Citrus Sinensis ID: 045225

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350---
Protein Sequence
DEELREARKSLNINEEYLSALRTKSFAECLSKAQLFVTEPSSPSCRHEKFCEILLEPDQDTIPSILESAVLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFIQLALDTADDDQTEPHDKVKLIVSNLNSLIILTNPFSNPSTNEFKVIHDKYSSVLHNLKSKRKKVARKIKLINYVHKASGICITAVCSLIAIAAVVLAAHALTALLIGPMILSFPTKCFKKKLFNFRFLRSGFLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRREDKFALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKEMVTSSSCVEELR
Secondary Structure (PSIPRED)
cHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHcccccccccccHHHHHHHHcccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHccccccccccHHHHHHHccccHHHHHHHHHHHccccccccccHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHHHHHHHHHHcccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHc
Coil and Loop (DISEMBL)
DEELREARKSLNINEEYLSALRTKSFAECLSKAQlfvtepsspscrhekFCEIllepdqdtipsILESavlskvpeLKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFIQLALdtadddqtephdkVKLIVSNLNSLIiltnpfsnpstnefkVIHDKYSSVLHNLKSKRKKVARKIKLINYVHKASGICITAVCSLIAIAAVVLAAHALTALLigpmilsfptkcfKKKLFNFRFLRSGFLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRREDKFALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKEMVTSSSCVEELR
Flexible Loop (DISEMBL)
DEELREARKSLNINEEYLSALRTKSFAECLSKAQLfvtepsspscRHEKFCEILLEPDQDTIPSILESAVLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFIQLALDTADDDQTEPHDKVKLIVSNLNSLIILTNPFSNPSTNEFKVIHDKYSSVLHNLKSKRKKVARKIKLINYVHKASGICITAVCSLIAIAAVVLAAHALTALLIGPMILSFPTKCFKKKLFNFRFLRSGFLrkvrkqldvaakgtyilnrdfDTMGRLVARLHDEVEHNKVMIQFCLDRREDKFALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKEMvtssscveelr
Low Complexity Region (SEG)
DEELREARKSLNINEEYLSALRTKSFAECLSKAQLFVTEPSSPSCRHEKFCEILLEPDQDTIPSILESAVLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFIQLALDTADDDQTEPHDKVKlivsnlnsliilTNPFSNPSTNEFKVIHDKYSSVLHNlkskrkkvarkikliNYVHKASGICITavcsliaiaavvlaahaltalliGPMILSFPTkcfkkklfnfrflrSGFLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRREDKFALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKEMVTSSSCVEELR
Disordered region (IsUnstruct)
***************EYLSALRTKSFAECLSKAQLFVTE*****CRHEKFCEILLEPDQDTIPSILESAVLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFIQLALDTAD******HDKVKLIVSNLNSLIILTNPFSNPSTNEFKVIHDKYSSVLHNLKSKRKKVARKIKLINYVHKASGICITAVCSLIAIAAVVLAAHALTALLIGPMILSFPTKCFKKKLFNFRFLRSGFLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRREDKFALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIK*************
Disordered Region (DISOPRED)
****************YLSALRTKSFAECLS*********************ILLEPDQDTIPSILESAVLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFIQLALDTADDDQTEPHDKVKLIVSNLNSLIILTNPFSNPSTNEFKVIHD***********************NYVHKASGICITAVCSLIAIAAVVLAAHALTALLIGPMILSFPTKCFKKKLFNFRFL**********QLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRREDKFALHVMKEIKK*HVGFQKQVEELEEHVYLCLVTINRARSQVIKE************
Disordered Region (DISEMBL)
DEELREARKSLNINEEYLSALRTKSFAECLSKAQLFV********RHEKFCEILLEPDQDTIPSILESAVLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFIQLALDTADDDQTEPHDKVKLIVSNLNSLIILTNPFSNPSTNEFKVIHDKYSSVLHNLKSKRKKVARKIKLINYVHKASGICITAVCSLIAIAAVVLAAHALTALLIGPMILSFPTKCFKKKLFNFRFLRSGFLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRREDKFALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKE************
Disordered Region (DISPRO)
*****EARKSLNINEEYLSALRTKSFAECLSKAQLFVTEPSSPSCRHEKFCEILLEPDQDTIPSILESAVLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFIQLALDTADDDQTEPHDKVKLIVSNLNSLIILTNPFSNPSTNEFKVIHDKYSSVLHNLKSKRKKVARKIKLINYVHKASGICITAVCSLIAIAAVVLAAHALTALLIGPMILSFPTKCFKKKLFNFRFLRSGFLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRREDKFALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKEMVTSS*******
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
DEELREARKSLNINEEYLSALRTKSFAECLSKAQLFVTEPSSPSCRHEKFCEILLEPDQDTIPSILESAVLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFIQLALDTADDDQTEPHDKVKLIVSNLNSLIILTNPFSNPSTNEFKVIHDKYSSVLHNLKSKRKKVARKIKLINYVHKASGICITAVCSLIAIAAVVLAAHALTALLIGPMILSFPTKCFKKKLFNFRFLRSGFLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRREDKFALHVxxxxxxxxxxxxxxxxxxxxxVYLCLVTINRARSQVIKEMVTSSSCVEELR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	353	2.2.26 [Sep-21-2011]
A2XCJ1	378	UPF0496 protein 3 OS=Oryz	N/A	no	0.932	0.870	0.292	1e-37
Q10RR9	378	UPF0496 protein 3 OS=Oryz	yes	no	0.932	0.870	0.290	1e-36
Q6DYE5	390	UPF0496 protein At1g20180	yes	no	0.954	0.864	0.300	9e-36
Q9SMU4	416	UPF0496 protein At3g49070	no	no	0.881	0.747	0.320	5e-35
Q9LT84	382	UPF0496 protein At3g19330	no	no	0.881	0.814	0.274	2e-28
Q9LJK4	360	UPF0496 protein At3g19250	no	no	0.895	0.877	0.271	6e-28
A2YH25	408	Putative UPF0496 protein	N/A	no	0.300	0.259	0.380	6e-14
Q5Z8N6	408	Putative UPF0496 protein	no	no	0.300	0.259	0.380	6e-14
Q10QE9	388	UPF0496 protein 1 OS=Oryz	no	no	0.821	0.747	0.239	9e-10
A2XDK8	388	UPF0496 protein 1 OS=Oryz	N/A	no	0.821	0.747	0.239	9e-10

>sp|A2XCJ1|U496C_ORYSI UPF0496 protein 3 OS=Oryza sativa subsp. indica GN=OsI_009784 PE=3 SV=2

 Score =  157 bits (397), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/379 (29%), Positives = 181/379 (47%), Gaps = 50/379 (13%)

Query: 1   DEELREARK------SLNINEEYLSALRTKSFAECLSK---------AQLFVTEPSSPSC 45
           D+++ E +K      S +  EEY SA RT+S+ +  ++         A L         C
Sbjct: 16  DQQVHEPKKVVAPSSSFDFREEYTSAFRTESYNDFWARVLDITLAHGAALVPRHGGGGGC 75

Query: 46  RHEK-------FCEILLEPDQDTIPSILESAVLSKV-PELKDLLLNYFDISAEASSICGQ 97
              K       F E LLEPDQ  + + L S   S++ P+++ LL  Y+  +A AS +C  
Sbjct: 76  AASKRLPSYRLFAEHLLEPDQRAVAAALASPRGSRLRPDVRGLLAAYYAETANASFLCSH 135

Query: 98  LLKNINDVRYEYRFIQLALDTADDDQTEPHDKVKLIVSNLNSL-IILTNPFSN--PSTNE 154
           LLK+I  +R  YR ++  L     D         + VS L  +   L  PF+    S   
Sbjct: 136 LLKDIEHIRLRYRPLKHTLRKLASD---------VGVSGLADVSAALGQPFTALAASQGR 186

Query: 155 FKVIHDKYSSVLHNLKSKRKKVARKIKLINYVHKASGICITAVCSLIAIAAVVLAAHALT 214
            + +      +L  L + RKK   +I+ +  + +A  +      +++A+    +  H L 
Sbjct: 187 LREVQAGSGDLLRGLDAGRKKARHRIRSVARLRRALSVSFVTAVAVVAVVGACIGVHILA 246

Query: 215 ALLIGPMILSFPTKCFKKKLFNFRFLRSGFLRKVRKQLDVAAKGTYILNRDFDTMGRLVA 274
           A    PM+               RF      R+   QL+ AAKGTYILNRD +T+ RLVA
Sbjct: 247 AFAAFPMM--------SPAWLGERFFSGRAARRALVQLEAAAKGTYILNRDMETISRLVA 298

Query: 275 RLHDEVEHNKVMIQFCLDRR-------EDKFALHVMKEIKKNHVGFQKQVEELEEHVYLC 327
           R+ DE EH   +++ C++ R       + +    V++++ KN   F++Q++ELEEH++LC
Sbjct: 299 RVRDEGEHMVALLRLCVEHRPAAGAGGKGRLVQEVLRQLSKNEESFRQQLDELEEHLFLC 358

Query: 328 LVTINRARSQVIKEMVTSS 346
            +TIN+AR  V+  M  ++
Sbjct: 359 FMTINKARIMVMNFMAAAA 377

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q10RR9|U496C_ORYSJ UPF0496 protein 3 OS=Oryza sativa subsp. japonica GN=Os03g0148000 PE=2 SV=1

 Score =  154 bits (388), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 179/379 (47%), Gaps = 50/379 (13%)

Query: 1   DEELREARK------SLNINEEYLSALRTKSFAECLSK---------AQLFVTEPSSPSC 45
           D+++ E +K      S +  EEY SA RT+S+ +  ++         A L         C
Sbjct: 16  DQQVHEPKKVVAPSSSFDFREEYTSAFRTESYNDFWARVLDITLAHGAALVPRHGGGGGC 75

Query: 46  RHEK-------FCEILLEPDQDTIPSILESAVLSKV-PELKDLLLNYFDISAEASSICGQ 97
              K       F E LLEPDQ  + + L S   S++ P+++ LL  Y+  +A AS +C  
Sbjct: 76  AASKRLPSYRLFAEHLLEPDQRAVAAALASPRGSRLRPDVRGLLAAYYAETANASFLCSH 135

Query: 98  LLKNINDVRYEYRFIQLALDTADDDQTEPHDKVKLIVSNLNSL-IILTNPFSN--PSTNE 154
           LLK+I  +R  YR ++  L     D         + VS L  +   L  PF+    S   
Sbjct: 136 LLKDIEHIRLRYRPLKHTLRKLASD---------VGVSGLADVSAALGQPFTALAASQGR 186

Query: 155 FKVIHDKYSSVLHNLKSKRKKVARKIKLINYVHKASGICITAVCSLIAIAAVVLAAHALT 214
            + +      +L  L + RKK   +I+ +  + +A  +      +++A+    +  H L 
Sbjct: 187 LREVQAGSGDLLRGLDAGRKKARHRIRSVARLRRALSVSFVTAVAVVAVVGACIGVHILA 246

Query: 215 ALLIGPMILSFPTKCFKKKLFNFRFLRSGFLRKVRKQLDVAAKGTYILNRDFDTMGRLVA 274
           A    PM+               RF      R+   QL+ AAKGTYILNRD +T+ RLVA
Sbjct: 247 AFAAFPMM--------SPAWLGERFFSGRAARRALVQLEAAAKGTYILNRDMETISRLVA 298

Query: 275 RLHDEVEHNKVMIQFCLDRR-------EDKFALHVMKEIKKNHVGFQKQVEELEEHVYLC 327
           R+ DE EH   + + C++ R       + +    V++++ KN   F++Q++ELEEH++LC
Sbjct: 299 RVRDEGEHMVALRRLCVEHRPAAGAGGKGRLVQEVLRQLSKNEESFRQQLDELEEHLFLC 358

Query: 328 LVTINRARSQVIKEMVTSS 346
            +T N+AR  V+  M  ++
Sbjct: 359 FMTTNKARIMVMNFMAAAA 377

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6DYE5|U496K_ARATH UPF0496 protein At1g20180 OS=Arabidopsis thaliana GN=At1g20180 PE=2 SV=2

 Score =  151 bits (381), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 111/369 (30%), Positives = 184/369 (49%), Gaps = 32/369 (8%)

Query: 5   REARKSLNINEEYLSALRTKSFAECLSKA--QLFVTEPSSPSCRHEK------------F 50
           R     L++NEEY  A RT S+ E  +KA  QL +T  S  S                 F
Sbjct: 28  RSLTSKLSVNEEYKEAFRTNSYLETRTKAEDQLGITSCSKLSSSSPSPSSSSDLSFHSHF 87

Query: 51  CEILLEPDQDTIPSILESAVLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYR 110
            + LL+P Q+T+ ++++ +       L +L++ +FD+S+EA  +C  LL+ +  ++  + 
Sbjct: 88  TDYLLDPPQETLDALMQDS------SLDNLIVTFFDLSSEACDVCETLLQCLQQIKINHN 141

Query: 111 FIQLAL-------DTADDDQTEPHDKVKLIVSNLNSLIILTNPFSN-PSTNEFKVIHDKY 162
            I+  +       + A   +  P     LI   L+    L NP     +  +F+++HD  
Sbjct: 142 KIKRVMKIGKRVCNGAKTLECSPEMLCALIFQELSRFAALKNPLCRIVNEAQFRIVHDAN 201

Query: 163 SSVLHNLKSKRKKVARKIKLINYVHKASGICITAVCSLIAIAAVVLAAHALTALLIGPMI 222
           S +L  L SK++++ RKI+   +  K  G  +    S I I  +++A H++  +   P +
Sbjct: 202 SDLLTKLTSKKRRIRRKIRFFKFCKKLGGYSLVITHSAIVITLLIIALHSILGVFAAPAL 261

Query: 223 LSFPTKCF-KKKLFNFRFLRSG---FLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHD 278
           L   + C  +KK    R  +S     L K+  Q+D+AAKG +IL  D DT+ RL  RL D
Sbjct: 262 LGLCSFCLLRKKKAKGRMHKSNKDTTLEKLGTQIDIAAKGMFILINDLDTLSRLAGRLCD 321

Query: 279 EVEHNKVMIQFCLDRREDKFALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQV 338
           E+EH K +   C   R+ +     ++E   +   F  Q++ELEEH+YLC  TINR+R  V
Sbjct: 322 EIEHRKTVAAMCAKSRKIEVLKEALREFNGHEEKFSDQLQELEEHLYLCFHTINRSRRLV 381

Query: 339 IKEMVTSSS 347
           + ++   SS
Sbjct: 382 LAQITGQSS 390

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMU4|U496N_ARATH UPF0496 protein At3g49070 OS=Arabidopsis thaliana GN=At3g49070 PE=2 SV=1

 Score =  148 bits (374), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 114/356 (32%), Positives = 185/356 (51%), Gaps = 45/356 (12%)

Query: 11  LNINEEYLSALRTKSFAECLSKA-QLFVTEPSSPS----------------CRHEKFCEI 53
           +++ EEY +A RT+S+    ++  QL   + +  S                  +  F   
Sbjct: 69  VDVREEYANAFRTESYNHFWTRVVQLSRKKSAVSSSSSSPPIESSSTSARLMSYRLFAHN 128

Query: 54  LLEPDQDTIPSILESAVLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFIQ 113
           LL+PD +TI  IL+ + + +    + LL +YF  +A A  +C QLLKNI+ +R +Y  ++
Sbjct: 129 LLDPDLNTITRILDVSRVGR--HTRTLLSDYFLETANAFLLCTQLLKNIHHLRSKYESLK 186

Query: 114 LALDTADDDQTEPHDKVKLIVSNLNSLIILTNPFSNPSTNEFKVIHDKYSSVLHNLKSKR 173
                     +E H+ + LI      +    +PF + S +  ++I      +L  L+S+R
Sbjct: 187 PKF------HSENHNSLALI-DQFTEISKWFDPFIS-SGSRIQLIRSGCLYLLKRLESRR 238

Query: 174 KKVARKIKLINYVHKASGICITAVCSLIAIAAVVLAAHALTALLIGPMILS--FPTKCFK 231
            K   K+KLIN +  +SG     V +L     V +A+HA    L  P +L+  F     +
Sbjct: 239 DKTRAKLKLINGLTHSSG---LLVLALTTTLIVTIASHAFALFLAAPTLLASQFKPAGLR 295

Query: 232 KKLFNFRFLRSGFLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCL 291
            KL            K   +LDVAAKGTYIL+RD DT+ RLV R++DEV H + M +F +
Sbjct: 296 NKL-----------TKTAARLDVAAKGTYILSRDLDTISRLVTRINDEVNHVRAMAEFWV 344

Query: 292 DRREDKF--ALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKEMVTS 345
            R   +   +  V +E+K+    F ++++ELEEH+YLC +TINRAR+ ++KE++ S
Sbjct: 345 GRGSGRVRGSEEVARELKRCEESFSEELDELEEHIYLCFMTINRARNLLVKEILDS 400

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LT84|U496M_ARATH UPF0496 protein At3g19330 OS=Arabidopsis thaliana GN=At3g19330 PE=2 SV=2

 Score =  127 bits (318), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 179/357 (50%), Gaps = 46/357 (12%)

Query: 7   ARKSLNINEEYLSALRTKSFAECLSKAQLFV---------TEPSSPSCRHEKFCEILLEP 57
           +  + N++ E   A +T S+ +  S+  + V          +P       E     +L+P
Sbjct: 41  SSPTFNLSRELAHAFQTPSYHDVRSRVHVVVDLTQIHHRLIQPDI-----ELLLSQVLQP 95

Query: 58  DQDTIPSILESAVLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFIQLALD 117
           +++ +   +      K   L +L+  YF  S +A+ +C  L +N++  R+      L   
Sbjct: 96  NKECVQEAIRHV---KQTTLTNLVSTYFQHSEDATRLCLNLYQNVHSARH-----HLYTP 147

Query: 118 TADDDQTEPHDKVKLIVSNLNSLII--------LTNPFSNPSTNEFKVIHDKYSSVLHNL 169
             D     P D +  I  +L  L            NPFS+P +  F+     +S + HNL
Sbjct: 148 LLDLFNIFPGDSLPAIDESLCDLAFDVFLKLDTFENPFSSPESYSFRDTQLCFSQLKHNL 207

Query: 170 KSKRKKVARKIKLINYVHKASGICITAVCSLIAIAAVVLAAHALTALLI--GPMILSFPT 227
             + +K   +++LI++    S +C+ A    +A +AVV+A+HAL  LL+  GP+   +  
Sbjct: 208 DRRLRKSRSRVRLIHHATAGSSLCLVAAVVAVAASAVVIASHALPILLVVAGPLCSPYLP 267

Query: 228 KCFKKK-LFNFRFLRSGFLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVM 286
             FK+K L N              QL+ A+KGT++LN+D DT+ RLV+RLH  +E++K +
Sbjct: 268 HSFKRKELTNI------------CQLNAASKGTFVLNKDLDTIDRLVSRLHTGIEYDKFL 315

Query: 287 IQFCLDRREDKFALH-VMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKEM 342
           I+  L+R  D  ++  ++K ++K+H+    Q+++LE+H+ L    +N+ARS ++ E+
Sbjct: 316 IRLGLERGRDVHSIQEILKLLRKSHLPLTHQLKDLEDHICLWFTNVNKARSLLLTEI 372

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJK4|U496L_ARATH UPF0496 protein At3g19250 OS=Arabidopsis thaliana GN=At3g19250 PE=2 SV=1

 Score =  125 bits (313), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 177/342 (51%), Gaps = 26/342 (7%)

Query: 10  SLNINEEYLSALRTKSFAECLSKAQLFVTEPSSPSCRHEKFCEILLEPDQDTIPSILESA 69
           + N++ E   A +T S+ +   +++L V +P+  +   E F    L P+ +++   L S 
Sbjct: 33  TFNLSHELAHAFQTPSYHDI--RSRLLVIDPTQENL--ELFLSQELRPNNESVQEAL-SL 87

Query: 70  VLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFIQLALDTADDDQTEPHDK 129
             +K   L +L+  YF  S +A+  C  L +N++  R         LD  +    + H  
Sbjct: 88  RHAKQTTLTNLVSTYFQHSEDATRFCLNLYQNVHSARCH--LYTPLLDLFNIFPRDSHSA 145

Query: 130 VKLIVSNLNSLIILT-----NPFSNPSTNEFKVIHDKYSSVLHNLKSKRKKVARKIKLIN 184
           +     NL   + L      NPF++P ++ F+     +  +   L ++ +K   +++L++
Sbjct: 146 IDESFCNLAFDVFLKLDTFENPFASPESHSFQDTQLCFYQLADKLDTRIRKSKSRVRLLH 205

Query: 185 YVHKASGICITAVCSLIAIAAVVLAAHALTALLI--GPMILSFPTKCFKKKLFNFRFLRS 242
           +    S +C+     ++A +A  +A HAL  +L+  GP+   +    FKKK  +  F   
Sbjct: 206 HATAGSALCLVTAVVVVAASAAFIAYHALPTILVVAGPLCTPYLPHSFKKKELSNIF--- 262

Query: 243 GFLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRREDKFAL-H 301
                   QL+VAAKGT+ LN+D DT+ RLV+RLH  V+++K++I+  L+R  D + +  
Sbjct: 263 --------QLNVAAKGTFALNKDLDTIDRLVSRLHTGVKNDKLLIRLGLERGRDVYTIPE 314

Query: 302 VMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKEMV 343
            +K+++K+HV    Q+E L +H+      +N++RS ++KE++
Sbjct: 315 FVKQLRKSHVNHTHQLEVLVDHICRWFTNVNKSRSLLLKEIL 356

Arabidopsis thaliana (taxid: 3702)

>sp|A2YH25|U496B_ORYSI Putative UPF0496 protein 2 OS=Oryza sativa subsp. indica GN=OsI_023618 PE=3 SV=2

 Score = 79.0 bits (193), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 7/113 (6%)

Query: 232 KKLFNFRFLRSGFLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCL 291
           +K+ +  + R+G        LD AA+G YI+ RD DT+ R+V R HDE+EH + + +  +
Sbjct: 280 EKVSSRHYARAG------ATLDAAARGAYIVGRDLDTVSRMVRRAHDELEHGRDVARIAM 333

Query: 292 DRREDKFALH-VMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKEMV 343
               ++  L  V +E ++     + Q+ ELEEHV LCL+TINR R  V  EM 
Sbjct: 334 RGHGERPLLQEVAREEEECEEDLRAQLAELEEHVCLCLITINRTRRLVAHEMA 386

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q5Z8N6|U496B_ORYSJ Putative UPF0496 protein 2 OS=Oryza sativa subsp. japonica GN=Os06g0718300 PE=3 SV=1

 Score = 79.0 bits (193), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 7/113 (6%)

Query: 232 KKLFNFRFLRSGFLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCL 291
           +K+ +  + R+G        LD AA+G YI+ RD DT+ R+V R HDE+EH + + +  +
Sbjct: 280 EKVSSRHYARAG------ATLDAAARGAYIVGRDLDTVSRMVRRAHDELEHGRDVARIAM 333

Query: 292 DRREDKFALH-VMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKEMV 343
               ++  L  V +E ++     + Q+ ELEEHV LCL+TINR R  V  EM 
Sbjct: 334 RGHGERPLLQEVAREEEECEEDLRAQLAELEEHVCLCLITINRTRRLVAHEMA 386

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q10QE9|U496A_ORYSJ UPF0496 protein 1 OS=Oryza sativa subsp. japonica GN=Os03g0199100 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 136/309 (44%), Gaps = 19/309 (6%)

Query: 54  LLEPDQDTIPSILE-SAVLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFI 112
           LL+ +Q+ +  IL+    + K PEL DL+ +YF+ S      C  L K +   R     +
Sbjct: 84  LLDMNQEVVRVILDCKKDIWKSPELFDLVEDYFESSLHTLDFCTALDKCLKRARDSQLLL 143

Query: 113 QLALDTADDDQ-----------TEPHDKVKLIVSNLNSLIILTNPFSNPSTNEFKVIHDK 161
            +AL   DD++             P  +    +  L       +PF+    + F+ ++ +
Sbjct: 144 HVALQRFDDEEDNDAAAAGQEDAAPSARYARTLHELRQFKAAGDPFTEEFFSAFQAVYRQ 203

Query: 162 YSSVLHNLKSKRKKVARKIKLINYVHKASGICITAVCSLIAIAAVVLAAHALTALLIGPM 221
             ++L  L+ ++ ++ +K++ I    + S I      + + I +VV AA A   +     
Sbjct: 204 QLTMLEKLQQRKHRLDKKVRAIKAWRRVSSIIFATTFAAVLICSVVAAAIAAPPVAAALA 263

Query: 222 ILSFPTKCFKKKLFNFRFLRSGFLRKVRKQLDVAAK---GTYILNRDFDTMGRLVARLHD 278
             +        K  +   L  G+   +R Q +V +    GT+I  +D D++  L+ R+  
Sbjct: 264 AAASIPVGSMGKWIDS--LLKGYQDALRGQKEVVSAMQVGTFIAIKDLDSIRVLINRVEL 321

Query: 279 EVEHNKVMIQFCLDRREDKFALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQV 338
           E+      ++F  +R E+     V +EIKK    F K VE+L E    C   I RAR+ V
Sbjct: 322 EISSMIDCVEFA-ERDEEAVKFGV-EEIKKKLEVFMKSVEDLGEQADRCSRDIRRARTVV 379

Query: 339 IKEMVTSSS 347
           ++ ++   S
Sbjct: 380 LQRIIRHPS 388

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2XDK8|U496A_ORYSI UPF0496 protein 1 OS=Oryza sativa subsp. indica GN=OsI_010151 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 136/309 (44%), Gaps = 19/309 (6%)

Query: 54  LLEPDQDTIPSILE-SAVLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFI 112
           LL+ +Q+ +  IL+    + K PEL DL+ +YF+ S      C  L K +   R     +
Sbjct: 84  LLDMNQEVVRVILDCKKDIWKSPELFDLVEDYFESSLHTLDFCTALDKCLKRARDSQLLL 143

Query: 113 QLALDTADDDQ-----------TEPHDKVKLIVSNLNSLIILTNPFSNPSTNEFKVIHDK 161
            +AL   DD++             P  +    +  L       +PF+    + F+ ++ +
Sbjct: 144 HVALQRFDDEEDNDAAAAGQEDAAPSARYARTLHELRQFKAAGDPFTEEFFSAFQAVYRQ 203

Query: 162 YSSVLHNLKSKRKKVARKIKLINYVHKASGICITAVCSLIAIAAVVLAAHALTALLIGPM 221
             ++L  L+ ++ ++ +K++ I    + S I      + + I +VV AA A   +     
Sbjct: 204 QLTMLEKLQQRKHRLDKKVRAIKAWRRVSSIIFATTFAAVLICSVVAAAIAAPPVAAALA 263

Query: 222 ILSFPTKCFKKKLFNFRFLRSGFLRKVRKQLDVAAK---GTYILNRDFDTMGRLVARLHD 278
             +        K  +   L  G+   +R Q +V +    GT+I  +D D++  L+ R+  
Sbjct: 264 AAASIPVGSMGKWIDS--LLKGYQDALRGQKEVVSAMQVGTFIAIKDLDSIRVLINRVEL 321

Query: 279 EVEHNKVMIQFCLDRREDKFALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQV 338
           E+      ++F  +R E+     V +EIKK    F K VE+L E    C   I RAR+ V
Sbjct: 322 EISSMIDCVEFA-ERDEEAVKFGV-EEIKKKLEVFMKSVEDLGEQADRCSRDIRRARTVV 379

Query: 339 IKEMVTSSS 347
           ++ ++   S
Sbjct: 380 LQRIIRHPS 388

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	353
224066651	361	predicted protein [Populus trichocarpa]	0.971	0.950	0.670	1e-128
255566616	407	conserved hypothetical protein [Ricinus	0.974	0.845	0.668	1e-127
147772849	453	hypothetical protein VITISV_028178 [Viti	0.838	0.653	0.594	1e-102
449446504	347	PREDICTED: UPF0496 protein 3-like [Cucum	0.866	0.881	0.397	3e-52
449533160	347	PREDICTED: UPF0496 protein 3-like [Cucum	0.866	0.881	0.397	3e-52
224082460	135	predicted protein [Populus trichocarpa]	0.365	0.955	0.767	8e-52
357123672	331	PREDICTED: UPF0496 protein At3g19330-lik	0.881	0.939	0.352	6e-47
255545218	370	conserved hypothetical protein [Ricinus	0.903	0.862	0.362	3e-46
224083134	393	predicted protein [Populus trichocarpa]	0.932	0.837	0.351	2e-45
357443879	366	hypothetical protein MTR_1g100200 [Medic	0.889	0.857	0.367	7e-45

>gi|224066651|ref|XP_002302174.1| predicted protein [Populus trichocarpa] gi|222843900|gb|EEE81447.1| predicted protein [Populus trichocarpa]

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 232/346 (67%), Positives = 282/346 (81%), Gaps = 3/346 (0%)

Query: 2   EELREARKSLNINEEYLSALRTKSFAECLSKAQLFVTEPSSPSCRHEKFCEILLEPDQDT 61
           +E  +A KSLN+NEEYLSALRT+SFA+  +KAQ  V  PS P+  H KF EILLEP Q++
Sbjct: 15  KEFSDACKSLNVNEEYLSALRTQSFADFFTKAQSLVNGPSFPTHCHRKFSEILLEPGQES 74

Query: 62  IPSILESAVLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFIQLALDTADD 121
           IP ILESA+LSKVPELK L+LNYFD+SAEAS+IC  LLKNIN ++  Y FIQ  L++ DD
Sbjct: 75  IPVILESALLSKVPELKGLMLNYFDVSAEASNICSHLLKNINQIQSSYVFIQRVLNSIDD 134

Query: 122 DQTEPHDKVKLIVSNLNSLIILTNPFSNPSTNEFKVIHDKYSSVLHNLKSKRKKVARKIK 181
              E   KVKLIVS LNS II +NPFS P+ ++FK+I+D+Y  VL+ LKSKR KVARK+K
Sbjct: 135 CSPE---KVKLIVSELNSFIIQSNPFSTPNKHDFKLINDRYLLVLNRLKSKRNKVARKMK 191

Query: 182 LINYVHKASGICITAVCSLIAIAAVVLAAHALTALLIGPMILSFPTKCFKKKLFNFRFLR 241
           LI  +HKA+GICI A CSLIAI  +VLAAH LTAL++GP I S P K FKK+L +F+FLR
Sbjct: 192 LIACIHKATGICIAAACSLIAITTIVLAAHTLTALVMGPAIFSLPIKHFKKQLTSFKFLR 251

Query: 242 SGFLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRREDKFALH 301
           SGFLRKV +QLDVAAKGTYILNRDFDT+  LV+RLHDEVEH+K MIQFCL+R EDKF+L 
Sbjct: 252 SGFLRKVGQQLDVAAKGTYILNRDFDTISSLVSRLHDEVEHDKAMIQFCLERIEDKFSLQ 311

Query: 302 VMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKEMVTSSS 347
           V+KE+KK+ +GF+KQVEELEEH+YLCL+TINRAR+ VI+E+  SSS
Sbjct: 312 VIKELKKSDIGFRKQVEELEEHLYLCLLTINRARALVIEEITASSS 357

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566616|ref|XP_002524292.1| conserved hypothetical protein [Ricinus communis] gi|223536383|gb|EEF38032.1| conserved hypothetical protein [Ricinus communis]

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/347 (66%), Positives = 281/347 (80%), Gaps = 3/347 (0%)

Query: 2   EELREARKSLNINEEYLSALRTKSFAECLSKAQLFVTEPSSPSCRHEKFCEILLEPDQDT 61
           E +R+ R+SLN+NEEY+SALRT+S+ +  +KAQ  V E   PS  H KF E+LLEP Q+ 
Sbjct: 16  ELIRDGRESLNVNEEYVSALRTQSYVDFFTKAQTLVNESPFPSLCHHKFSEVLLEPGQEA 75

Query: 62  IPSILESAVLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFIQLALDTADD 121
           IP+ILESA  SK+PELK L+L YF++SAEAS IC  LLKNIN ++  Y FI+ A+D+  D
Sbjct: 76  IPAILESATFSKIPELKALMLKYFELSAEASKICSHLLKNINQIQSNYEFIRGAIDSTID 135

Query: 122 DQTEPHDKVKLIVSNLNSLIILTNPFSNPSTNEFKVIHDKYSSVLHNLKSKRKKVARKIK 181
           D +   +KVKLIVS LNS II  NPFS P  N+FK+I+DKYSSVLH+LKSKRKKV RKI+
Sbjct: 136 DYSP--EKVKLIVSKLNSFIIQRNPFSTPDKNDFKLINDKYSSVLHHLKSKRKKVGRKIR 193

Query: 182 LINYVHKASGICITAVCSLIAIAAVVLAAHALTALLIGPMILSFPTKCFKKKLFNFRFLR 241
           LI  ++KASG+CITA C LIAI+A+V+AAH LTAL++GP I SFP K FKKKL + RF+R
Sbjct: 194 LITCINKASGVCITAACGLIAISAIVIAAHTLTALVMGPAIFSFPVKGFKKKLMSLRFMR 253

Query: 242 SGFLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRRE-DKFAL 300
           SG LR++ +QLDVAAKGTYILNRDFDTM RLVARLHDEVEHNK MIQFCL+RRE DKF+L
Sbjct: 254 SGILRQIGQQLDVAAKGTYILNRDFDTMSRLVARLHDEVEHNKAMIQFCLERREDDKFSL 313

Query: 301 HVMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKEMVTSSS 347
            VMKE+KK+  GF+KQVEELEEHVYLCL+TINRAR+ V+KEM  S S
Sbjct: 314 QVMKELKKSDTGFRKQVEELEEHVYLCLLTINRARALVVKEMTDSKS 360

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772849|emb|CAN76069.1| hypothetical protein VITISV_028178 [Vitis vinifera]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/348 (59%), Positives = 246/348 (70%), Gaps = 52/348 (14%)

Query: 6   EARKSLNINEEYLSALRTKSFAECLSKAQLFVTEPSSPS--CRHEKFCEILLEPDQDTIP 63
           +AR+SLN+NEEYL ALRTKS+A+  +KAQL V +PSSPS  C H KF E+LLEP QDTI 
Sbjct: 151 KARRSLNVNEEYLCALRTKSYADFFTKAQLLVKQPSSPSNYC-HVKFSEVLLEPGQDTIA 209

Query: 64  SILESAVLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFIQLALDTADDDQ 123
            ILESA+LSK PELK L+LNYFD+SAEAS IC  LLK+I+ +   Y+FIQ  LDT D+  
Sbjct: 210 DILESAILSKKPELKGLILNYFDMSAEASKICSHLLKSISQLLANYQFIQRVLDTTDNYS 269

Query: 124 TEPHDKVKLIVSNLNSLIILTNPFSNPSTNEFKVIHDKYSSVLHNLKSKRKKVARKIKLI 183
               D  + ++S LNS IIL NPFS+ S ++FK I DKYSSVLH+LKSKRK VARKIKLI
Sbjct: 270 P---DGFESMMSQLNSFIILNNPFSSLSKHDFKQIRDKYSSVLHHLKSKRKSVARKIKLI 326

Query: 184 NYVHKASGICITAVCSLIAIAAVVLAAHALTALLIGPMILSFPTKCFKKKLFNFRFLRSG 243
            Y  KASG+ +T    L+A+ A+                                     
Sbjct: 327 KYFKKASGVFVTVGFGLVAVTAM------------------------------------- 349

Query: 244 FLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRREDKFALH-V 302
                  QLDVAAKGTYILNRDFDTM RLVARLHDEVEHNK MIQFCL+RRED+F+L  V
Sbjct: 350 -------QLDVAAKGTYILNRDFDTMSRLVARLHDEVEHNKAMIQFCLERREDRFSLQEV 402

Query: 303 MKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKEMVTSSSCVE 350
           +KE+KK+ +GF+KQVEELEEHVYLCLVTINRAR+ VIKEM+T +SCVE
Sbjct: 403 VKELKKSDIGFRKQVEELEEHVYLCLVTINRARALVIKEMIT-ASCVE 449

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446504|ref|XP_004141011.1| PREDICTED: UPF0496 protein 3-like [Cucumis sativus]

 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 136/342 (39%), Positives = 202/342 (59%), Gaps = 36/342 (10%)

Query: 8   RKSLNINEEYLSALRTKSFAECLSKAQLFVTEPSSPSCRHE------KFCE-ILLEPDQ- 59
           +KS N+++EYL  LRT+SFAE       F+   S PS          +F E ILL+P Q 
Sbjct: 31  KKSFNVDDEYLCTLRTQSFAE------FFINPESPPSSASTAVDCCWRFSETILLQPGQL 84

Query: 60  DTIPSILESAVLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFIQLALDTA 119
           +  PSILES+ +  +PELK L  +YF++SA+AS++C +LL N    R   R IQ +LD+ 
Sbjct: 85  EPAPSILESSFILMLPELKGLFTDYFNLSAKASNLCTRLLSNFKLTRSTSRCIQESLDSI 144

Query: 120 DDDQTEPHDKVKLIVSNLNSLIILTNPFSNPSTNEFKVIHDKYSSVLHNLKSKRKKVARK 179
           +  +    + V+ I SN+   + L  PFS+    +F +IHD Y+++ H L   RKKVARK
Sbjct: 145 E--KCFSSETVESIASNV---LALRPPFSDLEKRDFALIHDDYTAISHRLNCTRKKVARK 199

Query: 180 IKLINYVHKASGICITAVCSLIAIAAVVLAAHALTALLIGPMILSFPTKCFKKKLFNFRF 239
           ++ +  +    GI     C L AI    L    + A   GP +       F +KL     
Sbjct: 200 MRWMKIID---GI----TCGLNAITTRTLT-DLVKAADGGPGV-------FGRKLLRHEM 244

Query: 240 LRSGFLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQ-FCLDRREDKF 298
           LR+G L KV ++L+ AAKG+YIL R+ +T  RLV RL D V++ K M++ F   ++EDKF
Sbjct: 245 LRNGGLEKVGEKLEAAAKGSYILKRELETTSRLVVRLGDAVDNGKAMVRLFGGRKKEDKF 304

Query: 299 ALHV-MKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVI 339
            + V M E+KKN+V  +K+VE++EEH+ LC+V INR+++ +I
Sbjct: 305 GVGVAMDEVKKNNVKIRKRVEDVEEHLCLCIVAINRSKASMI 346

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449533160|ref|XP_004173545.1| PREDICTED: UPF0496 protein 3-like [Cucumis sativus]

 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 136/342 (39%), Positives = 202/342 (59%), Gaps = 36/342 (10%)

Query: 8   RKSLNINEEYLSALRTKSFAECLSKAQLFVTEPSSPSCRHE------KFCE-ILLEPDQ- 59
           +KS N+++EYL  LRT+SFAE       F+   S PS          +F E ILL+P Q 
Sbjct: 31  KKSFNVDDEYLCTLRTQSFAE------FFINPESPPSSASTAVDCCWRFSETILLQPGQL 84

Query: 60  DTIPSILESAVLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFIQLALDTA 119
           +  PSILES+ +  +PELK L  +YF++SA+AS++C +LL N    R   R IQ +LD+ 
Sbjct: 85  EPAPSILESSFILMLPELKGLFTDYFNLSAKASNLCTRLLSNFKLTRSTSRCIQESLDSI 144

Query: 120 DDDQTEPHDKVKLIVSNLNSLIILTNPFSNPSTNEFKVIHDKYSSVLHNLKSKRKKVARK 179
           +  +    + V+ I SN+   + L  PFS+    +F +IHD Y+++ H L   RKKVARK
Sbjct: 145 E--KRFSSETVESIASNV---LALRPPFSDLEKRDFALIHDDYTAISHRLNCTRKKVARK 199

Query: 180 IKLINYVHKASGICITAVCSLIAIAAVVLAAHALTALLIGPMILSFPTKCFKKKLFNFRF 239
           ++ +  +    GI     C L AI    L    + A   GP +       F +KL     
Sbjct: 200 MRWMKIID---GI----TCGLNAITTRTLT-DLVKAADGGPGV-------FGRKLLRHEM 244

Query: 240 LRSGFLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQ-FCLDRREDKF 298
           LR+G L KV ++L+ AAKG+YIL R+ +T  RLV RL D V++ K M++ F   ++EDKF
Sbjct: 245 LRNGGLEKVEEKLEAAAKGSYILKRELETTSRLVVRLGDAVDNGKAMVRLFGGRKKEDKF 304

Query: 299 ALHV-MKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVI 339
            + V M E+KKN+V  +K+VE++EEH+ LC+V INR+++ +I
Sbjct: 305 GVGVAMDEVKKNNVKIRKRVEDVEEHLCLCIVAINRSKASMI 346

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082460|ref|XP_002306700.1| predicted protein [Populus trichocarpa] gi|222856149|gb|EEE93696.1| predicted protein [Populus trichocarpa]

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 99/129 (76%), Positives = 114/129 (88%)

Query: 218 IGPMILSFPTKCFKKKLFNFRFLRSGFLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLH 277
           +GP ILSFP K FKKKL +F+FLRSGFLRKV +QLDVAAK TYILNRDFDTM RLVARLH
Sbjct: 1   MGPAILSFPLKRFKKKLLSFKFLRSGFLRKVGQQLDVAAKATYILNRDFDTMSRLVARLH 60

Query: 278 DEVEHNKVMIQFCLDRREDKFALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQ 337
           DEVEH+K MIQFCL+R+ED+F+  V+KE+KK+  GF+KQVEELEEHVYLCL+TINRAR+ 
Sbjct: 61  DEVEHDKAMIQFCLERKEDRFSFQVIKELKKSDSGFRKQVEELEEHVYLCLLTINRARAL 120

Query: 338 VIKEMVTSS 346
           VIKEM  SS
Sbjct: 121 VIKEMTASS 129

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357123672|ref|XP_003563532.1| PREDICTED: UPF0496 protein At3g19330-like [Brachypodium distachyon]

 Score =  194 bits (493), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 120/340 (35%), Positives = 185/340 (54%), Gaps = 29/340 (8%)

Query: 10  SLNINEEYLSALRTKSFAECLSKAQLFVTEPSSPSCRHEKFCEILLEPDQDTIPSILESA 69
            L+I EEY++ LRT+S    L   Q            +E+  E LL+P +D I  +L   
Sbjct: 10  GLSIEEEYVNTLRTRSNMRFLLNKQ-----------EYEEEMEDLLQPQKDLILPMLHKM 58

Query: 70  VLS-KVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYR----FIQLALDTADDDQT 124
           +   K  EL   +  YFD S EAS IC QLL+NI + +  Y+    F+   L       +
Sbjct: 59  MQEIKSTELGLAMTGYFDASTEASEICRQLLRNIKNTQSNYQSMDNFLASILGCTTATSS 118

Query: 125 EPHDKVKLIVSNLNSLIILTNPFSNPSTNEFKVIHDKYSSVLHNLKSKRKKVARKIKLIN 184
            P          L +  + +NPFS  + ++F+ IHDKYSS+L  +KS  KKVA+K+K++ 
Sbjct: 119 TPL--------ALETFPVRSNPFSTTTRSKFRQIHDKYSSILQTIKSSHKKVAKKLKIMK 170

Query: 185 YVHKASGICITAVCSLIAIAAVVLAAHALT-ALLIGPMILSFPTKCFKKKLFNFRFLRSG 243
            + + S  C+   C  +AI    + AH L  +LL+G  ++       K+++   +  ++ 
Sbjct: 171 VIKRLSRACLIIACGAVAIG---ITAHLLFFSLLVGSAVMGLCPFVLKRRITRLKRSKTK 227

Query: 244 FLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRREDKFALHVM 303
            LR++++QLD  AKGTY+L RDFDT+  LV RL D +E    M  +C++  ++KF +  M
Sbjct: 228 SLRQLQEQLDTVAKGTYVLGRDFDTVSDLVVRLSDGIERENTMAMYCMEMVDEKFPVQEM 287

Query: 304 -KEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKEM 342
             E++++    ++   ELEEHV LCL TI RAR  VI+EM
Sbjct: 288 VMELRRSCSTSKRLAGELEEHVGLCLATIYRARDLVIEEM 327

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545218|ref|XP_002513670.1| conserved hypothetical protein [Ricinus communis] gi|223547578|gb|EEF49073.1| conserved hypothetical protein [Ricinus communis]

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 127/350 (36%), Positives = 192/350 (54%), Gaps = 31/350 (8%)

Query: 10  SLNINEEYLSALRTKSFAE------CLSKAQLFVTEP--SSPSCR---HEKFCEILLEPD 58
            +++ EEY +A RT+S+ E       LS        P  S+ + R   +  F E LL+PD
Sbjct: 20  GVDVREEYANAFRTESYNEFWTHVLALSDGDSVTGIPVESTTAARLPSYRLFVEHLLDPD 79

Query: 59  QDTIPSILESAVLSKVP-ELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFIQLALD 117
           Q T+  IL    L+  P +   LL  YF  +A AS +CG LLK+I+  R  YR ++  L 
Sbjct: 80  QSTVTHIL---TLAHNPTKAHSLLSEYFTQTANASLLCGLLLKDIDHTRARYRSLKTTLQ 136

Query: 118 TADDDQTEPHDKVKLIVSNLNSLIILTNPF--SNPSTNEFKVIHDKYSSVLHNLKSKRKK 175
           + D     P  +  +I++ L       NPF  S PS N+ ++I    S +L +L+S R K
Sbjct: 137 SMDTTLLSPQKRSNIILTRLTEFTTYLNPFHWSAPSPNQVRIIQVDCSKLLKSLESTRDK 196

Query: 176 VARKIKLINYVHKASGICITAVCSLIAIAAVVLAAHALTALLIGPMILSFPTKCFKKKLF 235
              ++ L + +   S + + A   L A   ++LA HAL  L+  P ++   +K       
Sbjct: 197 ARAQLHLKSKLKHGSALFVAA---LTASLTIILATHALALLVATPGLVMASSKLASS--- 250

Query: 236 NFRFLRSGFLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRRE 295
                 S  L KV  QLD+AAKGTYIL RD +T+ RLVARL+DE+EH +  I+F + R E
Sbjct: 251 ------SRRLVKVSAQLDMAAKGTYILCRDLETISRLVARLNDEMEHMRATIKFWVQRGE 304

Query: 296 DKFALH--VMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKEMV 343
                +  V++++KKN   F +Q++E+EEH+YLC +TINRAR+ V+KE++
Sbjct: 305 VWLQANGEVVRQLKKNDCSFGQQLDEMEEHLYLCFMTINRARNLVLKEVL 354

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083134|ref|XP_002306952.1| predicted protein [Populus trichocarpa] gi|222856401|gb|EEE93948.1| predicted protein [Populus trichocarpa]

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/353 (35%), Positives = 188/353 (53%), Gaps = 24/353 (6%)

Query: 11  LNINEEYLSALRTKSFAECLSKAQLF-----------VTEPSSPSCRHEKFCEILLEPDQ 59
           LN+NEEY  A RTKS+ E  SK Q             VT PSS    +    + L EP Q
Sbjct: 31  LNVNEEYKEAFRTKSYVEMWSKVQDQLRKTRVDGVDKVTSPSSSLPFYPHLSDYLFEPQQ 90

Query: 60  D-TIPSILESAVLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFIQ--LAL 116
             T+  ++ES            L++YF+  +EA  ICG LL+ I   R  Y+ I+  + L
Sbjct: 91  QATLGEMIESL------RFHHFLIDYFEARSEACHICGLLLQCIQQTRANYKKIRRVIKL 144

Query: 117 DTADDDQTEPHDKVKL-IVSNLNSLIILTNPFSNPSTN-EFKVIHDKYSSVLHNLKSKRK 174
                D  +  DK+ + +   L +  +L NP S  ST  +F   HD    +LH L S+++
Sbjct: 145 SKRVQDSADYSDKICIAMFRELAAYALLENPLSMFSTTVKFNDFHDNNLVLLHGLNSEQR 204

Query: 175 KVARKIKLINYVHKASGICITAVCSLIAIAAVVLAAHALTALLIGPMILSFPTKCFKKKL 234
           K+ RK K      K +G C+    + + IA +V+A H +  ++  P I+      F+K++
Sbjct: 205 KIMRKAKFRRICMKVAGGCLVISHTALLIALLVIATHGIVGIVAAPGIMGCSLYVFRKQI 264

Query: 235 -FNFRFLRSGFL-RKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLD 292
               R L +  L +++  QLD+AAKGTYIL +DFDTM RLV RL DEVE  K +   C+ 
Sbjct: 265 KLVHRGLETSLLEKRLGAQLDLAAKGTYILIKDFDTMSRLVRRLFDEVERRKALADMCVR 324

Query: 293 RREDKFALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKEMVTS 345
            ++ +    V+KE   + + + +Q+EELE+H+YLC  TINR+R  V+ E++ +
Sbjct: 325 NKKPELLKEVVKEFHTHDLCYLEQLEELEQHIYLCFHTINRSRRLVMDEIMAA 377

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443879|ref|XP_003592217.1| hypothetical protein MTR_1g100200 [Medicago truncatula] gi|355481265|gb|AES62468.1| hypothetical protein MTR_1g100200 [Medicago truncatula]

 Score =  187 bits (475), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 183/354 (51%), Gaps = 40/354 (11%)

Query: 11  LNINEEYLSALRTKSFAECLSKAQLFVTEPSSPSC--RHEK-----------FCEILLEP 57
           +++ EEY +A RT+S+ E  ++   +   P   SC  R E            F E LL+P
Sbjct: 35  VDVREEYANAFRTESYVEFWTRVVSYSNGPQRRSCLSREESTTSTRLPSYRLFAEHLLDP 94

Query: 58  DQDTIPSILESAVLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFIQLALD 117
           DQ T+  IL    L   PE++ LLL+YF  ++ AS +C  LLK+I+ VR +YR +   L 
Sbjct: 95  DQPTVTQILTQTKLQ--PEIQSLLLDYFAYTSNASVLCSHLLKDIDGVRVKYRSLNTILQ 152

Query: 118 TADDDQTEPHDKVKLIVSNLNSLIILTNPFS--NPSTNEFKVIHDKYSSVLHNLKSKRKK 175
               +Q      V  ++   NSL    NPFS   PS    +    + S +   L+S R  
Sbjct: 153 CVTTNQIPSPKVVAHLIEFSNSL----NPFSTSGPSPCRVRSTLCQCSELQKQLESSRDN 208

Query: 176 VARKIKLINYVHKASGICITAVCSLIAIAAVVLA-AHALTALLIGPMILSFPTKCFKKKL 234
              K+K++         C T V  +I  + VVL  AH    L+  P +           L
Sbjct: 209 ARAKLKMVTMFEH----CSTCVVVVITASLVVLVMAHGFALLVAMPGL----------AL 254

Query: 235 FNFRFLRSGFLRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRR 294
            N    R   L KV  QLD AAKGTYILN+D +T  RLVARL+DE EH + M++F L+R+
Sbjct: 255 MNLGSKRK--LTKVTAQLDAAAKGTYILNKDLETTSRLVARLNDEFEHIRTMVKFWLERK 312

Query: 295 EDKFAL--HVMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKEMVTSS 346
           EDK  +   V + +KKN   F   ++ELEEHVYLC +TINRAR  V+ ++  S+
Sbjct: 313 EDKIQVDGEVGRLLKKNQCNFSDLLDELEEHVYLCFMTINRARDLVLNQIDASA 366

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	353
TAIR|locus:2101363	416	AT3G49070 [Arabidopsis thalian	0.286	0.242	0.475	3.5e-31
TAIR|locus:2198591	390	AT1G20180 "AT1G20180" [Arabido	0.963	0.871	0.266	2.7e-29
TAIR|locus:2094123	360	AT3G19250 "AT3G19250" [Arabido	0.263	0.258	0.404	3.7e-21
TAIR|locus:2090624	382	AT3G19330 "AT3G19330" [Arabido	0.917	0.848	0.218	2e-20
TAIR|locus:2116214	374	AT4G34320 "AT4G34320" [Arabido	0.235	0.221	0.290	8e-06
TAIR|locus:2053962	393	AT2G18630 [Arabidopsis thalian	0.266	0.239	0.272	4.2e-05
TAIR|locus:1005716837	412	AT5G66675 "AT5G66675" [Arabido	0.283	0.242	0.269	4.8e-05
TAIR|locus:2173649	408	AT5G66670 "AT5G66670" [Arabido	0.220	0.191	0.290	0.00053

TAIR|locus:2101363 AT3G49070 [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 3.5e-31, Sum P(2) = 3.5e-31
 Identities = 49/103 (47%), Positives = 73/103 (70%)

Query:   245 LRKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRREDKF--ALHV 302
             L K   +LDVAAKGTYIL+RD DT+ RLV R++DEV H + M +F + R   +   +  V
Sbjct:   298 LTKTAARLDVAAKGTYILSRDLDTISRLVTRINDEVNHVRAMAEFWVGRGSGRVRGSEEV 357

Query:   303 MKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKEMVTS 345
              +E+K+    F ++++ELEEH+YLC +TINRAR+ ++KE++ S
Sbjct:   358 ARELKRCEESFSEELDELEEHIYLCFMTINRARNLLVKEILDS 400

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2198591 AT1G20180 "AT1G20180" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 100/375 (26%), Positives = 158/375 (42%)

Query:     1 DEEL-REARKSLNINEEYLSALRTKSFAECLSKA--QLFVTEPS-------SPSCR---- 46
             D+E  R     L++NEEY  A RT S+ E  +KA  QL +T  S       SPS      
Sbjct:    23 DKECCRSLTSKLSVNEEYKEAFRTNSYLETRTKAEDQLGITSCSKLSSSSPSPSSSSDLS 82

Query:    47 -HEKFCEILLEPDQDTIPSILESAVLSKVPELKDLLLNYFDISAEASSICGQLLKNINDV 105
              H  F + LL+P Q+T+ ++++ +       L +L++ +FD+S+EA  +C  LL+ +  +
Sbjct:    83 FHSHFTDYLLDPPQETLDALMQDS------SLDNLIVTFFDLSSEACDVCETLLQCLQQI 136

Query:   106 RYEY----RFIQLALDTADDDQT---EPHDKVKXXXXXXXXXXXXTNPFSNPSTNE--FK 156
             +  +    R +++     +  +T    P                  NP      NE  F+
Sbjct:   137 KINHNKIKRVMKIGKRVCNGAKTLECSPEMLCALIFQELSRFAALKNPLCR-IVNEAQFR 195

Query:   157 VIHDKYSSVLHNXXXXXXXXXXXXXXXNYVHKASGICITXXXXXXXXXXXXXXXXXXXXX 216
             ++HD  S +L                  +  K  G  +                      
Sbjct:   196 IVHDANSDLLTKLTSKKRRIRRKIRFFKFCKKLGGYSLVITHSAIVITLLIIALHSILGV 255

Query:   217 XXGPMIL---SFPTXXXXXXXXXXXXXXSGF-LRKVRKQLDVAAKGTYILNRDFDTMGRL 272
                P +L   SF                    L K+  Q+D+AAKG +IL  D DT+ RL
Sbjct:   256 FAAPALLGLCSFCLLRKKKAKGRMHKSNKDTTLEKLGTQIDIAAKGMFILINDLDTLSRL 315

Query:   273 VARLHDEVEHNKVMIQFCLDRREDKFALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTIN 332
               RL DE+EH K +   C   R+ +     ++E   +   F  Q++ELEEH+YLC  TIN
Sbjct:   316 AGRLCDEIEHRKTVAAMCAKSRKIEVLKEALREFNGHEEKFSDQLQELEEHLYLCFHTIN 375

Query:   333 RARSQVIKEMVTSSS 347
             R+R  V+ ++   SS
Sbjct:   376 RSRRLVLAQITGQSS 390

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2094123 AT3G19250 "AT3G19250" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 3.7e-21, Sum P(2) = 3.7e-21
 Identities = 38/94 (40%), Positives = 67/94 (71%)

Query:   251 QLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRREDKFAL-HVMKEIKKN 309
             QL+VAAKGT+ LN+D DT+ RLV+RLH  V+++K++I+  L+R  D + +   +K+++K+
Sbjct:   263 QLNVAAKGTFALNKDLDTIDRLVSRLHTGVKNDKLLIRLGLERGRDVYTIPEFVKQLRKS 322

Query:   310 HVGFQKQVEELEEHVYLCLVTINRARSQVIKEMV 343
             HV    Q+E L +H+      +N++RS ++KE++
Sbjct:   323 HVNHTHQLEVLVDHICRWFTNVNKSRSLLLKEIL 356

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2090624 AT3G19330 "AT3G19330" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 2.0e-20, P = 2.0e-20
 Identities = 74/338 (21%), Positives = 144/338 (42%)

Query:    10 SLNINEEYLSALRTKSFAECLSKAQLFVTEPSSPSCRHEKFCEILLEPDQDTIPSILESA 69
             + N++ E   A +T S+ +  S+  + V          +   E+LL          ++ A
Sbjct:    44 TFNLSRELAHAFQTPSYHDVRSRVHVVVDLTQIHHRLIQPDIELLLSQVLQPNKECVQEA 103

Query:    70 VLS-KVPELKDLLLNYFDISAEASSICGQLLKNINDVRYE-YRFIQLALDTADDDQTEPH 127
             +   K   L +L+  YF  S +A+ +C  L +N++  R+  Y  +    +    D     
Sbjct:   104 IRHVKQTTLTNLVSTYFQHSEDATRLCLNLYQNVHSARHHLYTPLLDLFNIFPGDSLPAI 163

Query:   128 DKVKXXXXXXXXXXXXT--NPFSNPSTNEFKVIHDKYSSVLHNXXXXXXXXXXXXXXXNY 185
             D+              T  NPFS+P +  F+     +S + HN               ++
Sbjct:   164 DESLCDLAFDVFLKLDTFENPFSSPESYSFRDTQLCFSQLKHNLDRRLRKSRSRVRLIHH 223

Query:   186 VHKASGICITXXXXXXXXXXXXXXXXXXXXXXXGPMILSFPTXXXXXXXXXXXXXXSGFL 245
                 S +C+                          ++++ P               +   
Sbjct:   224 ATAGSSLCLVAAVVAVAASAVVIASHALPIL----LVVAGPLCSPYLPHSFKRKELTNIC 279

Query:   246 RKVRKQLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRREDKFALH-VMK 304
                  QL+ A+KGT++LN+D DT+ RLV+RLH  +E++K +I+  L+R  D  ++  ++K
Sbjct:   280 -----QLNAASKGTFVLNKDLDTIDRLVSRLHTGIEYDKFLIRLGLERGRDVHSIQEILK 334

Query:   305 EIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKEM 342
              ++K+H+    Q+++LE+H+ L    +N+ARS ++ E+
Sbjct:   335 LLRKSHLPLTHQLKDLEDHICLWFTNVNKARSLLLTEI 372

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2116214 AT4G34320 "AT4G34320" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
 Identities = 25/86 (29%), Positives = 43/86 (50%)

Query:   258 GTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRREDKFALHVMKEIKKNHVGFQKQV 317
             GT++  +D D +  L+ RL  E+       +F ++    K  +    +IKK    F+K V
Sbjct:   282 GTFVAVKDLDNIRVLIERLEIEITGMVKSAEFAVEHNAVKIGID---DIKKKLEVFKKNV 338

Query:   318 EELEEHVYLCLVTINRARSQVIKEMV 343
             EEL     LC   I RAR+ +++ ++
Sbjct:   339 EELGTQADLCSRDIRRARTVILQRII 364

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2053962 AT2G18630 [Arabidopsis thaliana (taxid:3702)]

 Score = 93 (37.8 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
 Identities = 27/99 (27%), Positives = 49/99 (49%)

Query:   248 VRKQLDVAAK---GTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRREDKFALHVMK 304
             VR Q ++      GTYI  ++ D +  LV ++  E+E      +F +   E+K     + 
Sbjct:   280 VRGQKEIITSIRIGTYISVKEMDNISILVRKVEVEIESLLKKAEFAIT--EEKEVRLAID 337

Query:   305 EIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKEMV 343
             EIKK    F + +EEL EH       + +AR+ +++ ++
Sbjct:   338 EIKKKLDVFTETIEELGEHAGKYCSDVTKARTVILQRII 376

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

TAIR|locus:1005716837 AT5G66675 "AT5G66675" [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
 Identities = 28/104 (26%), Positives = 53/104 (50%)

Query:   248 VRKQLDVAAK---GTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRREDKFALHV-M 303
             V+ Q D+      G Y+  +D D +   V +L  E+E     + F L  +E++ A+ + M
Sbjct:   294 VKGQKDIVLSMRIGAYVTMKDMDNIRVHVDKLKIEMESMMQKVDFALKEKEEEVAVRLSM 353

Query:   304 KEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVIKEMVTSSS 347
              EI K    F +++EE+ ++   C   I  AR+ V++ +++  S
Sbjct:   354 HEISKKFDVFTERIEEVGDNATKCSKNITLARTIVLRHILSFPS 397

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2173649 AT5G66670 "AT5G66670" [Arabidopsis thaliana (taxid:3702)]

 Score = 81 (33.6 bits), Expect = 0.00053, Sum P(2) = 0.00053
 Identities = 25/86 (29%), Positives = 41/86 (47%)

Query:   251 QLDVAAKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRREDKFALH-VMKEIKKN 309
             +L V A    ++N  F+     V  L   +      + F +DR E++ A    M+EIKK 
Sbjct:   304 ELGVQANNVTMVNIKFE-----VENLSIRISSILKTVNFAVDREENEMATRFAMQEIKKK 358

Query:   310 HVGFQKQVEELEEHVYLC--LVTINR 333
               GF +++EE+ E    C  L+ + R
Sbjct:   359 VEGFTEKIEEVGERAANCSKLIALGR 384

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6DYE5	U496K_ARATH	No assigned EC number	0.3008	0.9546	0.8641	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_II000627 hypothetical protein (361 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	353
pfam05055	336	pfam05055, DUF677, Protein of unknown function (DU	2e-21

>gnl|CDD|218403 pfam05055, DUF677, Protein of unknown function (DUF677)

 Score = 92.9 bits (231), Expect = 2e-21
 Identities = 64/307 (20%), Positives = 132/307 (42%), Gaps = 8/307 (2%)

Query: 41  SSPSCRHEKFCEILLEPDQDTIPSILESA-VLSKVPELKDLLLNYFDISAEASSICGQLL 99
           S       +  + LLE +QD +  I+ES   + +  +L  L+  YF+ + +    C  L 
Sbjct: 27  SLSHDSLMEVTKCLLEMNQDVVKVIIESKEDVWENQDLFSLVNVYFESTKKTLDFCETLE 86

Query: 100 KNINDVRYEYRFIQLAL-----DTADDDQTEPHDKVKLIVSNLNSLIILTNPFSNPS-TN 153
             +         I+ A+     ++ D D  +   K +  +  L     + +PF     T 
Sbjct: 87  NCVERAERSQLLIREAVAQFEKESLDKDVGKKKKKYEKTLEELKKFKAMGDPFDGEEFTT 146

Query: 154 EFKVIHDKYSSVLHNLKSKRKKVARKIKLINYVHKASGICITAVCSLIAIAAVVLAAHAL 213
           +F+ ++ +   +L  L+  +KK+ +K++ I      S +   A    + + +VV AA   
Sbjct: 147 QFQSVYKQQVLMLEELRKTKKKLDKKLRNIKTWRIISNVVFVAAFVAVLVLSVVAAAMGA 206

Query: 214 TALLIGPMILSFPTKCFKKKLFNFRFLRSGFLRKVRKQLDVAAKGTYILNRDFDTMGRLV 273
             ++     L+ P +   K + +        L++ ++ +    KG  +  +D + +  LV
Sbjct: 207 PPVVGVAGALAVPLEAVGKWVGSAWKKYEEALKRQKEIISSMEKGIQVNVKDMENISILV 266

Query: 274 ARLHDEVEHNKVMIQFCLDRREDKFALH-VMKEIKKNHVGFQKQVEELEEHVYLCLVTIN 332
            RL  E+      ++F ++  E++ A+   M EIKK      +++EE+ E    C   I 
Sbjct: 267 DRLESEITSMLKTVEFAVEHEENEVAVRIAMDEIKKKVEVLTEKIEEVGEEAAKCSKFIA 326

Query: 333 RARSQVI 339
           + R+ V+
Sbjct: 327 KGRTVVL 333

This family consists of AT14A like proteins from Arabidopsis thaliana. At14a has a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and localises partly to the plasma membrane. Length = 336

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	353
PF05055	336	DUF677: Protein of unknown function (DUF677); Inte	100.0
PF05633	389	DUF793: Protein of unknown function (DUF793); Inte	99.81
PF05055	336	DUF677: Protein of unknown function (DUF677); Inte	97.58
PF03087	231	DUF241: Arabidopsis protein of unknown function; I	95.83
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	82.77

>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants

Probab=100.00  E-value=5.3e-92  Score=687.91  Aligned_cols=301  Identities=42%  Similarity=0.582  Sum_probs=280.8

Q ss_pred             cccCCCCCCCcchHHHhhhhcCCCcccHHHHHhcc-ccCCCchHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHhHHHH
Q 045225           35 LFVTEPSSPSCRHEKFCEILLEPDQDTIPSILESA-VLSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFIQ  113 (353)
Q Consensus        35 ~~~~~~s~~~~s~~~~~~~LLep~qe~v~~il~~~-~~~~~~~l~~Lv~~YFd~S~~a~d~C~~L~~~I~~aR~~y~~i~  113 (353)
                      .+++.+|.|.+||++|++||||||||||++||+++ ++|++|+|++||++|||+|++||+||++|++||+|||.+|++|+
T Consensus        21 ~~~~~~s~s~~s~~~~t~~Lle~~Qevv~~ile~~~di~~~~~L~~Lv~~YFd~S~~a~~~C~~L~k~I~~aR~~~~~I~  100 (336)
T PF05055_consen   21 TGVETRSLSFDSLKEVTECLLEMNQEVVKVILECKKDIWKNPELFRLVSDYFDSSLEASDFCEALLKCIHRARDNYLPIR  100 (336)
T ss_pred             hccccCCCChHHHHHHHHHHhCCChHHHHHHHHHHHHhhcChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            35566677889999999999999999999999998 59999999999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCC-----CchhHHHHHHHHHhhHhhcCCCCCc-chhhHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHhh
Q 045225          114 LALDTADDDQTE-----PHDKVKLIVSNLNSLIILTNPFSNP-STNEFKVIHDKYSSVLHNLKSKRKKVARKIKLINYVH  187 (353)
Q Consensus       114 ~aL~~~~~~~~~-----~~~~~~~~~~eL~~F~~~~nPF~~~-~~~~F~~i~~~~~~LL~~L~~~k~K~~~Klr~~r~~~  187 (353)
                      ++|++|+.++.+     ++++|++|+++|++|++++|||+++ ++.+||+||++|++||++|+++|+|+++|+|++|+|+
T Consensus       101 ~al~~~~~e~~~~d~g~~~~~~~~tl~eL~~F~~~~NPFs~~~~~~~F~~i~~~~~~Ll~kL~~~k~Kl~kklk~~r~~~  180 (336)
T PF05055_consen  101 RALKQFEKESLDTDVGVSQKKYDKTLEELKKFKAAGNPFSDEEFFHQFQSIHDQQSSLLEKLDSRKKKLRKKLKLVRTWR  180 (336)
T ss_pred             HHHHhhhhccccccccccchhHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999887643     3688999999999999999999998 9999999999999999999999999999999999999


Q ss_pred             hhhchhhHHHHHHHHHHHHHHHHHHH---HH---Hhhhccc-ccccchhHHhhhhhhhhhchhHHHHHHHHHHhhhhcce
Q 045225          188 KASGICITAVCSLIAIAAVVLAAHAL---TA---LLIGPMI-LSFPTKCFKKKLFNFRFLRSGFLRKVRKQLDVAAKGTY  260 (353)
Q Consensus       188 ~vs~~~fvaa~~~v~i~~vV~Aah~v---~~---l~a~P~~-~~~~~~~~~kk~~~~~~~~~~~~~~l~~Qld~aakGty  260 (353)
                      ++|++|||+++++|+|++||+|+|++   +|   ++++|.+ +|+|++++|++++       +.++++++|+|+|+||||
T Consensus       181 kvs~v~fvaa~~aV~i~svv~aa~a~~~vv~~aa~~a~P~~~~gkw~~~~~~k~~-------~al~~~~~~l~~aakGty  253 (336)
T PF05055_consen  181 KVSNVCFVAAFVAVAIASVVAAAHAVPAVVALAAALAAPIGSVGKWCGSLWKKYE-------EALKKQKEQLDAAAKGTY  253 (336)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccchHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHhccc
Confidence            99999999999999999999998643   23   3335664 6789998888765       457889999999999999


Q ss_pred             ecccccccHHHHHHHHHHHHhhhHHHHHHHHhhhhhhH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045225          261 ILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRREDKF-ALHVMKEIKKNHVGFQKQVEELEEHVYLCLVTINRARSQVI  339 (353)
Q Consensus       261 il~~DldTIs~LV~RL~deIe~~~~~v~fave~~e~~~-vk~vv~elkk~~~~f~~qleeLeehv~lCf~tInraR~lVL  339 (353)
                      |+++||||||+||+||+|+|||++++|+||++++++++ +++||+||+|++++|++||||||||||+||+||||||++||
T Consensus       254 I~~~DldTIsrLV~RL~deIE~~~~~v~fave~~~d~~~vk~vv~el~k~~~~f~~qleELeehv~lC~~tInrAR~lVl  333 (336)
T PF05055_consen  254 ILIKDLDTISRLVDRLEDEIEHMKALVDFAVERGEDEEAVKEVVKELKKNVESFTEQLEELEEHVYLCFKTINRARTLVL  333 (336)
T ss_pred             hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999887 99999999999999999999999999999999999999999


Q ss_pred             HHH
Q 045225          340 KEM  342 (353)
Q Consensus       340 ~~I  342 (353)
                      |+|
T Consensus       334 q~I  336 (336)
T PF05055_consen  334 QEI  336 (336)
T ss_pred             hhC
Confidence            998

This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].

>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development

Probab=99.81  E-value=8.2e-19  Score=174.34  Aligned_cols=272  Identities=17%  Similarity=0.210  Sum_probs=197.7

Q ss_pred             hHHHhhhhcCCCcccHHHHHhccc-cCCCchHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHhHHHHHHHhhccCCCCC
Q 045225           47 HEKFCEILLEPDQDTIPSILESAV-LSKVPELKDLLLNYFDISAEASSICGQLLKNINDVRYEYRFIQLALDTADDDQTE  125 (353)
Q Consensus        47 ~~~~~~~LLep~qe~v~~il~~~~-~~~~~~l~~Lv~~YFd~S~~a~d~C~~L~~~I~~aR~~y~~i~~aL~~~~~~~~~  125 (353)
                      .+.+.+.++.-..|.=..|.+.+. .-.+|.+.+||++|||.|.|++|+||++..+|.+.|..|++++-|++.++.....
T Consensus        69 ~~~~ld~~l~~~~efr~li~~~~~~~~s~~~~dk~v~eylD~sVKlLDvCNA~~~gi~~lr~~~~ll~~al~~L~~~~~~  148 (389)
T PF05633_consen   69 MRKALDSFLCCHEEFRALITNLRDLPLSKPPDDKWVDEYLDRSVKLLDVCNAIRDGISQLRQWQLLLQIALHALDSSRPL  148 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            344444554433333333333332 2234669999999999999999999999999999999999999999999776444


Q ss_pred             CchhHHHHHHHHHhhHhhc--C---C----------C----------CC----cchhhHHH------HHHhHHHHHHHHH
Q 045225          126 PHDKVKLIVSNLNSLIILT--N---P----------F----------SN----PSTNEFKV------IHDKYSSVLHNLK  170 (353)
Q Consensus       126 ~~~~~~~~~~eL~~F~~~~--n---P----------F----------~~----~~~~~F~~------i~~~~~~LL~~L~  170 (353)
                      ++.++.++...|..+..+.  +   +          |          +.    .....|++      -.=.++.+|+.  
T Consensus       149 ~~~~~rRAr~aL~dl~~~~~~~~~~~~~~~~~rnrs~~r~~~~~~~~~~s~~~~~~~~~rsls~~vsr~wsa~~~Lq~--  226 (389)
T PF05633_consen  149 GEGQLRRARKALSDLKIAMLDDKDSGSSGGSHRNRSFGRSNSSGRRSSSSSGSRSAGHFRSLSWSVSRNWSAARQLQA--  226 (389)
T ss_pred             cHHHHHHHHHHHHHHHHHHhcccccCcccccccccccccccCCCCCCCCccccCCcccchhhhhhhhhhhhhHHHHHH--
Confidence            6668887777777765311  0   0          0          00    01123443      23345566666  


Q ss_pred             HHHHHHHHHHhhhhHhh-----hhhchhhHHHHHHHHHHHHHHHH-HHH-HHHhh----hcccccccchhHHhhhhhhhh
Q 045225          171 SKRKKVARKIKLINYVH-----KASGICITAVCSLIAIAAVVLAA-HAL-TALLI----GPMILSFPTKCFKKKLFNFRF  239 (353)
Q Consensus       171 ~~k~K~~~Klr~~r~~~-----~vs~~~fvaa~~~v~i~~vV~Aa-h~v-~~l~a----~P~~~~~~~~~~~kk~~~~~~  239 (353)
                           +...|-.+|.-.     .+-..+|++.+++|+||++++|| +.- -|+.+    .| ..+.|..++         
T Consensus       227 -----m~~nL~~Pk~~esak~~gL~~A~Y~m~~vtvFV~~vlVAA~pc~~rgL~~~l~~vP-~~~~WA~s~---------  291 (389)
T PF05633_consen  227 -----MGENLVLPKGKESAKGRGLLRAMYGMKSVTVFVCWVLVAAFPCQDRGLQVHLSAVP-RQFSWAPSF---------  291 (389)
T ss_pred             -----HHhcCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHeeecCCccccCCCCCCc-cccccchHH---------
Confidence                 566666665533     23468999999999999999987 211 13321    23 246788776         


Q ss_pred             hchhHHHHHHHHHHhh-hhcceecccccccHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 045225          240 LRSGFLRKVRKQLDVA-AKGTYILNRDFDTMGRLVARLHDEVEHNKVMIQFCLDRREDKFALHVMKEIKKNHVGFQKQVE  318 (353)
Q Consensus       240 ~~~~~~~~l~~Qld~a-akGtyil~~DldTIs~LV~RL~deIe~~~~~v~fave~~e~~~vk~vv~elkk~~~~f~~qle  318 (353)
                        ...++++.++.+.. .||...+.++|+.|.+.|++|++-++.    ++|.++.++.+.+++.|+||.+..+.+.++|+
T Consensus       292 --~~LQ~rI~eEikkk~~kgs~gLLkEl~~ve~~vr~L~el~d~----~~~p~~~e~~~ev~~~V~EL~~~~~~L~~GLd  365 (389)
T PF05633_consen  292 --ISLQERINEEIKKKERKGSCGLLKELQQVEASVRELHELIDS----FQFPLEEEKEEEVREAVEELARVCEALSQGLD  365 (389)
T ss_pred             --HHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHHHHHHHh----ccCCcchhHHHHHHHHHHHHHHHHHHHHcccH
Confidence              36778899999987 578999999999999999999977764    46777664444599999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 045225          319 ELEEHVYLCLVTINRARSQVIKE  341 (353)
Q Consensus       319 eLeehv~lCf~tInraR~lVL~~  341 (353)
                      .||.+|+.-|+.|-++|+-+|.-
T Consensus       366 pLerqVre~Fh~IV~sR~elLd~  388 (389)
T PF05633_consen  366 PLERQVREVFHRIVRSRTELLDS  388 (389)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHhc
Confidence            99999999999999999998863

Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].

>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants

Probab=97.58  E-value=0.013  Score=58.47  Aligned_cols=91  Identities=14%  Similarity=0.112  Sum_probs=40.6

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHhhh-hHhhhhhchhhH--HHHHHHHHHHHHHHHHHHHHHhhhcc-----cccccchhH
Q 045225          159 HDKYSSVLHNLKSKRKKVARKIKLI-NYVHKASGICIT--AVCSLIAIAAVVLAAHALTALLIGPM-----ILSFPTKCF  230 (353)
Q Consensus       159 ~~~~~~LL~~L~~~k~K~~~Klr~~-r~~~~vs~~~fv--aa~~~v~i~~vV~Aah~v~~l~a~P~-----~~~~~~~~~  230 (353)
                      ..++.++-++-.+..+|++++.+-+ |..|.+...--+  +.|++.+ ++|++++.++++.++.|.     .++.|++++
T Consensus       145 ~~~F~~i~~~~~~Ll~kL~~~k~Kl~kklk~~r~~~kvs~v~fvaa~-~aV~i~svv~aa~a~~~vv~~aa~~a~P~~~~  223 (336)
T PF05055_consen  145 FHQFQSIHDQQSSLLEKLDSRKKKLRKKLKLVRTWRKVSNVCFVAAF-VAVAIASVVAAAHAVPAVVALAAALAAPIGSV  223 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHccchHHH
Confidence            4555555555555555555333222 222222222222  2222222 233334444444432221     235788877


Q ss_pred             HhhhhhhhhhchhHHHHHHHHHH
Q 045225          231 KKKLFNFRFLRSGFLRKVRKQLD  253 (353)
Q Consensus       231 ~kk~~~~~~~~~~~~~~l~~Qld  253 (353)
                      +||....   ..++.+++++|.+
T Consensus       224 gkw~~~~---~~k~~~al~~~~~  243 (336)
T PF05055_consen  224 GKWCGSL---WKKYEEALKKQKE  243 (336)
T ss_pred             hHHHHHH---HHHHHHHHHHHHH
Confidence            7776543   2355555655543

This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].

>PF03087 DUF241: Arabidopsis protein of unknown function; InterPro: IPR004320 This family represents plant proteins of unknown function

Probab=95.83  E-value=1.7  Score=41.06  Aligned_cols=43  Identities=19%  Similarity=0.248  Sum_probs=39.3

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHhHHHHHHHhhcc
Q 045225           78 KDLLLNYFDISAEASSICGQLLKNINDVRYEYRFIQLALDTAD  120 (353)
Q Consensus        78 ~~Lv~~YFd~S~~a~d~C~~L~~~I~~aR~~y~~i~~aL~~~~  120 (353)
                      ..+|++..|.|..-+|+|+.....+-+.+.+.+-+|.+|.-=+
T Consensus        31 ~k~ve~lLd~sL~LLD~c~~~rd~ll~lKe~v~eLqsalRRr~   73 (231)
T PF03087_consen   31 EKWVEELLDGSLRLLDACGTFRDALLQLKEHVQELQSALRRRD   73 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            6899999999999999999999999999999999999886543

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=82.77  E-value=35  Score=30.57  Aligned_cols=20  Identities=20%  Similarity=0.411  Sum_probs=9.4

Q ss_pred             cccccHHHHHHHHHHHHhhh
Q 045225          264 RDFDTMGRLVARLHDEVEHN  283 (353)
Q Consensus       264 ~DldTIs~LV~RL~deIe~~  283 (353)
                      ++++.++..+..+..+++..
T Consensus        95 ~el~~l~~~~~~~~~~l~~~  114 (191)
T PF04156_consen   95 EELDQLQERIQELESELEKL  114 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444443

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	353
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.2 bits (150), Expect = 1e-10
 Identities = 53/392 (13%), Positives = 113/392 (28%), Gaps = 115/392 (29%)

Query: 2   EELREARKSLNINEEYLSALRTKSFAECLSKAQLFVTEPSSPSCRHEKF---CEILLEPD 58
             ++   + L         L++K +  CL    L +    +       F   C+ILL   
Sbjct: 228 HSIQAELRRL---------LKSKPYENCL----LVLLNVQNAKAW-NAFNLSCKILLTTR 273

Query: 59  QDTIPSILESAVLSKVP-----------ELKDLLLNYFDISAE------------ASSIC 95
              +   L +A  + +            E+K LLL Y D   +              SI 
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333

Query: 96  GQLLKNINDVRYEY----------RFIQLALDTADDDQTEPH--------DKVKLIVSNL 137
            + +++     ++             I+ +L+  +  +                +    L
Sbjct: 334 AESIRDGLA-TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392

Query: 138 NSL---------IILTNPFSNPS-----TNEFKV-IHDKYSSVLHNLKSKRKKVARKIKL 182
           + +         +++ N     S       E  + I   Y   L        + A    +
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY---LELKVKLENEYALHRSI 449

Query: 183 INYVHKASGICITAVCSLIAIAAVV---LAAHALTALLIGPMILSFPTKCFKKKLFNFRF 239
           +++ +               +       +  H         M L      F+    +FRF
Sbjct: 450 VDHYNIPKTFDSDD-LIPPYLDQYFYSHIGHHLKNIEHPERMTL------FRMVFLDFRF 502

Query: 240 LRSGFLRKVRKQ--------------LDVAAKGTYILNRDFDTMGRLVARLHD---EVEH 282
           L     +K+R                  +     YI + D     RLV  + D   ++E 
Sbjct: 503 LE----QKIRHDSTAWNASGSILNTLQQLKFYKPYICDND-PKYERLVNAILDFLPKIEE 557

Query: 283 NKV------MIQFCLDRREDKFALHVMKEIKK 308
           N +      +++  L   ++       K++++
Sbjct: 558 NLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00