Citrus Sinensis ID: 045262

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590----
Protein Sequence
MKLGERKDMKPLLVKFGVAFVFSLAGIFVVRLRKKGSKPSLPPPSSGFSDHGSEFELGVRAQHEDEVPNLKSVPSSCSVVSVASQRYEESYMEKVVVDNSMVGLSPSSRHSRDNNSYLLPEFNELVKEIDFGGPNVGYHPKKVIVTPKSDVENPRPCRGSEKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHADKCAGVEELVYLKWINACLRYELRNYQPPAGKTVARDLSKTLSPNSEEKAKQLILEYAHAEGHGNIMNIDSDHWSTSQASCITDSENHHDDSSADKSFSTKISSSNKTKFFHKLRKLVRGKDVSPLKRSSSVDKIGSFEDGDSPWYSSGTSTVMNAVSPRSSYRHSLDVQRLRSVNEDEIRNVKSRRSNSDLVSSDAYKRFSLSRESSIDFGKQPDQDAN
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHcccccccEEcccccccEEEcccccEEEcccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccHHHccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccHHcccccccccccccccccccccccccccccccccccHHccccccccccccHHHHHccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mklgerkdmkpLLVKFGVAFVFSLAGIFVVRLrkkgskpslpppssgfsdhgsefelgvraqhedevpnlksvpsscsVVSVASQRYEESYMEKVVVdnsmvglspssrhsrdnnsyllpeFNELVKEIdfggpnvgyhpkkvivtpksdvenprpcrgsekddCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHkaaaidpdtQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHADKCAGVEELVYLKWINACLRYElrnyqppagktVARDLsktlspnsEEKAKQLILEYAHaeghgnimnidsdhwstsqascitdsenhhddssadksfstkisssnktkFFHKLRKlvrgkdvsplkrsssvdkigsfedgdspwyssgtstvmnavsprssyrhsldvqrlrsvnedeirnvksrrsnsdlvssdaykrfslsressidfgkqpdqdan
Flexible Loop (DISEMBL)
mklgerkdmkpllVKFGVAFVFSLAGIFVVRLRKKGSKPSLPPPSSGFSDHGSEFELGVRAQHEdevpnlksvpsscsVVSVASQRYEESYMEKVVVDNSMVglspssrhsrdnNSYLLPEFNELVKEIDFGGPNVGYHPKKvivtpksdvenprpcrgsekddceQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHkaaaidpdtqsrLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSkeveklhadkcagveELVYLKWINACLRYELRNYQPPAGKTVARDLSKTLSPNSEEKAKQLILEYAHAEGHGNIMNIDSDHWSTSQASCITDSENHHDDSSADKSfstkisssnktkffhklrklvrgkdvsplkrsssvdkigsfedgdspwyssGTSTVMNavsprssyrhsldvqrlrsvnedeirnvksrrsnsdlvssdaykrfslsressidfgkqpdqdan
Low Complexity Region (SEG)
MKLGERKDMKPLLVKFGVAFVFSLAGIFVVRLRkkgskpslpppssgFSDHGSEFELGVRAQHEDEVPNLKsvpsscsvvsvasQRYEESYMEKVVVDNSMVGLSPSSRHSRDNNSYLLPEFNELVKEIDFGGPNVGYHPKKVIVTPKSDVENPRPCRGSEKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAktkikllkkklRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHADKCAGVEELVYLKWINACLRYELRNYQPPAGKTVARDLSKTLSPNSEEKAKQLILEYAHAEGHGNIMNIDSDHWSTSQASCITDSENHHDDSSADKSFSTKISSSNKTKFFHKLRKLVRGKDVSPLKRSSSVDKIGSFEDGDSPWYSSGTSTVMNAVSPRSSYRHSLDVQRLRSVNEDEIRNVKSRRSNSDLVSSDAYKRFSLSRESSIDFGKQPDQDAN
Disordered region (IsUnstruct)
**********PLLVKFGVAFVFSLAGIFVVRL**************************************************************VV********************YLLPEFNELVKEIDFGGPNVGYHPKKVIV**************************************KNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIES*************************************************************************************************************************************************LHADKCAGVEELVYLKWINACLRYELRNYQ*************************LILEYAHAEGHGNIMNID******************************************************************************************************************************************************
Disordered Region (DISOPRED)
**********PLLVKFGVAFVFSLAGIFV*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************YLKWINA***********************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MKLGERKDMKPLLVKFGVAFVFSLAGIFVVRLRK****************HGSEFELGVRAQHEDEVPNLKSVPSSCSVVSVASQRYEESYMEKVVVDNSMVGL********DNNSYLLPEFNELVKEIDFGGPNVGYHPKKVIVTPK*******************EVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTK***********DPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHADKCAGVEELVYLKWINACLRYELRNYQPPAGKTVARDLSKTLSPNSEEKAKQLILEYAHAEGHGNIMNIDSDHWSTSQASCI***********************NKTKFFHKLRKLVRGK**********VDKIGSFEDGDSPWYSSGTSTVMNAVSPRSSYRHSLDVQRLRSVNEDEIRN************SDAYKRFSLSRESSIDF*********
Disordered Region (DISPRO)
******KDMKPLLVKFGVAFVFSLAGIFVVRLRK******************************DEVPN*KSVPSSCSVVSVASQRYEESYMEKVVVDNSMVGLSPSSRHSRDNNSYLLPEFNELVKEIDFGGPN******KVIVTPKS*VENPRPCRGSEKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHADKCAGVEELVYLKWINACLRYELRNYQ**************LSPNSE****Q***EYAH************************************************TK***KL*KLVR*****************************************************************************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLGERKDMKPLLVKFGVAFVFSLAGIFVVRLRKKGSKPSLPPPSSGFSDHGSEFELGVRAQHEDEVPNLKSVPSSCSVVSVASQRYEESYMEKVVVDNSMVGLSPSSRHSRDNNSYLLPEFNELVKEIDFGGPNVGYHPKKVIVTPKSDVENPRPCRGSExxxxxxxxxxxxxxxxxxxxxxxxxxxxLLEYYGLKEQETIVMELQNRLKLNNMExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAHKAAAIDPDTQSRLQRxxxxxxxxxxxxxxxxxxxxxxxxxxxxLESTQMLEISVLEDGExxxxxxxxxxxxxxxxxxxxxxxxxxxxKCAGVEELVYLKWINACLRYELRNYQPPAGKTVARDLSKTLSPNSEEKAKQLILEYAHAEGHGNIMNIDSDHWSTSQASCITDSENHHDDSSADKSFSTKISSSNKTKFFHKLRKLVRGKDVSPLKRSSSVDKIGSFEDGDSPWYSSGTSTVMNAVSPRSSYRHSLDVQRLRSVNEDEIRNVKSRRSNSDLVSSDAYKRFSLSRESSIDFGKQPDQDAN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	594	2.2.26 [Sep-21-2011]
Q9LI74	1004	Protein CHUP1, chloroplas	no	no	0.759	0.449	0.361	9e-59

>sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1

 Score =  228 bits (581), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 177/490 (36%), Positives = 283/490 (57%), Gaps = 39/490 (7%)

Query: 12  LLVKFGVAFVFSLAGIFVVRLRKKGSKPSLPPPSSGFSDHGSEFELGVRAQHEDEVPNLK 71
           + V+ G     S+A + V RL  K SKPS P      SD+G   E G + Q  D   NL 
Sbjct: 1   MFVRIGFVVAASIAAVTVKRLNVKPSKPSKP------SDNG---EGGDKEQSVDPDYNLN 51

Query: 72  SVPSSCSVVSVASQRYEESYMEKVVVDNSMVGLSPSSRHSRDNNSYLLPEFNELVK-EID 130
                        Q  EE   E+V + NS++  +  S     ++  +LPEF +L+  EI+
Sbjct: 52  DK---------NLQEEEEEEEEEVKLINSVINQTRGSFSDYLDDD-ILPEFEDLLSGEIE 101

Query: 131 FGGPNVGYHPKKVIVTPKSDVENPRPCRGSEKDDCEQEVKNLKNMVQMLQDREKNLEVEL 190
           +  P+   + +K     K +VE             + E++ LK +V+ L++RE  LE EL
Sbjct: 102 YPLPDDDNNLEKAEKERKYEVEMAY---------NDGELERLKQLVKELEEREVKLEGEL 152

Query: 191 LEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEA 250
           LEYYGLKEQE+ ++ELQ +LK+  +E  +LN+ I SLQA+ ++L+ +++ +     ELE 
Sbjct: 153 LEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEELSQNGIVRKELEV 212

Query: 251 AKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAE 310
           A+ KIK L+++++ +A Q + Q+L +++ V+ LQ +  +A   D + + +L+ ++ LE +
Sbjct: 213 ARNKIKELQRQIQLDANQTKGQLLLLKQHVSSLQMKEEEAMNKDTEVERKLKAVQDLEVQ 272

Query: 311 AEDLRKSNMKLQLENSQLARRLESTQ--MLEISVLEDGEREA-LNEMSQRLREENTSLSK 367
             +L++ N +LQ E  +L+ +L+S +  +  +S + + ++ A + E    L+  N  L K
Sbjct: 273 VMELKRKNRELQHEKRELSIKLDSAEARIATLSNMTESDKVAKVREEVNNLKHNNEDLLK 332

Query: 368 EVEKLHADKCAGVEELVYLKWINACLRYELRNYQPPAGKTVARDLSKTLSPNSEEKAKQL 427
           +VE L  ++ + VEELVYL+W+NACLRYELRNYQ PAGK  ARDLSK LSP S+ KAK+L
Sbjct: 333 QVEGLQMNRFSEVEELVYLRWVNACLRYELRNYQTPAGKISARDLSKNLSPKSQAKAKRL 392

Query: 428 ILEYAHAE-GHGNIMNIDSDHWSTSQASCITDSENHHDDSSADKSFSTKISSSNKTKFFH 486
           +LEYA +E G G+  +++S++   SQ S  +   +  D++S D S S   S S K     
Sbjct: 393 MLEYAGSERGQGDT-DLESNY---SQPS--SPGSDDFDNASMDSSTSRFSSFSKKPGLIQ 446

Query: 487 KLRKLVRGKD 496
           KL+K  + KD
Sbjct: 447 KLKKWGKSKD 456

Required for the positioning and movement of chloroplasts. Interacts with profilin and actin independent of its polymerization status. Regulates chloroplast localization by anchoring chloroplasts to the plasma membrane and forming a bridge to the actin cytoskeleton.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	594
255549776	640	conserved hypothetical protein [Ricinus	0.937	0.870	0.527	1e-161
147769693	636	hypothetical protein VITISV_039631 [Viti	0.966	0.902	0.519	1e-148
225442422	636	PREDICTED: protein CHUP1, chloroplastic	0.964	0.900	0.517	1e-148
449448068	635	PREDICTED: protein CHUP1, chloroplastic-	0.930	0.870	0.520	1e-145
449480767	624	PREDICTED: protein CHUP1, chloroplastic-	0.912	0.868	0.518	1e-142
356556594	595	PREDICTED: protein CHUP1, chloroplastic-	0.902	0.900	0.476	1e-133
356550482	608	PREDICTED: protein CHUP1, chloroplastic-	0.951	0.929	0.453	1e-132
356528898	639	PREDICTED: uncharacterized protein LOC10	0.944	0.877	0.474	1e-127
357454749	542	Protein CHUP1 [Medicago truncatula] gi|3	0.845	0.926	0.455	1e-124
224054414	382	predicted protein [Populus trichocarpa]	0.634	0.986	0.602	1e-124

>gi|255549776|ref|XP_002515939.1| conserved hypothetical protein [Ricinus communis] gi|223544844|gb|EEF46359.1| conserved hypothetical protein [Ricinus communis]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 312/591 (52%), Positives = 410/591 (69%), Gaps = 34/591 (5%)

Query: 3   LGERKDMKPLLVKFGVAFVFSLAGIFVVRLRKKGSKPSLPPPSSGFSDHGSEFELGVRAQ 62
           + E+KD++P+LVKFGVA   S AG    RL+ +  K S PP S   SDH  E +  +R  
Sbjct: 2   MKEKKDIRPVLVKFGVALALSFAGFLYSRLKNRRGKFSKPPQSPCSSDHAVEVDKDIRRA 61

Query: 63  HEDEVPNLKSVPSSCSVVSVASQRYEESYMEKVVVDNSMVGLSPSSRHSRDNNSYLLPEF 122
                  L S+PS      +++ ++E++ M K   DN +   SPSSR + D + YLLPEF
Sbjct: 62  GMKRTSTLDSIPS------ISADKHEDTCMPKF--DNPVAVFSPSSRQNGDKDGYLLPEF 113

Query: 123 NELVKEIDFGGPNVGYHPKKVIVTPKSDVENPRPCRGSEKDDCEQEVKNLKNMVQMLQDR 182
            +LV E D      G  PK+   +P+SDVE PR  R  EK+D EQE+++LK MV+ML++R
Sbjct: 114 IDLVNEFDLAATTAGISPKE---SPRSDVETPRAVRPVEKEDHEQEIRHLKTMVRMLRER 170

Query: 183 EKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHA 242
           EKNLE +LLE+YGLKEQET +MELQNRLK++NME +L NLKIESLQADN+RL+AQ ADHA
Sbjct: 171 EKNLEFQLLEFYGLKEQETAMMELQNRLKISNMETKLFNLKIESLQADNQRLQAQFADHA 230

Query: 243 KTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQ 302
           K V+EL+AA++KIKLL+K+L++EA QN+E IL +Q+RV++LQE+  KAAA D D + +LQ
Sbjct: 231 KIVAELDAARSKIKLLRKRLKSEAGQNKEHILVLQKRVSRLQEEELKAAANDSDIKVKLQ 290

Query: 303 RLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREEN 362
           RLK LE EAEDLR SN +L LENS+LAR+LES ++L  SVLED E EAL E+S +L++EN
Sbjct: 291 RLKDLEVEAEDLRNSNHRLTLENSELARQLESAKILANSVLEDPETEALRELSDKLKQEN 350

Query: 363 TSLSKEVEKLHADKCAGVEELVYLKWINACLRYELRNYQPPAGKTVARDLSKTLSPNSEE 422
             L KEVE+LHAD+C   EELVYL+W+NACLRYELRN+QP  GKTVARDLSK+LSP SEE
Sbjct: 351 DHLVKEVEQLHADRCKDCEELVYLRWVNACLRYELRNFQPAHGKTVARDLSKSLSPKSEE 410

Query: 423 KAKQLILEYAHAEGHG----NIMNIDSDHWSTSQASCITDSENHHDDSSADKSFSTKISS 478
           KAKQLILEYA++E  G    NIM+ +SD WS+S  S + DS +  DDS      S K S+
Sbjct: 411 KAKQLILEYANSEEMGEKGINIMDFESDQWSSSHTSYVIDSGD-FDDSVV----SPKTSN 465

Query: 479 SNKTKFFHKLRKLVRGKDVSPLKRSSSVDKIGSFEDGDSPWYSSGTSTVMNAVS------ 532
           S+K KFF+KLR+L+RGK++      SS+DK G  ED DSP  SS  ST  +A S      
Sbjct: 466 SSKIKFFNKLRRLIRGKEIQHHNHVSSMDKTGVAEDSDSPRGSSSRSTGTDAASDGQYSR 525

Query: 533 --------PRSSYRHSLDVQRLRSVNEDEIRNVKSRRSNSDLVSSDAYKRF 575
                    R   RH  D+Q +++   DE+++++  R NSD+ SS  ++RF
Sbjct: 526 VQSLSLDLSRHFSRHPADIQGVKNSRMDEMKDMEIGRRNSDIGSSYGHRRF 576

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147769693|emb|CAN65532.1| hypothetical protein VITISV_039631 [Vitis vinifera]

 Score =  533 bits (1372), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 313/602 (51%), Positives = 410/602 (68%), Gaps = 28/602 (4%)

Query: 3   LGERKDMKPLLVKFGVAFVFSLAGIFVVRLRKKGSKPSLPPPSSGFSDHGSEFELGV-RA 61
           +GE+K ++PLL++ GVA   S AG    R + K   PS PPPS   SD GS  +LG  RA
Sbjct: 4   VGEKKGVRPLLLQLGVALALSFAGFLYSRFKTKRIGPSQPPPSPQSSDCGSGVDLGGDRA 63

Query: 62  QHEDEVPNLKSVPSSCSVVSVASQRYEESYMEKVVVDNSMVGLSPSSRHSRDNNSYLLPE 121
              D +  L++ PSSC++  +A+++Y E+ ++K  VDN +V LS SS++S D +  LLPE
Sbjct: 64  GLRDGLRALQTTPSSCNIAPIAAEKYGEACLQKDKVDNFLVDLSSSSKNSGDKDKVLLPE 123

Query: 122 FNELVKEIDFGGPNVGYHPKKVIVTPKSDVENPRPCRGSEKDDCEQEVKNLKNMVQMLQD 181
           F E++KE D    N G    + + T  SDVE P   R +EKD+ EQE+  L++MV+ L++
Sbjct: 124 FKEIMKEFDLVAMNSGISLSQDVETLGSDVEKPIAFRTTEKDEYEQEINQLRSMVRGLRE 183

Query: 182 REKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADH 241
           RE+NLEV+LLEYYGL+EQET VMELQNRL  NN E +LLNLKIESLQAD +RLEAQ+AD+
Sbjct: 184 RERNLEVQLLEYYGLQEQETTVMELQNRLNFNNTEFKLLNLKIESLQADKQRLEAQLADY 243

Query: 242 AKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRL 301
              V+ELE A+ KIKLL++KLR+EAE+NR+QI  +++RV K Q+Q HKAA  DPD Q   
Sbjct: 244 PTVVAELEGARAKIKLLEQKLRSEAERNRKQIFILKQRVEKFQDQEHKAANSDPDIQ--- 300

Query: 302 QRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREE 361
            +LK LE EAE+LR SN+KLQLENS+LA RLESTQ+L  SVLE  E E   ++S  LR+E
Sbjct: 301 LKLKDLENEAEELRNSNIKLQLENSELAERLESTQILASSVLEHPEVEEAKKLSHCLRQE 360

Query: 362 NTSLSKEVEKLHADKCAGVEELVYLKWINACLRYELRNYQPPAGKTVARDLSKTLSPNSE 421
           N  LSK++E+L AD+CA VEELVYL+W+NACLRYELRNY+ P G+TVA+DLS TLSP SE
Sbjct: 361 NEDLSKKIEQLQADRCADVEELVYLRWLNACLRYELRNYELPDGRTVAKDLSNTLSPKSE 420

Query: 422 EKAKQLILEYAHAEGHG----NIMNIDSDHWSTSQASCITDSENHHDDSSADKSFSTKIS 477
           EKAK+LILEY + EG      +IM+ DSD WS+SQ     DS +  DDSSA  S +T  S
Sbjct: 421 EKAKKLILEYGYTEGIEEKVIDIMDFDSDLWSSSQG----DS-SEFDDSSAFNSSATITS 475

Query: 478 SSNKTKFFHKLRKLVRGKDVSPLKRSSSVDKIGSFE-----DGDSPWYSSGTSTVMNAVS 532
           SS KTKF  KLR+L+RGKD     + S+ DK  S E       DS   +S   T ++A +
Sbjct: 476 SSKKTKFLSKLRRLIRGKDHHHHDQVSTADKAASPEMLPTCSDDSLHCNSAYPTGIDAKT 535

Query: 533 ----------PRSSYRHSLDVQRLRSVNEDEIRNVKSRRSNSDLVSSDAYKRFSLSRESS 582
                     P SS+RHSLD+QRL+S+N ++ + ++  R  SD    +AYKR  L  E+ 
Sbjct: 536 AGNSNRFTALPPSSFRHSLDIQRLKSLNVEDFKELERARRYSDTGHFNAYKRIILGGEAV 595

Query: 583 ID 584
            D
Sbjct: 596 ND 597

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442422|ref|XP_002283384.1| PREDICTED: protein CHUP1, chloroplastic [Vitis vinifera] gi|297743166|emb|CBI36033.3| unnamed protein product [Vitis vinifera]

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 312/603 (51%), Positives = 413/603 (68%), Gaps = 30/603 (4%)

Query: 3   LGERKDMKPLLVKFGVAFVFSLAGIFVVRLRKKGSKPSLPPPSSGFSDHGSEFELGV-RA 61
           +GE+K ++PLL++ GVA   S AG    R + K   PS PPPS   SD GS  +LG  RA
Sbjct: 4   VGEKKGVRPLLLQLGVALALSFAGFLYSRFKTKRIGPSQPPPSPQSSDCGSGVDLGGDRA 63

Query: 62  QHEDEVPNLKSVPSSCSVVSVASQRYEESYMEKVVVDNSMVGLSPSSRHSRDNNSYLLPE 121
              D +  L++ PSSC++  +A+++Y E+ ++K  VDN +V LS SS++S D +  LLPE
Sbjct: 64  GLRDGLRALQTTPSSCNIAPIAAEKYGEACLQKDKVDNFLVDLSSSSKNSGDKDKVLLPE 123

Query: 122 FNELVKEIDFGGPNVGYHPKKVIVTPKSDVENPRPCRGSEKDDCEQEVKNLKNMVQMLQD 181
           F E++KE D    N G    + + T  SDVE P   R +EKD+ +QE+  L++MV+ L++
Sbjct: 124 FKEIMKEFDLVAMNSGISLSQDVETLGSDVEKPIAFRTTEKDEYDQEINQLRSMVRGLRE 183

Query: 182 REKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADH 241
           RE+NLEV+LLEYYGL+EQET VMELQNRL  NN E +LLNLKIESLQAD +RLEAQ+AD+
Sbjct: 184 RERNLEVQLLEYYGLQEQETTVMELQNRLNFNNTEFKLLNLKIESLQADKQRLEAQLADY 243

Query: 242 AKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRL 301
              V+ELE A+ KIKLL++KLR+EAE+NR+QI  +++RV K Q+Q HKAA  DPD Q   
Sbjct: 244 PTVVAELEGARAKIKLLEQKLRSEAERNRKQIFILKQRVEKFQDQEHKAANSDPDIQ--- 300

Query: 302 QRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREE 361
            +LK LE EAE+LR SN+KLQLENS+LA RLESTQ+L  SVLE  E E   ++S  LR+E
Sbjct: 301 LKLKDLENEAEELRNSNIKLQLENSELAERLESTQILASSVLEHPEVEEAKKLSHCLRQE 360

Query: 362 NTSLSKEVEKLHADKCAGVEELVYLKWINACLRYELRNYQPPAGKTVARDLSKTLSPNSE 421
           N  LSK++E+L AD+CA VEELVYL+W+NACLRYELRNY+ P G+TVA+DLS TLSP SE
Sbjct: 361 NEDLSKKIEQLQADRCADVEELVYLRWLNACLRYELRNYELPDGRTVAKDLSNTLSPKSE 420

Query: 422 EKAKQLILEYAHAEGHG----NIMNIDSDHWSTSQASCITDSENHHDDSSADKSFSTKIS 477
           EKAK+LILEY + EG      +IM+ DSD WS+SQ     DS +  DDSSA  S +T  S
Sbjct: 421 EKAKKLILEYGYTEGIEEKVIDIMDFDSDLWSSSQG----DS-SEFDDSSAFNSSATITS 475

Query: 478 SSNKTKFFHKLRKLVRGKD------VSPLKRSSSVDKIGSFEDGDSPWYSSGTSTVMNAV 531
           SS KTKF  KLR+L+RGKD      VS   +S+S + + +  D DS   +S   T ++A 
Sbjct: 476 SSKKTKFLSKLRRLIRGKDHHHHDQVSTADKSASPEMLPTCSD-DSLHCNSAYPTGIDAK 534

Query: 532 S----------PRSSYRHSLDVQRLRSVNEDEIRNVKSRRSNSDLVSSDAYKRFSLSRES 581
           +          P SS+RHSLD+QRL+S+N ++ + ++  R  SD    +AYKR  L  E+
Sbjct: 535 TAGNSNRFTALPPSSFRHSLDIQRLKSLNVEDFKELERARRYSDTGHFNAYKRIILGGEA 594

Query: 582 SID 584
             D
Sbjct: 595 VND 597

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448068|ref|XP_004141788.1| PREDICTED: protein CHUP1, chloroplastic-like [Cucumis sativus]

 Score =  523 bits (1346), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 305/586 (52%), Positives = 393/586 (67%), Gaps = 33/586 (5%)

Query: 10  KPLLVKFGVAFVFSLAGIFVVRLRKKGSKPSLPPPSSGFSD-HGSEFELGVRAQHEDEVP 68
           +P+L KFGV    S AG    R R K  +P LPPPS   SD  G++  LG R +     P
Sbjct: 9   RPILFKFGVVLAISFAGFLYSRFRLKNKRPPLPPPSYSSSDDQGNKVNLG-RGRG----P 63

Query: 69  NLKSVPSSCSVVSVASQRYEESYMEKVVVDNSMVGLSPSSRHSRDNNSYLLPEFNELVKE 128
            L    +  +VV  A   YEE+ + KV  D+S +GL PS++H  D +  L PEF EL+KE
Sbjct: 64  RLDKQGTPSNVVLFAVDAYEETCIPKVNFDDSNLGLCPSNKHGVDKDGLLPPEFQELLKE 123

Query: 129 IDFGGPNVGYHPKKVIVTPKSDVENPRPCRGSEKDDCEQEVKNLKNMVQMLQDREKNLEV 188
            D    N  +  KK +  P+  +E P+  +  E D+ EQE++ LK+ V+ML++RE+NLEV
Sbjct: 124 FDLSAANAEFSSKKNVEAPRYGLETPKAYKTVENDEYEQEIRYLKSKVKMLRERERNLEV 183

Query: 189 ELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSEL 248
           +LLEYYGLKEQET VMELQNRLK+NNME +L   KIESL+ADNRRLE+QV DHAK+VS+L
Sbjct: 184 QLLEYYGLKEQETAVMELQNRLKINNMEAKLFTFKIESLEADNRRLESQVCDHAKSVSDL 243

Query: 249 EAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLE 308
           EAA+ KIK LKKKLR EAEQNR QIL +Q+RV KLQ+Q HK    + D Q +LQ+++ LE
Sbjct: 244 EAARAKIKFLKKKLRYEAEQNRGQILNLQKRVLKLQDQEHKTNQSNKDAQIKLQKIEDLE 303

Query: 309 AEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKE 368
            E E+LRKSN++L++ENS L RRL++TQ L  S+LED E+E+L E ++RL  EN +L+KE
Sbjct: 304 KEIEELRKSNLRLEIENSDLGRRLDATQFLANSLLEDQEKESLKEETERLTRENEALTKE 363

Query: 369 VEKLHADKCAGVEELVYLKWINACLRYELRNYQPPAGKTVARDLSKTLSPNSEEKAKQLI 428
           +E+L A + A VEELVYL+WINACLRYELRN+QPPAGKT ARDLSKTLSP SEEKAK+LI
Sbjct: 364 IEQLQAHRLADVEELVYLRWINACLRYELRNFQPPAGKTAARDLSKTLSPKSEEKAKKLI 423

Query: 429 LEYAHAEGH-GNIMNI---DSDHWSTSQASCITDSENHHDDSSADKSFSTKISSSNKTKF 484
           L+YA+ EG+ G  MN+   DSD WS+SQAS  TD     DDS+ D   ST  + SNK KF
Sbjct: 424 LDYANTEGNEGKSMNVTDFDSDQWSSSQASSHTDP-GDPDDSTTDFP-STAKTGSNKIKF 481

Query: 485 FHKLRKLVRGK----DVSPLKRSSSVDKIGSFEDGDSPWYSSGTSTVMNAVSPR------ 534
             KLRKL++GK    +++ L   S+     S ED DSP YS+  ST  NA          
Sbjct: 482 ISKLRKLLKGKGSQQNMTLLAEKSA----ASVEDSDSPCYSTSNSTGTNATRAEGQAIGY 537

Query: 535 -----SSYRHSLDVQRLRSVNEDEIRNVKSRRSNSDLVSSDAYKRF 575
                +S  HS+D  RL+S  ED+++   S R NSD+   +  KRF
Sbjct: 538 ATPLLNSSGHSMDFHRLQSQKEDDVKIEDSIRRNSDVGCVN--KRF 581

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449480767|ref|XP_004155990.1| PREDICTED: protein CHUP1, chloroplastic-like [Cucumis sativus]

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 304/586 (51%), Positives = 389/586 (66%), Gaps = 44/586 (7%)

Query: 10  KPLLVKFGVAFVFSLAGIFVVRLRKKGSKPSLPPPSSGFSD-HGSEFELGVRAQHEDEVP 68
           +P+L KFGV    S AG    R R K  +P LPPPS   SD  G++  LG R +     P
Sbjct: 9   RPILFKFGVVLAISFAGFLYSRFRLKNKRPPLPPPSYSSSDDQGNKVNLG-RGRG----P 63

Query: 69  NLKSVPSSCSVVSVASQRYEESYMEKVVVDNSMVGLSPSSRHSRDNNSYLLPEFNELVKE 128
            L    +S +VV  A   YEE+ + KV  D+S +GL PS++H  D +  L PEF EL+KE
Sbjct: 64  RLDKQGTSSNVVLFAVDAYEETCIPKVNFDDSNLGLCPSNKHGVDKDGLLPPEFQELLKE 123

Query: 129 IDFGGPNVGYHPKKVIVTPKSDVENPRPCRGSEKDDCEQEVKNLKNMVQMLQDREKNLEV 188
            D    N  Y            +E P+  +  E D+ EQE++ LK+ V+ML++RE+NLEV
Sbjct: 124 FDLSAANAEYG-----------LETPKAYKTVENDEYEQEIRYLKSKVKMLRERERNLEV 172

Query: 189 ELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSEL 248
           +LLEYYGLKEQET VMELQNRLK+NNME +L   KIESL+ADNRRLE+QV DHAK+VS+L
Sbjct: 173 QLLEYYGLKEQETAVMELQNRLKINNMEAKLFTFKIESLEADNRRLESQVCDHAKSVSDL 232

Query: 249 EAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLE 308
           EAA+ KIK LKKKLR EAEQNR QIL +Q+RV KLQ+Q HK    + D Q +LQ+++ LE
Sbjct: 233 EAARAKIKFLKKKLRYEAEQNRGQILNLQKRVLKLQDQEHKTNQSNKDAQIKLQKIEDLE 292

Query: 309 AEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKE 368
            E E+LRKSN++L++ENS L RRL++TQ L  S+LED E+E+L E ++RL  EN +L+KE
Sbjct: 293 KEIEELRKSNLRLEIENSDLGRRLDATQFLANSLLEDQEKESLKEETERLTRENEALTKE 352

Query: 369 VEKLHADKCAGVEELVYLKWINACLRYELRNYQPPAGKTVARDLSKTLSPNSEEKAKQLI 428
           +E+L A + A VEELVYL+WINACLRYELRN+QPPAGKT ARDLSKTLSP SEEKAK+LI
Sbjct: 353 IEQLQAHRLADVEELVYLRWINACLRYELRNFQPPAGKTAARDLSKTLSPKSEEKAKKLI 412

Query: 429 LEYAHAEGH-GNIMNI---DSDHWSTSQASCITDSENHHDDSSADKSFSTKISSSNKTKF 484
           L+YA+ EG+ G  MN+   DSD WS+SQAS  TD     DDS+ D   ST  + SNK KF
Sbjct: 413 LDYANTEGNEGKSMNVTDFDSDQWSSSQASSHTDP-GDPDDSTTDFP-STAKTGSNKIKF 470

Query: 485 FHKLRKLVRGK----DVSPLKRSSSVDKIGSFEDGDSPWYSSGTSTVMNAVSPR------ 534
             KLRKL++GK    +++ L   S+     S ED DSP YS+  ST  NA          
Sbjct: 471 ISKLRKLLKGKGSQQNMTLLAEKSA----ASVEDSDSPCYSTSNSTGTNATRAEGQAIGY 526

Query: 535 -----SSYRHSLDVQRLRSVNEDEIRNVKSRRSNSDLVSSDAYKRF 575
                +S  HS+D  RL+S  ED+++   S R NSD+   +  KRF
Sbjct: 527 ATPLLNSSGHSMDFHRLQSQKEDDVKIEDSIRRNSDVGCVN--KRF 570

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556594|ref|XP_003546609.1| PREDICTED: protein CHUP1, chloroplastic-like [Glycine max]

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 268/563 (47%), Positives = 375/563 (66%), Gaps = 27/563 (4%)

Query: 1   MKLGERKDMKPLLVKFGVAFVFSLAGIFVVRLRKKGSKPSLPPPSSGFSDHGSEFELGVR 60
           M + E K +KP+L+KFG+A   S AG    RLR +  KPS        S  G  F   + 
Sbjct: 2   MMIREEKGVKPVLLKFGLALALSFAGFIYSRLRTRRIKPSK-------SRKGCSFGAAL- 53

Query: 61  AQHEDEVPNLKSVPSSCSVVSVASQRY-EESYMEKVVVDNSMVGLSPSSRHSRDNNSYLL 119
                         S+C+ +S  +    EE+ + KV+ D S + LSP S  + D + +LL
Sbjct: 54  --------------STCNAISEGNFLCSEETCINKVISDKSPISLSPDSTQNGDEDEFLL 99

Query: 120 PEFNELVKEIDFGGPNVGYHPKKVIVTPKSDVENPRPCRGSEKDDCEQEVKNLKNMVQML 179
           PEFN+LVK++DF    V    K+ +  P   V +     G EKDD EQEV+ L+NM++ML
Sbjct: 100 PEFNDLVKDVDFEATVVRNSFKEDMGAPWLKVGSSIAYSGPEKDDYEQEVRQLRNMIRML 159

Query: 180 QDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVA 239
           QDRE++LEV+LLE+ GL+EQET VMELQNRLK + ME ++ NLK+++LQ++N RL+ QVA
Sbjct: 160 QDREQSLEVQLLEFCGLREQETAVMELQNRLKASTMEVKIFNLKVKTLQSENWRLKEQVA 219

Query: 240 DHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQS 299
           DH K ++ELE AK +++LL KK+R E EQNRE+I+ ++++V++LQ+Q  K AA D D Q 
Sbjct: 220 DHEKVLTELENAKAQVELLNKKIRHETEQNREKIITLKQKVSRLQDQECKDAAYDQDIQI 279

Query: 300 RLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLR 359
           ++Q+LK LE+EAE+LRKSN++LQ+ENS LARRL+STQ+L  + LED E  A+ + S+ L+
Sbjct: 280 KMQKLKYLESEAEELRKSNLRLQIENSDLARRLDSTQILANAFLEDPEAGAVKQESECLK 339

Query: 360 EENTSLSKEVEKLHADKCAGVEELVYLKWINACLRYELRNYQPPAGKTVARDLSKTLSPN 419
           +EN  L KE+E+  +D+C+ +EELVYL+WINACLRYELRNYQ P GKTVA+DLS++LSP 
Sbjct: 340 QENVRLMKEIEQFQSDRCSDLEELVYLRWINACLRYELRNYQAPPGKTVAKDLSRSLSPM 399

Query: 420 SEEKAKQLILEYAHAEGHGNIMNIDSDHWSTSQASCITDSENHHDDSSADKSFSTKISSS 479
           SE+KAKQLILEYA+A G GNI++ D D WS+SQAS ITD     D SSAD S + + +++
Sbjct: 400 SEKKAKQLILEYANANGPGNIVDFDIDQWSSSQASSITDFGECDDFSSADNSSAAR-TNT 458

Query: 480 NKTKFFHKLRKLVRGKDVSPLKRSSSVDKIGSFEDGDSPWYSSGTST---VMNAVSPRSS 536
           N TK F KLR+L++GK  S     +S  +   ++D +    S+ T +        +P ++
Sbjct: 459 NPTKLFGKLRQLIQGKGSSHHHSHASSQEKSGYQDSNPLCLSTSTRSEGLRSEFATPIAT 518

Query: 537 YRHSLDVQRLRSVNEDEIRNVKS 559
            R SLD   L SV E + RN  S
Sbjct: 519 SRTSLDFSSLTSVKEGDRRNSDS 541

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550482|ref|XP_003543616.1| PREDICTED: protein CHUP1, chloroplastic-like [Glycine max]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 267/589 (45%), Positives = 379/589 (64%), Gaps = 24/589 (4%)

Query: 1   MKLGERKDMKPLLVKFGVAFVFSLAGIFVVRLRKKGSKPSLPPPSSGFSDHGSEFELGVR 60
           M + E K +KP+L+KFG+A   S AG    RLR +  KPS       FS H +E  LG  
Sbjct: 1   MMIREEKGVKPVLLKFGLALALSFAGFIYSRLRTRRIKPSKSRKGCSFS-HENEDNLG-- 57

Query: 61  AQHEDEVPNLKSVPSSCSVVS---VASQRYEESYMEKVVVDNSMVGLSPSSRHSRDNNSY 117
                    + +  S+C+ +S        +EE+ + +V+ D S + LS  S    D + +
Sbjct: 58  -------GGIGAALSTCNAISEGNFLCSSFEEACINRVISDESRIALSSDSTQKGDKDEF 110

Query: 118 LLPEFNELVKEIDFGGPNVGYHPKKVIVTPKSDVENPRPCRGSEKDDCEQEVKNLKNMVQ 177
           LLPEFN+LVK++DFG   V    K+ +  P   V +       EKDD EQE+  L++M++
Sbjct: 111 LLPEFNDLVKDMDFGAIIVRNSFKEDMEAPWLKVGSSIAYASPEKDDYEQEISQLRSMIR 170

Query: 178 MLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQ 237
           MLQDR ++LEV+LLEY  L+EQET V+ELQNRLK + ME ++ NLK+++LQ++N RL+ Q
Sbjct: 171 MLQDRGRSLEVQLLEYCRLREQETAVIELQNRLKASTMEVKIFNLKVKTLQSENWRLKEQ 230

Query: 238 VADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDT 297
           VA HAK ++ELE AK ++KLL KK+R EAE NREQI+ ++++V++LQ+Q  K  A DPD 
Sbjct: 231 VAGHAKVLAELETAKAQVKLLNKKIRHEAEHNREQIITLKQKVSRLQDQECKDVACDPDI 290

Query: 298 QSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQR 357
           Q  +Q+ K LE+EAE+LRKSN++LQ+ENS LARRL+STQ+L  + LED   +A+ + S+ 
Sbjct: 291 QITMQKQKDLESEAEELRKSNLRLQIENSDLARRLDSTQILANAFLEDPAADAVKQESEC 350

Query: 358 LREENTSLSKEVEKLHADKCAGVEELVYLKWINACLRYELRNYQPPAGKTVARDLSKTLS 417
           L++EN  L KE+E+L +D+C+ +EELVY++WINACLRYELRNYQ P GKTVA+DLS++LS
Sbjct: 351 LKQENVRLMKEIEQLQSDRCSDLEELVYMRWINACLRYELRNYQAPLGKTVAKDLSRSLS 410

Query: 418 PNSEEKAKQLILEYAHAEGHGNIMNIDSDHWSTSQASCITDSENHHDDSSADKSFSTKIS 477
           P SE+KAKQLILEYA+ +  GNI++ D D WS+SQAS ITD     D SS D S + + +
Sbjct: 411 PTSEKKAKQLILEYANTDVPGNIVDFDIDQWSSSQASSITDFGECDDFSSVDNSSAAR-T 469

Query: 478 SSNKTKFFHKLRKLVRGKDVSPLKRSSSVDKIGSFEDGDSPWYSSGTST---VMNAVSPR 534
           ++N+TK F KLR L++GK  S      S  +   ++  + P  S+ T T        +P 
Sbjct: 470 NTNQTKLFGKLRHLIQGKGSSHHHSHVSSQEKSGYQVSNPPHLSTSTGTEGLRSEFATPI 529

Query: 535 SSYRHSLDVQRLRSVNEDEIRNVKSRRSNSDLVSSDAYKRFSLSRESSI 583
            + R SLD   L SV E +       R NSD +   +  +FS  ++ S 
Sbjct: 530 GTSRTSLDFSSLTSVKEGD-------RRNSDSIVVGSSNKFSACKKGSF 571

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528898|ref|XP_003533034.1| PREDICTED: uncharacterized protein LOC100781632 [Glycine max]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 284/599 (47%), Positives = 385/599 (64%), Gaps = 38/599 (6%)

Query: 5   ERKDMKPLLVKFGVAFVFSLAGIFVVRLRKKGSKPSLPPPSSGFSDHGSEFELGVRAQHE 64
           E K MKPLL K G+A   + AG     +R   +      PS     HG +   G R +  
Sbjct: 15  EEKGMKPLLQKCGLALALTFAGFLYSHIRTNATSSREQHPSG----HGKDDNFG-RGK-- 67

Query: 65  DEVPNLKSVPSSCSVVSVAS-QRYEESYMEKVVVDNSMVGLSPSSRHSRDNNSYLLPEFN 123
                 +   SSCS VS  +    EE+ + KV+  NS  G SP +R S + + +LL EFN
Sbjct: 68  ------RVASSSCSTVSEENVLDNEETCIGKVIRKNSPSGPSPRTRQSGEKDEFLLLEFN 121

Query: 124 ELVKEIDFGGPNVGY------HPKKV--IVTPKSDVENPRPCRGSEKDDCEQEVKNLKNM 175
           +L KE DFG    G       +PKK   + TP+S + +P      +KDDCE E++ L++M
Sbjct: 122 DLTKEADFGANISGSSFKELDYPKKKKEVETPRSKLGSPMAYANLDKDDCEIEIRKLRSM 181

Query: 176 VQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLE 235
           + MLQ+RE NLEV+LLEY G+KEQE  VMELQNRLK++NME ++ NLK+E+LQ++NRRLE
Sbjct: 182 IIMLQERETNLEVQLLEYCGIKEQEAAVMELQNRLKISNMETKMFNLKVETLQSENRRLE 241

Query: 236 AQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDP 295
           AQV DHAK ++ELE  KTK+K LKKKL+ EAEQNRE I+ ++++V KLQ+  + A+A D 
Sbjct: 242 AQVVDHAKLMTELETTKTKVKFLKKKLKYEAEQNREHIMNLKQKVAKLQDNEYNASANDQ 301

Query: 296 DTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMS 355
           + Q +L+RLK LE EAE LRKSN++LQL+NS L RRL+STQ+L  +VLED E   L    
Sbjct: 302 EIQIKLKRLKDLECEAEQLRKSNLRLQLDNSDLVRRLDSTQILANAVLEDPEVIRLLRSC 361

Query: 356 QRLREENTSLSKEVEKLHADKCAGVEELVYLKWINACLRYELRNYQPPAGKTVARDLSKT 415
           +RLR EN  L+KE+E+LHAD+C  +EELVYL+WINACLR+ELR+YQPP GKTVARDLSK+
Sbjct: 362 ERLRRENEGLTKELEQLHADRCLDLEELVYLRWINACLRHELRSYQPPPGKTVARDLSKS 421

Query: 416 LSPNSEEKAKQLILEYAHAEGHGNIMNIDSDHWSTSQASCITDSENHHDDSSADKSFSTK 475
           LSP SE+KAKQLILEYA  EG G++ ++DSD WS+SQAS +TD     D    D S   K
Sbjct: 422 LSPTSEKKAKQLILEYASNEGRGSVSDMDSDQWSSSQASFLTDPGEREDYFPLDNSSELK 481

Query: 476 IS-SSNKTKFFHKLRKLVRGKDVSPLK-RSSSVDKIGSFEDG--DSPWYSSGTSTVMNAV 531
            + +++K++ F KL +L+RGK+    + R++S +K  S ED   +SP +S   ST    +
Sbjct: 482 ATNNTSKSRIFGKLMRLIRGKESQNQRDRATSKEKSMSREDSNTNSPHFSLSISTGTEGL 541

Query: 532 -----SPRSSYRHSLDVQRLRSVNEDEIRNVKSRRSNSDLVSSDAYKRFSLSRESSIDF 585
                +P ++ R S D  +  S+ E+  R       NSD  +  + K  S  R  S+DF
Sbjct: 542 RSENATPSATSRTSFDFNQTMSMKEESSR-------NSDSHTPGSSKNLSPRRTRSVDF 593

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454749|ref|XP_003597655.1| Protein CHUP1 [Medicago truncatula] gi|355486703|gb|AES67906.1| Protein CHUP1 [Medicago truncatula]

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 250/549 (45%), Positives = 355/549 (64%), Gaps = 47/549 (8%)

Query: 5   ERKDMKPLLVKFGVAFVFSLAGIFVVRLRKKGSKPSLPPPSSGFSDHGSEFELGVRAQHE 64
           E K MKP+LV FG+A   S AG    RLR     P+                 G    HE
Sbjct: 4   EEKGMKPILVNFGLALALSFAGFICSRLRITRVSPT-----------------GRSLGHE 46

Query: 65  DEVPNLKSVPSSCSVVSVASQRYEESYMEKVVVDNSMVGLSPSSRHSRDNNSYLLPEFNE 124
            EV     + ++ S  +  S+  EE+        NS++     S  + D + +LLPEF+E
Sbjct: 47  SEVNLGGDIGATFSTSNTVSE--EETCTRGSRNKNSLIAPFSCSEQNGDRDEFLLPEFDE 104

Query: 125 LVKEIDFGGPNVGYHPKKVIVTPKSDVENPRPCRGSEKDDCEQEVKNLKNMVQMLQDREK 184
           LVKE++F            +  P+  V + R     +K+D EQE+  L+NMV++LQD+E+
Sbjct: 105 LVKEVEFE-----------VEAPRLKVGSSREYAVPDKNDYEQEIIQLRNMVRLLQDKEQ 153

Query: 185 NLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKT 244
           NLEV+LLEY GL+EQET+VMELQNRLK++NME ++ NLK ++LQ++NR+L+ QVAD  K 
Sbjct: 154 NLEVQLLEYCGLREQETVVMELQNRLKISNMEVKMFNLKTKNLQSENRKLKEQVADQEKV 213

Query: 245 VSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRL 304
           ++EL+A K KI+LL  ++R EAEQN+E+I+++++RV KLQEQ +K +A D D + +LQ+L
Sbjct: 214 LAELDAEKAKIELLNNEIRREAEQNKEKIVSLKQRVAKLQEQEYKGSACDQDIKIKLQKL 273

Query: 305 KVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTS 364
             +E+E E+LRKSN+KLQ+EN  LARRL+STQ+    V  D  RE     S+ LR+EN  
Sbjct: 274 NAVESEVEELRKSNLKLQIENYDLARRLDSTQI----VANDANRE-----SECLRKENEG 324

Query: 365 LSKEVEKLHADKCAGVEELVYLKWINACLRYELRNYQPPAGKTVARDLSKTLSPNSEEKA 424
           L K++E+LH+D+C+ +EELVY++WINACLRYELRNYQPP  KTVA+DLSK+LSP SE+KA
Sbjct: 325 LMKQIEQLHSDRCSDLEELVYMRWINACLRYELRNYQPPPNKTVAKDLSKSLSPTSEKKA 384

Query: 425 KQLILEYAHAEGHGNIMNIDSDHWSTSQASCITDSENHHDDSSADKSFSTKISSSNKTKF 484
           KQLILEYA   G G+I+N D D WS+SQAS ITDS  + D SS D S +++ +++++ KF
Sbjct: 385 KQLILEYADTNGAGSIVNFDFDQWSSSQASSITDSGEYDDFSSVDNSSASRTNTTSQNKF 444

Query: 485 FHKLRKLVRGKDVSPLKRSSSVDKIGSFEDGDSPWYSSGTST--------VMNAVSPRSS 536
           F KLR++++GKD    +   S       ED +SPW S+ T            +++S   S
Sbjct: 445 FSKLRRMIQGKDSHRRRHHHSQVSSRYQEDSNSPWPSTSTGIDGRISFDRRYSSLSGEGS 504

Query: 537 YRHSLDVQR 545
           +   LDV++
Sbjct: 505 FSGFLDVEK 513

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054414|ref|XP_002298248.1| predicted protein [Populus trichocarpa] gi|222845506|gb|EEE83053.1| predicted protein [Populus trichocarpa]

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 235/390 (60%), Positives = 298/390 (76%), Gaps = 13/390 (3%)

Query: 113 DNNSYLLPEFNELVKEIDFGGPNVGYHPKKVIVTPKSDVENPRPCRGSEKDDCEQEVKNL 172
           D + YLL EFN+LVKE+DF   N     K+  +   SDVE PR     EK D EQ++++L
Sbjct: 1   DKDGYLLTEFNDLVKELDFTANNSETSKKEETII--SDVETPRSFESVEKVDYEQDIRHL 58

Query: 173 KNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNR 232
           KNMV+ML++RE+NLEV++LE+YGLKEQE  VMELQNRLK+NNME +L  LKIESL+ADNR
Sbjct: 59  KNMVRMLRERERNLEVQMLEFYGLKEQEAAVMELQNRLKINNMEAKLFALKIESLRADNR 118

Query: 233 RLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAA 292
           RL+AQV DHAK V+EL+AA++K++L+KKKLR+EAEQN+EQIL++++RV++LQEQ   +A 
Sbjct: 119 RLQAQVVDHAKVVAELDAARSKLELVKKKLRSEAEQNKEQILSLKKRVSRLQEQELMSAE 178

Query: 293 IDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGER-EAL 351
            D D + +LQRLK LE EAE+LRKSN +L LENS+L  +LESTQ+L  S+LED E  + L
Sbjct: 179 TDSDIKMKLQRLKDLEIEAEELRKSNSRLHLENSELFSQLESTQILANSILEDPEVIKTL 238

Query: 352 NEMSQRLREENTSLSKEVEKLHADKCAGVEELVYLKWINACLRYELRNYQPPAGKTVARD 411
            +   RLR+EN  L+KEVE+L AD+C+ VEELVYL+W+NACLRYE+RN+QPP GKTVARD
Sbjct: 239 RKQGNRLRQENEDLAKEVEQLQADRCSDVEELVYLRWVNACLRYEMRNFQPPHGKTVARD 298

Query: 412 LSKTLSPNSEEKAKQLILEYAHAEGHG----NIMNIDSDHWSTSQASCITDSENHHDDSS 467
           LSK+LSP SE KAKQLILE+A+ EG      NIM  + DHWS+SQAS ITD+        
Sbjct: 299 LSKSLSPRSEMKAKQLILEFANTEGMAEKGINIMEFEPDHWSSSQASYITDA------GE 352

Query: 468 ADKSFSTKISSSNKTKFFHKLRKLVRGKDV 497
            D   S K S S KTK FHKLRKL+ GK+ 
Sbjct: 353 LDDPLSPKTSHSGKTKMFHKLRKLLLGKET 382

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	594
TAIR|locus:2034091	573	AR791 "AT1G52080" [Arabidopsis	0.757	0.785	0.435	2.8e-89
TAIR|locus:2102385	1004	CHUP1 "CHLOROPLAST UNUSUAL POS	0.681	0.403	0.366	6.9e-59
UNIPROTKB|E2R498	1874	CCDC88A "Uncharacterized prote	0.405	0.128	0.228	1.2e-07
UNIPROTKB|I3LK17	1741	CCDC88A "Uncharacterized prote	0.405	0.138	0.224	1.7e-07
TAIR|locus:504955294	1221	AT4G27595 "AT4G27595" [Arabido	0.772	0.375	0.225	1.8e-07
UNIPROTKB|F1SQK4	1819	CCDC88A "Uncharacterized prote	0.405	0.132	0.224	1.9e-07
UNIPROTKB|F1NQI1	1597	Gga.55054 "Uncharacterized pro	0.439	0.163	0.246	1.9e-07
UNIPROTKB|E1C294	2028	Gga.55054 "Uncharacterized pro	0.439	0.128	0.246	2.5e-07
UNIPROTKB|Q3V6T2	1871	CCDC88A "Girdin" [Homo sapiens	0.405	0.128	0.228	4e-07
UNIPROTKB|F1NPC4	405	LOC429272 "Uncharacterized pro	0.419	0.614	0.221	4.3e-07

TAIR|locus:2034091 AR791 "AT1G52080" [Arabidopsis thaliana (taxid:3702)]

 Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
 Identities = 210/482 (43%), Positives = 290/482 (60%)

Query:    98 DNSMVGLSPSSRHSRDNNS-YLLPEFNELVKEIDFGGPNVGYHPKKVIVTPKSDVENPRP 156
             + +++G+SP      D    +LLPEF E  K++D    +          TP+SD+  P  
Sbjct:    76 EETLIGVSPRRECDLDEKDVFLLPEFEEEAKKLDLLVCDD-------CETPRSDITAPLA 128

Query:   157 CRGSEKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNME 216
                 E+ D E E+  L+N V+ L++RE+ LE +LLEYY LKEQ+ I MEL++RLKLN ME
Sbjct:   129 FPSEEEADHENEINRLRNTVRALRERERCLEDKLLEYYSLKEQQKIAMELRSRLKLNQME 188

Query:   217 GRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAXXXXXXXXXXXRTEAEQNREQILAV 276
              ++ N KI+ LQA+N +L+A+  +H+K + EL+ A               +Q+  QIL++
Sbjct:   189 TKVFNFKIKKLQAENEKLKAECFEHSKVLLELDMAKSQVQVLKKKLNINTQQHVAQILSL 248

Query:   277 QERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQ 336
             ++RV +LQE+  KA   D +    +QRL+ LE+E  +L  +N +LQ EN +L+ +LES Q
Sbjct:   249 KQRVARLQEEEIKAVLPDLEADKMMQRLRDLESEINELTDTNTRLQFENFELSEKLESVQ 308

Query:   337 MLEISVLEDGER-EALNEMSQRLREENTSLSKEVEKLHADKCAGVEELVYLKWINACLRY 395
             ++  S LE+ E  E L E   RLR EN  L K+VE+L  D+C  +E+LVYL+WINACLRY
Sbjct:   309 IIANSKLEEPEEIETLREDCNRLRSENEELKKDVEQLQGDRCTDLEQLVYLRWINACLRY 368

Query:   396 ELRNYQPPAGKTVARDLSKTLSPNSEEKAKQLILEYAHAEGHGNIMNIDSDHWSTSQ--A 453
             ELR YQPPAGKTVARDLS TLSP SEEKAKQLILEYAH+E      N D D WS+SQ  +
Sbjct:   369 ELRTYQPPAGKTVARDLSTTLSPTSEEKAKQLILEYAHSED-----NTDYDRWSSSQEES 423

Query:   454 SCITDSENHHDDSSADKSFSTKISSSNKTKFFHKLRKLVRGKDVSPLKRSSSVDKIGSFE 513
             S ITDS    DDSS D  F+TK   + K K  HKL K++ GKD    K+     + GS E
Sbjct:   424 SMITDSM-FLDDSSVDTLFATKTKKTGKKKLMHKLMKILHGKDTKDSKK-----RAGSSE 477

Query:   514 DGDSPWYSSGTSTVMNAVSPRSSYRHSLDVQRL-RSVNEDE-IRN-VKSRRSNSDLVSSD 570
                S   ++G  +    +  RS+  HS+D Q L R  +E+E  +N +   R  S+   S 
Sbjct:   478 PSSS---NTGVHSTPRQL--RST--HSMDFQMLMRGKDEEEDFKNHIVMLRRKSEAAGSS 530

Query:   571 AY 572
              Y
Sbjct:   531 TY 532

GO:0003779 "actin binding" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2102385 CHUP1 "CHLOROPLAST UNUSUAL POSITIONING 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 611 (220.1 bits), Expect = 6.9e-59, P = 6.9e-59
 Identities = 156/426 (36%), Positives = 252/426 (59%)

Query:    85 QRYEESYMEKVVVDNSMVGLSPSSRHSRDNNSYLLPEFNELVK-EIDFGGPNVGYHPKKV 143
             Q  EE   E+V + NS++  +  S  S   +  +LPEF +L+  EI++  P+   + +K 
Sbjct:    56 QEEEEEEEEEVKLINSVINQTRGS-FSDYLDDDILPEFEDLLSGEIEYPLPDDDNNLEKA 114

Query:   144 IVTPKSDVENPRPCRGSEKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIV 203
                 K +VE       +  D    E++ LK +V+ L++RE  LE ELLEYYGLKEQE+ +
Sbjct:   115 EKERKYEVEM------AYNDG---ELERLKQLVKELEEREVKLEGELLEYYGLKEQESDI 165

Query:   204 MELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAXXXXXXXXXXXR 263
             +ELQ +LK+  +E  +LN+ I SLQA+ ++L+ +++ +     ELE A           +
Sbjct:   166 VELQRQLKIKTVEIDMLNITINSLQAERKKLQEELSQNGIVRKELEVARNKIKELQRQIQ 225

Query:   264 TEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQL 323
              +A Q + Q+L +++ V+ LQ +  +A   D + + +L+ ++ LE +  +L++ N +LQ 
Sbjct:   226 LDANQTKGQLLLLKQHVSSLQMKEEEAMNKDTEVERKLKAVQDLEVQVMELKRKNRELQH 285

Query:   324 ENSQLARRLESTQ--MLEISVLEDGEREA-LNEMSQRLREENTSLSKEVEKLHADKCAGV 380
             E  +L+ +L+S +  +  +S + + ++ A + E    L+  N  L K+VE L  ++ + V
Sbjct:   286 EKRELSIKLDSAEARIATLSNMTESDKVAKVREEVNNLKHNNEDLLKQVEGLQMNRFSEV 345

Query:   381 EELVYLKWINACLRYELRNYQPPAGKTVARDLSKTLSPNSEEKAKQLILEYAHAE-GHGN 439
             EELVYL+W+NACLRYELRNYQ PAGK  ARDLSK LSP S+ KAK+L+LEYA +E G G+
Sbjct:   346 EELVYLRWVNACLRYELRNYQTPAGKISARDLSKNLSPKSQAKAKRLMLEYAGSERGQGD 405

Query:   440 IMNIDSDHWSTSQASCITDSENHHDDSSADKSFSTKISSSNKTKFFHKLRKLVRGKDVSP 499
               +++S++   SQ S  +   +  D++S D S S   S S K     KL+K  + KD S 
Sbjct:   406 T-DLESNY---SQPS--SPGSDDFDNASMDSSTSRFSSFSKKPGLIQKLKKWGKSKDDSS 459

Query:   500 LKRSSS 505
             ++ S S
Sbjct:   460 VQSSPS 465

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0009707 "chloroplast outer membrane" evidence=IDA

GO:0009902 "chloroplast relocation" evidence=RCA;IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|E2R498 CCDC88A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 161 (61.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
 Identities = 59/258 (22%), Positives = 125/258 (48%)

Query:   123 NELVKEIDFGGPNVGYHPKKVIVTPKSDVENPRPCRGSEKDDCEQEVKNLKNMVQMLQDR 182
             +E +KE       + +  +++    + ++E+ +  +G   ++ E E+ +L+   ++LQ +
Sbjct:   593 HESIKETSSKLSKIEFEKRQI----RKELEHYKE-KGERAEELENELHHLEKENELLQKK 647

Query:   183 EKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEG-RLLNLKIESLQADNRRLEAQVADH 241
               NL++   +   L EQE   +E +NR     ++G + L  ++ESL+ +N +L+ +  + 
Sbjct:   648 ITNLKITCEKIEAL-EQENSELERENRKLKKTLDGFKNLTFQLESLEKENSQLDEENLEL 706

Query:   242 AKTVSELEAAXXXXXXXXXXXRTEAEQNREQI---LAVQERVTKLQEQAHKA-AAIDPDT 297
              + V  L+ A           + E E  +EQ+   L + +   K  E+   +   +D + 
Sbjct:   707 RRNVESLKCASMKMAQLQLENK-ELESEKEQLKKGLELMKASFKKTERLEVSYQGLDTEN 765

Query:   298 QSRLQR-LKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGERE--ALNEM 354
             Q RLQ+ L+    + + L      L++EN  L + LE  + +    LE  E+E  +L + 
Sbjct:   766 Q-RLQKALENSNKKIQQLESELQDLEVENQTLQKNLEELK-ISSKRLEQLEKENKSLEQE 823

Query:   355 SQRLREENTSLSKEVEKL 372
             + +L ++   L KE ++L
Sbjct:   824 TSQLEKDKKQLEKENKRL 841

GO:0008017 "microtubule binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

UNIPROTKB|I3LK17 CCDC88A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 155 (59.6 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
 Identities = 58/258 (22%), Positives = 124/258 (48%)

Query:   123 NELVKEIDFGGPNVGYHPKKVIVTPKSDVENPRPCRGSEKDDCEQEVKNLKNMVQMLQDR 182
             +E +KE       + +  +++    + ++E+ +  +G   ++ E E+ +L+   ++LQ +
Sbjct:   538 HESIKETSSKLSKIEFEKRQI----RKELEHYKE-KGERAEELENELHHLEKENELLQKK 592

Query:   183 EKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEG-RLLNLKIESLQADNRRLEAQVADH 241
               NL++   +   L EQE   +E +NR     ++  + L  ++ESL+ +N +L+ +  + 
Sbjct:   593 ITNLKITCEKVEAL-EQENSELERENRKFKKTLDSFKNLTFQLESLEKENSQLDEENLEL 651

Query:   242 AKTVSELEAAXXXXXXXXXXXRTEAEQNREQI---LAVQERVTKLQEQAHKA-AAIDPDT 297
              + V  L+ A           + E E  +EQ+   L + +   K  E+   +   +D + 
Sbjct:   652 RRNVESLKCASMKMAQLQLENK-ELESEKEQLKKGLELMKASFKKTERLEVSYQGLDTEN 710

Query:   298 QSRLQR-LKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGERE--ALNEM 354
             Q RLQ+ L+    + + L      L++EN  L + LE  + +    LE  E+E  +L + 
Sbjct:   711 Q-RLQKALENSNKKIQQLESELQDLEMENQTLQKNLEELK-ISSKRLEQLEKENKSLEQE 768

Query:   355 SQRLREENTSLSKEVEKL 372
             + +L ++   L KE ++L
Sbjct:   769 TSQLEKDKKQLEKENKRL 786

GO:0008017 "microtubule binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

TAIR|locus:504955294 AT4G27595 "AT4G27595" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 113/502 (22%), Positives = 209/502 (41%)

Query:   118 LLPEFNEL-VKEIDFGGPNVGYHPKKVIVTPK-----SDVENPRPCRGSEKDDCEQEVKN 171
             ++ E  EL VKEID+          K  +  K     S V+     R  E   C ++++ 
Sbjct:   675 IIQEAEELRVKEIDYLKKIEELSAAKESLVEKETKLLSTVQEAEELRRRELA-CLKKIEE 733

Query:   172 LKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADN 231
             L  + + L D+E  L+  + E   LKE+E   ++    L L+N        K++++  +N
Sbjct:   734 LSAVNERLVDKETKLQSSIQEVEVLKEREAENIKQIEELSLSNERLVEKEAKLQTVVQEN 793

Query:   232 RRLEAQVADHAKTVSELEAAXXXXXXXXXXXRTEAEQN---REQILAVQERV---TKLQE 285
               L  + + + K + EL              ++  ++N   RE+ +A  +++    KLQE
Sbjct:   794 EELREKESAYQKKIEELSKVDEIFADREAKLQSSTQENEELREREVAYLKKIEELAKLQE 853

Query:   286 QAHKAAAIDPDTQSRLQRLK----VLEAEAEDLRKSNMKLQLENSQLARRL-ESTQMLEI 340
                       D    ++ LK    + E + E+L   N  L ++ S+L   + E+ ++   
Sbjct:   854 NLLDKENELHDMVLEIEDLKAKDSLAEKKIEELSNLNKSLLVKESELQDVVFENEKLKSK 913

Query:   341 SVLEDGEREALNEMSQRLREENTSLSKEV---EKLHADKCAGVEELVYLKWINACLRYEL 397
               L     E L+++ Q L ++   L   V   EKL A   +  +++  LK +   L   L
Sbjct:   914 EALSLKTTEELSDVKQTLADKEKELKTAVVENEKLKAQAASSFQKIEELKNLKQSL---L 970

Query:   398 RNYQPPAGKTVARDLSKTLSPNSEEKAKQLI-LEYAHAEGHGNIMNIDSDHWSTSQASCI 456
                    G   A +  K    +S +K  +L+ LE +  +  GN    ++      +AS  
Sbjct:   971 DKENELEGVFQANEELKAKEASSLKKIDELLHLEQSWID-KGN----ENQELKVREASAA 1025

Query:   457 TDSE--NHHDDSSADKSFSTKISSSNKTKFFHKLRKLVRGKDVSPL-KRSSSVDKIGSFE 513
                E  +   +S  DK   T I  + + K   +   L + +++S L + +SS  + G   
Sbjct:  1026 KRIEELSKMKESLLDKELQTVIHDNYELKA-REASALKKIEELSKLLEEASSTHEKGEEI 1084

Query:   514 DGDSPW-YSSGTSTVMNAVSPRSSY-RHSLDVQRLR-SVNEDEIRNVKSRRSNSDLVSSD 570
                +P+  S+G   V    SP  +  RH  D   +  S +  ++     +  + D V S+
Sbjct:  1085 TNTNPFDNSTGEQKVQE--SPLEAIDRHLKDDTTIHWSAHNVQVIGKGEKGKDKDTVESE 1142

Query:   571 AY---KRFSLS-RESSIDFGKQ 588
              Y   KR + S R++  DF ++
Sbjct:  1143 VYHLEKREASSERDTEHDFAEE 1164

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1SQK4 CCDC88A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 155 (59.6 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
 Identities = 58/258 (22%), Positives = 124/258 (48%)

Query:   123 NELVKEIDFGGPNVGYHPKKVIVTPKSDVENPRPCRGSEKDDCEQEVKNLKNMVQMLQDR 182
             +E +KE       + +  +++    + ++E+ +  +G   ++ E E+ +L+   ++LQ +
Sbjct:   538 HESIKETSSKLSKIEFEKRQI----RKELEHYKE-KGERAEELENELHHLEKENELLQKK 592

Query:   183 EKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEG-RLLNLKIESLQADNRRLEAQVADH 241
               NL++   +   L EQE   +E +NR     ++  + L  ++ESL+ +N +L+ +  + 
Sbjct:   593 ITNLKITCEKVEAL-EQENSELERENRKFKKTLDSFKNLTFQLESLEKENSQLDEENLEL 651

Query:   242 AKTVSELEAAXXXXXXXXXXXRTEAEQNREQI---LAVQERVTKLQEQAHKA-AAIDPDT 297
              + V  L+ A           + E E  +EQ+   L + +   K  E+   +   +D + 
Sbjct:   652 RRNVESLKCASMKMAQLQLENK-ELESEKEQLKKGLELMKASFKKTERLEVSYQGLDTEN 710

Query:   298 QSRLQR-LKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGERE--ALNEM 354
             Q RLQ+ L+    + + L      L++EN  L + LE  + +    LE  E+E  +L + 
Sbjct:   711 Q-RLQKALENSNKKIQQLESELQDLEMENQTLQKNLEELK-ISSKRLEQLEKENKSLEQE 768

Query:   355 SQRLREENTSLSKEVEKL 372
             + +L ++   L KE ++L
Sbjct:   769 TSQLEKDKKQLEKENKRL 786

GO:0043422 "protein kinase B binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IEA

GO:0032148 "activation of protein kinase B activity" evidence=IEA

GO:0031929 "TOR signaling cascade" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0030032 "lamellipodium assembly" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0016477 "cell migration" evidence=IEA

GO:0016044 "cellular membrane organization" evidence=IEA

GO:0010975 "regulation of neuron projection development" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0006275 "regulation of DNA replication" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

UNIPROTKB|F1NQI1 Gga.55054 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 158 (60.7 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 70/284 (24%), Positives = 133/284 (46%)

Query:   161 EKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQET--IVMEL-----QNRLKLN 213
             E     ++++ L+N ++  ++++ N ++E L    +KE+E   +VME        ++K  
Sbjct:   412 ENQQLSKKIEKLQNQIE--KEKQSNQDLETLSEELIKEKEQLQVVMETLKADKDRQIKDL 469

Query:   214 NMEGRLLNLKIESL-QADNRRLEAQVAD---HAKTVSELEAAXXXXXXXXXXXRTEAEQN 269
               E   LN  + SL Q      EA+V D     K + E               + + +++
Sbjct:   470 KQENDHLNQVVLSLRQRSQVSSEARVKDIEKENKILHETVTETSSKVNKLEFEKKQLQKD 529

Query:   270 REQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLA 329
              +Q+    ERV +++++ H+    +     +   +K +  + E L++ N  L++EN +L 
Sbjct:   530 FDQVKEKVERVEEMEKELHRLEKENEQLTKKATAMKTVTKKVEVLQQENWDLEMENRKLR 589

Query:   330 RRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLH--ADKCAGVE-ELVYL 386
             + L++ Q + I  L D ER+     +++L EEN  L K VE +   + K A +E E   L
Sbjct:   590 KSLDTFQNVSIR-LGDLERD-----NKQLDEENLELRKVVETMRFTSTKMAQIEAENKDL 643

Query:   387 KWINACLRYELRNYQPPAGKTVARDLSKTLSPNSEEKAKQLILE 430
             +     LR  +   +  + K+   +LS   S NSE +  Q +LE
Sbjct:   644 EREKEDLRKNVEMLKVLSKKSERLELSYQ-SINSENQRLQQMLE 686

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

UNIPROTKB|E1C294 Gga.55054 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 158 (60.7 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 70/284 (24%), Positives = 133/284 (46%)

Query:   161 EKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQET--IVMEL-----QNRLKLN 213
             E     ++++ L+N ++  ++++ N ++E L    +KE+E   +VME        ++K  
Sbjct:   503 ENQQLSKKIEKLQNQIE--KEKQSNQDLETLSEELIKEKEQLQVVMETLKADKDRQIKDL 560

Query:   214 NMEGRLLNLKIESL-QADNRRLEAQVAD---HAKTVSELEAAXXXXXXXXXXXRTEAEQN 269
               E   LN  + SL Q      EA+V D     K + E               + + +++
Sbjct:   561 KQENDHLNQVVLSLRQRSQVSSEARVKDIEKENKILHETVTETSSKVNKLEFEKKQLQKD 620

Query:   270 REQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLA 329
              +Q+    ERV +++++ H+    +     +   +K +  + E L++ N  L++EN +L 
Sbjct:   621 FDQVKEKVERVEEMEKELHRLEKENEQLTKKATAMKTVTKKVEVLQQENWDLEMENRKLR 680

Query:   330 RRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLH--ADKCAGVE-ELVYL 386
             + L++ Q + I  L D ER+     +++L EEN  L K VE +   + K A +E E   L
Sbjct:   681 KSLDTFQNVSIR-LGDLERD-----NKQLDEENLELRKVVETMRFTSTKMAQIEAENKDL 734

Query:   387 KWINACLRYELRNYQPPAGKTVARDLSKTLSPNSEEKAKQLILE 430
             +     LR  +   +  + K+   +LS   S NSE +  Q +LE
Sbjct:   735 EREKEDLRKNVEMLKVLSKKSERLELSYQ-SINSENQRLQQMLE 777

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0001932 "regulation of protein phosphorylation" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=IEA

GO:0031648 "protein destabilization" evidence=IEA

GO:0043621 "protein self-association" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

UNIPROTKB|Q3V6T2 CCDC88A "Girdin" [Homo sapiens (taxid:9606)]

 Score = 155 (59.6 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
 Identities = 59/258 (22%), Positives = 124/258 (48%)

Query:   123 NELVKEIDFGGPNVGYHPKKVIVTPKSDVENPRPCRGSEKDDCEQEVKNLKNMVQMLQDR 182
             +E +KE       + +  +++    K ++E+ +  +G   ++ E E+ +L+   ++LQ +
Sbjct:   593 HESIKETSSKLSKIEFEKRQI----KKELEHYKE-KGERAEELENELHHLEKENELLQKK 647

Query:   183 EKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEG-RLLNLKIESLQADNRRLEAQVADH 241
               NL++   +   L EQE   +E +NR     ++  + L  ++ESL+ +N +L+ +  + 
Sbjct:   648 ITNLKITCEKIEAL-EQENSELERENRKLKKTLDSFKNLTFQLESLEKENSQLDEENLEL 706

Query:   242 AKTVSELEAAXXXXXXXXXXXRTEAEQNREQI---LAVQERVTKLQEQAHKA-AAIDPDT 297
              + V  L+ A           + E E  +EQ+   L + +   K  E+   +   +D + 
Sbjct:   707 RRNVESLKCASMKMAQLQLENK-ELESEKEQLKKGLELLKASFKKTERLEVSYQGLDIEN 765

Query:   298 QSRLQR-LKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGERE--ALNEM 354
             Q RLQ+ L+    + + L      L++EN  L + LE  + +    LE  E+E  +L + 
Sbjct:   766 Q-RLQKTLENSNKKIQQLESELQDLEMENQTLQKNLEELK-ISSKRLEQLEKENKSLEQE 823

Query:   355 SQRLREENTSLSKEVEKL 372
             + +L ++   L KE ++L
Sbjct:   824 TSQLEKDKKQLEKENKRL 841

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0016477 "cell migration" evidence=IMP

GO:0035091 "phosphatidylinositol binding" evidence=IDA

GO:0042127 "regulation of cell proliferation" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0016044 "cellular membrane organization" evidence=IDA

GO:0043422 "protein kinase B binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0003779 "actin binding" evidence=IDA

GO:0030027 "lamellipodium" evidence=IDA

GO:0030032 "lamellipodium assembly" evidence=IMP

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IMP

GO:0001932 "regulation of protein phosphorylation" evidence=ISS

GO:0006275 "regulation of DNA replication" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0032148 "activation of protein kinase B activity" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0031929 "TOR signaling cascade" evidence=ISS

GO:0010975 "regulation of neuron projection development" evidence=ISS

UNIPROTKB|F1NPC4 LOC429272 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 147 (56.8 bits), Expect = 4.3e-07, P = 4.3e-07
 Identities = 59/266 (22%), Positives = 121/266 (45%)

Query:   161 EKDDCEQEVKNLKNMVQMLQDREKNLEVEL-LEYYGLKEQETIVMELQNRLKLNNMEGRL 219
             + DD E  ++  K +   L+  ++ LE +L L    + + E    +L+ RLK  + E   
Sbjct:    26 QADDLESSLEQEKKIRMDLERAKRKLEGDLKLAQESIMDLENDKQQLEERLKKKDFELNT 85

Query:   220 LNLKIESLQADNRRLEAQVADHAKTVSELEAAXXXXXXXXXXXRTEAEQNREQILAVQER 279
             LN +IE  QA + +L+ ++ +    + ELE             R + E+ R ++L   E 
Sbjct:    86 LNARIEDEQAISAQLQKKLKELQARIEELEEELEAERTG----RAKVEKLRSELLQELEE 141

Query:   280 VTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLE 339
              ++  E+A  A ++      +L+  K  EAE + LR+   +  L++   A  L       
Sbjct:   142 TSERLEEAGGATSV------QLELNKKREAEFQKLRRDLEEATLQHEATAATLRKKHADS 195

Query:   340 ISVLEDGEREALNEMSQRLREENTSLSKEVEKLHADKCAGVEELVYLKWINACLRYELRN 399
             ++ L + + + L  + Q+L +E + L  E++ ++++     E+L+  K  N         
Sbjct:   196 VAELSE-QLDNLQRVKQKLEKEKSELKLELDDVNSN----TEQLIKAK-TNLEKMCRTTE 249

Query:   400 YQPPAGKTVARDLSKTLSPNSEEKAK 425
              Q    ++   +  +T++  S ++AK
Sbjct:   250 DQMNEHRSKLEEAQRTVTDLSTQRAK 275

GO:0003774 "motor activity" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034273001 SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (608 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	594
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-04
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	2e-04
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	2e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-04
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	3e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	3e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	4e-04
TIGR00618	1042	TIGR00618, sbcc, exonuclease SbcC	4e-04
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	5e-04
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	5e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-04
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	8e-04
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.001
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.002
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	0.002
pfam05622	713	pfam05622, HOOK, HOOK protein	0.002
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	0.002
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	0.003
pfam11932	250	pfam11932, DUF3450, Protein of unknown function (D	0.004

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 60.5 bits (147), Expect = 2e-09
 Identities = 59/267 (22%), Positives = 112/267 (41%), Gaps = 33/267 (12%)

Query: 138 YHPKKVIVTPKSDVENPR--PCRGSEKDDC-----EQEVKNLKNMVQMLQDREKNLEVEL 190
             P   IVT   D+  P      GS K +       +E++ L+  ++ L+++   LE  L
Sbjct: 641 LRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKAL 700

Query: 191 LEYYGLKEQ-ETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELE 249
            E     E+ E  + +L+  L+  + +   L   +  L+A+  +LE ++A  +K ++ELE
Sbjct: 701 AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760

Query: 250 AAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKV--- 306
           A   +++   ++   E  +   +I  ++ ++ +L+E+         + ++ L  L     
Sbjct: 761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA 820

Query: 307 ---------------LEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDG----- 346
                           E   EDL +   +L  +   LA  +E  +   I  LE       
Sbjct: 821 NLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELE-ELIEELESELEALL 879

Query: 347 -EREALNEMSQRLREENTSLSKEVEKL 372
            ER +L E    LR E   LS+E+ +L
Sbjct: 880 NERASLEEALALLRSELEELSEELREL 906

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 56.6 bits (137), Expect = 3e-08
 Identities = 48/195 (24%), Positives = 93/195 (47%), Gaps = 8/195 (4%)

Query: 179 LQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQV 238
           L + E  LE    E   LK  +  +  L++ L+    +   L  ++E L+ +   LE ++
Sbjct: 676 LAELEAQLEKLEEE---LKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEEL 732

Query: 239 ADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQ 298
                 + ELE    +++   ++L+   E+  E++ +++E + KL+E+      ++   Q
Sbjct: 733 EQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEE---IEELEEKRQ 789

Query: 299 SRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRL 358
           +  + L+ LE E E+  +    L+ E   L +R E  +  EI  LE+   E   ++ + L
Sbjct: 790 ALQEELEELEEELEEAERRLDALERELESLEQRRERLE-QEIEELEEEIEELEEKLDE-L 847

Query: 359 REENTSLSKEVEKLH 373
            EE   L KE+E+L 
Sbjct: 848 EEELEELEKELEELK 862

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 53.5 bits (129), Expect = 3e-07
 Identities = 50/218 (22%), Positives = 92/218 (42%), Gaps = 21/218 (9%)

Query: 160 SEKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNR--LKLNNMEG 217
            EK+  E++ + ++  +  L++  + L  E+ E     E+   ++E  N+    L   E 
Sbjct: 230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ 289

Query: 218 RLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQ 277
             +  KI  L+A+   LE  +A+  + + + E    K++    KL  E E+   +I   +
Sbjct: 290 LRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEER 349

Query: 278 ERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQM 337
           +R  KL E+               + L+ L AE E++ K   + + E      +LE  + 
Sbjct: 350 KRRDKLTEE----------YAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLK- 398

Query: 338 LEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHAD 375
                    E   L     RL+EE   LS+E+  L+A 
Sbjct: 399 --------REINELKRELDRLQEELQRLSEELADLNAA 428

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 53.2 bits (128), Expect = 4e-07
 Identities = 53/230 (23%), Positives = 109/230 (47%), Gaps = 19/230 (8%)

Query: 166  EQEVKNLKNMVQMLQDREKNLEVELLEY--------YGLKEQETIVMELQNRLKLNNMEG 217
            ++E++ L+   Q LQ+  + LE EL E           L+  E     L+  ++    E 
Sbjct: 778  KEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEI 837

Query: 218  RLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQ 277
              L  K++ L+ +   LE ++ +  + + ELEA K +++   K+L  E E+  E++  ++
Sbjct: 838  EELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELE 897

Query: 278  ERVTKLQEQAHKAAAIDPDTQSRLQRLKV----LEAEAEDLRKSNMKLQLEN--SQLARR 331
              + +L+E+  K      + +++L+RL+V    LE E E+  +  ++ +LE    +L   
Sbjct: 898  SELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEE 957

Query: 332  LESTQMLEISVLED-----GEREALNEMSQRLREENTSLSKEVEKLHADK 376
            +E+   + +  +E+        E L    + L E    L + +E+L  +K
Sbjct: 958  IEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEK 1007

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.0 bits (125), Expect = 8e-07
 Identities = 51/224 (22%), Positives = 99/224 (44%), Gaps = 16/224 (7%)

Query: 161 EKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLL 220
           E ++ E+E++ LK+ ++ L++  + L+ ELLE     E      EL+  + L       L
Sbjct: 261 ELEEAEKEIEELKSELEELREELEELQEELLELKEEIE------ELEGEISLLRERLEEL 314

Query: 221 NLKIESLQADNRRLEAQVADHAKTVSE----LEAAKTKIKLLKKKLRTEAEQNREQILAV 276
             ++E L+     L+ ++    + + E    LE  +  +  L++      E+    +  +
Sbjct: 315 ENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEEL 374

Query: 277 QERVTKLQEQAHKAAAIDPDTQSRLQRLK----VLEAEAEDLRKSNMKLQLENSQLARRL 332
           +E    L+E+  +  A   + ++ L+ LK     LE   E L +    L+ E  +L   L
Sbjct: 375 EELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAEL 434

Query: 333 ESTQML--EISVLEDGEREALNEMSQRLREENTSLSKEVEKLHA 374
           E  Q    E++   +   E L E+  RL+E    L++  E+L  
Sbjct: 435 EELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQR 478

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 36/175 (20%), Positives = 76/175 (43%), Gaps = 13/175 (7%)

Query: 161 EKDDCEQEVKNLKNMVQMLQDREKNLEVELL----EYYGLKEQETIVMELQNRLK--LNN 214
           E +  E E++ L+  ++ L+ R + LE +L     +   L+ Q   +     RL+  L  
Sbjct: 352 ELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER 411

Query: 215 MEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQIL 274
           +E R   L+ E  +   +  EA++ +    + ELE    +++   ++L    E+ RE++ 
Sbjct: 412 LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELE 471

Query: 275 AVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLA 329
             ++ +   + +  +        Q+RL  L+ L+   E   +    L    S L+
Sbjct: 472 EAEQALDAAERELAQL-------QARLDSLERLQENLEGFSEGVKALLKNQSGLS 519

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 45/208 (21%), Positives = 101/208 (48%), Gaps = 9/208 (4%)

Query: 167 QEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIES 226
           + ++ L+  +  L+   +N++ EL E     E+    +  +    LN++E RL + +I  
Sbjct: 737 ERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLH-KLEEALNDLEARLSHSRIPE 795

Query: 227 LQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQ 286
           +QA+  +LE +V+     + E+E    ++ L K+ L  E ++ +EQ + ++E++  ++++
Sbjct: 796 IQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKE 855

Query: 287 AHKAAAIDPDTQSRLQRLKV----LEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISV 342
                    + +  L+ L+     LE+   DL+K   +L+ +  +L R++E    LE  +
Sbjct: 856 IENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEE---LEAQI 912

Query: 343 LEDGER-EALNEMSQRLREENTSLSKEV 369
            +  +R   L    + L EE + +    
Sbjct: 913 EKKRKRLSELKAKLEALEEELSEIEDPK 940

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.8 bits (122), Expect = 2e-06
 Identities = 50/226 (22%), Positives = 96/226 (42%), Gaps = 39/226 (17%)

Query: 167 QEVKNLKNMVQMLQDREKNLEVELLEYYG---------------LKEQETIVMELQNRL- 210
            E+  L+   Q+L++R  NLE +L E                  L E E  + EL+  L 
Sbjct: 295 NEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELE 354

Query: 211 -----------KLNNMEGRLLNL--KIESLQADNRRLEAQVADHAKTVSELEAAKTKIKL 257
                      +L  +E RL  L  ++E+L++   +LE Q+A     +  LEA   +++ 
Sbjct: 355 SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED 414

Query: 258 LKKKLRTEAEQNRE-----QILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAE 312
            +++L+ E E+  +     ++  +Q  + +L+E+  +        +  L+ L+    EAE
Sbjct: 415 RRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAE 474

Query: 313 DLRKSNMKLQLENSQLARRLESTQ--MLEISVLEDGEREALNEMSQ 356
               +    + E +QL  RL+S +     +    +G +  L   S 
Sbjct: 475 QALDA---AERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSG 517

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 51/236 (21%), Positives = 106/236 (44%), Gaps = 34/236 (14%)

Query: 160 SEKDDCEQEVKNLKNMVQMLQDR--EKNLEVELLEYYGLKEQETIVMELQN-RLKLNNME 216
            E  + E+E++ L   +Q L+++  E  LEV  LE    +E E +  EL     +++ +E
Sbjct: 246 EELKEAEEELEELTAELQELEEKLEELRLEVSELE----EEIEELQKELYALANEISRLE 301

Query: 217 GRL--LNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQIL 274
            +   L  ++ +L+     LEAQ+        ELE+   ++     +L  + E+ +E++ 
Sbjct: 302 QQKQILRERLANLERQLEELEAQLE-------ELESKLDELAEELAELEEKLEELKEELE 354

Query: 275 AVQERVTKLQE--QAHKAAAIDPDTQSRLQR----------------LKVLEAEAEDLRK 316
           +++  + +L+   +  ++   + + Q    R                ++ LEA  E L  
Sbjct: 355 SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED 414

Query: 317 SNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKL 372
              +LQ E  +L ++LE  ++ E+    +   E L E+ + L     +L +  E+L
Sbjct: 415 RRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREEL 470

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 45/225 (20%), Positives = 92/225 (40%), Gaps = 2/225 (0%)

Query: 149 SDVENPRPCRGSEKDDCEQEVKNLKNMVQMLQDREKNLEVEL-LEYYGLKEQETIVMELQ 207
            ++E        E ++  +++  L+  +  L+   + LE  +      L E E  + EL+
Sbjct: 708 EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE 767

Query: 208 NRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAE 267
            RL+    E      +IE L+A   +L+ ++    + + EL A  T +      LR   E
Sbjct: 768 ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLE 827

Query: 268 QNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQ 327
               +I A + R+  L+EQ  + +       + ++ L+ L  E E   ++ +  +    +
Sbjct: 828 SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEE 887

Query: 328 LARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKL 372
               L S        L + E +  +E+ + L E    L++   +L
Sbjct: 888 ALALLRSELEELSEELRELESKR-SELRRELEELREKLAQLELRL 931

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 42/196 (21%), Positives = 92/196 (46%), Gaps = 16/196 (8%)

Query: 160 SEKDDCEQEVKNLKNMVQMLQDREKNLEVELLEY-YGLKEQETIVMELQNRLKLNNMEGR 218
            E     + ++ L+N ++ L++R + L+ ++      L+E+ET++ EL+  L        
Sbjct: 302 GEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKE 361

Query: 219 LLNLK-----------IESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAE 267
            L  K            E+L+ +   LEA++A+    + EL+     ++   ++L    E
Sbjct: 362 ELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLE 421

Query: 268 QNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQ----RLKVLEAEAEDLRKSNMKLQL 323
             +E++  ++  + +LQ +  +      + + +L+    RLK LE E  +L++   +L+ 
Sbjct: 422 DLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEK 481

Query: 324 ENSQLARRLESTQMLE 339
           E S L  RL+  +  +
Sbjct: 482 ELSSLEARLDRLEAEQ 497

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 41/225 (18%), Positives = 87/225 (38%), Gaps = 26/225 (11%)

Query: 176 VQMLQDREKNLEVELLEYYG-LKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRL 234
           +Q L++R + L+ EL      L+  E  + EL   L   + +   +  +IE L+ +  +L
Sbjct: 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKL 735

Query: 235 EAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKL----------- 283
           + ++ +  + +S LE     +K   K+L    E+  E +  ++E +  L           
Sbjct: 736 KERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPE 795

Query: 284 ------------QEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARR 331
                            +   I+          + LE E ++L++  + L+ +   + + 
Sbjct: 796 IQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKE 855

Query: 332 LESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHADK 376
           +E+    +   LE+   E    +   L      L KE ++L A  
Sbjct: 856 IENLN-GKKEELEEELEELEAALRD-LESRLGDLKKERDELEAQL 898

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 46.2 bits (110), Expect = 5e-05
 Identities = 46/241 (19%), Positives = 98/241 (40%), Gaps = 32/241 (13%)

Query: 166  EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIE 225
            E+ + +L+  +   +  E   E+  LE   +   E  + E++ +L    +E   L  +I+
Sbjct: 778  EEALNDLEARLSHSRIPEIQAELSKLEEE-VSRIEARLREIEQKLNRLTLEKEYLEKEIQ 836

Query: 226  SLQADNRRLEAQVADHAKTVSEL---------EAAKTKIKLL-----KKKLRTEAEQNRE 271
             LQ     L+ Q+    K +  L         E  + +  L         L+ E ++   
Sbjct: 837  ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEA 896

Query: 272  QILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNM----------KL 321
            Q+  ++ ++ +L+ Q  K      + +++L+ L+   +E ED +  +            +
Sbjct: 897  QLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDV 956

Query: 322  QLENSQLARR---LESTQMLEISVLEDGEREALNEMS---QRLREENTSLSKEVEKLHAD 375
            Q E  ++      LE   ML I   E+  +  L+E+     +L EE  ++ + +E+    
Sbjct: 957  QAELQRVEEEIRALEPVNMLAIQEYEEVLK-RLDELKEKRAKLEEERKAILERIEEYEKK 1015

Query: 376  K 376
            K
Sbjct: 1016 K 1016

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 37/201 (18%), Positives = 82/201 (40%), Gaps = 17/201 (8%)

Query: 182 REKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADH 241
            EK  ++E L     +E+E          +    EG  L  + E+L+     +E Q+A  
Sbjct: 194 DEKRQQLERLR----REREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASL 249

Query: 242 ----AKTVSELEAAKTKIKLLKKKLRTEAEQNR----EQILAVQERVTKLQEQAHKAAAI 293
                K   E+   + +++ +++ L    ++ +    E+ L V+E++ +L+ +       
Sbjct: 250 EEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERS 309

Query: 294 DPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLE--DGEREAL 351
             + +  L+  +   A+ E       KL  E  +L R +E  +     + E     +E L
Sbjct: 310 IAEKERELEDAEERLAKLEAEID---KLLAEIEELEREIEEERKRRDKLTEEYAELKEEL 366

Query: 352 NEMSQRLREENTSLSKEVEKL 372
            ++   L E +   ++  ++L
Sbjct: 367 EDLRAELEEVDKEFAETRDEL 387

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 55/231 (23%), Positives = 104/231 (45%), Gaps = 34/231 (14%)

Query: 168 EVKNLKNMVQMLQDREKNLEVELLEYYG-LKEQETIVMELQNRLKLNNMEGRLLNLKIES 226
           E+K ++  ++ ++++E+ L  EL E    LK++  ++   +   +L  +E +L    +E 
Sbjct: 460 ELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEE 519

Query: 227 LQADNR----------RLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQIL-- 274
           L+              +L+ ++    K + +LE  K K+  L+KKL  E E+   ++L  
Sbjct: 520 LEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLD-ELEEELAELLKE 578

Query: 275 ----------AVQERVTKLQEQAHKAAAIDPDTQSRLQR-LKVLEAEAEDLRKSNMKLQL 323
                      ++ER+ +L E  +       D +  L+R  K L+   E+L K+  +L  
Sbjct: 579 LEELGFESVEELEERLKEL-EPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAE 637

Query: 324 ENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHA 374
              +L   L          LE+ E++   E  + LREE   LS+E+  L A
Sbjct: 638 TEKRL-EELRKE-------LEELEKKYSEEEYEELREEYLELSRELAGLRA 680

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 45/197 (22%), Positives = 92/197 (46%), Gaps = 14/197 (7%)

Query: 205 ELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRT 264
           EL+  L+   +E  LL  K++ L+ +   LE +++   + + EL+    + +   ++L++
Sbjct: 217 ELKAELRE--LELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKS 274

Query: 265 EAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLE 324
           E E+ RE++  +QE + +L+E+           +     + +L    E+L     +L+  
Sbjct: 275 ELEELREELEELQEELLELKEEI----------EELEGEISLLRERLEELENELEELEER 324

Query: 325 NSQLARRLEST--QMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHADKCAGVEE 382
             +L  ++E+   ++ E   L +   + L E+ +   E    LS  +E+L     A  EE
Sbjct: 325 LEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREE 384

Query: 383 LVYLKWINACLRYELRN 399
           L  L+   A +R EL  
Sbjct: 385 LAELEAELAEIRNELEE 401

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 6/167 (3%)

Query: 166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIE 225
           EQ +  L+   + L+++   L  EL E +    +E  + EL+  L     E   L  +IE
Sbjct: 350 EQLLAELEEAKEELEEKLSALLEELEELFEALREE--LAELEAELAEIRNELEELKREIE 407

Query: 226 SLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQE 285
           SL+    RL  ++ D  + + ELEA   +++   ++L  E E+  EQ+  +++R+ +L+ 
Sbjct: 408 SLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELER 467

Query: 286 QAHKA----AAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQL 328
           +  +       ++ +  S   RL  LEAE    +     L+   S L
Sbjct: 468 ELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGL 514

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 37/205 (18%), Positives = 90/205 (43%), Gaps = 18/205 (8%)

Query: 166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQN-RLKLNNMEGRLLNLKI 224
           E++++ L+   +  + R + L+ EL E     E   ++ +L+  R +L  +E  L     
Sbjct: 199 EKQLEKLERQAEKAE-RYQELKAELREL----ELALLLAKLKELRKELEELEEEL----- 248

Query: 225 ESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQ 284
             L+ +   L+ ++ +  K + EL++   +++   ++L+ E  + +E+I  ++  ++ L+
Sbjct: 249 SRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLR 308

Query: 285 EQAH-------KAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQM 337
           E+         +      + + +++ LK    E E L +   +L  E  +    LE    
Sbjct: 309 ERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLS 368

Query: 338 LEISVLEDGEREALNEMSQRLREEN 362
             +  LE+       E+++   E  
Sbjct: 369 ALLEELEELFEALREELAELEAELA 393

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 42/213 (19%), Positives = 98/213 (46%), Gaps = 16/213 (7%)

Query: 163 DDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNL 222
           DD E   KNL  +++ ++ R + LE  +     ++E    + E +  L+    E   ++ 
Sbjct: 158 DDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEEL---IKEKEKELEEVLREINEISS 214

Query: 223 KIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAE---QNREQILAVQER 279
           ++  L+ +  +LE +V +  +   E+E  + +++ L+   R   E   +  E+I  +++ 
Sbjct: 215 ELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKE 274

Query: 280 VTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLE 339
           + +L+E+  +   +    +  ++    L    E+      +++   S+L   +   +   
Sbjct: 275 IEELEEKVKELKELKEKAEEYIK----LSEFYEEYLDELREIEKRLSRLEEEINGIEE-R 329

Query: 340 ISVLEDGEREALNEMSQRLREENTSLSKEVEKL 372
           I  LE+ E   L E+ ++L+E    L K +E+L
Sbjct: 330 IKELEEKEER-LEELKKKLKE----LEKRLEEL 357

Length = 880

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 55/220 (25%), Positives = 91/220 (41%), Gaps = 29/220 (13%)

Query: 165 CEQEVKNLKNMVQMLQDREK--NLEVELLEYYGLKEQETIVMELQNRLK-LNNMEGRLLN 221
           C Q V+   ++  + +DRE+   LE EL +   L+E+   V E   R + L   E R   
Sbjct: 457 CGQPVEGSPHVETIEEDRERVEELEAELED---LEEEVEEVEERLERAEDLVEAEDR--- 510

Query: 222 LKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVT 281
             IE L+     LE  +A+  +T+ E      +++    +L  EAE+ RE     +E   
Sbjct: 511 --IERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAE 568

Query: 282 KLQEQA----HKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQM 337
           + +E+      K A +  +    L+R++ L A   D      +L+ +   LA        
Sbjct: 569 EAREEVAELNSKLAELK-ERIESLERIRTLLAAIADAEDEIERLREKREALAEL------ 621

Query: 338 LEISVLEDGEREALNEMSQRLREENTSLSKE-VEKLHADK 376
                  D  RE L E  +R RE      +  +E+   DK
Sbjct: 622 ------NDERRERLAEKRERKRELEAEFDEARIEEAREDK 655

Length = 880

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 44/234 (18%), Positives = 92/234 (39%), Gaps = 22/234 (9%)

Query: 160 SEKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETI-VMELQNRLKLNNMEGR 218
           +E++    E++  +   + ++         L +      + T    +LQ RLK    + R
Sbjct: 102 TEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRR 161

Query: 219 LLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAE---------QN 269
            L  + +SLQA  ++L+A        V +L+    +I+   + L T A            
Sbjct: 162 QLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELAR 221

Query: 270 REQIL-----AVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQ-- 322
           R         A+Q+R  ++ ++A + AA     + R ++L+ LE     L +   +L+  
Sbjct: 222 RAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAY 281

Query: 323 ----LENSQLARRLESTQMLEISVLEDGEREALNE-MSQRLREENTSLSKEVEK 371
               +   Q A   +  Q+L  +     + +A  +  +Q L   N   +  + +
Sbjct: 282 YQAYVRLRQQAAATQRGQVLAGAAQRVAQAQAQAQAQAQLLSSANRPAALRLRR 335

Length = 499

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 45/174 (25%), Positives = 87/174 (50%), Gaps = 25/174 (14%)

Query: 205 ELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRT 264
           EL+  L+   +E  LL L++E L+ +   L+ ++    +   ELE    +++ L++KL  
Sbjct: 217 ELKAELR--ELELALLVLRLEELREELEELQEEL---KEAEEELEELTAELQELEEKL-- 269

Query: 265 EAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRL-QRLKVLEAEAEDLRKSNMKLQL 323
             E+ R ++  ++E + +LQ++ +  A       SRL Q+ ++L     +L +   +L+ 
Sbjct: 270 --EELRLEVSELEEEIEELQKELYALANE----ISRLEQQKQILRERLANLERQLEELEA 323

Query: 324 ENSQLARRLESTQMLEISVLEDGEREA-LNEMSQRLREENTSLSKEVEKLHADK 376
           +  +L  +L+          E  E  A L E  + L+EE  SL  E+E+L A+ 
Sbjct: 324 QLEELESKLD----------ELAEELAELEEKLEELKEELESLEAELEELEAEL 367

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 35/172 (20%), Positives = 79/172 (45%), Gaps = 13/172 (7%)

Query: 220 LNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQER 279
           L  ++  L+A   +LE ++      +  LE    +++   ++L  + E+ + ++ A++E 
Sbjct: 672 LEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEE 731

Query: 280 VTKLQEQAH----KAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLEST 335
           + +LQ +      +   ++ + +   +RL+ LE E E L ++  KL+ E  +L  + ++ 
Sbjct: 732 LEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQAL 791

Query: 336 QMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHADKCAGVEELVYLK 387
           Q          E E L E  +       +L +E+E L   +    +E+  L+
Sbjct: 792 Q---------EELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELE 834

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 43.6 bits (103), Expect = 3e-04
 Identities = 44/222 (19%), Positives = 91/222 (40%), Gaps = 18/222 (8%)

Query: 160 SEKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYG----LKEQETIVMELQNRLKLNNM 215
             K    +        +++ ++  + LE  L E       L+E E  + EL+  L+    
Sbjct: 253 ELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRA 312

Query: 216 EGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILA 275
                   +E L+    +L++      K   +LE  +++++ L ++    A+   E++  
Sbjct: 313 -------LLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKE 365

Query: 276 VQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLEST 335
           ++ER+ +L+++  KA       +  +Q LK    E  +L  +  ++Q E  +L + LE  
Sbjct: 366 LEERLEELEKELEKALERLKQLEEAIQELK---EELAELSAALEEIQEELEELEKELEEL 422

Query: 336 QMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHADKC 377
           +      LE+ E E      Q  + E+  L         +KC
Sbjct: 423 E----RELEELEEEIKKLEEQINQLESKELMIAELAGAGEKC 460

Length = 908

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 38/184 (20%), Positives = 75/184 (40%), Gaps = 22/184 (11%)

Query: 205 ELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRT 264
            L+ +++    +   L  +++SL+ +   LEAQ+ + A  + +L      +      L  
Sbjct: 49  ALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108

Query: 265 EAEQNREQILAVQ--------------ERVTKLQEQAHKAAAIDPD--TQSRLQRLKVLE 308
           + E+ + + LA Q                V+    Q     AI       +R +R+  L+
Sbjct: 109 Q-EREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALK 167

Query: 309 AEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKE 368
           A  + L     ++  E ++L   L S Q  + + L     + L E  + L + N+ LS +
Sbjct: 168 ATLKQLAAVRAEIAAEQAEL-TTLLSEQRAQQAKLA----QLLEERKKTLAQLNSELSAD 222

Query: 369 VEKL 372
            +KL
Sbjct: 223 QKKL 226

Length = 420

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 43.2 bits (103), Expect = 3e-04
 Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 27/160 (16%)

Query: 246 SELEAAKTKIKLLKKKLRTEAEQ-NREQILAVQERVTKLQEQAHKAAAI-DPDTQSRLQR 303
           ++++ A+ + K + ++ + EAE   +E +L  +E + KL+ +  K       + Q   +R
Sbjct: 31  AKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKR 90

Query: 304 LK----VLEAEAEDLRKSNMKLQLENSQLARRLES----------------TQMLEISVL 343
           L      L+ + E L K   +L+ +  +L ++ +                  ++  IS L
Sbjct: 91  LLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGL 150

Query: 344 --EDGEREALNEMSQRLREENTSLSKEVE---KLHADKCA 378
             E+ +   L ++ +  R E   L KE+E   K  ADK A
Sbjct: 151 TAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADKKA 190

Length = 520

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 50/246 (20%), Positives = 99/246 (40%), Gaps = 16/246 (6%)

Query: 166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIE 225
           E+  + LK +++  + + + LE +L E     E     +E +   +L  +E      + E
Sbjct: 170 EKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEE-LKELKKLEEIQEEQEEE 228

Query: 226 SLQADNRRLEAQVADHAKTVSELEAAKTKIKLLK-------KKLRTEAEQNREQILAVQE 278
            L+ +   LE ++A+  +    LE  K ++  ++       K    E  +    +  ++E
Sbjct: 229 ELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEE 288

Query: 279 RVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQML 338
           ++ +L+E   +   +    +  L+ L+ L  E E+L +  +K   E  +           
Sbjct: 289 KIERLEELEREIEEL----EEELEGLRALLEELEELLE-KLKSLEERLEKLEEKLEKLES 343

Query: 339 EISVLEDGEREALNEMSQRLREENT---SLSKEVEKLHADKCAGVEELVYLKWINACLRY 395
           E+  L + + E    + +RL+E       L KE+EK         E +  LK   A L  
Sbjct: 344 ELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSA 403

Query: 396 ELRNYQ 401
            L   Q
Sbjct: 404 ALEEIQ 409

Length = 908

>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC

 Score = 43.4 bits (102), Expect = 4e-04
 Identities = 35/215 (16%), Positives = 74/215 (34%), Gaps = 17/215 (7%)

Query: 161 EKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLL 220
                           Q+L+   K+L         L++ +     L  + +    + +  
Sbjct: 206 LTLCTPCMPDTYHERKQVLEKELKHLREA------LQQTQQSHAYLTQKREAQEEQLKKQ 259

Query: 221 NLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLR-TEAEQNREQILA-VQE 278
            L ++ L+A    L AQ A   +T   +  A+    L       T+ EQ  ++I   +Q 
Sbjct: 260 QL-LKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQS 318

Query: 279 RVTKLQEQAHKAAAIDPDTQSRLQR---LKVLEAEAEDLRKSNMKLQLENSQLARRLEST 335
           ++    +   K AA      S  ++   L+ L ++   +R ++           ++   T
Sbjct: 319 KMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLT 378

Query: 336 QML-----EISVLEDGEREALNEMSQRLREENTSL 365
           Q +     + + L    +    E+    RE+ T  
Sbjct: 379 QHIHTLQQQKTTLTQKLQSLCKELDILQREQATID 413

All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 42.3 bits (99), Expect = 5e-04
 Identities = 37/158 (23%), Positives = 74/158 (46%), Gaps = 14/158 (8%)

Query: 223 KIESLQADNR--RLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERV 280
           +++ ++   R  R E   A   K  +E E    + +L  +K R E E  R+++ A ++ +
Sbjct: 75  QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSEL--QKARQEREAVRQELAAARQNL 132

Query: 281 TKLQEQAHKAAAIDPDTQSRLQRL----KVLEAEAEDLRKSNMKLQLENSQLARRLESTQ 336
            K Q++  +      D Q+RL+ L    + LEA+A+ L+ S  +LQ   +QL      +Q
Sbjct: 133 AKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQL-----KSQ 187

Query: 337 MLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHA 374
           +L++  L   + E   +          + ++E+ +  A
Sbjct: 188 VLDLK-LRSAQIEQEAQNLATRANAAQARTEELARRAA 224

Length = 499

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 20/104 (19%), Positives = 53/104 (50%), Gaps = 11/104 (10%)

Query: 248 LEAAKTKIKLLKKK---LRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRL 304
           L   + ++  L+++   L+ +  + +++   +++ ++ L+ +  +        Q  L R+
Sbjct: 68  LPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELER-------LQKELARI 120

Query: 305 KVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGER 348
           K L A A +L + N +L+ E ++L +  E+ +  E   L++ E+
Sbjct: 121 KQLSANAIELDEENRELREELAELKQENEALEA-ENERLQENEQ 163

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.7 bits (101), Expect = 6e-04
 Identities = 28/151 (18%), Positives = 64/151 (42%), Gaps = 13/151 (8%)

Query: 160 SEKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRL 219
              D+   E+  L      L++R ++LE  +         E  + +L+ +++  + +   
Sbjct: 803 EALDELRAELTLLNEEAANLRERLESLERRI------AATERRLEDLEEQIEELSEDIES 856

Query: 220 LNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQER 279
           L  +IE L+     LE+++       + LE A          LR+E E+  E++  ++ +
Sbjct: 857 LAAEIEELEELIEELESELEALLNERASLEEAL-------ALLRSELEELSEELRELESK 909

Query: 280 VTKLQEQAHKAAAIDPDTQSRLQRLKVLEAE 310
            ++L+ +  +        + RL+ L+V    
Sbjct: 910 RSELRRELEELREKLAQLELRLEGLEVRIDN 940

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.7 bits (101), Expect = 6e-04
 Identities = 41/219 (18%), Positives = 89/219 (40%), Gaps = 18/219 (8%)

Query: 179 LQDREKNLEVELL---------EYYGLKEQETIVMELQNRL--KLNNMEGRLLNLKIESL 227
           L+   + LE+ LL         E   L+E+     E    L  +L  +E +L  L++E  
Sbjct: 218 LKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVS 277

Query: 228 QADNRRLEAQ--VADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQE 285
           + +    E Q  +   A  +S LE  K  ++     L  + E+   Q+  ++ ++ +L E
Sbjct: 278 ELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAE 337

Query: 286 QAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLED 345
           +  +      + +  L+ L+    E E   +  ++ +LE  +       +++ ++     
Sbjct: 338 ELAELEEKLEELKEELESLEAELEELEAELE-ELESRLEELEEQLETLRSKVAQLE---- 392

Query: 346 GEREALNEMSQRLREENTSLSKEVEKLHADKCAGVEELV 384
            +  +LN   +RL      L    E+L  +    +++L 
Sbjct: 393 LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE 431

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 34/165 (20%), Positives = 69/165 (41%), Gaps = 15/165 (9%)

Query: 222 LKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVT 281
           L I+ L  +  RLE ++ +  K + + +A    +    + L  E E    Q+  ++  + 
Sbjct: 10  LAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQ 69

Query: 282 KLQEQAHKA-------------AAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQL 328
           +++E+  +A              A++ + Q   +R+  LE E  +L +   KL+ E   L
Sbjct: 70  EIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDL 129

Query: 329 ARRLESTQML--EISVLEDGEREALNEMSQRLREENTSLSKEVEK 371
             RLE  +    E     + E   + E  Q L  +   L ++++ 
Sbjct: 130 KERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDP 174

Length = 239

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 16/106 (15%)

Query: 270 REQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLA 329
           RE++  +Q+ + +LQE+  +            ++L  L+ E ++L++    L+ E  +L 
Sbjct: 65  RERLPELQQELAELQEELAELQ----------EQLAELQQENQELKQELSTLEAELERLQ 114

Query: 330 RRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHAD 375
           + L   + L  + +E      L+E ++ LREE   L +E E L A+
Sbjct: 115 KELARIKQLSANAIE------LDEENRELREELAELKQENEALEAE 154

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 4/99 (4%)

Query: 233 RLEAQVADHAKTVSELEAAKTKIKLLKKK---LRTEAEQNREQILAVQERVTKLQEQAHK 289
           RL     + A+   EL   + ++  L+++   L+ E      ++  +Q+ + ++++ +  
Sbjct: 67  RLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSAN 126

Query: 290 AAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQL 328
           A  +D + +   + L  L+ E E L   N +LQ EN Q 
Sbjct: 127 AIELDEENRELREELAELKQENEALEAENERLQ-ENEQR 164

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 41.1 bits (97), Expect = 0.002
 Identities = 40/169 (23%), Positives = 78/169 (46%), Gaps = 13/169 (7%)

Query: 218 RLLNLKIESLQADNRRL--EAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILA 275
           R+   K+ S +   +R+  EA+          L  AK ++  L+ +L  E ++ R ++  
Sbjct: 21  RIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQR 80

Query: 276 VQERVTKLQEQ-AHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLES 334
           ++ R+ + +E    K  ++D   ++  ++ K L  + ++L +   +L+   ++    LE 
Sbjct: 81  LERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELE- 139

Query: 335 TQMLEISVL--EDGEREALNEMSQRLREENTSLSKEVE---KLHADKCA 378
                IS L  E+ +   L E+ +  R E   L KE+E   K  ADK A
Sbjct: 140 ----RISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEAKEEADKKA 184

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|218661 pfam05622, HOOK, HOOK protein

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 13/154 (8%)

Query: 223 KIESLQADNRRL-EAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVT 281
           K+  LQ +N+ L   Q     + ++EL+           +L T+     ++IL +Q++V 
Sbjct: 460 KLIRLQHENKMLRLGQEGSENERITELQQLLEDANRRNNELETQLRLANQRILELQQQVE 519

Query: 282 KLQ----EQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQM 337
            LQ    EQ  K+     +  S L+    LE   E L ++N +LQ +  Q+   LE  Q 
Sbjct: 520 DLQKALQEQGSKS-----EDSSLLKS--KLEEHLEQLHEANEELQKKREQIE-ELEPDQD 571

Query: 338 LEISVLEDGEREALNEMSQRLREENTSLSKEVEK 371
             +S        AL +  + +R       K VEK
Sbjct: 572 QNLSRKIAELEAALQKKDEDMRAMEERYKKYVEK 605

This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. Length = 713

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 23/117 (19%), Positives = 52/117 (44%), Gaps = 10/117 (8%)

Query: 147 PKSDVENPRPCRGSEKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMEL 206
           P+         R       E+ +K L+  V+ L++    L+ EL      +E +  + +L
Sbjct: 403 PREKEGTEEEERREITVY-EKRIKKLEETVERLEEENSELKREL------EELKREIEKL 455

Query: 207 QNRLK--LNNMEGRLL-NLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKK 260
           ++ L+     +  ++  + +I +      RLE ++ +  K V ELE    +++ ++K
Sbjct: 456 ESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRK 512

Length = 652

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 40.3 bits (95), Expect = 0.003
 Identities = 52/220 (23%), Positives = 84/220 (38%), Gaps = 53/220 (24%)

Query: 210 LKLNNMEGRLLNLKIESLQADNRRLEAQ----VADHAKT---------------VSELEA 250
           L  +N E  L   + +  +A    L  +    VA  A +               VS  EA
Sbjct: 435 LTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEA 494

Query: 251 AKTKIKLLKK--KLRTEAEQ---------NREQILAVQERVTKLQEQAHKAAAIDPDTQS 299
                +LL++  + R  AEQ           EQ L  Q+R  +L  +  K    + D + 
Sbjct: 495 WDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDED 554

Query: 300 RLQRLKV-LEAEAEDL---------RKSNMKLQLEN-SQLARRLES------------TQ 336
            L++L+  LEA  E L         R+  ++ QLE      +RL +             +
Sbjct: 555 ELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALAR 614

Query: 337 MLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHADK 376
           + E S  E  + + + E  Q+L E    L+ E ++L A K
Sbjct: 615 LREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARK 654

Length = 1486

>gnl|CDD|204784 pfam11932, DUF3450, Protein of unknown function (DUF3450)

 Score = 39.1 bits (92), Expect = 0.004
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 3/93 (3%)

Query: 271 EQILAVQERVTKLQEQAH-KAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLA 329
           +Q LA  ++      Q+  K       TQ  L  ++ L  E E+LR  N +LQ   +   
Sbjct: 25  DQALAAAQQTVAAAAQSQKKIDKWADQTQELLAEIRQLLKEIENLRVYNDQLQRLVANQQ 84

Query: 330 RRLES--TQMLEISVLEDGEREALNEMSQRLRE 360
           + + S   Q+ +I     G    +  M   L +
Sbjct: 85  QEIASLQQQIEQIEKTRQGLVPLMYRMIDGLEQ 117

This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are about 260 amino acids in length. Length = 250

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	594
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.8
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	97.6
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	97.6
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	97.55
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	97.52
PRK11637	428	AmiB activator; Provisional	97.47
PHA02562	562	46 endonuclease subunit; Provisional	97.46
PRK03918	880	chromosome segregation protein; Provisional	97.45
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.42
PRK03918	880	chromosome segregation protein; Provisional	97.41
PRK02224	880	chromosome segregation protein; Provisional	97.41
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	97.38
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.36
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.36
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.35
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.27
KOG4673	961	consensus Transcription factor TMF, TATA element m	97.26
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	97.22
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.21
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	97.09
PRK02224	880	chromosome segregation protein; Provisional	97.07
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	97.01
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.0
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	96.96
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.91
PF00038	312	Filament: Intermediate filament protein; InterPro:	96.83
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	96.82
PRK01156	895	chromosome segregation protein; Provisional	96.77
PLN03188	1320	kinesin-12 family protein; Provisional	96.76
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	96.69
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	96.66
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	96.58
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	96.57
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.57
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	96.51
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	96.44
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.41
PRK09039	343	hypothetical protein; Validated	96.35
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.34
PRK01156	895	chromosome segregation protein; Provisional	96.23
COG4942	420	Membrane-bound metallopeptidase [Cell division and	96.23
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	96.19
KOG1937	521	consensus Uncharacterized conserved protein [Funct	96.15
PRK04863	1486	mukB cell division protein MukB; Provisional	96.1
PRK04863	1486	mukB cell division protein MukB; Provisional	96.08
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	96.04
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	96.02
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	95.96
PRK11637	428	AmiB activator; Provisional	95.96
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	95.95
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	95.95
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.94
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	95.92
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	95.86
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	95.85
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	95.81
PF14662	193	CCDC155: Coiled-coil region of CCDC155	95.8
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	95.73
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	95.68
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	95.6
PRK04778	569	septation ring formation regulator EzrA; Provision	95.52
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	95.51
PRK09039	343	hypothetical protein; Validated	95.49
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	95.49
PHA02562	562	46 endonuclease subunit; Provisional	95.4
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	95.35
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	95.31
COG4942	420	Membrane-bound metallopeptidase [Cell division and	95.3
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	95.29
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	95.29
KOG0963	629	consensus Transcription factor/CCAAT displacement	95.18
KOG0971	1243	consensus Microtubule-associated protein dynactin	95.13
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	95.1
KOG0963	629	consensus Transcription factor/CCAAT displacement	95.05
KOG0996	1293	consensus Structural maintenance of chromosome pro	95.02
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	95.01
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	94.95
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	94.94
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	94.93
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	94.9
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	94.89
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	94.87
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	94.86
PF11365	96	DUF3166: Protein of unknown function (DUF3166); In	94.85
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	94.83
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	94.82
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	94.81
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	94.78
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	94.73
KOG0979	1072	consensus Structural maintenance of chromosome pro	94.71
KOG0933	1174	consensus Structural maintenance of chromosome pro	94.67
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	94.65
PF06548	488	Kinesin-related: Kinesin-related; InterPro: IPR010	94.55
KOG4673	961	consensus Transcription factor TMF, TATA element m	94.39
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	94.35
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	94.33
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	94.29
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	94.26
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	94.22
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	94.22
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	94.22
COG2433	652	Uncharacterized conserved protein [Function unknow	94.12
KOG0249	916	consensus LAR-interacting protein and related prot	93.95
KOG3091	508	consensus Nuclear pore complex, p54 component (sc	93.92
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	93.78
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	93.67
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	93.64
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	93.49
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	93.43
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	93.28
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	93.17
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	93.17
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	93.16
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	93.1
COG5185	622	HEC1 Protein involved in chromosome segregation, i	93.01
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	92.97
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.85
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	92.8
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	92.63
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	92.57
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	92.57
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	92.56
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	92.3
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	92.23
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	92.18
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	92.13
PRK11281	1113	hypothetical protein; Provisional	92.08
KOG1937	521	consensus Uncharacterized conserved protein [Funct	91.97
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	91.88
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	91.88
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	91.88
PF10226	195	DUF2216: Uncharacterized conserved proteins (DUF22	91.74
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	91.72
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	91.61
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	91.6
COG2433	652	Uncharacterized conserved protein [Function unknow	91.47
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	91.4
PRK04778	569	septation ring formation regulator EzrA; Provision	91.34
PF10186	302	Atg14: UV radiation resistance protein and autopha	91.23
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	91.22
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	90.98
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	90.84
PRK10361	475	DNA recombination protein RmuC; Provisional	90.81
KOG0933	1174	consensus Structural maintenance of chromosome pro	90.81
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	90.45
PLN02939	977	transferase, transferring glycosyl groups	90.06
COG5185	622	HEC1 Protein involved in chromosome segregation, i	90.06
PRK12704	520	phosphodiesterase; Provisional	89.75
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	89.69
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	89.42
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	89.38
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	89.37
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	89.25
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	89.18
PF10186	302	Atg14: UV radiation resistance protein and autopha	89.16
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	89.15
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	89.08
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	88.97
KOG4001	259	consensus Axonemal dynein light chain [Cytoskeleto	88.79
PF00038	312	Filament: Intermediate filament protein; InterPro:	88.78
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	88.71
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	88.57
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	88.52
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	88.48
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	88.36
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	88.17
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	88.13
PRK10929	1109	putative mechanosensitive channel protein; Provisi	87.88
PRK10884	206	SH3 domain-containing protein; Provisional	87.73
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	87.7
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	87.57
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	87.48
PF14662	193	CCDC155: Coiled-coil region of CCDC155	87.43
PF06632	342	XRCC4: DNA double-strand break repair and V(D)J re	87.36
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	87.17
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	87.13
PF13514	1111	AAA_27: AAA domain	86.86
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	86.7
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	86.45
KOG0249	916	consensus LAR-interacting protein and related prot	86.44
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	86.05
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	85.66
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	85.59
PRK10884	206	SH3 domain-containing protein; Provisional	85.41
PRK09343	121	prefoldin subunit beta; Provisional	85.31
PRK10869	553	recombination and repair protein; Provisional	85.22
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	84.91
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	84.4
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	84.22
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	83.73
PF13514	1111	AAA_27: AAA domain	83.6
KOG0018	1141	consensus Structural maintenance of chromosome pro	83.44
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	83.19
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	82.63
KOG0979	1072	consensus Structural maintenance of chromosome pro	82.18
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	82.11
PF04859	131	DUF641: Plant protein of unknown function (DUF641)	82.03
PF15294	278	Leu_zip: Leucine zipper	81.02
KOG0964	1200	consensus Structural maintenance of chromosome pro	80.94
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	80.71
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	80.58
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	80.33

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.80  E-value=0.012  Score=70.52  Aligned_cols=208  Identities=22%  Similarity=0.262  Sum_probs=114.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH-------
Q 045262          165 CEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQ-------  237 (594)
Q Consensus       165 ~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~q-------  237 (594)
                      .+.++..+....+.++++...|+.++-++.      ..+++|+++|..-.+++..+...|+-|+....-++++       
T Consensus       783 le~~l~~~~~~~~~~~~~~~~~ee~~~~lr------~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d  856 (1293)
T KOG0996|consen  783 LERALSKMSDKARQHQEQLHELEERVRKLR------ERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVD  856 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Confidence            344555555566666666655655555544      3477788877777777666666555555443333322       


Q ss_pred             -------HHHHHhHHHHHHHH-----H-HHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHH----HHhhcCChh
Q 045262          238 -------VADHAKTVSELEAA-----K-TKIKLLKKKLRTEA----EQNREQILAVQERVTKLQEQA----HKAAAIDPD  296 (594)
Q Consensus       238 -------v~e~~~v~~ELE~a-----r-~kir~LqkKl~~~a----~q~K~qi~~Lkq~v~~Lq~~E----~e~~~~d~E  296 (594)
                             -.....+..|++.+     + ++|+.||.+|....    +..+..+..+.+++..|.+.=    ..+..++--
T Consensus       857 ~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~  936 (1293)
T KOG0996|consen  857 KKRLKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRN  936 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCccc
Confidence                   22233344444444     5 88888888877543    233444555555555553320    111122222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhH-HHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 045262          297 TQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGE-REALNEMSQRLREENTSLSKEVEKLHAD  375 (594)
Q Consensus       297 ~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~e-v~~i~ee~~~LR~~NedL~kQVEqLq~d  375 (594)
                      +++=-..+.+||-++..++...+.|-.+-..+..+..--+..+.   +..+ ...++++...++..++++.+++-.|+.+
T Consensus       937 i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~---e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~ 1013 (1293)
T KOG0996|consen  937 IAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYK---EAEESLKEIKKELRDLKSELENIKKSENELKAE 1013 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            22222234445555555555555555544444444333222222   2211 2456788899999999999999999999


Q ss_pred             hcchhhH
Q 045262          376 KCAGVEE  382 (594)
Q Consensus       376 RfseVEE  382 (594)
                      |.. ++=
T Consensus      1014 rId-~~~ 1019 (1293)
T KOG0996|consen 1014 RID-IEN 1019 (1293)
T ss_pred             hcc-HHH
Confidence            987 553

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=97.60  E-value=0.099  Score=61.16  Aligned_cols=8  Identities=38%  Similarity=0.210  Sum_probs=3.2

Q ss_pred             HHHhhhcC
Q 045262          487 KLRKLVRG  494 (594)
Q Consensus       487 KLKKw~~g  494 (594)
                      ++-.++-|
T Consensus       614 ~~~~~~lg  621 (1164)
T TIGR02169       614 PAFKYVFG  621 (1164)
T ss_pred             HHHHHHCC
Confidence            33444444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=97.60  E-value=0.049  Score=63.66  Aligned_cols=29  Identities=10%  Similarity=0.276  Sum_probs=19.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045262          165 CEQEVKNLKNMVQMLQDREKNLEVELLEY  193 (594)
Q Consensus       165 ~e~EI~~LR~lVeeLqERE~~LE~ELLEy  193 (594)
                      ...++..+...+..+++.-..++.++.++
T Consensus       256 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  284 (1164)
T TIGR02169       256 LTEEISELEKRLEEIEQLLEELNKKIKDL  284 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45667777777777777766666666654

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=97.55  E-value=0.14  Score=59.69  Aligned_cols=51  Identities=29%  Similarity=0.270  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHHHhhc
Q 045262          350 ALNEMSQRLREENTSLSKEVEKLHADKCAGVEELVYLKWINACLRYELRNY  400 (594)
Q Consensus       350 ~i~ee~~~LR~~NedL~kQVEqLq~dRfseVEELVYLRWVNACLR~ELrn~  400 (594)
                      .+.++...++.....+..+++.++.....--.++-.++.--+=++.++.++
T Consensus       884 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l  934 (1179)
T TIGR02168       884 SLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL  934 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555666555554444455555555544455555444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=97.52  E-value=0.16  Score=59.11  Aligned_cols=29  Identities=24%  Similarity=0.460  Sum_probs=15.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262          164 DCEQEVKNLKNMVQMLQDREKNLEVELLE  192 (594)
Q Consensus       164 d~e~EI~~LR~lVeeLqERE~~LE~ELLE  192 (594)
                      ....++..|+..+..++..-..++.++.+
T Consensus       674 ~l~~e~~~l~~~~~~l~~~l~~~~~~~~~  702 (1179)
T TIGR02168       674 ERRREIEELEEKIEELEEKIAELEKALAE  702 (1179)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44456666666655555554444444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK11637 AmiB activator; Provisional

Probab=97.47  E-value=0.11  Score=56.10  Aligned_cols=68  Identities=10%  Similarity=0.116  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 045262          305 KVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHA  374 (594)
Q Consensus       305 keLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~  374 (594)
                      .+|+.+..+|.....+++.++.+|.......+.....+.  ........+...|+..-..|.++|+.|+.
T Consensus       187 ~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~--~~~~~~~~~l~~l~~~~~~L~~~I~~l~~  254 (428)
T PRK11637        187 AELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLE--SSLQKDQQQLSELRANESRLRDSIARAER  254 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556666666666666666666554444333332211  11112233445555566666666666554

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.46  E-value=0.045  Score=59.78  Aligned_cols=35  Identities=20%  Similarity=0.203  Sum_probs=13.8

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 045262          203 VMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQ  237 (594)
Q Consensus       203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~q  237 (594)
                      +.++++++..-..++..+...+..|+.+...|..+
T Consensus       215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~  249 (562)
T PHA02562        215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVMD  249 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            33444444333333334444444444443333333

>PRK03918 chromosome segregation protein; Provisional

Probab=97.45  E-value=0.1  Score=60.14  Aligned_cols=115  Identities=19%  Similarity=0.278  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045262          170 KNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELE  249 (594)
Q Consensus       170 ~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE  249 (594)
                      ..++...+.++.+-..|+..+-++   .+.+..+..++.++.....++..+..++..++.+...++.++..+.....+++
T Consensus       165 ~~~~~~~~~~~~~~~~l~~~l~~l---~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~~~  241 (880)
T PRK03918        165 KNLGEVIKEIKRRIERLEKFIKRT---ENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIE  241 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555443   33344567777777777778888888888887777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHH
Q 045262          250 AAKTKIKLLKKKLRTE---AEQNREQILAVQERVTKLQEQA  287 (594)
Q Consensus       250 ~ar~kir~LqkKl~~~---a~q~K~qi~~Lkq~v~~Lq~~E  287 (594)
                      .++.++..++.+++..   ......++..+++++..|+...
T Consensus       242 ~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~  282 (880)
T PRK03918        242 ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKV  282 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777655443   3344445556666666655543

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.42  E-value=0.11  Score=62.91  Aligned_cols=99  Identities=28%  Similarity=0.324  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHH-------HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 045262          166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGL-KEQETIVM-------ELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQ  237 (594)
Q Consensus       166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~L-KEQEa~v~-------ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~q  237 (594)
                      -.++..++..+..+.+.-..++.++-++..- .+-+..|.       ++...+.....+.-.+..++..++.+...++.+
T Consensus       231 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~  310 (1163)
T COG1196         231 LAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRER  310 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555555444332 22222333       333333333333333445566666666666665


Q ss_pred             HHHHHhHHHHH----HHHHHHHHHHHHHHHH
Q 045262          238 VADHAKTVSEL----EAAKTKIKLLKKKLRT  264 (594)
Q Consensus       238 v~e~~~v~~EL----E~ar~kir~LqkKl~~  264 (594)
                      +.....-..++    ...+.++..++..+..
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (1163)
T COG1196         311 LEELENELEELEERLEELKEKIEALKEELEE  341 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55554443222    2334444444444443

>PRK03918 chromosome segregation protein; Provisional

Probab=97.41  E-value=0.099  Score=60.27  Aligned_cols=26  Identities=23%  Similarity=0.507  Sum_probs=14.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262          165 CEQEVKNLKNMVQMLQDREKNLEVEL  190 (594)
Q Consensus       165 ~e~EI~~LR~lVeeLqERE~~LE~EL  190 (594)
                      +..+|..|...+..|+++-..++.++
T Consensus       457 ~~~ei~~l~~~~~~l~~~~~~l~~~~  482 (880)
T PRK03918        457 YTAELKRIEKELKEIEEKERKLRKEL  482 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666666665555555443

>PRK02224 chromosome segregation protein; Provisional

Probab=97.41  E-value=0.1  Score=60.48  Aligned_cols=115  Identities=18%  Similarity=0.193  Sum_probs=55.3

Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 045262          206 LQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAK----TVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVT  281 (594)
Q Consensus       206 Le~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~----v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~  281 (594)
                      +++.+.....+++....++..|+.+...|++.+.++..    +..+++.+..++..+++++.....+    +.-|. .+.
T Consensus       521 l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~le-~~~  595 (880)
T PRK02224        521 LEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKER----IESLE-RIR  595 (880)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH----HHHHH-HHH
Confidence            33334444445555555666666666666666666655    3334444445555555555433221    11111 111


Q ss_pred             HHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhh
Q 045262          282 KLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLEST  335 (594)
Q Consensus       282 ~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sA  335 (594)
                      .++          .+++.....+.+|+.++.+|.....+++.+..++-.+++..
T Consensus       596 ~~~----------~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l  639 (880)
T PRK02224        596 TLL----------AAIADAEDEIERLREKREALAELNDERRERLAEKRERKREL  639 (880)
T ss_pred             HHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111          22333334455555555555555555555555555555444

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=97.38  E-value=0.25  Score=58.32  Aligned_cols=225  Identities=19%  Similarity=0.169  Sum_probs=136.8

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045262          161 EKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVAD  240 (594)
Q Consensus       161 e~~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e  240 (594)
                      .++..+.-|.+|-..|..|.----+         .+.|+-.++..+++++..-.++...-.+....-.+|.++|+.++++
T Consensus       327 qkd~~~~~~~~~~~e~~~~~~~l~~---------~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaq  397 (980)
T KOG0980|consen  327 QKDPRELQIEQLSREVAQLKAQLEN---------LKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQ  397 (980)
T ss_pred             cCChhhHHHHHHHHHHHHHhhhhhh---------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            4455566677777766665432211         2335666788888888877777777777666667778899999999


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHH-----------HHHHHH
Q 045262          241 HAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQR-----------LKVLEA  309 (594)
Q Consensus       241 ~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~-----------lkeLE~  309 (594)
                      ..+.+.+++.|...+.++.++....    ..+.-.+|+..+.|...-.+...+.+++.+++..           ..+|..
T Consensus       398 l~a~r~q~eka~~~~ee~e~~~l~~----e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d  473 (980)
T KOG0980|consen  398 LLASRTQLEKAQVLVEEAENKALAA----ENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLND  473 (980)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            9999999999998887777665433    3344445555555554444444444444444322           223333


Q ss_pred             HHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhcchhhHHHHHHHH
Q 045262          310 EAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHADKCAGVEELVYLKWI  389 (594)
Q Consensus       310 Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~dRfseVEELVYLRWV  389 (594)
                      -++++.|.-.++.---.+....|++.+.....  -..+++.+...+..+.+......-|++-+-..+=..+.|||--+=-
T Consensus       474 ~le~~~~~~~~~~~K~e~~~~~le~l~~El~~--l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e  551 (980)
T KOG0980|consen  474 QLEELQRAAGRAETKTESQAKALESLRQELAL--LLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAREEE  551 (980)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            33333333333333333333444444332221  2345566666678888888888888888888887888888876631


Q ss_pred             HHHHHHHHhhc
Q 045262          390 NACLRYELRNY  400 (594)
Q Consensus       390 NACLR~ELrn~  400 (594)
                      =+-+|.|+-.-
T Consensus       552 ~~~~~~e~e~s  562 (980)
T KOG0980|consen  552 REALRLEAERS  562 (980)
T ss_pred             HHHHHHHHHhh
Confidence            22278887543

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.36  E-value=0.14  Score=58.35  Aligned_cols=191  Identities=20%  Similarity=0.266  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 045262          166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTV  245 (594)
Q Consensus       166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~  245 (594)
                      ++|+..|+..|.+|..+-..++.++-.                    -++++..+...+...+.++.+|+.++.-..++.
T Consensus       327 ~~el~~l~~~l~~l~~~i~~~~~~~~~--------------------l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~  386 (594)
T PF05667_consen  327 EQELEELQEQLDELESQIEELEAEIKM--------------------LKSSLKQLEEELEEKEAENEELEEELKLKKKTV  386 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567777777777776655555544433                    333444455555555555555555554443333


Q ss_pred             HHH--------------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q 045262          246 SEL--------------EAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEA  311 (594)
Q Consensus       246 ~EL--------------E~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev  311 (594)
                      .=|              +....++..|+.+...-...-.+++..|+...          .....+...+++.++.|..++
T Consensus       387 ~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~----------~~~~~e~~~~~~~ik~~r~~~  456 (594)
T PF05667_consen  387 ELLPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKA----------SNRESESKQKLQEIKELREEI  456 (594)
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----------hhcchHHHHHHHHHHHHHHHH
Confidence            322              33333333333333322222222233332222          234466777888888888777


Q ss_pred             HHHHHHhHHHHHHhhHhHHhhhhhhhhhhcc--hhh--hH---HHHHHHHHHHHHHhhHHHHHHHHHHh---hhhcchhh
Q 045262          312 EDLRKSNMKLQLENSQLARRLESTQMLEISV--LED--GE---REALNEMSQRLREENTSLSKEVEKLH---ADKCAGVE  381 (594)
Q Consensus       312 ~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~--~E~--~e---v~~i~ee~~~LR~~NedL~kQVEqLq---~dRfseVE  381 (594)
                      .++-.....-++.-..|...++..-..++-.  +.-  ++   +.+=++++++.-.+...|.|++..|.   ..=|+.++
T Consensus       457 k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~d  536 (594)
T PF05667_consen  457 KEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTD  536 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            7777766666666666666666554443211  100  22   34557788888889999999988775   35699999


Q ss_pred             HHHHH
Q 045262          382 ELVYL  386 (594)
Q Consensus       382 ELVYL  386 (594)
                      ||||-
T Consensus       537 Elifr  541 (594)
T PF05667_consen  537 ELIFR  541 (594)
T ss_pred             HHHHH
Confidence            99994

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.36  E-value=0.32  Score=59.01  Aligned_cols=63  Identities=22%  Similarity=0.312  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 045262          167 QEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLE  235 (594)
Q Consensus       167 ~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq  235 (594)
                      .+|..+...+..+...-..++.++-.+...      +.++.+++.....++..+...+..++.+.+.++
T Consensus       674 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  736 (1163)
T COG1196         674 EELAELEAQLEKLEEELKSLKNELRSLEDL------LEELRRQLEELERQLEELKRELAALEEELEQLQ  736 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444433332      344444444444444444444443333333333

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.35  E-value=0.025  Score=63.61  Aligned_cols=221  Identities=22%  Similarity=0.271  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 045262          166 EQEVKNLKNMVQMLQDREKNLEVELLE-YYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAK-  243 (594)
Q Consensus       166 e~EI~~LR~lVeeLqERE~~LE~ELLE-yy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~-  243 (594)
                      +.||..|+.-|.+|+.+=...+..+.. --.+.++...+-.++.++..-+..++.|...+.-|-.||.||..++....+ 
T Consensus       112 e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~  191 (546)
T KOG0977|consen  112 EIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQ  191 (546)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            344555555555554443222222211 122344555666677776666667777777777777777777777766654 


Q ss_pred             -----------------HHHHHHHHH----HHHHHHHHHHHHHH-HHhHHHH-HHHHHHHHHHHHHHHHh-hcCC----h
Q 045262          244 -----------------TVSELEAAK----TKIKLLKKKLRTEA-EQNREQI-LAVQERVTKLQEQAHKA-AAID----P  295 (594)
Q Consensus       244 -----------------v~~ELE~ar----~kir~LqkKl~~~a-~q~K~qi-~~Lkq~v~~Lq~~E~e~-~~~d----~  295 (594)
                                       +.++|+.++    .+|++++++.+++. ..++... ..|++-+..|.++-+.. ..+.    .
T Consensus       192 ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~  271 (546)
T KOG0977|consen  192 LDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIES  271 (546)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence                             455677777    78888888888777 4444432 12333333333322111 1111    1


Q ss_pred             hHHHHHHHHHH-----------HHHHHHHH-------HHHhHHHHHHhhHhHHhhhhhhhhhhc---chhhhHHHHHHHH
Q 045262          296 DTQSRLQRLKV-----------LEAEAEDL-------RKSNMKLQLENSQLARRLESTQMLEIS---VLEDGEREALNEM  354 (594)
Q Consensus       296 E~ekKlq~lke-----------LE~Ev~EL-------Rr~NkeLQ~EKreL~~KL~sAe~~~~~---~~E~~ev~~i~ee  354 (594)
                      -.+.|++.++.           .=-|+..+       |....+|+-.+.-|..+++.-+.+...   .-+ ...+.-..+
T Consensus       272 ~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e-~~L~~kd~~  350 (546)
T KOG0977|consen  272 WYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFE-QALNDKDAE  350 (546)
T ss_pred             HHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhh-hhhhhHHHH
Confidence            22344444442           11344444       444445555555555554444433311   001 112233466


Q ss_pred             HHHHHHhhHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHHHhhcC
Q 045262          355 SQRLREENTSLSKEVEKLHADKCAGVEELVYLKWINACLRYELRNYQ  401 (594)
Q Consensus       355 ~~~LR~~NedL~kQVEqLq~dRfseVEELVYLRWVNACLR~ELrn~q  401 (594)
                      +..||+....|+.|++.|=.              ++.-|+-|+-.|.
T Consensus       351 i~~mReec~~l~~Elq~LlD--------------~ki~Ld~EI~~YR  383 (546)
T KOG0977|consen  351 IAKMREECQQLSVELQKLLD--------------TKISLDAEIAAYR  383 (546)
T ss_pred             HHHHHHHHHHHHHHHHHhhc--------------hHhHHHhHHHHHH
Confidence            78888989999998888855              4566888887663

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.27  E-value=0.12  Score=61.14  Aligned_cols=104  Identities=24%  Similarity=0.355  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHH-----------HHHhHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHH---HH
Q 045262          227 LQADNRRLEAQVA-----------DHAKTVSELEAAKTKIKLLKK---KLRTEAEQNREQILAVQERVTKLQEQA---HK  289 (594)
Q Consensus       227 LE~En~RLq~qv~-----------e~~~v~~ELE~ar~kir~Lqk---Kl~~~a~q~K~qi~~Lkq~v~~Lq~~E---~e  289 (594)
                      ||.+|.||.+-+.           ++.++.+|+|.-+++|.+|.+   ++++...++..+|+-||+||..-=.-|   +.
T Consensus       373 lEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~q  452 (1243)
T KOG0971|consen  373 LEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQ  452 (1243)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Confidence            4444888876554           456788999999999999985   455666677889999999997543333   33


Q ss_pred             hhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHH
Q 045262          290 AAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLAR  330 (594)
Q Consensus       290 ~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~  330 (594)
                      ......++|.|.+-+.+==.++++|+..|.+|++-+++|..
T Consensus       453 LtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~  493 (1243)
T KOG0971|consen  453 LTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELEL  493 (1243)
T ss_pred             HHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888887444443334556677778888888877643

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=97.26  E-value=0.065  Score=61.71  Aligned_cols=141  Identities=21%  Similarity=0.232  Sum_probs=96.0

Q ss_pred             hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 045262          199 QETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQE  278 (594)
Q Consensus       199 QEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq  278 (594)
                      |.++|..|....+....=+.+++..|..|++|.++|..-+..--.+.+.+..+=.|......+.+......+..+..|..
T Consensus       472 qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~  551 (961)
T KOG4673|consen  472 QSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEA  551 (961)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            44556666554433333377888899999999999998888877777777666666666666666677777777888888


Q ss_pred             HHHHHHHHHHHhhcCChhHHHHH------HHHHHHHHHHHHHHHHh-----------HHHHHHhhHhHHhhhhhhhhhh
Q 045262          279 RVTKLQEQAHKAAAIDPDTQSRL------QRLKVLEAEAEDLRKSN-----------MKLQLENSQLARRLESTQMLEI  340 (594)
Q Consensus       279 ~v~~Lq~~E~e~~~~d~E~ekKl------q~lkeLE~Ev~ELRr~N-----------keLQ~EKreL~~KL~sAe~~~~  340 (594)
                      +...+|+.--. +..|--.+.++      ++-..|-..|.+||.+.           ..+-+|+++|-.||++||-+..
T Consensus       552 ~~~a~qat~d~-a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~e  629 (961)
T KOG4673|consen  552 QALAEQATNDE-ARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCE  629 (961)
T ss_pred             HHHHHHHhhhh-hhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888875322 22222122222      23345667788888654           4577899999999999998663

>TIGR00606 rad50 rad50

Probab=97.22  E-value=0.11  Score=63.53  Aligned_cols=65  Identities=11%  Similarity=0.004  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262          173 KNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADH  241 (594)
Q Consensus       173 R~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~  241 (594)
                      ..-+..|+.+=..|+.++..|-.    ...+.+|+.++.....+++.+..++..++.+..+++.++..+
T Consensus       798 ~~ei~~l~~qie~l~~~l~~~~~----~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L  862 (1311)
T TIGR00606       798 QMELKDVERKIAQQAAKLQGSDL----DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL  862 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHhccccc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444555554433    124566777777777777777666666666666655555554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.21  E-value=0.1  Score=60.38  Aligned_cols=29  Identities=24%  Similarity=0.365  Sum_probs=24.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045262          165 CEQEVKNLKNMVQMLQDREKNLEVELLEY  193 (594)
Q Consensus       165 ~e~EI~~LR~lVeeLqERE~~LE~ELLEy  193 (594)
                      ++.||..||.-++..+..|..|+.++--|
T Consensus       423 LE~dvkkLraeLq~~Rq~E~ELRsqis~l  451 (697)
T PF09726_consen  423 LEADVKKLRAELQSSRQSEQELRSQISSL  451 (697)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Confidence            46789999999999999999998887643

; GO: 0016021 integral to membrane

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=97.09  E-value=0.2  Score=63.53  Aligned_cols=162  Identities=22%  Similarity=0.330  Sum_probs=68.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045262          165 CEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKT  244 (594)
Q Consensus       165 ~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v  244 (594)
                      .+.++..+...+++.+++...|+.+.-+      .+..|.+|+..+......+..+.++...++.++..|+.++..+...
T Consensus       906 le~~l~~~~~~~e~~ee~~~~le~~~~~------~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~  979 (1930)
T KOG0161|consen  906 LEKELKELKERLEEEEEKNAELERKKRK------LEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDEN  979 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556777777777777777777666543      2233444444444333333333333333333333333333333222


Q ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 045262          245 VSELEAAK----TKIKLLKKKLRTEAEQN---REQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKS  317 (594)
Q Consensus       245 ~~ELE~ar----~kir~LqkKl~~~a~q~---K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~  317 (594)
                      ...|-..|    .+++.|+-.++..-+++   ......|.+++..++..-+..-....++++.   .++||.+...++..
T Consensus       980 ~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~---~rkle~el~~~~e~ 1056 (1930)
T KOG0161|consen  980 ISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKA---KRKLEGELKDLQES 1056 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhH
Confidence            22222222    23334443333333222   2223334444444444322222223333322   33444444444444


Q ss_pred             hHHHHHHhhHhHHhhhhh
Q 045262          318 NMKLQLENSQLARRLEST  335 (594)
Q Consensus       318 NkeLQ~EKreL~~KL~sA  335 (594)
                      ...+..++.+|...|.-.
T Consensus      1057 ~~~~~~~~~el~~~l~kk 1074 (1930)
T KOG0161|consen 1057 IEELKKQKEELDNQLKKK 1074 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            444444444444444333

>PRK02224 chromosome segregation protein; Provisional

Probab=97.07  E-value=0.33  Score=56.33  Aligned_cols=20  Identities=30%  Similarity=0.263  Sum_probs=7.1

Q ss_pred             HHHHHHHHHhHHHHHHhhHh
Q 045262          309 AEAEDLRKSNMKLQLENSQL  328 (594)
Q Consensus       309 ~Ev~ELRr~NkeLQ~EKreL  328 (594)
                      .++.+|+.....|+..+.++
T Consensus       606 ~~~~~~~~~~~~l~~~~~~~  625 (880)
T PRK02224        606 DEIERLREKREALAELNDER  625 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=97.01  E-value=0.21  Score=58.68  Aligned_cols=168  Identities=29%  Similarity=0.353  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHH
Q 045262          202 IVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNRE---QILAVQE  278 (594)
Q Consensus       202 ~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~---qi~~Lkq  278 (594)
                      .|-.|..+|..++..+......|..+++|..++..++.+   +...++....||+.||++|...-.+.+.   ++..++.
T Consensus       344 dve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~---l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~  420 (775)
T PF10174_consen  344 DVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIED---LRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKE  420 (775)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            477888889999999999999999999999999887766   5677788888888888887666655543   3555555


Q ss_pred             HHHH-------------HHH----HH-----HHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhh
Q 045262          279 RVTK-------------LQE----QA-----HKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQ  336 (594)
Q Consensus       279 ~v~~-------------Lq~----~E-----~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe  336 (594)
                      ++..             |+.    ++     .......++ ..+...+..+..++.+++..+..||-+..+....|..+.
T Consensus       421 Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e-~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~k  499 (775)
T PF10174_consen  421 RLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAE-KERQEELETYQKELKELKAKLESLQKELSEKELQLEDAK  499 (775)
T ss_pred             HHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence            5551             111    10     000000111 234556677788899999999999999999888888887


Q ss_pred             hhhhcch-----hhhHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 045262          337 MLEISVL-----EDGEREALNEMSQRLREENTSLSKEVEKLH  373 (594)
Q Consensus       337 ~~~~~~~-----E~~ev~~i~ee~~~LR~~NedL~kQVEqLq  373 (594)
                      ..++.+.     .+..+..+.=+....|....+|.+|++.++
T Consensus       500 ee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~  541 (775)
T PF10174_consen  500 EEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLR  541 (775)
T ss_pred             hHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            6554332     223344555556677888888999988865

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.00  E-value=0.51  Score=53.54  Aligned_cols=9  Identities=56%  Similarity=0.759  Sum_probs=6.4

Q ss_pred             HHHHHHHhh
Q 045262          424 AKQLILEYA  432 (594)
Q Consensus       424 AKqLmLeYa  432 (594)
                      =||-+++|.
T Consensus       439 EkQeL~~yi  447 (546)
T PF07888_consen  439 EKQELLEYI  447 (546)
T ss_pred             HHHHHHHHH
Confidence            467778886

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=96.96  E-value=0.34  Score=61.59  Aligned_cols=171  Identities=21%  Similarity=0.221  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHH
Q 045262          219 LLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQ  298 (594)
Q Consensus       219 ~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~e  298 (594)
                      ....++.+|-.-+.+|..++.+.....++=...|..+.-.++|+..+..-.++++..++.++..|+..   ..+...|+.
T Consensus      1003 ~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~---l~kke~El~ 1079 (1930)
T KOG0161|consen 1003 AEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQ---LKKKESELS 1079 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence            33333333333344444444444444444444555555555666666666666677677777777654   234445666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhcc
Q 045262          299 SRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHADKCA  378 (594)
Q Consensus       299 kKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~dRfs  378 (594)
                      .-..++.++...+..|.+..++||-++.+|.-.|++-...-+         ++.....-|.++.++|..+++.. .+.-.
T Consensus      1080 ~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~---------K~ek~r~dL~~ele~l~~~Lee~-~~~t~ 1149 (1930)
T KOG0161|consen 1080 QLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRA---------KAERQRRDLSEELEELKEELEEQ-GGTTA 1149 (1930)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH-hhhHH
Confidence            666667777777777777777777777777666665544332         22222333444455555544433 22222


Q ss_pred             hhhHHHHHHH-----HHHHHHHHHhhcCC
Q 045262          379 GVEELVYLKW-----INACLRYELRNYQP  402 (594)
Q Consensus       379 eVEELVYLRW-----VNACLR~ELrn~q~  402 (594)
                      -..|+=-.||     +++=|+.|-.++.+
T Consensus      1150 ~q~e~~~k~e~e~~~l~~~leee~~~~e~ 1178 (1930)
T KOG0161|consen 1150 AQLELNKKREAEVQKLRRDLEEETLDHEA 1178 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            2233333333     35666666666554

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.91  E-value=0.037  Score=58.49  Aligned_cols=101  Identities=23%  Similarity=0.333  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHH-HHHHHHH--------HhhhhhhHHHHHHHHHHHHHHHHHHH
Q 045262          166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIV-MELQNRL--------KLNNMEGRLLNLKIESLQADNRRLEA  236 (594)
Q Consensus       166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v-~ELe~~L--------~~k~~Ei~~L~~kI~sLE~En~RLq~  236 (594)
                      ++++..-+..|..|+ -|..+..+||..|.--..++.- ..-...+        .-+-..++.|..|+..||.||..|+.
T Consensus       103 e~~L~~~~e~v~qLr-HeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~  181 (306)
T PF04849_consen  103 EEQLGAALEQVEQLR-HELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRS  181 (306)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555554 3666666676666532211110 0000000        01224579999999999999999998


Q ss_pred             HHHHHHhH---------------HHHHHHHHHHHHHHHHHHHHHHH
Q 045262          237 QVADHAKT---------------VSELEAAKTKIKLLKKKLRTEAE  267 (594)
Q Consensus       237 qv~e~~~v---------------~~ELE~ar~kir~LqkKl~~~a~  267 (594)
                      ++..+..-               +++|..|..+|..|..-|-+..+
T Consensus       182 Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~E  227 (306)
T PF04849_consen  182 EASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTE  227 (306)
T ss_pred             HHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH
Confidence            88877633               34555555555555544444433

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=96.83  E-value=0.71  Score=47.21  Aligned_cols=207  Identities=21%  Similarity=0.295  Sum_probs=97.1

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------hhhHHHHHHHH-------HHHHhhhhhhHHHHHHHHH
Q 045262          162 KDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGL--------KEQETIVMELQ-------NRLKLNNMEGRLLNLKIES  226 (594)
Q Consensus       162 ~~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~L--------KEQEa~v~ELe-------~~L~~k~~Ei~~L~~kI~s  226 (594)
                      ...++.||..||..|..+..--.+|+.++--+..-        .+.-+....|+       ..|...+.....|..+|..
T Consensus        49 ~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~  128 (312)
T PF00038_consen   49 KEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQS  128 (312)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHH
Confidence            34468899999999998887777777766544432        11222233333       3333333333344444444


Q ss_pred             HHHHHHHHHHHHHH-HHhHHHHH------H-------HHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHH----
Q 045262          227 LQADNRRLEAQVAD-HAKTVSEL------E-------AAKTKIKLLKKKLRTEAEQNREQILA-VQERVTKLQEQA----  287 (594)
Q Consensus       227 LE~En~RLq~qv~e-~~~v~~EL------E-------~ar~kir~LqkKl~~~a~q~K~qi~~-Lkq~v~~Lq~~E----  287 (594)
                      |+.|..-+...-.+ ...+..++      +       ..-..++.++.+....+.+++.++.. .+.++..++..-    
T Consensus       129 L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~  208 (312)
T PF00038_consen  129 LKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSS  208 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccc
Confidence            44443333211110 11111111      0       01233455555555566666554321 122333332210    


Q ss_pred             HHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHH
Q 045262          288 HKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSK  367 (594)
Q Consensus       288 ~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~k  367 (594)
                      ........|+-.-...+..|..++..|+..|..|+....+|-.++........     ..+..+..++..+|........
T Consensus       209 ~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~-----~~i~~le~el~~l~~~~~~~~~  283 (312)
T PF00038_consen  209 EELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQ-----AEIAELEEELAELREEMARQLR  283 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHH-----HhhhccchhHHHHHHHHHHHHH
Confidence            00111122333333445667777777777777777777666655554433322     2233344455555555555555


Q ss_pred             HHHHHh
Q 045262          368 EVEKLH  373 (594)
Q Consensus       368 QVEqLq  373 (594)
                      +++.|-
T Consensus       284 ey~~Ll  289 (312)
T PF00038_consen  284 EYQELL  289 (312)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            554443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=96.82  E-value=0.6  Score=56.30  Aligned_cols=17  Identities=29%  Similarity=0.517  Sum_probs=6.7

Q ss_pred             HHHHHhhHHHHHHHHHH
Q 045262          356 QRLREENTSLSKEVEKL  372 (594)
Q Consensus       356 ~~LR~~NedL~kQVEqL  372 (594)
                      ..||+.-+.-+.++..|
T Consensus       446 ~~l~k~i~~~~~~l~~l  462 (1074)
T KOG0250|consen  446 LQLRKKIENISEELKDL  462 (1074)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33444434444333333

>PRK01156 chromosome segregation protein; Provisional

Probab=96.77  E-value=1.7  Score=50.91  Aligned_cols=14  Identities=7%  Similarity=0.344  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHHH
Q 045262          167 QEVKNLKNMVQMLQ  180 (594)
Q Consensus       167 ~EI~~LR~lVeeLq  180 (594)
                      .+|..|.+-++.+.
T Consensus       483 ~~i~~l~~~~~~l~  496 (895)
T PRK01156        483 EKIREIEIEVKDID  496 (895)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44444444443333

>PLN03188 kinesin-12 family protein; Provisional

Probab=96.76  E-value=0.37  Score=58.94  Aligned_cols=75  Identities=20%  Similarity=0.220  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHH-HHHHHHHHHHHhhHHHHHHHHHHhhhhcchhhH
Q 045262          308 EAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGERE-ALNEMSQRLREENTSLSKEVEKLHADKCAGVEE  382 (594)
Q Consensus       308 E~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~-~i~ee~~~LR~~NedL~kQVEqLq~dRfseVEE  382 (594)
                      |-|..=||.-|+.||-|.|+-+.-..+|=-....+-|.++++ -+++.+...-++|+++-||+|.|+..+-.++.=
T Consensus      1172 eker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t 1247 (1320)
T PLN03188       1172 EKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEIST 1247 (1320)
T ss_pred             HHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777888899999998864433333322222223433432 234557778899999999999999998666543

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=96.69  E-value=0.35  Score=53.48  Aligned_cols=184  Identities=25%  Similarity=0.284  Sum_probs=100.4

Q ss_pred             chHHHHHHHHHHHHHHHH-------HHHHHHHHHH----Hhhhchhh----HHH-----------HHHHHHHHH-hhhhh
Q 045262          164 DCEQEVKNLKNMVQMLQD-------REKNLEVELL----EYYGLKEQ----ETI-----------VMELQNRLK-LNNME  216 (594)
Q Consensus       164 d~e~EI~~LR~lVeeLqE-------RE~~LE~ELL----Eyy~LKEQ----Ea~-----------v~ELe~~L~-~k~~E  216 (594)
                      |++.-|.-|.+-|.+|..       |-.+|..|-+    .|.-|.||    |..           ..|+.-.++ .+..+
T Consensus       219 di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle  298 (502)
T KOG0982|consen  219 DIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLE  298 (502)
T ss_pred             hHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344456777777877766       4444444432    34444433    322           222222222 46678


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 045262          217 GRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAK----TKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAA  292 (594)
Q Consensus       217 i~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar----~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~  292 (594)
                      ++.|.+++-.|+.||.+|+..++.......+|+.-+    -.+..|.-++.-+.+--+..-..|.+    +|.+      
T Consensus       299 ~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrr----fq~e------  368 (502)
T KOG0982|consen  299 KENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRR----FQEE------  368 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHh------
Confidence            899999999999999999988887777666664322    22333333333322222222222222    2211      


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 045262          293 IDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKL  372 (594)
Q Consensus       293 ~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqL  372 (594)
                              -....   -=++|||+....||..|..++.-     -..   ..+.-+-.+..++..||+.|-.|..|=|.|
T Consensus       369 --------keatq---ELieelrkelehlr~~kl~~a~p-----~rg---rsSaRe~eleqevkrLrq~nr~l~eqneel  429 (502)
T KOG0982|consen  369 --------KEATQ---ELIEELRKELEHLRRRKLVLANP-----VRG---RSSAREIELEQEVKRLRQPNRILSEQNEEL  429 (502)
T ss_pred             --------hHHHH---HHHHHHHHHHHHHHHHHHHhhcc-----ccC---chhHHHHHHHHHHHHhccccchhhhhhhhh
Confidence                    11122   23678888888888887665311     000   112222235566777777777777777777


Q ss_pred             hhhh
Q 045262          373 HADK  376 (594)
Q Consensus       373 q~dR  376 (594)
                      ++-=
T Consensus       430 ngti  433 (502)
T KOG0982|consen  430 NGTI  433 (502)
T ss_pred             hhhh
Confidence            6543

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=96.66  E-value=0.11  Score=61.73  Aligned_cols=167  Identities=22%  Similarity=0.243  Sum_probs=105.0

Q ss_pred             CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 045262          150 DVENPRPCRGSEKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQA  229 (594)
Q Consensus       150 ~~~~~~a~~~~e~~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~  229 (594)
                      -|.+|....+.+..+...||..|       +.+=.+|+.||-|-.      ..+..|+++|....+|++.|+..+..+..
T Consensus       160 ~~~sp~~~~~~~~~hL~velAdl-------e~kir~LrqElEEK~------enll~lr~eLddleae~~klrqe~~e~l~  226 (1195)
T KOG4643|consen  160 LYKSPYDIVVKKNLHLEVELADL-------EKKIRTLRQELEEKF------ENLLRLRNELDDLEAEISKLRQEIEEFLD  226 (1195)
T ss_pred             CCCCcchhhcchhHHHHHHHHHH-------HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455444444444455555555       455556667766655      34889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHhhcCChhHHH
Q 045262          230 DNRRLEAQVADHAKTVSELEAAKTKIKL-------LKKKLRTEAEQN---REQILAVQERVTKLQEQAHKAAAIDPDTQS  299 (594)
Q Consensus       230 En~RLq~qv~e~~~v~~ELE~ar~kir~-------LqkKl~~~a~q~---K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ek  299 (594)
                      +..|...-..+..+++..-|+|-.+-++       ++-++...-+.+   -+.-.||+.|+-++.++-+- +....+|=+
T Consensus       227 ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~-~tleseiiq  305 (1195)
T KOG4643|consen  227 EAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-ATLESEIIQ  305 (1195)
T ss_pred             HHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc-CChHHHHHH
Confidence            9999998888888888876665322211       222332222222   12345667777776665322 333344444


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHhhHhHH
Q 045262          300 RLQRLKVLEAEAEDLRKSNMKLQLENSQLAR  330 (594)
Q Consensus       300 Klq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~  330 (594)
                      =-|.+.+|+.+--=.|....+|+.||..|-+
T Consensus       306 lkqkl~dm~~erdtdr~kteeL~eEnstLq~  336 (1195)
T KOG4643|consen  306 LKQKLDDMRSERDTDRHKTEELHEENSTLQV  336 (1195)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            4466777777766666666777777666533

>TIGR00606 rad50 rad50

Probab=96.58  E-value=0.8  Score=56.28  Aligned_cols=39  Identities=15%  Similarity=0.093  Sum_probs=18.9

Q ss_pred             hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 045262          199 QETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQ  237 (594)
Q Consensus       199 QEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~q  237 (594)
                      +......|+.+|.....++..+...|..++.+...|...
T Consensus       879 ~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~  917 (1311)
T TIGR00606       879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETF  917 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            333445555555555555555555554444444444333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=96.57  E-value=0.99  Score=51.31  Aligned_cols=129  Identities=21%  Similarity=0.301  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 045262          201 TIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERV  280 (594)
Q Consensus       201 a~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v  280 (594)
                      ..+..|+..|.....+.+.|..+...+...++.|..+   ...+..+++.++.+|+.|.-.+.....+.+++-..+. ++
T Consensus       171 ~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E---~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~-~l  246 (546)
T PF07888_consen  171 EEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEE---RESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELD-KL  246 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence            3455666666666666666666666666655555433   3345556666777777777666655555533221111 11


Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhh
Q 045262          281 TKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLE  339 (594)
Q Consensus       281 ~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~  339 (594)
                      ..++..-+   ....++.   +++++.-.++....+.+..++.++..|...|..++.++
T Consensus       247 k~~~~elE---q~~~eLk---~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~l  299 (546)
T PF07888_consen  247 KELKAELE---QLEAELK---QRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQL  299 (546)
T ss_pred             HHHHHHHH---HHHHHHH---HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            11211100   0001122   34555555555555556667777766666666665544

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.57  E-value=0.62  Score=47.98  Aligned_cols=111  Identities=29%  Similarity=0.370  Sum_probs=64.2

Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 045262          205 ELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQ  284 (594)
Q Consensus       205 ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq  284 (594)
                      ....-|....+++..++..+..++.+...|+.|+..+   ..+|..++.+++.++.++  .+-.+-.++..|...+..++
T Consensus        28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~---e~ei~~~r~r~~~~e~kl--~~v~~~~e~~aL~~E~~~ak  102 (239)
T COG1579          28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQL---ESEIQEIRERIKRAEEKL--SAVKDERELRALNIEIQIAK  102 (239)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHH
Confidence            3344455555666667777777777766666666544   356666777777777777  44444556666666666666


Q ss_pred             HHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhh
Q 045262          285 EQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQM  337 (594)
Q Consensus       285 ~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~  337 (594)
                      .+                 ...||.++.+|......|+.+.-.|..++...+.
T Consensus       103 ~r-----------------~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~  138 (239)
T COG1579         103 ER-----------------INSLEDELAELMEEIEKLEKEIEDLKERLERLEK  138 (239)
T ss_pred             HH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44                 3444555555554444555444444444444443

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=96.51  E-value=0.22  Score=56.30  Aligned_cols=164  Identities=23%  Similarity=0.205  Sum_probs=102.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH------------HHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHH
Q 045262          214 NMEGRLLNLKIESLQADNRRLEAQVADHAKTVS------------ELEAAKTKIKLLK---KKLRTEAEQNREQILAVQE  278 (594)
Q Consensus       214 ~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~------------ELE~ar~kir~Lq---kKl~~~a~q~K~qi~~Lkq  278 (594)
                      |..+..+-.+|-.||+||.+|+.++.....+..            ||..||.-+++-.   .+++.+..+.+.++.-++.
T Consensus        48 NDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~  127 (546)
T KOG0977|consen   48 NDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRK  127 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            344555666788889999999888876655442            6666666666653   4566667777777777777


Q ss_pred             HHHHHHHHHHHhhcCChhHHHH--HHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhc---chhhhHHHHHHH
Q 045262          279 RVTKLQEQAHKAAAIDPDTQSR--LQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEIS---VLEDGEREALNE  353 (594)
Q Consensus       279 ~v~~Lq~~E~e~~~~d~E~ekK--lq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~---~~E~~ev~~i~e  353 (594)
                      ++.+.+..     ..-+..+.+  +.++.++|.|+.=+++..+.|..++..|..-..--...+..   .+++..+-.   
T Consensus       128 ~~~~~~k~-----~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr---  199 (546)
T KOG0977|consen  128 KLEKAEKE-----RRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLR---  199 (546)
T ss_pred             HHHHHHHH-----HhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH---
Confidence            77765432     111222333  56789999999999999999999988884432222221110   111111111   


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhhhcchhhHHHHHH
Q 045262          354 MSQRLREENTSLSKEVEKLHADKCAGVEELVYLK  387 (594)
Q Consensus       354 e~~~LR~~NedL~kQVEqLq~dRfseVEELVYLR  387 (594)
                        ..+-....+|..+|+-++..+-.+++|+.-..
T Consensus       200 --~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~  231 (546)
T KOG0977|consen  200 --VDLQNRVQTLLEELAFLKRIHKQEIEEERRKA  231 (546)
T ss_pred             --HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence              11223456788888888888888877765443

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=96.44  E-value=0.53  Score=56.73  Aligned_cols=156  Identities=19%  Similarity=0.219  Sum_probs=77.8

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-chhhHH-------HHHHHHHHHHhhhhhhHHHHHH-------HH
Q 045262          161 EKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYG-LKEQET-------IVMELQNRLKLNNMEGRLLNLK-------IE  225 (594)
Q Consensus       161 e~~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~-LKEQEa-------~v~ELe~~L~~k~~Ei~~L~~k-------I~  225 (594)
                      .....+.+|..|...+..|+.....|+.++.++.. |++=+.       .+..+++++..+..|+..|.-.       |.
T Consensus       655 ~~~s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~  734 (1074)
T KOG0250|consen  655 DEFSFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDIS  734 (1074)
T ss_pred             cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchh
Confidence            44455667777777776666655555555555532 233333       3445555666666666666553       22


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHH-------
Q 045262          226 SLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQ-------  298 (594)
Q Consensus       226 sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~e-------  298 (594)
                      .++.+.........++..-...++.++.++..++.+.+..-+.-.+.-..|++...+|++.+.+....+..+.       
T Consensus       735 ~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s~e~~~~  814 (1074)
T KOG0250|consen  735 KLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLRSAEDEKR  814 (1074)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhh
Confidence            2222222222222333333333344444444444444444444444556666677777665544433332222       


Q ss_pred             -----H--HHHHHHHHHHHHHHHHH
Q 045262          299 -----S--RLQRLKVLEAEAEDLRK  316 (594)
Q Consensus       299 -----k--Klq~lkeLE~Ev~ELRr  316 (594)
                           .  .++.++..|++++.+..
T Consensus       815 HyE~~~K~~l~~l~~~E~~~~~~e~  839 (1074)
T KOG0250|consen  815 HYEDKLKSRLEELKQKEVEKVNLEE  839 (1074)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHhhhc
Confidence                 2  35566666666655544

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.41  E-value=0.52  Score=48.51  Aligned_cols=153  Identities=20%  Similarity=0.289  Sum_probs=74.1

Q ss_pred             hhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHHhHHH
Q 045262          198 EQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLK-----KKLRTEAEQNREQ  272 (594)
Q Consensus       198 EQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~Lq-----kKl~~~a~q~K~q  272 (594)
                      ++...+..+++++...+..+.-+..+++.|+-+..+++..+.+..   +.+..++.++....     +.+..+...++.+
T Consensus        28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r---~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r  104 (239)
T COG1579          28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIR---ERIKRAEEKLSAVKDERELRALNIEIQIAKER  104 (239)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence            555556666666666666666666666666666666665544332   33333333332211     3333334444444


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHH
Q 045262          273 ILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALN  352 (594)
Q Consensus       273 i~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~  352 (594)
                      +..|..++..+..                 .+.+|+.++..++.....++..-.++-.+++.+-..+.-.    .-....
T Consensus       105 ~~~le~el~~l~~-----------------~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~----~~~~~~  163 (239)
T COG1579         105 INSLEDELAELME-----------------EIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREE----GQELSS  163 (239)
T ss_pred             HHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence            4444444444332                 2455666666666666666655555544444443333210    001111


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhh
Q 045262          353 EMSQRLREENTSLSKEVEKLHA  374 (594)
Q Consensus       353 ee~~~LR~~NedL~kQVEqLq~  374 (594)
                      +....-.+.+.+|...+|.+++
T Consensus       164 ~~~~L~~~l~~ell~~yeri~~  185 (239)
T COG1579         164 KREELKEKLDPELLSEYERIRK  185 (239)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHh
Confidence            2223333456666666666654

>PRK09039 hypothetical protein; Validated

Probab=96.35  E-value=0.24  Score=52.80  Aligned_cols=100  Identities=24%  Similarity=0.288  Sum_probs=46.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 045262          216 EGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLR---TEAEQNREQILAVQERVTKLQEQAHKAAA  292 (594)
Q Consensus       216 Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~---~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~  292 (594)
                      +|..++..+..+++++.+|+.+.+....   ....+..+...|++++.   .....+..++..|+++++.|+.+      
T Consensus        82 ~l~~l~~~l~~a~~~r~~Le~~~~~~~~---~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q------  152 (343)
T PRK09039         82 SVANLRASLSAAEAERSRLQALLAELAG---AGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQ------  152 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhh---hcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH------
Confidence            4444444445555555555554442211   11122233333333333   22233344555566666665544      


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhh
Q 045262          293 IDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLEST  335 (594)
Q Consensus       293 ~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sA  335 (594)
                                 +..|+.++.+.....++.|.+..+|-.+|+.|
T Consensus       153 -----------la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a  184 (343)
T PRK09039        153 -----------LAALEAALDASEKRDRESQAKIADLGRRLNVA  184 (343)
T ss_pred             -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       44455555555555555555555554444443

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.34  E-value=0.34  Score=45.91  Aligned_cols=118  Identities=18%  Similarity=0.263  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 045262          201 TIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERV  280 (594)
Q Consensus       201 a~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v  280 (594)
                      +.+..|+.+...+..+|.-|..++..||.+...++.++.+......+-+-....+.-|+++|+..           .+++
T Consensus        21 ~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~L-----------Eeel   89 (143)
T PF12718_consen   21 AKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLL-----------EEEL   89 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHH-----------HHHH
Confidence            44667777777888899999999999999999999998888888887776666666666655533           3332


Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhh
Q 045262          281 TKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLE  339 (594)
Q Consensus       281 ~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~  339 (594)
                      ......          +..-...+++.++.+.++-|..+.|+.+...+-.|++..+.++
T Consensus        90 e~ae~~----------L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~  138 (143)
T PF12718_consen   90 EEAEKK----------LKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKY  138 (143)
T ss_pred             HHHHHH----------HHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            222221          2222344677778888888888888888777766666555443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK01156 chromosome segregation protein; Provisional

Probab=96.23  E-value=3.7  Score=48.25  Aligned_cols=84  Identities=10%  Similarity=0.095  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 045262          166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTV  245 (594)
Q Consensus       166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~  245 (594)
                      ..+|..|..-+++|.++...|+.++-++-...+...  ..--++|..+..++..+..++..+..+...|+.....|..+.
T Consensus       475 ~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~~~l~--~~~~~~l~~~~~~~~~l~~~l~~~~~~l~~le~~~~~~~~l~  552 (895)
T PRK01156        475 NEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLE--SEEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIK  552 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777777777777777777766655322221100  011122333344444555555555555555555555555555


Q ss_pred             HHHHHH
Q 045262          246 SELEAA  251 (594)
Q Consensus       246 ~ELE~a  251 (594)
                      .++...
T Consensus       553 ~~~~~~  558 (895)
T PRK01156        553 NRYKSL  558 (895)
T ss_pred             HHHHHh
Confidence            555433

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=96.23  E-value=2.6  Score=46.74  Aligned_cols=79  Identities=27%  Similarity=0.326  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHhH
Q 045262          166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQV-ADHAKT  244 (594)
Q Consensus       166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv-~e~~~v  244 (594)
                      ..||..+...+..-+.+-..|+.+      ||+++..+..++.+|..-...++.++..|..++...+.|+.|- .+-..+
T Consensus        44 q~ei~~~~~~i~~~~~~~~kL~~~------lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L  117 (420)
T COG4942          44 QKEIAALEKKIREQQDQRAKLEKQ------LKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL  117 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            567888888888888888888876      5788999999999999999999999999999998888888666 333333


Q ss_pred             HHHHHH
Q 045262          245 VSELEA  250 (594)
Q Consensus       245 ~~ELE~  250 (594)
                      .+.|.+
T Consensus       118 a~~L~A  123 (420)
T COG4942         118 AEQLAA  123 (420)
T ss_pred             HHHHHH
Confidence            334433

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=96.19  E-value=0.0013  Score=75.22  Aligned_cols=229  Identities=22%  Similarity=0.257  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hchhhHHHHHHHHHHHHhhhhhh------HHHHHHHHHHHHHHHHHH
Q 045262          166 EQEVKNLKNMVQMLQDREKNLEVELLEYY----GLKEQETIVMELQNRLKLNNMEG------RLLNLKIESLQADNRRLE  235 (594)
Q Consensus       166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy----~LKEQEa~v~ELe~~L~~k~~Ei------~~L~~kI~sLE~En~RLq  235 (594)
                      ..++..|+..+..++.+-...+.++-++.    .+.+.+..+.+|+.+|..-....      ......|..||.+|.+|.
T Consensus       191 ~~e~~~l~~~le~~~~~~~e~e~~~~~L~~~q~~~~e~e~~i~~Le~el~~~~~~~~i~k~l~~ql~~i~~LE~en~~l~  270 (722)
T PF05557_consen  191 ESELEELKEQLEELQSELQEAEQQLQELQASQASLAEAEQKIKELEAELKDQESDAEINKELKEQLAHIRELEKENRRLR  270 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555544433333333331    23344666666666555332221      222345788999999999


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHH
Q 045262          236 AQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLR  315 (594)
Q Consensus       236 ~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELR  315 (594)
                      +++..+..+.+-.+.++.+++-|++|++.. +...+++..++=++..|+.+-..-..-....--....-.+|-..+..||
T Consensus       271 ~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~-E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq  349 (722)
T PF05557_consen  271 EELKHLRQSQENVELLEEEKRSLQRKLERL-EELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQ  349 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999998754 4445555555555555544311100000000001111122333334444


Q ss_pred             HHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHH
Q 045262          316 KSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHADKCAGVEELVYLKWINACLRY  395 (594)
Q Consensus       316 r~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~dRfseVEELVYLRWVNACLR~  395 (594)
                      ..+.-|..+++.+...+...+..+..+ + .+...+..++..++.....+.+.+..|+.-+.--++|.=|||=+=.+.--
T Consensus       350 ~~~~~L~ek~g~~~~~~~~l~~~~~~L-e-~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~  427 (722)
T PF05557_consen  350 QENASLTEKLGSLQSELRELEEEIQEL-E-QEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDK  427 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            444444444433332222222211111 1 12233445566666666677777888888888888888888866555444


Q ss_pred             HH
Q 045262          396 EL  397 (594)
Q Consensus       396 EL  397 (594)
                      |.
T Consensus       428 e~  429 (722)
T PF05557_consen  428 EE  429 (722)
T ss_dssp             --
T ss_pred             hh
Confidence            44

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.15  E-value=3.1  Score=46.63  Aligned_cols=158  Identities=18%  Similarity=0.175  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH-------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262          201 TIVMELQNRLKLNNMEGRLLNLKIESLQADNRRL-------------EAQVADHAKTVSELEAAKTKIKLLKKKLRTEAE  267 (594)
Q Consensus       201 a~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RL-------------q~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~  267 (594)
                      ..|.+||..|.+.+.||..-..--..|.++.++|             .+-+.-..+...++-..-..-++||+++....+
T Consensus       345 ~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se  424 (521)
T KOG1937|consen  345 RRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESE  424 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5588999999999999985555555555554443             344445555566666677778889999999888


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHH---HHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchh
Q 045262          268 QNREQILAVQERVTKLQEQAHKAAAIDPDTQSR---LQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLE  344 (594)
Q Consensus       268 q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekK---lq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E  344 (594)
                      +.-+......+.|-+       .++.|+..-.-   +.++..-=.++.|+=+.+-.+-.|-++|-.++..-+.+..-   
T Consensus       425 ~L~Rsfavtdellf~-------sakhddhvR~aykllt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E~~k~~l---  494 (521)
T KOG1937|consen  425 ALNRSFAVTDELLFM-------SAKHDDHVRLAYKLLTRIHLNCMEILEMIRETGALKREVRDLESQIYVEEQKQYL---  494 (521)
T ss_pred             HHhhhHHHHHHHHHH-------HhccCHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhHHHHHHHH---
Confidence            888888777766543       23444443322   33445555889999999999999999999998887766542   


Q ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHH
Q 045262          345 DGEREALNEMSQRLREENTSLSKEV  369 (594)
Q Consensus       345 ~~ev~~i~ee~~~LR~~NedL~kQV  369 (594)
                       .-.++|.+..+.+|+.|+.|.++|
T Consensus       495 -~slEkl~~Dyqairqen~~L~~~i  518 (521)
T KOG1937|consen  495 -KSLEKLHQDYQAIRQENDQLFSEI  518 (521)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHH
Confidence             223568888899999999998887

>PRK04863 mukB cell division protein MukB; Provisional

Probab=96.10  E-value=6.3  Score=49.79  Aligned_cols=169  Identities=12%  Similarity=0.136  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 045262          169 VKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSEL  248 (594)
Q Consensus       169 I~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~EL  248 (594)
                      +.++...+.+|..+...|+.+.-.+..-++....+..+...+......++.|...+...+.....++.   +...+..++
T Consensus       309 L~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeelee---eleeleeEl  385 (1486)
T PRK04863        309 LVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADE---QQEENEARA  385 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence            44555556666666666666555444333332222222233333333333333333333333222222   223333445


Q ss_pred             HHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 045262          249 EAAKTKIKLLKKKLR---TEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLEN  325 (594)
Q Consensus       249 E~ar~kir~LqkKl~---~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EK  325 (594)
                      +.+..++..|+.++.   ........++..+++.+..+..-+.=-...+...+.=...+..++..+.+++....+|+.+.
T Consensus       386 eelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL  465 (1486)
T PRK04863        386 EAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKL  465 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555443   34444455666666777666654321111122222222345667777777777777777776


Q ss_pred             hHhHHhhhhhhhhhh
Q 045262          326 SQLARRLESTQMLEI  340 (594)
Q Consensus       326 reL~~KL~sAe~~~~  340 (594)
                      ..+-..++.-+...+
T Consensus       466 ~~lea~leql~~~~~  480 (1486)
T PRK04863        466 SVAQAAHSQFEQAYQ  480 (1486)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            666666655554443

>PRK04863 mukB cell division protein MukB; Provisional

Probab=96.08  E-value=3.4  Score=52.09  Aligned_cols=183  Identities=17%  Similarity=0.214  Sum_probs=89.0

Q ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHH---HHHHHHHHHhHHHHHHHHHH
Q 045262          210 LKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKI-------KLLK---KKLRTEAEQNREQILAVQER  279 (594)
Q Consensus       210 L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~ki-------r~Lq---kKl~~~a~q~K~qi~~Lkq~  279 (594)
                      +.....++..+..++..++.+...++.++..+...+..++.|+.=|       ..|+   ..+.....+...++..++++
T Consensus       385 leelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~k  464 (1486)
T PRK04863        385 AEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQK  464 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444445555556666677777777777777665       2333   33334444444555555555


Q ss_pred             HHHHHHHHH-------H----hhcCC--------hhHHHHHHHHHHHHHHHHHHHHHhHHHHH---HhhHhHHhhhhhhh
Q 045262          280 VTKLQEQAH-------K----AAAID--------PDTQSRLQRLKVLEAEAEDLRKSNMKLQL---ENSQLARRLESTQM  337 (594)
Q Consensus       280 v~~Lq~~E~-------e----~~~~d--------~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~---EKreL~~KL~sAe~  337 (594)
                      ...++..-.       .    ..+.+        -++-......+-+-.-+.-||+...+|+.   +-+....-|..+..
T Consensus       465 L~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~  544 (1486)
T PRK04863        465 LSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCK  544 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555444210       0    00000        11112222223333444455555555555   33444444455544


Q ss_pred             hhhcchh-------------------hhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhcchhhHHHHHHHHHH--HHHHH
Q 045262          338 LEISVLE-------------------DGEREALNEMSQRLREENTSLSKEVEKLHADKCAGVEELVYLKWINA--CLRYE  396 (594)
Q Consensus       338 ~~~~~~E-------------------~~ev~~i~ee~~~LR~~NedL~kQVEqLq~dRfseVEELVYLRWVNA--CLR~E  396 (594)
                      .......                   +..++.+.+....+|+.-+.|..++.+|..         .|--|+.|  ||+. 
T Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~---------~ap~W~~a~~al~~-  614 (1486)
T PRK04863        545 RLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAA---------RAPAWLAAQDALAR-  614 (1486)
T ss_pred             HhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hChHHHhhHHHHHH-
Confidence            3221111                   122233444556666666667666666654         45559865  7877 


Q ss_pred             HhhcCC
Q 045262          397 LRNYQP  402 (594)
Q Consensus       397 Lrn~q~  402 (594)
                      |+.++.
T Consensus       615 L~eq~g  620 (1486)
T PRK04863        615 LREQSG  620 (1486)
T ss_pred             HHHhcc
Confidence            776654

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=96.04  E-value=0.028  Score=64.54  Aligned_cols=208  Identities=19%  Similarity=0.292  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045262          166 EQEVKNLKNMVQMLQDREKNLEVELLEYY-GLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKT  244 (594)
Q Consensus       166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy-~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v  244 (594)
                      ..+|..|...+..|+..-..+..++.+|. .++.+...+..||+++.+-.-|++.|+.-+.++..|.......-.. ..-
T Consensus       363 ~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~-~~~  441 (722)
T PF05557_consen  363 QSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQD-TQR  441 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhH-HHH
Confidence            44566666677777666555666655553 3455566778888888888889999988888888876555422100 000


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCC-----hhHHHHHHHHHHHHHHHHHHHHHhH
Q 045262          245 VSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAID-----PDTQSRLQRLKVLEAEAEDLRKSNM  319 (594)
Q Consensus       245 ~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d-----~E~ekKlq~lkeLE~Ev~ELRr~Nk  319 (594)
                      ..+++..-..+.....++.....+....+...++....+.. +....+..     ..+-.-...+..|..++.+|++.+.
T Consensus       442 ~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~~~~~~-e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~  520 (722)
T PF05557_consen  442 IKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRNETLEA-ELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENE  520 (722)
T ss_dssp             -----------------------------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhh-hhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            11111111111111111111112222222222222111111 11100000     0001112345668888888888888


Q ss_pred             HHHHHhhHhHHhhhhh----h---h--hhhcchhhhHH---HHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 045262          320 KLQLENSQLARRLEST----Q---M--LEISVLEDGER---EALNEMSQRLREENTSLSKEVEKLHAD  375 (594)
Q Consensus       320 eLQ~EKreL~~KL~sA----e---~--~~~~~~E~~ev---~~i~ee~~~LR~~NedL~kQVEqLq~d  375 (594)
                      .|+.++..|-.+|..-    .   .  ++-.+..+|..   ..-.+.+..||.+|++|..+|..|..+
T Consensus       521 ~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~~  588 (722)
T PF05557_consen  521 RLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLEEG  588 (722)
T ss_dssp             HHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            8888888888888751    1   1  11111233432   112567999999999999999777544

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=96.02  E-value=4.5  Score=47.42  Aligned_cols=208  Identities=23%  Similarity=0.243  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch---hhHHHHHHHHHHHH---hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 045262          166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLK---EQETIVMELQNRLK---LNNMEGRLLNLKIESLQADNRRLEAQVA  239 (594)
Q Consensus       166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LK---EQEa~v~ELe~~L~---~k~~Ei~~L~~kI~sLE~En~RLq~qv~  239 (594)
                      ..|++.|+..+..+.+.|..=-.+.-.=..++   +++...-+|+...+   .--+|+..-.-.++-+|++|.+|-.|+.
T Consensus       399 ~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~  478 (698)
T KOG0978|consen  399 RAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELR  478 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45777777777777666554333111111122   44444444544444   3346666667777889999999876654


Q ss_pred             ----HHHhHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHh----hcCChhHHHHHHHHHHHH
Q 045262          240 ----DHAKTVSELEAAKTKIKLLKKKLRTEAEQ---NREQILAVQERVTKLQEQAHKA----AAIDPDTQSRLQRLKVLE  308 (594)
Q Consensus       240 ----e~~~v~~ELE~ar~kir~LqkKl~~~a~q---~K~qi~~Lkq~v~~Lq~~E~e~----~~~d~E~ekKlq~lkeLE  308 (594)
                          .+.++..+...+..++++|.........+   .+.+..++...+..|+.++.--    ...-.++.+.-+.+..+=
T Consensus       479 ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~k  558 (698)
T KOG0978|consen  479 EKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLK  558 (698)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHH
Confidence                46778888899999999998776655443   3555666666666666554211    222355555556666666


Q ss_pred             HHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 045262          309 AEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHAD  375 (594)
Q Consensus       309 ~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~d  375 (594)
                      -.+.++.+....||.+......+|...+-..+..  ..++.....-..+|-++++.|-+.++.+++.
T Consensus       559 k~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~--~~ele~~~~k~~rleEE~e~L~~kle~~k~~  623 (698)
T KOG0978|consen  559 KKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAEL--ELELEIEKFKRKRLEEELERLKRKLERLKKE  623 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            6677777777777777777766666666554421  1223333444556666677777777777654

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=95.96  E-value=0.98  Score=41.80  Aligned_cols=85  Identities=22%  Similarity=0.342  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHH
Q 045262          233 RLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAE  312 (594)
Q Consensus       233 RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~  312 (594)
                      +.+.++.-++..+..|..+|..+..++.++.........--..|.+.-..+..+                 -..|+.++.
T Consensus        46 ~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~q-----------------k~~le~e~~  108 (132)
T PF07926_consen   46 KYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQ-----------------KEQLEKELS  108 (132)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----------------HHHHHHHHH
Confidence            345667777777777777777766666554433333222222222222222222                 255999999


Q ss_pred             HHHHHhHHHHHHhhHhHHhhhh
Q 045262          313 DLRKSNMKLQLENSQLARRLES  334 (594)
Q Consensus       313 ELRr~NkeLQ~EKreL~~KL~s  334 (594)
                      ++++...+|..+|.=|--+|++
T Consensus       109 ~~~~r~~dL~~QN~lLh~QlE~  130 (132)
T PF07926_consen  109 ELEQRIEDLNEQNKLLHDQLES  130 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999988777764

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PRK11637 AmiB activator; Provisional

Probab=95.96  E-value=3.1  Score=45.07  Aligned_cols=25  Identities=4%  Similarity=0.175  Sum_probs=13.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262          165 CEQEVKNLKNMVQMLQDREKNLEVE  189 (594)
Q Consensus       165 ~e~EI~~LR~lVeeLqERE~~LE~E  189 (594)
                      ..+++..++..+..++..=..++.+
T Consensus        45 ~~~~l~~l~~qi~~~~~~i~~~~~~   69 (428)
T PRK11637         45 NRDQLKSIQQDIAAKEKSVRQQQQQ   69 (428)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666665555544444333

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=95.95  E-value=1.8  Score=46.38  Aligned_cols=122  Identities=24%  Similarity=0.292  Sum_probs=87.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------hchhhHHH---HHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 045262          165 CEQEVKNLKNMVQMLQDREKNLEVELLEYY------------GLKEQETI---VMELQNRLKLNNMEGRLLNLKIESLQA  229 (594)
Q Consensus       165 ~e~EI~~LR~lVeeLqERE~~LE~ELLEyy------------~LKEQEa~---v~ELe~~L~~k~~Ei~~L~~kI~sLE~  229 (594)
                      +..|-+.++.|++.|++|=..|+...-++-            -.+++..-   +.+...+-..-..|++.|..++..++.
T Consensus        21 cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qG  100 (319)
T PF09789_consen   21 CQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQG  100 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            467899999999999999888888665443            11233322   445555555666777888888888888


Q ss_pred             HHHHHHHHHHH----------------HHhHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHH
Q 045262          230 DNRRLEAQVAD----------------HAKTVSELEAAKTKIKLLKKKLRTEA---EQNREQILAVQERVTKLQEQ  286 (594)
Q Consensus       230 En~RLq~qv~e----------------~~~v~~ELE~ar~kir~LqkKl~~~a---~q~K~qi~~Lkq~v~~Lq~~  286 (594)
                      +++-|+..++.                ...++.+||.++.++..|++-++...   +....+-..-++++.+|..+
T Consensus       101 D~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~E  176 (319)
T PF09789_consen  101 DIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHE  176 (319)
T ss_pred             hHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87777765554                56678899999999999998887543   44556667777888887654

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=95.95  E-value=2  Score=42.79  Aligned_cols=97  Identities=21%  Similarity=0.311  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 045262          166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTV  245 (594)
Q Consensus       166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~  245 (594)
                      -.-|..|+.-|.+++.++...+..+.+.                    ..|...|..-+..++.|...|+.++..|.+-.
T Consensus        26 L~lIksLKeei~emkk~e~~~~k~m~ei--------------------~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK   85 (201)
T PF13851_consen   26 LELIKSLKEEIAEMKKKEERNEKLMAEI--------------------SQENKRLSEPLKKAEEEVEELRKQLKNYEKDK   85 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3457888888888888888777665543                    24677788888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045262          246 SELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQ  286 (594)
Q Consensus       246 ~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~  286 (594)
                      ..|..++++++.++++++..    +-+-..|.|++..++.+
T Consensus        86 ~~L~~~k~rl~~~ek~l~~L----k~e~evL~qr~~kle~E  122 (201)
T PF13851_consen   86 QSLQNLKARLKELEKELKDL----KWEHEVLEQRFEKLEQE  122 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence            99999999888888777654    33445666666666654

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.94  E-value=0.71  Score=48.57  Aligned_cols=43  Identities=19%  Similarity=0.273  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--------HHhhhchhhHHHHHHHHHHHH
Q 045262          167 QEVKNLKNMVQMLQDREKNLEVEL--------LEYYGLKEQETIVMELQNRLK  211 (594)
Q Consensus       167 ~EI~~LR~lVeeLqERE~~LE~EL--------LEyy~LKEQEa~v~ELe~~L~  211 (594)
                      .-+..|++-|.+.++-=..++.+.        -|||..-.-.  -..|.+++.
T Consensus        75 ~~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~--r~~m~~q~~  125 (325)
T PF08317_consen   75 FSCRELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDM--RLLMDNQFQ  125 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHH--HHHHHHHHH
Confidence            346677777777777666666663        4888774333  334445544

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=95.92  E-value=0.37  Score=44.81  Aligned_cols=78  Identities=21%  Similarity=0.265  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 045262          201 TIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQE  278 (594)
Q Consensus       201 a~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq  278 (594)
                      ..|-.|...|.....|+-.+...+..|+.+...|.+++.....-..++.....++..|+.+++..-.+--.=+-++++
T Consensus        16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE   93 (120)
T PF12325_consen   16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGE   93 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            346667777777888888999999999999999999999888888888777777777776666555444333434433

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=95.86  E-value=0.84  Score=53.56  Aligned_cols=68  Identities=26%  Similarity=0.258  Sum_probs=51.8

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 045262          213 NNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKL  283 (594)
Q Consensus       213 k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~L  283 (594)
                      |......++.++.+||+=|.-||.||.+..+   .+|..+.|+.+|-|-+......+|.=..+++++=..|
T Consensus       418 k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k---~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l  485 (861)
T PF15254_consen  418 KTSGSQDCNLELFSLQSLNMSLQNQLQESLK---SQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQEL  485 (861)
T ss_pred             ccCCCcccchhhHHHHHHHHHHHHHHHHHHH---hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566899999999999999999999875   4566678999999888888888876655555443333

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=95.85  E-value=4  Score=47.16  Aligned_cols=91  Identities=18%  Similarity=0.250  Sum_probs=54.7

Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhc-hhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 045262          156 PCRGSEKDDCEQEVKNLKNMVQMLQDREKNLEVELLE---YYGL-KEQETIVMELQNRLKLNNMEGRLLNLKIESLQADN  231 (594)
Q Consensus       156 a~~~~e~~d~e~EI~~LR~lVeeLqERE~~LE~ELLE---yy~L-KEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En  231 (594)
                      +-++.....+..|+.+|+.-++.|.++   |+.++-+   +--| +||+..+.+||..|.....+......-++.|++++
T Consensus        76 a~pse~E~~Lq~E~~~L~kElE~L~~q---lqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk  152 (617)
T PF15070_consen   76 AGPSEVEQQLQAEAEHLRKELESLEEQ---LQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDK  152 (617)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            333333334566778888877777743   2222222   2222 68888899998888877766666666666777666


Q ss_pred             HHHHHHHHHHHhHHHHHH
Q 045262          232 RRLEAQVADHAKTVSELE  249 (594)
Q Consensus       232 ~RLq~qv~e~~~v~~ELE  249 (594)
                      ....-.|++-..++.+|.
T Consensus       153 ~t~SRAlsQN~eLK~QL~  170 (617)
T PF15070_consen  153 ATASRALSQNRELKEQLA  170 (617)
T ss_pred             hHHHHHHHhHHHHHHHHH
Confidence            655555555554444443

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=95.81  E-value=2.8  Score=51.46  Aligned_cols=76  Identities=18%  Similarity=0.100  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhh----hc-chhhhHHHHHHHHHHHHHHhhHHHHHHHHHHh------hh
Q 045262          307 LEAEAEDLRKSNMKLQLENSQLARRLESTQMLE----IS-VLEDGEREALNEMSQRLREENTSLSKEVEKLH------AD  375 (594)
Q Consensus       307 LE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~----~~-~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq------~d  375 (594)
                      ++-++.+|..++..||..+..|.....--++-+    .- ..-+.+++.+++++..|..+++.+..++..++      ..
T Consensus       579 ~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e  658 (1317)
T KOG0612|consen  579 ELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQE  658 (1317)
T ss_pred             HhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            333666777788888877766654322211111    10 11235677888888888888888777665544      45


Q ss_pred             hcchhhH
Q 045262          376 KCAGVEE  382 (594)
Q Consensus       376 RfseVEE  382 (594)
                      +++++|+
T Consensus       659 ~~~~~ek  665 (1317)
T KOG0612|consen  659 RISDSEK  665 (1317)
T ss_pred             HHHHHHH
Confidence            5666665

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=95.80  E-value=2.4  Score=42.60  Aligned_cols=161  Identities=20%  Similarity=0.223  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 045262          166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHA---  242 (594)
Q Consensus       166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~---  242 (594)
                      ..|...|+..|.-+.+==.+|-.++...+   -|-.....+=..-++-..|++.|+--+.+||+++.+|.+|..+.-   
T Consensus        21 ~~en~kL~~~ve~~ee~na~L~~e~~~L~---~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~   97 (193)
T PF14662_consen   21 ADENAKLQRSVETAEEGNAQLAEEITDLR---KQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQ   97 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666666666666666655544433   232333222222223356889999999999999999998876554   


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHh
Q 045262          243 -KTVSELEAAKTKIKLLKKKLRTE---AEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSN  318 (594)
Q Consensus       243 -~v~~ELE~ar~kir~LqkKl~~~---a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~N  318 (594)
                       .++++++....++..|+......   ..+--.....|+-+|..++.-   ...+|+.+..+.+.+.+|..-|+|.|.++
T Consensus        98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l---~~~~da~l~e~t~~i~eL~~~ieEy~~~t  174 (193)
T PF14662_consen   98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESL---ICQRDAILSERTQQIEELKKTIEEYRSIT  174 (193)
T ss_pred             HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence             34555555555555554333222   222223556777777666543   34577889999999999999999999999


Q ss_pred             HHHHHHhhHhHHhh
Q 045262          319 MKLQLENSQLARRL  332 (594)
Q Consensus       319 keLQ~EKreL~~KL  332 (594)
                      -+|-.+++.|--.|
T Consensus       175 eeLR~e~s~LEeql  188 (193)
T PF14662_consen  175 EELRLEKSRLEEQL  188 (193)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999996665

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=95.73  E-value=0.0027  Score=72.56  Aligned_cols=224  Identities=23%  Similarity=0.281  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hchhhHHHHHHHHHHHH---hhhhhhHHHHHHHHHHHHHHHH---HHHHHH
Q 045262          167 QEVKNLKNMVQMLQDREKNLEVELLEYY-GLKEQETIVMELQNRLK---LNNMEGRLLNLKIESLQADNRR---LEAQVA  239 (594)
Q Consensus       167 ~EI~~LR~lVeeLqERE~~LE~ELLEyy-~LKEQEa~v~ELe~~L~---~k~~Ei~~L~~kI~sLE~En~R---Lq~qv~  239 (594)
                      .++..|+..++.|++.-.+++..+.+|. .+.+.+..+.+|+.+..   ..+.++..|+..+..|.....|   |+..|.
T Consensus       239 ~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve  318 (713)
T PF05622_consen  239 VELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVE  318 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            3455566666666665556666666554 23344555555554432   3334555555555555444333   334444


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHH-------------HHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 045262          240 DHAKTVSELEAAKTKIKLLKKKLRT-------------EAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKV  306 (594)
Q Consensus       240 e~~~v~~ELE~ar~kir~LqkKl~~-------------~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lke  306 (594)
                      -|-+=.++++..|.+++.|+-+...             .+...+.++..+++++..|+.+=.+       ..   .+...
T Consensus       319 ~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~-------~~---~~~~~  388 (713)
T PF05622_consen  319 KYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSE-------ES---RRADK  388 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------HH---HHHHH
Confidence            4444444444445555444433221             1222355666777777766654211       11   12333


Q ss_pred             HHHHHHHHHHHhHHHHHHhhHhHHhhh----------hhhhh----------hhcchhh--hH--HHHHHHHHHHHHHhh
Q 045262          307 LEAEAEDLRKSNMKLQLENSQLARRLE----------STQML----------EISVLED--GE--REALNEMSQRLREEN  362 (594)
Q Consensus       307 LE~Ev~ELRr~NkeLQ~EKreL~~KL~----------sAe~~----------~~~~~E~--~e--v~~i~ee~~~LR~~N  362 (594)
                      |+.+...|+..+..|+.++..|..-.+          .++..          .+....+  .+  -..+++.+-.|.++|
T Consensus       389 l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~eeL~~~~~~~~~l~~~~~~~~~~~~~l~~El~~~~l~erl~rLe~EN  468 (713)
T PF05622_consen  389 LEFENKQLEEKLEALEEEKERLQEERDSLRETNEELECSQAQQEQLSQSGEESSSSGDNLSAELNPAELRERLLRLEHEN  468 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccchhhhccchHHHHHHHHHHHHH
Confidence            444444444444444444444332111          11111          0000000  11  134677788999999


Q ss_pred             HHHHHHHHHHhhhhcchhh-HHHHHHHHHHHHHHHHhhc
Q 045262          363 TSLSKEVEKLHADKCAGVE-ELVYLKWINACLRYELRNY  400 (594)
Q Consensus       363 edL~kQVEqLq~dRfseVE-ELVYLRWVNACLR~ELrn~  400 (594)
                      ..|...++++...++..+. +|-=..-.+.+|.-+.+..
T Consensus       469 k~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~  507 (713)
T PF05622_consen  469 KRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREA  507 (713)
T ss_dssp             ---------------------------------------
T ss_pred             HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999889998888876663 3344455666777666543

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=95.68  E-value=2.8  Score=51.35  Aligned_cols=198  Identities=18%  Similarity=0.328  Sum_probs=90.1

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262          162 KDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADH  241 (594)
Q Consensus       162 ~~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~  241 (594)
                      ++.+.+++..+...+..++.+...++.+|-.+      ...+..+..++.....++.-...++..|..+...++.++.+.
T Consensus       602 ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  675 (1201)
T PF12128_consen  602 EEELRERLEQAEDQLQSAEERQEELEKQLKQI------NKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEA  675 (1201)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            33556667777777777777766666665443      123444555555555555555555555555555555443332


Q ss_pred             H-----hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHH
Q 045262          242 A-----KTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRK  316 (594)
Q Consensus       242 ~-----~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr  316 (594)
                      .     .+..++..+...++.++.+++......+.+...+....                .........++...+..+..
T Consensus       676 ~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~----------------~~~~~~~~~~~d~~i~~i~~  739 (1201)
T PF12128_consen  676 KEERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNEL----------------KAQWQELEAELDEQIEQIKQ  739 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHH
Confidence            2     22223333333333333333333332222222222100                00111223344444444444


Q ss_pred             HhHHHHHHhhHhHHhhhhhhhhh-hc-chhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Q 045262          317 SNMKLQLENSQLARRLESTQMLE-IS-VLEDGEREALNEMSQRLREENTSLSKEVEKLHADKCAGVEELVYLKWINA  391 (594)
Q Consensus       317 ~NkeLQ~EKreL~~KL~sAe~~~-~~-~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~dRfseVEELVYLRWVNA  391 (594)
                      .....+.+..+-...|+.+.... +. -.+.       ..+..|+..=+.|.++|.....+|.- |-|  |-+|+.-
T Consensus       740 ~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~-------~~I~~l~~~i~~L~~~l~~ie~~r~~-V~e--Y~~~~~~  806 (1201)
T PF12128_consen  740 EIAAAKQEAKEQLKELEQQYNQELAGKGVDP-------ERIQQLKQEIEQLEKELKRIEERRAE-VIE--YEDWLQE  806 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHHHHHHHHHhHHH-HHH--HHHHHHH
Confidence            44444433333333333332211 11 1111       22355666667777777777766643 333  8888765

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=95.60  E-value=1.2  Score=49.45  Aligned_cols=155  Identities=24%  Similarity=0.281  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHHH--HHHHHHH--HH-------HHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 045262          166 EQEVKNLKNMVQMLQD--REKNLEV--EL-------LEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRL  234 (594)
Q Consensus       166 e~EI~~LR~lVeeLqE--RE~~LE~--EL-------LEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RL  234 (594)
                      .+|...|-..+-+|+|  ||+.|.+  -|       -|.|+.+|.|+.++.     +.-++.+..|......|.+...||
T Consensus       249 kqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~-----Enlqmr~qqleeentelRs~~arl  323 (502)
T KOG0982|consen  249 KQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEK-----ENLQMRDQQLEEENTELRSLIARL  323 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5777777776655544  3333322  12       356677777765432     122344444555555555555555


Q ss_pred             HHHHH----HHHhHHHHHHHHHHHHHHHH----------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh----cCChh
Q 045262          235 EAQVA----DHAKTVSELEAAKTKIKLLK----------KKLRTEAEQNREQILAVQERVTKLQEQAHKAA----AIDPD  296 (594)
Q Consensus       235 q~qv~----e~~~v~~ELE~ar~kir~Lq----------kKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~----~~d~E  296 (594)
                      ...+.    +..+...+||.++-++...|          ++++.+-+.+.+=|.-|..++..++..-...+    ..+. 
T Consensus       324 ksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~a~p~rgrsS-  402 (502)
T KOG0982|consen  324 KSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRRRKLVLANPVRGRSS-  402 (502)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCchh-
Confidence            43322    22345566777777766665          23444444455555666666666665422211    1122 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHh
Q 045262          297 TQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARR  331 (594)
Q Consensus       297 ~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~K  331 (594)
                           -++-+||.||..||.-|.-|..+|.+|--.
T Consensus       403 -----aRe~eleqevkrLrq~nr~l~eqneelngt  432 (502)
T KOG0982|consen  403 -----AREIELEQEVKRLRQPNRILSEQNEELNGT  432 (502)
T ss_pred             -----HHHHHHHHHHHHhccccchhhhhhhhhhhh
Confidence                 467889999999999999999999998433

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=95.52  E-value=5.8  Score=44.94  Aligned_cols=48  Identities=21%  Similarity=0.120  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHh-----hhhcchhhHHHHHHHHHHHHHH
Q 045262          348 REALNEMSQRLREENTSLSKEVEKLH-----ADKCAGVEELVYLKWINACLRY  395 (594)
Q Consensus       348 v~~i~ee~~~LR~~NedL~kQVEqLq-----~dRfseVEELVYLRWVNACLR~  395 (594)
                      +..+.+..+.|...-+||...+..|.     .+||-..-+-|--..-.|=.-|
T Consensus       478 ~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy~nRfr~~~~~V~~~f~~Ae~lF  530 (569)
T PRK04778        478 LEEATEDVETLEEETEELVENATLTEQLIQYANRYRSDNEEVAEALNEAERLF  530 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence            34455556666666666666555554     4555443333333333333333

>smart00787 Spc7 Spc7 kinetochore protein

Probab=95.51  E-value=0.56  Score=49.70  Aligned_cols=115  Identities=25%  Similarity=0.281  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhh-----HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262          168 EVKNLKNMVQMLQDREKNLEVELLEYYGLKEQ-----ETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHA  242 (594)
Q Consensus       168 EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQ-----Ea~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~  242 (594)
                      .+..|-.++-.|.++-..|+.++-....+++.     -..+..++..|+.-..+|.....++..++.+...+...+.+  
T Consensus       166 ~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~--  243 (312)
T smart00787      166 ELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIED--  243 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            34445555555555555555555554444333     12344444555555555555555555555554444444432  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 045262          243 KTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQE  285 (594)
Q Consensus       243 ~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~  285 (594)
                       ...+....+..|.++++.+......+..++..|+.++..||.
T Consensus       244 -~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~  285 (312)
T smart00787      244 -LTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS  285 (312)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence             223333444555555555555555555555555555555553

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PRK09039 hypothetical protein; Validated

Probab=95.49  E-value=0.74  Score=49.12  Aligned_cols=98  Identities=20%  Similarity=0.208  Sum_probs=66.9

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-chhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045262          162 KDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYG-LKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVAD  240 (594)
Q Consensus       162 ~~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~-LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e  240 (594)
                      ..+.+.+|..|+.....++.+..+|+..+-.-+. ..+-+..+..|+..|.....++......|..|..|...|++|+  
T Consensus        76 ~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Ql--  153 (343)
T PRK09039         76 NQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQL--  153 (343)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--
Confidence            3456788999999999999888888887665444 3445666777777887777777777777777777777777773  


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHH
Q 045262          241 HAKTVSELEAAKTKIKLLKKKL  262 (594)
Q Consensus       241 ~~~v~~ELE~ar~kir~LqkKl  262 (594)
                       ..+..+|+.++.+.++.+.+|
T Consensus       154 -a~le~~L~~ae~~~~~~~~~i  174 (343)
T PRK09039        154 -AALEAALDASEKRDRESQAKI  174 (343)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHH
Confidence             333444555555444444433

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.49  E-value=3.2  Score=41.82  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 045262          169 VKNLKNMVQMLQDREKNLEVELLE  192 (594)
Q Consensus       169 I~~LR~lVeeLqERE~~LE~ELLE  192 (594)
                      |..|+.-+...++|...++.+|-+
T Consensus         3 ~~~l~~eld~~~~~~~~~~~~l~~   26 (237)
T PF00261_consen    3 IQQLKDELDEAEERLEEAEEKLKE   26 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555666666666555544

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PHA02562 46 endonuclease subunit; Provisional

Probab=95.40  E-value=5.4  Score=43.87  Aligned_cols=30  Identities=10%  Similarity=0.079  Sum_probs=17.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262          212 LNNMEGRLLNLKIESLQADNRRLEAQVADH  241 (594)
Q Consensus       212 ~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~  241 (594)
                      ....+++.+..++..++.+..+|++++...
T Consensus       217 ~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l  246 (562)
T PHA02562        217 RKQNKYDELVEEAKTIKAEIEELTDELLNL  246 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555556666666666666666555

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=95.35  E-value=3.4  Score=41.20  Aligned_cols=121  Identities=23%  Similarity=0.372  Sum_probs=83.6

Q ss_pred             HHHHhhhc--hhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 045262          189 ELLEYYGL--KEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEA  266 (594)
Q Consensus       189 ELLEyy~L--KEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a  266 (594)
                      ++=.||.-  ...-..|.-|+.++..-........+.+..+..||.+|          ++-|..|+.++..|++++.. .
T Consensus        13 ~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L----------~epL~~a~~e~~eL~k~L~~-y   81 (201)
T PF13851_consen   13 EIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRL----------SEPLKKAEEEVEELRKQLKN-Y   81 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHHHH-H
Confidence            44456652  23334455555555444444444555555555555554          55677888888999999886 6


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhh
Q 045262          267 EQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQM  337 (594)
Q Consensus       267 ~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~  337 (594)
                      .+.|..+..++.++..++.+                 +++|+.|-.-|......|+.|..+|-.|...+=.
T Consensus        82 ~kdK~~L~~~k~rl~~~ek~-----------------l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~  135 (201)
T PF13851_consen   82 EKDKQSLQNLKARLKELEKE-----------------LKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQ  135 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888888888888776544                 7888888888999999999999999888777643

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=95.31  E-value=3.1  Score=42.09  Aligned_cols=76  Identities=22%  Similarity=0.310  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-chhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262          166 EQEVKNLKNMVQMLQDREKNLEVELLEYYG-LKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADH  241 (594)
Q Consensus       166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~-LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~  241 (594)
                      ..||-.||..+++++-.-...+.++.+..+ +......+...+++|..+..|+..|+.+|..|+.|...|+..++..
T Consensus        30 ~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~  106 (202)
T PF06818_consen   30 DSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA  106 (202)
T ss_pred             HhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence            578999999999998888888888887776 5666677888899999999999999999999999999999888875

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=95.30  E-value=4.2  Score=45.17  Aligned_cols=179  Identities=21%  Similarity=0.283  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 045262          201 TIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERV  280 (594)
Q Consensus       201 a~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v  280 (594)
                      ..+..+++.+....-+...|...|.+++.+...+..++.+...   .+...+.+|..+...+...-.|-++|-..|-.++
T Consensus        45 ~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~---~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L  121 (420)
T COG4942          45 KEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETAD---DLKKLRKQIADLNARLNALEVQEREQRRRLAEQL  121 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444455555555566666666666555554432   2223334444444444444444444544455555


Q ss_pred             HHHHHHHHH------hhcC------------ChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcc
Q 045262          281 TKLQEQAHK------AAAI------------DPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISV  342 (594)
Q Consensus       281 ~~Lq~~E~e------~~~~------------d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~  342 (594)
                      ..++.-...      ....            ..-...+.+.+..|.....+|...-..+.-|+.+|...+..-       
T Consensus       122 ~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq-------  194 (420)
T COG4942         122 AALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQ-------  194 (420)
T ss_pred             HHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence            444432000      0000            011223444555555555555555555555555543221110       


Q ss_pred             hhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHHHh
Q 045262          343 LEDGEREALNEMSQRLREENTSLSKEVEKLHADKCAGVEELVYLKWINACLRYELR  398 (594)
Q Consensus       343 ~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~dRfseVEELVYLRWVNACLR~ELr  398 (594)
                           + .=.+....++.+...+..+++..-..+-...+||   +==-+-|+.++.
T Consensus       195 -----~-~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL---~~~~~~L~~~Ia  241 (420)
T COG4942         195 -----R-AQQAKLAQLLEERKKTLAQLNSELSADQKKLEEL---RANESRLKNEIA  241 (420)
T ss_pred             -----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHH
Confidence                 1 1123345666666777666666655555555554   233345565554

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=95.29  E-value=11  Score=46.72  Aligned_cols=39  Identities=41%  Similarity=0.618  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHH
Q 045262          248 LEAAKTKIKLLKKKLRTEAEQNREQ-------ILAVQERVTKLQEQ  286 (594)
Q Consensus       248 LE~ar~kir~LqkKl~~~a~q~K~q-------i~~Lkq~v~~Lq~~  286 (594)
                      |+..+.+.-.+.++++..++..+++       +..|+.+++.|+..
T Consensus       593 le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~  638 (1317)
T KOG0612|consen  593 LEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEET  638 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            3444444444555555555555443       34455555555543

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=95.29  E-value=8.2  Score=49.50  Aligned_cols=84  Identities=24%  Similarity=0.274  Sum_probs=51.0

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-------------------HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 045262          203 VMELQNRLKLNNMEGRLLNLKIESLQADNRRLE-------------------AQVADHAKTVSELEAAKTKIKLLKKKLR  263 (594)
Q Consensus       203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq-------------------~qv~e~~~v~~ELE~ar~kir~LqkKl~  263 (594)
                      +.-|++.|.....++..+...+..|+.|+.+-.                   ....++..+.++|+.....|-+|..++.
T Consensus      1259 l~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~ 1338 (1822)
T KOG4674|consen 1259 LAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKKELN 1338 (1822)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555666666666666666666777766655522                   2233455556666666666666666666


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHH
Q 045262          264 TEAEQNREQILAVQERVTKLQEQ  286 (594)
Q Consensus       264 ~~a~q~K~qi~~Lkq~v~~Lq~~  286 (594)
                      +..++.+.++..+...+.-+..+
T Consensus      1339 ~~q~~~k~qld~l~~e~~~lt~~ 1361 (1822)
T KOG4674|consen 1339 RLQEKIKKQLDELNNEKANLTKE 1361 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666665555555443

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=95.18  E-value=8.2  Score=44.69  Aligned_cols=135  Identities=19%  Similarity=0.222  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHH-----HHHHHHHHHHHHhHHHHHH
Q 045262          176 VQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLK-IESLQAD-----NRRLEAQVADHAKTVSELE  249 (594)
Q Consensus       176 VeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~k-I~sLE~E-----n~RLq~qv~e~~~v~~ELE  249 (594)
                      +.+.++--..|+--.-+|-++|.|+..|.-|+..|..-....+..-.. ++..+.+     +++...-..+...+.++++
T Consensus       120 ~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~  199 (629)
T KOG0963|consen  120 SEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLE  199 (629)
T ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444455555567788888999988888877655554443332 2233332     2333333444445555666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 045262          250 AAKTKIKLLKKKLRTEAEQNREQILAVQER----VTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKS  317 (594)
Q Consensus       250 ~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~----v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~  317 (594)
                      .+..+|..||+.+..-.    .++..++..    ++...+ |...+-  .+++.--+++..||-|+..||-.
T Consensus       200 ~le~ki~~lq~a~~~t~----~el~~~~s~~dee~~~k~a-ev~lim--~eLe~aq~ri~~lE~e~e~L~~q  264 (629)
T KOG0963|consen  200 ELEKKISSLQSAIEDTQ----NELFDLKSKYDEEVAAKAA-EVSLIM--TELEDAQQRIVFLEREVEQLREQ  264 (629)
T ss_pred             HHHHHHHHHHHHHHhhh----hHHHHHHHhhhhhhHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666655544332    233333332    443322 222211  34555667788888888888753

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=95.13  E-value=11  Score=45.70  Aligned_cols=44  Identities=20%  Similarity=0.273  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHH-------HHHHHHhhhchhhHHHHHHHHHHHHhhhh
Q 045262          172 LKNMVQMLQDREKNL-------EVELLEYYGLKEQETIVMELQNRLKLNNM  215 (594)
Q Consensus       172 LR~lVeeLqERE~~L-------E~ELLEyy~LKEQEa~v~ELe~~L~~k~~  215 (594)
                      ||..|+.|.|+=..|       ...|+|+..+|=|--.++|...++-.+.+
T Consensus       229 Lr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa  279 (1243)
T KOG0971|consen  229 LRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQA  279 (1243)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666554444       45678887777666666666655544433

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.10  E-value=3.5  Score=41.55  Aligned_cols=39  Identities=21%  Similarity=0.209  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhh
Q 045262          301 LQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLE  339 (594)
Q Consensus       301 lq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~  339 (594)
                      ...++.||+-....=.....++...+.|..+|..|+.++
T Consensus       154 ~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Ra  192 (237)
T PF00261_consen  154 GNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRA  192 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444445555555555555555544

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=95.05  E-value=8.1  Score=44.77  Aligned_cols=185  Identities=21%  Similarity=0.145  Sum_probs=102.1

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH---------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262          203 VMELQNRLKLNNMEGRLLNLKIESLQADNRRL---------------EAQVADHAKTVSELEAAKTKIKLLKKKLRTEAE  267 (594)
Q Consensus       203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RL---------------q~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~  267 (594)
                      -..|.++....+.++..+..+|.+|+.-+..-               -...+++..+..+|+.|+.+|..|++.+.....
T Consensus       184 e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~  263 (629)
T KOG0963|consen  184 EAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLRE  263 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555666777888899999987654432               244678888999999999999999999888777


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHH----HHHHhhHhHHhhhhhhhhhhcch
Q 045262          268 QNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMK----LQLENSQLARRLESTQMLEISVL  343 (594)
Q Consensus       268 q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~Nke----LQ~EKreL~~KL~sAe~~~~~~~  343 (594)
                      |....-...+.             ++-+++...-..+.-+|.++..|=.-...    |+++.....-.+.+-+.....  
T Consensus       264 ql~~~N~~~~~-------------~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~--  328 (629)
T KOG0963|consen  264 QLAKANSSKKL-------------AKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKA--  328 (629)
T ss_pred             HHHhhhhhhhh-------------ccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            76432211111             12233333333444445444433222222    222322232222222222221  


Q ss_pred             hhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhcchhhH-----------HHHHHHHHHHHHHHHhhcCCC
Q 045262          344 EDGEREALNEMSQRLREENTSLSKEVEKLHADKCAGVEE-----------LVYLKWINACLRYELRNYQPP  403 (594)
Q Consensus       344 E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~dRfseVEE-----------LVYLRWVNACLR~ELrn~q~p  403 (594)
                      -+.+.+.+++..+. |.+|+++-++|--|+.=-|++-++           =.-|===|+-|.+|+--+-.+
T Consensus       329 ~~~~leel~~kL~~-~sDYeeIK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~~  398 (629)
T KOG0963|consen  329 KISELEELKEKLNS-RSDYEEIKKELSILKAIEFGDSEEANDEDETAKTLESLLLEKNRKLQNENASLRVA  398 (629)
T ss_pred             HHHHHHHHHHHHhh-hccHHHHHHHHHHHHHhhcCCcccccccccccchHHHHHHHHHhhhhHHHHHHhcc
Confidence            11222333333332 477888888888888777762221           012333588888887655443

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.02  E-value=6.3  Score=48.48  Aligned_cols=26  Identities=31%  Similarity=0.353  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHh
Q 045262          348 REALNEMSQRLREENTSLSKEVEKLH  373 (594)
Q Consensus       348 v~~i~ee~~~LR~~NedL~kQVEqLq  373 (594)
                      +..+.++...+...-.+..+.++.|+
T Consensus       544 l~~~k~~l~~~k~e~~~~~k~l~~~~  569 (1293)
T KOG0996|consen  544 LDDLKEELPSLKQELKEKEKELPKLR  569 (1293)
T ss_pred             HHHHHHhhhhHHHHHHHHHHhHHHHH
Confidence            34445555555555555555555554

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=95.01  E-value=2.8  Score=45.71  Aligned_cols=70  Identities=17%  Similarity=0.161  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcch-hhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 045262          306 VLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVL-EDGEREALNEMSQRLREENTSLSKEVEKLHAD  375 (594)
Q Consensus       306 eLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~-E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~d  375 (594)
                      .|...+.+++.....|+.+...|...++..+....... ...+...+..+.+..+..|+.|.+.+++.+..
T Consensus       314 ~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~~  384 (498)
T TIGR03007       314 QLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEVS  384 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444455555555555555555555555554443221 12334556677777777788888777776654

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=94.95  E-value=4.2  Score=47.61  Aligned_cols=110  Identities=19%  Similarity=0.219  Sum_probs=56.5

Q ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHH
Q 045262          211 KLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAK-TKIKLLK----KKLRTEAEQNREQILAVQERVTKLQE  285 (594)
Q Consensus       211 ~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar-~kir~Lq----kKl~~~a~q~K~qi~~Lkq~v~~Lq~  285 (594)
                      ....+|++.|...-..-++|-+.|++-++....++..||.+. -.+.++|    .++........+.+..|..++-+|+.
T Consensus        97 e~qa~Ele~l~~ae~agraEae~Lraala~ae~~R~~lEE~~q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~  176 (739)
T PF07111_consen   97 EAQAEELEALARAEKAGRAEAEELRAALAGAEVVRKNLEEGSQRELEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEK  176 (739)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334456666665556666777777777777777776664332 2222222    23333333344445555555555543


Q ss_pred             HHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhh
Q 045262          286 QAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQM  337 (594)
Q Consensus       286 ~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~  337 (594)
                      .                 ++.||......-......|.|...|-..|.-++.
T Consensus       177 ~-----------------L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~  211 (739)
T PF07111_consen  177 S-----------------LESLETRRAGEAKELAEAQREADLLREQLSKTQE  211 (739)
T ss_pred             H-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            2                 4445544444444444445555555555554443

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>smart00787 Spc7 Spc7 kinetochore protein

Probab=94.94  E-value=2.7  Score=44.65  Aligned_cols=42  Identities=19%  Similarity=0.325  Sum_probs=23.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhh
Q 045262          296 DTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQM  337 (594)
Q Consensus       296 E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~  337 (594)
                      +++.+.+.+.+++.++.+++........++.++-..+..|+.
T Consensus       219 ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~  260 (312)
T smart00787      219 EIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK  260 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555555555555555555554

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=94.93  E-value=0.007  Score=69.26  Aligned_cols=170  Identities=23%  Similarity=0.286  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH------HHHHhHHHHHHHHHHHHHHHHHHHHh
Q 045262          217 GRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRT------EAEQNREQILAVQERVTKLQEQAHKA  290 (594)
Q Consensus       217 i~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~------~a~q~K~qi~~Lkq~v~~Lq~~E~e~  290 (594)
                      ...+..++..|+.|+.++.+...++..-..+++   ..|..|+.+...      .+..-|-++..|+++..++..-|..+
T Consensus       241 ~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le---~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~v  317 (713)
T PF05622_consen  241 LADLRAQLRRLREELERLEEQRDDLKIELEELE---KEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEV  317 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            334555556666666666555554433222222   233333333332      22233334455555444444433221


Q ss_pred             hcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcc---------hhhhHHHHHHHHHHHHHHh
Q 045262          291 AAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISV---------LEDGEREALNEMSQRLREE  361 (594)
Q Consensus       291 ~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~---------~E~~ev~~i~ee~~~LR~~  361 (594)
                          .-..+|++.+.+|...|.+|+-.|..|...+..|--.|..+.+.-.-+         .+.. ......+++.|...
T Consensus       318 ----e~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~-l~~~~~~~~~l~~e  392 (713)
T PF05622_consen  318 ----EKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQK-LSEESRRADKLEFE  392 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence                112356666666667777777777776666666655554443311100         0000 11223446677788


Q ss_pred             hHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Q 045262          362 NTSLSKEVEKLHADKCAGVEELVYLKWINACLR  394 (594)
Q Consensus       362 NedL~kQVEqLq~dRfseVEELVYLRWVNACLR  394 (594)
                      |..|...++.|+..+-.-+.|.--|||.+.-|+
T Consensus       393 ~~~L~ek~~~l~~eke~l~~e~~~L~e~~eeL~  425 (713)
T PF05622_consen  393 NKQLEEKLEALEEEKERLQEERDSLRETNEELE  425 (713)
T ss_dssp             ---------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            888888888888888888888888888776554

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=94.90  E-value=3.7  Score=39.31  Aligned_cols=111  Identities=18%  Similarity=0.237  Sum_probs=70.2

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHH
Q 045262          204 MELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEA---EQNREQILAVQERV  280 (594)
Q Consensus       204 ~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a---~q~K~qi~~Lkq~v  280 (594)
                      ...++.|+.-..+.+.|..+|.+|+.+..-.+..   ...+..+.|-+++.|.-|+.++...+   ++...++..|...-
T Consensus         6 l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~---~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk   82 (140)
T PF10473_consen    6 LHVEEKLKESESEKDSLEDHVESLERELEMSQEN---KECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEK   82 (140)
T ss_pred             HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456788888889999999999999997776644   33455666777777777776665443   33333444443322


Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Q 045262          281 TKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQ  327 (594)
Q Consensus       281 ~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKre  327 (594)
                      ..|.          .+++++-.++.+||.-...+++....+..++..
T Consensus        83 ~~L~----------k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q  119 (140)
T PF10473_consen   83 ENLD----------KELQKKQEKVSELESLNSSLENLLQEKEQEKVQ  119 (140)
T ss_pred             HHHH----------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            2222          345555566777777776666666666666444

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=94.89  E-value=9.9  Score=44.08  Aligned_cols=50  Identities=22%  Similarity=0.290  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045262          220 LNLKIESLQADNRRLEAQ----VADHAKTVSELEAAKTKIKLLKKKLRTEAEQN  269 (594)
Q Consensus       220 L~~kI~sLE~En~RLq~q----v~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~  269 (594)
                      |...+..|+.|...|..+    +.+...+-.-...-..++.+|+++++....+.
T Consensus        85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~  138 (617)
T PF15070_consen   85 LQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQ  138 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444433    32222222222344566777777666655443

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=94.87  E-value=9  Score=45.83  Aligned_cols=58  Identities=21%  Similarity=0.264  Sum_probs=39.0

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hchhhHHH-------HHHHHHHHHhhhhhhH
Q 045262          161 EKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYY--------GLKEQETI-------VMELQNRLKLNNMEGR  218 (594)
Q Consensus       161 e~~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy--------~LKEQEa~-------v~ELe~~L~~k~~Ei~  218 (594)
                      +...++..+.++.+.+..||-+=.+||+|+--+-        .|||-+..       +-+|+..|.+++-+|-
T Consensus        93 dv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf  165 (1265)
T KOG0976|consen   93 DVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIF  165 (1265)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHH
Confidence            4445567788999999999999999998876542        33444433       4456666666665553

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=94.86  E-value=3.7  Score=48.07  Aligned_cols=112  Identities=23%  Similarity=0.311  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHhhcC---
Q 045262          218 RLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQN-REQILAVQERVTKLQEQAHKAAAI---  293 (594)
Q Consensus       218 ~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~-K~qi~~Lkq~v~~Lq~~E~e~~~~---  293 (594)
                      ..+.-.|..|+.+|+-|+..+..+...+.   .=|.-+..|.||+..+.++- .-+-.+-.++-++.++++. +++.   
T Consensus       456 r~lk~eL~qlr~ene~Lq~Kl~~L~~aRq---~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~-aar~~~~  531 (697)
T PF09726_consen  456 RSLKSELSQLRQENEQLQNKLQNLVQARQ---QDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEK-AARALAQ  531 (697)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh-hhhcccc
Confidence            35666666677777766665555444332   22333333444443333221 1122222223333332221 1111   


Q ss_pred             -----ChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhh
Q 045262          294 -----DPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLE  333 (594)
Q Consensus       294 -----d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~  333 (594)
                           ..-.|.=.++.++||.|+..||+-.+..+++++.|-..+.
T Consensus       532 ~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~  576 (697)
T PF09726_consen  532 AQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQ  576 (697)
T ss_pred             chhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 0112222335566777777777777666666666666553

; GO: 0016021 integral to membrane

>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function

Probab=94.85  E-value=0.095  Score=47.24  Aligned_cols=92  Identities=25%  Similarity=0.403  Sum_probs=64.4

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 045262          203 VMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTK  282 (594)
Q Consensus       203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~  282 (594)
                      ..+|..+|..-..|...|+++|.-|+.+|+.|..++..|..--..++.                             ++.
T Consensus         3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~-----------------------------~~~   53 (96)
T PF11365_consen    3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDS-----------------------------LAK   53 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-----------------------------ccc
Confidence            578999999999999999999999999999999988877643333320                             000


Q ss_pred             HHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Q 045262          283 LQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQ  327 (594)
Q Consensus       283 Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKre  327 (594)
                      +-.. ..-....+.++..   ++-.+.++.+|.+...+||.|||=
T Consensus        54 ~~~g-~~~~~~~~~l~~e---Lk~a~~qi~~Ls~kv~eLq~ENRv   94 (96)
T PF11365_consen   54 LSEG-GSPSGREAELQEE---LKLAREQINELSGKVMELQYENRV   94 (96)
T ss_pred             CCCC-CCCccccHHHHHH---HHHHHHHHHHHhhHHHHHhhcccc
Confidence            0000 0001122344444   555888999999999999999983

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=94.83  E-value=8.8  Score=43.24  Aligned_cols=44  Identities=16%  Similarity=0.272  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 045262          220 LNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLR  263 (594)
Q Consensus       220 L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~  263 (594)
                      +...+..-+.+-.+|..++.....+..+|..+...+..||.++.
T Consensus       216 ~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~  259 (522)
T PF05701_consen  216 WEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELE  259 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444444443333344444444444444444333

Several sequences in this family are described as being myosin heavy chain-like.

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=94.82  E-value=10  Score=43.84  Aligned_cols=60  Identities=23%  Similarity=0.299  Sum_probs=43.3

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHHhhhhhhHHHH
Q 045262          162 KDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGL-KEQETIVMELQNRLKLNNMEGRLLN  221 (594)
Q Consensus       162 ~~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~L-KEQEa~v~ELe~~L~~k~~Ei~~L~  221 (594)
                      -.+...+|..|+..+.++..--..|..++-....- .+++....+||.+++++..-+++|-
T Consensus       330 l~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~  390 (594)
T PF05667_consen  330 LEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLP  390 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            35667789999999999888888888877766654 3455667778887777655555554

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=94.81  E-value=11  Score=44.28  Aligned_cols=169  Identities=27%  Similarity=0.393  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHhhhchhhHHH-----------HHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 045262          168 EVKNLKNMVQMLQDREKNLEVEL----LEYYGLKEQETI-----------VMELQNRLKLNNMEGRLLNLKIESLQADNR  232 (594)
Q Consensus       168 EI~~LR~lVeeLqERE~~LE~EL----LEyy~LKEQEa~-----------v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~  232 (594)
                      |-..+....++|+.+|..|-.-|    -+...|+.|-+.           |.+|.++|...+.-=..|......|.-|+.
T Consensus       423 ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk  502 (786)
T PF05483_consen  423 EKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKK  502 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567777888888887765432    234445444443           455666665433333344555566666666


Q ss_pred             HHHHHHHHHH----hHHHHHHHHHHH-------HHHHH---HHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHhhcCChhH
Q 045262          233 RLEAQVADHA----KTVSELEAAKTK-------IKLLK---KKLRTEAEQNREQILAVQERVTK-LQEQAHKAAAIDPDT  297 (594)
Q Consensus       233 RLq~qv~e~~----~v~~ELE~ar~k-------ir~Lq---kKl~~~a~q~K~qi~~Lkq~v~~-Lq~~E~e~~~~d~E~  297 (594)
                      .|+-+.....    ++.+.+...+.+       |..|.   .+++-+.+..+.++..-...|.. |...|+.+.....++
T Consensus       503 ~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~  582 (786)
T PF05483_consen  503 QLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEI  582 (786)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHH
Confidence            6654333222    222222222221       11111   22233333334444433444433 555566666677888


Q ss_pred             HHHHHHHHHHHHHHHHHHH-------HhHHHHHHhhHhHHhhhhhhh
Q 045262          298 QSRLQRLKVLEAEAEDLRK-------SNMKLQLENSQLARRLESTQM  337 (594)
Q Consensus       298 ekKlq~lkeLE~Ev~ELRr-------~NkeLQ~EKreL~~KL~sAe~  337 (594)
                      .++...++-||..+--||+       ...+||.+|--|-.+. +|+.
T Consensus       583 ~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~-~aE~  628 (786)
T PF05483_consen  583 LKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKI-TAES  628 (786)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHH
Confidence            8888888989988888887       4567888888776664 4444

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=94.78  E-value=5.6  Score=45.95  Aligned_cols=26  Identities=19%  Similarity=0.285  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045262          169 VKNLKNMVQMLQDREKNLEVELLEYY  194 (594)
Q Consensus       169 I~~LR~lVeeLqERE~~LE~ELLEyy  194 (594)
                      +..|...+.+++.+=...|.+|..|.
T Consensus       196 ~~~L~~ql~~l~~~l~~aE~~l~~fk  221 (754)
T TIGR01005       196 ADFLAPEIADLSKQSRDAEAEVAAYR  221 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46666777777777666777777773

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=94.73  E-value=6  Score=42.55  Aligned_cols=159  Identities=18%  Similarity=0.233  Sum_probs=79.0

Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------------------hHHHHHHHHHHHHHHHHHHH---H
Q 045262          205 ELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHA------------------KTVSELEAAKTKIKLLKKKL---R  263 (594)
Q Consensus       205 ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~------------------~v~~ELE~ar~kir~LqkKl---~  263 (594)
                      =|-++|.--..|-|.|...++.|+.....|.....+..                  .+..-|..+|..|+-|+..+   +
T Consensus        13 IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lr   92 (319)
T PF09789_consen   13 ILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELR   92 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444455666666666666665555554333222                  22233355666666666433   3


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcch
Q 045262          264 TEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVL  343 (594)
Q Consensus       264 ~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~  343 (594)
                      .....+++++-.|+++++..+..-...... .....|-+-|..|    +.++..+.+||++-+-+               
T Consensus        93 qkl~E~qGD~KlLR~~la~~r~~~~~~~~~-~~~~ere~lV~qL----Ek~~~q~~qLe~d~qs~---------------  152 (319)
T PF09789_consen   93 QKLNEAQGDIKLLREKLARQRVGDEGIGAR-HFPHEREDLVEQL----EKLREQIEQLERDLQSL---------------  152 (319)
T ss_pred             HHHHHHhchHHHHHHHHHhhhhhhcccccc-ccchHHHHHHHHH----HHHHHHHHHHHHHHHHH---------------
Confidence            333445666777777777766554322222 2223344444444    44555555555543332               


Q ss_pred             hhhHHHHHHHHHHHHHHhhHHHHHHHHHHhh---hhcchhhHHH
Q 045262          344 EDGEREALNEMSQRLREENTSLSKEVEKLHA---DKCAGVEELV  384 (594)
Q Consensus       344 E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~---dRfseVEELV  384 (594)
                       -++-+.++.|.+..|.--.+|-.|+..+=+   .|.-||+-|+
T Consensus       153 -lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi  195 (319)
T PF09789_consen  153 -LDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALI  195 (319)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHH
Confidence             122233345555555555555555555433   2555565555

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=94.71  E-value=4.5  Score=48.99  Aligned_cols=177  Identities=22%  Similarity=0.241  Sum_probs=89.3

Q ss_pred             CCccchhhHHhhhhccCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH-HHHh
Q 045262          115 NSYLLPEFNELVKEIDFGGPNVGYHPKKVIVTPKSDVENPRPCRGSEKDDCEQEVKNLKNMVQMLQDREKNLEVE-LLEY  193 (594)
Q Consensus       115 d~~lLpEf~dl~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~e~~d~e~EI~~LR~lVeeLqERE~~LE~E-LLEy  193 (594)
                      -..==.++.+|+.-|.+-..                  .+-.|-+++....+..+..    |+-|.|=|...=.+ |+.|
T Consensus       122 ~a~t~s~i~elv~~fNIQi~------------------NLCqFLpQDkV~EFa~L~p----i~LL~eTekAig~~~ll~~  179 (1072)
T KOG0979|consen  122 SATTKSEIEELVAHFNIQID------------------NLCQFLPQDKVKEFARLSP----IELLVETEKAIGAEELLQY  179 (1072)
T ss_pred             chhhhHHHHHHHHHHhcccC------------------chhhhccHHHHHHHHcCCh----HHHHHHHHHhcCchhhHHH
Confidence            33445788999987765433                  2334444444444444433    33344445555444 6655


Q ss_pred             -hhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHhHH
Q 045262          194 -YGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKL-RTEAEQNRE  271 (594)
Q Consensus       194 -y~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl-~~~a~q~K~  271 (594)
                       +.|.++...-..|+.-+.-++.-+..|...|..|+-+-++++           |.+.-+++|+.|..+. -...+....
T Consensus       180 h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~r-----------er~~~~~~Ie~l~~k~~~v~y~~~~~  248 (1072)
T KOG0979|consen  180 HIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVR-----------ERERKKSKIELLEKKKKWVEYKKHDR  248 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhccccchHhhhH
Confidence             578888888888877777766666666655555555544443           4455566666664222 223333333


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Q 045262          272 QILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQ  327 (594)
Q Consensus       272 qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKre  327 (594)
                      +...+++-+.++.+......+.-..++.   ..++||.++.|++...+..+.+-++
T Consensus       249 ey~~~k~~~~r~k~~~r~l~k~~~pi~~---~~eeLe~~~~et~~~~s~~~~~~~e  301 (1072)
T KOG0979|consen  249 EYNAYKQAKDRAKKELRKLEKEIKPIED---KKEELESEKKETRSKISQKQRELNE  301 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhh---hhhhHHhHHHhHHHHHHHHHHHHHH
Confidence            3333333333333222111111112221   2444555555555555555555444

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.67  E-value=15  Score=44.99  Aligned_cols=81  Identities=27%  Similarity=0.303  Sum_probs=57.7

Q ss_pred             ccCCCCCCCCCCCCCC----CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHH
Q 045262          145 VTPKSDVENPRPCRGS----EKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLL  220 (594)
Q Consensus       145 ~~~~~~~~~~~a~~~~----e~~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L  220 (594)
                      +|-+.||-.|.---+.    -.++.-.+|..|.....+|+.-...|+.==-+..+|+-|-.....|+++|..+.-++..+
T Consensus       648 VTl~GDV~dP~GtlTGGs~~~~a~~L~~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~  727 (1174)
T KOG0933|consen  648 VTLEGDVYDPSGTLTGGSRSKGADLLRQLQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALL  727 (1174)
T ss_pred             eeecCceeCCCCcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667777666543322    234456778888888888887777766655556667777777889999999998888888


Q ss_pred             HHHHH
Q 045262          221 NLKIE  225 (594)
Q Consensus       221 ~~kI~  225 (594)
                      ...++
T Consensus       728 ~~r~~  732 (1174)
T KOG0933|consen  728 EKRLE  732 (1174)
T ss_pred             HHHHh
Confidence            77764

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=94.65  E-value=4  Score=47.18  Aligned_cols=175  Identities=16%  Similarity=0.194  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----HH---
Q 045262          202 IVMELQNRLKLNNMEGRLLNLKIESLQADN-----RRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEA-----EQ---  268 (594)
Q Consensus       202 ~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En-----~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a-----~q---  268 (594)
                      .+.+++.+|.....++..++.+-..+-.++     ++|.+-=.+...+..++..|+++...+++.+....     ..   
T Consensus       202 ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~  281 (754)
T TIGR01005       202 EIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLS  281 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhc
Confidence            344555555555555555544432222121     23333333444555666667777777776665210     00   


Q ss_pred             h----HHHHHHHHHHHHHHHHHHHH----hhcCChhHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhh-------HhHHhh
Q 045262          269 N----REQILAVQERVTKLQEQAHK----AAAIDPDTQSRLQRLKVLEAEAE-DLRKSNMKLQLENS-------QLARRL  332 (594)
Q Consensus       269 ~----K~qi~~Lkq~v~~Lq~~E~e----~~~~d~E~ekKlq~lkeLE~Ev~-ELRr~NkeLQ~EKr-------eL~~KL  332 (594)
                      +    -..|..|+.+...++.+-.+    -..+++.+..-...+.+|+..+. |+++....++.+..       .|..+|
T Consensus       282 ~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l  361 (754)
T TIGR01005       282 SQLKLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDV  361 (754)
T ss_pred             CcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0    03445555555555544222    22345554444444455554432 23333333332222       333333


Q ss_pred             hhhhhhhhcc-hhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Q 045262          333 ESTQMLEISV-LEDGEREALNEMSQRLREENTSLSKEVEKLHADK  376 (594)
Q Consensus       333 ~sAe~~~~~~-~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~dR  376 (594)
                      +..+.++... ....+...+..+.+..+..|+.|....++.+...
T Consensus       362 ~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~  406 (754)
T TIGR01005       362 NQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQ  406 (754)
T ss_pred             HHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3333333221 1223345677778888888888888888877665

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants

Probab=94.55  E-value=10  Score=42.67  Aligned_cols=244  Identities=16%  Similarity=0.213  Sum_probs=118.2

Q ss_pred             CCCCCccchhhHHhhhhccCCCCCCCCCCccccccCCCCCC-----CCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 045262          112 RDNNSYLLPEFNELVKEIDFGGPNVGYHPKKVIVTPKSDVE-----NPRPCRGSEKDDCEQEVKNLKNMVQMLQDREKNL  186 (594)
Q Consensus       112 ~d~d~~lLpEf~dl~~e~d~~~~~~~~~~~~~~~~~~~~~~-----~~~a~~~~e~~d~e~EI~~LR~lVeeLqERE~~L  186 (594)
                      -+.-+.||-||.+|=..+.|-.++.......    +-+..-     .|.+......++.+.+++.=|..|-+..-+=..|
T Consensus       221 ~~EkE~Ll~EIq~Lk~qL~~~~~ss~s~~~~----~~sll~~s~~~~~~~~~~~~~~~~~~~le~er~~wtE~ES~WIsL  296 (488)
T PF06548_consen  221 MGEKEVLLEEIQDLKSQLQYYTDSSMSTDRL----RSSLLQRSYQLRPSAIPESGDENAEEELEQERQRWTEAESKWISL  296 (488)
T ss_pred             cchHHHHHHHHHHHHHHHHhccccccccccc----cccHHhhhhccCCCCCcccCCCchhhhHHHHHHHHHHHHhhhhhh
Confidence            3446689999999887665544433221110    111111     1111222234455677777777787776655544


Q ss_pred             HHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHH
Q 045262          187 EVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKI----ESLQADNRRLEAQVADHAKTVSELEAAKTK---IKLLK  259 (594)
Q Consensus       187 E~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI----~sLE~En~RLq~qv~e~~~v~~ELE~ar~k---ir~Lq  259 (594)
                      --+|                .-.|.....-++.+..++    .+-++=+.-|+..+-.++.++++-.....|   +-..|
T Consensus       297 teeL----------------R~dle~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll~~H  360 (488)
T PF06548_consen  297 TEEL----------------RVDLESSRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDLLARH  360 (488)
T ss_pred             HHHH----------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4333                222222222222222221    222333455667777777777755433333   33334


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHH-HHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhh
Q 045262          260 KKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLK-VLEAEAEDLRKSNMKLQLENSQLARRLESTQML  338 (594)
Q Consensus       260 kKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lk-eLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~  338 (594)
                      ++|..-...       +|..+++-=.+.. .++.-..+..-+..++ +=|-|..=||.-|+.||.|.|+-+.-..+|=-.
T Consensus       361 r~i~egI~d-------VKkaAakAg~kG~-~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEl  432 (488)
T PF06548_consen  361 RRIMEGIED-------VKKAAAKAGVKGA-ESRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGEL  432 (488)
T ss_pred             HHHHHHHHH-------HHHHHHHhccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHH
Confidence            444433222       2222222111110 0000011111111111 235566678889999999987633333333222


Q ss_pred             hhcchhhhHH-HHHHHHHHHHHHhhHHHHHHHHHHhhhhcchhhHH
Q 045262          339 EISVLEDGER-EALNEMSQRLREENTSLSKEVEKLHADKCAGVEEL  383 (594)
Q Consensus       339 ~~~~~E~~ev-~~i~ee~~~LR~~NedL~kQVEqLq~dRfseVEEL  383 (594)
                      ...+.|..+. ..+.+.+....++|+.+-+|+|.|+..+-.++.=|
T Consensus       433 lvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~kh~~Ei~t~  478 (488)
T PF06548_consen  433 LVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRKHKMEISTM  478 (488)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222233332 22345577788999999999999999987766433

Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=94.39  E-value=14  Score=43.63  Aligned_cols=77  Identities=25%  Similarity=0.256  Sum_probs=46.8

Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHH----HHHHHH------HHHHHhhhchhhH-------------------HHHH
Q 045262          154 PRPCRGSEKDDCEQEVKNLKNMVQMLQD----REKNLE------VELLEYYGLKEQE-------------------TIVM  204 (594)
Q Consensus       154 ~~a~~~~e~~d~e~EI~~LR~lVeeLqE----RE~~LE------~ELLEyy~LKEQE-------------------a~v~  204 (594)
                      +.+.+...+++...|++.+...|++|.+    ||..|-      +.|+|-....+-+                   -.|.
T Consensus       333 ~s~~n~~~~d~~q~eLdK~~~~i~~Ln~~leaReaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva  412 (961)
T KOG4673|consen  333 SSATNVSDSDDVQLELDKTKKEIKMLNNALEAREAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVA  412 (961)
T ss_pred             CCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHH
Confidence            3455566777778888888888877654    555442      2223311111111                   1267


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHH
Q 045262          205 ELQNRLKLNNMEGRLLNLKIESLQAD  230 (594)
Q Consensus       205 ELe~~L~~k~~Ei~~L~~kI~sLE~E  230 (594)
                      .||+-.-+.+-|-|-|++.+.+|..|
T Consensus       413 ~lEkKvqa~~kERDalr~e~kslk~e  438 (961)
T KOG4673|consen  413 TLEKKVQALTKERDALRREQKSLKKE  438 (961)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            77777777777777788887777666

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=94.35  E-value=6.2  Score=39.39  Aligned_cols=20  Identities=30%  Similarity=0.474  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 045262          168 EVKNLKNMVQMLQDREKNLE  187 (594)
Q Consensus       168 EI~~LR~lVeeLqERE~~LE  187 (594)
                      .|..|++.|.+|+.+=..|.
T Consensus        13 ki~~L~n~l~elq~~l~~l~   32 (194)
T PF15619_consen   13 KIKELQNELAELQRKLQELR   32 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            45566666666665544433

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=94.33  E-value=14  Score=43.41  Aligned_cols=205  Identities=18%  Similarity=0.179  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh-hchhhHHHHHHHHHHHHhhhhhhHHHHHHH----HHHHHHHHHHHHHHHH--
Q 045262          168 EVKNLKNMVQMLQDREKNLEVELLEYY-GLKEQETIVMELQNRLKLNNMEGRLLNLKI----ESLQADNRRLEAQVAD--  240 (594)
Q Consensus       168 EI~~LR~lVeeLqERE~~LE~ELLEyy-~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI----~sLE~En~RLq~qv~e--  240 (594)
                      ....|+.+-+.++.+|..|+-++++-- .+++-...+-+|-+.+..+.+|..-|..+.    ..++-+-.-+...+..  
T Consensus       106 ~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~  185 (716)
T KOG4593|consen  106 LLTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLH  185 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466677777888889999999988887 666666667777777777776666665554    3333332222222211  


Q ss_pred             --HHhHHHHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH----
Q 045262          241 --HAKTVSELEAAKTKIKLLKKKLRTE------AEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLE----  308 (594)
Q Consensus       241 --~~~v~~ELE~ar~kir~LqkKl~~~------a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE----  308 (594)
                        .....++|..-..++....+++...      ..+.++|+.-.-++++.....+..-    ..+.-.+|.+.+|+    
T Consensus       186 s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~----~~~~dqlqel~~l~~a~~  261 (716)
T KOG4593|consen  186 SELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLSEELEAIN----KNMKDQLQELEELERALS  261 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence              1122223333333333333333221      1223344444444444442222111    12222333334443    


Q ss_pred             ---HHHH---HHHHHhHHHHHHhhHhHHhhhhhhhhhhcc----hhh-hHH------HHHHHHHHHHHHhhHHHHHHHHH
Q 045262          309 ---AEAE---DLRKSNMKLQLENSQLARRLESTQMLEISV----LED-GER------EALNEMSQRLREENTSLSKEVEK  371 (594)
Q Consensus       309 ---~Ev~---ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~----~E~-~ev------~~i~ee~~~LR~~NedL~kQVEq  371 (594)
                         .|+.   +.++++.-||.|+..|-.||--++......    .++ ...      +.+..+++.+ ++-++++.++.-
T Consensus       262 q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~~~~~-~~~~~~~~~~~~  340 (716)
T KOG4593|consen  262 QLREELATLRENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWERADQEMGSL-RTPEDLMEKLVN  340 (716)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhcc-CCHHHHHHHHHH
Confidence               3444   677888899999999988887777644321    111 111      2223333333 345666666666


Q ss_pred             Hhhhhc
Q 045262          372 LHADKC  377 (594)
Q Consensus       372 Lq~dRf  377 (594)
                      ++..++
T Consensus       341 e~s~~~  346 (716)
T KOG4593|consen  341 EQSRNA  346 (716)
T ss_pred             HHHHHh
Confidence            665544

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=94.29  E-value=10  Score=43.56  Aligned_cols=83  Identities=22%  Similarity=0.271  Sum_probs=51.0

Q ss_pred             HHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHH
Q 045262          203 VMELQNRLKLNNMEGR-LLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLK---KKLRTEAEQNREQILAVQE  278 (594)
Q Consensus       203 v~ELe~~L~~k~~Ei~-~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~Lq---kKl~~~a~q~K~qi~~Lkq  278 (594)
                      .-+++.+|+.+=...- -...+|+.|++.|..|.+++.+..+.-.-++-.|.+.+.||   +|++.-..+.+..-...-+
T Consensus       215 ~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~  294 (581)
T KOG0995|consen  215 SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEK  294 (581)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHH
Confidence            5555566554433332 26677788888888888888866666666666676666666   4455555555555555555


Q ss_pred             HHHHHHH
Q 045262          279 RVTKLQE  285 (594)
Q Consensus       279 ~v~~Lq~  285 (594)
                      .+.+++.
T Consensus       295 ~l~~l~~  301 (581)
T KOG0995|consen  295 KLEMLKS  301 (581)
T ss_pred             HHHHHHH
Confidence            5555553

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=94.26  E-value=2.6  Score=45.68  Aligned_cols=115  Identities=21%  Similarity=0.203  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-
Q 045262          170 KNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSEL-  248 (594)
Q Consensus       170 ~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~EL-  248 (594)
                      +.||..-+.++||....+.=-+---.|+.|-..++++   +.--..++..|.-.|..+.+||.+|+.++.++..-..|- 
T Consensus        85 eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~v---f~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Eke  161 (401)
T PF06785_consen   85 EGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREV---FMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKE  161 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhH
Confidence            4566666777777654433222233444554444442   233456788888999999999999999999998877666 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 045262          249 EAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQA  287 (594)
Q Consensus       249 E~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E  287 (594)
                      |.+..=+|+|-.-+...+.=+-+.-..+-++-+.|..+.
T Consensus       162 eesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ  200 (401)
T PF06785_consen  162 EESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQ  200 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHH
Confidence            566666777766555555545444444445555555544

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.22  E-value=7.7  Score=46.19  Aligned_cols=35  Identities=20%  Similarity=0.415  Sum_probs=23.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhH
Q 045262          295 PDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLA  329 (594)
Q Consensus       295 ~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~  329 (594)
                      -|++.|++.+.-+-+.+.|||....-+|..+++|-
T Consensus       556 kE~esk~~eidi~n~qlkelk~~~~~q~lake~~y  590 (1118)
T KOG1029|consen  556 KETESKLNEIDIFNNQLKELKEDVNSQQLAKEELY  590 (1118)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34666666666677777777777777776666653

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=94.22  E-value=6.6  Score=42.92  Aligned_cols=26  Identities=8%  Similarity=0.179  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045262          169 VKNLKNMVQMLQDREKNLEVELLEYY  194 (594)
Q Consensus       169 I~~LR~lVeeLqERE~~LE~ELLEyy  194 (594)
                      +.-|...+..++.+=...+.+|..|.
T Consensus       163 ~~fl~~ql~~~~~~L~~ae~~l~~f~  188 (498)
T TIGR03007       163 QRFIDEQIKTYEKKLEAAENRLKAFK  188 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555556666553

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=94.22  E-value=16  Score=44.59  Aligned_cols=77  Identities=21%  Similarity=0.224  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhc---hhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 045262          166 EQEVKNLKNMVQMLQDREK-------NLEVELLEYYGL---KEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLE  235 (594)
Q Consensus       166 e~EI~~LR~lVeeLqERE~-------~LE~ELLEyy~L---KEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq  235 (594)
                      .-+++.++..|++|++=-.       -|+.||-.|.-=   -.=|+.|..|+..|.--.++-+....+++.|..||..|+
T Consensus       256 lmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq  335 (1195)
T KOG4643|consen  256 LMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQ  335 (1195)
T ss_pred             hhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            3467778888888877622       234444333211   123577888888888888899999999999999999998


Q ss_pred             HHHHHHH
Q 045262          236 AQVADHA  242 (594)
Q Consensus       236 ~qv~e~~  242 (594)
                      -+-+.+.
T Consensus       336 ~q~eqL~  342 (1195)
T KOG4643|consen  336 VQKEQLD  342 (1195)
T ss_pred             HHHHHhh
Confidence            6665443

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=94.12  E-value=0.75  Score=52.78  Aligned_cols=92  Identities=20%  Similarity=0.419  Sum_probs=57.7

Q ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 045262          211 KLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKA  290 (594)
Q Consensus       211 ~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~  290 (594)
                      .....++..|..+++.|+.||.-|+..+.++.   .+++..++++..+++++....... .++.++..++..|+.+    
T Consensus       418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k---~eie~L~~~l~~~~r~~~~~~~~~-rei~~~~~~I~~L~~~----  489 (652)
T COG2433         418 TVYEKRIKKLEETVERLEEENSELKRELEELK---REIEKLESELERFRREVRDKVRKD-REIRARDRRIERLEKE----  489 (652)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHH----
Confidence            34455677888888888888888888777765   555666677777777776443333 3455666666666544    


Q ss_pred             hcCChhHHHHHHHHHHHHHHHHHHHH
Q 045262          291 AAIDPDTQSRLQRLKVLEAEAEDLRK  316 (594)
Q Consensus       291 ~~~d~E~ekKlq~lkeLE~Ev~ELRr  316 (594)
                            ++.+-.++..|+.+..+|++
T Consensus       490 ------L~e~~~~ve~L~~~l~~l~k  509 (652)
T COG2433         490 ------LEEKKKRVEELERKLAELRK  509 (652)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHH
Confidence                  33334445555555555553

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=93.95  E-value=3.7  Score=48.22  Aligned_cols=83  Identities=18%  Similarity=0.232  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 045262          166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTV  245 (594)
Q Consensus       166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~  245 (594)
                      .++|..+++.+..|++|=.-+|-+|---..+    ..++++|..|.-.+.++-+-..+-...++-.++|..++.+..   
T Consensus       104 da~lrq~eekn~slqerLelaE~~l~qs~ra----e~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~n---  176 (916)
T KOG0249|consen  104 DADLRQNEEKNRSLQERLELAEPKLQQSLRA----ETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELN---  176 (916)
T ss_pred             chhhchhHHhhhhhhHHHHHhhHhhHhHHhh----hhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH---
Confidence            4677788888888888866666665443332    557777888777777777777777777777777776665543   


Q ss_pred             HHHHHHHHHH
Q 045262          246 SELEAAKTKI  255 (594)
Q Consensus       246 ~ELE~ar~ki  255 (594)
                      .||..|+-+.
T Consensus       177 aeL~rarqre  186 (916)
T KOG0249|consen  177 AELQRARQRE  186 (916)
T ss_pred             HHHHHHHHHH
Confidence            4555555443

>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.92  E-value=2.1  Score=48.24  Aligned_cols=110  Identities=19%  Similarity=0.276  Sum_probs=80.3

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 045262          203 VMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTK  282 (594)
Q Consensus       203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~  282 (594)
                      -.+|..+|+....+++..+..|..+.+...+|+   .+++..+..++.+|.|..+|.++|=+.+-         |+.+  
T Consensus       336 F~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq---k~~ad~~~KI~~~k~r~~~Ls~RiLRv~i---------kqei--  401 (508)
T KOG3091|consen  336 FEDLRQRLKVQDQEVKQHRIRINAIGERVTELQ---KHHADAVAKIEEAKNRHVELSHRILRVMI---------KQEI--  401 (508)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH--
Confidence            357999999999999999999999999999999   78888899999999999999988765432         2222  


Q ss_pred             HHHHHHHhhcCChhHHHHHHHHH-HHHHHHHHHHHHhHHHHHHhhH
Q 045262          283 LQEQAHKAAAIDPDTQSRLQRLK-VLEAEAEDLRKSNMKLQLENSQ  327 (594)
Q Consensus       283 Lq~~E~e~~~~d~E~ekKlq~lk-eLE~Ev~ELRr~NkeLQ~EKre  327 (594)
                      +.......-..+.+|..|++.|- .|+.= .||+++...|+..-+-
T Consensus       402 lr~~G~~L~~~EE~Lr~Kldtll~~ln~P-nq~k~Rl~~L~e~~r~  446 (508)
T KOG3091|consen  402 LRKRGYALTPDEEELRAKLDTLLAQLNAP-NQLKARLDELYEILRM  446 (508)
T ss_pred             HhccCCcCCccHHHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHh
Confidence            22222222233356777777653 33333 7888888888776544

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.78  E-value=0.58  Score=45.71  Aligned_cols=50  Identities=34%  Similarity=0.378  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHH
Q 045262          303 RLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKE  368 (594)
Q Consensus       303 ~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQ  368 (594)
                      ++++|+.++.|+.+.+..|+.|---|-+.+..++                +....|..+|.+|.+-
T Consensus       131 ~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e----------------~k~~~l~~En~~Lv~R  180 (194)
T PF08614_consen  131 KIKDLEEELKEKNKANEILQDELQALQLQLNMLE----------------EKLRKLEEENRELVER  180 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHH
Confidence            4788888888888888888888766644443333                3345566667666553

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=93.67  E-value=4.3  Score=47.32  Aligned_cols=114  Identities=22%  Similarity=0.200  Sum_probs=75.6

Q ss_pred             hhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 045262          197 KEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAV  276 (594)
Q Consensus       197 KEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~L  276 (594)
                      .+.+..+..+..+|.....-+........+++.++..|++.+.       .+..++.+++.|+......-++    |..|
T Consensus       178 ~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~-------~~~~~~~~~~~l~~~~~~~~~~----i~~l  246 (670)
T KOG0239|consen  178 LKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLG-------NYADLRRNIKPLEGLESTIKKK----IQAL  246 (670)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-------hhhhHHHhhhhhhhhhhHHHHH----HHHH
Confidence            3445557777777777777777777777778888888887776       4455555666655444433333    7777


Q ss_pred             HHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhh
Q 045262          277 QERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQML  338 (594)
Q Consensus       277 kq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~  338 (594)
                      ++++..|+..                 +..|...+..+.+.+.+.....+.+...|..++..
T Consensus       247 ~~~l~~l~~~-----------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~  291 (670)
T KOG0239|consen  247 QQELEELKAE-----------------LKELNDQVSLLTREVQEALKESNTLQSDLESLEEN  291 (670)
T ss_pred             HHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777654                 55666777777777777777766665555555443

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=93.64  E-value=20  Score=42.76  Aligned_cols=77  Identities=26%  Similarity=0.249  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHH-HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 045262          172 LKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRL-KLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSEL  248 (594)
Q Consensus       172 LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L-~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~EL  248 (594)
                      |+..++.+.++...|+..+-.|-.++-+-..+..++.+. ......++.+...+..++...++|+....+......++
T Consensus       230 l~~e~e~l~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~  307 (908)
T COG0419         230 LEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEEL  307 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455677777777777776666665433333333333333 23344445555555555555555444444443333333

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=93.49  E-value=22  Score=43.59  Aligned_cols=153  Identities=18%  Similarity=0.177  Sum_probs=82.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045262          164 DCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAK  243 (594)
Q Consensus       164 d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~  243 (594)
                      |+..||++||+-|...+++.=-.-.|           ..+...+.+...+...|+.+..+|..++.+...|++...-...
T Consensus       408 d~~~EIerLK~dl~AaReKnGvyise-----------e~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~  476 (1041)
T KOG0243|consen  408 DLYEEIERLKRDLAAAREKNGVYISE-----------ERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLE  476 (1041)
T ss_pred             HHHHHHHHHHHHHHHhHhhCceEech-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            56789999999998888764322221           1122445555566667777777777777777777755543333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 045262          244 TVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQL  323 (594)
Q Consensus       244 v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~  323 (594)
                      +..+|   +.+...|+.+++.-..+-..---.++|-...|..++.-+ ..-...+.+      +..-+.+||+.+..-|.
T Consensus       477 ~~~~l---~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii-~~~~~se~~------l~~~a~~l~~~~~~s~~  546 (1041)
T KOG0243|consen  477 IKELL---KEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEII-SQQEKSEEK------LVDRATKLRRSLEESQD  546 (1041)
T ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence            33222   222223333333222111111111222222233332211 111112222      33348899999999999


Q ss_pred             HhhHhHHhhhhhhh
Q 045262          324 ENSQLARRLESTQM  337 (594)
Q Consensus       324 EKreL~~KL~sAe~  337 (594)
                      ....|..||+....
T Consensus       547 d~s~l~~kld~~~~  560 (1041)
T KOG0243|consen  547 DLSSLFEKLDRKDR  560 (1041)
T ss_pred             HHHHHHHHhhhhhc
Confidence            99999999988765

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.43  E-value=22  Score=42.60  Aligned_cols=162  Identities=20%  Similarity=0.215  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----H--hhhchhhHHH-HHHHHHHHHhhhhhhHH-----HHHHHHHHHHHHHHH
Q 045262          167 QEVKNLKNMVQMLQDREKNLEVELL----E--YYGLKEQETI-VMELQNRLKLNNMEGRL-----LNLKIESLQADNRRL  234 (594)
Q Consensus       167 ~EI~~LR~lVeeLqERE~~LE~ELL----E--yy~LKEQEa~-v~ELe~~L~~k~~Ei~~-----L~~kI~sLE~En~RL  234 (594)
                      .|+++=|..+++=|.||..=..+.-    +  -...+|||-- -.|||++|.. .-||++     -++.|+..|+-.+-|
T Consensus       327 aELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLer-QReiE~qrEEerkkeie~rEaar~El  405 (1118)
T KOG1029|consen  327 AELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLER-QREIERQREEERKKEIERREAAREEL  405 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5888888888887777653222211    1  1223333322 2344444431 112221     122222222222222


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHhhcC------------------
Q 045262          235 EAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQN---REQILAVQERVTKLQEQAHKAAAI------------------  293 (594)
Q Consensus       235 q~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~---K~qi~~Lkq~v~~Lq~~E~e~~~~------------------  293 (594)
                      +        -..++|.-|+++.+|+.+..++.+..   +++...|.+++..|+.+-.....+                  
T Consensus       406 E--------kqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~  477 (1118)
T KOG1029|consen  406 E--------KQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEV  477 (1118)
T ss_pred             H--------HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHh
Confidence            2        22355666777778877777666554   334444455555554432221111                  


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhh
Q 045262          294 DPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQM  337 (594)
Q Consensus       294 d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~  337 (594)
                      +--.+..+-.+..|-.++.|+...+-.|--|+.+|--+|-..+.
T Consensus       478 ~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~  521 (1118)
T KOG1029|consen  478 TKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQS  521 (1118)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence            11222233334445555566666666666677777666655443

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=93.28  E-value=9.5  Score=41.73  Aligned_cols=32  Identities=19%  Similarity=0.297  Sum_probs=26.5

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262          161 EKDDCEQEVKNLKNMVQMLQDREKNLEVELLE  192 (594)
Q Consensus       161 e~~d~e~EI~~LR~lVeeLqERE~~LE~ELLE  192 (594)
                      ++.....++..|+..+..|+.+..+|+.++-.
T Consensus        91 d~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~~  122 (457)
T TIGR01000        91 DNGNEENQKQLLEQQLDNLKDQKKSLDTLKQS  122 (457)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456789999999999999999999888753

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=93.17  E-value=13  Score=39.26  Aligned_cols=38  Identities=24%  Similarity=0.244  Sum_probs=22.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhh
Q 045262          295 PDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRL  332 (594)
Q Consensus       295 ~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL  332 (594)
                      .+++.-.+.+.++..++.++|+...+|+.+...+..++
T Consensus       209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i  246 (325)
T PF08317_consen  209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKI  246 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455566666666666666666666666654443

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=93.17  E-value=11  Score=39.39  Aligned_cols=27  Identities=22%  Similarity=0.231  Sum_probs=17.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262          165 CEQEVKNLKNMVQMLQDREKNLEVELL  191 (594)
Q Consensus       165 ~e~EI~~LR~lVeeLqERE~~LE~ELL  191 (594)
                      ...++..|+..+..|+.+-.+|+.++-
T Consensus        79 ~~~~l~~l~~~~~~l~a~~~~l~~~~~  105 (423)
T TIGR01843        79 VEADAAELESQVLRLEAEVARLRAEAD  105 (423)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            355777777777777766666665443

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=93.16  E-value=24  Score=42.17  Aligned_cols=46  Identities=15%  Similarity=0.081  Sum_probs=26.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhh
Q 045262          295 PDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEI  340 (594)
Q Consensus       295 ~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~  340 (594)
                      .||......+..-+.+|.-|++....|+...++=..+|+.+.....
T Consensus       378 ~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~  423 (775)
T PF10174_consen  378 GEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLS  423 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4555555555556666666666666666655555555555554443

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=93.10  E-value=23  Score=41.91  Aligned_cols=123  Identities=26%  Similarity=0.284  Sum_probs=72.6

Q ss_pred             HhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHH---HHHH
Q 045262          192 EYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTK----IKLLKK---KLRT  264 (594)
Q Consensus       192 Eyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~k----ir~Lqk---Kl~~  264 (594)
                      |-+-|+|.-+.=..|.++|..-..|++-++..+...++||.||.....++....+.+|.-|.+    ||+++-   ++-.
T Consensus        18 Ee~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~   97 (717)
T PF09730_consen   18 EESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQ   97 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            334444444444444555555556777788888888899999888888777777766544433    333331   1112


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhh
Q 045262          265 EAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLEST  335 (594)
Q Consensus       265 ~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sA  335 (594)
                      +...-.++-..|+++|+.|+                     .=-+|++-|+--+++|++|..-|--+|+.|
T Consensus        98 dyselEeENislQKqvs~Lk---------------------~sQvefE~~Khei~rl~Ee~~~l~~qlee~  147 (717)
T PF09730_consen   98 DYSELEEENISLQKQVSVLK---------------------QSQVEFEGLKHEIKRLEEEIELLNSQLEEA  147 (717)
T ss_pred             hhHHHHHHHHHHHHHHHHHH---------------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22233444555555555554                     444666678888888888876664444433

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=93.01  E-value=20  Score=40.86  Aligned_cols=188  Identities=17%  Similarity=0.182  Sum_probs=109.6

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045262          203 VMELQNRLKLNNMEGRLLNLKIESLQADNRR-------LEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILA  275 (594)
Q Consensus       203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~R-------Lq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~  275 (594)
                      +..|+.++..+..||..|...+..|..+..+       ++.+.++--.+-.+|+....++..|.+-|...--.+.+-+..
T Consensus       332 l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~s  411 (622)
T COG5185         332 LEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKS  411 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHH
Confidence            6667777788888888888888888777443       667778888888888888888888887776443333333333


Q ss_pred             HHHHHHHHHHHHHHh---------hcCCh-----------------------------hHHHHHHHH----HHHHHHHHH
Q 045262          276 VQERVTKLQEQAHKA---------AAIDP-----------------------------DTQSRLQRL----KVLEAEAED  313 (594)
Q Consensus       276 Lkq~v~~Lq~~E~e~---------~~~d~-----------------------------E~ekKlq~l----keLE~Ev~E  313 (594)
                      |...|-.+..--..+         ..+|.                             ++.......    =.||.-+-+
T Consensus       412 lek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~~i~eln~~i~~~~~~e~nksi~Lee~i~~  491 (622)
T COG5185         412 LEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKN  491 (622)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHhhcCCCCceeeccccCCccccCchHhHHHHHHHHhHHHHHHHHHHhccceeHHHHhhh
Confidence            333333332211111         11121                             111111111    125666677


Q ss_pred             HHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHh---hhhcchhhHH------H
Q 045262          314 LRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLH---ADKCAGVEEL------V  384 (594)
Q Consensus       314 LRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq---~dRfseVEEL------V  384 (594)
                      +.-...+|+.+.+-+..+|..|-...+-.-+.     ..+|..+.|-+-+.|-+++-+|.   +.-..+.|++      +
T Consensus       492 ~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~-----~e~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~vqs~~i~  566 (622)
T COG5185         492 LKHDINELTQILEKLELELSEANSKFELSKEE-----NERELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQSTEIK  566 (622)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHHHHHHhh
Confidence            77777888888888888888887665422111     12334445555566666666553   2233344444      4


Q ss_pred             HHHHHHHHHHH
Q 045262          385 YLKWINACLRY  395 (594)
Q Consensus       385 YLRWVNACLR~  395 (594)
                      -=+-.|+|-||
T Consensus       567 ld~~~~~~n~~  577 (622)
T COG5185         567 LDELKVDLNRK  577 (622)
T ss_pred             HHHHHHHHHHH
Confidence            44667888765

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.97  E-value=16  Score=43.82  Aligned_cols=46  Identities=22%  Similarity=0.359  Sum_probs=27.5

Q ss_pred             hhhc-hhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 045262          193 YYGL-KEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQV  238 (594)
Q Consensus       193 yy~L-KEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv  238 (594)
                      |||| ++|.+.+..|+.+.+.-+.|.+.|+-++..+.++...|.+|+
T Consensus       662 yK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~  708 (970)
T KOG0946|consen  662 YKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQL  708 (970)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555 566666666666666666666666666655555555444433

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.85  E-value=6.6  Score=46.16  Aligned_cols=88  Identities=20%  Similarity=0.243  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045262          168 EVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSE  247 (594)
Q Consensus       168 EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~E  247 (594)
                      =+.-|-..++.|++           .|- ..|+.+..+++.++..-..+.+....+|..|+.+.+.|++....   +.+.
T Consensus       537 ~l~lL~~a~~vlre-----------eYi-~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~---LaeR  601 (717)
T PF10168_consen  537 CLELLSQATKVLRE-----------EYI-EKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEK---LAER  601 (717)
T ss_pred             HHHHHHHHHHHHHH-----------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence            34555666666654           222 23566788888888888888888888888888888888754443   3356


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhH
Q 045262          248 LEAAKTKIKLLKKKLRTEAEQNR  270 (594)
Q Consensus       248 LE~ar~kir~LqkKl~~~a~q~K  270 (594)
                      ++.|+.+-+.|.+|++.......
T Consensus       602 ~e~a~d~Qe~L~~R~~~vl~~l~  624 (717)
T PF10168_consen  602 YEEAKDKQEKLMKRVDRVLQLLN  624 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            88888888888888776665543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.80  E-value=9.8  Score=45.48  Aligned_cols=78  Identities=18%  Similarity=0.171  Sum_probs=42.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHH--HHhhHHHHHHHHHH
Q 045262          295 PDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRL--REENTSLSKEVEKL  372 (594)
Q Consensus       295 ~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~L--R~~NedL~kQVEqL  372 (594)
                      .++++++.++...-..+.+|.-+++-|-.++.....||..-+.......  -.+++.-|....|  --+++-|.|.|++-
T Consensus       820 eq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~--nli~~ltEk~~sl~~qadse~l~ka~~~~  897 (970)
T KOG0946|consen  820 EQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGN--NLIKELTEKISSLEAQADSETLSKALKTV  897 (970)
T ss_pred             HHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhh--hHHHHHhhhhhhHHHhhcchHHHHHHHHh
Confidence            3455666666666666666666666666666666666665555443221  1222222332222  23466677777776


Q ss_pred             hh
Q 045262          373 HA  374 (594)
Q Consensus       373 q~  374 (594)
                      ++
T Consensus       898 k~  899 (970)
T KOG0946|consen  898 KS  899 (970)
T ss_pred             hc
Confidence            66

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=92.63  E-value=28  Score=41.60  Aligned_cols=20  Identities=35%  Similarity=0.376  Sum_probs=10.4

Q ss_pred             HHHHHHHhhHHHHHHHHHHh
Q 045262          354 MSQRLREENTSLSKEVEKLH  373 (594)
Q Consensus       354 e~~~LR~~NedL~kQVEqLq  373 (594)
                      .....+...+.+.++++.+.
T Consensus       720 ~l~~~~~~~~~~~~~~~~~~  739 (908)
T COG0419         720 ELESRKAELEELKKELEKLE  739 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=92.57  E-value=11  Score=44.53  Aligned_cols=81  Identities=26%  Similarity=0.323  Sum_probs=60.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262          163 DDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHA  242 (594)
Q Consensus       163 ~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~  242 (594)
                      .+.+.+..+||.-+++++.||.+|   |-+|-.|.|--..+...=.-|+-..+|.+-++..|..|++|+.-|..|+.+..
T Consensus        72 ~~~e~~~~~lr~e~ke~K~rE~rl---l~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~  148 (717)
T PF09730_consen   72 EDLELERKRLREEIKEYKFREARL---LQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAA  148 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345778999999999999999998   44555554433333333333445668888899999999999999999999988


Q ss_pred             hHHH
Q 045262          243 KTVS  246 (594)
Q Consensus       243 ~v~~  246 (594)
                      .++.
T Consensus       149 rLk~  152 (717)
T PF09730_consen  149 RLKE  152 (717)
T ss_pred             HHHH
Confidence            7765

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=92.57  E-value=9.8  Score=36.19  Aligned_cols=63  Identities=17%  Similarity=0.218  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 045262          303 RLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHA  374 (594)
Q Consensus       303 ~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~  374 (594)
                      ++.-||.++...-...+.....-++.-++.+..+-         -|..+..+.+.+-.-++.|..++..+++
T Consensus        81 riq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eR---------kv~~le~~~~~~E~k~eel~~k~~~~k~  143 (143)
T PF12718_consen   81 RIQLLEEELEEAEKKLKETTEKLREADVKAEHFER---------KVKALEQERDQWEEKYEELEEKYKEAKK  143 (143)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---------HHHHHHhhHHHHHHHHHHHHHHHHHhcC
Confidence            35557777766666665555555554444333322         2344555666666667777777776653

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=92.56  E-value=42  Score=43.52  Aligned_cols=28  Identities=25%  Similarity=0.009  Sum_probs=20.0

Q ss_pred             HHHHHHHHHhhhhcchhhHHHHHHHHHH
Q 045262          364 SLSKEVEKLHADKCAGVEELVYLKWINA  391 (594)
Q Consensus       364 dL~kQVEqLq~dRfseVEELVYLRWVNA  391 (594)
                      +...-+||+.+.|..+-|+|+-.+-.++
T Consensus      1480 ~~~~~le~~k~e~~~e~e~~~~~~~~~~ 1507 (1822)
T KOG4674|consen 1480 SKSENLEGTKKELESEKEELKQRLTELA 1507 (1822)
T ss_pred             HHHHhHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3446778888888888888877665554

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=92.30  E-value=23  Score=39.94  Aligned_cols=87  Identities=25%  Similarity=0.337  Sum_probs=45.4

Q ss_pred             hhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-HHHH--------------HHHHHHHHHhHHHHHHHHHHHHHH
Q 045262          193 YYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQA-DNRR--------------LEAQVADHAKTVSELEAAKTKIKL  257 (594)
Q Consensus       193 yy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~-En~R--------------Lq~qv~e~~~v~~ELE~ar~kir~  257 (594)
                      ...|+.+......|+..|.....+|..|...+....+ +...              |...-.++..+...|+.++..+..
T Consensus       227 l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~  306 (522)
T PF05701_consen  227 LEELKEELEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASS  306 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666777777777777777777766654443 1111              333334444444444444445455


Q ss_pred             HHHH---HHHHHHHhHHHHHHHHHH
Q 045262          258 LKKK---LRTEAEQNREQILAVQER  279 (594)
Q Consensus       258 LqkK---l~~~a~q~K~qi~~Lkq~  279 (594)
                      |+..   |+.+.++.|..+..++++
T Consensus       307 L~~~vesL~~ELe~~K~el~~lke~  331 (522)
T PF05701_consen  307 LRASVESLRSELEKEKEELERLKER  331 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5533   233444445555444443

Several sequences in this family are described as being myosin heavy chain-like.

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=92.23  E-value=14  Score=37.04  Aligned_cols=31  Identities=26%  Similarity=0.230  Sum_probs=13.6

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 045262          203 VMELQNRLKLNNMEGRLLNLKIESLQADNRR  233 (594)
Q Consensus       203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~R  233 (594)
                      |.+|+|+|.....+++.|...-..|..-..|
T Consensus        14 i~~L~n~l~elq~~l~~l~~ENk~Lk~lq~R   44 (194)
T PF15619_consen   14 IKELQNELAELQRKLQELRKENKTLKQLQKR   44 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444443333

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=92.18  E-value=37  Score=42.02  Aligned_cols=61  Identities=15%  Similarity=0.261  Sum_probs=30.6

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 045262          203 VMELQNRLKLNNMEGRLLNLKIESLQADNRRLEA-QVADHAKTVSELEAAKTKIKLLKKKLR  263 (594)
Q Consensus       203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~-qv~e~~~v~~ELE~ar~kir~LqkKl~  263 (594)
                      ..++..++.....++..++.+|..++......+. .+.+...-+.++..|+..+..|+..+.
T Consensus       308 ~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~  369 (1201)
T PF12128_consen  308 RDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLD  369 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3344455555556666666666666666555442 244444444444444444444443333

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=92.13  E-value=30  Score=40.88  Aligned_cols=169  Identities=19%  Similarity=0.152  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHH-HHHHHHHH---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045262          168 EVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIV-MELQNRLK---LNNMEGRLLNLKIESLQADNRRLEAQVADHAK  243 (594)
Q Consensus       168 EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v-~ELe~~L~---~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~  243 (594)
                      ++..|+.+++..+.=...+++==-.|-.++||-..+ .+|.....   .-..+-...+.++..|..+...|..++.....
T Consensus       438 ~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~  517 (698)
T KOG0978|consen  438 LSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKA  517 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444422333333333444454444432 22222221   12334455566667777777777777776665


Q ss_pred             HHHHHHHHHHH----HHHHHHHHHHHH----------HHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 045262          244 TVSELEAAKTK----IKLLKKKLRTEA----------EQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEA  309 (594)
Q Consensus       244 v~~ELE~ar~k----ir~LqkKl~~~a----------~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~  309 (594)
                      .+.-+..--.+    .+.|+..+....          +..+..+.-+++.+.-||.+-.   +..+.++.=-..+.+++.
T Consensus       518 ~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~e---k~~~~le~i~~~~~e~~~  594 (698)
T KOG0978|consen  518 SVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELE---KSEAKLEQIQEQYAELEL  594 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence            55543322222    222222221111          2223334444444555544322   122233333345678889


Q ss_pred             HHHHHHHHhHHHHHHhhHhHHhhhhhhhhh
Q 045262          310 EAEDLRKSNMKLQLENSQLARRLESTQMLE  339 (594)
Q Consensus       310 Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~  339 (594)
                      ++.-++..+++||.|...|-+||.......
T Consensus       595 ele~~~~k~~rleEE~e~L~~kle~~k~~~  624 (698)
T KOG0978|consen  595 ELEIEKFKRKRLEEELERLKRKLERLKKEE  624 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999999999999999999988776544

>PRK11281 hypothetical protein; Provisional

Probab=92.08  E-value=35  Score=42.40  Aligned_cols=29  Identities=17%  Similarity=0.241  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045262          166 EQEVKNLKNMVQMLQDREKNLEVELLEYY  194 (594)
Q Consensus       166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy  194 (594)
                      .++.+.|+..+....++=.....+|.++.
T Consensus        79 ~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk  107 (1113)
T PRK11281         79 KEETEQLKQQLAQAPAKLRQAQAELEALK  107 (1113)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence            55677777777777666666666666544

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.97  E-value=26  Score=39.70  Aligned_cols=41  Identities=22%  Similarity=0.327  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHH
Q 045262          166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMEL  206 (594)
Q Consensus       166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~EL  206 (594)
                      .+||..|...+++..+=....+..+.+|..|+.-.+-..+.
T Consensus       230 ~ee~eel~eq~eeneel~ae~kqh~v~~~ales~~sq~~e~  270 (521)
T KOG1937|consen  230 EEEVEELTEQNEENEELQAEYKQHLVEYKALESKRSQFEEQ  270 (521)
T ss_pred             chhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            45699999999999887778888888888876665544443

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=91.88  E-value=43  Score=42.14  Aligned_cols=10  Identities=10%  Similarity=0.129  Sum_probs=4.4

Q ss_pred             HHHHHHhhhc
Q 045262          484 FFHKLRKLVR  493 (594)
Q Consensus       484 Li~KLKKw~~  493 (594)
                      .|+.=..||.
T Consensus      1125 ri~~A~~~v~ 1134 (1353)
T TIGR02680      1125 LILAAERQVA 1134 (1353)
T ss_pred             HHHHHHHHHH
Confidence            3444444543

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=91.88  E-value=7.2  Score=38.58  Aligned_cols=68  Identities=22%  Similarity=0.306  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 045262          304 LKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKL  372 (594)
Q Consensus       304 lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqL  372 (594)
                      ..+|+.++.+|...+.+|+.+..+|..+++.++........ .+.+...+|++.|+..|..|..++|++
T Consensus       122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~-~~~k~~~~ei~~lk~~~~ql~~~l~~~  189 (189)
T PF10211_consen  122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQ-EEEKKHQEEIDFLKKQNQQLKAQLEQI  189 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            45788888888888888888888888888888876643211 233556788999999999999999864

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=91.88  E-value=31  Score=40.52  Aligned_cols=38  Identities=26%  Similarity=0.360  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045262          220 LNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKK  260 (594)
Q Consensus       220 L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~Lqk  260 (594)
                      +..++..||-.++.|+=||.-   +.++.++-..||+.|.-
T Consensus       109 yQerLaRLe~dkesL~LQvsv---LteqVeaQgEKIrDLE~  146 (861)
T KOG1899|consen  109 YQERLARLEMDKESLQLQVSV---LTEQVEAQGEKIRDLET  146 (861)
T ss_pred             HHHHHHHHhcchhhheehHHH---HHHHHHHhhhhHHHHHH
Confidence            334444444444444433332   22333444455555543

>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain

Probab=91.74  E-value=12  Score=37.79  Aligned_cols=93  Identities=23%  Similarity=0.302  Sum_probs=57.8

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 045262          203 VMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTK  282 (594)
Q Consensus       203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~  282 (594)
                      +.+.-++|..--.||..|+       ..|+||+++=.++.-+.=-|.-.|.|.|.|-+.-|+-...+   +-.+++.|+.
T Consensus        43 m~evNrrlQ~hl~EIR~LK-------e~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryt---a~vmr~eV~~  112 (195)
T PF10226_consen   43 MKEVNRRLQQHLNEIRGLK-------EVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYT---ASVMRQEVAQ  112 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHH---HHHHHHHHHH
Confidence            5555555555555555554       44555554444444445555567777776665555555444   5567888888


Q ss_pred             HHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045262          283 LQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQ  322 (594)
Q Consensus       283 Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ  322 (594)
                      .+.+                 |++||..-.+|-+-|.+|-
T Consensus       113 Y~~K-----------------L~eLE~kq~~L~rEN~eLK  135 (195)
T PF10226_consen  113 YQQK-----------------LKELEDKQEELIRENLELK  135 (195)
T ss_pred             HHHH-----------------HHHHHHHHHHHHHhHHHHH
Confidence            7744                 8889888888887776653

Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=91.72  E-value=13  Score=35.74  Aligned_cols=156  Identities=19%  Similarity=0.174  Sum_probs=93.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHH---------HHHHHHhhhhhhHHHHHHHH----HHHHHH
Q 045262          165 CEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVME---------LQNRLKLNNMEGRLLNLKIE----SLQADN  231 (594)
Q Consensus       165 ~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~E---------Le~~L~~k~~Ei~~L~~kI~----sLE~En  231 (594)
                      ...+|..+|--.-.|+-.-.+++.+|-..-.|-|--..|-.         |...+..++.|+-.|..++.    .|.--.
T Consensus         4 k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~k   83 (177)
T PF13870_consen    4 KRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVK   83 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35688888888889999999999988887777666555443         44445555556555555442    222233


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCCh--hHHHHHHHHHHHHH
Q 045262          232 RRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDP--DTQSRLQRLKVLEA  309 (594)
Q Consensus       232 ~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~--E~ekKlq~lkeLE~  309 (594)
                      ++|..-..++..+..+|.....    ...+++.+..+.+.+...+......|+.+.......+-  +.......+.+|+.
T Consensus        84 eKl~~~~~~~~~l~~~l~~~~~----~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~  159 (177)
T PF13870_consen   84 EKLHFLSEELERLKQELKDREE----ELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRK  159 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444432222    22444555566677777777777777765422212221  34556677777888


Q ss_pred             HHHHHHHHhHHHHHH
Q 045262          310 EAEDLRKSNMKLQLE  324 (594)
Q Consensus       310 Ev~ELRr~NkeLQ~E  324 (594)
                      .|..|++....|+..
T Consensus       160 ~i~~l~rk~~~l~~~  174 (177)
T PF13870_consen  160 EIKELERKVEILEMR  174 (177)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            888888877777653

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=91.61  E-value=9.6  Score=36.54  Aligned_cols=29  Identities=28%  Similarity=0.350  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhHhHHhh
Q 045262          304 LKVLEAEAEDLRKSNMKLQLENSQLARRL  332 (594)
Q Consensus       304 lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL  332 (594)
                      ++++..++.+++....+++.....|..++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  181 (191)
T PF04156_consen  153 LQDSREEVQELRSQLERLQENLQQLEEKI  181 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555555554443

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=91.60  E-value=21  Score=37.89  Aligned_cols=124  Identities=17%  Similarity=0.149  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 045262          173 KNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAK  252 (594)
Q Consensus       173 R~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar  252 (594)
                      +.+--+++.+-..++-||-||-.      --+|+|.+|..   +++-+.-...-|+++|+||.-++.          +-|
T Consensus        19 k~l~~~ykq~f~~~reEl~EFQe------gSrE~Eaeles---qL~q~etrnrdl~t~nqrl~~E~e----------~~K   79 (333)
T KOG1853|consen   19 KLLHHEYKQHFLQMREELNEFQE------GSREIEAELES---QLDQLETRNRDLETRNQRLTTEQE----------RNK   79 (333)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhh------hhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----------HHH
Confidence            33445667777777777777732      24566666543   444445555567777777764432          222


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhh
Q 045262          253 TKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRL  332 (594)
Q Consensus       253 ~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL  332 (594)
                      .|.       ..-.-|.-+|+-.|...++-+.+.                 ...|-..|.||-++|..|+--||.-+.-|
T Consensus        80 ek~-------e~q~~q~y~q~s~Leddlsqt~ai-----------------keql~kyiReLEQaNDdLErakRati~sl  135 (333)
T KOG1853|consen   80 EKQ-------EDQRVQFYQQESQLEDDLSQTHAI-----------------KEQLRKYIRELEQANDDLERAKRATIYSL  135 (333)
T ss_pred             HHH-------HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHhccHHHHhhhhhhhhH
Confidence            221       111112222222222222222211                 12244456677777888887777666655


Q ss_pred             hhhhhhh
Q 045262          333 ESTQMLE  339 (594)
Q Consensus       333 ~sAe~~~  339 (594)
                      +.-+.+.
T Consensus       136 eDfeqrL  142 (333)
T KOG1853|consen  136 EDFEQRL  142 (333)
T ss_pred             HHHHHHH
Confidence            5555544

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=91.47  E-value=3.4  Score=47.72  Aligned_cols=85  Identities=27%  Similarity=0.326  Sum_probs=59.1

Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhH---HHHHHHHHHHHHHHHHHH
Q 045262          160 SEKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGR---LLNLKIESLQADNRRLEA  236 (594)
Q Consensus       160 ~e~~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~---~L~~kI~sLE~En~RLq~  236 (594)
                      .+-..+..+|..|.++|+.|++.=..|+.++.++.      ..+..|+++|..-.-++.   .-+++|..++.++.+|+-
T Consensus       415 ~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k------~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~  488 (652)
T COG2433         415 REITVYEKRIKKLEETVERLEEENSELKRELEELK------REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEK  488 (652)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            35566788999999999999999999988877665      567777777764444333   234556667777777766


Q ss_pred             HHHHHHhHHHHHHH
Q 045262          237 QVADHAKTVSELEA  250 (594)
Q Consensus       237 qv~e~~~v~~ELE~  250 (594)
                      .+.+-...+++|+.
T Consensus       489 ~L~e~~~~ve~L~~  502 (652)
T COG2433         489 ELEEKKKRVEELER  502 (652)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66666655555553

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=91.40  E-value=16  Score=36.22  Aligned_cols=104  Identities=17%  Similarity=0.155  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhH
Q 045262          218 RLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDT  297 (594)
Q Consensus       218 ~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~  297 (594)
                      --|...+..|++|..|-..-......++++||.++..|..|..-+.+...+-..=-.-|..+=+.++..+.. .......
T Consensus        60 ~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~-~~~y~~~  138 (182)
T PF15035_consen   60 PDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEEN-FNQYLSS  138 (182)
T ss_pred             ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcc
Confidence            345558899999999999888888999999999999999999766655444332111223333445544432 1111111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045262          298 QSRLQRLKVLEAEAEDLRKSNMKLQLE  324 (594)
Q Consensus       298 ekKlq~lkeLE~Ev~ELRr~NkeLQ~E  324 (594)
                      +  -.++=.|=-+|+-+||.-.+|...
T Consensus       139 e--h~rll~LWr~v~~lRr~f~elr~~  163 (182)
T PF15035_consen  139 E--HSRLLSLWREVVALRRQFAELRTA  163 (182)
T ss_pred             c--ccHHHHHHHHHHHHHHHHHHHHHH
Confidence            1  124666778999999988887754

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=91.34  E-value=30  Score=39.29  Aligned_cols=114  Identities=14%  Similarity=0.214  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 045262          202 IVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVT  281 (594)
Q Consensus       202 ~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~  281 (594)
                      .+..|+++|......|..  .++...++.+..+..++..+-.+.+.-..|+..+.....++.....+++++...|+..+.
T Consensus       257 ~i~~l~~~i~~~~~~l~~--l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~  334 (569)
T PRK04778        257 EIQDLKEQIDENLALLEE--LDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEID  334 (569)
T ss_pred             HHHHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444433333322  245566677788888888888888877888999999999999999999999999988888


Q ss_pred             HHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045262          282 KLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLE  324 (594)
Q Consensus       282 ~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~E  324 (594)
                      .++..= .  -++.+    +..++.++.++.+|....+.++..
T Consensus       335 ~l~~sY-~--l~~~e----~~~~~~lekeL~~Le~~~~~~~~~  370 (569)
T PRK04778        335 RVKQSY-T--LNESE----LESVRQLEKQLESLEKQYDEITER  370 (569)
T ss_pred             HHHHcc-c--cCchh----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887540 0  01122    233455555555555555544433

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=91.23  E-value=16  Score=36.52  Aligned_cols=27  Identities=15%  Similarity=0.254  Sum_probs=16.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045262          217 GRLLNLKIESLQADNRRLEAQVADHAK  243 (594)
Q Consensus       217 i~~L~~kI~sLE~En~RLq~qv~e~~~  243 (594)
                      +-.+...|..+.+++..|+.++.+...
T Consensus        22 L~~~~~~l~~~~~~~~~l~~~i~~~l~   48 (302)
T PF10186_consen   22 LLELRSELQQLKEENEELRRRIEEILE   48 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444556666666666666666666554

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=91.22  E-value=15  Score=40.25  Aligned_cols=14  Identities=14%  Similarity=0.102  Sum_probs=5.7

Q ss_pred             hhHH-HHHHHHHHHH
Q 045262           14 VKFG-VAFVFSLAGI   27 (594)
Q Consensus        14 vr~G-~ava~S~A~~   27 (594)
                      .|+. .++++.|+||
T Consensus        20 ~~~~~~~~~~~~~~~   34 (457)
T TIGR01000        20 STLVIVPIFLLLVFL   34 (457)
T ss_pred             chhHHHHHHHHHHHH
Confidence            3444 2344444443

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=90.98  E-value=13  Score=34.44  Aligned_cols=69  Identities=23%  Similarity=0.267  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcc--hhhhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 045262          304 LKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISV--LEDGEREALNEMSQRLREENTSLSKEVEKL  372 (594)
Q Consensus       304 lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~--~E~~ev~~i~ee~~~LR~~NedL~kQVEqL  372 (594)
                      |..|..++.+++.....|+.+.......|+.++..-...  .-..++..+....+-|..-|.=|-.|||-|
T Consensus        61 L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l  131 (132)
T PF07926_consen   61 LQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL  131 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            444555555555555555555555555555555433211  011334455666677777788888887754

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=90.84  E-value=26  Score=37.65  Aligned_cols=32  Identities=3%  Similarity=0.021  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHhhhhcchh
Q 045262          349 EALNEMSQRLREENTSLSKEVEKLHADKCAGV  380 (594)
Q Consensus       349 ~~i~ee~~~LR~~NedL~kQVEqLq~dRfseV  380 (594)
                      ..+..+.+..+.-|+.|...+++.+-......
T Consensus       345 ~~L~r~~~~~~~~y~~ll~r~~e~~l~~~~~~  376 (444)
T TIGR03017       345 SVLQRDVENAQRAYDAAMQRYTQTRIEAQSNQ  376 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            34666778888889999999999887765543

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=90.81  E-value=34  Score=38.84  Aligned_cols=31  Identities=26%  Similarity=0.367  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhHhHHhhhh
Q 045262          304 LKVLEAEAEDLRKSNMKLQLENSQLARRLES  334 (594)
Q Consensus       304 lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~s  334 (594)
                      -..|..++..|...|.++..|-..|+.=|-.
T Consensus       167 ~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkg  197 (475)
T PRK10361        167 RHTLAHEIRNLQQLNAQMAQEAINLTRALKG  197 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3678889999999999999998888776643

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=90.81  E-value=49  Score=40.77  Aligned_cols=149  Identities=23%  Similarity=0.351  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHH----HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262          166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIV----MELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADH  241 (594)
Q Consensus       166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v----~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~  241 (594)
                      ..+|...++-+..+.+-=..|+..=..|..|+.|-...    .-+++++  .+.+--.+-..+..+.++...++.++.+.
T Consensus       683 ~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~--~~~e~~~~~~~~~~~~e~v~e~~~~Ike~  760 (1174)
T KOG0933|consen  683 QKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRL--EQNEFHKLLDDLKELLEEVEESEQQIKEK  760 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcChHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555666666677776665432    2223332  22333445555555556666666666655


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHH
Q 045262          242 AKTVSELEAAKTKIKLLKKKLRTEAEQNRE-QILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMK  320 (594)
Q Consensus       242 ~~v~~ELE~ar~kir~LqkKl~~~a~q~K~-qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~Nke  320 (594)
                      ..+.++-+   .++..|.+.++. +..+++ .+--|...   |+.....+.....+++++.+....|..|+++|.+...-
T Consensus       761 ~~~~k~~~---~~i~~lE~~~~d-~~~~re~rlkdl~ke---ik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~  833 (1174)
T KOG0933|consen  761 ERALKKCE---DKISTLEKKMKD-AKANRERRLKDLEKE---IKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISS  833 (1174)
T ss_pred             HHHHHHHH---HHHHHHHHHHhH-hhhhhHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55554433   233333333321 111111 11111111   11111111122345666666666666666666655444


Q ss_pred             HHH
Q 045262          321 LQL  323 (594)
Q Consensus       321 LQ~  323 (594)
                      ++.
T Consensus       834 ~k~  836 (1174)
T KOG0933|consen  834 LKQ  836 (1174)
T ss_pred             HHH
Confidence            333

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=90.45  E-value=22  Score=36.18  Aligned_cols=165  Identities=17%  Similarity=0.137  Sum_probs=90.9

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 045262          213 NNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAA  292 (594)
Q Consensus       213 k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~  292 (594)
                      |+.||-.|.-.+.-.++|.   -....++..++.+|-.++++++....++..........-.-|..--..|+       .
T Consensus         8 k~GEIsLLKqQLke~q~E~---~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELq-------r   77 (202)
T PF06818_consen    8 KSGEISLLKQQLKESQAEV---NQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQ-------R   77 (202)
T ss_pred             hhhhHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHH-------H
Confidence            4455555555444444442   12233444555555555555555555555433333222222222111222       2


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHh--hhhhhhhh-h----cchhhhHHHHHHHHHHHHHHhhHHH
Q 045262          293 IDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARR--LESTQMLE-I----SVLEDGEREALNEMSQRLREENTSL  365 (594)
Q Consensus       293 ~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~K--L~sAe~~~-~----~~~E~~ev~~i~ee~~~LR~~NedL  365 (594)
                      ...+++.--..+..||.|+.+||.....+...+.+...-  .+.|.+.- +    ...-..+|+.++++....|..+++-
T Consensus        78 ~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q  157 (202)
T PF06818_consen   78 KKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQ  157 (202)
T ss_pred             HhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHH
Confidence            223344444568889999999998888874333333321  12222211 1    1113356788899999999999999


Q ss_pred             HHHHHHHhhhhcchhhHHH-HHH
Q 045262          366 SKEVEKLHADKCAGVEELV-YLK  387 (594)
Q Consensus       366 ~kQVEqLq~dRfseVEELV-YLR  387 (594)
                      ....|+=+.-|..+-|=+| |.+
T Consensus       158 ~~~Fe~ER~~W~eEKekVi~YQk  180 (202)
T PF06818_consen  158 RSSFEQERRTWQEEKEKVIRYQK  180 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988888888877643 555

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PLN02939 transferase, transferring glycosyl groups

Probab=90.06  E-value=24  Score=43.18  Aligned_cols=156  Identities=21%  Similarity=0.277  Sum_probs=99.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhh-----------HHHHHHHHHHHHhhh--------hhhHHHHHHHH
Q 045262          165 CEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQ-----------ETIVMELQNRLKLNN--------MEGRLLNLKIE  225 (594)
Q Consensus       165 ~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQ-----------Ea~v~ELe~~L~~k~--------~Ei~~L~~kI~  225 (594)
                      ...|+.-||.-=-.|++--.-|..+|.+.....|-           ++.+.+||..+.+..        .+++.+-.+++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (977)
T PLN02939        224 LSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVE  303 (977)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHH
Confidence            45677777776666777667777777666554443           345677777665433        34466777777


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-H-HHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHH
Q 045262          226 SLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTE-A-EQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQR  303 (594)
Q Consensus       226 sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~-a-~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~  303 (594)
                      .||.=..+...|+.....+..+-...+.|+..|..-+..- . +-.-..+..++|+|..++..   ..+.|+|+..-.  
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--  378 (977)
T PLN02939        304 NLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEER---LQASDHEIHSYI--  378 (977)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHH---HHhhHHHHHHHH--
Confidence            7877777777777777777666666666666555444311 1 11123456777888777654   235566666553  


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhh
Q 045262          304 LKVLEAEAEDLRKSNMKLQLENS  326 (594)
Q Consensus       304 lkeLE~Ev~ELRr~NkeLQ~EKr  326 (594)
                       +--..++.|++.+.+.|-.|..
T Consensus       379 -~~~~~~~~~~~~~~~~~~~~~~  400 (977)
T PLN02939        379 -QLYQESIKEFQDTLSKLKEESK  400 (977)
T ss_pred             -HHHHHHHHHHHHHHHHHHhhhh
Confidence             4467888999999888877653

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=90.06  E-value=36  Score=38.91  Aligned_cols=56  Identities=21%  Similarity=0.329  Sum_probs=44.5

Q ss_pred             HHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045262          205 ELQNRLKLN-NMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKK  260 (594)
Q Consensus       205 ELe~~L~~k-~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~Lqk  260 (594)
                      .+|.+|++- +..+--+...|+.|.++|.+|.+++.+..++-.-++..+.|-|+|+.
T Consensus       253 ~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~  309 (622)
T COG5185         253 PSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKS  309 (622)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344555533 23345588899999999999999999999999999988888888884

>PRK12704 phosphodiesterase; Provisional

Probab=89.75  E-value=41  Score=38.24  Aligned_cols=17  Identities=35%  Similarity=0.268  Sum_probs=9.2

Q ss_pred             CCcccchhhhhhcccccc
Q 045262          563 NSDLVSSDAYKRFSLSRE  580 (594)
Q Consensus       563 ~~~~g~~~~~k~~~~~~~  580 (594)
                      ++..|+.++|- +-.|||
T Consensus       453 ~~~~gv~~~ya-iqaGre  469 (520)
T PRK12704        453 NSFEGVEKAYA-IQAGRE  469 (520)
T ss_pred             HhCCcHHHHHH-HhcCce
Confidence            34557777775 334443

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=89.69  E-value=33  Score=36.97  Aligned_cols=80  Identities=16%  Similarity=0.235  Sum_probs=55.2

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hchhhHHH-HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 045262          163 DDCEQEVKNLKNMVQMLQDREKNLEVELLEYY----GLKEQETI-VMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQ  237 (594)
Q Consensus       163 ~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy----~LKEQEa~-v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~q  237 (594)
                      ...---++.|++.++.|++--..|..+.-...    ...|+|.. |.+-=++|...+++|..|...++.--+++.+.+++
T Consensus       156 ~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEE  235 (306)
T PF04849_consen  156 SQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEE  235 (306)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            33445689999999999988777777665544    44444443 33344677777888888888777777777777776


Q ss_pred             HHHHH
Q 045262          238 VADHA  242 (594)
Q Consensus       238 v~e~~  242 (594)
                      |..+.
T Consensus       236 It~Ll  240 (306)
T PF04849_consen  236 ITSLL  240 (306)
T ss_pred             HHHHH
Confidence            66554

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=89.42  E-value=25  Score=42.06  Aligned_cols=150  Identities=23%  Similarity=0.299  Sum_probs=73.2

Q ss_pred             hHHHHHHHHHHH----HHHHHHHHHHHHH-----HHHhhhchhhHHHHHHHHHHHHhhhhhh-------HHHHHHHHHHH
Q 045262          165 CEQEVKNLKNMV----QMLQDREKNLEVE-----LLEYYGLKEQETIVMELQNRLKLNNMEG-------RLLNLKIESLQ  228 (594)
Q Consensus       165 ~e~EI~~LR~lV----eeLqERE~~LE~E-----LLEyy~LKEQEa~v~ELe~~L~~k~~Ei-------~~L~~kI~sLE  228 (594)
                      +..|...||+.+    +.|+|+|..-+.-     -+|...|+   +.-+-|+++|..-....       +.|-+.|+++.
T Consensus       392 lrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLq---SlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~  468 (861)
T PF15254_consen  392 LRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQ---SLNMSLQNQLQESLKSQELLQSKNEELLKVIENQK  468 (861)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHH---HHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Confidence            345666666555    4566666654111     12222221   22445555555433333       34557788888


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 045262          229 ADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLE  308 (594)
Q Consensus       229 ~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE  308 (594)
                      .||+||...+.+-..-..+   -|.....=--+|+.+.+++..+.-.+|=++..-+.+ ..+         =.-.|+-=+
T Consensus       469 ~Enk~~~~~~~ekd~~l~~---~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekE-N~i---------L~itlrQrD  535 (861)
T PF15254_consen  469 EENKRLRKMFQEKDQELLE---NKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKE-NQI---------LGITLRQRD  535 (861)
T ss_pred             HHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhh-hhH---------hhhHHHHHH
Confidence            8898888776554322111   111111111233333444433333333222221111 111         112245557


Q ss_pred             HHHHHHHHHhHHHHHHhhHhHH
Q 045262          309 AEAEDLRKSNMKLQLENSQLAR  330 (594)
Q Consensus       309 ~Ev~ELRr~NkeLQ~EKreL~~  330 (594)
                      .||.-||-.+..||.-...|..
T Consensus       536 aEi~RL~eLtR~LQ~Sma~lL~  557 (861)
T PF15254_consen  536 AEIERLRELTRTLQNSMAKLLS  557 (861)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            8888899999999988777755

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=89.38  E-value=1.1  Score=39.46  Aligned_cols=74  Identities=23%  Similarity=0.292  Sum_probs=56.5

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhh------------hhhhHHHHHHHHHHHH
Q 045262          162 KDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLN------------NMEGRLLNLKIESLQA  229 (594)
Q Consensus       162 ~~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k------------~~Ei~~L~~kI~sLE~  229 (594)
                      ......||..|+..+..|+..-..|.++=|+-+.+    ..+..||.+|...            ..+|+.|..++..|+.
T Consensus        14 ~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~----~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~   89 (100)
T PF01486_consen   14 HEELQQEIAKLRKENESLQKELRHLMGEDLESLSL----KELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEE   89 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccccccch----HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456799999999999999999999998888887    5577777777633            3466677777777777


Q ss_pred             HHHHHHHHHH
Q 045262          230 DNRRLEAQVA  239 (594)
Q Consensus       230 En~RLq~qv~  239 (594)
                      +|..|+.+++
T Consensus        90 en~~L~~~~~   99 (100)
T PF01486_consen   90 ENNQLRQKIE   99 (100)
T ss_pred             HHHHHHHHhc
Confidence            7777776664

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=89.37  E-value=56  Score=39.19  Aligned_cols=161  Identities=18%  Similarity=0.268  Sum_probs=86.1

Q ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHH
Q 045262          211 KLNNMEGRLLNLKIESLQADNRRLEAQVADH----AKTVSELEAAKTKIKLLKKKLRTEAEQNREQI-LAVQERVTKLQE  285 (594)
Q Consensus       211 ~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~----~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi-~~Lkq~v~~Lq~  285 (594)
                      .........+..+++.|+++...|...+..+    -....+|..+..++..|+.++.. ++.++..+ ..|+.+....+.
T Consensus       585 ea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~-~keS~s~~E~ql~~~~e~~e~  663 (769)
T PF05911_consen  585 EADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELES-AKESNSLAETQLKAMKESYES  663 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            3455666677778888888887777655443    23333555555555666655552 22222211 122222222221


Q ss_pred             HHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhc----------chhhhHHHHHHHHH
Q 045262          286 QAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEIS----------VLEDGEREALNEMS  355 (594)
Q Consensus       286 ~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~----------~~E~~ev~~i~ee~  355 (594)
                      -+.....-..|+..-...+..||.|+..=|....++--.-++|-.+|+........          ..+.++.+++..-+
T Consensus       664 le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLA  743 (769)
T PF05911_consen  664 LETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLA  743 (769)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHH
Confidence            11111111245555566778888888888888887777777777777776543211          12333443332222


Q ss_pred             HHHHHhhHHHHHHHHHHh
Q 045262          356 QRLREENTSLSKEVEKLH  373 (594)
Q Consensus       356 ~~LR~~NedL~kQVEqLq  373 (594)
                      . =.++---|-||+-.|.
T Consensus       744 E-CQeTI~sLGkQLksLa  760 (769)
T PF05911_consen  744 E-CQETIASLGKQLKSLA  760 (769)
T ss_pred             H-HHHHHHHHHHHHHhcC
Confidence            2 2355667777776665

The function of this family is unknown.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=89.25  E-value=4.7  Score=39.51  Aligned_cols=19  Identities=37%  Similarity=0.431  Sum_probs=12.6

Q ss_pred             HHHHhHHHHHHhhHhHHhh
Q 045262          314 LRKSNMKLQLENSQLARRL  332 (594)
Q Consensus       314 LRr~NkeLQ~EKreL~~KL  332 (594)
                      +...+..|+.||.+|+.|+
T Consensus       163 ~e~k~~~l~~En~~Lv~Rw  181 (194)
T PF08614_consen  163 LEEKLRKLEEENRELVERW  181 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4445566777888887664

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=89.18  E-value=6  Score=41.96  Aligned_cols=29  Identities=21%  Similarity=0.274  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045262          221 NLKIESLQADNRRLEAQVADHAKTVSELE  249 (594)
Q Consensus       221 ~~kI~sLE~En~RLq~qv~e~~~v~~ELE  249 (594)
                      ..-++.|+.+...++.+...|....+++.
T Consensus         8 ~~l~~~l~~~~~~~~~E~~~Y~~fL~~l~   36 (314)
T PF04111_consen    8 DLLLEQLDKQLEQAEKERDTYQEFLKKLE   36 (314)
T ss_dssp             -----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444544444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=89.16  E-value=26  Score=35.11  Aligned_cols=27  Identities=19%  Similarity=0.340  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045262          168 EVKNLKNMVQMLQDREKNLEVELLEYY  194 (594)
Q Consensus       168 EI~~LR~lVeeLqERE~~LE~ELLEyy  194 (594)
                      -|..++..+..++..-..|..++-+..
T Consensus        21 ~L~~~~~~l~~~~~~~~~l~~~i~~~l   47 (302)
T PF10186_consen   21 RLLELRSELQQLKEENEELRRRIEEIL   47 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            366666666666666666666555543

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>TIGR00634 recN DNA repair protein RecN

Probab=89.15  E-value=45  Score=37.80  Aligned_cols=80  Identities=15%  Similarity=0.145  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchh-hhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhcchhhH
Q 045262          304 LKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLE-DGEREALNEMSQRLREENTSLSKEVEKLHADKCAGVEE  382 (594)
Q Consensus       304 lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E-~~ev~~i~ee~~~LR~~NedL~kQVEqLq~dRfseVEE  382 (594)
                      +.+++..+..+++.....-....++...++..+.......+ ...++.+.++...++....+++.++=+.+..-+...++
T Consensus       303 L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~  382 (563)
T TIGR00634       303 LNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAK  382 (563)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555544444334445555555555554443222 23456777888888888888888887777766655544


Q ss_pred             H
Q 045262          383 L  383 (594)
Q Consensus       383 L  383 (594)
                      .
T Consensus       383 ~  383 (563)
T TIGR00634       383 R  383 (563)
T ss_pred             H
Confidence            3

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.08  E-value=51  Score=38.40  Aligned_cols=173  Identities=23%  Similarity=0.304  Sum_probs=104.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045262          164 DCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAK  243 (594)
Q Consensus       164 d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~  243 (594)
                      +.+.+=.+||.-+++++.||.||   |-+|-.|.|--..+...=.-|.-..+|.+-|+-.|..|++|..=|-.|+.+...
T Consensus       146 ~~E~qR~rlr~elKe~KfRE~Rl---lseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~  222 (772)
T KOG0999|consen  146 AVEDQRRRLRDELKEYKFREARL---LSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIR  222 (772)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34667788999999999999998   567777766555555555566677889999999999999998888888777665


Q ss_pred             HHH----HHHHHHHHH---HHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH-HHHHhhc--CChh------------HHH
Q 045262          244 TVS----ELEAAKTKI---KLLKKKLRTEAEQN--REQILAVQERVTKLQE-QAHKAAA--IDPD------------TQS  299 (594)
Q Consensus       244 v~~----ELE~ar~ki---r~LqkKl~~~a~q~--K~qi~~Lkq~v~~Lq~-~E~e~~~--~d~E------------~ek  299 (594)
                      +++    +||.|=.-+   |+-+.-++++..|.  .+.|-.+-...-+|.. ..++++.  +|++            +-+
T Consensus       223 Lk~IAekQlEEALeTlq~EReqk~alkkEL~q~~n~e~~~~~n~l~~sldgk~~eDga~pn~d~e~eh~~l~kl~~Dl~t  302 (772)
T KOG0999|consen  223 LKEIAEKQLEEALETLQQEREQKNALKKELSQYRNAEDISSLNHLLFSLDGKFGEDGAEPNNDPEEEHGALKKLASDLFT  302 (772)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcchhhhhhhhhhheecccccccccCCCCCChhhhcchhhhccchhhh
Confidence            543    554442211   11222233333332  2233333333333332 1112221  2222            001


Q ss_pred             HHH------HHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhh
Q 045262          300 RLQ------RLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLE  339 (594)
Q Consensus       300 Klq------~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~  339 (594)
                      -++      -......|+.-|+...+..+-+|-+|+--|..++.+.
T Consensus       303 el~~p~sDl~sel~iseiqkLkqqL~smErek~~l~anL~dtqt~l  348 (772)
T KOG0999|consen  303 ELQGPVSDLFSELNISEIQKLKQQLMSMEREKAELLANLQDTQTQL  348 (772)
T ss_pred             hccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Confidence            111      1233456777777788888888888888888887655

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=88.97  E-value=50  Score=38.08  Aligned_cols=28  Identities=14%  Similarity=0.251  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHhHHHHHHhhHhHHhhhhh
Q 045262          308 EAEAEDLRKSNMKLQLENSQLARRLEST  335 (594)
Q Consensus       308 E~Ev~ELRr~NkeLQ~EKreL~~KL~sA  335 (594)
                      -..+.+++.....++.|..++..+|..+
T Consensus       390 ~~~~~~~~~~~~~~e~el~~l~~~l~~~  417 (650)
T TIGR03185       390 QDAKSQLLKELRELEEELAEVDKKISTI  417 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3456677777777777777777777665

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]

Probab=88.79  E-value=1.6  Score=44.66  Aligned_cols=65  Identities=25%  Similarity=0.315  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 045262          307 LEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKL  372 (594)
Q Consensus       307 LE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqL  372 (594)
                      ++.++..|.-.+++|.....++..|+++++.......+ .+..++.+++..|+.+|..|..|+|+.
T Consensus       190 ~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~-ieEkk~~eei~fLk~tN~qLKaQLegI  254 (259)
T KOG4001|consen  190 ATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEERE-IEEKKMKEEIEFLKETNRQLKAQLEGI  254 (259)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            56667777777888888888889999999987653222 233678999999999999999999985

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=88.78  E-value=31  Score=35.46  Aligned_cols=72  Identities=21%  Similarity=0.207  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhch-hhHH-HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262          170 KNLKNMVQMLQDREKNLEVELLEYYGLK-EQET-IVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADH  241 (594)
Q Consensus       170 ~~LR~lVeeLqERE~~LE~ELLEyy~LK-EQEa-~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~  241 (594)
                      ..--..|+.|+..=..|+.++-.+.+=+ .+.+ .-.-.+.+|..-...|+.+......|+.+...|..++.++
T Consensus        14 a~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~   87 (312)
T PF00038_consen   14 ASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDL   87 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHH
Confidence            3344678889999999999999888873 2222 2333444444444445555555555555544444444443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=88.71  E-value=19  Score=36.92  Aligned_cols=71  Identities=28%  Similarity=0.307  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhcchhhHH
Q 045262          304 LKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHADKCAGVEEL  383 (594)
Q Consensus       304 lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~dRfseVEEL  383 (594)
                      ..+++.+...|+......+.++..|..++..++..+..         +.++....-.+.+.|..+++..|.+.-.-.++|
T Consensus        56 ~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~---------l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L  126 (246)
T PF00769_consen   56 RQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIAR---------LEEESERKEEEAEELQEELEEAREDEEEAKEEL  126 (246)
T ss_dssp             HHHHHHHHHHHHH------------HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678888888888888888888888887777766542         222333333344555555555555444444444

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=88.57  E-value=40  Score=38.33  Aligned_cols=16  Identities=25%  Similarity=0.179  Sum_probs=8.2

Q ss_pred             Ccccchhhhhhcccccc
Q 045262          564 SDLVSSDAYKRFSLSRE  580 (594)
Q Consensus       564 ~~~g~~~~~k~~~~~~~  580 (594)
                      +--|+.++|- +-.|||
T Consensus       448 ~~~gv~~~~a-iqaGre  463 (514)
T TIGR03319       448 SFEGVEKSYA-IQAGRE  463 (514)
T ss_pred             hCCCchhhhh-hhcCcE
Confidence            3446766664 234443

>TIGR00634 recN DNA repair protein RecN

Probab=88.52  E-value=31  Score=39.03  Aligned_cols=96  Identities=16%  Similarity=0.215  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHH-------HhhcCChhHHHHHHHHHHHHHHHHH
Q 045262          244 TVSELEAAKTKIKLLKKKLRTEAEQ---NREQILAVQERVTKLQEQAH-------KAAAIDPDTQSRLQRLKVLEAEAED  313 (594)
Q Consensus       244 v~~ELE~ar~kir~LqkKl~~~a~q---~K~qi~~Lkq~v~~Lq~~E~-------e~~~~d~E~ekKlq~lkeLE~Ev~E  313 (594)
                      +...|+.+...+.++...++.....   .-+.+..+..++..++.-..       +....-.++++++..+...+.++.+
T Consensus       271 ~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~  350 (563)
T TIGR00634       271 LAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEA  350 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            3334444444555555444443322   23455666666666655321       1122234455556666666666666


Q ss_pred             HHHHhHHHHHHhhHhHHhhhhhhhhh
Q 045262          314 LRKSNMKLQLENSQLARRLESTQMLE  339 (594)
Q Consensus       314 LRr~NkeLQ~EKreL~~KL~sAe~~~  339 (594)
                      |+....+++.+-.+++.+|..+...+
T Consensus       351 L~~el~~l~~~l~~~a~~Ls~~R~~~  376 (563)
T TIGR00634       351 LEEEVDKLEEELDKAAVALSLIRRKA  376 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666655554444

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=88.48  E-value=80  Score=39.89  Aligned_cols=30  Identities=17%  Similarity=0.297  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045262          167 QEVKNLKNMVQMLQDREKNLEVELLEYYGL  196 (594)
Q Consensus       167 ~EI~~LR~lVeeLqERE~~LE~ELLEyy~L  196 (594)
                      ..++.++..++.|+++-..|+.=+-.|...
T Consensus       230 ~~~~~~~~~le~l~~~~~~l~~i~~~y~~y  259 (1353)
T TIGR02680       230 EQLDEYRDELERLEALERALRNFLQRYRRY  259 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            446667777777777777666555555444

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=88.36  E-value=24  Score=33.80  Aligned_cols=41  Identities=22%  Similarity=0.287  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262          202 IVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHA  242 (594)
Q Consensus       202 ~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~  242 (594)
                      .+.+++++|..-..|++.+...+..++.+...++.......
T Consensus        82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~  122 (191)
T PF04156_consen   82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR  122 (191)
T ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            34455555555555666666666666666555554444444

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=88.17  E-value=17  Score=39.58  Aligned_cols=147  Identities=18%  Similarity=0.202  Sum_probs=91.6

Q ss_pred             CchHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-HHHHHHHH
Q 045262          163 DDCEQEVKNLKNMVQ---MLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQAD-NRRLEAQV  238 (594)
Q Consensus       163 ~d~e~EI~~LR~lVe---eLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~E-n~RLq~qv  238 (594)
                      ++-..|++++--.++   .--.+.+|...+-+.-+. +.=+..+++...+|..-..+|..--.+|.+-|.- |..|+..+
T Consensus       194 ~eWklEvERV~PqLKv~~~~d~kDWR~hleqm~~~~-~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~  272 (359)
T PF10498_consen  194 AEWKLEVERVLPQLKVTIRADAKDWRSHLEQMKQHK-KSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLI  272 (359)
T ss_pred             HHHHHHHHHHhhhheeeccCCcchHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            334556666544332   122356666555544332 1223446777777777777787777788877766 77899999


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHH
Q 045262          239 ADHAKTVSELEAAKTKIKLLKKKLRTEAEQN---REQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDL  314 (594)
Q Consensus       239 ~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~---K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~EL  314 (594)
                      .+|..+..+|..++.+.+.+..-+....+.-   .+++..+|+++   +.++.......+=+..| +++..|..|+.+|
T Consensus       273 ~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~em---eerg~~mtD~sPlv~IK-qAl~kLk~EI~qM  347 (359)
T PF10498_consen  273 QEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEM---EERGSSMTDGSPLVKIK-QALTKLKQEIKQM  347 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCCCCCCHHHHHH-HHHHHHHHHHHHh
Confidence            9999999999999999999987776555433   34444444443   33433333333333333 5666676666655

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=88.13  E-value=10  Score=40.26  Aligned_cols=35  Identities=11%  Similarity=0.162  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhh
Q 045262          303 RLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQM  337 (594)
Q Consensus       303 ~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~  337 (594)
                      ....+..+..++......|..+......+|+..+.
T Consensus       100 ~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k  134 (314)
T PF04111_consen  100 EYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK  134 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455555555555555555555555555554443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=87.88  E-value=82  Score=39.30  Aligned_cols=52  Identities=12%  Similarity=0.087  Sum_probs=24.1

Q ss_pred             HHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 045262          320 KLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLH  373 (594)
Q Consensus       320 eLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq  373 (594)
                      ++...|++|+.+|...-...+.....  -..++...+.++++...+-.|++=|+
T Consensus       262 ~~~~~N~~Ls~~L~~~t~~~n~l~~~--~~~~~~~l~~~~q~~~~i~eQi~~l~  313 (1109)
T PRK10929        262 AQFKINRELSQALNQQAQRMDLIASQ--QRQAASQTLQVRQALNTLREQSQWLG  313 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33345677777666665555432211  11223334445555444444444333

>PRK10884 SH3 domain-containing protein; Provisional

Probab=87.73  E-value=6.1  Score=39.83  Aligned_cols=21  Identities=14%  Similarity=0.385  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 045262          220 LNLKIESLQADNRRLEAQVAD  240 (594)
Q Consensus       220 L~~kI~sLE~En~RLq~qv~e  240 (594)
                      +...+..||.|.+.|++++++
T Consensus        91 ~~~rlp~le~el~~l~~~l~~  111 (206)
T PRK10884         91 LRTRVPDLENQVKTLTDKLNN  111 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555544444

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=87.70  E-value=61  Score=37.64  Aligned_cols=91  Identities=16%  Similarity=0.039  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhh---------hHHHHHHHHHHHHHHhhHHHHHHHH
Q 045262          300 RLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLED---------GEREALNEMSQRLREENTSLSKEVE  370 (594)
Q Consensus       300 Klq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~---------~ev~~i~ee~~~LR~~NedL~kQVE  370 (594)
                      +....--|+.-+-++--...+++...+.+-.+|..|+....-..+.         .+.+.+.++...+...-..-.++.+
T Consensus       437 ~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~a~  516 (581)
T KOG0995|consen  437 AENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMKEAE  516 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444555666666666667777777777777777655422111         1122222333222222222222222


Q ss_pred             HHhhhhcchhhHHHHHHHHHHHHHH
Q 045262          371 KLHADKCAGVEELVYLKWINACLRY  395 (594)
Q Consensus       371 qLq~dRfseVEELVYLRWVNACLR~  395 (594)
                      ++     -.-=|+.|-|-+++|=+|
T Consensus       517 ~~-----v~s~e~el~~~~~~~~ee  536 (581)
T KOG0995|consen  517 EL-----VKSIELELDRMVATGEEE  536 (581)
T ss_pred             HH-----HHHHHHHHHHHHHHHHHH
Confidence            22     223478899999999765

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=87.57  E-value=41  Score=35.45  Aligned_cols=135  Identities=20%  Similarity=0.250  Sum_probs=74.3

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHH------HhHH-HHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q 045262          239 ADHAKTVSELEAAKTKIKLLKKKLRTEAE------QNRE-QILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEA  311 (594)
Q Consensus       239 ~e~~~v~~ELE~ar~kir~LqkKl~~~a~------q~K~-qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev  311 (594)
                      .....+..|++...++|...++.+....-      ..|. ||..|..++..+........   .++...++         
T Consensus        81 ~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEl---del~e~~~---------  148 (258)
T PF15397_consen   81 SKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDEL---DELNEMRQ---------  148 (258)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---------
Confidence            34455566677777777777777765542      1244 78888888877776543211   11111111         


Q ss_pred             HHHHHHhHHHHHHhhHhHHhhhhhhhhh--hcc----hhh----hHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhcchhh
Q 045262          312 EDLRKSNMKLQLENSQLARRLESTQMLE--ISV----LED----GEREALNEMSQRLREENTSLSKEVEKLHADKCAGVE  381 (594)
Q Consensus       312 ~ELRr~NkeLQ~EKreL~~KL~sAe~~~--~~~----~E~----~ev~~i~ee~~~LR~~NedL~kQVEqLq~dRfseVE  381 (594)
                      .+|-..-...|..++++...+...-..+  .++    .++    .+...-+++++.|.+....|-.+|++|+.++. +|-
T Consensus       149 ~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~-~~R  227 (258)
T PF15397_consen  149 MELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQ-DPR  227 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chH
Confidence            1222223344555555433322111110  000    122    11233467778888888888889999999988 888


Q ss_pred             HHHHH
Q 045262          382 ELVYL  386 (594)
Q Consensus       382 ELVYL  386 (594)
                      |.||-
T Consensus       228 e~iF~  232 (258)
T PF15397_consen  228 EVIFA  232 (258)
T ss_pred             HHhhH
Confidence            88874

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=87.48  E-value=20  Score=44.62  Aligned_cols=25  Identities=28%  Similarity=0.368  Sum_probs=10.5

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHH
Q 045262          260 KKLRTEAEQNREQILAVQERVTKLQ  284 (594)
Q Consensus       260 kKl~~~a~q~K~qi~~Lkq~v~~Lq  284 (594)
                      +.+.+.+.-++++.+..+|.+..||
T Consensus      1643 ~~a~~~a~sa~~~A~~a~q~~~~lq 1667 (1758)
T KOG0994|consen 1643 KQAEKTAGSAKEQALSAEQGLEILQ 1667 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444333

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=87.43  E-value=35  Score=34.59  Aligned_cols=24  Identities=29%  Similarity=0.261  Sum_probs=12.4

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHH
Q 045262          238 VADHAKTVSELEAAKTKIKLLKKK  261 (594)
Q Consensus       238 v~e~~~v~~ELE~ar~kir~LqkK  261 (594)
                      +-.+-.+.+||+-+|.-++.|+-+
T Consensus        59 l~~aK~l~eEledLk~~~~~lEE~   82 (193)
T PF14662_consen   59 LQKAKALEEELEDLKTLAKSLEEE   82 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444455566666555555533

>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants

Probab=87.36  E-value=9.1  Score=41.41  Aligned_cols=61  Identities=20%  Similarity=0.249  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045262          220 LNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQ  286 (594)
Q Consensus       220 L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~  286 (594)
                      |...-..|+.+..++.+|+.++...+.++|      ..|-+|+-...+.=|++|+.|++.+..++..
T Consensus       149 L~~enerL~~e~~~~~~qlE~~v~~K~~~E------~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~~  209 (342)
T PF06632_consen  149 LQKENERLESEANKLLKQLEKFVNAKEEHE------EDLYAKFVLVLNEKKAKIRELQRLLASAKEE  209 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhHHHHHHHHHHHHHHhhcc
Confidence            344444556666666666666666666666      5688888888888899999998888887754

XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=87.17  E-value=42  Score=35.18  Aligned_cols=26  Identities=15%  Similarity=0.245  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045262          168 EVKNLKNMVQMLQDREKNLEVELLEY  193 (594)
Q Consensus       168 EI~~LR~lVeeLqERE~~LE~ELLEy  193 (594)
                      +-..+..-+..|+.+=.+|+.++..+
T Consensus        75 d~~~~~~~l~~l~~~~~~l~a~~~~l  100 (423)
T TIGR01843        75 DATDVEADAAELESQVLRLEAEVARL  100 (423)
T ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHH
Confidence            33456667777777777777777544

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=87.13  E-value=19  Score=41.29  Aligned_cols=102  Identities=21%  Similarity=0.214  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--hhhHHHH----HH--HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 045262          167 QEVKNLKNMVQMLQDREKNLEVELLEYYGL--KEQETIV----ME--LQNRLKLNNMEGRLLNLKIESLQADNRRLEAQV  238 (594)
Q Consensus       167 ~EI~~LR~lVeeLqERE~~LE~ELLEyy~L--KEQEa~v----~E--Le~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv  238 (594)
                      +-+++-+..|-.|+ -|.....+||..|.-  .|.++..    +-  =+..-.....-.+.|..++..+++||.+|+..+
T Consensus       104 Eqv~~~~d~vvql~-hels~k~ellr~ys~~~ees~~~~v~~~P~~~~~s~S~~~~~~~EaL~ekLk~~~een~~lr~k~  182 (596)
T KOG4360|consen  104 EQVDAPWDRVVQLG-HELSRKDELLRGYSAAIEESEAASVCSTPLVSNESRSAFQRELLEALQEKLKPLEEENTQLRSKA  182 (596)
T ss_pred             hhhcchHHHHHHhh-hhhhhhhhhhheeeeccccccccccccCCCccCcchhhHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence            33444444444443 356666777777753  2332220    00  000011111235667778888888888877555


Q ss_pred             HH---------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045262          239 AD---------------HAKTVSELEAAKTKIKLLKKKLRTEAEQN  269 (594)
Q Consensus       239 ~e---------------~~~v~~ELE~ar~kir~LqkKl~~~a~q~  269 (594)
                      ..               |..++++|-.+..+++-+++.|+....++
T Consensus       183 ~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el  228 (596)
T KOG4360|consen  183 MLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKEL  228 (596)
T ss_pred             HHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43               33567777777777777766666555544

>PF13514 AAA_27: AAA domain

Probab=86.86  E-value=87  Score=38.48  Aligned_cols=37  Identities=24%  Similarity=0.178  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhc
Q 045262          305 KVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEIS  341 (594)
Q Consensus       305 keLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~  341 (594)
                      ..|+.++.++.....+|+.+..+|...+..++..+..
T Consensus       892 ~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~  928 (1111)
T PF13514_consen  892 DELEAELEELEEELEELEEELEELQEERAELEQELEA  928 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455556666666666666666666555555554443

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=86.70  E-value=0.2  Score=59.16  Aligned_cols=178  Identities=23%  Similarity=0.336  Sum_probs=0.0

Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---------------hhhHHHHHHHHHHHHhhhhhhHHHHHHH
Q 045262          160 SEKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGL---------------KEQETIVMELQNRLKLNNMEGRLLNLKI  224 (594)
Q Consensus       160 ~e~~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~L---------------KEQEa~v~ELe~~L~~k~~Ei~~L~~kI  224 (594)
                      .+-.|...+|+..+..+..|..+-.++..+|-++..-               +.-.+.+..|.+.|......++.+.+..
T Consensus       356 ~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~  435 (859)
T PF01576_consen  356 GELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELEREN  435 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            4556677788888888888888888888888777443               2334457777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--------HHHhhcCChh
Q 045262          225 ESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQ--------AHKAAAIDPD  296 (594)
Q Consensus       225 ~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~--------E~e~~~~d~E  296 (594)
                      ..|+.|..-|..++.+..+.+.+|+.++..+-.=...++......-..+....+.+..|+..        +..+..++.+
T Consensus       436 k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE  515 (859)
T PF01576_consen  436 KQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEE  515 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            77777777777777776666666665554433222222222222222222222222222211        1222233333


Q ss_pred             HHHH----HHHHHHHHHHHHH-------HHHHhHHHHHHhhHhHHhhhhhhh
Q 045262          297 TQSR----LQRLKVLEAEAED-------LRKSNMKLQLENSQLARRLESTQM  337 (594)
Q Consensus       297 ~ekK----lq~lkeLE~Ev~E-------LRr~NkeLQ~EKreL~~KL~sAe~  337 (594)
                      ++..    ...|..|+.++.+       +-|..+.|+-+..+|-++|+.+..
T Consensus       516 ~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~  567 (859)
T PF01576_consen  516 FEETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANR  567 (859)
T ss_dssp             ----------------------------------------------------
T ss_pred             HHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            3333    1234555544432       556777788888888777777653

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=86.45  E-value=29  Score=32.52  Aligned_cols=48  Identities=33%  Similarity=0.439  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045262          220 LNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNR  270 (594)
Q Consensus       220 L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K  270 (594)
                      +.-.+..|+..+.+|+.++++.   ..++..+..+.+.|+++++......|
T Consensus        64 l~~d~~~l~~~~~rL~~~~~~~---ere~~~~~~~~~~l~~~~~~~~~~~k  111 (151)
T PF11559_consen   64 LRSDIERLQNDVERLKEQLEEL---ERELASAEEKERQLQKQLKSLEAKLK  111 (151)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444333332   23344455555555555554444443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=86.44  E-value=31  Score=41.13  Aligned_cols=41  Identities=22%  Similarity=0.148  Sum_probs=23.7

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045262          203 VMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAK  243 (594)
Q Consensus       203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~  243 (594)
                      .-+||++|+.+.+++.-+.-+..+|+..-.-++.++....+
T Consensus        93 ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r  133 (916)
T KOG0249|consen   93 NDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR  133 (916)
T ss_pred             hHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh
Confidence            45666666666666666666666665555555555555444

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=86.05  E-value=55  Score=35.41  Aligned_cols=150  Identities=25%  Similarity=0.263  Sum_probs=77.4

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 045262          203 VMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTK  282 (594)
Q Consensus       203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~  282 (594)
                      +..|+.+-.....+++.++.+...|+++|+.|+.....+...+++=|.- -=|. |=|||+.           |++....
T Consensus        29 ~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~-isN~-LlKkl~~-----------l~keKe~   95 (310)
T PF09755_consen   29 IESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEF-ISNT-LLKKLQQ-----------LKKEKET   95 (310)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHH-----------HHHHHHH
Confidence            4455555555556777788888888888888876666555444433211 1111 1122222           2221111


Q ss_pred             HHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhh-hcc---hhhhH--HHHHHHHHH
Q 045262          283 LQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLE-ISV---LEDGE--REALNEMSQ  356 (594)
Q Consensus       283 Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~-~~~---~E~~e--v~~i~ee~~  356 (594)
                      |-              .  +..++=|.-...|-|...+|+.||-+|...|..=+... +.+   +..-+  ......+..
T Consensus        96 L~--------------~--~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le  159 (310)
T PF09755_consen   96 LA--------------L--KYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELE  159 (310)
T ss_pred             HH--------------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            11              0  11122234455677777888888888887777654322 211   11100  012234456


Q ss_pred             HHHHhhHHHHHHHHHHhhhhcchhhHHHHHHH
Q 045262          357 RLREENTSLSKEVEKLHADKCAGVEELVYLKW  388 (594)
Q Consensus       357 ~LR~~NedL~kQVEqLq~dRfseVEELVYLRW  388 (594)
                      .||.+--||-..+|+=|       |-||.-=|
T Consensus       160 ~Lr~EKVdlEn~LE~EQ-------E~lvN~L~  184 (310)
T PF09755_consen  160 RLRREKVDLENTLEQEQ-------EALVNRLW  184 (310)
T ss_pred             HHHHHHHhHHHHHHHHH-------HHHHHHHH
Confidence            67777777777777643       55665555

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=85.66  E-value=46  Score=34.23  Aligned_cols=29  Identities=28%  Similarity=0.343  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHhHHHHHHhhHhHHhhhhh
Q 045262          307 LEAEAEDLRKSNMKLQLENSQLARRLEST  335 (594)
Q Consensus       307 LE~Ev~ELRr~NkeLQ~EKreL~~KL~sA  335 (594)
                      ++.+|..|......-..|...|-.+|..|
T Consensus        87 ~~~~i~~l~ee~~~ke~Ea~~lq~el~~a  115 (246)
T PF00769_consen   87 AEAEIARLEEESERKEEEAEELQEELEEA  115 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444443333333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=85.59  E-value=19  Score=34.86  Aligned_cols=38  Identities=24%  Similarity=0.238  Sum_probs=19.5

Q ss_pred             hHHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHHHHHHH
Q 045262          199 QETIVMELQNRLK-LNNMEGRLLNLKIESLQADNRRLEA  236 (594)
Q Consensus       199 QEa~v~ELe~~L~-~k~~Ei~~L~~kI~sLE~En~RLq~  236 (594)
                      +.+.+.+|...+. ....++..+....+.|+.|...|..
T Consensus        56 ~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~   94 (177)
T PF07798_consen   56 FKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQ   94 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4466667766664 2334444444455555555444443

>PRK10884 SH3 domain-containing protein; Provisional

Probab=85.41  E-value=16  Score=36.94  Aligned_cols=15  Identities=27%  Similarity=0.217  Sum_probs=7.4

Q ss_pred             HHHHHHHHHhhhhhh
Q 045262          203 VMELQNRLKLNNMEG  217 (594)
Q Consensus       203 v~ELe~~L~~k~~Ei  217 (594)
                      +++||++|+.-+.++
T Consensus        95 lp~le~el~~l~~~l  109 (206)
T PRK10884         95 VPDLENQVKTLTDKL  109 (206)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            556655554444333

>PRK09343 prefoldin subunit beta; Provisional

Probab=85.31  E-value=27  Score=32.25  Aligned_cols=108  Identities=17%  Similarity=0.247  Sum_probs=58.1

Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHH
Q 045262          206 LQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQI-LAVQERVTKLQ  284 (594)
Q Consensus       206 Le~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi-~~Lkq~v~~Lq  284 (594)
                      |..++...-.++..+..+|..+-.....|+.++.+...+.+||+....-.+..+-==.....+.+..+ .-|..++..+.
T Consensus         5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie   84 (121)
T PRK09343          5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLE   84 (121)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHH
Confidence            33444444566777777788888888888888888888888877443222222111111222233222 12222222222


Q ss_pred             HHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHH
Q 045262          285 EQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLAR  330 (594)
Q Consensus       285 ~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~  330 (594)
                                       .+++.||.....|+....++|.+-+++..
T Consensus        85 -----------------~~ik~lekq~~~l~~~l~e~q~~l~~ll~  113 (121)
T PRK09343         85 -----------------LRSRTLEKQEKKLREKLKELQAKINEMLS  113 (121)
T ss_pred             -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             22555666666666666666666666543

>PRK10869 recombination and repair protein; Provisional

Probab=85.22  E-value=75  Score=36.27  Aligned_cols=46  Identities=17%  Similarity=0.116  Sum_probs=28.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhh
Q 045262          295 PDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEI  340 (594)
Q Consensus       295 ~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~  340 (594)
                      .+++.+++.+.+.+....+|+.....+..+-.+++.+|..+...+.
T Consensus       327 ~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA  372 (553)
T PRK10869        327 QQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYA  372 (553)
T ss_pred             HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666666666666666666666666666666666666655544

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.91  E-value=86  Score=36.68  Aligned_cols=169  Identities=20%  Similarity=0.217  Sum_probs=86.3

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045262          203 VMELQNRLKLNNMEGRLLNLKIESLQADNRRLE-------AQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILA  275 (594)
Q Consensus       203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq-------~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~  275 (594)
                      +.|||..+.....|++.++......++..++--       +-+-+-.++++  +..--+|-+|+    .+.+|.+..+.-
T Consensus        52 ~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE--~~yl~kI~ele----neLKq~r~el~~  125 (772)
T KOG0999|consen   52 LEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKE--EYYLQKILELE----NELKQLRQELTN  125 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhH--HHHHHHHHHHH----HHHHHHHHHHHH
Confidence            667888888888888888888877777766532       11222222222  11222333333    334444444444


Q ss_pred             HHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHH
Q 045262          276 VQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMS  355 (594)
Q Consensus       276 Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~  355 (594)
                      .+.....|...-.+.....+.+|.-.   ..|-.|+.|.+=.-.+|-.+-.||-.-==+-|.+.+++--+      .=|-
T Consensus       126 ~q~E~erl~~~~sd~~e~~~~~E~qR---~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~s------QVEy  196 (772)
T KOG0999|consen  126 VQEENERLEKVHSDLKESNAAVEDQR---RRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQS------QVEY  196 (772)
T ss_pred             HHHHHHHHHHHHHHhhhcchhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhh------hhhh
Confidence            44444444433222222223333221   22445666665555555444444422211112222211111      1234


Q ss_pred             HHHHHhhHHHHHHHHHHhhhhcchhhHHHHHHHHH
Q 045262          356 QRLREENTSLSKEVEKLHADKCAGVEELVYLKWIN  390 (594)
Q Consensus       356 ~~LR~~NedL~kQVEqLq~dRfseVEELVYLRWVN  390 (594)
                      ..|||++.+|..++|=|.+    -+||++-||-|-
T Consensus       197 EglkheikRleEe~elln~----q~ee~~~Lk~IA  227 (772)
T KOG0999|consen  197 EGLKHEIKRLEEETELLNS----QLEEAIRLKEIA  227 (772)
T ss_pred             hHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence            5688889999988888865    478888888774

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=84.40  E-value=88  Score=36.34  Aligned_cols=95  Identities=16%  Similarity=0.141  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhH-HHHHHHHHHHHHHhhHHHHHHHHHHhhhhcchhhH
Q 045262          304 LKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGE-REALNEMSQRLREENTSLSKEVEKLHADKCAGVEE  382 (594)
Q Consensus       304 lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~e-v~~i~ee~~~LR~~NedL~kQVEqLq~dRfseVEE  382 (594)
                      +.++|..+-.|++.-..---.-.+|...++..+...+.+.+.+. .+.+.++...++..+...+.++=+.+..-      
T Consensus       299 L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~------  372 (557)
T COG0497         299 LEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKA------  372 (557)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            44444444444444443333333444444444433333333322 46677777888777777777666666543      


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCcc
Q 045262          383 LVYLKWINACLRYELRNYQPPAGKT  407 (594)
Q Consensus       383 LVYLRWVNACLR~ELrn~q~p~gk~  407 (594)
                         ..=+.+|+-.||....=+.+++
T Consensus       373 ---A~~L~~~v~~eL~~L~Me~a~F  394 (557)
T COG0497         373 ---AKELEKEVTAELKALAMEKARF  394 (557)
T ss_pred             ---HHHHHHHHHHHHHhcCCCCceE
Confidence               3445678888998777666654

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=84.22  E-value=8.6  Score=36.68  Aligned_cols=84  Identities=31%  Similarity=0.386  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhcc----h
Q 045262          304 LKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHADKCA----G  379 (594)
Q Consensus       304 lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~dRfs----e  379 (594)
                      +.+|..++.+|+..+.+|+.+...|...|....+.+.       .+.+...+..|+..+..|...++.|+.+...    +
T Consensus        74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t-------~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee  146 (169)
T PF07106_consen   74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPT-------NEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEE  146 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHH
Confidence            4445555555555555555555555444443333322       2235566788889999999999999986655    2


Q ss_pred             hhHH--HHHHHHHHHHH
Q 045262          380 VEEL--VYLKWINACLR  394 (594)
Q Consensus       380 VEEL--VYLRWVNACLR  394 (594)
                      ++.+  -|-+|...|-.
T Consensus       147 ~~~~~~~~~~~~k~w~k  163 (169)
T PF07106_consen  147 KEKLEKEYKKWRKEWKK  163 (169)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            2222  37778877754

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=83.73  E-value=15  Score=31.55  Aligned_cols=60  Identities=20%  Similarity=0.290  Sum_probs=34.7

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHH
Q 045262          203 VMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVA----DHAKTVSELEAAKTKIKLLKKKL  262 (594)
Q Consensus       203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~----e~~~v~~ELE~ar~kir~LqkKl  262 (594)
                      .-.||..+...-..|..|.++|..|+.+|..|.++-.    +...++.+...|..+|+.|=.||
T Consensus         6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl   69 (72)
T PF06005_consen    6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL   69 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4456666666666777777777777777666663322    22233345555555555554444

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF13514 AAA_27: AAA domain

Probab=83.60  E-value=1.2e+02  Score=37.30  Aligned_cols=39  Identities=26%  Similarity=0.264  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhh
Q 045262          300 RLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQML  338 (594)
Q Consensus       300 Klq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~  338 (594)
                      ...++..|..+...+......++.+..+....|+.++..
T Consensus       344 ~~~~i~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~  382 (1111)
T PF13514_consen  344 ARERIRELLQEREQLEQALAQARRELEEAERELEQLQAE  382 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666677777777766777777777766666666554

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=83.44  E-value=1e+02  Score=38.42  Aligned_cols=33  Identities=24%  Similarity=0.299  Sum_probs=23.0

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhhhcchhhHHH
Q 045262          352 NEMSQRLREENTSLSKEVEKLHADKCAGVEELV  384 (594)
Q Consensus       352 ~ee~~~LR~~NedL~kQVEqLq~dRfseVEELV  384 (594)
                      +..+.+++..-+++-+++++|+.+..+-+.++-
T Consensus       806 ~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~  838 (1141)
T KOG0018|consen  806 QRRVERWERSVEDLEKEIEGLKKDEEAAEKIIA  838 (1141)
T ss_pred             HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHh
Confidence            444566677778888888888887766555543

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=83.19  E-value=1.2e+02  Score=37.01  Aligned_cols=70  Identities=26%  Similarity=0.375  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchhhHHH-----------------HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 045262          173 KNMVQMLQDREKNLEVELLEYYGLKEQETI-----------------VMELQNRLKLNNMEGRLLNLKIESLQADNRRLE  235 (594)
Q Consensus       173 R~lVeeLqERE~~LE~ELLEyy~LKEQEa~-----------------v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq  235 (594)
                      .+.+.+|+--.-.|.-.|++--||+|...+                 +.+||.+|+....+|..|..+...||.|.+.||
T Consensus        47 eniiqdlrserdalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ  126 (1265)
T KOG0976|consen   47 ENIIQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQ  126 (1265)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777777777777788888888875543                 667888888888888888888888888888888


Q ss_pred             HHHHHHH
Q 045262          236 AQVADHA  242 (594)
Q Consensus       236 ~qv~e~~  242 (594)
                      +-++.+.
T Consensus       127 ~ti~~~q  133 (1265)
T KOG0976|consen  127 DTIQGAQ  133 (1265)
T ss_pred             HHHHHHH
Confidence            7665443

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=82.63  E-value=52  Score=32.43  Aligned_cols=36  Identities=17%  Similarity=0.264  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhh
Q 045262          304 LKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLE  339 (594)
Q Consensus       304 lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~  339 (594)
                      +..|...+.+|+....+++.++..|.-+..+|+++.
T Consensus       114 ~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~  149 (221)
T PF04012_consen  114 VEKLKEQLEELEAKLEELKSKREELKARENAAKAQK  149 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555666677777777777777777777777776533

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=82.18  E-value=1.4e+02  Score=37.04  Aligned_cols=78  Identities=27%  Similarity=0.306  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 045262          166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTV  245 (594)
Q Consensus       166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~  245 (594)
                      ++++..|+..+..++.-...|+.+...|...-|+      ..+.+..+.-+-..++..+.+.+....+++.++..+....
T Consensus       635 ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~------~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~~~~~l~~qk  708 (1072)
T KOG0979|consen  635 EEEIQKLKAEIDIRSSTLRELEEKKQKERKELEE------EQKKLKLLKRERTKLNSELKSYQQRKERIENLVVDLDRQE  708 (1072)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567778888888888888888888777665443      3345555566777777777777777777777777777666


Q ss_pred             HHHH
Q 045262          246 SELE  249 (594)
Q Consensus       246 ~ELE  249 (594)
                      +++.
T Consensus       709 ee~~  712 (1072)
T KOG0979|consen  709 EEYA  712 (1072)
T ss_pred             HHHH
Confidence            6663

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=82.11  E-value=50  Score=31.80  Aligned_cols=155  Identities=23%  Similarity=0.262  Sum_probs=74.7

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHH----------hHHHHHHHH
Q 045262          213 NNMEGRLLNLKIESLQADNRRLEAQVADHAKTVS-----ELEAAKTKIKLLKKKLRTEAEQ----------NREQILAVQ  277 (594)
Q Consensus       213 k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~-----ELE~ar~kir~LqkKl~~~a~q----------~K~qi~~Lk  277 (594)
                      +..+|+.++.+...|+....+++.++....-+-+     +++..+.+|..|..||...-..          +-..+.-++
T Consensus         4 k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~k   83 (177)
T PF13870_consen    4 KRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVK   83 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777888888888888877777665554433     5566666666666666432211          111122223


Q ss_pred             HHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHH
Q 045262          278 ERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQR  357 (594)
Q Consensus       278 q~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~  357 (594)
                      ++...+...   ......++..+...+..+..++..++.....+...+..|..+...-  ....+..+.  ...+++...
T Consensus        84 eKl~~~~~~---~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~--~~P~ll~Dy--~~~~~~~~~  156 (177)
T PF13870_consen   84 EKLHFLSEE---LERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLL--GVPALLRDY--DKTKEEVEE  156 (177)
T ss_pred             HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcHHHHHH--HHHHHHHHH
Confidence            333222221   1111233444555555555555555555555555555543221111  111122221  122344555


Q ss_pred             HHHhhHHHHHHHHHHhh
Q 045262          358 LREENTSLSKEVEKLHA  374 (594)
Q Consensus       358 LR~~NedL~kQVEqLq~  374 (594)
                      ||..-..|-+.++.|.+
T Consensus       157 l~~~i~~l~rk~~~l~~  173 (177)
T PF13870_consen  157 LRKEIKELERKVEILEM  173 (177)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            66555556555555543

>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function

Probab=82.03  E-value=2.1  Score=40.57  Aligned_cols=39  Identities=28%  Similarity=0.397  Sum_probs=35.6

Q ss_pred             hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 045262          199 QETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQ  237 (594)
Q Consensus       199 QEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~q  237 (594)
                      -|+.+.+||.++..|.+||..|+.++..+...|.+|+..
T Consensus        92 yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr  130 (131)
T PF04859_consen   92 YEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR  130 (131)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            357899999999999999999999999999999999754

>PF15294 Leu_zip: Leucine zipper

Probab=81.02  E-value=63  Score=34.43  Aligned_cols=101  Identities=19%  Similarity=0.341  Sum_probs=63.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHH
Q 045262          217 GRLLNLKIESLQADNRRLEAQVADHA----KTVSELEAAKTKIKLLKKKLRTEAEQ------NREQILAVQERVTKLQEQ  286 (594)
Q Consensus       217 i~~L~~kI~sLE~En~RLq~qv~e~~----~v~~ELE~ar~kir~LqkKl~~~a~q------~K~qi~~Lkq~v~~Lq~~  286 (594)
                      +..|.+.|..|++||++|++.+..+.    .+..|-......++.||. ++.....      ..+++.-|..+++.++.+
T Consensus       127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~-~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e  205 (278)
T PF15294_consen  127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD-EQGDQKGKKDLSFKAQDLSDLENKMAALKSE  205 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhccccccccccchhhHHHHHHHHHHH
Confidence            44589999999999999998776544    344455556666677776 3333322      124567788888888755


Q ss_pred             HHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045262          287 AHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLE  324 (594)
Q Consensus       287 E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~E  324 (594)
                      =+..      +..+-...+.|+..+.--+-....+|.+
T Consensus       206 ~ek~------~~d~~~~~k~L~e~L~~~KhelL~~Qeq  237 (278)
T PF15294_consen  206 LEKA------LQDKESQQKALEETLQSCKHELLRVQEQ  237 (278)
T ss_pred             HHHH------HHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence            2211      2222234566777777666666666665

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=80.94  E-value=1.6e+02  Score=36.75  Aligned_cols=79  Identities=19%  Similarity=0.270  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 045262          246 SELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLEN  325 (594)
Q Consensus       246 ~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EK  325 (594)
                      ++.-...-+++.||.++..+.++-.-.+..|+.--.+++..+.+.    .+|+.|   -..|-.+-.-++.....|+.+.
T Consensus       300 k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL----~~I~Pk---y~~l~~ee~~~~~rl~~l~~~~  372 (1200)
T KOG0964|consen  300 KKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDEL----SKIEPK---YNSLVDEEKRLKKRLAKLEQKQ  372 (1200)
T ss_pred             HHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH----HHhhhH---HHHHHhHHHHHHHHHHHHHHHH
Confidence            333344455677777777666665555555555555554443222    122222   3445555566777777788877


Q ss_pred             hHhHHh
Q 045262          326 SQLARR  331 (594)
Q Consensus       326 reL~~K  331 (594)
                      ++|..|
T Consensus       373 ~~l~~K  378 (1200)
T KOG0964|consen  373 RDLLAK  378 (1200)
T ss_pred             HHHHHh
Confidence            777655

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.71  E-value=82  Score=33.41  Aligned_cols=55  Identities=18%  Similarity=0.204  Sum_probs=23.5

Q ss_pred             HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 045262          209 RLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEA  266 (594)
Q Consensus       209 ~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a  266 (594)
                      +|.....+|+.+..++..++.++..+++.+..   +..+++..+..|+..+..+...+
T Consensus        53 ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~---l~~eI~~~~~~I~~r~~~l~~ra  107 (265)
T COG3883          53 EIESLDNQIEEIQSKIDELQKEIDQSKAEIKK---LQKEIAELKENIVERQELLKKRA  107 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444444444444433332   23444455555555554444433

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=80.58  E-value=1.1e+02  Score=34.66  Aligned_cols=61  Identities=25%  Similarity=0.274  Sum_probs=34.2

Q ss_pred             HHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 045262          310 EAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHAD  375 (594)
Q Consensus       310 Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~d  375 (594)
                      |..+|+.-..-++.|...|-.+++...+.+.     +....+..+...+|+-...+..+...+..-
T Consensus       275 el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~-----d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (511)
T PF09787_consen  275 ELEELKQERDHLQEEIQLLERQIEQLRAELQ-----DLEAQLEGEQESFREQPQELSQQLEPELTT  335 (511)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHHHHHHHHHHHHHhch
Confidence            4667777777777777777666655554443     122233444555555555555555444443

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=80.33  E-value=37  Score=30.56  Aligned_cols=37  Identities=22%  Similarity=0.385  Sum_probs=26.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 045262          215 MEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAA  251 (594)
Q Consensus       215 ~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~a  251 (594)
                      .+...+..++..+..+...|+.++.++..+.++|+..
T Consensus        10 ~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l   46 (110)
T TIGR02338        10 AQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERL   46 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3455566677777777777777777777777777644

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	594
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-13
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-12
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	3e-05
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	2e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 74.5 bits (183), Expect = 6e-14
 Identities = 30/216 (13%), Positives = 88/216 (40%), Gaps = 12/216 (5%)

Query: 161  EKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLL 220
            EK   +Q++ +L+  ++  +   + L++E          +  + ++++ + +   +   L
Sbjct: 949  EKKKMQQQMLDLEEQLEEEEAARQKLQLE------KVTADGKIKKMEDDILIMEDQNNKL 1002

Query: 221  NLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERV 280
              + + L+     L   +A+  +    L   K K + +  +L    ++  +    +++  
Sbjct: 1003 TKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIK 1062

Query: 281  TKLQEQAHKAAAIDPDTQSRLQRLKV----LEAEAEDLRKSNMKLQLENSQLARRLESTQ 336
             KL+ ++        + Q+++  LK      E E +           + +   +++   +
Sbjct: 1063 RKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELE 1122

Query: 337  MLEISVLEDGEREALNEMSQRLREENTSLSKEVEKL 372
               IS L++ + E+      +  ++   LS+E+E L
Sbjct: 1123 S-HISDLQE-DLESEKAARNKAEKQKRDLSEELEAL 1156

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 73.3 bits (180), Expect = 1e-13
 Identities = 49/238 (20%), Positives = 103/238 (43%), Gaps = 15/238 (6%)

Query: 166  EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLK-- 223
            EQ+   L     +LQ++ +  E EL              + +    L+ ME R+   +  
Sbjct: 884  EQKHTQLCEEKNLLQEKLQA-ETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEER 942

Query: 224  IESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKL 283
             + LQA+ ++++ Q+ D  + + E EAA+ K++L K     + ++  + IL ++++  KL
Sbjct: 943  SQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKL 1002

Query: 284  QEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVL 343
             ++         D  + L      E +A++L K   K +   S+L  RL+          
Sbjct: 1003 TKERKLLEERVSDLTTNLAE---EEEKAKNLTKLKNKHESMISELEVRLKK--------- 1050

Query: 344  EDGEREALNEMSQRLREENTSLSKEVEKLHADKCAGVEELVYLKWINACLRYELRNYQ 401
            E+  R+ L ++ ++L  E++ L +++ +L A       +L   +         L +  
Sbjct: 1051 EEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDET 1108

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 69.9 bits (171), Expect = 1e-12
 Identities = 44/213 (20%), Positives = 92/213 (43%), Gaps = 25/213 (11%)

Query: 160  SEKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRL 219
             EK   + ++K +++ + +++D+   L  E       K  E  V +L   L         
Sbjct: 976  LEKVTADGKIKKMEDDILIMEDQNNKLTKER------KLLEERVSDLTTNLAE------- 1022

Query: 220  LNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQER 279
               K ++L     + E+ +++    + + E ++ +++ +K+KL  E+    EQI  +Q +
Sbjct: 1023 EEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQ 1082

Query: 280  VTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLE 339
            + +L+ Q  K    + + Q+ L RL+   ++  +  K   +L+   S L   LES +   
Sbjct: 1083 IAELKAQLAKK---EEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKA-- 1137

Query: 340  ISVLEDGEREALNEMSQRLREENTSLSKEVEKL 372
                    R    +  + L EE  +L  E+E  
Sbjct: 1138 -------ARNKAEKQKRDLSEELEALKTELEDT 1163

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 55.6 bits (134), Expect = 3e-08
 Identities = 38/214 (17%), Positives = 82/214 (38%), Gaps = 17/214 (7%)

Query: 166  EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIE 225
            E+E++     +Q  ++R++  E EL E    ++   +  E     +    E  L     E
Sbjct: 856  EEEMQAKDEELQRTKERQQKAEAELKEL--EQKHTQLCEEKNLLQEKLQAETELYAEAEE 913

Query: 226  ---SLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTK 282
                L A  + LE  + +    + E E    +++  KKK++ +     EQ+   +    K
Sbjct: 914  MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973

Query: 283  LQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISV 342
            LQ +            +   ++K +E +   +   N KL  E   L  R+       ++ 
Sbjct: 974  LQLEKV----------TADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLT-TNLAE 1022

Query: 343  LEDGEREALNEMSQRLREENTSLSKEVEKLHADK 376
             E+ + + L ++  +     + L   ++K    +
Sbjct: 1023 EEE-KAKNLTKLKNKHESMISELEVRLKKEEKSR 1055

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 20/166 (12%), Positives = 66/166 (39%), Gaps = 12/166 (7%)

Query: 218  RLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQ 277
            +  + +++  +   ++ EA++ +  +  ++L   K  ++   +       +  E  + + 
Sbjct: 860  QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLA 919

Query: 278  ERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQM 337
             +  +L+E  H+             R++  E  ++ L+    K+Q +   L  +LE  + 
Sbjct: 920  AKKQELEEILHEM----------EARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA 969

Query: 338  LEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHADKCAGVEEL 383
                +    E+   +   +++ ++   +  +  KL  ++    E +
Sbjct: 970  ARQKLQL--EKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERV 1013

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 72.1 bits (177), Expect = 2e-13
 Identities = 42/216 (19%), Positives = 94/216 (43%), Gaps = 12/216 (5%)

Query: 165  CEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKI 224
              +  + +++    LQ   +   V       L+E ++I+++   R  L  +        I
Sbjct: 831  VRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAI 890

Query: 225  ESLQADNRRLEAQ-----VADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQER 279
              LQ   RR+ A+     +   A++V   +     ++    +L+ + ++  ++  ++ E+
Sbjct: 891  VYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEK 950

Query: 280  VTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLE 339
            +  L+             +S ++RL++ E EA++     + LQ E ++L + L  TQ  E
Sbjct: 951  MNNLEITYSTETE---KLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQ-TE 1006

Query: 340  ISVLEDG---EREALNEMSQRLREENTSLSKEVEKL 372
               +E+     +    ++   L+E+NT L  E E+L
Sbjct: 1007 KKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEEL 1042

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 68.6 bits (168), Expect = 4e-12
 Identities = 33/220 (15%), Positives = 76/220 (34%), Gaps = 13/220 (5%)

Query: 165  CEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKI 224
             + ++   ++   ++Q   +     +            ++ LQ   +    +  L  LKI
Sbjct: 856  NKYQMMLREHKSIIIQKHVRGWLARVHY----HRTLKAIVYLQCCYRRMMAKRELKKLKI 911

Query: 225  E-----SLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQER 279
            E       +  +  LE ++    + + E       +      L        E++ +  ER
Sbjct: 912  EARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVER 971

Query: 280  VTKLQEQAHKAAAIDPDTQSRLQRLK----VLEAEAEDLRKSNMKLQLENSQLARRLEST 335
            +   +E+A  A       Q  + +L+      + E + + +   K + E  QL   L+  
Sbjct: 972  LRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQ 1031

Query: 336  QMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHAD 375
              L  +  E+  R   ++  +        L +E ++L  D
Sbjct: 1032 NTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELD 1071

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 54.7 bits (132), Expect = 6e-08
 Identities = 25/173 (14%), Positives = 62/173 (35%), Gaps = 14/173 (8%)

Query: 161  EKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLL 220
                 E ++  L+  +       K+L  ++         E        +L+ +    R+ 
Sbjct: 922  LHIGLENKIMQLQRKIDEQNKEYKSLLEKM------NNLEITYSTETEKLRSDVERLRMS 975

Query: 221  NLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERV 280
              + ++       L+ ++A   K + + +  K  I+    K + E EQ   ++   +E+ 
Sbjct: 976  EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSEL---KEQN 1032

Query: 281  TKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLE 333
            T L+ +  +      D    +      E   + L +   +L+L+ +    R +
Sbjct: 1033 TLLKTEKEELNRRIHDQAKEIT-----ETMEKKLVEETKQLELDLNDERLRYQ 1080

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 4e-09
 Identities = 92/639 (14%), Positives = 192/639 (30%), Gaps = 176/639 (27%)

Query: 51  HGSEFELG-VRAQHEDEVP-NLKSVPSSCSVVSVASQRYEESYMEKVVVDNSMVGLSPSS 108
           H  +FE G  + Q++D +     +   +     V  Q   +S + K  +D+ ++     S
Sbjct: 5   HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDV--QDMPKSILSKEEIDHIIMSKDAVS 62

Query: 109 RHSR------DNNSYLLPEFNELVKEIDFG--------------GPNVGYHPKK------ 142
              R           ++ +F E V  I++                    Y  ++      
Sbjct: 63  GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 143 VIVTPKSDVENPRPCRGSEKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGL----KE 198
             V  K +V   R           Q    L+  +  L+   KN+ +      G+    K 
Sbjct: 123 NQVFAKYNV--SRL----------QPYLKLRQALLELRP-AKNVLI-----DGVLGSGKT 164

Query: 199 QETIVME-LQNRLKLNNMEGRL--LNLK--------IESLQADNRRLE---AQVADHAKT 244
              + ++   +      M+ ++  LNLK        +E LQ    +++      +DH+  
Sbjct: 165 --WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 245 VSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAI--DPDTQSRLQ 302
           +               KLR  + Q   + L        L+ + ++   +    + Q+   
Sbjct: 223 I---------------KLRIHSIQAELRRL--------LKSKPYENCLLVLL-NVQNA-- 256

Query: 303 RLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISV--LEDG--EREALNEMSQRL 358
             K   A   +L    + L     Q+   L +     IS+          E  + + + L
Sbjct: 257 --KAWNAF--NLS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 359 REENTSLSKEVEKLHADKCAGVEELVYLKWINACLRYELRNYQPPAGKTVARDLSKTLSP 418
                 L +EV   +  + + + E +     +    ++  N++      +   +  +L+ 
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESI----RDGLATWD--NWKHVNCDKLTTIIESSLNV 365

Query: 419 NSEEKAKQLILEYAHAEGHGNIMNIDSD--------HWSTSQASCITDSENH-HDDSSAD 469
               + +++    +       +    +          W     S +    N  H  S  +
Sbjct: 366 LEPAEYRKMFDRLS-------VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418

Query: 470 KS------------FSTKISSSNKTKFFHK-------LRKLVRGKDVSP----------- 499
           K                K+   N+    H+       + K     D+ P           
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYA-LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477

Query: 500 ---LKRSSSVDKIGSFEDG--DSPWYSS---GTSTVMNAVSPRSSYRHSLDVQRLRSVNE 551
              LK     +++  F     D  +        ST  NA     +      +Q+L+   +
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN-----TLQQLKFY-K 531

Query: 552 DEIRNVKSRRSNSDLVSSDAYKRFSLSRESSIDFGKQPD 590
             I    +      LV  +A   F    E ++   K  D
Sbjct: 532 PYIC--DNDPKYERLV--NAILDFLPKIEENLICSKYTD 566

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 25/161 (15%), Positives = 55/161 (34%), Gaps = 12/161 (7%)

Query: 232 RRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAA 291
            + E  VA    T +E+++  +    L+K  +  AE  R ++   ++    LQ+      
Sbjct: 832 IKREPFVAPAGLTPNEIDSTWSA---LEKAEQEHAEALRIELKRQKKIAVLLQKYNRILK 888

Query: 292 AID---------PDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISV 342
            ++           +      +  ++A+ ++L   + + Q    Q    L S       +
Sbjct: 889 KLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTEL 948

Query: 343 LEDGEREALNEMSQRLREENTSLSKEVEKLHADKCAGVEEL 383
             +G  E          ++ T +    E       A +E L
Sbjct: 949 NYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERL 989

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 52/250 (20%), Positives = 104/250 (41%), Gaps = 10/250 (4%)

Query: 160 SEKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYG-LKEQETIVMELQNRLKLNNMEGR 218
           ++K   E   K L++ +  LQ + K  E EL +Y   LK+ +  +   + +      +  
Sbjct: 27  ADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVA 86

Query: 219 LLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQE 278
            LN +I+  + +  R + ++A   + + E E A  + +   K + + A+++ E++   + 
Sbjct: 87  SLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEI 146

Query: 279 RVTKLQEQAHKAAAIDPDTQSRL----QRLKVLEAEAEDLRKSNMKLQLENSQLARRLES 334
           ++ + +  A  A     +   +L      L+  E  AE       +L+ E   +   L+S
Sbjct: 147 QLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKS 206

Query: 335 --TQMLEISVLEDGEREALNEMSQRLREENT---SLSKEVEKLHADKCAGVEELVYLKWI 389
              Q  + S  ED   E +  +S +L+E  T      + V KL        +EL   K  
Sbjct: 207 LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLK 266

Query: 390 NACLRYELRN 399
              +  EL +
Sbjct: 267 YKAISEELDH 276

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	594
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.6
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.25
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	97.07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.83
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.76
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.63
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.47
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	96.29
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	95.03
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	94.47
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	93.69
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	93.27
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	92.43
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	91.46
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	91.05
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	91.04
1ik9_A	213	DNA repair protein XRCC4; DNA END joining, double-	90.79
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	90.48
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	88.99
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	87.64
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	86.3
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	86.15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	85.64
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	85.33
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	85.33
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	84.94
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	84.49
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	83.45
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	83.4
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	83.06
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	82.53
2no2_A	107	HIP-I, huntingtin-interacting protein 1; clathrin	80.63
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	80.19
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	80.07

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.60  E-value=0.0078  Score=58.27  Aligned_cols=166  Identities=22%  Similarity=0.246  Sum_probs=103.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045262          165 CEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKT  244 (594)
Q Consensus       165 ~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v  244 (594)
                      ...||...|.....++.+=..|+.+|-||-.-      =.+||.+|.   .+|..+.+++.-|+..+.+|.         
T Consensus         8 ~~ee~~ywk~~~~~~~q~~~~le~El~EFqes------SrELE~ELE---~eL~~~Ek~~~~L~~~~~~L~---------   69 (189)
T 2v71_A            8 LKEETAYWKELSMKYKQSFQEARDELVEFQEG------SRELEAELE---AQLVQAEQRNRDLQADNQRLK---------   69 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---------
Confidence            47899999999999999999999999999653      456666654   356666666666666666654         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045262          245 VSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLE  324 (594)
Q Consensus       245 ~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~E  324 (594)
                       .|++.||.|+...+.....       ++..|+..++.|...                 ...|-..+++|-..|++|+-.
T Consensus        70 -~E~e~~k~K~~~~~~e~~~-------~~~~Lq~el~~l~~~-----------------~~~l~~~ireLEq~NDdlEr~  124 (189)
T 2v71_A           70 -YEVEALKEKLEHQYAQSYK-------QVSVLEDDLSQTRAI-----------------KEQLHKYVRELEQANDDLERA  124 (189)
T ss_dssp             -HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHhhHHHHH
Confidence             4566677777665554443       455566666665533                 344556666777789999999


Q ss_pred             hhHhHHhhhhhhhhhhcch------hh--hHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 045262          325 NSQLARRLESTQMLEISVL------ED--GEREALNEMSQRLREENTSLSKEVEKLH  373 (594)
Q Consensus       325 KreL~~KL~sAe~~~~~~~------E~--~ev~~i~ee~~~LR~~NedL~kQVEqLq  373 (594)
                      .|..+.-|+..+.+.+..+      ++  .+-..+.+++.+||.+..||.-++.-++
T Consensus       125 ~R~~~~SleD~e~kln~aiEr~alLE~El~EKe~l~~~~QRLkdE~rDLk~El~v~~  181 (189)
T 2v71_A          125 KRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQELAVRE  181 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------------
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999988776433      22  2234556667777777777776665554

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.25  E-value=0.11  Score=51.11  Aligned_cols=73  Identities=15%  Similarity=0.116  Sum_probs=31.3

Q ss_pred             HHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHH
Q 045262          190 LLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTV----SELEAAKTKIKLLKKKL  262 (594)
Q Consensus       190 LLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~----~ELE~ar~kir~LqkKl  262 (594)
                      |--++.|++-++.+..|+.++..--.+|..|...+..++.....++.++.+...-.    .+++.++.+++..+.++
T Consensus         7 L~~L~~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l   83 (256)
T 3na7_A            7 LKQLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM   83 (256)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444454444445554444444444444444444444444444443333332222    23334444444444444

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=97.07  E-value=0.0021  Score=75.27  Aligned_cols=76  Identities=20%  Similarity=0.125  Sum_probs=32.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045262          165 CEQEVKNLKNMVQMLQDREKNLEVELLEYYGL-KEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVAD  240 (594)
Q Consensus       165 ~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~L-KEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e  240 (594)
                      ...|+..|+..+..|+++-.+++.++-+...- ..-+..+.+++.+|.....++..+...+..++.+...|+.++.+
T Consensus       855 ~~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~e  931 (1184)
T 1i84_S          855 QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHE  931 (1184)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566666666666665555554443322110 00122233333344433333333444444444444444444433

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.83  E-value=0.035  Score=65.08  Aligned_cols=132  Identities=15%  Similarity=0.215  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 045262          226 SLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLK  305 (594)
Q Consensus       226 sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lk  305 (594)
                      .|...+..|+.++.++..   .|+....+++.|+.+++........++..|+..+..|+..+.       |.+.-...++
T Consensus       918 ~l~~~~~~LE~kl~eLq~---rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~-------e~~~~~~~v~  987 (1080)
T 2dfs_A          918 RYKKLHIGLENKIMQLQR---KIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEE-------EAKNATNRVL  987 (1080)
T ss_dssp             ------------------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHH-------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence            344445555555554433   333344445555555444444444455555555555554432       2222334466


Q ss_pred             HHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 045262          306 VLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKL  372 (594)
Q Consensus       306 eLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqL  372 (594)
                      .|+.|+.+|+.....+..|+..|-.+++..+...     ...|..+.++...||+.-++|..++...
T Consensus       988 ~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L-----~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A          988 SLQEEIAKLRKELHQTQTEKKTIEEWADKYKHET-----EQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666666666655444443211     1334555666666666666666444444

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.76  E-value=0.049  Score=63.93  Aligned_cols=23  Identities=35%  Similarity=0.523  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHh
Q 045262          351 LNEMSQRLREENTSLSKEVEKLH  373 (594)
Q Consensus       351 i~ee~~~LR~~NedL~kQVEqLq  373 (594)
                      +.+.++.|..+|..|-.|++.|.
T Consensus      1021 L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A         1021 TEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.63  E-value=0.2  Score=49.28  Aligned_cols=40  Identities=13%  Similarity=0.050  Sum_probs=19.0

Q ss_pred             chhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 045262          196 LKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVA  239 (594)
Q Consensus       196 LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~  239 (594)
                      |.++-..+.+|+.-    ..+|+.+...+..|..+...|+++++
T Consensus         3 m~~~L~~L~~LQ~l----D~~i~~l~~~~~~lp~el~~le~~~~   42 (256)
T 3na7_A            3 SNTHLKQLIEISHL----DKEIDSLEPLIREKRKDLDKALNDKE   42 (256)
T ss_dssp             CHHHHHHHHHHHHH----HHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            45555555554433    23445555555555544444444433

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.47  E-value=0.44  Score=61.74  Aligned_cols=206  Identities=16%  Similarity=0.170  Sum_probs=94.4

Q ss_pred             ccCCCCCCCCCCCCCCCCCchHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHH
Q 045262          145 VTPKSDVENPRPCRGSEKDDCEQEVKNLK----NMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLL  220 (594)
Q Consensus       145 ~~~~~~~~~~~a~~~~e~~d~e~EI~~LR----~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L  220 (594)
                      +..|.-|.||..|-        +=|...+    .--.++.++-.+|+.=|-   -|.|....|.+|+.+|..+..++..-
T Consensus      1885 ~~~R~~yvTP~syL--------eli~~y~~ll~~K~~el~~~~~rl~~GL~---KL~et~~~V~~l~~~L~~~~~~L~~k 1953 (3245)
T 3vkg_A         1885 RQGRQNYVTPRHYL--------DFINQVVLLINEKRDQLEEEQLHLNIGLK---KLRDTEAQVKDLQVSLAQKNRELDVK 1953 (3245)
T ss_dssp             SSSCCCCCCHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCcccCCHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677788885433        1222222    222334444444444333   35666666777777777666666555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChh
Q 045262          221 NLKIESLQADNRRLEAQVADHAKT----VSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPD  296 (594)
Q Consensus       221 ~~kI~sLE~En~RLq~qv~e~~~v----~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E  296 (594)
                      ..+.+.+=.+...=++++.+-...    .++++....++...+...+.+..++.= +.=++++++.++++=   ......
T Consensus      1954 ~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~P-a~Pkr~~l~~ae~~l---~~~~~~ 2029 (3245)
T 3vkg_A         1954 NEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEP-TGPLREEVEQLENAA---NELKLK 2029 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHH---HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CChHHHHHHHHHHHH---HHHHHH
Confidence            444443322222222222222111    122222233344444444333322210 011233333333221   111134


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 045262          297 TQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHA  374 (594)
Q Consensus       297 ~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~  374 (594)
                      ++.+.+.+++||.++.+|+..-.++..||..|...++.++.+..         .+..-++.|-.++.+=..++++|+.
T Consensus      2030 L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~---------rA~~Li~gL~~Ek~RW~~~~~~l~~ 2098 (3245)
T 3vkg_A         2030 QDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVD---------RSIALLDNLNSERGRWEQQSENFNT 2098 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhhhhccccHHHHHHHHHH
Confidence            55566667778888877777777777777766666555554432         1122234444445555555555543

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=96.29  E-value=0.64  Score=42.37  Aligned_cols=24  Identities=13%  Similarity=0.036  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 045262          167 QEVKNLKNMVQMLQDREKNLEVEL  190 (594)
Q Consensus       167 ~EI~~LR~lVeeLqERE~~LE~EL  190 (594)
                      .++..+...+..|...-..++.++
T Consensus        13 ~~~~~~~~~~~~l~~~l~~l~~~~   36 (284)
T 1c1g_A           13 LDKENALDRADEAEADKKAAEDRS   36 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444433

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.24  E-value=3.3  Score=54.00  Aligned_cols=84  Identities=12%  Similarity=0.183  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHH---HhhHHHHHHHHHHhh
Q 045262          298 QSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLR---EENTSLSKEVEKLHA  374 (594)
Q Consensus       298 ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR---~~NedL~kQVEqLq~  374 (594)
                      +=|.+++.++|.+..+-++...+.|.+-.+|-.+|+.-+......+  .+.+.++.+++...   ..-+.|...+.+=+.
T Consensus      2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~--~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~ 2087 (3245)
T 3vkg_A         2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLI--RETEQIKTESSKVKNKVDRSIALLDNLNSERG 2087 (3245)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence            4566677778877777777777777777777777776666554221  12222333332222   223567777777777


Q ss_pred             hhcchhhHH
Q 045262          375 DKCAGVEEL  383 (594)
Q Consensus       375 dRfseVEEL  383 (594)
                      .|-..+++|
T Consensus      2088 RW~~~~~~l 2096 (3245)
T 3vkg_A         2088 RWEQQSENF 2096 (3245)
T ss_dssp             HHHHHHHHH
T ss_pred             cHHHHHHHH
Confidence            777777765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.03  E-value=0.19  Score=53.34  Aligned_cols=22  Identities=32%  Similarity=0.342  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHhHHHHHHhhHh
Q 045262          307 LEAEAEDLRKSNMKLQLENSQL  328 (594)
Q Consensus       307 LE~Ev~ELRr~NkeLQ~EKreL  328 (594)
                      ++.++.+++.....|+.|+.++
T Consensus       528 ~~~~~~~~~~~~~~~~~~~~~l  549 (597)
T 3oja_B          528 RRTEADAKQKETEDLEQENIAL  549 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhcchhhHHhhhHHH
Confidence            4444444444444444444444

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=94.47  E-value=2.6  Score=37.79  Aligned_cols=24  Identities=25%  Similarity=0.333  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHhHHHHHHhhHh
Q 045262          305 KVLEAEAEDLRKSNMKLQLENSQL  328 (594)
Q Consensus       305 keLE~Ev~ELRr~NkeLQ~EKreL  328 (594)
                      ++|+..+.+....|..|+.+|+.|
T Consensus        86 ~el~~rleeeee~~~~L~~~kkkl  109 (129)
T 2fxo_A           86 KEMNKRLEDEEEMNAELTAKKRKL  109 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=93.69  E-value=3.7  Score=42.84  Aligned_cols=38  Identities=16%  Similarity=0.186  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhh
Q 045262          302 QRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLE  339 (594)
Q Consensus       302 q~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~  339 (594)
                      +..+..=.++..|++.|.+|+.+.+++-.+++.|.+.+
T Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (487)
T 3oja_A          435 RDWDMYQHKETQLAEENARLKKLNGEADLALASANATL  472 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHH
Confidence            33444455666677777777777777777777666655

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=93.27  E-value=1.5  Score=46.49  Aligned_cols=33  Identities=18%  Similarity=0.275  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhh
Q 045262          305 KVLEAEAEDLRKSNMKLQLENSQLARRLESTQM  337 (594)
Q Consensus       305 keLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~  337 (594)
                      .+||....+.++...+|+.|+..+..+|..-+.
T Consensus       547 ~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~  579 (597)
T 3oja_B          547 IALEKQLDNKRAKQAELRQETSLKRQKVKQLEA  579 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444455555555555444444444333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=92.43  E-value=4.4  Score=38.67  Aligned_cols=103  Identities=18%  Similarity=0.322  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHH--------HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 045262          166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQET--------IVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQ  237 (594)
Q Consensus       166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa--------~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~q  237 (594)
                      +.-+..|+..+..|+.-...|+-++...-..-+||.        .+.+|+.++..-..|++.+.-....++.+|+.|++.
T Consensus        47 E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ek  126 (168)
T 3o0z_A           47 ESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDM  126 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344666666666666667777777776666666665        377888888888888888888888888888888888


Q ss_pred             HHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 045262          238 VADHAKTVSELEA-AKTKIKLLKKKLRTEAEQ  268 (594)
Q Consensus       238 v~e~~~v~~ELE~-ar~kir~LqkKl~~~a~q  268 (594)
                      +...-+-..-+++ .-=++|.||.++..+...
T Consensus       127 l~~lEKe~a~~eid~~~eLKalQ~~~eqE~~~  158 (168)
T 3o0z_A          127 LNHSEKEKNNLEIDLNYKLKSLQQRLEQEVNE  158 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            8777665554441 223567777777665543

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=91.46  E-value=10  Score=36.25  Aligned_cols=37  Identities=16%  Similarity=0.207  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhh
Q 045262          304 LKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEI  340 (594)
Q Consensus       304 lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~  340 (594)
                      +..|..|+..+|-....++.+|+.|.-|+..-|...+
T Consensus        99 i~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a  135 (168)
T 3o0z_A           99 ITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKN  135 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4557778888888888888888888777777766554

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=91.05  E-value=8.3  Score=34.51  Aligned_cols=18  Identities=22%  Similarity=0.549  Sum_probs=8.4

Q ss_pred             HHHhhHHHHHHHHHHhhh
Q 045262          358 LREENTSLSKEVEKLHAD  375 (594)
Q Consensus       358 LR~~NedL~kQVEqLq~d  375 (594)
                      |.....+|-++++.+...
T Consensus       109 le~e~~~Lk~~led~e~~  126 (129)
T 2fxo_A          109 LEDECSELKRDIDDLELT  126 (129)
T ss_dssp             HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            334444555555554443

>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*

Probab=90.79  E-value=1.6  Score=42.62  Aligned_cols=58  Identities=16%  Similarity=0.201  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 045262          218 RLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVT  281 (594)
Q Consensus       218 ~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~  281 (594)
                      ..|..+...|+.+..+|.+|+.++.....++|      ..|=.|+-...+.=|..|+.|++++.
T Consensus       142 ~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E------~~L~~KF~~lLNeKK~KIR~lq~~Ll  199 (213)
T 1ik9_A          142 EHLQKENERLLRDWNDVQGRFEKAVSAKEALE------TDLYKRFILVLNEKKTKIRSLHNKLL  199 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            33455566677777788888888888888887      34556666666666667777765553

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=90.48  E-value=3.3  Score=37.98  Aligned_cols=94  Identities=17%  Similarity=0.200  Sum_probs=59.7

Q ss_pred             hHHHHHHHHHHHHH--HHHHH-HHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q 045262          217 GRLLNLKIESLQAD--NRRLE-AQVADHAK--TVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAA  291 (594)
Q Consensus       217 i~~L~~kI~sLE~E--n~RLq-~qv~e~~~--v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~  291 (594)
                      +..++.+|..+...  +.++. ..++-.++  +.-|+-.++.++..|..++...    ..++-.||.++..++.+     
T Consensus        34 A~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~----~kE~~~lK~el~~~~~k-----  104 (138)
T 3hnw_A           34 ASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENK----DKEIYDLKHELIAAQIK-----  104 (138)
T ss_dssp             HHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH-----
Confidence            34466667666643  55554 23333222  4456776777777776666543    55677777777776655     


Q ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHh
Q 045262          292 AIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARR  331 (594)
Q Consensus       292 ~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~K  331 (594)
                                  +.++..++.+|++.+..||.++..|--.
T Consensus       105 ------------~e~~~~e~~~l~~~~~~l~~~~~~le~~  132 (138)
T 3hnw_A          105 ------------AESSAKEIKELKSEINKYQKNIVKLETE  132 (138)
T ss_dssp             ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        5667778888888888888887777433

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=88.99  E-value=2.7  Score=46.31  Aligned_cols=81  Identities=14%  Similarity=0.152  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Q 045262          297 TQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHADK  376 (594)
Q Consensus       297 ~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~dR  376 (594)
                      +...++.|+.|+.=|+++|-..++|+-.   ..+||.+-.-.-....+. .|         =.+.|+++.|||||+-.-.
T Consensus       126 VdnQlsnIrvLQsnLedq~~kIQRLEvD---IdiqirsCKgsCsr~~~~-~v---------d~~sY~~~QKQLeQv~a~d  192 (562)
T 3ghg_A          126 VIEKVQHIQLLQKNVRAQLVDMKRLEVD---IDIKIRSCRGSCSRALAR-EV---------DLKDYEDQQKQLEQVIAKD  192 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHGGGTBSCCCCC-CC---------CHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhccccccchhee-ec---------chHHHHHHHHHHHHHhhcc
Confidence            4444566677777777666666666543   334444433221111111 11         1256999999999999888


Q ss_pred             cchhhHHHHHHHHH
Q 045262          377 CAGVEELVYLKWIN  390 (594)
Q Consensus       377 fseVEELVYLRWVN  390 (594)
                      .--++..=||+=+.
T Consensus       193 L~p~~~~q~Lp~lK  206 (562)
T 3ghg_A          193 LLPSRDRQHLPLIK  206 (562)
T ss_dssp             CCCSCCCC------
T ss_pred             cCCccccccchhcc
Confidence            87777777887554

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=86.30  E-value=7.3  Score=33.01  Aligned_cols=25  Identities=16%  Similarity=0.171  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHhHHHHHHhhHhH
Q 045262          305 KVLEAEAEDLRKSNMKLQLENSQLA  329 (594)
Q Consensus       305 keLE~Ev~ELRr~NkeLQ~EKreL~  329 (594)
                      ..+|.+++-||+-..++-.-+-+|-
T Consensus        45 ~~~E~d~~~LrkdvD~a~l~r~dLE   69 (86)
T 3swk_A           45 EEAENTLQSFRQDVDNASLARLDLE   69 (86)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            5688888888888887777776663

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=86.15  E-value=15  Score=32.92  Aligned_cols=73  Identities=18%  Similarity=0.204  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 045262          247 ELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENS  326 (594)
Q Consensus       247 ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKr  326 (594)
                      |++.||.|....       ...+-.++..|+..+..|....                 ..|=..+.+|-..|++|+-..|
T Consensus        18 E~e~~k~K~~~~-------~~e~~~~~~~Lq~El~~lr~~~-----------------~~l~~~iReLEq~NDDLER~~R   73 (111)
T 2v66_B           18 EVEALKEKLEHQ-------YAQSYKQVSVLEDDLSQTRAIK-----------------EQLHKYVRELEQANDDLERAKR   73 (111)
T ss_dssp             HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHhchHHHHHHH
Confidence            444455554443       3334445667777777776552                 2344455666678999999999


Q ss_pred             HhHHhhhhhhhhhhcch
Q 045262          327 QLARRLESTQMLEISVL  343 (594)
Q Consensus       327 eL~~KL~sAe~~~~~~~  343 (594)
                      .-+.=|...+.+.|..+
T Consensus        74 ~t~~SLeD~E~k~n~ai   90 (111)
T 2v66_B           74 ATIVSLEDFEQRLNQAI   90 (111)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHH
Confidence            98888888888876433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=85.64  E-value=17  Score=37.75  Aligned_cols=14  Identities=7%  Similarity=0.041  Sum_probs=8.0

Q ss_pred             CCCchHHHHHHHHH
Q 045262          161 EKDDCEQEVKNLKN  174 (594)
Q Consensus       161 e~~d~e~EI~~LR~  174 (594)
                      .......|++.|..
T Consensus       322 g~~eF~~Eve~L~~  335 (487)
T 3oja_A          322 GSETERLECERENQ  335 (487)
T ss_dssp             ---CHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhc
Confidence            45677888877654

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=85.33  E-value=19  Score=37.24  Aligned_cols=84  Identities=14%  Similarity=0.204  Sum_probs=46.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q 045262          235 EAQVADHAKTVSELEAAKTKIKLLKKKLR---TEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEA  311 (594)
Q Consensus       235 q~qv~e~~~v~~ELE~ar~kir~LqkKl~---~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev  311 (594)
                      ++++.....-...-..++....+||+||.   ...-|.+.|...--.-|..|++-=+      .+.-.-++++++||.||
T Consensus       379 ~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~  452 (471)
T 3mq9_A          379 QTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLD------AEKAQGQKKVEELEGEI  452 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence            33333333333334457777888888775   4455666776666666666664311      11112234688888888


Q ss_pred             HHHHHHhHHHHHH
Q 045262          312 EDLRKSNMKLQLE  324 (594)
Q Consensus       312 ~ELRr~NkeLQ~E  324 (594)
                      .+|-...+++.-|
T Consensus       453 ~~~~~~~~~~~~~  465 (471)
T 3mq9_A          453 TTLNHKLQDASAE  465 (471)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7765554444443

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=85.33  E-value=18  Score=31.34  Aligned_cols=63  Identities=8%  Similarity=0.076  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHH
Q 045262          202 IVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKT----KIKLLKKKLRT  264 (594)
Q Consensus       202 ~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~----kir~LqkKl~~  264 (594)
                      .+..++........||..|.++|..|+.+-.+++..+.+......+-+....    .+..|.|||+.
T Consensus        31 ~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriql   97 (101)
T 3u1c_A           31 DKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQL   97 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555566666788889999999999988888888877665555554444    77777777764

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=84.94  E-value=29  Score=33.57  Aligned_cols=63  Identities=24%  Similarity=0.229  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 045262          166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQAD  230 (594)
Q Consensus       166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~E  230 (594)
                      .+.+..|+.-+.++++==.-||.+|-.  .|...+.....|+..+..-..|++.++.+......|
T Consensus        23 ~q~~~~le~El~EFqesSrELE~ELE~--eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e   85 (189)
T 2v71_A           23 KQSFQEARDELVEFQEGSRELEAELEA--QLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ   85 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777777777777666666665532  344455666677777666667777777666666666

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=84.49  E-value=22  Score=31.99  Aligned_cols=26  Identities=27%  Similarity=0.313  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHH
Q 045262          223 KIESLQADNRRLEAQVADHAKTVSEL  248 (594)
Q Consensus       223 kI~sLE~En~RLq~qv~e~~~v~~EL  248 (594)
                      ....|+.+...|+.++.-..+.+.+|
T Consensus         7 ~~~~lq~~~~ql~~qL~k~~~~r~~L   32 (112)
T 1x79_B            7 QVKKLQLMLRQANDQLEKTMKDKQEL   32 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=83.40  E-value=13  Score=31.74  Aligned_cols=41  Identities=22%  Similarity=0.321  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045262          203 VMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAK  243 (594)
Q Consensus       203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~  243 (594)
                      +-.||..+...-..|..|.++|+-|..+|..|..++.+...
T Consensus         8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~   48 (81)
T 2jee_A            8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH   48 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44566666666677888888888888888888877666544

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=83.06  E-value=31  Score=32.39  Aligned_cols=69  Identities=26%  Similarity=0.289  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 045262          303 RLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLH  373 (594)
Q Consensus       303 ~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq  373 (594)
                      ++++-|..+..--|....||.+...|-.+|.++....-.+.  .+....-.+++.+-..+-.|-++|-.|+
T Consensus        85 kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~--~eLd~tl~el~~~~~~~~~~~~~~~~~~  153 (155)
T 2efr_A           85 KLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAIS--EEMKQLEDKVEELLSKNYHLENEVARLK  153 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence            35556666666667777777777777777766655443221  1112222344444455555666665554

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=82.53  E-value=24  Score=31.65  Aligned_cols=47  Identities=15%  Similarity=0.149  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Q 045262          271 EQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQ  327 (594)
Q Consensus       271 ~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKre  327 (594)
                      ++|-+|++||......        +..|.-  .=..+-.|..+|...+..||.++..
T Consensus        62 E~I~vLkaQv~IY~~D--------F~aERa--dREkl~~eKe~L~~ql~~Lq~q~~~  108 (110)
T 2v4h_A           62 ETVPVLKAQADIYKAD--------FQAERH--AREKLVEKKEYLQEQLEQLQREFNK  108 (110)
T ss_dssp             THHHHHHHHHHHHHHH--------HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHH--------Hccchh--hHHHHHhHHHHHHHHHHHHHHHHHh
Confidence            4677888888776654        222211  1133444555555555555555443

>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}

Probab=80.63  E-value=16  Score=32.21  Aligned_cols=56  Identities=20%  Similarity=0.196  Sum_probs=46.9

Q ss_pred             hhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045262          194 YGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELE  249 (594)
Q Consensus       194 y~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE  249 (594)
                      -.+++|-..|..|.++|..+..||..|+..+..++.++..+...+....+-+..|.
T Consensus        47 ~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L~  102 (107)
T 2no2_A           47 RKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSLV  102 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678888899999999999999999999999999999999888866665555543

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=80.19  E-value=33  Score=30.81  Aligned_cols=79  Identities=16%  Similarity=0.200  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 045262          230 DNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEA  309 (594)
Q Consensus       230 En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~  309 (594)
                      +-..|+.++   .-+.++|+.+...-..|...++...+..+.|+-.|..++                        ..=|.
T Consensus         7 ~~~~lq~~~---~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~------------------------q~sE~   59 (112)
T 1x79_B            7 QVKKLQLML---RQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRA------------------------QASEI   59 (112)
T ss_dssp             HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHH
T ss_pred             HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHH
Confidence            334455555   333446666655556666555555555555544443332                        23344


Q ss_pred             HHHHHHHHhHHHHHHhhHhHHhhhhh
Q 045262          310 EAEDLRKSNMKLQLENSQLARRLEST  335 (594)
Q Consensus       310 Ev~ELRr~NkeLQ~EKreL~~KL~sA  335 (594)
                      ...+||.+-.+++..-++=..+|..-
T Consensus        60 ~L~~Lqq~fsq~q~~vq~qL~~Lt~~   85 (112)
T 1x79_B           60 LLEELQQGLSQAKRDVQEQMAVLMQS   85 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555544444333

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=80.07  E-value=15  Score=31.65  Aligned_cols=61  Identities=15%  Similarity=0.268  Sum_probs=36.6

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHH
Q 045262          204 MELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELE----AAKTKIKLLKKKLRT  264 (594)
Q Consensus       204 ~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE----~ar~kir~LqkKl~~  264 (594)
                      ..++....-...+|.-|.++|..|+.+-.+.+..+.....-..+-+    .|-+.+..|+|||+.
T Consensus        33 k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriql   97 (101)
T 3u59_A           33 KQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQL   97 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444445567777888888888887777776665554333332    233366666666653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	594
d1bg1a1	186	a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus)	0.003

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00