Citrus Sinensis ID: 045242

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
Protein Sequence
MESFARFYIRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQESTSNSSVQSPIKGALMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLERGNAAV
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEcccEEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHEEHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHEEEEHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MESFARFYIRAKPFLAVILLQFGYAGMSIFSKFalnkgmsphvFAVYRHAVATIVVAPFalildrkvrpkmTLSIFVKILLLGlleptidqnlfytgmkYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLikgpvldlpwtnhnyhqestsnssvqspikGALMITIGCFSWAGFMVLQAITlksyptelSLTALICLMGTIEGTIVALFLERGNAAV
Flexible Loop (DISEMBL)
MESFARFYIRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHqestsnssvqspIKGALMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLERGNAAV
Low Complexity Region (SEG)
MESFARFYIRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQESTSNSSVQSPIKGALMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLERGNAAV
Disordered region (IsUnstruct)
***FARFYIRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYH************IKGALMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLE******
Disordered Region (DISOPRED)
*********RAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLP******************PIKGALMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLERGN***
Disordered Region (DISEMBL)
MESFARFYIRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNY***********SPIKGALMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLERGNAAV
Disordered Region (DISPRO)
**SFARFYIRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPW***************QSPIKGALMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLERGN***
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESFARFYIRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQESTSNSSVQSPIKGALMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLERGNAAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	243	2.2.26 [Sep-21-2011]
O80638	374	WAT1-related protein At2g	yes	no	0.950	0.617	0.719	2e-96
Q9ZUS1	380	WAT1-related protein At2g	no	no	0.946	0.605	0.653	3e-83
Q9FNA5	377	WAT1-related protein At5g	no	no	0.962	0.620	0.5	3e-67
Q9SUF1	384	WAT1-related protein At4g	no	no	0.979	0.619	0.502	2e-64
F4HZQ7	389	WAT1-related protein At1g	no	no	0.950	0.593	0.531	7e-64
Q9LPF1	370	WAT1-related protein At1g	no	no	0.958	0.629	0.525	8e-64
Q501F8	373	WAT1-related protein At4g	no	no	0.958	0.624	0.523	3e-62
Q9FL41	402	WAT1-related protein At5g	no	no	0.995	0.601	0.450	3e-59
F4IQX1	336	WAT1-related protein At2g	no	no	0.872	0.630	0.542	9e-59
Q9LXX8	377	WAT1-related protein At3g	no	no	0.921	0.594	0.466	4e-54

>sp|O80638|WTR14_ARATH WAT1-related protein At2g39510 OS=Arabidopsis thaliana GN=At2g39510 PE=2 SV=1

 Score =  352 bits (903), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 167/232 (71%), Positives = 193/232 (83%), Gaps = 1/232 (0%)

Query: 12  KPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKM 71
           KPF+ V+ LQFGYAG+SI +KFALN+GMSPHV A YRH VATI +APFA  LDRK+RPKM
Sbjct: 7   KPFITVVSLQFGYAGLSIIAKFALNQGMSPHVLASYRHIVATIFIAPFAYFLDRKIRPKM 66

Query: 72  TLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNF 131
           TLSIF KILLLGLLEPTIDQNL+YTGMKYT+ATFT AM NVLPAFAF+MAWI RLEKVN 
Sbjct: 67  TLSIFFKILLLGLLEPTIDQNLYYTGMKYTSATFTAAMTNVLPAFAFIMAWIFRLEKVNV 126

Query: 132 RKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTN-HNYHQESTSNSSVQSPIKGALMI 190
           +K HS AK+ GTIVTVGGAM MT++KGP++ LPW N H+ HQ+S++    Q   KGA +I
Sbjct: 127 KKIHSQAKILGTIVTVGGAMLMTVVKGPLIPLPWANPHDIHQDSSNTGVKQDLTKGASLI 186

Query: 191 TIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLERGNAA 242
            IGC  WAGF+ LQAITLKSYP ELSLTA IC +G+IE TIVALF+ERGN +
Sbjct: 187 AIGCICWAGFINLQAITLKSYPVELSLTAYICFLGSIESTIVALFIERGNPS 238

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUS1|WTR13_ARATH WAT1-related protein At2g37460 OS=Arabidopsis thaliana GN=At2g37460 PE=2 SV=1

 Score =  308 bits (788), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 151/231 (65%), Positives = 181/231 (78%), Gaps = 1/231 (0%)

Query: 10  RAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRP 69
           +A+PF+++++LQ G AGM I SK  LNKGMS +V  VYRHAVATIV+APFA   D+KVRP
Sbjct: 12  KARPFISMVVLQVGLAGMDILSKAVLNKGMSNYVLVVYRHAVATIVMAPFAFYFDKKVRP 71

Query: 70  KMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKV 129
           KMTL IF KI LLGLLEP IDQNL+Y GMKYTTATF TAM NVLPA  F++A+I  LE+V
Sbjct: 72  KMTLMIFFKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAITFVLAYIFGLERV 131

Query: 130 NFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQESTSNSSVQSPIKGALM 189
             R   S  KV GT+ TVGGAM MTL+KGPVLDL WT       +T+ + + S IKGA++
Sbjct: 132 KLRCIRSTGKVVGTLATVGGAMIMTLVKGPVLDLFWTK-GVSAHNTAGTDIHSAIKGAVL 190

Query: 190 ITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLERGN 240
           +TIGCFS+A FM+LQAITL++YP ELSLTA ICLMGTIEGT VAL +E+GN
Sbjct: 191 VTIGCFSYACFMILQAITLRTYPAELSLTAWICLMGTIEGTAVALVMEKGN 241

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNA5|WTR39_ARATH WAT1-related protein At5g13670 OS=Arabidopsis thaliana GN=At5g13670 PE=2 SV=1

 Score =  254 bits (649), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 119/238 (50%), Positives = 166/238 (69%), Gaps = 4/238 (1%)

Query: 10  RAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRP 69
           RA+PF+A++ +Q  YA MSI +K ALNKGMSPHV   YR AVA+ ++ PFALIL+R  RP
Sbjct: 5   RARPFIAIVFIQCLYALMSIVAKLALNKGMSPHVLVAYRMAVASALITPFALILERNTRP 64

Query: 70  KMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKV 129
           K+T  I ++I +L L EP ++QNL+Y+GMK TTATFT+A+ N LPA  F+MA + +LEKV
Sbjct: 65  KLTFKILLQIAILSLFEPVVEQNLYYSGMKLTTATFTSALCNALPAMTFIMACVFKLEKV 124

Query: 130 NFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNH----NYHQESTSNSSVQSPIK 185
              + HS AK+ GT+V +GGAM MT +KG V++LPWT++    N H  +          +
Sbjct: 125 TIERRHSQAKLVGTMVAIGGAMLMTFVKGNVIELPWTSNSRGLNGHTHAMRIPKQADIAR 184

Query: 186 GALMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLERGNAAV 243
           G++M+   CFSW+ +++LQA  L  Y  ELSLTAL+C+MG +E T++ L  ER N +V
Sbjct: 185 GSIMLVASCFSWSCYIILQAKILAQYKAELSLTALMCIMGMLEATVMGLIWERKNMSV 242

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUF1|WTR31_ARATH WAT1-related protein At4g08290 OS=Arabidopsis thaliana GN=At4g08290 PE=2 SV=1

 Score =  245 bits (626), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 121/241 (50%), Positives = 171/241 (70%), Gaps = 3/241 (1%)

Query: 1   MESFARFYIRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFA 60
           ME  +    + +P+L +I LQFG AG  I     LN+G + +V  VYR+ VA +V+APFA
Sbjct: 1   MEGVSATMHKLRPYLLMIFLQFGAAGTYIVIMATLNQGQNRYVVIVYRNLVAALVLAPFA 60

Query: 61  LILDRKVRPKMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLM 120
           LI +RKVRPKMTLS+  KI+ LG LEP +DQ   Y GM  T+AT+T+A+ N+LP+  F++
Sbjct: 61  LIFERKVRPKMTLSVLWKIMALGFLEPVLDQGFGYLGMNMTSATYTSAIMNILPSVTFII 120

Query: 121 AWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQES--TSNS 178
           AWI+R+EKVN  +  S AK+ GT+V +GGA+ MTL KGP++ LPW+N N  Q++  T+NS
Sbjct: 121 AWILRMEKVNIAEVRSKAKIIGTLVGLGGALVMTLYKGPLIPLPWSNPNMDQQNGHTNNS 180

Query: 179 SVQSP-IKGALMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLE 237
              +  + G L+I +GC +W+GF VLQ+IT+K+YP +LSL+ALICL G ++   VAL +E
Sbjct: 181 QDHNNWVVGTLLILLGCVAWSGFYVLQSITIKTYPADLSLSALICLAGAVQSFAVALVVE 240

Query: 238 R 238
           R
Sbjct: 241 R 241

Arabidopsis thaliana (taxid: 3702)

>sp|F4HZQ7|WTR5_ARATH WAT1-related protein At1g21890 OS=Arabidopsis thaliana GN=At1g21890 PE=2 SV=1

 Score =  243 bits (621), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 128/241 (53%), Positives = 164/241 (68%), Gaps = 10/241 (4%)

Query: 12  KPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKM 71
           KP+LA+I +QFGYAGM I +  +L  GM+ +V AVYRHA+AT V+APFAL  +RK+RPKM
Sbjct: 10  KPYLAMISMQFGYAGMYIITMVSLKHGMNHYVLAVYRHAIATAVIAPFALFHERKIRPKM 69

Query: 72  TLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNF 131
           T  IF++I LLG +EP +DQNL+Y GM YT+ATF +A ANVLPA  F++A I RLE VNF
Sbjct: 70  TFRIFLQIALLGFIEPVLDQNLYYVGMTYTSATFASATANVLPAITFVLAIIFRLESVNF 129

Query: 132 RKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDL----------PWTNHNYHQESTSNSSVQ 181
           +K  S AKV GT++TV GA+ MTL KGP++D                  H  + + +  +
Sbjct: 130 KKVRSIAKVVGTVITVSGALLMTLYKGPIVDFIRFGGGGGGGSDGAGGSHGGAGAAAMDK 189

Query: 182 SPIKGALMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLERGNA 241
             I G LM+    F WAGF +LQ+ TLK YP ELSLT LICLMGT+EGT V+L   R  +
Sbjct: 190 HWIPGTLMLLGRTFGWAGFFILQSFTLKQYPAELSLTTLICLMGTLEGTAVSLVTVRDLS 249

Query: 242 A 242
           A
Sbjct: 250 A 250

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPF1|WTR8_ARATH WAT1-related protein At1g44800 OS=Arabidopsis thaliana GN=At1g44800 PE=1 SV=1

 Score =  243 bits (620), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 123/234 (52%), Positives = 162/234 (69%), Gaps = 1/234 (0%)

Query: 10  RAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRP 69
           + KP LA+I LQFGYAGM I +  +   GM   V A YRH VAT+V+APFAL+ +RK+RP
Sbjct: 8   KIKPILAIISLQFGYAGMYIITMVSFKHGMDHWVLATYRHVVATVVMAPFALMFERKIRP 67

Query: 70  KMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKV 129
           KMTL+IF ++L LG+LEP +DQNL+Y G+K T+A++T+A  N LPA  F++A I RLE V
Sbjct: 68  KMTLAIFWRLLALGILEPLMDQNLYYIGLKNTSASYTSAFTNALPAVTFILALIFRLETV 127

Query: 130 NFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHN-YHQESTSNSSVQSPIKGAL 188
           NFRK HS AKV GT++TVGGAM MTL KGP +++    HN +H  S+S  + Q  + G +
Sbjct: 128 NFRKVHSVAKVVGTVITVGGAMIMTLYKGPAIEIVKAAHNSFHGGSSSTPTGQHWVLGTI 187

Query: 189 MITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLERGNAA 242
            I     +WA F +LQ+ TLK YP ELSL  LIC +GTI   I +L + R  +A
Sbjct: 188 AIMGSISTWAAFFILQSYTLKVYPAELSLVTLICGIGTILNAIASLIMVRDPSA 241

Arabidopsis thaliana (taxid: 3702)

>sp|Q501F8|WTR32_ARATH WAT1-related protein At4g08300 OS=Arabidopsis thaliana GN=At4g08300 PE=2 SV=1

 Score =  238 bits (607), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 124/237 (52%), Positives = 161/237 (67%), Gaps = 4/237 (1%)

Query: 10  RAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRP 69
           + KP +A+I LQFGYAGM I +  +   GM+  + A YRH VATIV+APFALIL+RK+RP
Sbjct: 8   KLKPIIAIISLQFGYAGMYIITMVSFKHGMNHWILATYRHVVATIVIAPFALILERKIRP 67

Query: 70  KMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKV 129
           KMT  +F++IL LG LEP +DQNL+Y GMK T+AT+++A  N LPA  F+MA I R+E V
Sbjct: 68  KMTWPLFLRILALGFLEPLLDQNLYYIGMKATSATYSSAFVNALPAITFIMAVIFRIETV 127

Query: 130 NFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNH-NYHQESTSNSSV---QSPIK 185
           N +K  S AKV GT +TVGGAM MTL KGP ++L  T H + H  S+  SS    Q+ + 
Sbjct: 128 NLKKTRSLAKVIGTAITVGGAMVMTLYKGPAIELFKTAHSSLHGGSSGTSSETTDQNWVT 187

Query: 186 GALMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLERGNAA 242
           G L +     +WAGF +LQ+ TLK YP ELSL   IC MGT+  TI +L + R  +A
Sbjct: 188 GTLAVMGSITTWAGFFILQSFTLKKYPAELSLVMWICAMGTVLNTIASLIMVRDVSA 244

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL41|WTR38_ARATH WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1

 Score =  228 bits (581), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 113/251 (45%), Positives = 168/251 (66%), Gaps = 9/251 (3%)

Query: 1   MESFARFYIRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFA 60
           + S   F   +KP+ A+I LQFGYAGM+I +K +LN GMS +V  VYRHA+AT V+APFA
Sbjct: 6   ISSCESFLTSSKPYFAMISLQFGYAGMNIITKISLNTGMSHYVLVVYRHAIATAVIAPFA 65

Query: 61  LILDRKVRPKMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLM 120
              +RK +PK+T SIF+++ +LGLL P IDQN +Y G+KYT+ TF+ AM+N+LPA  F++
Sbjct: 66  FFFERKAQPKITFSIFMQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFIL 125

Query: 121 AWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQESTSNSSV 180
           A + R+E ++ +K    AK+ GT+VTV GAM MT+ KGP+++L WT + + Q+S+  ++ 
Sbjct: 126 AVLFRMEMLDLKKLWCQAKIAGTVVTVAGAMLMTIYKGPIVELFWTKYMHIQDSSHANTT 185

Query: 181 QSP--------IKGALMITIGCFSWAGFMVLQAITLKSYPT-ELSLTALICLMGTIEGTI 231
            S         +KG++++     +WA   VLQA  LK+Y   +LSLT LIC +GT++   
Sbjct: 186 SSKNSSSDKEFLKGSILLIFATLAWASLFVLQAKILKTYAKHQLSLTTLICFIGTLQAVA 245

Query: 232 VALFLERGNAA 242
           V   +E   +A
Sbjct: 246 VTFVMEHNPSA 256

Arabidopsis thaliana (taxid: 3702)

>sp|F4IQX1|WTR12_ARATH WAT1-related protein At2g37450 OS=Arabidopsis thaliana GN=At2g37450 PE=2 SV=1

 Score =  226 bits (577), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 127/234 (54%), Positives = 156/234 (66%), Gaps = 22/234 (9%)

Query: 10  RAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRP 69
           +A PF+ ++LLQ GYAGM I +K  LNKGMS +V +VYRH VAT+V+APFA   D     
Sbjct: 6   KALPFILMVLLQIGYAGMDILTKDVLNKGMSIYVLSVYRHGVATVVMAPFAFYFD----- 60

Query: 70  KMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKV 129
                            P I QNLF  GMKYTTATF  A+ N LPA  F++A I RLE V
Sbjct: 61  ----------------NPVIAQNLFNLGMKYTTATFAIALYNTLPAVTFILALIFRLESV 104

Query: 130 NFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQESTSNSSVQSPIKGALM 189
            F+   S AKV GT+ TVGG M MTL+KGP LDL WT     Q +T  + + S IKGA++
Sbjct: 105 KFQSIRSAAKVVGTVTTVGGIMVMTLVKGPALDLFWTKGPSAQ-NTVGTDIHSSIKGAVL 163

Query: 190 ITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLERGNAAV 243
           +TIGCFS+A FM+LQAITLK+YP ELSL   ICL+GTIEG +VAL +E+GN +V
Sbjct: 164 VTIGCFSYACFMILQAITLKTYPAELSLATWICLIGTIEGVVVALVMEKGNPSV 217

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXX8|WTR27_ARATH WAT1-related protein At3g56620 OS=Arabidopsis thaliana GN=At3g56620 PE=2 SV=1

 Score =  211 bits (536), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 106/227 (46%), Positives = 150/227 (66%), Gaps = 3/227 (1%)

Query: 11  AKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPK 70
           AKP+ A++ LQFGYAGM++ +K  L++GMS +V   YR+A AT  +APFAL+ +RKVRPK
Sbjct: 9   AKPYFAMVCLQFGYAGMNLVTKVVLDRGMSHYVLVAYRNAFATAAIAPFALLSERKVRPK 68

Query: 71  MTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVN 130
           MT  IF++I +L LL P IDQNL+Y G+K T+ TF  A+ N++PA  F+++ I R+EKV 
Sbjct: 69  MTFPIFMQIFVLALLGPLIDQNLYYAGLKLTSPTFAGAVTNIVPALTFIISIICRMEKVE 128

Query: 131 FRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQESTSNSSVQSPIKGALMI 190
            RK    AKV GT+V V GAM M L K P++    ++   H  S +    +  +K  + +
Sbjct: 129 MRKVRFQAKVVGTLVIVVGAMLMILFKIPLITFLRSHLTGHALSPAG---EDYLKATVFL 185

Query: 191 TIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLE 237
            I  FSWA F VLQA TLK Y + LSL+ ++C MGT++ T +   +E
Sbjct: 186 LIASFSWASFFVLQAATLKRYSSHLSLSTMVCFMGTLQSTALTFVME 232

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
224100927	380	predicted protein [Populus trichocarpa]	0.987	0.631	0.733	2e-99
224109582	350	predicted protein [Populus trichocarpa]	0.983	0.682	0.736	2e-98
255575124	381	Auxin-induced protein 5NG4, putative [Ri	0.962	0.614	0.714	6e-96
15225480	374	nodulin MtN21-like protein [Arabidopsis	0.950	0.617	0.719	9e-95
297827555	375	nodulin MtN21 family protein [Arabidopsi	0.950	0.616	0.711	5e-94
225449607	371	PREDICTED: auxin-induced protein 5NG4 [V	0.958	0.628	0.648	5e-86
449448663	375	PREDICTED: auxin-induced protein 5NG4-li	0.983	0.637	0.633	2e-85
224087387	348	predicted protein [Populus trichocarpa]	0.962	0.672	0.655	9e-84
449502577	368	PREDICTED: auxin-induced protein 5NG4-li	0.958	0.633	0.636	2e-83
359481510	396	PREDICTED: auxin-induced protein 5NG4-li	0.995	0.611	0.625	1e-82

>gi|224100927|ref|XP_002312071.1| predicted protein [Populus trichocarpa] gi|222851891|gb|EEE89438.1| predicted protein [Populus trichocarpa]

 Score =  367 bits (942), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 176/240 (73%), Positives = 199/240 (82%)

Query: 1   MESFARFYIRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFA 60
           M + +  Y RAKPFLAVILLQFGYAGM   +K AL++GMS HV  VYRHAVATIV+APFA
Sbjct: 1   MATASSSYDRAKPFLAVILLQFGYAGMFTMTKHALDEGMSQHVLVVYRHAVATIVIAPFA 60

Query: 61  LILDRKVRPKMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLM 120
           L+ DRKVRPKMTLSIF KI+LLGLLEPTIDQNL+YTGMKYTTATFT+AM NVLPAFAFLM
Sbjct: 61  LVFDRKVRPKMTLSIFFKIMLLGLLEPTIDQNLYYTGMKYTTATFTSAMCNVLPAFAFLM 120

Query: 121 AWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQESTSNSSV 180
           AW +R+E+VN RK HS AK+FGTIVTVGGAM MTL+KG  LDLPWT     Q STS  + 
Sbjct: 121 AWALRIEQVNIRKMHSQAKIFGTIVTVGGAMLMTLVKGTQLDLPWTRGYDQQASTSALTK 180

Query: 181 QSPIKGALMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLERGN 240
           Q PIKGALMI  GC  WA F++LQ+ITLKSYP ELSLTA IC MGTIEG++VA+ +ERGN
Sbjct: 181 QDPIKGALMIATGCVCWASFIILQSITLKSYPVELSLTAWICFMGTIEGSMVAVVMERGN 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109582|ref|XP_002315243.1| predicted protein [Populus trichocarpa] gi|222864283|gb|EEF01414.1| predicted protein [Populus trichocarpa]

 Score =  364 bits (934), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 176/239 (73%), Positives = 196/239 (82%)

Query: 2   ESFARFYIRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFAL 61
           ES    Y +AKPFLAV+L+QFGYAGMSI SK ALN+GMS HV  VYRHAVATIV+APFA 
Sbjct: 4   ESSDSPYDKAKPFLAVVLMQFGYAGMSIISKHALNEGMSQHVLVVYRHAVATIVIAPFAF 63

Query: 62  ILDRKVRPKMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMA 121
           I DRKVRPKMTLSIF KI+L+GLLEPTIDQNL+YTGMKYTTATF +AM N+LPAFAFLMA
Sbjct: 64  IFDRKVRPKMTLSIFFKIMLMGLLEPTIDQNLYYTGMKYTTATFASAMCNILPAFAFLMA 123

Query: 122 WIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQESTSNSSVQ 181
           W +RLEKVN RK HS AK+ GTIVTVGGAM MTL+KG  LDLPWT       ST   + Q
Sbjct: 124 WALRLEKVNIRKMHSQAKIIGTIVTVGGAMLMTLVKGTQLDLPWTKGYDQHASTGGLTKQ 183

Query: 182 SPIKGALMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLERGN 240
            PIKGALMIT GC  WA F++LQAITLKSYP ELSLTA IC MGTIEGT++A+ +ERGN
Sbjct: 184 DPIKGALMITTGCACWASFIILQAITLKSYPVELSLTAWICFMGTIEGTVLAVVMERGN 242

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575124|ref|XP_002528467.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223532143|gb|EEF33950.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  355 bits (912), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 168/235 (71%), Positives = 199/235 (84%), Gaps = 1/235 (0%)

Query: 7   FYIRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRK 66
           FY +AKPFLAVILLQFGYAG+SI SKFALN+GMS HV  VYRHAVATIV+ PFA++ DRK
Sbjct: 9   FYGKAKPFLAVILLQFGYAGLSIISKFALNQGMSQHVLVVYRHAVATIVITPFAILFDRK 68

Query: 67  VRPKMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRL 126
           VRPKMT+SIF+KIL++GLLEPTIDQNL+YTGMKYTTATF   M N+LPAFAF+MAWI+RL
Sbjct: 69  VRPKMTISIFLKILMMGLLEPTIDQNLYYTGMKYTTATFAATMCNILPAFAFIMAWILRL 128

Query: 127 EKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTN-HNYHQESTSNSSVQSPIK 185
           EKVN ++ HS AK+ GTIVTVGGAM MTL+KG  L+LPWT  +N  Q S+S  ++Q  IK
Sbjct: 129 EKVNLKRVHSQAKLLGTIVTVGGAMIMTLVKGAKLNLPWTEGYNDIQGSSSAPTMQDTIK 188

Query: 186 GALMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLERGN 240
           GA +I +GC  W+ F++LQAITLK+YP ELSLTA ICLMGTIEGTI A+ +ERGN
Sbjct: 189 GASLIGVGCICWSAFIILQAITLKTYPAELSLTAFICLMGTIEGTIFAVIMERGN 243

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225480|ref|NP_181483.1| nodulin MtN21-like protein [Arabidopsis thaliana] gi|3355480|gb|AAC27842.1| nodulin-like protein [Arabidopsis thaliana] gi|30017241|gb|AAP12854.1| At2g39510 [Arabidopsis thaliana] gi|110743791|dbj|BAE99731.1| nodulin-like protein [Arabidopsis thaliana] gi|330254594|gb|AEC09688.1| nodulin MtN21-like protein [Arabidopsis thaliana]

 Score =  352 bits (903), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 167/232 (71%), Positives = 193/232 (83%), Gaps = 1/232 (0%)

Query: 12  KPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKM 71
           KPF+ V+ LQFGYAG+SI +KFALN+GMSPHV A YRH VATI +APFA  LDRK+RPKM
Sbjct: 7   KPFITVVSLQFGYAGLSIIAKFALNQGMSPHVLASYRHIVATIFIAPFAYFLDRKIRPKM 66

Query: 72  TLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNF 131
           TLSIF KILLLGLLEPTIDQNL+YTGMKYT+ATFT AM NVLPAFAF+MAWI RLEKVN 
Sbjct: 67  TLSIFFKILLLGLLEPTIDQNLYYTGMKYTSATFTAAMTNVLPAFAFIMAWIFRLEKVNV 126

Query: 132 RKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTN-HNYHQESTSNSSVQSPIKGALMI 190
           +K HS AK+ GTIVTVGGAM MT++KGP++ LPW N H+ HQ+S++    Q   KGA +I
Sbjct: 127 KKIHSQAKILGTIVTVGGAMLMTVVKGPLIPLPWANPHDIHQDSSNTGVKQDLTKGASLI 186

Query: 191 TIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLERGNAA 242
            IGC  WAGF+ LQAITLKSYP ELSLTA IC +G+IE TIVALF+ERGN +
Sbjct: 187 AIGCICWAGFINLQAITLKSYPVELSLTAYICFLGSIESTIVALFIERGNPS 238

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827555|ref|XP_002881660.1| nodulin MtN21 family protein [Arabidopsis lyrata subsp. lyrata] gi|297327499|gb|EFH57919.1| nodulin MtN21 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  349 bits (896), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 165/232 (71%), Positives = 191/232 (82%), Gaps = 1/232 (0%)

Query: 12  KPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKM 71
           KPF+ V+ LQFGYAG+SI +KFALN+GMSPHV A YRH VATI +APFA  LDRK+RPKM
Sbjct: 7   KPFITVVSLQFGYAGLSIIAKFALNQGMSPHVLAAYRHIVATIFIAPFAYFLDRKIRPKM 66

Query: 72  TLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNF 131
           TL IF KILLLGLLEPTIDQNL+YTGMKYT+ATFT AM NVLPAFAF+MAWI RLEKVN 
Sbjct: 67  TLPIFFKILLLGLLEPTIDQNLYYTGMKYTSATFTAAMTNVLPAFAFIMAWIFRLEKVNV 126

Query: 132 RKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTN-HNYHQESTSNSSVQSPIKGALMI 190
           +K HS AK+ GT+VTVGGAM MT++KGP++ LPW N H+ HQ+ ++    Q   KGA +I
Sbjct: 127 KKIHSQAKILGTVVTVGGAMLMTVVKGPLIPLPWANPHDIHQDPSNTGVQQDLTKGASLI 186

Query: 191 TIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLERGNAA 242
            IGC  WAGF+ LQAITLKSYP ELSLTA IC MG+IE TIVALF+ERGN +
Sbjct: 187 AIGCICWAGFINLQAITLKSYPVELSLTAYICFMGSIESTIVALFIERGNPS 238

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449607|ref|XP_002284091.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera] gi|296086275|emb|CBI31716.3| unnamed protein product [Vitis vinifera]

 Score =  323 bits (827), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 153/236 (64%), Positives = 189/236 (80%), Gaps = 3/236 (1%)

Query: 9   IRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVR 68
           ++A P LAV+LLQFGYAG+SI +K+ALN GM+ + F VYRH +A  V+APFA++L+RK  
Sbjct: 13  MQAMPILAVVLLQFGYAGLSIIAKYALNAGMNHYTFVVYRHVIAAAVIAPFAIVLERKRW 72

Query: 69  PKMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEK 128
           P+MT+SIF KI+L+GLLEP IDQNL+Y GMK TTATFTTAM+N++PAF FL+A ++RLEK
Sbjct: 73  PRMTVSIFAKIMLMGLLEPVIDQNLYYVGMKNTTATFTTAMSNIIPAFTFLVALVLRLEK 132

Query: 129 VNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTN-HNYHQESTSNSSVQSPIKGA 187
           VN R+ HS AKV GT+VTVGGAM MTL+KGP  DLPWT   +YHQ STS    Q PIKGA
Sbjct: 133 VNLRRLHSQAKVVGTLVTVGGAMLMTLVKGPAPDLPWTKGRHYHQSSTSQQ--QHPIKGA 190

Query: 188 LMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLERGNAAV 243
           LMIT GC  WA F+ LQA T+KSYP +LSLT LICLMG +EG +V L +E GNA++
Sbjct: 191 LMITAGCVCWACFLNLQARTVKSYPAQLSLTTLICLMGALEGAMVTLIIEHGNASI 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448663|ref|XP_004142085.1| PREDICTED: auxin-induced protein 5NG4-like [Cucumis sativus]

 Score =  321 bits (822), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 152/240 (63%), Positives = 188/240 (78%), Gaps = 1/240 (0%)

Query: 5   ARFYIRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILD 64
           +++ + AKPF AV+ LQFG AGM I SK ALN+GMS +V  VYRHAVATIV+APFALI D
Sbjct: 6   SQWCVSAKPFFAVVFLQFGLAGMDILSKAALNQGMSNYVLVVYRHAVATIVIAPFALIFD 65

Query: 65  RKVRPKMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWII 124
           +KVRPKMT+ +F K+++L LLEP IDQNL++ GMKYTTATF  AM N+LPA  F+MAWI+
Sbjct: 66  KKVRPKMTIPVFAKLMVLSLLEPVIDQNLYFMGMKYTTATFAAAMCNILPAITFVMAWIL 125

Query: 125 RLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQ-ESTSNSSVQSP 183
           RLEKV  +   S AK+ GT+ TVGGAM MTL+KGP+++L W     +  +     S+Q  
Sbjct: 126 RLEKVRIKSIRSQAKIVGTVATVGGAMIMTLMKGPIVELFWVKERANNPQQRGEISLQHT 185

Query: 184 IKGALMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLERGNAAV 243
           IKG++MITIGCFSWA FM+LQAITLK+YP ELSLTA ICL+GT EGT+VAL +ERGN AV
Sbjct: 186 IKGSIMITIGCFSWACFMILQAITLKAYPAELSLTAWICLLGTAEGTVVALVMERGNPAV 245

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087387|ref|XP_002308146.1| predicted protein [Populus trichocarpa] gi|222854122|gb|EEE91669.1| predicted protein [Populus trichocarpa]

 Score =  315 bits (808), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 154/235 (65%), Positives = 183/235 (77%), Gaps = 1/235 (0%)

Query: 10  RAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRP 69
           RAKPF+AVI LQ G+AGM I SK ALN+GMS +V  VYRHAVAT+V+APFA ILD+K+RP
Sbjct: 6   RAKPFVAVIFLQVGFAGMDILSKAALNQGMSNYVLVVYRHAVATVVIAPFAAILDKKLRP 65

Query: 70  KMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKV 129
           KMTLSIF+K++ L LLEP IDQNL++ GMKYTTATF  A+ NVLPA  F++AWI+RLEKV
Sbjct: 66  KMTLSIFIKLVALSLLEPVIDQNLYFLGMKYTTATFAAAIVNVLPAITFIIAWIVRLEKV 125

Query: 130 NFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHN-YHQESTSNSSVQSPIKGAL 188
                HS AK+ GTI TV GAM MTL+KGP+++      N YH+  T    + S IKGAL
Sbjct: 126 KIGSLHSQAKLAGTIATVAGAMLMTLMKGPLIEFFRIKGNAYHENGTGGIDLHSSIKGAL 185

Query: 189 MITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLERGNAAV 243
           MIT+GCFSWA FM+LQAITLKSYP ELSLTA ICL+GTIEG +VAL  E G  +V
Sbjct: 186 MITVGCFSWACFMILQAITLKSYPAELSLTAWICLLGTIEGAVVALVAENGKPSV 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502577|ref|XP_004161682.1| PREDICTED: auxin-induced protein 5NG4-like [Cucumis sativus]

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 149/234 (63%), Positives = 183/234 (78%), Gaps = 1/234 (0%)

Query: 11  AKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPK 70
           ++ F AV+ LQFG AGM I SK ALN+GMS +V  VYRHAVATIV+APFALI D+KVRPK
Sbjct: 5   SQAFFAVVFLQFGLAGMDILSKAALNQGMSNYVLVVYRHAVATIVIAPFALIFDKKVRPK 64

Query: 71  MTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVN 130
           MT+ +F K+++L LLEP IDQNL++ GMKYTTATF  AM N+LPA  F+MAWI+RLEKV 
Sbjct: 65  MTIPVFAKLMVLSLLEPVIDQNLYFMGMKYTTATFAAAMCNILPAITFVMAWILRLEKVR 124

Query: 131 FRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQ-ESTSNSSVQSPIKGALM 189
            +   S AK+ GT+ TVGGAM MTL+KGP+++L W     +  +     S+Q  IKG++M
Sbjct: 125 IKSIRSQAKIVGTVATVGGAMIMTLMKGPIVELFWVKERANNPQQRGEISLQHTIKGSIM 184

Query: 190 ITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLERGNAAV 243
           ITIGCFSWA FM+LQAITLK+YP ELSLTA ICL+GT EGT+VAL +ERGN AV
Sbjct: 185 ITIGCFSWACFMILQAITLKAYPAELSLTAWICLLGTAEGTVVALVMERGNPAV 238

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481510|ref|XP_002274909.2| PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 152/243 (62%), Positives = 184/243 (75%), Gaps = 1/243 (0%)

Query: 2   ESFARFYIRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFAL 61
           +S  R   R KPFLAV  LQFG+AGM +FSK ALN+G+S +V  VYRHA+AT  +APFA+
Sbjct: 8   KSTYRLLYRVKPFLAVTFLQFGFAGMDVFSKVALNQGVSNYVLVVYRHAIATAFIAPFAV 67

Query: 62  ILDRKVRPKMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMA 121
           ILD+KVRPKMT SIF K++LL LLEP IDQNL+Y G+KYTTATF  AM N+LPA  FLMA
Sbjct: 68  ILDKKVRPKMTFSIFTKLMLLSLLEPVIDQNLYYFGLKYTTATFAAAMYNILPAITFLMA 127

Query: 122 WIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQE-STSNSSV 180
            I  LEKV  +  HS AKV GT+ TV GAM MTL+KGPV++L WT    +Q      +++
Sbjct: 128 CIFGLEKVTLKSIHSQAKVVGTVATVAGAMLMTLVKGPVIELIWTKGRNNQGVKGGGTNI 187

Query: 181 QSPIKGALMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLERGN 240
              IKG+LMIT GCFSWA F++LQAITLK+YP ELSLTA ICL+GT +GTIVAL +ERG 
Sbjct: 188 HDSIKGSLMITAGCFSWACFIILQAITLKTYPAELSLTAWICLLGTAQGTIVALVMERGK 247

Query: 241 AAV 243
            +V
Sbjct: 248 TSV 250

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
TAIR|locus:2039792	374	UMAMIT14 "AT2G39510" [Arabidop	0.942	0.612	0.726	3.2e-88
TAIR|locus:2049847	380	UMAMIT12 "Usually multiple aci	0.946	0.605	0.653	2.4e-76
TAIR|locus:2173189	377	UMAMIT15 "Usually multiple aci	0.962	0.620	0.5	7.9e-62
TAIR|locus:2049837	336	UMAMIT13 "Usually multiple aci	0.641	0.464	0.598	1.3e-61
TAIR|locus:2132447	384	UMAMIT20 "Usually multiple aci	0.979	0.619	0.502	4.3e-61
TAIR|locus:2194864	370	SIAR1 "Siliques Are Red 1" [Ar	0.958	0.629	0.525	1.9e-60
TAIR|locus:2201148	389	UMAMIT19 "Usually multiple aci	0.950	0.593	0.531	1.9e-60
TAIR|locus:2132457	373	UMAMIT17 "Usually multiple aci	0.958	0.624	0.523	2.2e-59
TAIR|locus:2169414	402	UMAMIT9 "Usually multiple acid	0.995	0.601	0.466	2.2e-57
TAIR|locus:2102629	377	UMAMIT10 "Usually multiple aci	0.921	0.594	0.466	1.5e-51

TAIR|locus:2039792 UMAMIT14 "AT2G39510" [Arabidopsis thaliana (taxid:3702)]

 Score = 881 (315.2 bits), Expect = 3.2e-88, P = 3.2e-88
 Identities = 167/230 (72%), Positives = 192/230 (83%)

Query:    12 KPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKM 71
             KPF+ V+ LQFGYAG+SI +KFALN+GMSPHV A YRH VATI +APFA  LDRK+RPKM
Sbjct:     7 KPFITVVSLQFGYAGLSIIAKFALNQGMSPHVLASYRHIVATIFIAPFAYFLDRKIRPKM 66

Query:    72 TLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNF 131
             TLSIF KILLLGLLEPTIDQNL+YTGMKYT+ATFT AM NVLPAFAF+MAWI RLEKVN 
Sbjct:    67 TLSIFFKILLLGLLEPTIDQNLYYTGMKYTSATFTAAMTNVLPAFAFIMAWIFRLEKVNV 126

Query:   132 RKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTN-HNYHQESTSNSSVQSPIKGALMI 190
             +K HS AK+ GTIVTVGGAM MT++KGP++ LPW N H+ HQ+S++    Q   KGA +I
Sbjct:   127 KKIHSQAKILGTIVTVGGAMLMTVVKGPLIPLPWANPHDIHQDSSNTGVKQDLTKGASLI 186

Query:   191 TIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLERGN 240
              IGC  WAGF+ LQAITLKSYP ELSLTA IC +G+IE TIVALF+ERGN
Sbjct:   187 AIGCICWAGFINLQAITLKSYPVELSLTAYICFLGSIESTIVALFIERGN 236

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2049847 UMAMIT12 "Usually multiple acids move in and out Transporters 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
 Identities = 151/231 (65%), Positives = 181/231 (78%)

Query:    10 RAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRP 69
             +A+PF+++++LQ G AGM I SK  LNKGMS +V  VYRHAVATIV+APFA   D+KVRP
Sbjct:    12 KARPFISMVVLQVGLAGMDILSKAVLNKGMSNYVLVVYRHAVATIVMAPFAFYFDKKVRP 71

Query:    70 KMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKV 129
             KMTL IF KI LLGLLEP IDQNL+Y GMKYTTATF TAM NVLPA  F++A+I  LE+V
Sbjct:    72 KMTLMIFFKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAITFVLAYIFGLERV 131

Query:   130 NFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQESTSNSSVQSPIKGALM 189
               R   S  KV GT+ TVGGAM MTL+KGPVLDL WT       +T+ + + S IKGA++
Sbjct:   132 KLRCIRSTGKVVGTLATVGGAMIMTLVKGPVLDLFWTK-GVSAHNTAGTDIHSAIKGAVL 190

Query:   190 ITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLERGN 240
             +TIGCFS+A FM+LQAITL++YP ELSLTA ICLMGTIEGT VAL +E+GN
Sbjct:   191 VTIGCFSYACFMILQAITLRTYPAELSLTAWICLMGTIEGTAVALVMEKGN 241

GO:0005737 "cytoplasm" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2173189 UMAMIT15 "Usually multiple acids move in and out Transporters 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 119/238 (50%), Positives = 166/238 (69%)

Query:    10 RAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRP 69
             RA+PF+A++ +Q  YA MSI +K ALNKGMSPHV   YR AVA+ ++ PFALIL+R  RP
Sbjct:     5 RARPFIAIVFIQCLYALMSIVAKLALNKGMSPHVLVAYRMAVASALITPFALILERNTRP 64

Query:    70 KMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKV 129
             K+T  I ++I +L L EP ++QNL+Y+GMK TTATFT+A+ N LPA  F+MA + +LEKV
Sbjct:    65 KLTFKILLQIAILSLFEPVVEQNLYYSGMKLTTATFTSALCNALPAMTFIMACVFKLEKV 124

Query:   130 NFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNH----NYHQESTSNSSVQSPIK 185
                + HS AK+ GT+V +GGAM MT +KG V++LPWT++    N H  +          +
Sbjct:   125 TIERRHSQAKLVGTMVAIGGAMLMTFVKGNVIELPWTSNSRGLNGHTHAMRIPKQADIAR 184

Query:   186 GALMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLERGNAAV 243
             G++M+   CFSW+ +++LQA  L  Y  ELSLTAL+C+MG +E T++ L  ER N +V
Sbjct:   185 GSIMLVASCFSWSCYIILQAKILAQYKAELSLTALMCIMGMLEATVMGLIWERKNMSV 242

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2049837 UMAMIT13 "Usually multiple acids move in and out Transporters 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
 Identities = 94/157 (59%), Positives = 114/157 (72%)

Query:    87 PTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVT 146
             P I QNLF  GMKYTTATF  A+ N LPA  F++A I RLE V F+   S AKV GT+ T
Sbjct:    62 PVIAQNLFNLGMKYTTATFAIALYNTLPAVTFILALIFRLESVKFQSIRSAAKVVGTVTT 121

Query:   147 VGGAMFMTLIKGPVLDLPWTNHNYHQESTSNSSVQSPIKGALMITIGCFSWAGFMVLQAI 206
             VGG M MTL+KGP LDL WT     Q +T  + + S IKGA+++TIGCFS+A FM+LQAI
Sbjct:   122 VGGIMVMTLVKGPALDLFWTKGPSAQ-NTVGTDIHSSIKGAVLVTIGCFSYACFMILQAI 180

Query:   207 TLKSYPTELSLTALICLMGTIEGTIVALFLERGNAAV 243
             TLK+YP ELSL   ICL+GTIEG +VAL +E+GN +V
Sbjct:   181 TLKTYPAELSLATWICLIGTIEGVVVALVMEKGNPSV 217

GO:0016020 "membrane" evidence=IEA

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2132447 UMAMIT20 "Usually multiple acids move in and out Transporters 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 121/241 (50%), Positives = 171/241 (70%)

Query:     1 MESFARFYIRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFA 60
             ME  +    + +P+L +I LQFG AG  I     LN+G + +V  VYR+ VA +V+APFA
Sbjct:     1 MEGVSATMHKLRPYLLMIFLQFGAAGTYIVIMATLNQGQNRYVVIVYRNLVAALVLAPFA 60

Query:    61 LILDRKVRPKMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLM 120
             LI +RKVRPKMTLS+  KI+ LG LEP +DQ   Y GM  T+AT+T+A+ N+LP+  F++
Sbjct:    61 LIFERKVRPKMTLSVLWKIMALGFLEPVLDQGFGYLGMNMTSATYTSAIMNILPSVTFII 120

Query:   121 AWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQES--TSNS 178
             AWI+R+EKVN  +  S AK+ GT+V +GGA+ MTL KGP++ LPW+N N  Q++  T+NS
Sbjct:   121 AWILRMEKVNIAEVRSKAKIIGTLVGLGGALVMTLYKGPLIPLPWSNPNMDQQNGHTNNS 180

Query:   179 SVQSP-IKGALMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLE 237
                +  + G L+I +GC +W+GF VLQ+IT+K+YP +LSL+ALICL G ++   VAL +E
Sbjct:   181 QDHNNWVVGTLLILLGCVAWSGFYVLQSITIKTYPADLSLSALICLAGAVQSFAVALVVE 240

Query:   238 R 238
             R
Sbjct:   241 R 241

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2194864 SIAR1 "Siliques Are Red 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 123/234 (52%), Positives = 162/234 (69%)

Query:    10 RAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRP 69
             + KP LA+I LQFGYAGM I +  +   GM   V A YRH VAT+V+APFAL+ +RK+RP
Sbjct:     8 KIKPILAIISLQFGYAGMYIITMVSFKHGMDHWVLATYRHVVATVVMAPFALMFERKIRP 67

Query:    70 KMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKV 129
             KMTL+IF ++L LG+LEP +DQNL+Y G+K T+A++T+A  N LPA  F++A I RLE V
Sbjct:    68 KMTLAIFWRLLALGILEPLMDQNLYYIGLKNTSASYTSAFTNALPAVTFILALIFRLETV 127

Query:   130 NFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHN-YHQESTSNSSVQSPIKGAL 188
             NFRK HS AKV GT++TVGGAM MTL KGP +++    HN +H  S+S  + Q  + G +
Sbjct:   128 NFRKVHSVAKVVGTVITVGGAMIMTLYKGPAIEIVKAAHNSFHGGSSSTPTGQHWVLGTI 187

Query:   189 MITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLERGNAA 242
              I     +WA F +LQ+ TLK YP ELSL  LIC +GTI   I +L + R  +A
Sbjct:   188 AIMGSISTWAAFFILQSYTLKVYPAELSLVTLICGIGTILNAIASLIMVRDPSA 241

GO:0005739 "mitochondrion" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0006865 "amino acid transport" evidence=IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IDA

GO:0032973 "amino acid export" evidence=IDA

GO:0034639 "L-amino acid efflux transmembrane transporter activity" evidence=IDA

GO:0043090 "amino acid import" evidence=IDA

GO:0080144 "amino acid homeostasis" evidence=IMP

TAIR|locus:2201148 UMAMIT19 "Usually multiple acids move in and out Transporters 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 128/241 (53%), Positives = 164/241 (68%)

Query:    12 KPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKM 71
             KP+LA+I +QFGYAGM I +  +L  GM+ +V AVYRHA+AT V+APFAL  +RK+RPKM
Sbjct:    10 KPYLAMISMQFGYAGMYIITMVSLKHGMNHYVLAVYRHAIATAVIAPFALFHERKIRPKM 69

Query:    72 TLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNF 131
             T  IF++I LLG +EP +DQNL+Y GM YT+ATF +A ANVLPA  F++A I RLE VNF
Sbjct:    70 TFRIFLQIALLGFIEPVLDQNLYYVGMTYTSATFASATANVLPAITFVLAIIFRLESVNF 129

Query:   132 RKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHN----------YHQESTSNSSVQ 181
             +K  S AKV GT++TV GA+ MTL KGP++D                  H  + + +  +
Sbjct:   130 KKVRSIAKVVGTVITVSGALLMTLYKGPIVDFIRFGGGGGGGSDGAGGSHGGAGAAAMDK 189

Query:   182 SPIKGALMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLERGNA 241
               I G LM+    F WAGF +LQ+ TLK YP ELSLT LICLMGT+EGT V+L   R  +
Sbjct:   190 HWIPGTLMLLGRTFGWAGFFILQSFTLKQYPAELSLTTLICLMGTLEGTAVSLVTVRDLS 249

Query:   242 A 242
             A
Sbjct:   250 A 250

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2132457 UMAMIT17 "Usually multiple acids move in and out Transporters 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 124/237 (52%), Positives = 161/237 (67%)

Query:    10 RAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRP 69
             + KP +A+I LQFGYAGM I +  +   GM+  + A YRH VATIV+APFALIL+RK+RP
Sbjct:     8 KLKPIIAIISLQFGYAGMYIITMVSFKHGMNHWILATYRHVVATIVIAPFALILERKIRP 67

Query:    70 KMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKV 129
             KMT  +F++IL LG LEP +DQNL+Y GMK T+AT+++A  N LPA  F+MA I R+E V
Sbjct:    68 KMTWPLFLRILALGFLEPLLDQNLYYIGMKATSATYSSAFVNALPAITFIMAVIFRIETV 127

Query:   130 NFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHN-YHQESTSNSSV---QSPIK 185
             N +K  S AKV GT +TVGGAM MTL KGP ++L  T H+  H  S+  SS    Q+ + 
Sbjct:   128 NLKKTRSLAKVIGTAITVGGAMVMTLYKGPAIELFKTAHSSLHGGSSGTSSETTDQNWVT 187

Query:   186 GALMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLERGNAA 242
             G L +     +WAGF +LQ+ TLK YP ELSL   IC MGT+  TI +L + R  +A
Sbjct:   188 GTLAVMGSITTWAGFFILQSFTLKKYPAELSLVMWICAMGTVLNTIASLIMVRDVSA 244

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2169414 UMAMIT9 "Usually multiple acids move in and out Transporters 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 117/251 (46%), Positives = 169/251 (67%)

Query:     1 MESFARFYIRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFA 60
             + S   F   +KP+ A+I LQFGYAGM+I +K +LN GMS +V  VYRHA+AT V+APFA
Sbjct:     6 ISSCESFLTSSKPYFAMISLQFGYAGMNIITKISLNTGMSHYVLVVYRHAIATAVIAPFA 65

Query:    61 LILDRKVRPKMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLM 120
                +RK +PK+T SIF+++ +LGLL P IDQN +Y G+KYT+ TF+ AM+N+LPA  F++
Sbjct:    66 FFFERKAQPKITFSIFMQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFIL 125

Query:   121 AWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQES-----T 175
             A + R+E ++ +K    AK+ GT+VTV GAM MT+ KGP+++L WT + + Q+S     T
Sbjct:   126 AVLFRMEMLDLKKLWCQAKIAGTVVTVAGAMLMTIYKGPIVELFWTKYMHIQDSSHANTT 185

Query:   176 S--NSSVQSP-IKGALMITIGCFSWAGFMVLQAITLKSYPT-ELSLTALICLMGTIEGTI 231
             S  NSS     +KG++++     +WA   VLQA  LK+Y   +LSLT LIC +GT++   
Sbjct:   186 SSKNSSSDKEFLKGSILLIFATLAWASLFVLQAKILKTYAKHQLSLTTLICFIGTLQAVA 245

Query:   232 VALFLERGNAA 242
             V   +E   +A
Sbjct:   246 VTFVMEHNPSA 256

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2102629 UMAMIT10 "Usually multiple acids move in and out Transporters 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 106/227 (46%), Positives = 149/227 (65%)

Query:    11 AKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPK 70
             AKP+ A++ LQFGYAGM++ +K  L++GMS +V   YR+A AT  +APFAL+ +RKVRPK
Sbjct:     9 AKPYFAMVCLQFGYAGMNLVTKVVLDRGMSHYVLVAYRNAFATAAIAPFALLSERKVRPK 68

Query:    71 MTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVN 130
             MT  IF++I +L LL P IDQNL+Y G+K T+ TF  A+ N++PA  F+++ I R+EKV 
Sbjct:    69 MTFPIFMQIFVLALLGPLIDQNLYYAGLKLTSPTFAGAVTNIVPALTFIISIICRMEKVE 128

Query:   131 FRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQESTSNSSVQSPIKGALMI 190
              RK    AKV GT+V V GAM M L K P++    ++   H  S +       +K  + +
Sbjct:   129 MRKVRFQAKVVGTLVIVVGAMLMILFKIPLITFLRSHLTGHALSPAGEDY---LKATVFL 185

Query:   191 TIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLE 237
              I  FSWA F VLQA TLK Y + LSL+ ++C MGT++ T +   +E
Sbjct:   186 LIASFSWASFFVLQAATLKRYSSHLSLSTMVCFMGTLQSTALTFVME 232

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O80638	WTR14_ARATH	No assigned EC number	0.7198	0.9506	0.6176	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0049017501 hypothetical protein (380 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	243
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	2e-26
pfam00892	126	pfam00892, EamA, EamA-like transporter family	3e-07
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	0.001

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score =  105 bits (262), Expect = 2e-26
 Identities = 74/249 (29%), Positives = 133/249 (53%), Gaps = 8/249 (3%)

Query: 1   MESFARFYIRAKPFL-AVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPF 59
           M      + R   FL A++  +    G+S   K A +KG++ + F  Y + +A++++ P 
Sbjct: 1   MAGTVSLWRREAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPS 60

Query: 60  ALILDR-KVRPKMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAF 118
               +R +  P +++SI  KI LLG L  ++     Y G++Y+  T  +A++N+ PA  F
Sbjct: 61  LFFTNRSRSLPPLSVSILSKIGLLGFLG-SMYVITGYIGIEYSNPTLASAISNITPALTF 119

Query: 119 LMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDL----PWTNHNYHQES 174
           ++A I R+EKV+F++  S AKV GTI+++ GA+ +    GP + +    P+ N       
Sbjct: 120 ILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPP 179

Query: 175 TSNSSVQSPIKGALMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVAL 234
            S+S+    I GAL+   G F    F +LQA  +  YP   +++ L  +  +I  +++ L
Sbjct: 180 LSSSNSDWLIGGALLTIQGIFVSVSF-ILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGL 238

Query: 235 FLERGNAAV 243
            +E+ N +V
Sbjct: 239 VVEKNNPSV 247

Length = 358

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 32/134 (23%), Positives = 65/134 (48%), Gaps = 8/134 (5%)

Query: 22  FGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILL 81
             +A   +FSK  L + +SP  F  YR  +A I+     L L RK    ++L   + +L 
Sbjct: 1   LSWALYFVFSKKLLER-ISPLTFTAYRFLIAGIL-LILLLFLLRKPFALLSLKAILALLY 58

Query: 82  LGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVF 141
           LGL    +   L++  +KY +A+  + + ++ P F  +++ ++  EK+         ++ 
Sbjct: 59  LGLFGTALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLT------LKQLL 112

Query: 142 GTIVTVGGAMFMTL 155
           G ++ + G + + L
Sbjct: 113 GIVLILLGVLLILL 126

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 41/219 (18%), Positives = 80/219 (36%), Gaps = 26/219 (11%)

Query: 9   IRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVR 68
                 LA++L    +    I  K A+         A  R  +A +++ P  L+      
Sbjct: 4   ALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL--EPRG 61

Query: 69  PKMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEK 128
            +  L  ++ +LLL LL   +   L +  +KYT+A+  + +  +LP F  L+A ++ L  
Sbjct: 62  LRPALRPWLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLL-- 119

Query: 129 VNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQESTSNSSVQSPIKGAL 188
               +  S  ++ G ++ + G + + L                            + G L
Sbjct: 120 ---GERLSLLQILGILLALAGVLLILL-------------------GGGGGGILSLLGLL 157

Query: 189 MITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTI 227
           +       WA +  L     +  P  L+L   + L   +
Sbjct: 158 LALAAALLWALYTALVKRLSRLGPVTLALLLQLLLALLL 196

Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	243
PLN00411	358	nodulin MtN21 family protein; Provisional	99.95
PRK11272	292	putative DMT superfamily transporter inner membran	99.89
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.87
PRK15430	296	putative chloramphenical resistance permease RarD;	99.86
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.85
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.85
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.85
PRK11689	295	aromatic amino acid exporter; Provisional	99.85
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.82
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.79
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.75
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.74
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.64
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.63
COG2510	140	Predicted membrane protein [Function unknown]	99.59
COG2962	293	RarD Predicted permeases [General function predict	99.51
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.5
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.48
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.47
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.43
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.4
PRK11272	292	putative DMT superfamily transporter inner membran	99.39
PLN00411	358	nodulin MtN21 family protein; Provisional	99.31
KOG2765	416	consensus Predicted membrane protein [Function unk	99.28
PRK11689	295	aromatic amino acid exporter; Provisional	99.28
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.26
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.21
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.18
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.15
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.1
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.02
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.93
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.92
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.91
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.9
PRK15430	296	putative chloramphenical resistance permease RarD;	98.89
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.87
KOG2766	336	consensus Predicted membrane protein [Function unk	98.75
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.7
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	98.67
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	98.58
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.56
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.56
KOG1443	349	consensus Predicted integral membrane protein [Fun	98.46
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.4
KOG3912	372	consensus Predicted integral membrane protein [Gen	98.26
PRK13499	345	rhamnose-proton symporter; Provisional	98.08
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.07
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.06
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.96
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.92
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	97.84
COG2962	293	RarD Predicted permeases [General function predict	97.74
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	97.66
KOG4510	346	consensus Permease of the drug/metabolite transpor	97.63
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.6
KOG2765	416	consensus Predicted membrane protein [Function unk	97.59
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.38
KOG1581	327	consensus UDP-galactose transporter related protei	97.37
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	97.3
PRK13499	345	rhamnose-proton symporter; Provisional	97.25
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.22
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.19
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.18
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	97.03
COG2076	106	EmrE Membrane transporters of cations and cationic	97.03
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	96.97
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.96
PRK11431	105	multidrug efflux system protein; Provisional	96.91
KOG1580	337	consensus UDP-galactose transporter related protei	96.74
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.62
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	96.47
KOG2922	335	consensus Uncharacterized conserved protein [Funct	96.46
KOG1581	327	consensus UDP-galactose transporter related protei	96.44
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	96.39
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	96.27
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	95.98
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	95.82
KOG1580	337	consensus UDP-galactose transporter related protei	95.62
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	95.36
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	94.95
KOG1443	349	consensus Predicted integral membrane protein [Fun	94.79
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	94.25
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	94.05
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	93.75
KOG1582	367	consensus UDP-galactose transporter related protei	92.71
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	89.88
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	89.58
KOG4831	125	consensus Unnamed protein [Function unknown]	88.29
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	88.23
KOG1582	367	consensus UDP-galactose transporter related protei	87.39
COG2510	140	Predicted membrane protein [Function unknown]	85.12
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	82.61

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.95  E-value=2.8e-25  Score=194.34  Aligned_cols=229  Identities=29%  Similarity=0.440  Sum_probs=180.4

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHHHH
Q 045242            9 IRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRK-VRPKMTLSIFVKILLLGLLEP   87 (243)
Q Consensus         9 ~~~~~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~   87 (243)
                      ++.+.++.++...+.++...++.|.+++.+++|..+.++|+.+++++++|+++.++|+ +.++.+++++..+.+.|+++ 
T Consensus        10 ~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g-   88 (358)
T PLN00411         10 REAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG-   88 (358)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH-
Confidence            3667999999999999999999999999999999999999999999999988765442 23444678888999999998 


Q ss_pred             HHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHhCCccCCCCCC
Q 045242           88 TIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTN  167 (243)
Q Consensus        88 ~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~  167 (243)
                      ..++.+++.|++++++++++++.++.|+++++++++++.|+++.++|.+++|++|++++++|+.++...+++.....+++
T Consensus        89 ~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~  168 (358)
T PLN00411         89 SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSP  168 (358)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccc
Confidence            77888999999999999999999999999999999996666666666666679999999999999864444211100000


Q ss_pred             --CccCcCCC-CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhcc
Q 045242          168 --HNYHQEST-SNSSVQSPIKGALMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLER  238 (243)
Q Consensus       168 --~~~~~~~~-~~~~~~~~~~G~~~~llaal~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (243)
                        -|..+... +.....+...|+.++++++++||+|++.+|+..+++|++...++|++.++++...+.....++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~  242 (358)
T PLN00411        169 PYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEK  242 (358)
T ss_pred             ccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHcc
Confidence              00000000 011123346799999999999999999999998888755677888998888888877777654

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.89  E-value=9.2e-21  Score=162.25  Aligned_cols=197  Identities=17%  Similarity=0.207  Sum_probs=160.5

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHH
Q 045242            8 YIRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEP   87 (243)
Q Consensus         8 ~~~~~~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   87 (243)
                      .+...-....+...++||.++++.|... ++.||.+++++|+.+++++++++...++ ++  ..+++++......|.++.
T Consensus         4 ~~~~~~~~~~~~~~~iWg~~~~~~K~~~-~~~~p~~~~~~R~~~a~l~ll~~~~~~~-~~--~~~~~~~~~~~~~g~~~~   79 (292)
T PRK11272          4 RQLLPLFGALFALYIIWGSTYLVIRIGV-ESWPPLMMAGVRFLIAGILLLAFLLLRG-HP--LPTLRQWLNAALIGLLLL   79 (292)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHhC-CC--CCcHHHHHHHHHHHHHHH
Confidence            3444566778899999999999999985 4799999999999999999988765432 22  235677888888898887


Q ss_pred             HHHHHHHHHhh-cccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHhCCccCCCCC
Q 045242           88 TIDQNLFYTGM-KYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWT  166 (243)
Q Consensus        88 ~~~~~~~~~~l-~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~  166 (243)
                      ..++.+++.+. ++++++.++++.++.|+++.+++.+ +|||+++++      +.|.+++++|+.++. .++        
T Consensus        80 ~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~------~~~~~la~~Gv~ll~-~~~--------  143 (292)
T PRK11272         80 AVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLE------WLGIAIGLAGIVLLN-SGG--------  143 (292)
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhH------HHHHHHHHHhHHHHh-cCc--------
Confidence            78888999999 9999999999999999999999985 699999996      999999999998885 111        


Q ss_pred             CCccCcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhcc
Q 045242          167 NHNYHQESTSNSSVQSPIKGALMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLER  238 (243)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~G~~~~llaal~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (243)
                                  ..+....|++++++++++||.|.+..||..++  ++...+.+++..+++.+.+.....+.
T Consensus       144 ------------~~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (292)
T PRK11272        144 ------------NLSGNPWGAILILIASASWAFGSVWSSRLPLP--VGMMAGAAEMLAAGVVLLIASLLSGE  201 (292)
T ss_pred             ------------ccccchHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHcCC
Confidence                        01223579999999999999999999996543  34567789999999988888765543

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.87  E-value=1.4e-20  Score=158.09  Aligned_cols=182  Identities=18%  Similarity=0.209  Sum_probs=152.4

Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCh
Q 045242           24 YAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTA  103 (243)
Q Consensus        24 ~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~  103 (243)
                      ||.+++..|..+++..|+..+.+.|+..+.+++.++...  +     .+++++.+....|.++..+++.+++.|++++++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~--~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~   73 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR--R-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV   73 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--c-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            899999999987777999999999999998888876432  1     244557778888888889999999999999999


Q ss_pred             hhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHhCCccCCCCCCCccCcCCCCCCCCCcc
Q 045242          104 TFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQESTSNSSVQSP  183 (243)
Q Consensus       104 ~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (243)
                      ++++++.++.|+++++++++++|||+++++      +.|++++++|+.++. .++                    ..+.+
T Consensus        74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~------~~gi~i~~~Gv~li~-~~~--------------------~~~~~  126 (260)
T TIGR00950        74 GEAALLLYLAPLYVTLLSDLMGKERPRKLV------LLAAVLGLAGAVLLL-SDG--------------------NLSIN  126 (260)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHccCCCcHHH------HHHHHHHHHhHHhhc-cCC--------------------ccccc
Confidence            999999999999999999999999999996      999999999999985 211                    11234


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHHHHHhccC
Q 045242          184 IKGALMITIGCFSWAGFMVLQAITLKSYP-TELSLTALICLMGTIEGTIVALFLERG  239 (243)
Q Consensus       184 ~~G~~~~llaal~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (243)
                      ..|+.++++++++|+.+.+..|+..++.+ ++.....+++.++.+...+.....+++
T Consensus       127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  183 (260)
T TIGR00950       127 PAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPN  183 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            68999999999999999999999887763 234555578999999999888765543

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.86  E-value=3.1e-20  Score=159.26  Aligned_cols=187  Identities=11%  Similarity=-0.010  Sum_probs=143.1

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC--C-CCCHHHHHHHHHHHH
Q 045242            8 YIRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVR--P-KMTLSIFVKILLLGL   84 (243)
Q Consensus         8 ~~~~~~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~--~-~~~~~~~~~~~~~g~   84 (243)
                      +++.||.+++++++++||.+++..|.. . +++|.++.++|+.++.+++.++...+++++.  + ..+++++. ....+.
T Consensus         4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   80 (296)
T PRK15430          4 KQTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIF-MLAVSA   80 (296)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHH-HHHHHH
Confidence            467789999999999999999999986 4 5999999999999999888876544321111  0 11334333 344666


Q ss_pred             HHHHHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHhCCccCCC
Q 045242           85 LEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLP  164 (243)
Q Consensus        85 ~~~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~  164 (243)
                      ++.+.++.++++|++++++++++++.++.|+++.+++++++|||+++++      +.|++++++|+.++. .++      
T Consensus        81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~------~~g~~l~~~Gv~li~-~~~------  147 (296)
T PRK15430         81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQ------WLAVILAICGVLVQL-WTF------  147 (296)
T ss_pred             HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH------HHHHHHHHHHHHHHH-HHc------
Confidence            7678899999999999999999999999999999999999999999997      999999999999985 211      


Q ss_pred             CCCCccCcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHH
Q 045242          165 WTNHNYHQESTSNSSVQSPIKGALMITIGCFSWAGFMVLQAITLKSYP-TELSLTALICLMGTIEG  229 (243)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~G~~~~llaal~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~  229 (243)
                                     ++.    ..++++++++||.|.+..|+..++.. +....+.+++..+....
T Consensus       148 ---------------~~~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~  194 (296)
T PRK15430        148 ---------------GSL----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYL  194 (296)
T ss_pred             ---------------CCc----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHH
Confidence                           111    14678899999999999988643321 22344455555555443

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.85  E-value=2.6e-19  Score=153.80  Aligned_cols=189  Identities=16%  Similarity=0.231  Sum_probs=141.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 045242           14 FLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTIDQNL   93 (243)
Q Consensus        14 ~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   93 (243)
                      .++.++++++||.++++.|..++ ++||.++.++|+.++++.++++.  . ++   +.+++   .....|+......+.+
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~~~l~~~~--~-~~---~~~~~---~~~~~g~~~~~~~~~~   75 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLH-NMPPLMLAGLRFMLVAFPAIFFV--A-RP---KVPLN---LLLGYGLTISFGQFAF   75 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHh--c-CC---CCchH---HHHHHHHHHHHHHHHH
Confidence            35688899999999999999864 59999999999999887766543  1 11   11222   3444455554566667


Q ss_pred             HHHhhcc-cChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHhCCccCCCCCCCccCc
Q 045242           94 FYTGMKY-TTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQ  172 (243)
Q Consensus        94 ~~~~l~~-~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~  172 (243)
                      ++.++++ .++++++++.++.|+++.+++++++|||+++++      ++|.+++++|+.++. .++              
T Consensus        76 ~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~------~~~~~l~~~Gv~ll~-~~~--------------  134 (299)
T PRK11453         76 LFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQ------LAGIALAIFGVLVLI-EDS--------------  134 (299)
T ss_pred             HHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHH------HHHHHHHHHhHHHhc-ccc--------------
Confidence            8889988 588999999999999999999999999999996      999999999999986 111              


Q ss_pred             CCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHhc
Q 045242          173 ESTSNSSVQSPIKGALMITIGCFSWAGFMVLQAITLKSYPT--ELSLTALICLMGTIEGTIVALFLE  237 (243)
Q Consensus       173 ~~~~~~~~~~~~~G~~~~llaal~~a~~~v~~k~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  237 (243)
                          .+.......|+.++++++++|+.|.+.+|+..++.++  ......+++..+.+.........+
T Consensus       135 ----~~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (299)
T PRK11453        135 ----LNGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILD  197 (299)
T ss_pred             ----CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhc
Confidence                0111223479999999999999999999997765532  234456666666655554444333

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.85  E-value=5e-19  Score=152.19  Aligned_cols=182  Identities=16%  Similarity=0.169  Sum_probs=151.7

Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccChh
Q 045242           25 AGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTAT  104 (243)
Q Consensus        25 a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~  104 (243)
                      ....+..|.++++-.+|..+++.|+..+.+...+. +....+++++.+++++...+..|++. +.++.+.+.++++++++
T Consensus        15 ~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~s   92 (302)
T TIGR00817        15 VYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLS-WSSGLPKRLKISSALLKLLLPVAIVH-TIGHVTSNVSLSKVAVS   92 (302)
T ss_pred             HHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHH-HHhCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHH
Confidence            34446788887654679999999999988776654 21122333457888999999999997 88899999999999999


Q ss_pred             hhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHhCCccCCCCCCCccCcCCCCCCCCCcch
Q 045242          105 FTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQESTSNSSVQSPI  184 (243)
Q Consensus       105 ~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (243)
                      .++++.++.|+++++++++++|||+++++      +.|++++++|+.+..  .                    .+.+...
T Consensus        93 ~~~li~~~~Pv~~~ll~~~~~~e~~~~~~------~~~l~l~~~Gv~l~~--~--------------------~~~~~~~  144 (302)
T TIGR00817        93 FTHTIKAMEPFFSVVLSAFFLGQEFPSTL------WLSLLPIVGGVALAS--D--------------------TELSFNW  144 (302)
T ss_pred             HHHHHHhcchHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHhhhc--C--------------------CcccccH
Confidence            99999999999999999999999999996      999999999998653  1                    1112345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHHHHHHHHhc
Q 045242          185 KGALMITIGCFSWAGFMVLQAITLK--SYPTELSLTALICLMGTIEGTIVALFLE  237 (243)
Q Consensus       185 ~G~~~~llaal~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (243)
                      .|++++++|+++|+.|.+..||..+  +. |+...+.|++..+++.++|.....|
T Consensus       145 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~  198 (302)
T TIGR00817       145 AGFLSAMISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITE  198 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHc
Confidence            7999999999999999999999887  56 6899999999999999999987665

specificities overlap.

>TIGR00688 rarD rarD protein

Probab=99.85  E-value=1.5e-19  Score=151.82  Aligned_cols=163  Identities=14%  Similarity=0.167  Sum_probs=130.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCCHHH-HHHHHHHHHH
Q 045242           12 KPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKV-----RPKMTLSI-FVKILLLGLL   85 (243)
Q Consensus        12 ~~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~-----~~~~~~~~-~~~~~~~g~~   85 (243)
                      ||++++++++++||.++++.|.. . ++||.++.++|++++++++.++...+++++     .++.++++ +......|++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~~-~-~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKLL-K-PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHh-c-cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            58899999999999999999985 4 499999999999999988877654433211     11122222 4445666666


Q ss_pred             HHHHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHhCCccCCCC
Q 045242           86 EPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPW  165 (243)
Q Consensus        86 ~~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~  165 (243)
                      . ..++.+++++++++++++++++.++.|+++++++++++|||+++++      +.+++++++|+.++...++       
T Consensus        80 ~-~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~------~l~~~~~~~Gv~li~~~~~-------  145 (256)
T TIGR00688        80 I-GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQ------FIAVIIATLGVISNIVLKG-------  145 (256)
T ss_pred             H-HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHcC-------
Confidence            4 8999999999999999999999999999999999999999999996      9999999999998852111       


Q ss_pred             CCCccCcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045242          166 TNHNYHQESTSNSSVQSPIKGALMITIGCFSWAGFMVLQAITLK  209 (243)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~G~~~~llaal~~a~~~v~~k~~~~  209 (243)
                                     +..    .++++++++|+.|.+..|+..+
T Consensus       146 ---------------~~~----~~~l~aa~~~a~~~i~~~~~~~  170 (256)
T TIGR00688       146 ---------------SLP----WEALVLAFSFTAYGLIRKALKN  170 (256)
T ss_pred             ---------------Cch----HHHHHHHHHHHHHHHHHhhcCC
Confidence                           111    3578899999999999998544

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.85  E-value=1.5e-19  Score=154.98  Aligned_cols=182  Identities=14%  Similarity=0.113  Sum_probs=135.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 045242           10 RAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTI   89 (243)
Q Consensus        10 ~~~~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   89 (243)
                      +.+++++++.++++||.+++..|..+ +++||..+.++|+.+++++++++.   .+++.++.+    .+....+.++...
T Consensus         2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~-~~~~P~~~~~~R~~~a~l~l~~~~---~~~~~~~~~----~~~~~~~~l~~~~   73 (295)
T PRK11689          2 SQKATLIGLIAILLWSTMVGLIRGVS-ESLGPVGGAAMIYSVSGLLLLLTV---GFPRLRQFP----KRYLLAGGLLFVS   73 (295)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHH-ccCChHHHHHHHHHHHHHHHHHHc---ccccccccc----HHHHHHHhHHHHH
Confidence            46778899999999999999999995 469999999999999999988753   112111112    2233445555577


Q ss_pred             HHHHHHHhhc----ccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHhCCccCCCC
Q 045242           90 DQNLFYTGMK----YTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPW  165 (243)
Q Consensus        90 ~~~~~~~~l~----~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~  165 (243)
                      ++.+++.+++    ..++++++++.++.|+++.+++++++|||+++++      +.|++++++|+.++. .+++.     
T Consensus        74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~------~~g~~l~~~Gv~li~-~~~~~-----  141 (295)
T PRK11689         74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLL------IPGLLLALAGVAWVL-GGDNG-----  141 (295)
T ss_pred             HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHH------HHHHHHHHHhHhhee-cCCcc-----
Confidence            7777777775    4577888999999999999999999999999996      999999999999986 22100     


Q ss_pred             CCCccCcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHH
Q 045242          166 TNHNYHQESTSNSSVQSPIKGALMITIGCFSWAGFMVLQAITLKSYPTELSL  217 (243)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~G~~~~llaal~~a~~~v~~k~~~~~~~~~~~~  217 (243)
                          ....+ ......+...|++++++|++|||.|+++.||..++. ++...
T Consensus       142 ----~~~~~-~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~-~~~~~  187 (295)
T PRK11689        142 ----LSLAE-LINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK-NGITL  187 (295)
T ss_pred             ----chhhh-hhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC-CchhH
Confidence                00000 000111235699999999999999999999987665 45543

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.82  E-value=2.6e-18  Score=147.20  Aligned_cols=194  Identities=13%  Similarity=0.113  Sum_probs=151.4

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Q 045242            5 ARFYIRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGL   84 (243)
Q Consensus         5 ~~~~~~~~~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~   84 (243)
                      -++.++.+++.+++++.++|+.++.+.|..+++ .||..+.++|+.+++++++++...  ++  .+.+++++......|+
T Consensus         5 ~~~~~~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~~--~~--~~~~~~~~~~~~~~g~   79 (293)
T PRK10532          5 LRKLPVWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFKP--WR--LRFAKEQRLPLLFYGV   79 (293)
T ss_pred             ccccccchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhH--Hh--ccCCHHHHHHHHHHHH
Confidence            344566889999999999999999999999654 999999999999999998876422  12  1345677778888888


Q ss_pred             HHHHHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHhCCccCCC
Q 045242           85 LEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLP  164 (243)
Q Consensus        85 ~~~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~  164 (243)
                      +. +..+.+++++++++|++.++.+.++.|+++.+++.    |++.        +..++.++++|+.++. ..+      
T Consensus        80 ~~-~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--------~~~~~~i~~~Gv~li~-~~~------  139 (293)
T PRK10532         80 SL-GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--------DFVWVVLAVLGLWFLL-PLG------  139 (293)
T ss_pred             HH-HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--------HHHHHHHHHHHHheee-ecC------
Confidence            75 77888999999999999999999999999988763    4432        2556778899998874 211      


Q ss_pred             CCCCccCcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhc
Q 045242          165 WTNHNYHQESTSNSSVQSPIKGALMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLE  237 (243)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~G~~~~llaal~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (243)
                                  .+.+.....|+++.++++++||.|.+..|+..++.+ +... .++...+++.+.|.....+
T Consensus       140 ------------~~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~  198 (293)
T PRK10532        140 ------------QDVSHVDLTGAALALGAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQA  198 (293)
T ss_pred             ------------CCcccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHcc
Confidence                        011123457999999999999999999999877764 6555 5677778888888776544

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.79  E-value=5.3e-17  Score=142.31  Aligned_cols=198  Identities=16%  Similarity=0.153  Sum_probs=154.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHHH
Q 045242           10 RAKPFLAVILLQFGYAGMSIFSKFALNKGMS-PHVFAVYRHAVATIVVAPFALILDRKVRPKM--TLSIFVKILLLGLLE   86 (243)
Q Consensus        10 ~~~~~~~~~~a~~~~a~~~~~~k~~~~~~~~-~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~   86 (243)
                      +.+...+++..-.+-.......|.+++. +| |..++.+|++++.++...+.. ...+++++.  .++++..++..|+++
T Consensus        47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~llp~gl~~  124 (350)
T PTZ00343         47 KWKLALLFLTWYALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWA-TGFRKIPRIKSLKLFLKNFLPQGLCH  124 (350)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            4556666666666666777888888754 89 999999999999877654432 212222233  345688899999998


Q ss_pred             HHHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHhCCccCCCCC
Q 045242           87 PTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWT  166 (243)
Q Consensus        87 ~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~  166 (243)
                      .. .+...+.|+++++++.++++.++.|+++++++++++|||+++++      +.++++++.|+.+... +         
T Consensus       125 ~~-~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~------~l~l~l~v~Gv~l~~~-~---------  187 (350)
T PTZ00343        125 LF-VHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYA------YLSLIPIVGGVALASV-K---------  187 (350)
T ss_pred             HH-HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHH------HHHHHHHHHHHHheec-c---------
Confidence            54 46667799999999999999999999999999999999999996      9999999999999861 1         


Q ss_pred             CCccCcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCC------chhHHHHHHHHHHHHHHHHHHHHhcc
Q 045242          167 NHNYHQESTSNSSVQSPIKGALMITIGCFSWAGFMVLQAITLKSYP------TELSLTALICLMGTIEGTIVALFLER  238 (243)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~G~~~~llaal~~a~~~v~~k~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (243)
                                  +.+....|++++++|+++|+.+++..|+..++.+      ++.....++..++++.++|+..+.|.
T Consensus       188 ------------~~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~  253 (350)
T PTZ00343        188 ------------ELHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEG  253 (350)
T ss_pred             ------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                        1122467999999999999999999999887531      24456666788999999999876543

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.75  E-value=4.6e-16  Score=134.18  Aligned_cols=211  Identities=21%  Similarity=0.308  Sum_probs=165.3

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHH
Q 045242            7 FYIRAKPFLAVILLQFGYAGMSIFSKFALNKGMS-PHVFAVYRHAVATIVVAPFALILDRK-VRPKMTLSIFVKILLLGL   84 (243)
Q Consensus         7 ~~~~~~~~~~~~~a~~~~a~~~~~~k~~~~~~~~-~~~~~~~r~~~~~i~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~   84 (243)
                      .++-++..++.-+.+++-+.+.+.....-+++.+ |..-+++-+..-.++..+....+.++ +..+..++.|++.+++++
T Consensus         8 ~~~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~   87 (334)
T PF06027_consen    8 TRRFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLAL   87 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHH
Confidence            3455667777777888888888888877555554 65566666655555555654443222 222233456888899999


Q ss_pred             HHHHHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHhCCccCCC
Q 045242           85 LEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLP  164 (243)
Q Consensus        85 ~~~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~  164 (243)
                      +. ..++.+...|++|++.+.+.++..+.-+++++++++++|||+++.+      +.|+++++.|+.++...+..     
T Consensus        88 ~D-v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~------~~gv~i~i~Gv~lv~~sD~~-----  155 (334)
T PF06027_consen   88 LD-VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFH------ILGVLICIAGVVLVVVSDVL-----  155 (334)
T ss_pred             HH-HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHH------HHHHHHHHhhhhheeeeccc-----
Confidence            98 8999999999999999999999999999999999999999999997      99999999999998643321     


Q ss_pred             CCCCccCcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhcc
Q 045242          165 WTNHNYHQESTSNSSVQSPIKGALMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLER  238 (243)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~G~~~~llaal~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (243)
                             .+ +++..+.+...||+++++|+++||.+++..++..++.+ ......+..++|.++..+...+.|.
T Consensus       156 -------~~-~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~  220 (334)
T PF06027_consen  156 -------SG-SDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILER  220 (334)
T ss_pred             -------cc-ccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheeh
Confidence                   00 01223567799999999999999999999999999884 7889999999999999988887765

Some of the sequences in this family are annotated as putative membrane proteins.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.74  E-value=3.1e-16  Score=133.58  Aligned_cols=167  Identities=11%  Similarity=0.099  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 045242           14 FLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILD-RKVRPKMTLSIFVKILLLGLLEPTIDQN   92 (243)
Q Consensus        14 ~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~   92 (243)
                      ..+.+.++++|+...+..|... ++.++  ..+++...+.+++.|+...+. ++.++..+++ ++.....+.++...++.
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~-~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   78 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHA-DKEPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPAT-FWLLLAISAVANMVYFL   78 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcC-CchhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchh-hHHHHHHHHHHHHHHHH
Confidence            5678899999999999999663 33444  347777788888888766532 2223333334 44455556666689999


Q ss_pred             HHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHhCCccCCCCCCCccCc
Q 045242           93 LFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQ  172 (243)
Q Consensus        93 ~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~  172 (243)
                      ++++++++.++++++.+.++.|+++++++++++|||+++++      +.|+.+++.|+.++. .++              
T Consensus        79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~------~~g~~~~~~Gv~ll~-~~~--------------  137 (281)
T TIGR03340        79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLA------WLGILIITLGLLVLG-LSR--------------  137 (281)
T ss_pred             HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHH------HHHHHHHHHHHHHHh-ccc--------------
Confidence            99999999999999999999999999999999999999997      999999999999885 211              


Q ss_pred             CCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 045242          173 ESTSNSSVQSPIKGALMITIGCFSWAGFMVLQAITLKSY  211 (243)
Q Consensus       173 ~~~~~~~~~~~~~G~~~~llaal~~a~~~v~~k~~~~~~  211 (243)
                          .  ...+..|+.++++++++|+.|.+..|+..++.
T Consensus       138 ----~--~~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~  170 (281)
T TIGR03340       138 ----F--AQHRRKAYAWALAAALGTAIYSLSDKAAALGV  170 (281)
T ss_pred             ----c--cccchhHHHHHHHHHHHHHHhhhhccccccch
Confidence                0  11224688899999999999999988765444

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.64  E-value=1.6e-15  Score=112.82  Aligned_cols=125  Identities=28%  Similarity=0.544  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 045242           22 FGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTIDQNLFYTGMKYT  101 (243)
Q Consensus        22 ~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~  101 (243)
                      ++||.+.++.|...+ +.||....++|+..+++ ++++....++++..+.+++++......+.++...++.+++++++++
T Consensus         1 ~~~a~~~~~~k~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   78 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLK-KISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI   78 (126)
T ss_pred             ceeeeHHHHHHHHhc-cCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence            469999999999954 59999999999999998 6666666555444567778888899999997799999999999999


Q ss_pred             ChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHH
Q 045242          102 TATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMT  154 (243)
Q Consensus       102 ~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~  154 (243)
                      +++.++.+.+++|+++.+++++++||++++++      +.|+++++.|+.++.
T Consensus        79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~------~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   79 SASIVSILQYLSPVFAAILGWLFLGERPSWRQ------IIGIILIIIGVVLIS  125 (126)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999996      999999999999874

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.63  E-value=1.1e-13  Score=117.33  Aligned_cols=186  Identities=20%  Similarity=0.334  Sum_probs=140.8

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHH
Q 045242            9 IRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPT   88 (243)
Q Consensus         9 ~~~~~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   88 (243)
                      +...+....++..+.|+......|....+..++....+.|...+.++..+.... ++....+..++ +.+....+.++..
T Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~   81 (292)
T COG0697           4 ALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-EPRGLRPALRP-WLLLLLLALLGLA   81 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hcccccccccc-hHHHHHHHHHHHH
Confidence            455677888888899999999999985433677777777999998885543322 11111112222 4566777777779


Q ss_pred             HHHHHHHHhhcccChhhhhhhccchhHHHHHHHH-HHhhccccccccccccchhHHHHHHHHHHHHHHHhCCccCCCCCC
Q 045242           89 IDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAW-IIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTN  167 (243)
Q Consensus        89 ~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~-~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~  167 (243)
                      .+..+++.++++++++.++.+.++.|+++.++++ ++++||+++++      +.+.++++.|+.++. .++.        
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~------~~~~~~~~~Gv~lv~-~~~~--------  146 (292)
T COG0697          82 LPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQ------ILGILLALAGVLLIL-LGGG--------  146 (292)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHH------HHHHHHHHHhHHhee-cCCC--------
Confidence            9999999999999999999999999999999997 77799999996      999999999999996 2210        


Q ss_pred             CccCcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHH-HHHH
Q 045242          168 HNYHQESTSNSSVQSPIKGALMITIGCFSWAGFMVLQAITLKSYPTELSLTA-LICL  223 (243)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~G~~~~llaal~~a~~~v~~k~~~~~~~~~~~~~~-~~~~  223 (243)
                               ..... ...|+.+.++++++|+.+.+..|+.. +. ++..... ++..
T Consensus       147 ---------~~~~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~  191 (292)
T COG0697         147 ---------GGGIL-SLLGLLLALAAALLWALYTALVKRLS-RL-GPVTLALLLQLL  191 (292)
T ss_pred             ---------cchhH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CC-ChHHHHHHHHHH
Confidence                     00001 57899999999999999999999977 54 3445554 4444

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.59  E-value=1.5e-14  Score=105.51  Aligned_cols=134  Identities=18%  Similarity=0.279  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHHHHHHHHH
Q 045242           13 PFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVR-PKMTLSIFVKILLLGLLEPTIDQ   91 (243)
Q Consensus        13 ~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~   91 (243)
                      ..++.++++++||...++.|..+ ++.||..-++.|..+..+++..++....+.+. ...+.|.|..+.+.|+.+ +...
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl-~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~-glsw   81 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGL-EGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAG-GLSW   81 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc-cccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHH-HHHH
Confidence            57889999999999999999996 56999999999999999988887766554332 225778788888888666 9999


Q ss_pred             HHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHH
Q 045242           92 NLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMT  154 (243)
Q Consensus        92 ~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~  154 (243)
                      .+||.+++...++.+..+..++|+++++++++++|||++.++      ++|+++..+|++++.
T Consensus        82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~------~iG~~LI~~Gailvs  138 (140)
T COG2510          82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPT------WIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHH------HHHHHHHHhCeeeEe
Confidence            999999999999999999999999999999999999999997      999999999998764

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.51  E-value=5.4e-12  Score=104.82  Aligned_cols=188  Identities=14%  Similarity=0.099  Sum_probs=143.6

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC---CCCCHHHHHHHHHHHHH
Q 045242            9 IRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVR---PKMTLSIFVKILLLGLL   85 (243)
Q Consensus         9 ~~~~~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~   85 (243)
                      +..+|+++.+.+.++||..+...|..  +..++.++...|.+.+..++..+....++.+.   ...+++.+..+.+.+..
T Consensus         4 ~~~~Gil~~l~Ay~lwG~lp~y~kll--~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l   81 (293)
T COG2962           4 DSRKGILLALLAYLLWGLLPLYFKLL--EPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL   81 (293)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHH--ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH
Confidence            45789999999999999999999998  45999999999999999998876655433221   11244556666666666


Q ss_pred             HHHHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHhCCccCCCC
Q 045242           86 EPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPW  165 (243)
Q Consensus        86 ~~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~  165 (243)
                      . +.+...|.+++..-.+-++|.=.+..|++.++++.+++|||+++.|      ++++.++.+|+...+...|       
T Consensus        82 i-~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q------~iAV~lA~~GV~~~~~~~g-------  147 (293)
T COG2962          82 I-GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQ------WIAVGLAAAGVLIQTWLLG-------  147 (293)
T ss_pred             H-HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHcC-------
Confidence            5 9999999999999999999999999999999999999999999997      9999999999999974332       


Q ss_pred             CCCccCcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Q 045242          166 TNHNYHQESTSNSSVQSPIKGALMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVAL  234 (243)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~G~~~~llaal~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (243)
                                    +.+     ..++.=+++|+.|-..-|+ .+ . |..+-....++.-....+...+
T Consensus       148 --------------~lp-----wval~la~sf~~Ygl~RK~-~~-v-~a~~g~~lE~l~l~p~al~yl~  194 (293)
T COG2962         148 --------------SLP-----WVALALALSFGLYGLLRKK-LK-V-DALTGLTLETLLLLPVALIYLL  194 (293)
T ss_pred             --------------CCc-----HHHHHHHHHHHHHHHHHHh-cC-C-chHHhHHHHHHHHhHHHHHHHH
Confidence                          112     1345667899999987444 33 2 3444444455444444444433

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.50  E-value=1.6e-12  Score=111.18  Aligned_cols=192  Identities=16%  Similarity=0.131  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 045242           13 PFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTIDQN   92 (243)
Q Consensus        13 ~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   92 (243)
                      +++++++++++||..++..|.. . +.++.++.  |..++.+++..+....++++  +..++.+..-+..|.. ...++.
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~-~-g~~~~~~~--~~~~g~l~~~~~~~~~~~~~--~~~~~~~~~g~l~G~~-w~ig~~   74 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKI-G-GGPYSQTL--GTTFGALILSIAIAIFVLPE--FWALSIFLVGLLSGAF-WALGQI   74 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhcc-C-CCHHHHHH--HHHHHHHHHHHHHHHHhCCc--ccccHHHHHHHHHHHH-HHhhhh
Confidence            4678999999999999999998 4 68888876  78788777766544433221  1223434434444444 588999


Q ss_pred             HHHHhhcccChhhhhhhcc-chhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHhCCccCCCCCCCccC
Q 045242           93 LFYTGMKYTTATFTTAMAN-VLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYH  171 (243)
Q Consensus        93 ~~~~~l~~~~~~~a~~i~~-~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~  171 (243)
                      +++.++++++.+.+..+.+ ++|++..+.+.+++||+.+.++  ...-+.|++++++|+.++...++.         +. 
T Consensus        75 ~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~--~~~~~~g~~l~l~G~~l~~~~~~~---------~~-  142 (290)
T TIGR00776        75 NQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQ--TLLGLLALILIIIGVYLTSRSKDK---------SA-  142 (290)
T ss_pred             hHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHH--HHHHHHHHHHHHHhHheEEecccc---------cc-
Confidence            9999999999999988888 8889999999999999998761  011188899999998887411110         00 


Q ss_pred             cCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH---HHHHHHHHHHHH
Q 045242          172 QESTSNSSVQSPIKGALMITIGCFSWAGFMVLQAITLKSYPTELSLT---ALICLMGTIEGT  230 (243)
Q Consensus       172 ~~~~~~~~~~~~~~G~~~~llaal~~a~~~v~~k~~~~~~~~~~~~~---~~~~~~~~~~~~  230 (243)
                          ++++..+...|.+++++++++|+.|.+..|+.  +. |+...+   .+..+.++.+..
T Consensus       143 ----~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~-~~~~~~~~~~~g~~~~~~~~~  197 (290)
T TIGR00776       143 ----GIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GV-DGLSVLLPQAIGMVIGGIIFN  197 (290)
T ss_pred             ----ccccccchhhHHHHHHHHHHHHHHHHHHHHHc--CC-CcceehhHHHHHHHHHHHHHH
Confidence                00000233679999999999999999999975  35 467774   444444444333

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.48  E-value=1.6e-12  Score=109.14  Aligned_cols=133  Identities=19%  Similarity=0.306  Sum_probs=114.3

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 045242            9 IRAKPFLAVILLQFGYAGMSIFSKFALNKGMSP--HVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLE   86 (243)
Q Consensus         9 ~~~~~~~~~~~a~~~~a~~~~~~k~~~~~~~~~--~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   86 (243)
                      .+.+|..+.++++++|+.+.+..|... ++.++  .....+|+..+.+++.|+....++.  ...+.+++......+.++
T Consensus       125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  201 (260)
T TIGR00950       125 INPAGLLLGLGSGISFALGTVLYKRLV-KKEGPELLQFTGWVLLLGALLLLPFAWFLGPN--PQALSLQWGALLYLGLIG  201 (260)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhHHh-hcCCchHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHHHHH
Confidence            446799999999999999999999984 44664  4555578999999999887654332  234667788888899998


Q ss_pred             HHHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHH
Q 045242           87 PTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGA  150 (243)
Q Consensus        87 ~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv  150 (243)
                      +..++.++++++++.+++.++.+.++.|+++++++++++||+++..+      +.|..+.+.|+
T Consensus       202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~------~~G~~li~~g~  259 (260)
T TIGR00950       202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQ------LIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHhc
Confidence            89999999999999999999999999999999999999999999997      99999999886

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.47  E-value=5.3e-12  Score=102.60  Aligned_cols=185  Identities=16%  Similarity=0.137  Sum_probs=150.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 045242           13 PFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTIDQN   92 (243)
Q Consensus        13 ~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   92 (243)
                      ++..++.+.+.-=...-+.|..+. ...+.-++.+|..+++++++++.    |+.+.+.+++++......|... +..+.
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP-~vG~~g~t~lRl~~aaLIll~l~----RPwr~r~~~~~~~~~~~yGvsL-g~MNl   86 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFP-LVGAAGVTALRLAIAALILLALF----RPWRRRLSKPQRLALLAYGVSL-GGMNL   86 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHcc-ccChhhHHHHHHHHHHHHHHHHh----hHHHhccChhhhHHHHHHHHHH-HHHHH
Confidence            577777777777777788888865 49999999999999999998753    2333467888899999999987 88899


Q ss_pred             HHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHhCCccCCCCCCCccCc
Q 045242           93 LFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQ  172 (243)
Q Consensus        93 ~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~  172 (243)
                      +||.+++..|-+.+..+.++-|+..+.++.   |+.   +      ....+.+++.|+.++. ..+              
T Consensus        87 ~FY~si~riPlGiAVAiEF~GPL~vA~~~s---Rr~---~------d~vwvaLAvlGi~lL~-p~~--------------  139 (292)
T COG5006          87 LFYLSIERIPLGIAVAIEFTGPLAVALLSS---RRL---R------DFVWVALAVLGIWLLL-PLG--------------  139 (292)
T ss_pred             HHHHHHHhccchhhhhhhhccHHHHHHHhc---cch---h------hHHHHHHHHHHHHhhe-ecc--------------
Confidence            999999999999999999999998877754   111   2      2667778889999985 111              


Q ss_pred             CCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Q 045242          173 ESTSNSSVQSPIKGALMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALF  235 (243)
Q Consensus       173 ~~~~~~~~~~~~~G~~~~llaal~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (243)
                          .+...-+..|..+++.++.||+.|.+..||..+..+ ...-+...+..++++.+|+...
T Consensus       140 ----~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~a~gm~vAaviv~Pig~~  197 (292)
T COG5006         140 ----QSVWSLDPVGVALALGAGACWALYIVLGQRAGRAEH-GTAGVAVGMLVAALIVLPIGAA  197 (292)
T ss_pred             ----CCcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC-CchHHHHHHHHHHHHHhhhhhh
Confidence                123345789999999999999999999999887654 6788899999999999999864

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.43  E-value=3.4e-14  Score=116.10  Aligned_cols=207  Identities=15%  Similarity=0.204  Sum_probs=149.3

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHH
Q 045242            9 IRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPT   88 (243)
Q Consensus         9 ~~~~~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   88 (243)
                      +.++|..+..++ ..+....++.+..+  ..+|.+..-.|++.-.++..|..+.++..-..+...|  .++++.|+.| .
T Consensus        35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~--e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R--~~LiLRg~mG-~  108 (346)
T KOG4510|consen   35 KPNLGLLLLTVS-YFFNSCMVVSTKVL--ENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKR--KWLILRGFMG-F  108 (346)
T ss_pred             CCccCceehhhH-HHHhhHHHhhhhhh--ccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcE--EEEEeehhhh-h
Confidence            445677777777 55555555555552  3899999999977776666665444332211111222  3567788888 7


Q ss_pred             HHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHhCCccCCCCCCC
Q 045242           89 IDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNH  168 (243)
Q Consensus        89 ~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~  168 (243)
                      .+....||+++|.+.++|+++..+.|+++.+++|.++||+.++.+      ..+..+.+.|+++++  .+|...-.  ++
T Consensus       109 tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~e------aL~s~itl~GVVLIv--RPpFlFG~--~t  178 (346)
T KOG4510|consen  109 TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFE------ALGSLITLLGVVLIV--RPPFLFGD--TT  178 (346)
T ss_pred             hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHH------HHHHHHhhheEEEEe--cCCcccCC--Cc
Confidence            777888999999999999999999999999999999999999998      999999999999996  33333211  11


Q ss_pred             ccCcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHh
Q 045242          169 NYHQESTSNSSVQSPIKGALMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFL  236 (243)
Q Consensus       169 ~~~~~~~~~~~~~~~~~G~~~~llaal~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (243)
                      ..+    +.+....+..|...++.+++.-|.-.++.|+++|+. |......|..+++.+..++.....
T Consensus       179 ~g~----~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~-h~~msvsyf~~i~lV~s~I~~~~i  241 (346)
T KOG4510|consen  179 EGE----DSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNA-HAIMSVSYFSLITLVVSLIGCASI  241 (346)
T ss_pred             ccc----ccccccccCCchHHHHHhHhhhhhHHHHHHHhhccc-cEEEEehHHHHHHHHHHHHHHhhc
Confidence            111    112234567788899999999999999999998987 455666677777777777665443

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.40  E-value=2.3e-11  Score=104.25  Aligned_cols=137  Identities=14%  Similarity=0.093  Sum_probs=114.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 045242           10 RAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTI   89 (243)
Q Consensus        10 ~~~~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   89 (243)
                      ...|.++.+.++++|+.+.+..|.. .++.++.... +...++++++.|+......  ....++..+...+..|++++.+
T Consensus       146 ~~~G~ll~l~aa~~~a~~~v~~r~~-~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~  221 (293)
T PRK10532        146 DLTGAALALGAGACWAIYILSGQRA-GAEHGPATVA-IGSLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTAL  221 (293)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHH-hccCCchHHH-HHHHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHH
Confidence            3468999999999999999999998 4567887765 4556677777776654332  1234556566677899999999


Q ss_pred             HHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHH
Q 045242           90 DQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLI  156 (243)
Q Consensus        90 ~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~  156 (243)
                      ++.+|++++++.++++++.+.+++|+++.+++++++||+++..+      ++|.++.+.|++.....
T Consensus       222 ~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~------~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        222 PYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQ------WLALGAIIAASMGSTLT  282 (293)
T ss_pred             HHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999997      99999999999999643

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.39  E-value=1.8e-11  Score=104.86  Aligned_cols=137  Identities=16%  Similarity=0.109  Sum_probs=117.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 045242           10 RAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTI   89 (243)
Q Consensus        10 ~~~~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   89 (243)
                      +.+|.++.++++++|+.+.+..|.. .+ .++...+.+++.++++.+.++............+.+.+......+++++.+
T Consensus       148 ~~~G~l~~l~a~~~~a~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~  225 (292)
T PRK11272        148 NPWGAILILIASASWAFGSVWSSRL-PL-PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSII  225 (292)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhc-CC-CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHH
Confidence            3569999999999999999999997 33 455677889999999988887654432221223567788999999999899


Q ss_pred             HHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHH
Q 045242           90 DQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMT  154 (243)
Q Consensus        90 ~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~  154 (243)
                      ++.+|++++++.++++++.+.+++|++++++++++++|+++..+      ++|.++.+.|+++..
T Consensus       226 ~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~------iiG~~lIi~gv~~~~  284 (292)
T PRK11272        226 AISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIE------WLALGVIVFAVVLVT  284 (292)
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHH------HHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999997      999999999999986

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.31  E-value=1.5e-10  Score=101.67  Aligned_cols=138  Identities=9%  Similarity=0.099  Sum_probs=108.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHHHHHHhhcCCC----CCCCHHHHHHHHHHHHH
Q 045242           11 AKPFLAVILLQFGYAGMSIFSKFALNKGMSP-HVFAVYRHAVATIVVAPFALILDRKVR----PKMTLSIFVKILLLGLL   85 (243)
Q Consensus        11 ~~~~~~~~~a~~~~a~~~~~~k~~~~~~~~~-~~~~~~r~~~~~i~l~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~   85 (243)
                      ..|.++++.++++|+.+.+..|.... ++++ ...+++....+++.+.+.....++...    ...+.. ....+..++.
T Consensus       188 ~lG~~l~l~aa~~wa~~~il~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~  265 (358)
T PLN00411        188 LIGGALLTIQGIFVSVSFILQAHIMS-EYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAII  265 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHH
Confidence            34889999999999999999998854 4654 466777877777776665555443211    112323 3335555655


Q ss_pred             HHHHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHh
Q 045242           86 EPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIK  157 (243)
Q Consensus        86 ~~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~  157 (243)
                       ..+++.+|++++++.+++.++...++.|++++++++++++|++++.+      ++|.++.+.|++++...+
T Consensus       266 -t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~------~iG~~LIl~Gv~l~~~~~  330 (358)
T PLN00411        266 -TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGC------LIGGILITLGFYAVMWGK  330 (358)
T ss_pred             -HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHHHHHhhh
Confidence             47899999999999999999999999999999999999999999997      999999999999987433

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.28  E-value=6.1e-11  Score=101.41  Aligned_cols=112  Identities=19%  Similarity=0.322  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHhC
Q 045242           79 ILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKG  158 (243)
Q Consensus        79 ~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~  158 (243)
                      .+..+.+- ..++..+..++.+++++..+++.++.-+|+..++.++.+||+++.      |+++..+++.|+++++.+++
T Consensus       162 sl~fc~lW-F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s  234 (416)
T KOG2765|consen  162 SLFFCPLW-FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDS  234 (416)
T ss_pred             HHHHHHHH-HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEeccc
Confidence            33444444 889999999999999999999999999999999999999999999      59999999999999973322


Q ss_pred             CccCCCCCCCccCcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 045242          159 PVLDLPWTNHNYHQESTSNSSVQSPIKGALMITIGCFSWAGFMVLQAITLKSY  211 (243)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~llaal~~a~~~v~~k~~~~~~  211 (243)
                                  .|  .++..+.+...|+++++++|+.||.|.++.||...+.
T Consensus       235 ------------~~--~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~e  273 (416)
T KOG2765|consen  235 ------------KQ--NSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDE  273 (416)
T ss_pred             ------------cc--cccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence                        11  1123456678999999999999999999998876655

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.28  E-value=1.5e-10  Score=99.28  Aligned_cols=132  Identities=11%  Similarity=0.131  Sum_probs=105.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 045242           11 AKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTID   90 (243)
Q Consensus        11 ~~~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   90 (243)
                      ..|.+++++++++|+.+.+..|.. .++.++.....   ..+++.+.+.....+ ......+.+.+......++ .+.++
T Consensus       155 ~~G~~~~l~aa~~~A~~~v~~k~~-~~~~~~~~~~~---~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~-~t~~~  228 (295)
T PRK11689        155 PLSYGLAFIGAFIWAAYCNVTRKY-ARGKNGITLFF---ILTALALWIKYFLSP-QPAMVFSLPAIIKLLLAAA-AMGFG  228 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhc-cCCCCchhHHH---HHHHHHHHHHHHHhc-CccccCCHHHHHHHHHHHH-HHHHH
Confidence            458999999999999999999998 55678765432   333444444333322 2122356677777777775 56899


Q ss_pred             HHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHH
Q 045242           91 QNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMT  154 (243)
Q Consensus        91 ~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~  154 (243)
                      +.+|++++++.++++++.+.+++|++++++++++++|+++..+      ++|.++++.|+.+..
T Consensus       229 ~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~------~iG~~lI~~gv~~~~  286 (295)
T PRK11689        229 YAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSF------WQGVAMVTAGSLLCW  286 (295)
T ss_pred             HHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHhHHHHh
Confidence            9999999999999999999999999999999999999999997      999999999998885

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.26  E-value=2.5e-11  Score=89.42  Aligned_cols=103  Identities=18%  Similarity=0.382  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHH
Q 045242           46 VYRHAVATIVVAPFALILDRKV--RPKMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWI  123 (243)
Q Consensus        46 ~~r~~~~~i~l~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~  123 (243)
                      .+|+..+.+++..+....++.+  .+..+++.+.+....|.++...++.++++|+++.+ +.++.+.++.|+++.+++++
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            5799999999888776643321  12234455667777788886799999999999999 58889999999999999999


Q ss_pred             HhhccccccccccccchhHHHHHHHHHHHHHH
Q 045242          124 IRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTL  155 (243)
Q Consensus       124 ~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~  155 (243)
                      ++|||+++++      +.++.++++|+.++..
T Consensus        81 ~~~er~~~~~------~~a~~l~~~Gv~li~~  106 (113)
T PF13536_consen   81 FFKERLSPRR------WLAILLILIGVILIAW  106 (113)
T ss_pred             HhcCCCCHHH------HHHHHHHHHHHHHHhh
Confidence            9999999996      9999999999999973

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.21  E-value=9.5e-10  Score=94.51  Aligned_cols=137  Identities=14%  Similarity=0.227  Sum_probs=108.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCCHHHHHHHHHH
Q 045242           11 AKPFLAVILLQFGYAGMSIFSKFALNKGMSP---HVFAVYRHAVATIVVAPFALILDRKV-----RPKMTLSIFVKILLL   82 (243)
Q Consensus        11 ~~~~~~~~~a~~~~a~~~~~~k~~~~~~~~~---~~~~~~r~~~~~i~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~   82 (243)
                      ..|.++.++++++|+.+.+..|... +..++   .....+....+.+.+.......+...     ....+.+.+..++..
T Consensus       142 ~~G~~l~l~aal~~a~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  220 (299)
T PRK11453        142 MLGFMLTLAAAFSWACGNIFNKKIM-SHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYL  220 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-cccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHH
Confidence            4699999999999999999999873 32332   33344455554444433333332211     123567789999999


Q ss_pred             HHHHHHHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHH
Q 045242           83 GLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMT  154 (243)
Q Consensus        83 g~~~~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~  154 (243)
                      |++++.+++.+|+.++++.++++++.+.+++|+++.++++++++|+++..+      ++|.++.++|+.+..
T Consensus       221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~------~iG~~lI~~gv~l~~  286 (299)
T PRK11453        221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQ------FLGAVLIMAGLYINV  286 (299)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHH------HHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999997      999999999998875

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.18  E-value=8.2e-09  Score=88.89  Aligned_cols=188  Identities=16%  Similarity=0.131  Sum_probs=142.4

Q ss_pred             HHHHHHHHHHhC-CCC--hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 045242           26 GMSIFSKFALNK-GMS--PHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTT  102 (243)
Q Consensus        26 ~~~~~~k~~~~~-~~~--~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~  102 (243)
                      .+.+.......+ ...  |..+++.++....++..+.....++++   .++..+..+...+++. .++..+-+.++++.+
T Consensus        14 ~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~al~~i~   89 (303)
T PF08449_consen   14 SYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPK---SRKIPLKKYAILSFLF-FLASVLSNAALKYIS   89 (303)
T ss_pred             HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccC---CCcChHHHHHHHHHHH-HHHHHHHHHHHHhCC
Confidence            344555554432 234  889999999999888777554433122   2223355666777776 888999999999999


Q ss_pred             hhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHhCCccCCCCCCCccCcCCCCCCCCCc
Q 045242          103 ATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQESTSNSSVQS  182 (243)
Q Consensus       103 ~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (243)
                      ...-.++-+..|+.+++++.+++|+|.+.++      +.++++..+|+.+..+.+....            ..++....+
T Consensus        90 ~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~------~~~v~li~~Gv~~~~~~~~~~~------------~~~~~~~~~  151 (303)
T PF08449_consen   90 YPTQIVFKSSKPIPVMILGVLILGKRYSRRQ------YLSVLLITIGVAIFTLSDSSSS------------SSSNSSSFS  151 (303)
T ss_pred             hHHHHHHhhhHHHHHHHHHHHhcCccccHHH------HHHHHHHHhhHheeeecccccc------------ccccccccc
Confidence            9999999999999999999999999999996      9999999999999974432110            001112222


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHHHHH
Q 045242          183 PIKGALMITIGCFSWAGFMVLQAITLKSYP-TELSLTALICLMGTIEGTIVALF  235 (243)
Q Consensus       183 ~~~G~~~~llaal~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  235 (243)
                      ...|+++.+++.++-+...+++++..++++ ++...+++...++.+...+....
T Consensus       152 ~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~  205 (303)
T PF08449_consen  152 SALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFL  205 (303)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            344999999999999999999999988765 57899999999999988887776

; GO: 0055085 transmembrane transport

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.15  E-value=3e-10  Score=96.76  Aligned_cols=134  Identities=16%  Similarity=0.076  Sum_probs=96.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 045242           11 AKPFLAVILLQFGYAGMSIFSKFALNKGMSPH----VFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLE   86 (243)
Q Consensus        11 ~~~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~----~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   86 (243)
                      .++..+.++++++|+.+.+..|.. .++.++.    ....+.+...++.+.+.....+++. .......+......+.+.
T Consensus       143 ~~g~~~~l~aal~~a~~~i~~k~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  220 (281)
T TIGR03340       143 RKAYAWALAAALGTAIYSLSDKAA-ALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS-MFPYARQILPSATLGGLM  220 (281)
T ss_pred             hhHHHHHHHHHHHHHHhhhhcccc-ccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHHHHHHHHHH
Confidence            457778999999999999998876 3334433    2333333333222222221112111 111223355667777777


Q ss_pred             HHHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHH
Q 045242           87 PTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMF  152 (243)
Q Consensus        87 ~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l  152 (243)
                      ..+++.+|++++++.+++.++.+.+++|+++.+++++++||+++..+      ++|..+.++|+.+
T Consensus       221 s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~------~iG~~lil~Gv~l  280 (281)
T TIGR03340       221 IGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTR------LMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHH------HHHHHHHHHhHHh
Confidence            78999999999999999999999999999999999999999999997      9999999999876

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.10  E-value=9.7e-10  Score=94.53  Aligned_cols=140  Identities=14%  Similarity=0.186  Sum_probs=108.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---------CCHHHHHH-
Q 045242           10 RAKPFLAVILLQFGYAGMSIFSKFALNK-GMSPHVFAVYRHAVATIVVAPFALILDRKVRPK---------MTLSIFVK-   78 (243)
Q Consensus        10 ~~~~~~~~~~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~---------~~~~~~~~-   78 (243)
                      +..|.++++++++.|+.+.+..|...++ ++||..+..+....+++.+.|+....+......         ........ 
T Consensus       143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (302)
T TIGR00817       143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV  222 (302)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence            3569999999999999999999998431 599999999999999999999876544211100         01011111 


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHH
Q 045242           79 ILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTL  155 (243)
Q Consensus        79 ~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~  155 (243)
                      .+..+.......+.+++.++++++++++++...+.|++++++++++++|+++..+      +.|.++++.|+.+...
T Consensus       223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~------~~G~~lil~Gv~l~~~  293 (302)
T TIGR00817       223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQ------VFGTGIAIAGVFLYSR  293 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhH------HHHHHHHHHHHHHHHH
Confidence            2223332333444677789999999999999999999999999999999999997      9999999999999863

specificities overlap.

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.02  E-value=1.9e-09  Score=92.30  Aligned_cols=185  Identities=14%  Similarity=0.159  Sum_probs=147.5

Q ss_pred             HHHHHHHHHHh--CCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCh
Q 045242           26 GMSIFSKFALN--KGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTA  103 (243)
Q Consensus        26 ~~~~~~k~~~~--~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~  103 (243)
                      ......|..++  +.--|..++..+...+.+.+...-.....+..+..++..+...+.+|++. +++..+-+.++++.++
T Consensus        31 ~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~-~~~~v~~n~Sl~~v~V  109 (316)
T KOG1441|consen   31 GVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVF-CISHVLGNVSLSYVPV  109 (316)
T ss_pred             eeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHH-HHHHHhcchhhhccch
Confidence            44456677766  33458889999888877777655443333322222445577888888887 9999999999999999


Q ss_pred             hhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHhCCccCCCCCCCccCcCCCCCCCCCcc
Q 045242          104 TFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQESTSNSSVQSP  183 (243)
Q Consensus       104 ~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (243)
                      +....+-.++|++++++++++.+|+.+...      ...++....|+.+.+.                      .+...+
T Consensus       110 sF~q~iKa~~P~~tvl~~~~~~~~~~s~~~------~lsL~piv~GV~ias~----------------------~e~~fn  161 (316)
T KOG1441|consen  110 SFYQTIKALMPPFTVLLSVLLLGKTYSSMT------YLSLLPIVFGVAIASV----------------------TELSFN  161 (316)
T ss_pred             hHHHHHHhhcchhHHHHHHHHhCCCCcceE------EEEEEEeeeeEEEeee----------------------cccccc
Confidence            999999999999999999999999999996      8888888888888862                      233456


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHh--cCC-chhHHHHHHHHHHHHHHH-HHHHHhccC
Q 045242          184 IKGALMITIGCFSWAGFMVLQAITLK--SYP-TELSLTALICLMGTIEGT-IVALFLERG  239 (243)
Q Consensus       184 ~~G~~~~llaal~~a~~~v~~k~~~~--~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~  239 (243)
                      ..|...++.+.+..+..+++.|+..+  +.+ |++....++.-++.+.++ |+....|++
T Consensus       162 ~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~  221 (316)
T KOG1441|consen  162 LFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGN  221 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhccc
Confidence            89999999999999999999999884  333 789999999999999999 887776653

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.93  E-value=5e-08  Score=85.69  Aligned_cols=138  Identities=16%  Similarity=0.198  Sum_probs=103.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC--------CCCHHH
Q 045242           10 RAKPFLAVILLQFGYAGMSIFSKFALNK------GMSPHVFAVYRHAVATIVVAPFALILDRKVRP--------KMTLSI   75 (243)
Q Consensus        10 ~~~~~~~~~~a~~~~a~~~~~~k~~~~~------~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~--------~~~~~~   75 (243)
                      +..|.++++++++.|+...+..|..+++      +.++.....+....++++++|+....+.....        ..+...
T Consensus       192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~  271 (350)
T PTZ00343        192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYT  271 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccc
Confidence            4569999999999999999999998643      25677777778899999999987644321100        011101


Q ss_pred             HHHHHHHHHHHHHHHHHHHH----HhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHH
Q 045242           76 FVKILLLGLLEPTIDQNLFY----TGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAM  151 (243)
Q Consensus        76 ~~~~~~~g~~~~~~~~~~~~----~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~  151 (243)
                      +..... .++..++.+.+++    ++++++++.+.++...+.|++++++++++++|+++..+      ++|.++++.|++
T Consensus       272 ~~~~l~-~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~------~iG~~lii~Gv~  344 (350)
T PTZ00343        272 KGIIIF-KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLG------YLGMAVAILGAL  344 (350)
T ss_pred             hHHHHH-HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHh------HHHHHHHHHHHH
Confidence            111111 2222244444444    69999999999999999999999999999999999997      999999999998


Q ss_pred             HHH
Q 045242          152 FMT  154 (243)
Q Consensus       152 l~~  154 (243)
                      +..
T Consensus       345 lYs  347 (350)
T PTZ00343        345 LYS  347 (350)
T ss_pred             HHh
Confidence            864

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.92  E-value=2.6e-08  Score=85.28  Aligned_cols=130  Identities=15%  Similarity=0.173  Sum_probs=103.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH---HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 045242           10 RAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHA---VATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLE   86 (243)
Q Consensus        10 ~~~~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~---~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   86 (243)
                      ..||+++.+++++.++.+.+..|..   ++||.+..+.+..   +++.++.+..  +  +.++ ...+..+.....|++ 
T Consensus       150 ~~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~--~--~~~~-~~~~~~~~~~~~Gi~-  220 (290)
T TIGR00776       150 FKKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH--I--LAKP-LKKYAILLNILPGLM-  220 (290)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH--h--cccc-hHHHHHHHHHHHHHH-
Confidence            3679999999999999999999986   3899988666555   3333333322  1  1112 233445556668888 


Q ss_pred             HHHHHHHHHHhhc-ccChhhhhhhccchhHHHHHHHHHHhhccccccccccccch----hHHHHHHHHHHHHH
Q 045242           87 PTIDQNLFYTGMK-YTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKV----FGTIVTVGGAMFMT  154 (243)
Q Consensus        87 ~~~~~~~~~~~l~-~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~----~g~~l~~~Gv~l~~  154 (243)
                      ...++.+|+.+.+ +.+++.++.+.+..|+.+.+.+++++||+.+++|      +    +|.++.+.|+.++.
T Consensus       221 ~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~------~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       221 WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKRE------MIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcce------eehhHHHHHHHHHHHHHHh
Confidence            4999999999999 9999999999999999999999999999999997      8    99999999998875

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.91  E-value=6.4e-08  Score=80.70  Aligned_cols=152  Identities=16%  Similarity=0.207  Sum_probs=114.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHH
Q 045242           72 TLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAM  151 (243)
Q Consensus        72 ~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~  151 (243)
                      ++++.+++.+-+++. .+.+.+.+.++++.+++.-.++..+-.+++++++++++|+|++.+|      |.++++..+|+.
T Consensus        13 ~~~~~~~~~vPA~lY-~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~q------W~aL~lL~~Gv~   85 (244)
T PF04142_consen   13 SPKDTLKLAVPALLY-AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQ------WLALFLLVAGVV   85 (244)
T ss_pred             hHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhh------HHHHHHHHHHHh
Confidence            556777888888885 9999999999999999999999999999999999999999999997      999999999999


Q ss_pred             HHHHHhCCccCCCCCCCccCcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHH
Q 045242          152 FMTLIKGPVLDLPWTNHNYHQESTSNSSVQSPIKGALMITIGCFSWAGFMVLQAITLKSYP-TELSLTALICLMGTIEGT  230 (243)
Q Consensus       152 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~llaal~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~  230 (243)
                      ++-..+....     +++.....+.+....+...|.++.++++++-++..++..|.+|+.+ +...........|.++.+
T Consensus        86 lv~~~~~~~~-----~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~  160 (244)
T PF04142_consen   86 LVQLSSSQSS-----DNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNL  160 (244)
T ss_pred             eeecCCcccc-----ccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHH
Confidence            9852221100     0000000001122455789999999999999999999999998864 344445555566666666


Q ss_pred             HHHHH
Q 045242          231 IVALF  235 (243)
Q Consensus       231 ~~~~~  235 (243)
                      +...+
T Consensus       161 ~~~~~  165 (244)
T PF04142_consen  161 LALLL  165 (244)
T ss_pred             HHHhc
Confidence            55444

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.90  E-value=9.2e-08  Score=80.86  Aligned_cols=134  Identities=16%  Similarity=0.260  Sum_probs=109.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHH
Q 045242           10 RAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAV-YRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPT   88 (243)
Q Consensus        10 ~~~~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~-~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   88 (243)
                      ...|..+.+.+++.|+.+.+..|...  ..++..... +.+........+..  ..... .....+.+......|+++..
T Consensus       152 ~~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~g~~~~~  226 (292)
T COG0697         152 SLLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLFF--LSGFG-APILSRAWLLLLYLGVFSTG  226 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHH--hcccc-ccCCHHHHHHHHHHHHHHHH
Confidence            35799999999999999999999884  477777777 55553333333322  22121 34566778899999999977


Q ss_pred             HHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHH
Q 045242           89 IDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMT  154 (243)
Q Consensus        89 ~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~  154 (243)
                      .++.+++++++..+++.++.+.++.|+++.++++++++|+++..+      +.|..+.+.|+.+..
T Consensus       227 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~------~~G~~li~~g~~l~~  286 (292)
T COG0697         227 LAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQ------LLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHHHHh
Confidence            899999999999999999999999999999999999999999997      999999999999885

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.89  E-value=5.6e-08  Score=83.42  Aligned_cols=132  Identities=14%  Similarity=0.104  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 045242           15 LAVILLQFGYAGMSIFSKFALNKG-MSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTIDQNL   93 (243)
Q Consensus        15 ~~~~~a~~~~a~~~~~~k~~~~~~-~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   93 (243)
                      ...+.++++|+.+.+..|....+. .++.....+....+.+...+.... ............+......|+. ..+++.+
T Consensus       152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~-t~i~~~~  229 (296)
T PRK15430        152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADS-STSHMGQNPMSLNLLLIAAGIV-TTVPLLC  229 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccC-CcccccCCcHHHHHHHHHHHHH-HHHHHHH
Confidence            457788999999999998873211 223344444454544443322110 0000111122223344444554 5799999


Q ss_pred             HHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHH
Q 045242           94 FYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMT  154 (243)
Q Consensus        94 ~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~  154 (243)
                      |++++++.+++.++.+.++.|+++.++++++++|++++.+      +.|..+.+.|+.++.
T Consensus       230 ~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~------~~G~~lI~~~~~v~~  284 (296)
T PRK15430        230 FTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADK------MVTFAFIWVALAIFV  284 (296)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHH------HHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999997      999999999988885

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.87  E-value=9.9e-08  Score=73.57  Aligned_cols=133  Identities=18%  Similarity=0.279  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCC----C-------CHHH
Q 045242           13 PFLAVILLQFGYAGMSIFSKFALNK------GMSPHVFAVYRHAVATIVVAPFALILDRKVRPK----M-------TLSI   75 (243)
Q Consensus        13 ~~~~~~~a~~~~a~~~~~~k~~~~~------~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~----~-------~~~~   75 (243)
                      |.++++.+.+..+...+..|..+++      +.++.++..+-...+.+++.|.....++.+..+    .       ..+.
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            5678899999999999999998866      689999999999999999999887776544110    0       2244


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHH
Q 045242           76 FVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMF  152 (243)
Q Consensus        76 ~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l  152 (243)
                      +..++..|++. ...+...+..++++++...++....-.+.+.++++++++|+++..+      +.|.++++.|..+
T Consensus        81 ~~~~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~------~~G~~l~~~G~~~  150 (153)
T PF03151_consen   81 IFLLILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQ------IIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHH------HHHHHHHHHHHhe
Confidence            55556666666 8899999999999999999999999999999999999999999997      9999999999875

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=98.75  E-value=4.8e-10  Score=91.45  Aligned_cols=197  Identities=15%  Similarity=0.238  Sum_probs=145.2

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHH
Q 045242            9 IRAKPFLAVILLQFGYAGMSIFSKFALNKGMS-PHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEP   87 (243)
Q Consensus         9 ~~~~~~~~~~~a~~~~a~~~~~~k~~~~~~~~-~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   87 (243)
                      +-..+..+.-+-+++-..........-+++.+ |..-++.-+..-+++..|+..+++  +..+   ..|.+.++++++. 
T Consensus        15 k~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~--~~~~---~~~~hYilla~~D-   88 (336)
T KOG2766|consen   15 KTLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRR--KYIK---AKWRHYILLAFVD-   88 (336)
T ss_pred             hhhheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhh--HHHH---HHHHHhhheeEEe-
Confidence            33445555544445544444444443245454 666777777777788888766533  2122   2255688888887 


Q ss_pred             HHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHhCCccCCCCCC
Q 045242           88 TIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTN  167 (243)
Q Consensus        88 ~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~  167 (243)
                      .=++.+...+.||++-+.+..+-.-.-+...+++|++++.|..+.+      +.|.++|+.|+.++++++-  +      
T Consensus        89 VEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmk------i~gV~iCi~GvvmvV~sDV--~------  154 (336)
T KOG2766|consen   89 VEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMK------ISGVVICIVGVVMVVFSDV--H------  154 (336)
T ss_pred             ecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhhe------eeeEEeEecceEEEEEeee--c------
Confidence            6677778899999999999998887777778999999999999996      9999999999999963221  0      


Q ss_pred             CccCcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Q 045242          168 HNYHQESTSNSSVQSPIKGALMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIV  232 (243)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~G~~~~llaal~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (243)
                            +.+...+.+...|+.+.+++|-+||..++....+.|+. |....+....++|+++..+=
T Consensus       155 ------agd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~-d~~elm~~lgLfGaIIsaIQ  212 (336)
T KOG2766|consen  155 ------AGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNA-DRVELMGFLGLFGAIISAIQ  212 (336)
T ss_pred             ------cccccCCCCCccCcEEEEecceeeeeccccHHHHHhcC-cHHHHHHHHHHHHHHHHHHH
Confidence                  00123456678999999999999999999999988988 58888889999999988876

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.70  E-value=3.8e-07  Score=74.65  Aligned_cols=136  Identities=13%  Similarity=0.081  Sum_probs=118.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 045242           10 RAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTI   89 (243)
Q Consensus        10 ~~~~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   89 (243)
                      +..|..+.+.+..+|+.+.+..|.+ .+..+...-+..-+.+++++.+|+-.......  ..+++.....+..++++..+
T Consensus       146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~-g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~--l~~p~ll~laLgvavlSSal  222 (292)
T COG5006         146 DPVGVALALGAGACWALYIVLGQRA-GRAEHGTAGVAVGMLVAALIVLPIGAAQAGPA--LFSPSLLPLALGVAVLSSAL  222 (292)
T ss_pred             CHHHHHHHHHHhHHHHHHHHHcchh-cccCCCchHHHHHHHHHHHHHhhhhhhhcchh--hcChHHHHHHHHHHHHhccc
Confidence            4468999999999999999999998 54577777888899999999999876544332  35667777888899999999


Q ss_pred             HHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHH
Q 045242           90 DQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMT  154 (243)
Q Consensus        90 ~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~  154 (243)
                      .|.+...++++.|...-+++.++.|.+.++.++++++|.+++.|      |.++...+.+..-.+
T Consensus       223 PYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~q------wlaI~~ViaAsaG~~  281 (292)
T COG5006         223 PYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQ------WLAIAAVIAASAGST  281 (292)
T ss_pred             chHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999997      999998888776554

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=98.67  E-value=2.6e-05  Score=67.06  Aligned_cols=204  Identities=15%  Similarity=0.199  Sum_probs=146.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHHHHHHHHhhcC----CCCC------CCHHHHHH
Q 045242           12 KPFLAVILLQFGYAGMSIFSKFALNKG---MSPHVFAVYRHAVATIVVAPFALILDRK----VRPK------MTLSIFVK   78 (243)
Q Consensus        12 ~~~~~~~~a~~~~a~~~~~~k~~~~~~---~~~~~~~~~r~~~~~i~l~~~~~~~~~~----~~~~------~~~~~~~~   78 (243)
                      .-++.+++..+-++......|+.-..+   +.|....+.--++-.++.....+...|+    ..+.      ..+++.++
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            445556666778899999999884334   6788888887777777776666555322    1111      23345666


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHhC
Q 045242           79 ILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKG  158 (243)
Q Consensus        79 ~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~  158 (243)
                      ..+-+++. ++.+-++|.++.+.+++.-.+...+--+.|+++..+++++|+++.|      |.+.++...|+.++-....
T Consensus        95 ~~vPa~iY-alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Q------w~Al~lL~~Gv~~vQ~~~~  167 (345)
T KOG2234|consen   95 VSVPALIY-ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQ------WMALVLLFAGVALVQLPSL  167 (345)
T ss_pred             HHHHHHHH-HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHH------HHHHHHHHHHHHHHhccCC
Confidence            66667775 7777799999999999999999999999999999999999999997      9999999999999842221


Q ss_pred             CccCCCCCCCccCcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHH-HHHHHHHHHHH
Q 045242          159 PVLDLPWTNHNYHQESTSNSSVQSPIKGALMITIGCFSWAGFMVLQAITLKSYPTELSLTALIC-LMGTIEGTIVA  233 (243)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~llaal~~a~~~v~~k~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  233 (243)
                      +           +.++.+.....+...|....+.+++.=++..++..|++|+-..+..+...++ .+|.++.+...
T Consensus       168 ~-----------~~~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~  232 (345)
T KOG2234|consen  168 S-----------PTGAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTI  232 (345)
T ss_pred             C-----------CCCccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence            1           1111112345667899999999999999999999999987433444444444 44444444443

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.58  E-value=1.1e-05  Score=68.47  Aligned_cols=196  Identities=13%  Similarity=0.118  Sum_probs=143.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH--HHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 045242           13 PFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAV--YRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTID   90 (243)
Q Consensus        13 ~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~--~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   90 (243)
                      +....+.=++.-..+.+..|.++.+.--|..+..  .|.+...+.+...-.. +--+.++++++..++.+-..++. .+.
T Consensus        13 ~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~-~lv~~~~l~~~~~kk~~P~~~lf-~~~   90 (314)
T KOG1444|consen   13 PLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL-GLVNFRPLDLRTAKKWFPVSLLF-VGM   90 (314)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh-ceeecCCcChHHHHHHccHHHHH-HHH
Confidence            3444444444445667777888765323444444  8888877776643221 11234567788888888888876 777


Q ss_pred             HHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHhCCccCCCCCCCcc
Q 045242           91 QNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNY  170 (243)
Q Consensus        91 ~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~  170 (243)
                      ...=..++++.++..-+++-...|+++++.+.+++|.+++.+-      +.+.....+|......               
T Consensus        91 i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v------~~Sv~~m~~~s~~~~~---------------  149 (314)
T KOG1444|consen   91 LFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKV------WASVFAMIIGSVAAAF---------------  149 (314)
T ss_pred             HHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhH------HHHHHHHHHHHHhhcc---------------
Confidence            7777889999999999999999999999999999997777664      8888887777777651               


Q ss_pred             CcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHHHHHhcc
Q 045242          171 HQESTSNSSVQSPIKGALMITIGCFSWAGFMVLQAITLKSYP-TELSLTALICLMGTIEGTIVALFLER  238 (243)
Q Consensus       171 ~~~~~~~~~~~~~~~G~~~~llaal~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (243)
                             .+...+..|..|++...++-+.+.+..|+..+... +....++|..+.+...+....+++++
T Consensus       150 -------~d~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge  211 (314)
T KOG1444|consen  150 -------TDLSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGE  211 (314)
T ss_pred             -------ccceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcc
Confidence                   11223345999999999999999999998776543 46778888888888888888866654

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.56  E-value=1.6e-06  Score=75.26  Aligned_cols=144  Identities=15%  Similarity=0.059  Sum_probs=113.6

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--CCHHHHHHHHHHHHH
Q 045242            8 YIRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPK--MTLSIFVKILLLGLL   85 (243)
Q Consensus         8 ~~~~~~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~   85 (243)
                      .+..+|-++++.+++++|.+.+..+... ++.|+.++..+-.+.+.++..+.....+++....  ++++....+...++ 
T Consensus       164 ~~~i~GDll~l~~a~lya~~nV~~E~~v-~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~-  241 (334)
T PF06027_consen  164 SNPILGDLLALLGAILYAVSNVLEEKLV-KKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYAL-  241 (334)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHhc-ccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHH-
Confidence            3567899999999999999999999985 4589999999888999998888777776655433  34444443333333 


Q ss_pred             HHHHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHhCC
Q 045242           86 EPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGP  159 (243)
Q Consensus        86 ~~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~  159 (243)
                      .....+.+.-..++.++++...+=.-+..+++++.+.+++|+++++..      ++|.++.++|.++....+++
T Consensus       242 ~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly------~~af~lIiiG~vvy~~~~~~  309 (334)
T PF06027_consen  242 CLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLY------ILAFALIIIGFVVYNLAESP  309 (334)
T ss_pred             HHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHH------HHHHHHHHHHhheEEccCCc
Confidence            335666677788889999887776678899999999999999999986      99999999999998654443

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.56  E-value=5e-07  Score=66.19  Aligned_cols=71  Identities=18%  Similarity=0.154  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHH
Q 045242           78 KILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMT  154 (243)
Q Consensus        78 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~  154 (243)
                      .....++++++..+.++..++++.|.+.+..+.++.|+++.+++++++|||+++++      ++|+.+++.|++++.
T Consensus        38 ~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~------~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         38 LWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRH------WCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHh
Confidence            34445557778999999999999999999998889999999999999999999996      999999999999885

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=98.46  E-value=7.9e-06  Score=68.77  Aligned_cols=169  Identities=19%  Similarity=0.216  Sum_probs=119.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCC---CCCCCHHHHHHHH-HHHHHHHHHHHHHHHHhhcccChhhhhhhccchhHH
Q 045242           41 PHVFAVYRHAVATIVVAPFALILDRKV---RPKMTLSIFVKIL-LLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAF  116 (243)
Q Consensus        41 ~~~~~~~r~~~~~i~l~~~~~~~~~~~---~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~  116 (243)
                      |..++..+..+-..+.......++++.   +...+|++.++-+ -.|+.+ ++.-.+-+.+++|++.+.-+..-+..++|
T Consensus        45 PLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalat-a~DIGLSN~sl~yVtlSlYTM~KSSsi~F  123 (349)
T KOG1443|consen   45 PLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALAT-ALDIGLSNWSLEYVTLSLYTMTKSSSILF  123 (349)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhh-hcccccccceeeeeeeeeeeeccccHHHH
Confidence            788888877765555443322232222   2356777655444 445554 89999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHhCCccCCCCCCCccCcCCCCCCCCCcchHHHHHHHHHHHH
Q 045242          117 AFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQESTSNSSVQSPIKGALMITIGCFS  196 (243)
Q Consensus       117 ~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~llaal~  196 (243)
                      ..+.+..+.-||++|.-      ..-+.+..+|+.+.+ .+                     +.+-+..|..+.+++.++
T Consensus       124 IllFs~if~lEk~~w~L------~l~v~lI~~Glflft-~K---------------------sTqf~i~Gf~lv~~aS~~  175 (349)
T KOG1443|consen  124 ILLFSLIFKLEKFRWAL------VLIVLLIAVGLFLFT-YK---------------------STQFNIEGFFLVLAASLL  175 (349)
T ss_pred             HHHHHHHHHhHHHHHHH------HHHHHHHhhheeEEE-ec---------------------ccceeehhHHHHHHHHHh
Confidence            99999999999999984      555666666666665 22                     234456788887777776


Q ss_pred             HHHHHHHHHHHHhcCC----chhHHHHHHHHHHHHHHHHHHHHhcc
Q 045242          197 WAGFMVLQAITLKSYP----TELSLTALICLMGTIEGTIVALFLER  238 (243)
Q Consensus       197 ~a~~~v~~k~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (243)
                      -++--.+.++.+++.|    +|........-...+.++|..+.+|+
T Consensus       176 sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG  221 (349)
T KOG1443|consen  176 SGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEG  221 (349)
T ss_pred             hhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcc
Confidence            6665555555555532    67888888777888888888888887

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.40  E-value=8e-06  Score=61.36  Aligned_cols=118  Identities=14%  Similarity=0.153  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 045242           12 KPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTIDQ   91 (243)
Q Consensus        12 ~~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   91 (243)
                      .++++++++.++-+..-++.|..+++ .+....... . .      ..... .      .+   ....+..|+..+.+++
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~-~-~------~~~~~-~------~~---p~~~i~lgl~~~~la~   62 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWD-F-I------AALLA-F------GL---ALRAVLLGLAGYALSM   62 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhH-H-H------HHHHH-H------hc---cHHHHHHHHHHHHHHH
Confidence            36788888888888999999998644 433222111 1 0      00000 0      01   1235778888899999


Q ss_pred             HHHHHhhcccChhhhhhhccchhHHHHHHHHH--HhhccccccccccccchhHHHHHHHHHHHHH
Q 045242           92 NLFYTGMKYTTATFTTAMANVLPAFAFLMAWI--IRLEKVNFRKFHSWAKVFGTIVTVGGAMFMT  154 (243)
Q Consensus        92 ~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~--~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~  154 (243)
                      .+|.+++++.|++.+..+.+..+.++.+.++.  ++||++++.+      ++|+++.++|++++.
T Consensus        63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~------~iGi~lIi~GV~lv~  121 (129)
T PRK02971         63 LCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKK------TLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHhc
Confidence            99999999999999999989888888888885  8999999996      999999999999985

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=98.26  E-value=8.1e-05  Score=62.12  Aligned_cols=196  Identities=20%  Similarity=0.195  Sum_probs=138.3

Q ss_pred             HHHHHHHHHHHHHHHHh---CCC----ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-------------CCHHHHHHH
Q 045242           20 LQFGYAGMSIFSKFALN---KGM----SPHVFAVYRHAVATIVVAPFALILDRKVRPK-------------MTLSIFVKI   79 (243)
Q Consensus        20 a~~~~a~~~~~~k~~~~---~~~----~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~-------------~~~~~~~~~   79 (243)
                      -.+.-+.+.+++|++-+   ++-    +|...+..-|+--+.++..+.+++.|.+.+.             .+.+ ....
T Consensus        11 mvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~-p~lf   89 (372)
T KOG3912|consen   11 MVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFN-PVLF   89 (372)
T ss_pred             hhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCC-ccee
Confidence            33445678888888731   122    3555555555555566666665554432110             0111 1222


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHhCC
Q 045242           80 LLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGP  159 (243)
Q Consensus        80 ~~~g~~~~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~  159 (243)
                      +.-+++. ..+..+.|.|+.+++++.-..+-...-+|+.+++.-+++++++.+|      |.|+....+|+.++...+  
T Consensus        90 l~Pal~D-i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~q------Wl~i~fv~lGlviVg~~d--  160 (372)
T KOG3912|consen   90 LPPALCD-IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQ------WLGILFVSLGLVIVGSLD--  160 (372)
T ss_pred             cChHHHH-HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhh------HHHHHHHHhhhheeeeee--
Confidence            3345555 7788889999999999999999999999999999999999999997      999999999999885211  


Q ss_pred             ccCCCCCCCccCcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHHHHH
Q 045242          160 VLDLPWTNHNYHQESTSNSSVQSPIKGALMITIGCFSWAGFMVLQAITLKSYP-TELSLTALICLMGTIEGTIVALF  235 (243)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~llaal~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  235 (243)
                      ..    ..++      +..+..+...|+.+.+.|-+.-|...+.-.|..++.. +|.....|+.++|.+.+..++..
T Consensus       161 ~~----~~~~------p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~  227 (372)
T KOG3912|consen  161 VH----LVTD------PYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIP  227 (372)
T ss_pred             cc----cccC------CccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHH
Confidence            00    0001      1223456789999999999999999999988887753 68999999999997776665544

>PRK13499 rhamnose-proton symporter; Provisional

Probab=98.08  E-value=0.001  Score=58.03  Aligned_cols=178  Identities=13%  Similarity=0.072  Sum_probs=114.9

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH--HHHhhc---CCCCCCCHHHHHHHHHHH
Q 045242            9 IRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPF--ALILDR---KVRPKMTLSIFVKILLLG   83 (243)
Q Consensus         9 ~~~~~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~--~~~~~~---~~~~~~~~~~~~~~~~~g   83 (243)
                      +-..|++.++++.++||..++..|.. + ..+-..+-....+++ -++.|+  .....+   ......+.+.+...++.|
T Consensus         4 ~~~~G~~~~~i~~~~~GS~~~p~K~~-k-~w~wE~~W~v~gi~~-wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G   80 (345)
T PRK13499          4 AIILGIIWHLIGGASSGSFYAPFKKV-K-KWSWETMWSVGGIFS-WLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFG   80 (345)
T ss_pred             hhHHHHHHHHHHHHHhhccccccccc-C-CCchhHHHHHHHHHH-HHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHH
Confidence            45679999999999999999999995 3 344222111111111 111221  111111   112235667677777777


Q ss_pred             HHHHHHHHHHHHHhhcccChhhhhhhc-cchhHHHHHHHHHHhhccc---cccccccccchhHHHHHHHHHHHHHHHhCC
Q 045242           84 LLEPTIDQNLFYTGMKYTTATFTTAMA-NVLPAFAFLMAWIIRLEKV---NFRKFHSWAKVFGTIVTVGGAMFMTLIKGP  159 (243)
Q Consensus        84 ~~~~~~~~~~~~~~l~~~~~~~a~~i~-~~~Pi~~~il~~~~~~e~~---~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~  159 (243)
                      ++- ..++..++.++++.+.+.+..+. .++-+...++..++++|=.   +-.+  -..-..|++++++|+.+......-
T Consensus        81 ~~W-~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~liliGi~l~s~Ag~~  157 (345)
T PRK13499         81 ALW-GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVALIGVAIVGRAGQL  157 (345)
T ss_pred             HHH-HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccch--HHHHHHHHHHHHHHHHHHHHhhhh
Confidence            776 99999999999999999987655 5888999999998988633   2111  112478888999999998742110


Q ss_pred             ccCCCCCCCccCcCCCCCCCCCcchHHHHHHHHHHHHHHHHH
Q 045242          160 VLDLPWTNHNYHQESTSNSSVQSPIKGALMITIGCFSWAGFM  201 (243)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~llaal~~a~~~  201 (243)
                       .+     .+..   ++...+.+...|.+.++++.+.+++|.
T Consensus       158 -k~-----~~~~---~~~~~~~~~~KGi~ialisgi~~~~f~  190 (345)
T PRK13499        158 -KE-----RKMG---IKKAEEFNLKKGLILAVMSGIFSACFS  190 (345)
T ss_pred             -cc-----cccc---cccccccchHhHHHHHHHHHHHHHHHH
Confidence             00     0000   000224567899999999999999999

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.07  E-value=0.00031  Score=59.06  Aligned_cols=117  Identities=15%  Similarity=0.131  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhhcc-chhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHH
Q 045242           73 LSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMAN-VLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAM  151 (243)
Q Consensus        73 ~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~i~~-~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~  151 (243)
                      .+.+...++.|++- .+++...+.+.++.+++++..+.. ++-+.+.+.+.++++|--+..+  --.-..++++.++|++
T Consensus        42 ~~~~~~~~lsG~~W-~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~--~~~G~~Al~liiiGv~  118 (269)
T PF06800_consen   42 GTSFIVAFLSGAFW-AIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQ--KIIGFLALVLIIIGVI  118 (269)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcch--HHHHHHHHHHHHHHHH
Confidence            36677778888886 999999999999999999998775 6677799999999999777664  0011346677778887


Q ss_pred             HHHHHhCCccCCCCCCCccCcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 045242          152 FMTLIKGPVLDLPWTNHNYHQESTSNSSVQSPIKGALMITIGCFSWAGFMVLQAI  206 (243)
Q Consensus       152 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~llaal~~a~~~v~~k~  206 (243)
                      +....++.              ++..++..+...|....+++.+.|..|.+..|.
T Consensus       119 lts~~~~~--------------~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~  159 (269)
T PF06800_consen  119 LTSYQDKK--------------SDKSSSKSNMKKGILALLISTIGYWIYSVIPKA  159 (269)
T ss_pred             Hhcccccc--------------ccccccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence            77632221              001122445678999999999999999999776

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.06  E-value=5.4e-05  Score=63.57  Aligned_cols=118  Identities=18%  Similarity=0.093  Sum_probs=89.1

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHH
Q 045242            8 YIRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEP   87 (243)
Q Consensus         8 ~~~~~~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   87 (243)
                      .+..|++..++++.+.+..+..+.|..   +.|+.+..+-+.+--.+.-..+.... ++   +...+..++-...|++- 
T Consensus       134 ~~~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPqaiGm~i~a~i~~~~~-~~---~~~~k~~~~nil~G~~w-  205 (269)
T PF06800_consen  134 SNMKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQAIGMLIGAFIFNLFS-KK---PFFEKKSWKNILTGLIW-  205 (269)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHHHHHHHHHHHHHhhcc-cc---cccccchHHhhHHHHHH-
Confidence            355789999999999999999998886   48888887766443333333322222 11   12223344556667775 


Q ss_pred             HHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccc
Q 045242           88 TIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRK  133 (243)
Q Consensus        88 ~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~  133 (243)
                      ..++.+++.+.+..+.+.+-.+..+.++++.+-+.+++||+-++++
T Consensus       206 ~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke  251 (269)
T PF06800_consen  206 GIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKE  251 (269)
T ss_pred             HHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhh
Confidence            8999999999999999999999999999999999999999988775

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.96  E-value=0.0002  Score=61.71  Aligned_cols=136  Identities=15%  Similarity=0.188  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhh--cCC----CCCCCHHHHHHHHHHHHH
Q 045242           13 PFLAVILLQFGYAGMSIFSKFALN-KGMSPHVFAVYRHAVATIVVAPFALILD--RKV----RPKMTLSIFVKILLLGLL   85 (243)
Q Consensus        13 ~~~~~~~a~~~~a~~~~~~k~~~~-~~~~~~~~~~~r~~~~~i~l~~~~~~~~--~~~----~~~~~~~~~~~~~~~g~~   85 (243)
                      |+++++++.++-|...+..+..++ .+.++.+..++-...+.++..+......  .-.    .....+..+..++..++.
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~  234 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT  234 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence            999999999999999999998874 3688999999999999998887766521  110    001122345555666666


Q ss_pred             HHHHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHH
Q 045242           86 EPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTL  155 (243)
Q Consensus        86 ~~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~  155 (243)
                      + ..++.+.+...++.++...+++..+--+++.+++.+++++++++.+      |.|+++.+.|..+-..
T Consensus       235 ~-~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~------~~G~~lv~~g~~~~~~  297 (303)
T PF08449_consen  235 G-ALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQ------WIGIVLVFAGIFLYSY  297 (303)
T ss_pred             H-HHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHH------HHHHHHhHHHHHHHHH
Confidence            6 7788888888999999999999999999999999999999999997      9999999999998863

; GO: 0055085 transmembrane transport

>TIGR00688 rarD rarD protein

Probab=97.92  E-value=0.00029  Score=59.00  Aligned_cols=106  Identities=13%  Similarity=0.192  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-CCHHHHHHHHHHHHHHHHHHHHH
Q 045242           15 LAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPK-MTLSIFVKILLLGLLEPTIDQNL   93 (243)
Q Consensus        15 ~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~   93 (243)
                      ...+.++++|+.+.+..|.. .+ .++......... ...+..+............ ...++|...+..|++ +.+++.+
T Consensus       149 ~~~l~aa~~~a~~~i~~~~~-~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-t~i~~~l  224 (256)
T TIGR00688       149 WEALVLAFSFTAYGLIRKAL-KN-TDLAGFCLETLS-LMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLI-TGTPLLA  224 (256)
T ss_pred             HHHHHHHHHHHHHHHHHhhc-CC-CCcchHHHHHHH-HHHHHHHHHHHhccCcccccCchhHHHHHHHHHHH-HHHHHHH
Confidence            35678899999999999987 33 333332222211 1112221111111111111 123478888888887 5899999


Q ss_pred             HHHhhcccChhhhhhhccchhHHHHHHHHHH
Q 045242           94 FYTGMKYTTATFTTAMANVLPAFAFLMAWII  124 (243)
Q Consensus        94 ~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~  124 (243)
                      +++++++.+++.++.+.+++|+++.+++.+.
T Consensus       225 ~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       225 FVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999998754

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=97.84  E-value=3.9e-05  Score=60.87  Aligned_cols=98  Identities=20%  Similarity=0.258  Sum_probs=85.9

Q ss_pred             HHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHhCCccCCCCCC
Q 045242           88 TIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTN  167 (243)
Q Consensus        88 ~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~  167 (243)
                      +..++.|..+++..++++++.++...--++.+++++.++||+.-.+      +.+.++++.|++++...+          
T Consensus        64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~k------IlaailAI~GiVmiay~D----------  127 (290)
T KOG4314|consen   64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFK------ILAAILAIGGIVMIAYAD----------  127 (290)
T ss_pred             ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhh------HHHHHHHhCcEEEEEecc----------
Confidence            6778899999999999999999999999999999999999999885      999999999999885211          


Q ss_pred             CccCcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 045242          168 HNYHQESTSNSSVQSPIKGALMITIGCFSWAGFMVLQAITLKSY  211 (243)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~G~~~~llaal~~a~~~v~~k~~~~~~  211 (243)
                                +.......|..++..++..-|.|-++-|+...+.
T Consensus       128 ----------N~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnA  161 (290)
T KOG4314|consen  128 ----------NEHADEIIGIACAVGSAFMAALYKVLFKMFIGNA  161 (290)
T ss_pred             ----------chhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence                      1234457899999999999999999999988764

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=97.74  E-value=0.0023  Score=53.92  Aligned_cols=127  Identities=14%  Similarity=0.147  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 045242           18 ILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKV--RPKMTLSIFVKILLLGLLEPTIDQNLFY   95 (243)
Q Consensus        18 ~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~   95 (243)
                      +.-++.|+.++..-|..   ++|+.+=...-...-.+..+...+......  ...-+.+.+..+...|.+. ++...++.
T Consensus       154 l~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vT-avpL~lf~  229 (293)
T COG2962         154 LALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVT-AVPLLLFA  229 (293)
T ss_pred             HHHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHH-HHHHHHHH
Confidence            44567788888888877   478777776666665555554444433222  1113556677888888886 99999999


Q ss_pred             HhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHH
Q 045242           96 TGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMT  154 (243)
Q Consensus        96 ~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~  154 (243)
                      .|-+++|-+...++.|..|....+++.++++|+++..+      ..+-+..-+|..+..
T Consensus       230 ~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~------~~~F~~IW~aL~l~~  282 (293)
T COG2962         230 AAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQ------LVTFAFIWLALALFS  282 (293)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999996      999999888888886

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.66  E-value=0.0003  Score=58.61  Aligned_cols=172  Identities=13%  Similarity=0.113  Sum_probs=117.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhcCC----CC--CCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhhccch
Q 045242           40 SPHVFAVYRHAVATIVVAPFALILDRKV----RP--KMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVL  113 (243)
Q Consensus        40 ~~~~~~~~r~~~~~i~l~~~~~~~~~~~----~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~i~~~~  113 (243)
                      .|..++.++.++...+.+.+.....+-.    .+  +++.+......-+.++- .+...+-.++++|.+++---+=-++.
T Consensus        60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVf-i~mI~fnnlcL~yVgVaFYyvgRsLt  138 (347)
T KOG1442|consen   60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVF-ILMISFNNLCLKYVGVAFYYVGRSLT  138 (347)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhhee-eeehhccceehhhcceEEEEeccchh
Confidence            5889999999998877776554432211    11  23334344444444443 44455567888888887766666788


Q ss_pred             hHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHhCCccCCCCCCCccCcCCCCCCCCCcchHHHHHHHHH
Q 045242          114 PAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQESTSNSSVQSPIKGALMITIG  193 (243)
Q Consensus       114 Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~lla  193 (243)
                      -+|+++++++++|+|-+...      ..+..+.+.|-.+=+ .++                  +..+.-...|.+++..|
T Consensus       139 tvFtVlLtyvllkqkTs~~~------~~~C~lIi~GF~lGv-dqE------------------~~~~~ls~~GvifGVla  193 (347)
T KOG1442|consen  139 TVFTVLLTYVLLKQKTSFFA------LGCCLLIILGFGLGV-DQE------------------GSTGTLSWIGVIFGVLA  193 (347)
T ss_pred             hhHHHHhHHhhccccccccc------ceeehhheehheecc-ccc------------------cccCccchhhhHHHHHH
Confidence            89999999999999999874      555555444443332 111                  12234467899999999


Q ss_pred             HHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHHHHHhc
Q 045242          194 CFSWAGFMVLQAITLKSYP-TELSLTALICLMGTIEGTIVALFLE  237 (243)
Q Consensus       194 al~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  237 (243)
                      .++-|+..+..||...... .-...++|..+.+.+.++|...+.+
T Consensus       194 Sl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lng  238 (347)
T KOG1442|consen  194 SLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNG  238 (347)
T ss_pred             HHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcc
Confidence            9999999999997665433 3567888999999999998886643

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=97.63  E-value=2.5e-05  Score=64.70  Aligned_cols=137  Identities=16%  Similarity=0.107  Sum_probs=110.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 045242           10 RAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTI   89 (243)
Q Consensus        10 ~~~~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   89 (243)
                      ..++....+.+++.-+..+++.|+. .++.+......+-.+++.+.-...+....+-+.+ -.+++++.+..+|++| .+
T Consensus       189 ~~~gt~aai~s~lf~asvyIilR~i-Gk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP-~cgkdr~l~~~lGvfg-fi  265 (346)
T KOG4510|consen  189 DIPGTVAAISSVLFGASVYIILRYI-GKNAHAIMSVSYFSLITLVVSLIGCASIGAVQLP-HCGKDRWLFVNLGVFG-FI  265 (346)
T ss_pred             cCCchHHHHHhHhhhhhHHHHHHHh-hccccEEEEehHHHHHHHHHHHHHHhhccceecC-ccccceEEEEEehhhh-hH
Confidence            4456777777878788889999988 6677777666666666666655544433333333 3567788889999999 99


Q ss_pred             HHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHH
Q 045242           90 DQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTL  155 (243)
Q Consensus        90 ~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~  155 (243)
                      ++.+.-.|+|...++..+++.++.-+++.+...++++|-+++..      |.|+++.+...+.+..
T Consensus       266 gQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws------~~Ga~~vvsS~v~~a~  325 (346)
T KOG4510|consen  266 GQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWS------WVGAVMVVSSTVWVAL  325 (346)
T ss_pred             HHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHH------hhceeeeehhHHHHHH
Confidence            99999999999999999999999999999999999999999996      9999988888777753

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.60  E-value=0.00041  Score=59.69  Aligned_cols=117  Identities=14%  Similarity=0.163  Sum_probs=85.9

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHHHH
Q 045242            9 IRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKV-RPKMTLSIFVKILLLGLLEP   87 (243)
Q Consensus         9 ~~~~~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~   87 (243)
                      +..-|..+.++++++-+.+..+.|....+ .+.   .-.               ++++. ++-.+++.|  .  .|+...
T Consensus         4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r-~~~---~~~---------------~~~~~~~~~l~~~~W--~--~G~~~~   60 (300)
T PF05653_consen    4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLR-LPR---GSL---------------RAGSGGRSYLRRPLW--W--IGLLLM   60 (300)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhc---ccc---------------cccchhhHHHhhHHH--H--HHHHHH
Confidence            55679999999999999999999987432 110   000               00000 011122222  2  233344


Q ss_pred             HHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHH
Q 045242           88 TIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMT  154 (243)
Q Consensus        88 ~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~  154 (243)
                      .++..+.+.++.+.|++..+.+....-++.++++..++|||+++++      +.|..+++.|..++.
T Consensus        61 ~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~------~~G~~l~i~G~~liv  121 (300)
T PF05653_consen   61 VLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRD------IVGCALIILGSVLIV  121 (300)
T ss_pred             hcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhH------HhhHHHHHhhheeeE
Confidence            6677888999999999999999999999999999999999999997      999999999999885

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=97.59  E-value=0.00064  Score=59.01  Aligned_cols=143  Identities=14%  Similarity=0.152  Sum_probs=116.6

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHHHHHHHHhhc---CCCCCCCHHHHHHHHHH
Q 045242            9 IRAKPFLAVILLQFGYAGMSIFSKFALNK---GMSPHVFAVYRHAVATIVVAPFALILDR---KVRPKMTLSIFVKILLL   82 (243)
Q Consensus         9 ~~~~~~~~~~~a~~~~a~~~~~~k~~~~~---~~~~~~~~~~r~~~~~i~l~~~~~~~~~---~~~~~~~~~~~~~~~~~   82 (243)
                      +...|-++.+++++++|.+.++.|.-.++   +.|-..+-.+-.++..++++|..+....   .+..-++..+...++..
T Consensus       244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~  323 (416)
T KOG2765|consen  244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFN  323 (416)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHh
Confidence            34679999999999999999999987532   3677788888888888888876665432   22233444556778888


Q ss_pred             HHHHHHHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHh
Q 045242           83 GLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIK  157 (243)
Q Consensus        83 g~~~~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~  157 (243)
                      +++++.+.-++|..|+-.+++-.+++-..++-..+++...++.+.++++..      ++|.+.+++|-+++...+
T Consensus       324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~------iiGsi~Ifv~Fv~vn~~~  392 (416)
T KOG2765|consen  324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALY------IIGSIPIFVGFVIVNISS  392 (416)
T ss_pred             hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHhheeccc
Confidence            999999999999999999999999987777777888999999999999997      999999999999997444

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.38  E-value=0.0036  Score=47.56  Aligned_cols=129  Identities=18%  Similarity=0.152  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 045242           15 LAVILLQFGYAGMSIFSKFALNKGMS-PHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTIDQNL   93 (243)
Q Consensus        15 ~~~~~a~~~~a~~~~~~k~~~~~~~~-~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   93 (243)
                      ++.+++-..-+....+.-.. .+... |..-++.-+..+.+.+..+....+++.....+.-.| +...-|+++ ...-.+
T Consensus         4 lla~~aG~~i~~q~~~N~~L-~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~-w~~lGG~lG-~~~V~~   80 (138)
T PF04657_consen    4 LLALLAGALIALQAAFNGQL-GKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPW-WAYLGGLLG-VFFVLS   80 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCCh-HHhccHHHH-HHHHHH
Confidence            44555555555555555554 34454 999999999999999988776665543322222222 334467777 888888


Q ss_pred             HHHhhcccChhhhhhhcc-chhHHHHHHHHH----HhhccccccccccccchhHHHHHHHHHHH
Q 045242           94 FYTGMKYTTATFTTAMAN-VLPAFAFLMAWI----IRLEKVNFRKFHSWAKVFGTIVTVGGAMF  152 (243)
Q Consensus        94 ~~~~l~~~~~~~a~~i~~-~~Pi~~~il~~~----~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l  152 (243)
                      ..+.+.+.+++.+..+.- -+-+...+++.+    .-+++++++      |+.|+.+.++|+.+
T Consensus        81 ~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~------r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   81 NIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLR------RILGLALMIAGVIL  138 (138)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHH------HHHHHHHHHHHHhC
Confidence            999999999999877554 455666666664    234566666      59999999999863

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.37  E-value=0.033  Score=47.32  Aligned_cols=173  Identities=16%  Similarity=0.095  Sum_probs=121.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhhccchhHHHHH
Q 045242           40 SPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFL  119 (243)
Q Consensus        40 ~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~i  119 (243)
                      +|..+.+.+-+.+.++-....  ..++.. ...++-|+.+-..++.. .+...+-+.+++|.+=-.-.+--+.=-+=+++
T Consensus        50 ~~~fL~~~q~l~~~~~s~~~l--~~~k~~-~~~~apl~~y~~is~tn-~~s~~~~yeaLKyvSyPtq~LaKscKmIPVml  125 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSYAML--KWWKKE-LSGVAPLYKYSLISFTN-TLSSWCGYEALKYVSYPTQTLAKSCKMIPVML  125 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHHH--hccccc-CCCCCchhHHhHHHHHh-hcchHHHHHHHHhccchHHHHHHHhhhhHHHH
Confidence            678888888888777765333  333332 22333366777777776 88999999999998755554444433344567


Q ss_pred             HHHHHhhccccccccccccchhHHHHHHHHHHHHHHHhCCccCCCCCCCccCcCCCCCCCCCcchHHHHHHHHHHHHHHH
Q 045242          120 MAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQESTSNSSVQSPIKGALMITIGCFSWAG  199 (243)
Q Consensus       120 l~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~llaal~~a~  199 (243)
                      ++.++.+.|.++.+      ...+.++-.|+.+..+.+.+             .+.+.....+...|..+....-+.=++
T Consensus       126 mg~Lvy~~ky~~~e------Yl~~~LIs~GvsiF~l~~~s-------------~s~~~~g~~ns~~G~~Ll~~~L~fDgf  186 (327)
T KOG1581|consen  126 MGTLVYGRKYSSFE------YLVAFLISLGVSIFSLFPNS-------------DSSSKSGRENSPIGILLLFGYLLFDGF  186 (327)
T ss_pred             HHHHHhcCccCcHH------HHHHHHHHhheeeEEEecCC-------------CCccccCCCCchHhHHHHHHHHHHHhh
Confidence            88899999999986      77777777787777544321             011223345678999998888888888


Q ss_pred             HHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHHHHH
Q 045242          200 FMVLQAITLKSYP-TELSLTALICLMGTIEGTIVALF  235 (243)
Q Consensus       200 ~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  235 (243)
                      -+..+.++.++.. ++..++.+..+++++....-.+.
T Consensus       187 Tn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~  223 (327)
T KOG1581|consen  187 TNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLIL  223 (327)
T ss_pred             HHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhc
Confidence            8889999888754 67888889999988888766443

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=97.30  E-value=0.001  Score=57.40  Aligned_cols=138  Identities=16%  Similarity=0.272  Sum_probs=111.0

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHHHH-HHHHHhhcCCC-----CCCCHHHHHHH
Q 045242            9 IRAKPFLAVILLQFGYAGMSIFSKFALN---KGMSPHVFAVYRHAVATIVVA-PFALILDRKVR-----PKMTLSIFVKI   79 (243)
Q Consensus         9 ~~~~~~~~~~~a~~~~a~~~~~~k~~~~---~~~~~~~~~~~r~~~~~i~l~-~~~~~~~~~~~-----~~~~~~~~~~~   79 (243)
                      -+..|......+.+..+.-.++.|..+.   ++.|+.....+.--.+.++++ |+....+....     ...+.. ....
T Consensus       160 fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~  238 (316)
T KOG1441|consen  160 FNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLIL  238 (316)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHH
Confidence            4678999999999999999999999983   358999999999999999999 98776554332     133444 3344


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHH
Q 045242           80 LLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMT  154 (243)
Q Consensus        80 ~~~g~~~~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~  154 (243)
                      .+.+++. ...+..-|..+.+++|.+-++...+==++++..++++++|++++.+      ..|..+++.|+.+-.
T Consensus       239 ~~~sv~~-f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n------~~G~~iai~Gv~~Y~  306 (316)
T KOG1441|consen  239 LLNSVLA-FLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLN------ALGYAIAILGVFLYS  306 (316)
T ss_pred             HHHHHHH-HHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhh------HHHHHHHHHHHHHHH
Confidence            4445554 7778888999999999888887777777777888999999999998      999999999999886

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.25  E-value=0.02  Score=50.03  Aligned_cols=144  Identities=13%  Similarity=0.058  Sum_probs=94.9

Q ss_pred             HhhHHHHHHHHHHHHHHHHH-------HHHHHHHhCCCChHHHHHHHHH---HHHHHHHH-HHHHhh-c-CCC-----CC
Q 045242            9 IRAKPFLAVILLQFGYAGMS-------IFSKFALNKGMSPHVFAVYRHA---VATIVVAP-FALILD-R-KVR-----PK   70 (243)
Q Consensus         9 ~~~~~~~~~~~a~~~~a~~~-------~~~k~~~~~~~~~~~~~~~r~~---~~~i~l~~-~~~~~~-~-~~~-----~~   70 (243)
                      +..||++.++++.+..+.++       ...+.+...+.++.....-++.   +++.+.-+ ++..+. | +..     ..
T Consensus       171 ~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~  250 (345)
T PRK13499        171 NLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFS  250 (345)
T ss_pred             chHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhcc
Confidence            55789999999999999888       6666544456888877777776   55544332 222221 1 111     11


Q ss_pred             CC----HHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhh---hccchh-HHHHHHHHHHhhccccccccccccchhH
Q 045242           71 MT----LSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTA---MANVLP-AFAFLMAWIIRLEKVNFRKFHSWAKVFG  142 (243)
Q Consensus        71 ~~----~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~---i~~~~P-i~~~il~~~~~~e~~~~~~~~~~~~~~g  142 (243)
                      .+    .++...-.+.|+.- ...+.++..+.+..+.+.+.+   +....+ ++..+-+. ++||+-+..+|..+.-++|
T Consensus       251 ~~~~~~~~n~l~~~l~G~~W-~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G  328 (345)
T PRK13499        251 LAKPLLITNVLLSALAGVMW-YLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLG  328 (345)
T ss_pred             ccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHH
Confidence            12    23333335555554 677778888888887766555   553444 66666666 6999999777777888999


Q ss_pred             HHHHHHHHHHHH
Q 045242          143 TIVTVGGAMFMT  154 (243)
Q Consensus       143 ~~l~~~Gv~l~~  154 (243)
                      .++.++|..++.
T Consensus       329 ~vliI~g~~lig  340 (345)
T PRK13499        329 CVVIILAANIVG  340 (345)
T ss_pred             HHHHHHHHHHHh
Confidence            999999999886

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.22  E-value=0.0015  Score=48.33  Aligned_cols=68  Identities=16%  Similarity=0.205  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHHHhhcccChhhhhhh-ccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHH
Q 045242           81 LLGLLEPTIDQNLFYTGMKYTTATFTTAM-ANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMT  154 (243)
Q Consensus        81 ~~g~~~~~~~~~~~~~~l~~~~~~~a~~i-~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~  154 (243)
                      ...+.++...+.++..++++.|.+.+=.+ ....-+.+++++.++++|++++.+      +.|+.+.++|++.+-
T Consensus        34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~------~~gi~lIi~GVi~l~  102 (120)
T PRK10452         34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMK------IAGLTTLVAGIVLIK  102 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHhh
Confidence            34556668899999999999999887654 467888999999999999999996      999999999998885

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.19  E-value=0.0022  Score=46.74  Aligned_cols=67  Identities=12%  Similarity=0.235  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHhhcccChhhhhhh-ccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHH
Q 045242           82 LGLLEPTIDQNLFYTGMKYTTATFTTAM-ANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMT  154 (243)
Q Consensus        82 ~g~~~~~~~~~~~~~~l~~~~~~~a~~i-~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~  154 (243)
                      ..+.++...+.++..++++.|.+.+=.+ ....-+.+++.+++++||++++.+      +.|+.+.+.|++.+.
T Consensus        35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~------~~gi~lIi~GVi~l~  102 (110)
T PRK09541         35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLVIN  102 (110)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHh
Confidence            3455668889999999999999886554 557788889999999999999996      999999999999995

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.18  E-value=0.012  Score=42.84  Aligned_cols=64  Identities=13%  Similarity=0.167  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHhhcccChhhhh-hhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHH
Q 045242           84 LLEPTIDQNLFYTGMKYTTATFTT-AMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFM  153 (243)
Q Consensus        84 ~~~~~~~~~~~~~~l~~~~~~~a~-~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~  153 (243)
                      +.++...+.+...++|+.|.+.+= +....--+.+++.+++++||++++.+      +.|+.+.+.|++.+
T Consensus        42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~------~~gi~lIi~GVi~l  106 (109)
T PRK10650         42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKG------WIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHh
Confidence            445578899999999999998864 45567788899999999999999996      99999999999886

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=97.03  E-value=0.00013  Score=59.83  Aligned_cols=189  Identities=14%  Similarity=0.196  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 045242           13 PFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTIDQN   92 (243)
Q Consensus        13 ~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   92 (243)
                      .++..++-++.||+...+....  . =+|.+-+.---+-+.++.+. .++..   .+..+.+.+..-+..|.+- .+++.
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~--G-G~p~qQ~lGtT~GALifaii-v~~~~---~p~~T~~~~iv~~isG~~W-s~GQ~   74 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKF--G-GKPYQQTLGTTLGALIFAII-VFLFV---SPELTLTIFIVGFISGAFW-SFGQA   74 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeec--C-CChhHhhhhccHHHHHHHHH-Hheee---cCccchhhHHHHHHhhhHh-hhhhh
Confidence            4677888999999999888776  3 34444443333333333332 22322   2456777676666667775 89999


Q ss_pred             HHHHhhcccChhhhhhhcc-chhHHHHHHHHHHhhccccccccccccchh---HHHHHHHHHHHHHHHhCCccCCCCCCC
Q 045242           93 LFYTGMKYTTATFTTAMAN-VLPAFAFLMAWIIRLEKVNFRKFHSWAKVF---GTIVTVGGAMFMTLIKGPVLDLPWTNH  168 (243)
Q Consensus        93 ~~~~~l~~~~~~~a~~i~~-~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~---g~~l~~~Gv~l~~~~~~~~~~~~~~~~  168 (243)
                      ..+.+.++.+++++..++. ++-+-+-+.+.+.+||=-+..+     .++   ++++.++|+++....+         ++
T Consensus        75 ~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~-----~IlG~iAliliviG~~lTs~~~---------~~  140 (288)
T COG4975          75 NQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQ-----IILGFIALILIVIGIYLTSKQD---------RN  140 (288)
T ss_pred             hhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchh-----HHHHHHHHHHHHHhheEeeeec---------cc
Confidence            9999999999999998775 7778888888889998666554     222   3334444444443111         11


Q ss_pred             ccCcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 045242          169 NYHQESTSNSSVQSPIKGALMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIE  228 (243)
Q Consensus       169 ~~~~~~~~~~~~~~~~~G~~~~llaal~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~  228 (243)
                      |-+     .++..+...|....+.+.+.|..|.+..+...-+--+.....+..+..+++.
T Consensus       141 nk~-----~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali  195 (288)
T COG4975         141 NKE-----EENPSNLKKGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALI  195 (288)
T ss_pred             ccc-----ccChHhhhhheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHH
Confidence            111     2233446678888788888888888886654422113344444445554443

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.03  E-value=0.0032  Score=45.22  Aligned_cols=66  Identities=11%  Similarity=0.111  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHhhcccChhhh-hhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHH
Q 045242           83 GLLEPTIDQNLFYTGMKYTTATFT-TAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMT  154 (243)
Q Consensus        83 g~~~~~~~~~~~~~~l~~~~~~~a-~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~  154 (243)
                      .++++...+.+...++++.|.+.+ ++....--+.+++.++++++|+++..+      ++++.+.++|++.+-
T Consensus        36 ~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~------~~gl~LiiaGvi~Lk  102 (106)
T COG2076          36 TIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIK------LLGLALILAGVIGLK  102 (106)
T ss_pred             HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHH------HHHHHHHHHHHHHhh
Confidence            444557899999999999999885 456678889999999999999999996      999999999999884

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=96.97  E-value=0.011  Score=48.16  Aligned_cols=185  Identities=14%  Similarity=0.125  Sum_probs=121.3

Q ss_pred             HHHHHHHHhC-CCC-hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhh
Q 045242           28 SIFSKFALNK-GMS-PHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATF  105 (243)
Q Consensus        28 ~~~~k~~~~~-~~~-~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~  105 (243)
                      .+-.|+.++. +++ -+.+.+.|.+...+-+..+-... -.   +.+.++..+.+..+++. ......--.++||.++..
T Consensus        22 TltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~-~~---~fR~t~aK~WfpiSfLL-v~MIyt~SKsLqyL~vpi   96 (309)
T COG5070          22 TLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLR-LV---EFRLTKAKKWFPISFLL-VVMIYTSSKSLQYLAVPI   96 (309)
T ss_pred             HHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHh-Hh---heehhhhhhhcCHHHHH-HHHHHhcccceeeeeeeH
Confidence            3344555422 344 45566667666554444322111 11   12222223333334443 444445568899999999


Q ss_pred             hhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHhCCccCCCCCCCccCcCCCCCCCCCcchH
Q 045242          106 TTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQESTSNSSVQSPIK  185 (243)
Q Consensus       106 a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (243)
                      -+++-++.-+..+..+.+++|.+++..+      ....++.+..-+....++..             .  .....+....
T Consensus        97 YTiFKNltII~iAygEvl~Fgg~vtsl~------l~SFilMvlSS~va~w~D~q-------------~--~~~~~~~lN~  155 (309)
T COG5070          97 YTIFKNLTIILIAYGEVLFFGGRVTSLE------LLSFILMVLSSVVATWGDQQ-------------A--SAFKAQILNP  155 (309)
T ss_pred             HHHhccceeehhHhhHHHHhcCccchhh------HHHHHHHHHHHHHhccchhh-------------H--HHHHhcccCC
Confidence            9999999999999999999999999987      88887777776666421110             0  0111234567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHHHHHhcc
Q 045242          186 GALMITIGCFSWAGFMVLQAITLKSYP-TELSLTALICLMGTIEGTIVALFLER  238 (243)
Q Consensus       186 G~~~~llaal~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (243)
                      |.+|+..-++.-+.|....|+..+-.. .....++|..+.+..+++.+.+++|.
T Consensus       156 GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~ed  209 (309)
T COG5070         156 GYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFED  209 (309)
T ss_pred             ceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhcc
Confidence            999999999999999998887665321 25788899999999999999988765

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.96  E-value=0.0021  Score=46.91  Aligned_cols=110  Identities=14%  Similarity=0.235  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045242           18 ILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTIDQNLFYTG   97 (243)
Q Consensus        18 ~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   97 (243)
                      ++..++||....+.|.. .++.++..-.. |..-....+             -.+++..     ..+...-.+...|++.
T Consensus         2 l~Vg~~WG~Tnpfik~g-~~~~~~~~~~~-~~~~~~~~L-------------l~n~~y~-----ipf~lNq~GSv~f~~~   61 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRG-SSGLEKVKASL-QLLQEIKFL-------------LLNPKYI-----IPFLLNQSGSVLFFLL   61 (113)
T ss_pred             eeehHHhcCchHHHHHH-HhhcCCccchH-HHHHHHHHH-------------HHhHHHH-----HHHHHHHHHHHHHHHH
Confidence            35678999999999998 44454433331 322211110             0122322     2334457788889999


Q ss_pred             hcccChhhhhhhc-cchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHH
Q 045242           98 MKYTTATFTTAMA-NVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFM  153 (243)
Q Consensus        98 l~~~~~~~a~~i~-~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~  153 (243)
                      +...+.+.+..+. ++.=++|++.++++.+|..+++.      ++|+.+.+.|+.+.
T Consensus        62 L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~------~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   62 LGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRT------WLGMALILAGVALC  112 (113)
T ss_pred             HhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhH------HHHHHHHHcCeeee
Confidence            9999999988875 78889999999877777777765      99999999998653

Many members are annotated as potential transmembrane proteins.

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.91  E-value=0.006  Score=44.04  Aligned_cols=65  Identities=11%  Similarity=0.059  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHhhcccChhhhh-hhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHH
Q 045242           84 LLEPTIDQNLFYTGMKYTTATFTT-AMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMT  154 (243)
Q Consensus        84 ~~~~~~~~~~~~~~l~~~~~~~a~-~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~  154 (243)
                      +.++..++.+...++++.|.+.+= +....--+.+++.+.+++||++++.+      +.|+.+.+.|++.+-
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~------~~gi~lIi~GVv~l~  101 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPAR------LLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHhhh
Confidence            555688999999999999998864 45567888999999999999999996      999999999999884

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.74  E-value=0.022  Score=46.77  Aligned_cols=172  Identities=13%  Similarity=0.053  Sum_probs=115.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhhccchhHHHHHH
Q 045242           41 PHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLM  120 (243)
Q Consensus        41 ~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il  120 (243)
                      ...+.++++....++.=.+..+++ +.+. -+.+.+ ....++ ..+.++....+.++|+.|=-...+--+.-|+=+.++
T Consensus        53 alaLVf~qC~~N~vfAkvl~~ir~-~~~~-D~t~~~-~YaAcs-~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMil  128 (337)
T KOG1580|consen   53 ALALVFFQCTANTVFAKVLFLIRK-KTEI-DNTPTK-MYAACS-ASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMIL  128 (337)
T ss_pred             HHHHHHHHHHHHHHHHHhheeecc-cccc-cCCcch-HHHHHH-HHHHHHHHhccchhcccCCcHHHhcccCCCcceeee
Confidence            455666676666665543322222 1211 122222 233333 344788888999999999888888888899999999


Q ss_pred             HHHHhhccccccccccccchhHHHHHHHHHHHHHHHhCCccCCCCCCCccCcCCCCCCCCCcchHHHHHHHHHHHHHHHH
Q 045242          121 AWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQESTSNSSVQSPIKGALMITIGCFSWAGF  200 (243)
Q Consensus       121 ~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~llaal~~a~~  200 (243)
                      +.++.+++.+|++      ....+.+++|+.+.. .++..              .++..+.....|.++.+++--.=+.-
T Consensus       129 GVl~~~KsY~w~k------Y~cVL~IV~GValFm-YK~~K--------------v~g~e~~t~g~GElLL~lSL~mDGlT  187 (337)
T KOG1580|consen  129 GVLFAHKSYHWRK------YCCVLMIVVGVALFM-YKENK--------------VGGAEDKTFGFGELLLILSLAMDGLT  187 (337)
T ss_pred             ehhhhcccccHHH------HHHHHHHHHHHHHhh-ccccc--------------cCCCcccccchHHHHHHHHHHhcccc
Confidence            9999999999885      999999999999985 44210              01233455678999988887777777


Q ss_pred             HHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHHHHHhc
Q 045242          201 MVLQAITLKSYP-TELSLTALICLMGTIEGTIVALFLE  237 (243)
Q Consensus       201 ~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  237 (243)
                      ...+.++-+.+. ..-.++.+..+.+++.+....++.+
T Consensus       188 g~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTG  225 (337)
T KOG1580|consen  188 GSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTG  225 (337)
T ss_pred             hhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehh
Confidence            777777555443 3456777788888877765554443

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.62  E-value=0.006  Score=43.06  Aligned_cols=57  Identities=9%  Similarity=0.024  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHhhcccChhhh-hhhccchhHHHHHHHHHHhhccccccccccccchhHHHH
Q 045242           83 GLLEPTIDQNLFYTGMKYTTATFT-TAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIV  145 (243)
Q Consensus        83 g~~~~~~~~~~~~~~l~~~~~~~a-~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l  145 (243)
                      .+.++..++.++..++++.|.+.+ ++......+.+.+.+.+++||++++.+      +.|+.+
T Consensus        35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~------~~gi~l   92 (93)
T PF00893_consen   35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSK------WLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------Hhheee
Confidence            444568889999999999999998 456678999999999999999999996      888765

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=96.47  E-value=0.18  Score=43.71  Aligned_cols=181  Identities=14%  Similarity=0.113  Sum_probs=117.1

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHh-hcCC----CCCCCHHHHHHHHHHH
Q 045242            9 IRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALIL-DRKV----RPKMTLSIFVKILLLG   83 (243)
Q Consensus         9 ~~~~~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~-~~~~----~~~~~~~~~~~~~~~g   83 (243)
                      +-..|+++..++.++-|..++..|..  ++.+-...-..+.+++ -+..|..... .-++    ....+.+.+.+..+.|
T Consensus         4 ~ii~Gii~h~iGg~~~~sfy~P~kkv--k~WsWEs~Wlv~gi~s-wli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G   80 (344)
T PF06379_consen    4 AIILGIIFHAIGGFASGSFYVPFKKV--KGWSWESYWLVQGIFS-WLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFG   80 (344)
T ss_pred             hHHHHHHHHHHHHHHhhhhccchhhc--CCccHHHHHHHHHHHH-HHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence            55679999999999999999999998  4466555555555554 3444543322 2222    1234556677778888


Q ss_pred             HHHHHHHHHHHHHhhcccChhhhh-hhccchhHHHHHHHHHHhhcccc--ccccccccchhHHHHHHHHHHHHHHHhCCc
Q 045242           84 LLEPTIDQNLFYTGMKYTTATFTT-AMANVLPAFAFLMAWIIRLEKVN--FRKFHSWAKVFGTIVTVGGAMFMTLIKGPV  160 (243)
Q Consensus        84 ~~~~~~~~~~~~~~l~~~~~~~a~-~i~~~~Pi~~~il~~~~~~e~~~--~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~~  160 (243)
                      ++- .++...|=.+++|++.+... +...+.-.+-.++-.++.++ ++  ..++-.+.-+.|++++++|+.+.... |..
T Consensus        81 ~lW-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~-~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A-G~~  157 (344)
T PF06379_consen   81 VLW-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGT-FDELLATPSGQIVLLGVAVCLIGIAICGKA-GSM  157 (344)
T ss_pred             HHH-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCc-ccccccCCCchhhhhHHHHHHHHHHHHhHH-HHh
Confidence            886 88999999999999998754 44456666666665555332 11  11122334599999999999999632 321


Q ss_pred             cCCCCCCCccCcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 045242          161 LDLPWTNHNYHQESTSNSSVQSPIKGALMITIGCFSWAGFMVLQ  204 (243)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~llaal~~a~~~v~~  204 (243)
                      .+     .+..    .+..+.+...|.+.+++|.+.=|+++.-.
T Consensus       158 Ke-----~~~~----~~~~efn~~kGl~iAv~sGv~Sa~fn~g~  192 (344)
T PF06379_consen  158 KE-----KELG----EEAKEFNFKKGLIIAVLSGVMSACFNFGL  192 (344)
T ss_pred             hh-----hhhc----cchhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            11     1111    12234567889999999998777766653

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.46  E-value=0.0016  Score=55.52  Aligned_cols=125  Identities=14%  Similarity=0.179  Sum_probs=90.2

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHH
Q 045242            9 IRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPT   88 (243)
Q Consensus         9 ~~~~~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   88 (243)
                      ++..|..+.+.+.+..|.+.++-|+...+ .          ..     .  .....+..++-.  ++  +.-+.|++...
T Consensus        18 d~~~G~~LaissS~~Ig~sfilkKkgl~r-~----------~~-----~--~~ra~~gg~~yl--~~--~~Ww~G~ltm~   75 (335)
T KOG2922|consen   18 DNIIGLVLAISSSIFIGSSFILKKKGLKR-A----------GA-----S--GLRAGEGGYGYL--KE--PLWWAGMLTMI   75 (335)
T ss_pred             CceeeeeehhhccEEEeeehhhhHHHHHH-H----------hh-----h--cccccCCCcchh--hh--HHHHHHHHHHH
Confidence            56678888999999999999999888543 1          00     0  000011111111  22  23344666667


Q ss_pred             HHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHhCCccC
Q 045242           89 IDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLD  162 (243)
Q Consensus        89 ~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~  162 (243)
                      ++-..-|.+..+.|++..+.+..+.-+..++++..+++||+++..      .+|.+++++|..+++ .++|.++
T Consensus        76 vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g------~lGc~l~v~Gst~iV-~haP~e~  142 (335)
T KOG2922|consen   76 VGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLG------ILGCVLCVVGSTTIV-IHAPKEQ  142 (335)
T ss_pred             HHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhh------hhheeEEecccEEEE-EecCccc
Confidence            788888888999999999999999999999999999999999997      999999999988774 4444443

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.44  E-value=0.037  Score=47.03  Aligned_cols=141  Identities=12%  Similarity=0.120  Sum_probs=111.4

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHhhcCCC-----CCCCHHHHHHHHHH
Q 045242            9 IRAKPFLAVILLQFGYAGMSIFSKFALNK-GMSPHVFAVYRHAVATIVVAPFALILDRKVR-----PKMTLSIFVKILLL   82 (243)
Q Consensus         9 ~~~~~~~~~~~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~   82 (243)
                      +...|+.++...-+.=|+...-.+..+++ ++++.++.+.-.+..++.-..... .....+     .+.+++-++.+++.
T Consensus       169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li-~qg~~~~av~F~~~hp~~~~Di~l~  247 (327)
T KOG1581|consen  169 NSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLI-LQGHLLPAVSFIKEHPDVAFDILLY  247 (327)
T ss_pred             CchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhh-cCCCCchHHHHHHcChhHHHHHHHH
Confidence            45568888877777667777777766543 589999999999998887665422 222211     22455667788888


Q ss_pred             HHHHHHHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHh
Q 045242           83 GLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIK  157 (243)
Q Consensus        83 g~~~~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~  157 (243)
                      ++++ +.++.+.++-++.-++-.-+.+..+=-+++.+++.+.++.++++.|      |.|..+.|.|+.+=.+.+
T Consensus       248 s~~g-avGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q------~~g~~iVFg~i~l~~~~k  315 (327)
T KOG1581|consen  248 STCG-AVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQ------WLGVLIVFGGIFLEILLK  315 (327)
T ss_pred             HHhh-hhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhh------ccCeeeehHHHHHHHHHH
Confidence            9998 9999999999999888888888888899999999999999999998      999999999999876543

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=96.39  E-value=0.061  Score=45.05  Aligned_cols=187  Identities=12%  Similarity=0.076  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 045242           13 PFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTIDQN   92 (243)
Q Consensus        13 ~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   92 (243)
                      |++.++++++.+|.+++-.|.. +. -|++.+-.+......+.-+.......   .+++.    .+.++-|.+ .+.++.
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~-~~-gDg~~fQw~~~~~i~~~g~~v~~~~~---~p~f~----p~amlgG~l-W~~gN~   70 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKF-DT-GDGFFFQWVMCSGIFLVGLVVNLILG---FPPFY----PWAMLGGAL-WATGNI   70 (254)
T ss_pred             CchhHHHHHHHhcccceeeEec-cC-CCcHHHHHHHHHHHHHHHHHHHHhcC---CCcce----eHHHhhhhh-hhcCce
Confidence            4678899999999999999987 43 67766665555444444333332221   12221    123333444 477888


Q ss_pred             HHHHhhcccChhhhhhhccch-hHHHHHHHHH-HhhccccccccccccchhHHHHHHHHHHHHHHHhCCccC-CCCCC--
Q 045242           93 LFYTGMKYTTATFTTAMANVL-PAFAFLMAWI-IRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLD-LPWTN--  167 (243)
Q Consensus        93 ~~~~~l~~~~~~~a~~i~~~~-Pi~~~il~~~-~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~-~~~~~--  167 (243)
                      +-.-.++..+-+..-.+-+.. -+..-..+.+ +++++.... ++.....+|++++++|..+..+-++...+ ....+  
T Consensus        71 ~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~-~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~  149 (254)
T PF07857_consen   71 LVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVP-SSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEET  149 (254)
T ss_pred             eehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceecccccccc-chhHHHHHHHHHHHHHHHheeeecCCCCCcccccccc
Confidence            888888988888887776653 3333333333 344333322 33455688999999998887654443311 11110  


Q ss_pred             -------CccCcC---CCCCC------CCCcchHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 045242          168 -------HNYHQE---STSNS------SVQSPIKGALMITIGCFSWAGFMVLQAITLKS  210 (243)
Q Consensus       168 -------~~~~~~---~~~~~------~~~~~~~G~~~~llaal~~a~~~v~~k~~~~~  210 (243)
                             ++.++.   .++++      ...+...|..+++.+++.|+...+=.....++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~  208 (254)
T PF07857_consen  150 PLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDH  208 (254)
T ss_pred             ccccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhC
Confidence                   000010   00111      11247899999999999999987766665544

The region concerned is approximately 280 residues long.

>TIGR00803 nst UDP-galactose transporter

Probab=96.27  E-value=0.015  Score=47.63  Aligned_cols=58  Identities=10%  Similarity=0.014  Sum_probs=52.8

Q ss_pred             HHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHH
Q 045242           88 TIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAM  151 (243)
Q Consensus        88 ~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~  151 (243)
                      .....+....+++.++..-+....+.++++.+++.++++|+++..+      +.|..+.+.|+.
T Consensus       163 a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~------~~g~~lV~~~~~  220 (222)
T TIGR00803       163 VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTF------YLGAILVFLATF  220 (222)
T ss_pred             HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHH------HHHHHHHHeeeE
Confidence            6667778999999999999999999999999999999999999997      999999888764

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=95.98  E-value=0.012  Score=49.26  Aligned_cols=172  Identities=11%  Similarity=0.077  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhh-hhhhccchhHHHHHH
Q 045242           42 HVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTIDQNLFYTGMKYTTATF-TTAMANVLPAFAFLM  120 (243)
Q Consensus        42 ~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-a~~i~~~~Pi~~~il  120 (243)
                      ..+++.+++.-++--+++.-..... +++.+.|++......  +  ...+.+-++++++-=+.. --++-+-.++.+.++
T Consensus        34 NLITFaqFlFia~eGlif~skf~~~-k~kiplk~Y~i~V~m--F--F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~  108 (330)
T KOG1583|consen   34 NLITFAQFLFIATEGLIFTSKFFTV-KPKIPLKDYAITVAM--F--FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMIL  108 (330)
T ss_pred             eehHHHHHHHHHHhceeeecccccc-CCCCchhhhheehhe--e--eeeeeeccceeeecccceEEEEEecCcHHHHHHH
Confidence            5678888888777766654222222 255666765443322  2  345556677777643333 334556789999999


Q ss_pred             HHHHhhccccccccccccchhHHHHHHHHHHHHHHHhCCccCCCCCCCccCcCCCCCCCCCcchHHHHHHHHHHHHHHHH
Q 045242          121 AWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQESTSNSSVQSPIKGALMITIGCFSWAGF  200 (243)
Q Consensus       121 ~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~llaal~~a~~  200 (243)
                      ++++.|+|.+.+|      ..++++.-+|+++.++.+....+.  .+..++.++ ...+...+..|..+...+-+.=|.-
T Consensus       109 g~il~~k~Ys~~Q------y~Sv~~iTiGiiIcTl~s~~d~~~--~~~~l~~~~-~~~~~~~w~iGi~lL~~al~~sa~m  179 (330)
T KOG1583|consen  109 GWILLGKRYSLRQ------YSSVLMITIGIIICTLFSSKDGRS--KLSGLDSGS-AQSDFFWWLIGIALLVFALLLSAYM  179 (330)
T ss_pred             HHHhccceeehhh------hhhHHhhhhhheeEEeecCcchhh--hhcccccCc-ccccchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999997      999999999999998765433221  111111111 1123455788988888887777777


Q ss_pred             HHHHHHHHhcCC-chhHHHHHHHHHHHH
Q 045242          201 MVLQAITLKSYP-TELSLTALICLMGTI  227 (243)
Q Consensus       201 ~v~~k~~~~~~~-~~~~~~~~~~~~~~~  227 (243)
                      .+++...-+++. ++.+.++|.=..+..
T Consensus       180 giyqE~~Y~kyGKh~~EalFytH~LsLP  207 (330)
T KOG1583|consen  180 GIYQETTYQKYGKHWKEALFYTHFLSLP  207 (330)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhccc
Confidence            777765555543 566777776655443

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.82  E-value=0.19  Score=38.55  Aligned_cols=137  Identities=14%  Similarity=0.056  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 045242           13 PFLAVILLQFGYAGMSIFSKFALNKGM-SPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTIDQ   91 (243)
Q Consensus        13 ~~~~~~~a~~~~a~~~~~~k~~~~~~~-~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   91 (243)
                      ..+..+.+..+-.....+.-.. .+.. +|..-.+.-+..+.+++..+.+..+++......++.-++...-|.+| ..+-
T Consensus         6 ~ll~~i~aG~~l~~Q~~iN~qL-~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lG-a~~v   83 (150)
T COG3238           6 YLLFAILAGALLPLQAAINGRL-ARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLG-AIFV   83 (150)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHH-HHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchh-hhhh
Confidence            4444455545444444444333 2333 59999999999999998887776443332221233233444556665 6666


Q ss_pred             HHHHHhhcccChhhhh-hhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHH
Q 045242           92 NLFYTGMKYTTATFTT-AMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFM  153 (243)
Q Consensus        92 ~~~~~~l~~~~~~~a~-~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~  153 (243)
                      ..-.......+++... .+..-+-+...+++.+-.... + ++++|..|+.|+++.++|+.++
T Consensus        84 t~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~-~-~~~~~~~r~lgi~L~l~gil~~  144 (150)
T COG3238          84 TSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGV-P-KRPLNLPRILGILLVLAGILLA  144 (150)
T ss_pred             hhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCC-C-cCCCCHHHHHHHHHHHHHHHHh
Confidence            6666667777776654 455566677777766433210 0 1234455799999999995444

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=95.62  E-value=0.099  Score=43.04  Aligned_cols=136  Identities=11%  Similarity=0.047  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHhhcCC----CCCCCHHHHHHHHHHHHHH
Q 045242           12 KPFLAVILLQFGYAGMSIFSKFALNK-GMSPHVFAVYRHAVATIVVAPFALILDRKV----RPKMTLSIFVKILLLGLLE   86 (243)
Q Consensus        12 ~~~~~~~~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~   86 (243)
                      .|.++++++-..=|.........-.+ .-+...+.++-++.+.+.+..-.++...-.    ........++.+.++++.+
T Consensus       172 ~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~s  251 (337)
T KOG1580|consen  172 FGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIAS  251 (337)
T ss_pred             hHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            36666666666666666665544221 134567777778887777664333221100    0111335577788888887


Q ss_pred             HHHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHH
Q 045242           87 PTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMT  154 (243)
Q Consensus        87 ~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~  154 (243)
                       .+++.+.|.-+.+-++-.-+++..+--.|+++.+.++++..++.+|      |.|.++.+.|...=.
T Consensus       252 -~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQ------wlgtvlVF~aL~~D~  312 (337)
T KOG1580|consen  252 -CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQ------WLGTVLVFSALTADV  312 (337)
T ss_pred             -HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHH------HHHHHHHHHHhhhHh
Confidence             9999999999999999999999999999999999999999999998      999999999987764

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.36  E-value=0.19  Score=43.13  Aligned_cols=138  Identities=13%  Similarity=0.146  Sum_probs=103.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHhhcC-----CCCCC-CHHHHHHHHHHH
Q 045242           11 AKPFLAVILLQFGYAGMSIFSKFALNK-GMSPHVFAVYRHAVATIVVAPFALILDRK-----VRPKM-TLSIFVKILLLG   83 (243)
Q Consensus        11 ~~~~~~~~~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~r~~~~~i~l~~~~~~~~~~-----~~~~~-~~~~~~~~~~~g   83 (243)
                      ..|+.++....+.-+...+..|...+. +.+-+.+.++..+.+...+.......+..     +.... +...+..+.+.+
T Consensus       156 ~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc  235 (314)
T KOG1444|consen  156 LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSC  235 (314)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence            358999999999999999999987643 57888899999999888777665444321     11112 233355666666


Q ss_pred             HHHHHHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHH
Q 045242           84 LLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTL  155 (243)
Q Consensus        84 ~~~~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~  155 (243)
                      +++ .+-..+-+.+.+..++...++.-...-..+.+...+++++++++..      .+|+.+++.|.++-..
T Consensus       236 v~g-f~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n------~~gll~~~~ggv~Y~~  300 (314)
T KOG1444|consen  236 VMG-FGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLN------VIGLLVGFFGGVLYSY  300 (314)
T ss_pred             HHH-HHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhh------hHHHHHHhhhhhHHhh
Confidence            666 6777788899999999888887766666777777778888999886      9999999999988763

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=94.95  E-value=0.12  Score=39.36  Aligned_cols=55  Identities=22%  Similarity=0.071  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC-----C-chhHHHHHHHHHHHHHHHHHHHHhccCC
Q 045242          186 GALMITIGCFSWAGFMVLQAITLKSY-----P-TELSLTALICLMGTIEGTIVALFLERGN  240 (243)
Q Consensus       186 G~~~~llaal~~a~~~v~~k~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (243)
                      |.++++.|.++.+.+.++.|+..++.     . |+.....+....+.+.++|...+.|...
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~   61 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQ   61 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            67899999999999999999988772     2 7899999999999999999998877643

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=94.79  E-value=0.8  Score=39.26  Aligned_cols=138  Identities=16%  Similarity=0.150  Sum_probs=94.1

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHHHHHHHHHHhhcCCCC-------CCC----H
Q 045242            9 IRAKPFLAVILLQFGYAGMSIFSKFALNKG----MSPHVFAVYRHAVATIVVAPFALILDRKVRP-------KMT----L   73 (243)
Q Consensus         9 ~~~~~~~~~~~a~~~~a~~~~~~k~~~~~~----~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~-------~~~----~   73 (243)
                      =+..|..++..++++-|.-+.+.++.+.+.    -+|++....-.-...+.++|..+..++....       ..+    .
T Consensus       161 f~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~  240 (349)
T KOG1443|consen  161 FNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLIL  240 (349)
T ss_pred             eeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHH
Confidence            345699999999999999999999887542    3688888887778888888887777664321       111    1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHH
Q 045242           74 SIFVKILLLGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFM  153 (243)
Q Consensus        74 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~  153 (243)
                      +....+.+.|... .+--.+.+.-+..++.-..++..-.-=+-+.+++..+.+|+++...      |.|..++..|+..-
T Consensus       241 rv~g~i~l~g~la-F~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN------~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  241 RVIGLISLGGLLA-FLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLN------WLGLAICLAGILLH  313 (349)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhH------HHHHHHHHHHHHHh
Confidence            2222222333332 2222234444555555555554445567788899999999999887      99999999999876

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=94.25  E-value=0.0043  Score=51.07  Aligned_cols=136  Identities=12%  Similarity=0.167  Sum_probs=85.1

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHH
Q 045242            9 IRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPT   88 (243)
Q Consensus         9 ~~~~~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   88 (243)
                      +..||+..++.+.+.+-.+.+..+.---++.+...--..-+.++++.+.   .  .+. .++.++. .+.-...|+.- +
T Consensus       149 n~kkgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~---~--~~~-~~~~~K~-t~~nii~G~~W-a  220 (288)
T COG4975         149 NLKKGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALILG---F--FKM-EKRFNKY-TWLNIIPGLIW-A  220 (288)
T ss_pred             hhhhheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHHh---h--ccc-ccchHHH-HHHHHhhHHHH-H
Confidence            4456777777777766555555554411233333333333344333332   1  111 1233444 44556667776 8


Q ss_pred             HHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHH
Q 045242           89 IDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMT  154 (243)
Q Consensus        89 ~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~  154 (243)
                      .++..++++-+..+.+.+-.++.+.-+...+=+.+++|||-++++  =..-++|+++.++|.+++.
T Consensus       221 ~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkE--m~~v~iGiilivvgai~lg  284 (288)
T COG4975         221 IGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKE--MVYVIIGIILIVVGAILLG  284 (288)
T ss_pred             hhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhh--hhhhhhhHHHHHHHhhhhh
Confidence            899999999999999888888889999999999999999999886  1222455556666665553

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=94.05  E-value=1.3  Score=36.97  Aligned_cols=125  Identities=10%  Similarity=-0.018  Sum_probs=82.4

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-HHHHHHHhhcCCCC-CCCHHHHHHHHHHHHHH
Q 045242            9 IRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIV-VAPFALILDRKVRP-KMTLSIFVKILLLGLLE   86 (243)
Q Consensus         9 ~~~~~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~-l~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~   86 (243)
                      +...|+.++++++++-|...+.....++++-.++..--.+...-+++ .++......+.... .--.+.+-...+.-++.
T Consensus       111 ~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~  190 (244)
T PF04142_consen  111 NPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFL  190 (244)
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHH
Confidence            45679999999999999999999888776545555555554444444 33332222221111 11112222333344444


Q ss_pred             HHHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccc
Q 045242           87 PTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRK  133 (243)
Q Consensus        87 ~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~  133 (243)
                      .+.+..+...-++|.+...=..-....-+.+.++++.+++.+++...
T Consensus       191 ~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f  237 (244)
T PF04142_consen  191 QAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSF  237 (244)
T ss_pred             HHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHH
Confidence            46666777778898888877778888899999999999999999874

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=93.75  E-value=0.59  Score=38.31  Aligned_cols=139  Identities=10%  Similarity=0.130  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC----CCCCHHHHHHHHHHHHHH
Q 045242           12 KPFLAVILLQFGYAGMSIFSKFALN-KGMSPHVFAVYRHAVATIVVAPFALILDRKVR----PKMTLSIFVKILLLGLLE   86 (243)
Q Consensus        12 ~~~~~~~~a~~~~a~~~~~~k~~~~-~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~   86 (243)
                      .|+.++...++.-+..-...|...+ .+..-++-.++..+++..+++.+....+....    ...+.....+.+..|+..
T Consensus       155 ~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~s  234 (309)
T COG5070         155 PGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCS  234 (309)
T ss_pred             CceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHH
Confidence            3777777777777777777776642 24667888999999999999888777654332    123333345666666665


Q ss_pred             HHHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHh
Q 045242           87 PTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIK  157 (243)
Q Consensus        87 ~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~  157 (243)
                       .+-..+-.++++-++.+.-+.+-.+.-.-.++.+.++++|+.+...      +.++++++....+-...+
T Consensus       235 -vgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~s------i~sillGflsg~iYavak  298 (309)
T COG5070         235 -VGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLS------IFSILLGFLSGAIYAVAK  298 (309)
T ss_pred             -hhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHH------HHHHHHHHHHHHHHHHHH
Confidence             6677788899999999998888888888888999999999999885      999999998877765544

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=92.71  E-value=0.24  Score=41.66  Aligned_cols=187  Identities=12%  Similarity=0.110  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHHh-CCCCh--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 045242           23 GYAGMSIFSKFALN-KGMSP--HVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTIDQNLFYTGMK   99 (243)
Q Consensus        23 ~~a~~~~~~k~~~~-~~~~~--~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~   99 (243)
                      .+=.+..+..+..+ .++.|  +.+++.|+++-..+.+.-.... +.+++..++|.   ...++.+. ...+.+...++.
T Consensus        54 ~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~-~~k~r~iP~rt---Y~~la~~t-~gtmGLsn~Slg  128 (367)
T KOG1582|consen   54 LYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLI-QTKRRVIPWRT---YVILAFLT-VGTMGLSNGSLG  128 (367)
T ss_pred             HHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEee-cccceecchhH---hhhhHhhh-hhccccCcCccc
Confidence            33455555555543 24553  5778888877654444322111 12223445554   34444443 445555555555


Q ss_pred             ccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHhCCccCCCCCCCccCcCCCCCCC
Q 045242          100 YTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQESTSNSS  179 (243)
Q Consensus       100 ~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (243)
                      |++=-.-.++-.+--+=+.+.+.++=+.|..+.+      ..++.+..+|.++.++.++                  ...
T Consensus       129 YLNYPtQviFKccKliPVmiggifIqGkRY~v~d------~~aA~lm~lGli~FTLADs------------------~~s  184 (367)
T KOG1582|consen  129 YLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHD------YIAAMLMSLGLIWFTLADS------------------QTS  184 (367)
T ss_pred             cccCcHHHHHHhhhhhhhhheeeeeccccccHHH------HHHHHHHHHHHHhhhhccc------------------ccC
Confidence            5543333333332222234566677778888886      9999999999999985443                  122


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHHHHHhcc
Q 045242          180 VQSPIKGALMITIGCFSWAGFMVLQAITLKSYP-TELSLTALICLMGTIEGTIVALFLER  238 (243)
Q Consensus       180 ~~~~~~G~~~~llaal~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (243)
                      +..+..|....-.|-++=|.---++.+.++..| +...+.++...+|.+.++....+.++
T Consensus       185 PNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge  244 (367)
T KOG1582|consen  185 PNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGE  244 (367)
T ss_pred             CCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhccc
Confidence            334567888777777776665555666677665 45677888888888888777666544

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.88  E-value=0.52  Score=39.81  Aligned_cols=141  Identities=17%  Similarity=0.134  Sum_probs=94.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHhhcCC----CCC-CCHHHHHHHHHHHH
Q 045242           11 AKPFLAVILLQFGYAGMSIFSKFALNK-GMSPHVFAVYRHAVATIVVAPFALILDRKV----RPK-MTLSIFVKILLLGL   84 (243)
Q Consensus        11 ~~~~~~~~~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~----~~~-~~~~~~~~~~~~g~   84 (243)
                      +.|.++.+.+++.-|.+.+..|..+.. +-.-+.++++-...+.++.+|.......-+    .++ ...+-|..+.+.|+
T Consensus       184 ~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsgl  263 (347)
T KOG1442|consen  184 WIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGL  263 (347)
T ss_pred             hhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHH
Confidence            569999999999999999999987533 234677888999999999999877653322    122 25555666666777


Q ss_pred             HHHHHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHhC
Q 045242           85 LEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKG  158 (243)
Q Consensus        85 ~~~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~~  158 (243)
                      +|..+++ ....-++-++|-+-.+-...-...=.+++..+.+|..+...      |.+-++.+.|...-+.-++
T Consensus       264 fgF~mgy-vTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lw------wtsn~~vLvgs~~YT~vk~  330 (347)
T KOG1442|consen  264 FGFAMGY-VTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLW------WTSNIVVLVGSLAYTLVKE  330 (347)
T ss_pred             HHHHhhh-eeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhhe------eeeeEEEEehhHHHHHHHH
Confidence            7744443 22333444444221111111233445677888999988885      9999999999998886665

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=89.58  E-value=12  Score=32.68  Aligned_cols=141  Identities=11%  Similarity=0.052  Sum_probs=87.5

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHH
Q 045242            8 YIRAKPFLAVILLQFGYAGMSIFSKFALNKGMSPHVFAVYRHAVATIVVAPFALILDRKVRPKM--TLSIFVKILLLGLL   85 (243)
Q Consensus         8 ~~~~~~~~~~~~a~~~~a~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~   85 (243)
                      .+...|+.+++.++..-|+..+.-..+++++-.+.++=-.|.-.-++++..+.......+....  -...|-...+.-++
T Consensus       179 ~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl  258 (345)
T KOG2234|consen  179 QNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVL  258 (345)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHH
Confidence            3566799999999999999999888887665555555555544444443333322211111100  00111223333333


Q ss_pred             HHHHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHH
Q 045242           86 EPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMT  154 (243)
Q Consensus        86 ~~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~  154 (243)
                      ..+.+..+...-++|.+-..=..-..+.-+++.+.++.+++.+++...      ..|+.+++..+.+-.
T Consensus       259 ~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F------~lG~~lVi~Si~lY~  321 (345)
T KOG2234|consen  259 LNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYF------LLGALLVILSIFLYS  321 (345)
T ss_pred             HHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHH------HHHHHHHHHHHHHhh
Confidence            334444555555666655555555556788999999999999999886      899988888887774

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=88.29  E-value=0.93  Score=32.47  Aligned_cols=110  Identities=12%  Similarity=0.189  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 045242           16 AVILLQFGYAGMSIFSKFALNKGMSP------HVFAVYRHAVATIVVAPFALILDRKVRPKMTLSIFVKILLLGLLEPTI   89 (243)
Q Consensus        16 ~~~~a~~~~a~~~~~~k~~~~~~~~~------~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   89 (243)
                      -++...++||....+.|.. +.+.+.      ....+.|-..               . ...+++++..+++     .-.
T Consensus         7 ~lvaVgllWG~Tnplirrg-s~g~~~v~~~~~k~~~~lqe~~---------------t-l~l~w~Y~iPFll-----Nqc   64 (125)
T KOG4831|consen    7 KLVAVGLLWGATNPLIRRG-SLGWDKVKSSSRKIMIALQEMK---------------T-LFLNWEYLIPFLL-----NQC   64 (125)
T ss_pred             HHHHHHHHHccccHHHHHH-HhhHhhccCchHHHHHHHHHHH---------------H-HHHhHHHHHHHHH-----HHh
Confidence            4667788999999999987 433321      1122222111               1 1234444444332     244


Q ss_pred             HHHHHHHhhcccChhhhhhhcc-chhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHH
Q 045242           90 DQNLFYTGMKYTTATFTTAMAN-VLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFM  153 (243)
Q Consensus        90 ~~~~~~~~l~~~~~~~a~~i~~-~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~  153 (243)
                      +..+||.-++..+.+.+.-+.+ +.-.++++.+..+..|....+.      +.|..+...|+.+.
T Consensus        65 gSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a------~lGt~liv~Gi~Lc  123 (125)
T KOG4831|consen   65 GSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLA------LLGTSLIVFGIWLC  123 (125)
T ss_pred             hHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhcccccccee------ehhhhHHhhhhhhe
Confidence            5677888889999888876554 5668888888866655555554      99999999998775

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=88.23  E-value=0.62  Score=33.54  Aligned_cols=42  Identities=38%  Similarity=0.488  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhcc
Q 045242          195 FSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLER  238 (243)
Q Consensus       195 l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (243)
                      ++|+.+.+..|+..++. |+.....+++..+++ .++...+.+.
T Consensus         1 ~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~   42 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKI-SPLSITFWRFLIAGI-LLILLLILGR   42 (126)
T ss_pred             ceeeeHHHHHHHHhccC-CHHHHHHHHHHHHHH-HHHHHHhhcc
Confidence            47899999999999998 599999999999998 6666666554

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=87.39  E-value=4.1  Score=34.54  Aligned_cols=138  Identities=10%  Similarity=0.110  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCCHHHHHHHHHHHHHH
Q 045242           13 PFLAVILLQFGYAGMSIFSKFALN-KGMSPHVFAVYRHAVATIVVAPFALILDRKV-----RPKMTLSIFVKILLLGLLE   86 (243)
Q Consensus        13 ~~~~~~~a~~~~a~~~~~~k~~~~-~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~   86 (243)
                      |+...-.|-+.=|.-.-+...++. ++-+..++.++...++.++++........-.     ..+-+++.....++.+..+
T Consensus       191 Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~g  270 (367)
T KOG1582|consen  191 GVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAG  270 (367)
T ss_pred             eHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHh
Confidence            444333333333433333333332 3467788889999999888876655432211     1123455666777777776


Q ss_pred             HHHHHHHHHHhhcccChhhhhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHHHh
Q 045242           87 PTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIK  157 (243)
Q Consensus        87 ~~~~~~~~~~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~~  157 (243)
                       .++......-++.-++..++.+...---.+.+++++++.++++...      ..+.++.+.|+++=..++
T Consensus       271 -ylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy------~~~gllv~lgI~Ln~ysk  334 (367)
T KOG1582|consen  271 -YLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQY------VWSGLLVVLGIYLNMYSK  334 (367)
T ss_pred             -HhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHH------hhhhHHHHHHHHhhcccC
Confidence             6666666666677788888888888889999999999999999886      889999999999886544

>COG2510 Predicted membrane protein [Function unknown]

Probab=85.12  E-value=5.2  Score=29.94  Aligned_cols=52  Identities=13%  Similarity=-0.005  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhcc
Q 045242          186 GALMITIGCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLER  238 (243)
Q Consensus       186 G~~~~llaal~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (243)
                      -.++++++++.++...+..|--.++. ||...+........+.+..+....++
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g~   55 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTGN   55 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcCc
Confidence            45799999999999999999877777 78899999998888888877766544

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=82.61  E-value=15  Score=31.28  Aligned_cols=132  Identities=14%  Similarity=0.114  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHH-------hhcCC---CCCC---CHHHHH
Q 045242           12 KPFLAVILLQFGYAGMSIFSKFALNK-GMSPHVFAVYRHAVATIVVAPFALI-------LDRKV---RPKM---TLSIFV   77 (243)
Q Consensus        12 ~~~~~~~~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~r~~~~~i~l~~~~~~-------~~~~~---~~~~---~~~~~~   77 (243)
                      -|+.++.++.+.-|.+.+.....+++ |-++-+..++-.+++...++...--       ..+.+   .+..   -+..|.
T Consensus       164 iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~  243 (330)
T KOG1583|consen  164 IGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWV  243 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHH
Confidence            48888888888888888888766643 6889999999999886655432100       00000   0000   112122


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccChhh----hhhhccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHH
Q 045242           78 KILLLGLLEPTIDQNLFYTGMKYTTATF----TTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFM  153 (243)
Q Consensus        78 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~----a~~i~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~  153 (243)
                      .+     +...+.+..-..|+..+++-.    ++++..+=-.+..+++.+.++..+++..      |+|+.+.+.|..+-
T Consensus       244 yL-----l~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h------~lGa~lVF~Gt~~f  312 (330)
T KOG1583|consen  244 YL-----LFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWH------WLGAALVFFGTLLF  312 (330)
T ss_pred             HH-----HHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHH------HHHHHHHHHHHHHH
Confidence            22     223455555555554444433    4445555678899999999999999997      99999999999998


Q ss_pred             H
Q 045242          154 T  154 (243)
Q Consensus       154 ~  154 (243)
                      .
T Consensus       313 a  313 (330)
T KOG1583|consen  313 A  313 (330)
T ss_pred             H
Confidence            6

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	243
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.6
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.56

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.60  E-value=8.2e-07  Score=63.90  Aligned_cols=68  Identities=12%  Similarity=0.245  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHHHHhhcccChhhhhhh-ccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHH
Q 045242           81 LLGLLEPTIDQNLFYTGMKYTTATFTTAM-ANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMT  154 (243)
Q Consensus        81 ~~g~~~~~~~~~~~~~~l~~~~~~~a~~i-~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~  154 (243)
                      ..+.+++..++.++..++++.|.+.+..+ ..+.|+++++++++++||++++.+      ++|+.+.+.|++++.
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~------~~Gi~lIi~Gv~~l~  102 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIIN  102 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHh
Confidence            46667778999999999999999999887 799999999999999999999996      999999999999986

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.56  E-value=1.3e-07  Score=70.72  Aligned_cols=69  Identities=13%  Similarity=0.261  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHhhcccChhhhhhh-ccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHH
Q 045242           81 LLGLLEPTIDQNLFYTGMKYTTATFTTAM-ANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTL  155 (243)
Q Consensus        81 ~~g~~~~~~~~~~~~~~l~~~~~~~a~~i-~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~  155 (243)
                      ..+++.+.+++.++..++++.|++.+..+ .++.|++++++++++++|++++.+      ++|+.+.++|++++..
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~------~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINL  103 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------C------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence            56777789999999999999999999888 899999999999999999999997      9999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00