase IA [DNA replication, 3e-45
PRK07220 740 PRK07220, PRK07220, DNA topoisomerase I; Validated 2e-41
PRK05776 670 PRK05776, PRK05776, DNA topoisomerase I; Provision 1e-38
PRK14973 936 PRK14973, PRK14973, DNA topoisomerase I; Provision 1e-36
TIGR01057 618 TIGR01057, topA_arch, DNA topoisomerase I, archaea 1e-33
smart00437 259 smart00437, TOP1Ac, Bacterial DNA topoisomerase I 6e-33
PRK09401 1176 PRK09401, PRK09401, reverse gyrase; Reviewed 8e-15
TIGR01054 1171 TIGR01054, rgy, reverse gyrase 2e-14
TIGR01051 610 TIGR01051, topA_bact, DNA topoisomerase I, bacteri 5e-13
COG1110 1187 COG1110, COG1110, Reverse gyrase [DNA replication, 7e-13
PRK07726 658 PRK07726, PRK07726, DNA topoisomerase III; Provisi 7e-13
PRK05582 650 PRK05582, PRK05582, DNA topoisomerase I; Validated 2e-12
TIGR01056 660 TIGR01056, topB, DNA topoisomerase III, bacteria a 2e-11
smart0043689 smart00436, TOP1Bc, Bacterial DNA topoisomeraes I 3e-10
PRK08780 780 PRK08780, PRK08780, DNA topoisomerase I; Provision 8e-10
PRK06599 675 PRK06599, PRK06599, DNA topoisomerase I; Validated 2e-09
PRK08173 862 PRK08173, PRK08173, DNA topoisomerase III; Validat 3e-09
PRK07561 859 PRK07561, PRK07561, DNA topoisomerase I subunit om 6e-09
PRK14724 987 PRK14724, PRK14724, DNA topoisomerase III; Provisi 1e-07
PRK14701 1638 PRK14701, PRK14701, reverse gyrase; Provisional 8e-04
>gnl|CDD|235971 PRK07219, PRK07219, DNA topoisomerase I; Validated Back     alignment and domain information 
 Score =  186 bits (474), Expect = 1e-54
 Identities = 70/217 (32%), Positives = 112/217 (51%), Gaps = 7/217 (3%)

Query: 13  GPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEW----ERQKLFDFDVA- 67
           G  QTPTL F V R  +I +F PE +W +   L +       +     E +K +D + A 
Sbjct: 195 GRVQTPTLAFIVDREREIRAFDPEDYWKIEALLDKEAQYFYRDLIGGHEAEKFWDEEEAE 254

Query: 68  TMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT 127
            +++KL    +   V  + +++ +   P   NT   L+ AS   G  P+ AM++AE+LYT
Sbjct: 255 EIYEKL-KGAKEATVSSVKKRERTISPPAPFNTTEFLREASKIFGISPKRAMEIAEKLYT 313

Query: 128 QGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERLLAEGYAKPRSG-TDAGDHPP 186
            G+ISYPRT++T YP   D +  L  L+    +G Y E +L +   KP  G  +  DHPP
Sbjct: 314 AGYISYPRTDNTVYPDDLDPKELLKKLSKKKEYGPYAESILEQENIKPTEGKKETTDHPP 373

Query: 187 ITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
           I P+     + L  D W++Y  + + FL T++   ++
Sbjct: 374 IHPVDVPKREELSDDEWKVYELIVRRFLATLADPAEW 410

Length = 822
>gnl|CDD|238110 cd00186, TOP1Ac, DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA topoisomerases I and III, and eukaryotic DNA topoisomerase III and eubacterial and archael reverse gyrases Back     alignment and domain information
>gnl|CDD|216317 pfam01131, Topoisom_bac, DNA topoisomerase Back     alignment and domain information
>gnl|CDD|223624 COG0550, TopA, Topoisomerase IA [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|180892 PRK07220, PRK07220, DNA topoisomerase I; Validated Back     alignment and domain information
>gnl|CDD|235602 PRK05776, PRK05776, DNA topoisomerase I; Provisional Back     alignment and domain information
>gnl|CDD|184936 PRK14973, PRK14973, DNA topoisomerase I; Provisional Back     alignment and domain information
>gnl|CDD|233253 TIGR01057, topA_arch, DNA topoisomerase I, archaeal Back     alignment and domain information
>gnl|CDD|214663 smart00437, TOP1Ac, Bacterial DNA topoisomerase I DNA-binding domain Back     alignment and domain information
>gnl|CDD|236498 PRK09401, PRK09401, reverse gyrase; Reviewed Back     alignment and domain information
>gnl|CDD|233251 TIGR01054, rgy, reverse gyrase Back     alignment and domain information
>gnl|CDD|233249 TIGR01051, topA_bact, DNA topoisomerase I, bacterial Back     alignment and domain information
>gnl|CDD|224035 COG1110, COG1110, Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|236078 PRK07726, PRK07726, DNA topoisomerase III; Provisional Back     alignment and domain information
>gnl|CDD|235516 PRK05582, PRK05582, DNA topoisomerase I; Validated Back     alignment and domain information
>gnl|CDD|233252 TIGR01056, topB, DNA topoisomerase III, bacteria and conjugative plasmid Back     alignment and domain information
>gnl|CDD|214662 smart00436, TOP1Bc, Bacterial DNA topoisomeraes I ATP-binding domain Back     alignment and domain information
>gnl|CDD|181555 PRK08780, PRK08780, DNA topoisomerase I; Provisional Back     alignment and domain information
>gnl|CDD|235840 PRK06599, PRK06599, DNA topoisomerase I; Validated Back     alignment and domain information
>gnl|CDD|236172 PRK08173, PRK08173, DNA topoisomerase III; Validated Back     alignment and domain information
>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated Back     alignment and domain information
>gnl|CDD|237803 PRK14724, PRK14724, DNA topoisomerase III; Provisional Back     alignment and domain information
>gnl|CDD|237791 PRK14701, PRK14701, reverse gyrase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 224
PRK05776 670 DNA topoisomerase I; Provisional 100.0
TIGR01057 618 topA_arch DNA topoisomerase I, archaeal. This mode 100.0
PRK08173 862 DNA topoisomerase III; Validated 100.0
PRK07219 822 DNA topoisomerase I; Validated 100.0
PRK07220 740 DNA topoisomerase I; Validated 100.0
TIGR01056 660 topB DNA topoisomerase III, bacteria and conjugati 100.0
PRK14724 987 DNA topoisomerase III; Provisional 100.0
PRK14973 936 DNA topoisomerase I; Provisional 100.0
PRK07726 658 DNA topoisomerase III; Provisional 100.0
COG0550 570 TopA Topoisomerase IA [DNA replication, recombinat 100.0
PF01131 403 Topoisom_bac: DNA topoisomerase; InterPro: IPR0134 100.0
TIGR01051 610 topA_bact DNA topoisomerase I, bacterial. This mod 100.0
PRK05582 650 DNA topoisomerase I; Validated 100.0
PRK08780 780 DNA topoisomerase I; Provisional 100.0
cd00186 381 TOP1Ac DNA Topoisomerase, subtype IA; DNA-binding, 100.0
PRK07561 859 DNA topoisomerase I subunit omega; Validated 100.0
PRK06599 675 DNA topoisomerase I; Validated 100.0
PTZ00407 805 DNA topoisomerase IA; Provisional 100.0
PRK06319 860 DNA topoisomerase I/SWI domain fusion protein; Val 100.0
PRK09401 1176 reverse gyrase; Reviewed 100.0
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 100.0
KOG1956 758 consensus DNA topoisomerase III alpha [Replication 100.0
smart00437 259 TOP1Ac Bacterial DNA topoisomerase I DNA-binding d 100.0
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 100.0
PRK14701 1638 reverse gyrase; Provisional 99.95
KOG1957 555 consensus DNA topoisomerase III beta [Replication, 99.85
PRK14701 1638 reverse gyrase; Provisional 99.56
smart0043689 TOP1Bc Bacterial DNA topoisomeraes I ATP-binding d 99.56
PF01131403 Topoisom_bac: DNA topoisomerase; InterPro: IPR0134 96.85
smart00437259 TOP1Ac Bacterial DNA topoisomerase I DNA-binding d 96.72
TIGR01051610 topA_bact DNA topoisomerase I, bacterial. This mod 96.01
cd00186381 TOP1Ac DNA Topoisomerase, subtype IA; DNA-binding, 95.98
PRK07219 822 DNA topoisomerase I; Validated 95.9
PRK05582650 DNA topoisomerase I; Validated 95.43
TIGR01057618 topA_arch DNA topoisomerase I, archaeal. This mode 95.41
TIGR01056660 topB DNA topoisomerase III, bacteria and conjugati 95.15
PRK07220 740 DNA topoisomerase I; Validated 95.05
PRK06599675 DNA topoisomerase I; Validated 95.03
PRK14973 936 DNA topoisomerase I; Provisional 94.99
PRK05776670 DNA topoisomerase I; Provisional 94.98
PRK07726658 DNA topoisomerase III; Provisional 94.96
PRK08173 862 DNA topoisomerase III; Validated 94.35
PRK07561 859 DNA topoisomerase I subunit omega; Validated 93.82
PRK06319 860 DNA topoisomerase I/SWI domain fusion protein; Val 93.4
COG0550570 TopA Topoisomerase IA [DNA replication, recombinat 92.74
PRK14724 987 DNA topoisomerase III; Provisional 92.3
PRK08780 780 DNA topoisomerase I; Provisional 91.55
TIGR0264777 DNA conserved hypothetical protein TIGR02647. Memb 90.99
TIGR00373158 conserved hypothetical protein TIGR00373. This fam 90.61
PF0825911 Periviscerokin: Periviscerokinin family; InterPro: 89.49
PRK06266178 transcription initiation factor E subunit alpha; V 88.66
PF02002105 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024 88.54
COG1675176 TFA1 Transcription initiation factor IIE, alpha su 82.57
PF1341248 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 81.65
PRK094011176 reverse gyrase; Reviewed 81.28
PTZ00407805 DNA topoisomerase IA; Provisional 80.39
>PRK05776 DNA topoisomerase I; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.3e-63  Score=479.37  Aligned_cols=216  Identities=30%  Similarity=0.507  Sum_probs=195.6

Q ss_pred             CccccCcchhHHHHHHHHHHHHHHcCcCcceEEEEEEEEecCeEEEEEEeccccCCHHHHHHHHHHHccCCceEEEEEee
Q 045217            8 LILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQNGYELKLEWERQKLFDFDVATMFQKLVMQDRILEVIDISE   87 (224)
Q Consensus         8 ~~lS~GRVQTPtL~lIv~Re~eI~~F~p~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~V~~v~~   87 (224)
                      .++|+||||||||+|||+||+||++|+|++||+|.+.+..+++.|.+.|..++++|+++|+.+.+.+.+.+.++|++|++
T Consensus       188 ~~lS~GRVQsptL~lVveRe~eI~~Fvp~~yw~i~~~~~~~~~~f~~~~~~~~~~~~~~a~~i~~~~~~~~~~~V~~v~~  267 (670)
T PRK05776        188 VILSAGRVQSPTLKYVVEREIERNLFVPLPYFSVSIIIEKNGYEFTLKYENKKFETKEEAKEILEEIKKTGYLKVTKVEV  267 (670)
T ss_pred             cceecceecCchhhHhHhhHHHHHcCCCCcceEEEEEEecCCceEEEEEcCCccCCHHHHHHHHHHhcCCCCEEEEEEEe
Confidence            47999999999999999999999999999999999999888888999998778999999999999997634799999999


Q ss_pred             ecccccCCCcccHHHHHHHHHHhCCCCHHHHHHHHHHHhhccceeccCCCCcccCCCcChHHHHHHHhcCCchHHHHHHH
Q 045217           88 KQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWGDYVERL  167 (224)
Q Consensus        88 k~~~~~pP~p~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~glITYPRTds~~l~~~~~~~~~l~~l~~~~~~~~~~~~~  167 (224)
                      ++++.+||+||||++||++||++|||||++||++||+|||+||||||||||++||+++++.++++.|.+.+.|+.++..+
T Consensus       268 k~~~~~pP~pf~ts~LQ~~As~~lg~sa~ktm~iAQ~LYe~glISYPRTDs~~ls~~~~~~~~~~~l~~~~~~~~~~~~~  347 (670)
T PRK05776        268 KIEILEPPPPFNLGDLQVEAARIYGFSPYKTQSIAEDLYLDGLISYPRTNSQKLPPTLNIRNILKGLSRSPQYRPLVNLL  347 (670)
T ss_pred             eeEEcCCCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCceecCCCccCCCChhhCHHHHHHHHhcchhHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999988889999998877788877766


Q ss_pred             hhc--CCCCCCCCCCC-CCCCCcccCCCCCcCCCCHHHHHHHHHHHHHHHHhcCcCcccC
Q 045217          168 LAE--GYAKPRSGTDA-GDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI  224 (224)
Q Consensus       168 ~~~--~~~~~~~~~k~-~aH~AI~PT~~~~~~~L~~~e~~iY~lI~~r~la~f~~~a~y~  224 (224)
                      +..  ...++++++++ +|||||+||+. .+++|+++|++||+|||+||||+||+||+|+
T Consensus       348 l~~~~~~~~~~~~~k~~~aH~AI~PT~~-~p~~L~~de~klY~LI~rRflA~~~~~a~~~  406 (670)
T PRK05776        348 LKETKGVLKPVQGPKDDPAHPAIYPTGE-PPKNLSKDEFKLYDLIVRRFLASFAAPAVLS  406 (670)
T ss_pred             hcccCCccccCCCCCCCCCCCCCCCCCC-CcccCCHHHHHHHHHHHHHHHHHhChhheEE
Confidence            542  23345555554 59999999998 4568999999999999999999999999984

>TIGR01057 topA_arch DNA topoisomerase I, archaeal Back     alignment and domain information
>PRK08173 DNA topoisomerase III; Validated Back     alignment and domain information
>PRK07219 DNA topoisomerase I; Validated Back     alignment and domain information
>PRK07220 DNA topoisomerase I; Validated Back     alignment and domain information
>TIGR01056 topB DNA topoisomerase III, bacteria and conjugative plasmid Back     alignment and domain information
>PRK14724 DNA topoisomerase III; Provisional Back     alignment and domain information
>PRK14973 DNA topoisomerase I; Provisional Back     alignment and domain information
>PRK07726 DNA topoisomerase III; Provisional Back     alignment and domain information
>COG0550 TopA Topoisomerase IA [DNA replication, recombination, and repair] Back     alignment and domain information
>PF01131 Topoisom_bac: DNA topoisomerase; InterPro: IPR013497 DNA topoisomerases regulate the number of topological links between two DNA strands (i Back     alignment and domain information
>TIGR01051 topA_bact DNA topoisomerase I, bacterial Back     alignment and domain information
>PRK05582 DNA topoisomerase I; Validated Back     alignment and domain information
>PRK08780 DNA topoisomerase I; Provisional Back     alignment and domain information
>cd00186 TOP1Ac DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA topoisomerases I and III, and eukaryotic DNA topoisomerase III and eubacterial and archael reverse gyrases Back     alignment and domain information
>PRK07561 DNA topoisomerase I subunit omega; Validated Back     alignment and domain information
>PRK06599 DNA topoisomerase I; Validated Back     alignment and domain information
>PTZ00407 DNA topoisomerase IA; Provisional Back     alignment and domain information
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>KOG1956 consensus DNA topoisomerase III alpha [Replication, recombination and repair] Back     alignment and domain information
>smart00437 TOP1Ac Bacterial DNA topoisomerase I DNA-binding domain Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>KOG1957 consensus DNA topoisomerase III beta [Replication, recombination and repair] Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>smart00436 TOP1Bc Bacterial DNA topoisomeraes I ATP-binding domain Back     alignment and domain information
>PF01131 Topoisom_bac: DNA topoisomerase; InterPro: IPR013497 DNA topoisomerases regulate the number of topological links between two DNA strands (i Back     alignment and domain information
>smart00437 TOP1Ac Bacterial DNA topoisomerase I DNA-binding domain Back     alignment and domain information
>TIGR01051 topA_bact DNA topoisomerase I, bacterial Back     alignment and domain information
>cd00186 TOP1Ac DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA topoisomerases I and III, and eukaryotic DNA topoisomerase III and eubacterial and archael reverse gyrases Back     alignment and domain information
>PRK07219 DNA topoisomerase I; Validated Back     alignment and domain information
>PRK05582 DNA topoisomerase I; Validated Back     alignment and domain information
>TIGR01057 topA_arch DNA topoisomerase I, archaeal Back     alignment and domain information
>TIGR01056 topB DNA topoisomerase III, bacteria and conjugative plasmid Back     alignment and domain information
>PRK07220 DNA topoisomerase I; Validated Back     alignment and domain information
>PRK06599 DNA topoisomerase I; Validated Back     alignment and domain information
>PRK14973 DNA topoisomerase I; Provisional Back     alignment and domain information
>PRK05776 DNA topoisomerase I; Provisional Back     alignment and domain information
>PRK07726 DNA topoisomerase III; Provisional Back     alignment and domain information
>PRK08173 DNA topoisomerase III; Validated Back     alignment and domain information
>PRK07561 DNA topoisomerase I subunit omega; Validated Back     alignment and domain information
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated Back     alignment and domain information
>COG0550 TopA Topoisomerase IA [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14724 DNA topoisomerase III; Provisional Back     alignment and domain information
>PRK08780 DNA topoisomerase I; Provisional Back     alignment and domain information
>TIGR02647 DNA conserved hypothetical protein TIGR02647 Back     alignment and domain information
>TIGR00373 conserved hypothetical protein TIGR00373 Back     alignment and domain information
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects Back     alignment and domain information
>PRK06266 transcription initiation factor E subunit alpha; Validated Back     alignment and domain information
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors Back     alignment and domain information
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription] Back     alignment and domain information
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>PTZ00407 DNA topoisomerase IA; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query224
1cy1_A 599 Complex Of E.Coli Dna Topoisomerase I With 5'ptptpt 3e-09
3pwt_A 596 Crystal Structure Of Mutant E.Coli Topoisomerase Ia 3e-09
1ecl_A 597 Amino Terminal 67kda Domain Of Escherichia Coli Dna 6e-09
1mw8_X 592 Crystal Structure Of A Complex Between H365r Mutant 2e-08
3px7_A 595 Crystal Structure Of Covalent Complex Of Topoisomer 3e-08
4ddt_A 1104 Thermotoga Maritima Reverse Gyrase, C2 Form 2 Lengt 4e-08
1cy9_A264 Crystal Structure Of The 30 Kda Fragment Of E. Coli 3e-06
2o19_A 659 Structure Of E. Coli Topoisomersae Iii In Complex W 5e-05
1d6m_A 653 Crystal Structure Of E. Coli Dna Topoisomerase Iii 5e-05
1i7d_A 659 Noncovalent Complex Of E.Coli Dna Topoisomerase Iii 1e-04
2gai_A 633 Structure Of Full Length Topoisomerase I From Therm 2e-04
>pdb|1CY1|A Chain A, Complex Of E.Coli Dna Topoisomerase I With 5'ptptpt Length = 599 Back     alignment and structure 
Iteration: 1

 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 99/231 (42%), Gaps = 30/231 (12%)
Query: 10  LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQ-NGYELKLEWERQKLFDFDVAT 68
           L  G  Q+  +   V+R  +I +F PE+FW +       +G  L L+   Q    F    
Sbjct: 193 LSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGEALALQVTHQNDKPFRPVN 252
Query: 69  MFQKL----VMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
             Q      +++     V++  +K  +        T  L + AS+ LG+G +  M +A+R
Sbjct: 253 KEQTQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQR 312
Query: 125 LYTQGFISYPRTESTAYPSSFDFRGTLSALANNPVWG----DYVERLLAEG---YAKPRS 177
           LY  G+I+Y RT+ST           LS  A N V G    ++ ++ L E    YA   +
Sbjct: 313 LYEAGYITYMRTDST----------NLSQDAVNMVRGYISDNFGKKYLPESPNQYASKEN 362
Query: 178 GTDAGDHPPITP-----MRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
             +A  H  I P     M  + +DM   DA +LY  + + F+       KY
Sbjct: 363 SQEA--HEAIRPSDVNVMAESLKDMEA-DAQKLYQLIWRQFVACQMTPAKY 410
>pdb|3PWT|A Chain A, Crystal Structure Of Mutant E.Coli Topoisomerase Ia Length = 596 Back     alignment and structure
>pdb|1ECL|A Chain A, Amino Terminal 67kda Domain Of Escherichia Coli Dna Topoisomerase I (Residues 2-590 Of Mature Protein) Cloning Artifact Adds Two Residues To The Amino-Terminus Which Were Not Observed In The Experimental Electron Density (Gly-2, Ser-1) Length = 597 Back     alignment and structure
>pdb|1MW8|X Chain X, Crystal Structure Of A Complex Between H365r Mutant Of 67 Kda N-Terminal Fragment Of E. Coli Dna Topoisomerase I And 5'-Acttcgggatg-3' Length = 592 Back     alignment and structure
>pdb|3PX7|A Chain A, Crystal Structure Of Covalent Complex Of Topoisomerase 1a With Substrate Length = 595 Back     alignment and structure
>pdb|4DDT|A Chain A, Thermotoga Maritima Reverse Gyrase, C2 Form 2 Length = 1104 Back     alignment and structure
>pdb|1CY9|A Chain A, Crystal Structure Of The 30 Kda Fragment Of E. Coli Dna Topoisomerase I. Monoclinic Form Length = 264 Back     alignment and structure
>pdb|2O19|A Chain A, Structure Of E. Coli Topoisomersae Iii In Complex With An 8- Base Single Stranded Oligonucleotide. Frozen In Glycerol At Ph 5.5 Length = 659 Back     alignment and structure
>pdb|1D6M|A Chain A, Crystal Structure Of E. Coli Dna Topoisomerase Iii Length = 653 Back     alignment and structure
>pdb|1I7D|A Chain A, Noncovalent Complex Of E.Coli Dna Topoisomerase Iii With An 8-Base Single-Stranded Dna Oligonucleotide Length = 659 Back     alignment and structure
>pdb|2GAI|A Chain A, Structure Of Full Length Topoisomerase I From Thermotoga Maritima In Triclinic Crystal Form Length = 633 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query224
1i7d_A 659 DNA topoisomerase III; decatenating enzyme, protei 5e-22
1gku_B 1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 4e-14
1mw9_X 592 DNA topoisomerase I; decatenase enzyme, toprim dom 2e-11
2gai_A 633 DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A 3e-11
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A* 2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A* Length = 659 Back     alignment and structure
 Score = 92.7 bits (231), Expect = 5e-22
 Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 20/225 (8%)

Query: 16  QTPTLGFCVQRYLQITSFKPEKFWTLH-PYLVQNGYELKLEW-----------ERQKLFD 63
           QTP LG  V+R  +I +F  + F+ +    +          W           E  +L  
Sbjct: 199 QTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTPADERFTAIWQPSEACEPYQDEEGRLLH 258

Query: 64  FDVATMFQKLVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAE 123
             +A      +   +   V   ++K+ES+  P   +   L   A+   G   Q  + + +
Sbjct: 259 RPLAEHVVNRI-SGQPAIVTSYNDKRESESAPLPFSLSALQIEAAKRFGLSAQNVLDICQ 317

Query: 124 RLY-TQGFISYPRTESTAYPSSF--DFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTD 180
           +LY T   I++PR++    P          ++A++ +    D + + + +   + R   D
Sbjct: 318 KLYETHKLITFPRSDCRYLPEEHFAGRHAVMNAISVHA--PDLLPQPVVDPDIRNRCWDD 375

Query: 181 A--GDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
                H  I P   ++   L ++  ++Y+ + + +L    PD  +
Sbjct: 376 KKVDAHHAIIPTARSSAINLTENEAKVYNLIARQYLMQFCPDAVF 420
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Length = 1054 Back     alignment and structure
>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X* 1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A* 3pwt_A* 3px7_A* 1ecl_A 1cy9_A* 1cyy_A* Length = 592 Back     alignment and structure
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A* Length = 633 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query224
1i7d_A 659 DNA topoisomerase III; decatenating enzyme, protei 100.0
1mw9_X 592 DNA topoisomerase I; decatenase enzyme, toprim dom 100.0
2gai_A 633 DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A 100.0
4ddu_A 1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 100.0
1gku_B 1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 100.0
1mw9_X592 DNA topoisomerase I; decatenase enzyme, toprim dom 94.29
2gai_A633 DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A 92.14
1i7d_A659 DNA topoisomerase III; decatenating enzyme, protei 91.65
2xvc_A59 ESCRT-III, SSO0910; cell cycle, cell division, cyt 91.03
2vn2_A128 DNAD, chromosome replication initiation protein; D 83.21
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A* 2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A* Back     alignment and structure
Probab=100.00  E-value=3e-63  Score=476.65  Aligned_cols=217  Identities=18%  Similarity=0.324  Sum_probs=185.1

Q ss_pred             ccCCccccCcchhHHHHHHHHHHHHHHcCcCcceEEEEEEE-EecCeEEEEEEe-----------ccccCCHHHHHHHHH
Q 045217            5 VVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYL-VQNGYELKLEWE-----------RQKLFDFDVATMFQK   72 (224)
Q Consensus         5 ~~~~~lS~GRVQTPtL~lIv~Re~eI~~F~p~~y~~i~~~~-~~~~~~~~~~~~-----------~~~~~~~~~a~~~~~   72 (224)
                      +++++||+||||||||+|||+||+||+||+|++||+|.+.+ ..+++.|.+.|.           +++++|++.|+.+.+
T Consensus       188 ~~~~~lS~GRVQTPtL~lIv~Re~eI~~F~p~~yw~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~a~~~~~  267 (659)
T 1i7d_A          188 GYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTPADERFTAIWQPSEACEPYQDEEGRLLHRPLAEHVVN  267 (659)
T ss_dssp             TCCSCCCCCTTHHHHHHHHHHHHHHHHTCCCCEEEEEEEEEECTTCCEEEEEECCCGGGTTTBCTTCCBCCHHHHHHHHH
T ss_pred             CCCCceecCccccchHHHHHHHHHHHHhCCCcceEEEEEEEecCCCcEEEEEEEeccccccccccccccCCHHHHHHHHH
Confidence            45678999999999999999999999999999999999999 555677999993           348999999999999


Q ss_pred             HHccCCceEEEEEeeecccccCCCcccHHHHHHHHHHhCCCCHHHHHHHHHHHhh-ccceeccCCCCcccCCCc--ChHH
Q 045217           73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYT-QGFISYPRTESTAYPSSF--DFRG  149 (224)
Q Consensus        73 ~~~~~~~~~V~~v~~k~~~~~pP~p~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE-~glITYPRTds~~l~~~~--~~~~  149 (224)
                      .|.+ ..++|++|++++++++||+||||++||++||++|||||++||++||+||| +||||||||||++||+++  ++++
T Consensus       268 ~~~~-~~~~V~~v~~k~~~~~pP~pf~ts~LQ~~As~~lg~sa~~Tm~iAQ~LYE~~glITYpRTDS~~ls~~~~~~~~~  346 (659)
T 1i7d_A          268 RISG-QPAIVTSYNDKRESESAPLPFSLSALQIEAAKRFGLSAQNVLDICQKLYETHKLITFPRSDCRYLPEEHFAGRHA  346 (659)
T ss_dssp             HHSS-CEEECCEEEEEEEEECCCCSBCHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSCCBSCSSCCCCCBCGGGGGGHHH
T ss_pred             Hhcc-CCeEEEEEEeEEEEecCCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCeEeccCCCCcccCHHHHHHHHH
Confidence            9987 48999999999999999999999999999999999999999999999999 799999999999999986  6788


Q ss_pred             HHHHHhc-CCchHHHHHHHhhcCCCCCCCCCCCCCCCCcccCCCC-CcCCCCHHHHHHHHHHHHHHHHhcCcCcccC
Q 045217          150 TLSALAN-NPVWGDYVERLLAEGYAKPRSGTDAGDHPPITPMRSA-TEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI  224 (224)
Q Consensus       150 ~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~~k~~aH~AI~PT~~~-~~~~L~~~e~~iY~lI~~r~la~f~~~a~y~  224 (224)
                      ++..+.. .+.|+.++ .+......+..++++++||||||||... +.+ |+++|++||+||||||||+|||||+|+
T Consensus       347 ~i~~~~~~~~~~~~~~-~~~~~~~~r~~~~~kv~aH~AI~PT~~~~~~~-Ls~de~klY~LI~rRflA~~~~~a~~~  421 (659)
T 1i7d_A          347 VMNAISVHAPDLLPQP-VVDPDIRNRCWDDKKVDAHHAIIPTARSSAIN-LTENEAKVYNLIARQYLMQFCPDAVFR  421 (659)
T ss_dssp             HHHHHHHHSTTTCCCT-TCCTTCCCTTBCGGGCCSSCCBCBCSCCSCCC-CCHHHHHHHHHHHHHHHHTTSCCEEEE
T ss_pred             HHHHHhccchhhhhhh-hccccccccccCCCccCCCCCcCCcCCCCccC-CCHHHHHHHHHHHHHHHHHhCchheEE
Confidence            8887753 23332210 0000011233456789999999999985 445 999999999999999999999999984
>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X* 1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A* 3pwt_A* 3px7_A* 1ecl_A 1cy9_A* 1cyy_A* Back     alignment and structure
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A* Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Back     alignment and structure
>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X* 1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A* 3pwt_A* 3px7_A* 1ecl_A 1cy9_A* 1cyy_A* Back     alignment and structure
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A* Back     alignment and structure
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A* 2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A* Back     alignment and structure
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus} Back     alignment and structure
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 224
d1mw9x_ 591 e.10.1.1 (X:) DNA topoisomerase I, 67K N-terminal 1e-23
d1cy9a_260 e.10.1.1 (A:) DNA topoisomerase I, 67K N-terminal 4e-19
d1gkub3 556 e.10.1.1 (B:499-1054) Topoisomerase "domain" of re 4e-11
>d1mw9x_ e.10.1.1 (X:) DNA topoisomerase I, 67K N-terminal domain {Escherichia coli [TaxId: 562]} Length = 591 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Prokaryotic type I DNA topoisomerase
superfamily: Prokaryotic type I DNA topoisomerase
family: Prokaryotic type I DNA topoisomerase
domain: DNA topoisomerase I, 67K N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 96.1 bits (238), Expect = 1e-23
 Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 10/221 (4%)

Query: 10  LIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHP-YLVQNGYELKLEWERQKLFDFDVAT 68
           L  G  Q+  +   V+R  +I +F PE+FW +       +G  L L+   Q    F    
Sbjct: 190 LSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGEALALQVTHQNDKPFRPVN 249

Query: 69  MFQKLVMQDRI----LEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAER 124
             Q       +      V++  +K  +        T  L + AS+ LG+G +  M +A+R
Sbjct: 250 KEQTQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQR 309

Query: 125 LYTQGFISYPRTESTAYPSSF--DFRGTLSALANNPVWGDYVERLLAEGYAKPRSGTDAG 182
           LY  G+I+Y RT+ST          RG +S         +   +  ++  ++        
Sbjct: 310 LYEAGYITYMRTDSTNLSQDAVNMVRGYISDNFGKKYLPESPNQYASKENSQE---AREA 366

Query: 183 DHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKY 223
             P    + + +   +  DA +LY  + + F+       KY
Sbjct: 367 IRPSDVNVMAESLKDMEADAQKLYQLIWRQFVACQMTPAKY 407
>d1cy9a_ e.10.1.1 (A:) DNA topoisomerase I, 67K N-terminal domain {Escherichia coli [TaxId: 562]} Length = 260 Back     information, alignment and structure
>d1gkub3 e.10.1.1 (B:499-1054) Topoisomerase "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 556 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query224
d1i7da_ 620 DNA topoisomerase III {Escherichia coli [TaxId: 56 100.0
d1mw9x_ 591 DNA topoisomerase I, 67K N-terminal domain {Escher 100.0
d1cy9a_260 DNA topoisomerase I, 67K N-terminal domain {Escher 100.0
d1gkub3 556 Topoisomerase "domain" of reverse gyrase {Archaeon 100.0
d1mw9x_591 DNA topoisomerase I, 67K N-terminal domain {Escher 95.72
d1q1ha_88 Transcription factor E/IIe-alpha, N-terminal domai 92.79
d1i7da_620 DNA topoisomerase III {Escherichia coli [TaxId: 56 92.65
d1p6ra_82 Penicillinase repressor BlaI {Bacillus licheniform 85.78
d2isya163 Iron-dependent regulator IdeR {Mycobacterium tuber 85.59
d1jhfa171 LexA repressor, N-terminal DNA-binding domain {Esc 83.19
d2ev0a161 Manganese transport regulator MntR {Bacillus subti 82.0
d1okra_120 Methicillin resistance regulatory protein MecI {St 80.15
>d1i7da_ e.10.1.1 (A:) DNA topoisomerase III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Prokaryotic type I DNA topoisomerase
superfamily: Prokaryotic type I DNA topoisomerase
family: Prokaryotic type I DNA topoisomerase
domain: DNA topoisomerase III
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2e-58  Score=439.64  Aligned_cols=217  Identities=19%  Similarity=0.337  Sum_probs=178.2

Q ss_pred             ccCCccccCcchhHHHHHHHHHHHHHHcCcCcceEEEEEEEEec-CeEEEEEEe-----------ccccCCHHHHHHHHH
Q 045217            5 VVTLILIYGPCQTPTLGFCVQRYLQITSFKPEKFWTLHPYLVQN-GYELKLEWE-----------RQKLFDFDVATMFQK   72 (224)
Q Consensus         5 ~~~~~lS~GRVQTPtL~lIv~Re~eI~~F~p~~y~~i~~~~~~~-~~~~~~~~~-----------~~~~~~~~~a~~~~~   72 (224)
                      +.++++|+||||||||+|||+||+||++|+|++||.|.+.|... +..|.+.|.           ++++++++.|+.+.+
T Consensus       188 ~~~~~lS~GRVQtPtL~lIveRe~eI~~F~p~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  267 (620)
T d1i7da_         188 GYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTPADERFTAIWQPSEACEPYQDEEGRLLHRPLAEHVVN  267 (620)
T ss_dssp             TCCSCCCCCTTHHHHHHHHHHHHHHHHTCCCCEEEEEEEEEECTTCCEEEEEECCCGGGTTTBCTTCCBCCHHHHHHHHH
T ss_pred             CCCccccccccccchhhhHHHHHHHHhhccccceeeeeeEeccccchhhhhhhcccccccccchhhhhHhHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999764 456888774           346789999999999


Q ss_pred             HHccCCceEEEEEeeecccccCCCcccHHHHHHHHHHhCCCCHHHHHHHHHHHhhc-cceeccCCCCcccCCCc--ChHH
Q 045217           73 LVMQDRILEVIDISEKQESKVRPCGLNTVNLLKVASSALGYGPQMAMQLAERLYTQ-GFISYPRTESTAYPSSF--DFRG  149 (224)
Q Consensus        73 ~~~~~~~~~V~~v~~k~~~~~pP~p~~l~~Lq~~a~~~~g~sa~~tl~iaQ~LYE~-glITYPRTds~~l~~~~--~~~~  149 (224)
                      .+.+ ..++|++|++++++.+||+||+|++||++||++|||||++||++||+|||+ ||||||||||++||+++  ....
T Consensus       268 ~~~~-~~~~V~~v~~k~~~~~pP~Pf~ts~LQ~~As~~lg~s~~~tm~iAQ~LYe~~glITYpRTDS~~ls~~~~~~~~~  346 (620)
T d1i7da_         268 RISG-QPAIVTSYNDKRESESAPLPFSLSALQIEAAKRFGLSAQNVLDICQKLYETHKLITFPRSDCRYLPEEHFAGRHA  346 (620)
T ss_dssp             HHSS-CEEECCEEEEEEEEECCCCSBCHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSCCBSCSSCCCCCBCGGGGGGHHH
T ss_pred             Hhcc-CCeEEEEecccceecCCCcccchHHHHHHhhhhcCCcHHHHHHHHHHHHHhcCceecccCccccCcHHHHHHHHH
Confidence            9976 578999999999999999999999999999999999999999999999997 99999999999999875  3445


Q ss_pred             HHHHHhc-CCchHHHHHHHhh-cCCCCCCCCCCCCCCCCcccCCCCCcCCCCHHHHHHHHHHHHHHHHhcCcCcccC
Q 045217          150 TLSALAN-NPVWGDYVERLLA-EGYAKPRSGTDAGDHPPITPMRSATEDMLGKDAWRLYSYVCQHFLGTVSPDCKYI  224 (224)
Q Consensus       150 ~l~~l~~-~~~~~~~~~~~~~-~~~~~~~~~~k~~aH~AI~PT~~~~~~~L~~~e~~iY~lI~~r~la~f~~~a~y~  224 (224)
                      +++.+.. ...+..  ..... ....+..++++++|||||+||.......|+++|++||+|||+||||+||+||+|+
T Consensus       347 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~aH~aI~Pt~~~~~~~l~~~e~klY~LI~~r~las~~~~a~~~  421 (620)
T d1i7da_         347 VMNAISVHAPDLLP--QPVVDPDIRNRCWDDKKVDAHHAIIPTARSSAINLTENEAKVYNLIARQYLMQFCPDAVFR  421 (620)
T ss_dssp             HHHHHHHHSTTTCC--CTTCCTTCCCTTBCGGGCCSSCCBCBCSCCSCCCCCHHHHHHHHHHHHHHHHTTSCCEEEE
T ss_pred             HHHHhhcccccccc--cccccccccccccCCcccCCcccccccchhhccCCCHHHHHHHHHHHHHHHHhhCcchhcc
Confidence            5555432 111100  00000 0111223456789999999998755567899999999999999999999999873
>d1mw9x_ e.10.1.1 (X:) DNA topoisomerase I, 67K N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1cy9a_ e.10.1.1 (A:) DNA topoisomerase I, 67K N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gkub3 e.10.1.1 (B:499-1054) Topoisomerase "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1mw9x_ e.10.1.1 (X:) DNA topoisomerase I, 67K N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1i7da_ e.10.1.1 (A:) DNA topoisomerase III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p6ra_ a.4.5.39 (A:) Penicillinase repressor BlaI {Bacillus licheniformis [TaxId: 1402]} Back     information, alignment and structure
>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein MecI {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure